Query 017626
Match_columns 368
No_of_seqs 167 out of 441
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 17:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 99.1 4.1E-11 3E-15 93.5 7.5 77 288-367 4-80 (86)
2 d2vv5a3 f.34.1.1 (A:27-112) Me 91.5 0.35 2.5E-05 35.7 7.7 59 206-278 7-65 (86)
3 d1wbha1 c.1.10.1 (A:1-213) KDP 7.3 74 0.0054 26.7 1.5 35 148-182 176-210 (213)
4 d1iwga8 f.35.1.1 (A:513-566,A: 6.6 1.4E+02 0.01 24.3 3.1 27 245-271 12-38 (222)
5 d1st6a6 a.24.9.1 (A:647-718) V 6.6 53 0.0038 23.5 0.1 27 155-181 46-72 (72)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 6.5 4.2E+02 0.031 18.6 7.1 13 180-192 15-27 (100)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.1 4.6E+02 0.034 18.7 6.5 13 180-192 21-33 (107)
8 d1vhca_ c.1.10.1 (A:) Hypothet 5.6 1.1E+02 0.0077 25.7 1.6 34 148-181 175-208 (212)
9 d1vkma_ c.138.1.1 (A:) Hypothe 5.5 79 0.0057 28.2 0.7 25 340-367 105-129 (292)
10 d1qled_ f.23.8.1 (D:) Bacteria 4.9 4.2E+02 0.03 16.8 4.5 26 324-349 15-40 (43)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=99.14 E-value=4.1e-11 Score=93.48 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhcccccc
Q 017626 288 QAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWI 367 (368)
Q Consensus 288 ~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGGIA 367 (368)
++...++++.++|++.|+++...++..+++ +.|++..+++.++.++++++++++++|+.+|+|+++++|++|++|+|
T Consensus 4 ~il~~l~il~i~~~i~~~i~~~~~~~~~~~---~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gva 80 (86)
T d2vv5a3 4 NIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLV 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455677788899999999999888877653 57899999999999999999999999999999999999999999987
No 2
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=91.50 E-value=0.35 Score=35.75 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 017626 206 CYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAP 278 (368)
Q Consensus 206 iilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll~P 278 (368)
..++..++.|.+.|.+.+.++|..+|+ ..|+.+.+.+.+-.++.++++++..+......
T Consensus 7 ~~l~il~i~~~i~~~i~~~~~~~~~~~--------------~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi 65 (86)
T d2vv5a3 7 AALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALGRVGV 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444455666666666666666655 35788889999999999999999998776533
No 3
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}
Probab=7.26 E-value=74 Score=26.74 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=26.8
Q ss_pred CCCCcccccchhhhhhhhhccchhhhhhhhhhhhh
Q 017626 148 SNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDE 182 (368)
Q Consensus 148 ~~~~~~g~~w~~~~~~~~~~~~~a~~~~~~~~~d~ 182 (368)
+...++|++|+..-+-..+.+.|+.+...++.++.
T Consensus 176 g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~~~v~~ 210 (213)
T d1wbha1 176 KSVLCIGGSWLVPADALEAGDYDRITKLAREAVEG 210 (213)
T ss_dssp TTBSCEEEGGGSCHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEChhhCChhhhhcCCHHHHHHHHHHHHHH
Confidence 55666789999887777778888888888875543
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.58 E-value=1.4e+02 Score=24.32 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=19.4
Q ss_pred CCcchHHHHHHhHHHHHHHHHHHHHHH
Q 017626 245 QVPYEKSFWGALEDPVRYLITFMAFVQ 271 (368)
Q Consensus 245 ~~~~Dd~Ll~ALe~Plr~lI~~ig~~l 271 (368)
...|.+..-+.++++.+..+....+-.
T Consensus 12 t~~y~~~v~~~~~r~~r~~~~y~~l~~ 38 (222)
T d1iwga8 12 THHYTDSVGGILRSTGRYLVLYLIIVV 38 (222)
T ss_dssp HTHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 556788888889999997765444433
No 5
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.57 E-value=53 Score=23.46 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=21.9
Q ss_pred ccchhhhhhhhhccchhhhhhhhhhhh
Q 017626 155 SDSFDKIKDAWKSVVDGVSYTGQKAKD 181 (368)
Q Consensus 155 ~~w~~~~~~~~~~~~~a~~~~~~~~~d 181 (368)
..++|.+++.|...+.-++...++++|
T Consensus 46 ~En~e~~~~~W~~~v~~l~~~vDei~D 72 (72)
T d1st6a6 46 YEHFETMKNQWIDNVEKMTGLVDEAID 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 348999999999999888887777554
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.46 E-value=4.2e+02 Score=18.64 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=8.1
Q ss_pred hhhchHHHHHHhh
Q 017626 180 KDELSPQIEQLLD 192 (368)
Q Consensus 180 ~d~~lP~~q~~l~ 192 (368)
-|+..|..|+..+
T Consensus 15 qd~as~~a~~i~~ 27 (100)
T d3dtub2 15 QPSASPVATQIHW 27 (100)
T ss_dssp CCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 4667777776333
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.10 E-value=4.6e+02 Score=18.75 Aligned_cols=13 Identities=15% Similarity=-0.023 Sum_probs=8.2
Q ss_pred hhhchHHHHHHhh
Q 017626 180 KDELSPQIEQLLD 192 (368)
Q Consensus 180 ~d~~lP~~q~~l~ 192 (368)
-|+..|..++..+
T Consensus 21 qd~~Sp~ae~i~~ 33 (107)
T d3ehbb2 21 QPASSPLAHDQQW 33 (107)
T ss_dssp CCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5667777776333
No 8
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=5.65 E-value=1.1e+02 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.038 Sum_probs=25.1
Q ss_pred CCCCcccccchhhhhhhhhccchhhhhhhhhhhh
Q 017626 148 SNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKD 181 (368)
Q Consensus 148 ~~~~~~g~~w~~~~~~~~~~~~~a~~~~~~~~~d 181 (368)
+...++|++|+..-+-.-+.+.|+.+...+++++
T Consensus 175 g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~~~~~ 208 (212)
T d1vhca_ 175 PNIVACGGSWFVEKKLIQSNNWDEIGRLVREVID 208 (212)
T ss_dssp TTBCCEEECGGGCHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEChhhCCHHHHhcCCHHHHHHHHHHHHH
Confidence 4455678899987777667788888888877544
No 9
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]}
Probab=5.52 E-value=79 Score=28.16 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCchhHHHhhhcccccc
Q 017626 340 VIGLMALAEACGVAVQSILTVGGIGGWI 367 (368)
Q Consensus 340 iIGvL~ILq~lGVnVTaLLAgLGIGGIA 367 (368)
+-+-|.+....|+.| .|-+||||+-
T Consensus 105 VsaTm~iA~~aGI~V---FaTGGIGGVH 129 (292)
T d1vkma_ 105 VSATIFLSRRIGIEV---VVTGGTGGVH 129 (292)
T ss_dssp HHHHHHHHHHHTCCE---EECSCBCCBC
T ss_pred HHHHHHHHHhCCCeE---EEecCccccc
Confidence 345566777889954 7889999973
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.90 E-value=4.2e+02 Score=16.83 Aligned_cols=26 Identities=8% Similarity=0.062 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 324 REKMLALDRISSVGLFVIGLMALAEA 349 (368)
Q Consensus 324 ~t~v~~LsKvlrivIiiIGvL~ILq~ 349 (368)
++.-.++..+.+..|.++++++.|--
T Consensus 15 kTF~gFi~~~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 15 ATFAGFIKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888877654
Done!