Query 017628
Match_columns 368
No_of_seqs 144 out of 174
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 5E-130 1E-134 936.7 26.7 293 69-361 1-294 (294)
2 TIGR01556 rhamnosyltran L-rham 94.8 0.15 3.3E-06 47.4 8.4 127 183-318 72-201 (281)
3 cd04186 GT_2_like_c Subfamily 93.8 0.14 3.1E-06 41.8 5.5 91 184-318 74-165 (166)
4 cd02510 pp-GalNAc-T pp-GalNAc- 93.7 2.5 5.4E-05 39.9 14.2 136 183-320 82-227 (299)
5 cd04185 GT_2_like_b Subfamily 93.3 0.3 6.5E-06 42.4 6.8 100 183-322 78-177 (202)
6 cd02526 GT2_RfbF_like RfbF is 92.4 0.27 5.9E-06 43.5 5.4 123 184-318 75-204 (237)
7 PF13641 Glyco_tranf_2_3: Glyc 90.0 0.94 2E-05 40.0 6.4 125 183-318 85-210 (228)
8 cd02520 Glucosylceramide_synth 89.1 0.54 1.2E-05 41.3 4.2 91 183-317 85-175 (196)
9 cd02525 Succinoglycan_BP_ExoA 86.3 1.4 3E-05 38.9 5.0 125 183-318 80-208 (249)
10 cd04195 GT2_AmsE_like GT2_AmsE 85.9 0.49 1.1E-05 40.8 2.0 117 182-315 78-198 (201)
11 cd06433 GT_2_WfgS_like WfgS an 82.5 1.5 3.3E-05 36.9 3.5 37 183-219 74-111 (202)
12 COG1216 Predicted glycosyltran 81.9 7.3 0.00016 37.4 8.3 137 185-323 85-225 (305)
13 cd06437 CESA_CaSu_A2 Cellulose 75.3 1.8 3.9E-05 38.8 1.8 127 183-319 86-214 (232)
14 cd06442 DPM1_like DPM1_like re 73.7 1.5 3.3E-05 38.3 1.0 35 183-217 77-111 (224)
15 PLN02726 dolichyl-phosphate be 70.2 7.8 0.00017 35.4 4.8 107 108-219 8-128 (243)
16 cd04196 GT_2_like_d Subfamily 67.4 2.9 6.3E-05 36.0 1.3 46 269-318 158-203 (214)
17 cd04188 DPG_synthase DPG_synth 65.4 2.6 5.7E-05 37.1 0.7 34 183-216 81-114 (211)
18 PF00535 Glycos_transf_2: Glyc 63.8 5.2 0.00011 32.2 2.1 39 183-221 77-115 (169)
19 cd06434 GT2_HAS Hyaluronan syn 63.1 3.9 8.4E-05 36.2 1.3 41 183-223 76-116 (235)
20 cd06421 CESA_CelA_like CESA_Ce 61.8 6.3 0.00014 34.6 2.4 124 183-318 83-211 (234)
21 PF03672 UPF0154: Uncharacteri 61.7 4.1 9E-05 32.5 1.1 17 8-24 3-19 (64)
22 cd06913 beta3GnTL1_like Beta 1 61.6 7.5 0.00016 34.4 2.9 129 182-319 82-210 (219)
23 PF13632 Glyco_trans_2_3: Glyc 60.3 14 0.0003 32.1 4.3 122 187-322 1-127 (193)
24 PTZ00260 dolichyl-phosphate be 57.0 7.9 0.00017 38.3 2.4 186 110-313 71-287 (333)
25 cd06435 CESA_NdvC_like NdvC_li 55.0 6.6 0.00014 34.9 1.4 123 184-315 84-206 (236)
26 PF10111 Glyco_tranf_2_2: Glyc 51.8 18 0.00038 34.5 3.8 94 113-207 2-111 (281)
27 PRK01844 hypothetical protein; 50.9 8.1 0.00017 31.6 1.1 17 8-24 10-26 (72)
28 cd06420 GT2_Chondriotin_Pol_N 48.5 47 0.001 28.0 5.5 27 183-209 78-104 (182)
29 PF02434 Fringe: Fringe-like; 43.3 14 0.0003 35.4 1.7 189 111-324 9-213 (252)
30 PRK11677 hypothetical protein; 42.3 13 0.00028 33.4 1.2 19 9-27 7-25 (134)
31 cd00761 Glyco_tranf_GTA_type G 41.4 21 0.00046 27.7 2.2 22 184-205 77-98 (156)
32 PF09258 Glyco_transf_64: Glyc 41.2 28 0.00061 33.4 3.4 94 118-212 8-103 (247)
33 PF06295 DUF1043: Protein of u 40.5 14 0.0003 32.4 1.1 21 8-28 2-22 (128)
34 cd06423 CESA_like CESA_like is 40.4 16 0.00036 29.0 1.4 38 184-221 78-116 (180)
35 PRK00523 hypothetical protein; 39.9 15 0.00033 30.0 1.1 17 8-24 11-27 (72)
36 cd04184 GT2_RfbC_Mx_like Myxoc 38.1 24 0.00053 30.2 2.2 37 183-219 82-119 (202)
37 PRK14583 hmsR N-glycosyltransf 37.6 83 0.0018 32.1 6.3 98 109-211 75-182 (444)
38 PF13506 Glyco_transf_21: Glyc 36.7 23 0.0005 31.8 2.0 124 183-321 30-156 (175)
39 cd04192 GT_2_like_e Subfamily 36.4 27 0.00058 30.3 2.2 37 183-219 81-117 (229)
40 cd06439 CESA_like_1 CESA_like_ 33.4 23 0.0005 31.8 1.4 40 183-222 108-147 (251)
41 cd06427 CESA_like_2 CESA_like_ 33.0 40 0.00087 30.5 2.9 38 183-220 83-122 (241)
42 cd02522 GT_2_like_a GT_2_like_ 32.8 31 0.00066 30.1 2.0 40 183-222 71-110 (221)
43 PF12072 DUF3552: Domain of un 31.6 20 0.00043 33.4 0.7 19 8-26 2-20 (201)
44 TIGR03469 HonB hopene-associat 30.7 47 0.001 33.2 3.2 33 185-217 134-166 (384)
45 PF13712 Glyco_tranf_2_5: Glyc 29.1 1.2E+02 0.0027 28.3 5.5 27 183-209 53-80 (217)
46 PF12996 DUF3880: DUF based on 27.7 30 0.00064 27.5 1.0 16 179-194 13-28 (79)
47 PLN03165 chaperone protein dna 24.2 36 0.00079 29.7 0.9 26 10-35 8-33 (111)
48 PRK05454 glucosyltransferase M 23.8 1.4E+02 0.0031 33.1 5.6 108 108-218 123-255 (691)
49 cd00505 Glyco_transf_8 Members 23.8 1.2E+02 0.0025 28.3 4.3 87 110-208 31-118 (246)
50 PF01762 Galactosyl_T: Galacto 23.8 1.7E+02 0.0036 26.3 5.2 176 94-302 6-186 (195)
51 KOG3708 Uncharacterized conser 23.2 36 0.00079 37.2 0.9 35 174-208 87-121 (681)
52 PF12621 DUF3779: Phosphate me 23.2 46 0.00099 27.7 1.3 44 174-221 34-77 (95)
53 COG0016 PheS Phenylalanyl-tRNA 21.7 68 0.0015 32.9 2.5 22 257-278 271-293 (335)
54 PRK10073 putative glycosyl tra 21.4 82 0.0018 31.0 2.9 105 109-218 6-119 (328)
55 cd06438 EpsO_like EpsO protein 21.2 91 0.002 26.9 2.9 29 183-211 80-108 (183)
56 PF13807 GNVR: G-rich domain o 21.2 42 0.00091 26.6 0.7 19 8-26 58-76 (82)
57 PRK11677 hypothetical protein; 21.2 37 0.0008 30.5 0.4 26 9-34 3-28 (134)
58 PF07745 Glyco_hydro_53: Glyco 20.1 61 0.0013 32.9 1.7 42 95-152 43-86 (332)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=5.2e-130 Score=936.74 Aligned_cols=293 Identities=65% Similarity=1.185 Sum_probs=286.9
Q ss_pred ccccCCCCCCCCCCCcceecCCccccccccCCCCcccCCCCceEEEEEeccccccchhHHhhccccCcEEEEEEeCCCCC
Q 017628 69 IYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTS 148 (368)
Q Consensus 69 ~~~~~~p~g~e~lP~giv~~~sd~~l~~lwg~p~~~~~~~~kyLv~~~VG~~qk~~Vd~~v~kf~~~F~v~LfhYDG~~~ 148 (368)
|+++++|+|+|+||+|||+++|||+||||||.|.+|...++|||||||||+|||++||++|+||++|||||||||||+++
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd 80 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD 80 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence 57899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEEEEeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC-c
Q 017628 149 QWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-L 227 (368)
Q Consensus 149 ~w~d~~ws~~aihv~~~kqtKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~-i 227 (368)
+|+||+||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++||||||||||+++++ +
T Consensus 81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~ 160 (294)
T PF05212_consen 81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI 160 (294)
T ss_pred chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865 9
Q ss_pred ceeeeeecCCceeeeeeccCCCCCCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeE
Q 017628 228 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKI 307 (368)
Q Consensus 228 sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~ki 307 (368)
||++|+|++++++||.+.+++++|+++++||||||||||||||||+|||||||||||||+|||||||+|++|++.+++||
T Consensus 161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~ki 240 (294)
T PF05212_consen 161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKI 240 (294)
T ss_pred eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccE
Confidence 99999999999999988888888999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEeeeeEEecccCCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017628 308 GVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAY 361 (368)
Q Consensus 308 GVVDa~~VvH~g~Ptlg~~g~~~~~~~~~~~vR~r~~~E~~~F~~R~~~A~k~~ 361 (368)
||||||+|+|+++||||+||.++++.++|.+||+||++||++|++||++|+|+|
T Consensus 241 GVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~~ 294 (294)
T PF05212_consen 241 GVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKEY 294 (294)
T ss_pred EEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987
No 2
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.78 E-value=0.15 Score=47.43 Aligned_cols=127 Identities=10% Similarity=0.038 Sum_probs=72.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCCccC-CCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPGLEP-NNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 259 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPALd~-~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 259 (368)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|..-. +.....+...... ... +... ..+.+.+.-
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----~~~~~~~~~ 144 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDG-LLL-RQIS-----LDGLTTPQK 144 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecc-cce-eeec-----ccccCCcee
Confidence 379999999999999988899999988876 56777776522 2211122211111 110 1000 000111100
Q ss_pred cceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEec
Q 017628 260 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 318 (368)
Q Consensus 260 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 318 (368)
+.++=.-..+++|++++.+= ++..++. .++.|.-|..=+.....++.++....+.|.
T Consensus 145 ~~~~~~sg~li~~~~~~~iG-~fde~~f-i~~~D~e~~~R~~~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLG-MMDEELF-IDHVDTEWSLRAQNYGIPLYIDPDIVLEHR 201 (281)
T ss_pred ccEEEcCcceeeHHHHHHhC-CccHhhc-ccchHHHHHHHHHHCCCEEEEeCCEEEEEe
Confidence 11110012368999998873 3334443 466777663333334578999999999995
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.84 E-value=0.14 Score=41.83 Aligned_cols=91 Identities=19% Similarity=0.163 Sum_probs=61.0
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017628 184 AYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 262 (368)
Q Consensus 184 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 262 (368)
.+|||++.|+|...+...+.++.+.+.+. +..+..+. + .|
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------~-------~~------------- 114 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------V-------SG------------- 114 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------C-------ce-------------
Confidence 79999999999999888788887754443 33333222 0 00
Q ss_pred EEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEec
Q 017628 263 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 318 (368)
Q Consensus 263 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 318 (368)
.+.+|++++|+.+-.+ . +....+|-|..+...+.....++..+....+.|.
T Consensus 115 ---~~~~~~~~~~~~~~~~-~-~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 115 ---AFLLVRREVFEEVGGF-D-EDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred ---eeEeeeHHHHHHcCCC-C-hhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 2257899999876322 2 2222377787766555445679999999999995
No 4
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.65 E-value=2.5 Score=39.90 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=74.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC--cceeeeee-cC---CceeeeeeccC--CCCCC-C
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG--LTWQMTKR-RG---DQEVHKVTEEK--PGWCS-D 253 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~--ish~iT~R-~~---~~~vHr~~~~~--~g~C~-~ 253 (368)
+..|||++.|+|..++..-++++++.+.+..-.+.-|.+..-.. ..+.-... .. ...++..-... ...+. .
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998877777787654321 11211110 00 00111100000 00000 0
Q ss_pred CCCCCccceEEeecccccHHHHHHhhhhhcCCCcccch-hhHhhhHhhcCCCCeEEEEeeeeEEeccc
Q 017628 254 PHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWG-LDFALRRCVEPAHEKIGVVDSQWIIHQVI 320 (368)
Q Consensus 254 ~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWG-LDf~~~~c~~~~~~kiGVVDa~~VvH~g~ 320 (368)
+..+..+..+-..+=+++|++|..+=.+ ... ...|| =|.-+..=+.-...+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf-De~-~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGY-DEG-MDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCC-CCc-ccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 1111122233222346899999887433 333 34565 34443212222356888888888999655
No 5
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.25 E-value=0.3 Score=42.40 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=66.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 262 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 262 (368)
+.+||+++.|+|..++.-.++++.+.++..+..+..|....... ++.+
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~- 125 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVG- 125 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEE-
Confidence 57999999999999998888888888775555555443322110 1112
Q ss_pred EEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEecccCC
Q 017628 263 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 322 (368)
Q Consensus 263 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 322 (368)
-+++|++|+.+ ... .+.-..||=|.-+..-+.....++ .+.+..+.|....+
T Consensus 126 -----~~~~~~~~~~~-g~~-~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 126 -----VLISRRVVEKI-GLP-DKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred -----EEEeHHHHHHh-CCC-ChhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence 24889999766 332 233457887876654444446788 99999999975444
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.39 E-value=0.27 Score=43.52 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=62.2
Q ss_pred CccEEEEecccccCCCCChHHHH---HHHH-HhCCcccCCCccCCCC-cceeeeeecCCceeeeeeccCCCCCCCCCCCC
Q 017628 184 AYEYIFIWDEDLGVEHFNGDKYM---ELVK-KHGLDISQPGLEPNNG-LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPP 258 (368)
Q Consensus 184 ~YDYIflwDDDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~S~-ish~iT~R~~~~~vHr~~~~~~g~C~~~~~pp 258 (368)
.||||++.|+|..++...+++++ +..+ ...+-+..|....... ..... .+.....+. ... +. ..+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~----~~---~~~ 144 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPG-VRKSGYKLR--IQK----EG---EEG 144 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccc-eeccCccce--ecc----cc---cCC
Confidence 58999999999999988888885 2222 2234455554432211 11110 011110000 000 00 000
Q ss_pred ccceEEee--cccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEec
Q 017628 259 CAAFVEIM--APVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 318 (368)
Q Consensus 259 cT~FVEiM--APVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 318 (368)
+...-.++ +-+|+|++++.+=.+ ..+.. ..|-|..+..-+.-...++..+....+.|.
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggf-d~~~~-~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGF-DEDLF-IDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCC-CHHHc-CccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 10000111 125799999887443 22322 335566655444445678998888888884
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=89.98 E-value=0.94 Score=39.97 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=64.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCC-CCCCccc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDP-HLPPCAA 261 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~-~~ppcT~ 261 (368)
..+|||++.|+|..++...++++++.+...+..+.|+....... ...++.-......+....... .... ...+|+|
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G 161 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDND-RNWLTRLQDLFFARWHLRFRS--GRRALGVAFLSG 161 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTC-CCEEEE-TT--S-EETTTS-T--T-B----S-B--
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCC-CCHHHHHHHHHHhhhhhhhhh--hhcccceeeccC
Confidence 45999999999999999999999999977888888876644321 111221111110000000000 0000 0111111
Q ss_pred eEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEec
Q 017628 262 FVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 318 (368)
Q Consensus 262 FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 318 (368)
-+=+|+|++++.+-.+ +. ..-|=|+.+..-+.....++.......|.|.
T Consensus 162 ----~~~~~rr~~~~~~g~f--d~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 162 ----SGMLFRRSALEEVGGF--DP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHE 210 (228)
T ss_dssp ----TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE-
T ss_pred ----cEEEEEHHHHHHhCCC--CC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEe
Confidence 1237899999888543 22 3445787776555556789999998889995
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.12 E-value=0.54 Score=41.32 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=55.8
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 262 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 262 (368)
+.+|||++.|.|..++...+.++++.....+..+.++. | ++|
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------~-------~~g- 126 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------C-------AFG- 126 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------------------c-------ccC-
Confidence 57999999999998877777777665432222222211 0 111
Q ss_pred EEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEe
Q 017628 263 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIH 317 (368)
Q Consensus 263 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH 317 (368)
.+-+|+|++++.+=.+ .....-.+=|+.+..-+.....++..++.. ++|
T Consensus 127 ---~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~-~~~ 175 (196)
T cd02520 127 ---KSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWRLGYRVVLSPYV-VMQ 175 (196)
T ss_pred ---ceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHHcCCeEEEcchh-eec
Confidence 2347899999877433 111123466887776665566889888775 555
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.26 E-value=1.4 Score=38.91 Aligned_cols=125 Identities=13% Similarity=0.007 Sum_probs=65.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCC-CcceeeeeecCCceeeeeeccCCCCCCCC---CCCC
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNN-GLTWQMTKRRGDQEVHKVTEEKPGWCSDP---HLPP 258 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S-~ish~iT~R~~~~~vHr~~~~~~g~C~~~---~~pp 258 (368)
+.+|||.+.|+|..++...++++++..++.+..+.+....... ........+........ .....+... ...+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGS---GGSAYRGGAVKIGYVD 156 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhcc---CCcccccccccccccc
Confidence 4799999999999999888999998888877776655432211 10000000000000000 000000000 0000
Q ss_pred ccceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEec
Q 017628 259 CAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 318 (368)
Q Consensus 259 cT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 318 (368)
+.++ =+|+|++|+.+=. +.... ..|-|+.+..-+.....++..+....+.|.
T Consensus 157 ~~~~-----~~~~~~~~~~~g~-~~~~~--~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 157 TVHH-----GAYRREVFEKVGG-FDESL--VRNEDAELNYRLRKAGYKIWLSPDIRVYYY 208 (249)
T ss_pred cccc-----ceEEHHHHHHhCC-CCccc--CccchhHHHHHHHHcCcEEEEcCCeEEEEc
Confidence 1111 1579999987632 22222 346676554333334578999999888885
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.91 E-value=0.49 Score=40.84 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=62.2
Q ss_pred ccCccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCC--CcceeeeeecCCceeeee-eccCCCCCCCCCCC
Q 017628 182 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNN--GLTWQMTKRRGDQEVHKV-TEEKPGWCSDPHLP 257 (368)
Q Consensus 182 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S--~ish~iT~R~~~~~vHr~-~~~~~g~C~~~~~p 257 (368)
.+.+|||++.|+|..++.-.+++.++.++++ +..+..+....-. ...+.... .+.. .+. .......|
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~------ 148 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS--HDDILKFARRRS------ 148 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCC--HHHHHHHhccCC------
Confidence 3679999999999999888888888887654 5656555432211 11111000 0000 000 00000111
Q ss_pred CccceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeE
Q 017628 258 PCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWI 315 (368)
Q Consensus 258 pcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~V 315 (368)
.+..++=+|+|+++..+-.+- .. -++-|+.+...+.....++..+....+
T Consensus 149 ----~~~~~~~~~rr~~~~~~g~~~--~~--~~~eD~~~~~r~~~~g~~~~~~~~~~~ 198 (201)
T cd04195 149 ----PFNHPTVMFRKSKVLAVGGYQ--DL--PLVEDYALWARMLANGARFANLPEILV 198 (201)
T ss_pred ----CCCChHHhhhHHHHHHcCCcC--CC--CCchHHHHHHHHHHcCCceecccHHHh
Confidence 111112368999998875542 22 457787765554334567777655443
No 11
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.48 E-value=1.5 Score=36.90 Aligned_cols=37 Identities=11% Similarity=-0.085 Sum_probs=27.1
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH-HHhCCcccCC
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQP 219 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 219 (368)
+..|||++.|+|..++.-.+.+.++.. +..+..+...
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 468999999999999988888888444 3334544433
No 12
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=81.90 E-value=7.3 Score=37.39 Aligned_cols=137 Identities=16% Similarity=0.049 Sum_probs=83.5
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCc----eeeeeeccCCCCCCCCCCCCcc
Q 017628 185 YEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQ----EVHKVTEEKPGWCSDPHLPPCA 260 (368)
Q Consensus 185 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~----~vHr~~~~~~g~C~~~~~ppcT 260 (368)
|+|++++++|..++...++++++.+++.+-...-+++-.+..-+-.+..+.... ..++..............+.|.
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVV 164 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhh
Confidence 559999999999999999999999999988777777665532222222221100 0010000000011111123344
Q ss_pred ceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEecccCCC
Q 017628 261 AFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSL 323 (368)
Q Consensus 261 ~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Ptl 323 (368)
.++..-+-+++|++++.+=.+ ..+.. .+.-|.-+..=+.-...++..+=.-.|.|..--+-
T Consensus 165 ~~~~G~~~li~~~~~~~vG~~-de~~F-~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 165 ASLSGACLLIRREAFEKVGGF-DERFF-IYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred hhcceeeeEEcHHHHHHhCCC-Ccccc-eeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence 456676778999999988653 33444 66677666444444456899998999999654443
No 13
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=75.29 E-value=1.8 Score=38.76 Aligned_cols=127 Identities=16% Similarity=0.034 Sum_probs=66.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCC-CCcceeeee-ecCCceeeeeeccCCCCCCCCCCCCcc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN-NGLTWQMTK-RRGDQEVHKVTEEKPGWCSDPHLPPCA 260 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~-S~ish~iT~-R~~~~~vHr~~~~~~g~C~~~~~ppcT 260 (368)
+.+|||++.|.|..++...++++..+....+..+.|+-+... ..-++ ++. +.-....+.... ..+. ....+.
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~----~~~~~~ 159 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYHFTIE-QVAR----SSTGLF 159 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhhhhHh-HhhH----hhcCCe
Confidence 589999999999999888888877766555555555543211 00000 000 000000000000 0000 000011
Q ss_pred ceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEecc
Q 017628 261 AFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 319 (368)
Q Consensus 261 ~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 319 (368)
..+=.++-+|+|++|..+-.+ ..+ ..+=|+.+...+.....++..++...+.|..
T Consensus 160 ~~~~g~~~~~rr~~~~~vgg~-~~~---~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~ 214 (232)
T cd06437 160 FNFNGTAGVWRKECIEDAGGW-NHD---TLTEDLDLSYRAQLKGWKFVYLDDVVVPAEL 214 (232)
T ss_pred EEeccchhhhhHHHHHHhCCC-CCC---cchhhHHHHHHHHHCCCeEEEeccceeeeeC
Confidence 111112237899999887544 222 2356777665554456799999888888853
No 14
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.66 E-value=1.5 Score=38.30 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=25.6
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS 217 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 217 (368)
+..|||++.|+|..++.-.++++++.+...+..+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 55699999999988776667777776555555443
No 15
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=70.18 E-value=7.8 Score=35.38 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=59.9
Q ss_pred CCceEEEEEeccccccchhHHhhcc----c--cCcEEEEEEeCCCCCccccc--cc----cCcceEEEEe--cccccccc
Q 017628 108 KPKYLLTITVGLNQKKNIDRMVKKF----S--EDFQIMLFHYDGQTSQWDEF--EW----SKSAIHVSIR--RQTKWWYA 173 (368)
Q Consensus 108 ~~kyLv~~~VG~~qk~~Vd~~v~kf----~--~~F~v~LfhYDG~~~~w~d~--~w----s~~aihv~~~--kqtKWw~a 173 (368)
.++.-|.+++ ++....+..+++.. . .+|.|++ -=||+.|+=.++ ++ ....+.+... +++|=.
T Consensus 8 ~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiiv-vDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~-- 83 (243)
T PLN02726 8 AMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIV-VDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGT-- 83 (243)
T ss_pred CceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEE-EeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHH--
Confidence 4567777777 55556655544322 1 3676665 457776641111 11 1112333322 223211
Q ss_pred ccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCC
Q 017628 174 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQP 219 (368)
Q Consensus 174 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 219 (368)
.+.+-=-.+..|||++.|.|...+...++++++.+++.+.++...
T Consensus 84 -a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 84 -AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred -HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 111111135789999999999988888888898887777666544
No 16
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.43 E-value=2.9 Score=35.97 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=31.1
Q ss_pred cccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEec
Q 017628 269 VFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 318 (368)
Q Consensus 269 VFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 318 (368)
+|+|++++.+-.+. ... .|+-|+.+..++.. ..++..++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~-~~~--~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFP-DAD--VIMHDWWLALLASA-FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhcccc-ccc--cccchHHHHHHHHH-cCceEEcchhHHHHh
Confidence 68999998875542 221 57777666555543 458888888777664
No 17
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=65.35 E-value=2.6 Score=37.11 Aligned_cols=34 Identities=35% Similarity=0.433 Sum_probs=25.0
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDI 216 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeI 216 (368)
+..|||++.|.|...+.-.+.++++.+...+..+
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~ 114 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDI 114 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcE
Confidence 4569999999998887777777777654444443
No 18
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=63.80 E-value=5.2 Score=32.16 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=30.2
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGL 221 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPAL 221 (368)
+..|||++.|+|..++.-.++++++.+++.+-.+.-+..
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 567799999999999999999999999997765544333
No 19
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=63.05 E-value=3.9 Score=36.17 Aligned_cols=41 Identities=5% Similarity=-0.056 Sum_probs=35.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccC
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEP 223 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 223 (368)
+.+|||++.|+|..++...++++++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 58999999999999999999999999887788888776544
No 20
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=61.84 E-value=6.3 Score=34.58 Aligned_cols=124 Identities=12% Similarity=-0.083 Sum_probs=69.2
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH-hCCcccCCCccCC-CCcceeeeeecC---CceeeeeeccCCCCCCCCCCC
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKK-HGLDISQPGLEPN-NGLTWQMTKRRG---DQEVHKVTEEKPGWCSDPHLP 257 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~-~gLeISQPALd~~-S~ish~iT~R~~---~~~vHr~~~~~~g~C~~~~~p 257 (368)
+.+|||++.|+|..++.-.++++++.+.+ .++.+.++..... ......+..... ....+ +....... .
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~ 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYG-VIQPGRDR------W 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHH-HHHHHHhh------c
Confidence 47999999999999999999999999887 6676766543111 000000000000 00000 00000000 0
Q ss_pred CccceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEec
Q 017628 258 PCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 318 (368)
Q Consensus 258 pcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 318 (368)
++ .++=.+.=+|+|++++.+-.+- .+ ..+-|+.+..-+.....+|..++...+.|.
T Consensus 156 ~~-~~~~g~~~~~r~~~~~~ig~~~-~~---~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 156 GA-AFCCGSGAVVRREALDEIGGFP-TD---SVTEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred CC-ceecCceeeEeHHHHHHhCCCC-cc---ceeccHHHHHHHHHcCceEEEecCcccccc
Confidence 11 1221234578999999886542 22 456787776444334568888888777774
No 21
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=61.69 E-value=4.1 Score=32.48 Aligned_cols=17 Identities=35% Similarity=1.028 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhheeee
Q 017628 8 LIITTFIGVLIGYFVGR 24 (368)
Q Consensus 8 ~~~~~~~~~~~g~~~g~ 24 (368)
.|++.++|++.|||++-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888899999999864
No 22
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=61.61 E-value=7.5 Score=34.43 Aligned_cols=129 Identities=13% Similarity=-0.050 Sum_probs=62.6
Q ss_pred ccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccc
Q 017628 182 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAA 261 (368)
Q Consensus 182 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~ 261 (368)
.+.+|||++.|+|..++...+++.+..+.+....+.-+.......-...-..+ ....+... .-.......++ ||+
T Consensus 82 ~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~-~~~- 156 (219)
T cd06913 82 QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTR-WINTLTRE--QLLTQVYTSHG-PTV- 156 (219)
T ss_pred hcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHH-HHHhcCHH--HHHHHHHhhcC-Ccc-
Confidence 36799999999999999888888777776544322222111000000000000 00000000 00000000111 111
Q ss_pred eEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEecc
Q 017628 262 FVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 319 (368)
Q Consensus 262 FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 319 (368)
+ +-.-+++|++|+.+=.+- +..-+.+=|+.+...+.....+|.-+|...+.++.
T Consensus 157 ~--~~~~~~rr~~~~~~g~f~--~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 157 I--MPTWFCSREWFSHVGPFD--EGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred c--cccceeehhHHhhcCCcc--chhccchhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 0 111257999998775432 22225567876655433345789999887766653
No 23
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=60.30 E-value=14 Score=32.06 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=67.0
Q ss_pred EEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceee-----eeeccCCCCCCCCCCCCccc
Q 017628 187 YIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVH-----KVTEEKPGWCSDPHLPPCAA 261 (368)
Q Consensus 187 YIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vH-----r~~~~~~g~C~~~~~ppcT~ 261 (368)
||.+.|+|..++.....+..+.++.-+..+.|+....... ...++.-+...... +......|.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPL--------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCc---------
Confidence 7899999999998888888888885588888888876421 11122222211100 00101122221
Q ss_pred eEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEecccCC
Q 017628 262 FVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 322 (368)
Q Consensus 262 FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 322 (368)
++=.-.=++++++++.+=.+=.+. -.|=|..+..=+.....+++.++...+ |...|.
T Consensus 71 ~~~G~~~~~r~~~l~~vg~~~~~~---~~~ED~~l~~~l~~~G~~~~~~~~~~~-~~~~p~ 127 (193)
T PF13632_consen 71 FLSGSGMLFRREALREVGGFDDPF---SIGEDMDLGFRLRRAGYRIVYVPDAIV-YTEAPP 127 (193)
T ss_pred cccCcceeeeHHHHHHhCcccccc---cccchHHHHHHHHHCCCEEEEecccce-eeeCCC
Confidence 111223468999998762210011 233455554333334589999988844 434444
No 24
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=56.97 E-value=7.9 Score=38.26 Aligned_cols=186 Identities=16% Similarity=0.236 Sum_probs=92.7
Q ss_pred ceEEEEEeccccccchhHHhhcc------------ccCcEEEEEEeCCCCCcccc--ccccCc------ceEEEE--ecc
Q 017628 110 KYLLTITVGLNQKKNIDRMVKKF------------SEDFQIMLFHYDGQTSQWDE--FEWSKS------AIHVSI--RRQ 167 (368)
Q Consensus 110 kyLv~~~VG~~qk~~Vd~~v~kf------------~~~F~v~LfhYDG~~~~w~d--~~ws~~------aihv~~--~kq 167 (368)
+--|.+++ ++...++..+++.. ..++.|+ +.-||+.|+=.+ -++.++ .+++.. +++
T Consensus 71 ~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EII-VVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~ 148 (333)
T PTZ00260 71 DLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEII-IVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNK 148 (333)
T ss_pred EEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEE-EEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCC
Confidence 44455554 44445555555432 1256665 468888775222 112111 245443 355
Q ss_pred ccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHH---hCCcccCCCccC--CC-Cc-ceeeeeecCCcee
Q 017628 168 TKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK---HGLDISQPGLEP--NN-GL-TWQMTKRRGDQEV 240 (368)
Q Consensus 168 tKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~--~S-~i-sh~iT~R~~~~~v 240 (368)
+|-.-.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+-.. ++ .. ..+..++--...+
T Consensus 149 G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~ 225 (333)
T PTZ00260 149 GKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGF 225 (333)
T ss_pred ChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHH
Confidence 6654332211 1257899999999999999999999998875 444443332211 11 00 0000000000111
Q ss_pred eeeeccCCCCCCCCCCCCccceEEeecc--cccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeee
Q 017628 241 HKVTEEKPGWCSDPHLPPCAAFVEIMAP--VFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQ 313 (368)
Q Consensus 241 Hr~~~~~~g~C~~~~~ppcT~FVEiMAP--VFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~ 313 (368)
|.-.. -.| + ++.-+.++. +|+|++++-+...+ ...+|+.|.-+...+.....+|.-|--.
T Consensus 226 ~~l~~---~~~-~------~~i~D~~~Gfk~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 226 HFIVN---TIC-G------TNLKDTQCGFKLFTRETARIIFPSL---HLERWAFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred HHHHH---HHc-C------CCcccCCCCeEEEeHHHHHHHhhhc---cccCccchHHHHHHHHHcCCCEEEEcee
Confidence 10000 001 1 122233333 78999998775432 2348888887776665444455544333
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=54.96 E-value=6.6 Score=34.93 Aligned_cols=123 Identities=13% Similarity=-0.077 Sum_probs=62.8
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccceE
Q 017628 184 AYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFV 263 (368)
Q Consensus 184 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~FV 263 (368)
.||||++.|+|..++.-.+.++++.++..+..+.++.......-..++.... ..... ........+.. ...+ .++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--~~~~-~~~ 158 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMC-YAEYK-GFFDIGMVSRN--ERNA-IIQ 158 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHH-hHHHH-HHHHHHhcccc--ccCc-eEE
Confidence 4999999999999999888888888876677666653221111000110000 00000 00000000000 0011 122
Q ss_pred EeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeE
Q 017628 264 EIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWI 315 (368)
Q Consensus 264 EiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~V 315 (368)
-..+-+|+|++++.+=.+ ..+. -+=|+.+..-+.....++..++...+
T Consensus 159 ~g~~~~~rr~~~~~iGgf-~~~~---~~eD~dl~~r~~~~G~~~~~~~~~~~ 206 (236)
T cd06435 159 HGTMCLIRRSALDDVGGW-DEWC---ITEDSELGLRMHEAGYIGVYVAQSYG 206 (236)
T ss_pred ecceEEEEHHHHHHhCCC-CCcc---ccchHHHHHHHHHCCcEEEEcchhhc
Confidence 222347899999987433 2222 14477665555445678888876444
No 26
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=51.84 E-value=18 Score=34.49 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=52.4
Q ss_pred EEEEecccccc-----chhHHhh---cc--ccCcEEEEEEeCCCCCccc-cc-ccc--CcceEE-EEecccc-ccccccc
Q 017628 113 LTITVGLNQKK-----NIDRMVK---KF--SEDFQIMLFHYDGQTSQWD-EF-EWS--KSAIHV-SIRRQTK-WWYAKRF 176 (368)
Q Consensus 113 v~~~VG~~qk~-----~Vd~~v~---kf--~~~F~v~LfhYDG~~~~w~-d~-~ws--~~aihv-~~~kqtK-Ww~akRf 176 (368)
+.+||..+... ++..++. ++ +.++.|++..++. .++++ ++ +.. ...+++ ....+.+ |-.++..
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s-~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGS-SDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCC-chhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 56778776642 3323333 33 3588888877755 43341 11 111 223322 2222222 3333322
Q ss_pred cCcccccCccEEEEecccccCCCCChHHHHH
Q 017628 177 LHPDVVAAYEYIFIWDEDLGVEHFNGDKYME 207 (368)
Q Consensus 177 LHPdiv~~YDYIflwDDDL~vd~f~i~ry~~ 207 (368)
.----.+.-|||+++|-|+.++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 2223346899999999999999888888888
No 27
>PRK01844 hypothetical protein; Provisional
Probab=50.85 E-value=8.1 Score=31.57 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhheeee
Q 017628 8 LIITTFIGVLIGYFVGR 24 (368)
Q Consensus 8 ~~~~~~~~~~~g~~~g~ 24 (368)
.|++.++|++.|||++-
T Consensus 10 ~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 10 GVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36677888888888753
No 28
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=48.51 E-value=47 Score=27.96 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=20.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELV 209 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Iv 209 (368)
+.+|||+++|+|..++...+.+.++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 579999999999988665556555543
No 29
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=43.30 E-value=14 Score=35.39 Aligned_cols=189 Identities=15% Similarity=0.124 Sum_probs=77.9
Q ss_pred eEEEEEeccccccchhHHhhccccCcEEEEE-EeCCCCCccccccccCc-ceEEEEeccc-----cccccc-ccc-Cccc
Q 017628 111 YLLTITVGLNQKKNIDRMVKKFSEDFQIMLF-HYDGQTSQWDEFEWSKS-AIHVSIRRQT-----KWWYAK-RFL-HPDV 181 (368)
Q Consensus 111 yLv~~~VG~~qk~~Vd~~v~kf~~~F~v~Lf-hYDG~~~~w~d~~ws~~-aihv~~~kqt-----KWw~ak-RfL-HPdi 181 (368)
+..++|....-+..+..+.+-|....+-.+| .-|..-.+. ... ..|+...+.. |+...+ .+. +-.+
T Consensus 9 ~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~l-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~ 83 (252)
T PF02434_consen 9 FIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPSL-----PTVTGVHLVNPNCDAGHCRKTLSCKMAYEYDHFL 83 (252)
T ss_dssp EEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HHH-----HHHHGGGEEE-------------HHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCcccccc-----ccccccccccCCCcchhhHHHHHHHHHHHHHhhh
Confidence 4444555555567788888877644443344 234322211 111 1233222211 111112 111 1223
Q ss_pred ccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccc
Q 017628 182 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAA 261 (368)
Q Consensus 182 v~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~ 261 (368)
...+||+++.|||..| +++++.++..+++- +||-.=...+..++++...+.. ..+ ....+-.
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~~--~~~~yiG~~~~~~~~~~~~~~~-----~~~--------~~~~~~~ 145 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYDP--SEPIYIGRPSGDRPIEIIHRFN-----PNK--------SKDSGFW 145 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS-T--TS--EEE-EE-----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCCC--ccCEEeeeeccCccceeecccc-----ccc--------cCcCceE
Confidence 4578999999999987 67777777765542 3432211111112222100000 000 0111234
Q ss_pred eEEeec-ccccHHHHHHh--hh----hhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEecccCCCC
Q 017628 262 FVEIMA-PVFSREAWRCV--WH----MIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLG 324 (368)
Q Consensus 262 FVEiMA-PVFSR~Awrcv--w~----miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Ptlg 324 (368)
|.-..| -|+||.+.+.+ |. +.+.+..-.+.=|..+++|++.- -+|=.+++ .-.|.-+|.|.
T Consensus 146 f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~-lgv~lt~s-~~fhs~~~~l~ 213 (252)
T PF02434_consen 146 FATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENL-LGVPLTHS-PLFHSHLENLQ 213 (252)
T ss_dssp EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHT-T---EEE--TT---SSS-GG
T ss_pred eeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhc-CCcceeec-hhhcccCcccc
Confidence 555554 47899999777 22 22223333567899999999741 34444554 55677778764
No 30
>PRK11677 hypothetical protein; Provisional
Probab=42.29 E-value=13 Score=33.38 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhheeeeccc
Q 017628 9 IITTFIGVLIGYFVGRSFQ 27 (368)
Q Consensus 9 ~~~~~~~~~~g~~~g~s~p 27 (368)
+++.++|+++|||+|-..+
T Consensus 7 ~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4555666666666665443
No 31
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=41.37 E-value=21 Score=27.67 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=19.1
Q ss_pred CccEEEEecccccCCCCChHHH
Q 017628 184 AYEYIFIWDEDLGVEHFNGDKY 205 (368)
Q Consensus 184 ~YDYIflwDDDL~vd~f~i~ry 205 (368)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 6999999999999888777776
No 32
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=41.22 E-value=28 Score=33.44 Aligned_cols=94 Identities=10% Similarity=0.254 Sum_probs=51.9
Q ss_pred ccccccchhHHhhccc--cCcEEEEEEeCCCCCccccccccCcceEEEEeccccccccccccCcccccCccEEEEecccc
Q 017628 118 GLNQKKNIDRMVKKFS--EDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDL 195 (368)
Q Consensus 118 G~~qk~~Vd~~v~kf~--~~F~v~LfhYDG~~~~w~d~~ws~~aihv~~~kqtKWw~akRfLHPdiv~~YDYIflwDDDL 195 (368)
..+....+.++|+... +.=.=+++..-+...--...+|....+-|....+++=-.-.||+-.+.+ .=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i-~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEI-ETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcccc-CcceEEEecCCc
Confidence 4444555666666553 2333233333332222223456666666777777666677888744333 479999999999
Q ss_pred cCCCCChHHHHHHHHHh
Q 017628 196 GVEHFNGDKYMELVKKH 212 (368)
Q Consensus 196 ~vd~f~i~ry~~Ivr~~ 212 (368)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999998888887744
No 33
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.54 E-value=14 Score=32.36 Aligned_cols=21 Identities=38% Similarity=0.778 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhheeeecccc
Q 017628 8 LIITTFIGVLIGYFVGRSFQS 28 (368)
Q Consensus 8 ~~~~~~~~~~~g~~~g~s~p~ 28 (368)
.|+..++|+++||+++-.+..
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 467788888888888766543
No 34
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=40.44 E-value=16 Score=29.05 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=26.1
Q ss_pred CccEEEEecccccCCCCChHHH-HHHHHHhCCcccCCCc
Q 017628 184 AYEYIFIWDEDLGVEHFNGDKY-MELVKKHGLDISQPGL 221 (368)
Q Consensus 184 ~YDYIflwDDDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 221 (368)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999998887667776 3333444444444444
No 35
>PRK00523 hypothetical protein; Provisional
Probab=39.87 E-value=15 Score=30.02 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhheeee
Q 017628 8 LIITTFIGVLIGYFVGR 24 (368)
Q Consensus 8 ~~~~~~~~~~~g~~~g~ 24 (368)
.|++.++|++.|||++-
T Consensus 11 ~i~~li~G~~~Gffiar 27 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667778888888753
No 36
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=38.06 E-value=24 Score=30.23 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.2
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH-HHhCCcccCC
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQP 219 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 219 (368)
+.+|||++.|+|..++.-.++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888888888887 4455555543
No 37
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=37.58 E-value=83 Score=32.08 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=56.3
Q ss_pred CceEEEEEeccccccchhHHhhcc---c-cCcEEEEEEeCCCCCccccc--cccC--cceEEEE--eccccccccccccC
Q 017628 109 PKYLLTITVGLNQKKNIDRMVKKF---S-EDFQIMLFHYDGQTSQWDEF--EWSK--SAIHVSI--RRQTKWWYAKRFLH 178 (368)
Q Consensus 109 ~kyLv~~~VG~~qk~~Vd~~v~kf---~-~~F~v~LfhYDG~~~~w~d~--~ws~--~aihv~~--~kqtKWw~akRfLH 178 (368)
|+.-|.+++=... .++.+.++.. . ++|+|++ -=||+.|+..+. ++.. ..+++.. .+++|=.-.+.-+
T Consensus 75 p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~eIiv-VdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl- 151 (444)
T PRK14583 75 PLVSILVPCFNEG-LNARETIHAALAQTYTNIEVIA-INDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGA- 151 (444)
T ss_pred CcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCeEEEE-EECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHH-
Confidence 4555666654433 3454444433 1 4788775 558888765331 1111 1234433 4566533222211
Q ss_pred cccccCccEEEEecccccCCCCChHHHHHHHHH
Q 017628 179 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK 211 (368)
Q Consensus 179 Pdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 211 (368)
..+.||||.+.|.|-.++...+.++.+-+.+
T Consensus 152 --~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 152 --AAARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred --HhCCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 2368999999999999988888877775543
No 38
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=36.75 E-value=23 Score=31.84 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=70.1
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH--hCCcccCCCccCCCCc-ceeeeeecCCceeeeeeccCCCCCCCCCCCCc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKK--HGLDISQPGLEPNNGL-TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 259 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~S~i-sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 259 (368)
+.||||++.|+|+.++.-.+.++..-... .|+-=+.|-..+..++ +.-...-. ..|-...- ...=
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~---~~~~~~~~---------a~~~ 97 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFF---NFLPGVLQ---------ALGG 97 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHH---hHHHHHHH---------HhcC
Confidence 79999999999999988777777765544 3332222222222211 00000000 01100000 0012
Q ss_pred cceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEecccC
Q 017628 260 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIP 321 (368)
Q Consensus 260 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~P 321 (368)
++|+=.|+=.|+|++++..= -+ +.+.+.-.=||.++..+.....+|...... |.|..+|
T Consensus 98 ~~~~~G~~m~~rr~~L~~~G-G~-~~l~~~ladD~~l~~~~~~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIG-GF-EALADYLADDYALGRRLRARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred CCceecceeeeEHHHHHHcc-cH-HHHhhhhhHHHHHHHHHHHCCCeEEEcchh-eeecccC
Confidence 56777888899999998662 11 344455667999999888777787776643 4453333
No 39
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.43 E-value=27 Score=30.35 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=28.1
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCC
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQP 219 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 219 (368)
+.+|||++.|+|..++.-.++++++...+.+-...+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 117 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG 117 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEee
Confidence 5799999999999998877888888666555444333
No 40
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=33.35 E-value=23 Score=31.75 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=31.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCcc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLE 222 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 222 (368)
+..|||++.|+|...+...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3569999999999999877888888887666666665554
No 41
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=32.97 E-value=40 Score=30.53 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=29.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCC
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPG 220 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPA 220 (368)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999988888888877643 34444544
No 42
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.82 E-value=31 Score=30.08 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=30.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCcc
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLE 222 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 222 (368)
+.+|||++.|+|..++...+++++......+..++.+...
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 4589999999999999888888877666666655555443
No 43
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.63 E-value=20 Score=33.37 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhheeeecc
Q 017628 8 LIITTFIGVLIGYFVGRSF 26 (368)
Q Consensus 8 ~~~~~~~~~~~g~~~g~s~ 26 (368)
.|+++++|+++|+++|..+
T Consensus 2 ~ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLV 20 (201)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777665
No 44
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=30.65 E-value=47 Score=33.17 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=29.4
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 017628 185 YEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS 217 (368)
Q Consensus 185 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 217 (368)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999889999999988776654
No 45
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=29.15 E-value=1.2e+02 Score=28.31 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=21.6
Q ss_pred cCccEEEEecccccCCCCC-hHHHHHHH
Q 017628 183 AAYEYIFIWDEDLGVEHFN-GDKYMELV 209 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~-i~ry~~Iv 209 (368)
+.++|+++..||+.+.+.+ +++.+++.
T Consensus 53 a~~~ylvflHqDv~i~~~~~l~~il~~~ 80 (217)
T PF13712_consen 53 AKAKYLVFLHQDVFIINENWLEDILEIF 80 (217)
T ss_dssp --SSEEEEEETTEE-SSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCeEEcchhHHHHHHHHH
Confidence 7899999999999998766 78888888
No 46
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=27.65 E-value=30 Score=27.50 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=13.9
Q ss_pred cccccCccEEEEeccc
Q 017628 179 PDVVAAYEYIFIWDED 194 (368)
Q Consensus 179 Pdiv~~YDYIflwDDD 194 (368)
..+..+|||||++|.+
T Consensus 13 ~~i~~~~~~iFt~D~~ 28 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS 28 (79)
T ss_pred hhhCCCCCEEEEECHH
Confidence 4778899999999985
No 47
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=24.22 E-value=36 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=22.7
Q ss_pred HHHHHHHHhhheeeeccccceeeccc
Q 017628 10 ITTFIGVLIGYFVGRSFQSVSFSKIH 35 (368)
Q Consensus 10 ~~~~~~~~~g~~~g~s~p~~~~~~~~ 35 (368)
+++++.+++|+.+||.+|++-.|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~q~~ 33 (111)
T PLN03165 8 IVAISVGVVSIAVGIGIPVFYETQID 33 (111)
T ss_pred hhhhhhhhhhhhhccCCcEEEEEeee
Confidence 57788889999999999999888766
No 48
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=23.81 E-value=1.4e+02 Score=33.14 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=62.1
Q ss_pred CCceEEEEEecccccc----chhHHhhc-----cccCcEEEEEEeCCCCCccccc------cccC-----cceEEEEecc
Q 017628 108 KPKYLLTITVGLNQKK----NIDRMVKK-----FSEDFQIMLFHYDGQTSQWDEF------EWSK-----SAIHVSIRRQ 167 (368)
Q Consensus 108 ~~kyLv~~~VG~~qk~----~Vd~~v~k-----f~~~F~v~LfhYDG~~~~w~d~------~ws~-----~aihv~~~kq 167 (368)
.++.-|.+|+=-...+ .+.++.+. ..++|++.++. |++.++-... +..+ .-++|..+..
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLd-D~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~ 201 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILS-DTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 201 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 3456666666443321 34444432 34689997765 7766542111 1111 1355544422
Q ss_pred ccccccccccCcccc----cCccEEEEecccccCCCCChHHHHHHHH-HhCCcccC
Q 017628 168 TKWWYAKRFLHPDVV----AAYEYIFIWDEDLGVEHFNGDKYMELVK-KHGLDISQ 218 (368)
Q Consensus 168 tKWw~akRfLHPdiv----~~YDYIflwDDDL~vd~f~i~ry~~Ivr-~~gLeISQ 218 (368)
. ...|+-.--|.+ ..||||.+.|=|..++...+.+++..++ .-++-+-|
T Consensus 202 n--~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 202 N--VGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred C--CCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 2 223332111222 6899999999999999999999999986 44666666
No 49
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=23.77 E-value=1.2e+02 Score=28.34 Aligned_cols=87 Identities=17% Similarity=0.081 Sum_probs=50.9
Q ss_pred ceEEEEEeccccccchhHHhhcc-ccCcEEEEEEeCCCCCccccccccCcceEEEEeccccccccccccCcccccCccEE
Q 017628 110 KYLLTITVGLNQKKNIDRMVKKF-SEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYI 188 (368)
Q Consensus 110 kyLv~~~VG~~qk~~Vd~~v~kf-~~~F~v~LfhYDG~~~~w~d~~ws~~aihv~~~kqtKWw~akRfLHPdiv~~YDYI 188 (368)
-.+..++-|++. .+.+++-+-. ..++.+-+..++- .++..+++. ...-++.-+ .||+=|+++..||-|
T Consensus 31 ~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~~-------~~~~~~~~y-~RL~i~~llp~~~kv 99 (246)
T cd00505 31 LRFHVLTNPLSD-TFKAALDNLRKLYNFNYELIPVDI--LDSVDSEHL-------KRPIKIVTL-TKLHLPNLVPDYDKI 99 (246)
T ss_pred eEEEEEEccccH-HHHHHHHHHHhccCceEEEEeccc--cCcchhhhh-------cCcccccee-HHHHHHHHhhccCeE
Confidence 456666666554 2333322211 2467777666643 444444332 011123333 446568998889999
Q ss_pred EEecccccCCCCChHHHHHH
Q 017628 189 FIWDEDLGVEHFNGDKYMEL 208 (368)
Q Consensus 189 flwDDDL~vd~f~i~ry~~I 208 (368)
...|.|+.+- -+++.++++
T Consensus 100 lYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 100 LYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEcCCeeec-cCHHHHhhc
Confidence 9999999886 688888865
No 50
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=23.75 E-value=1.7e+02 Score=26.28 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=87.9
Q ss_pred cccccCCCCcccCCCCceEEEEEecccc--ccchhHHhhcccc-CcEEEEEEeCCCCCccccccccCcceEEEEeccccc
Q 017628 94 LRRLWGEPSEDLKKKPKYLLTITVGLNQ--KKNIDRMVKKFSE-DFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKW 170 (368)
Q Consensus 94 l~~lwg~p~~~~~~~~kyLv~~~VG~~q--k~~Vd~~v~kf~~-~F~v~LfhYDG~~~~w~d~~ws~~aihv~~~kqtKW 170 (368)
+|.-||++..-. ..+.-+.+-+|... ...++..+++=.+ .=||+++.+ .|.+..+. .+.+ -.-+|
T Consensus 6 IR~TW~~~~~~~--~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K~~-----~~~~w 73 (195)
T PF01762_consen 6 IRETWGNQRNFK--GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LKTL-----AGLKW 73 (195)
T ss_pred HHHHHhcccccC--CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HHHH-----HHHHH
Confidence 467788766422 24566777778777 4456665655233 347776544 34443321 0011 11222
Q ss_pred cccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCce--eeeeeccCC
Q 017628 171 WYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQE--VHKVTEEKP 248 (368)
Q Consensus 171 w~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~--vHr~~~~~~ 248 (368)
-. + ...+++||+..|||+-| ++.++++..++.-.+.+.+.+... .....-..|.+..+ +....+
T Consensus 74 ~~-~------~c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~-~~~~~~~~r~~~~kw~v~~~~y--- 139 (195)
T PF01762_consen 74 AS-K------HCPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG-CIKNGPPIRDPSSKWYVSEEEY--- 139 (195)
T ss_pred HH-h------hCCchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc-cccCCccccccccCceeeeeec---
Confidence 21 1 12358999999999988 556666666655222222222111 11111122222222 111000
Q ss_pred CCCCCCCCCCccceEEeecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcC
Q 017628 249 GWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEP 302 (368)
Q Consensus 249 g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~ 302 (368)
+....||+ ....+-++|+++.+.+....+ ....-+-=|-.++.|++.
T Consensus 140 ---~~~~yP~y---~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 ---PDDYYPPY---CSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ---ccccCCCc---CCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 11234443 346778899999988876543 222223334445888763
No 51
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.24 E-value=36 Score=37.21 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.9
Q ss_pred ccccCcccccCccEEEEecccccCCCCChHHHHHH
Q 017628 174 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMEL 208 (368)
Q Consensus 174 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~I 208 (368)
-++||--+.+.|||++|--||..|++|-.-+++.-
T Consensus 87 l~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~h 121 (681)
T KOG3708|consen 87 LGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDH 121 (681)
T ss_pred HHHHHHhhccccceEEEecCcceecHHHHHHHHhh
Confidence 34566668899999999999999988877666643
No 52
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=23.23 E-value=46 Score=27.72 Aligned_cols=44 Identities=34% Similarity=0.544 Sum_probs=34.4
Q ss_pred ccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCc
Q 017628 174 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGL 221 (368)
Q Consensus 174 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPAL 221 (368)
..|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+-
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA 77 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGA 77 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCe
Confidence 4589999999999999999999997644 4455666777765543
No 53
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=21.73 E-value=68 Score=32.90 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=19.6
Q ss_pred CCccceEEee-cccccHHHHHHh
Q 017628 257 PPCAAFVEIM-APVFSREAWRCV 278 (368)
Q Consensus 257 ppcT~FVEiM-APVFSR~Awrcv 278 (368)
+-|++|+|++ |-+|+.+-++.+
T Consensus 271 ~~~~~WlEi~G~Gmv~P~VL~~~ 293 (335)
T COG0016 271 PGCGGWLEILGCGMVHPNVLEAV 293 (335)
T ss_pred cCCCCEEEEecccccCHHHHHhc
Confidence 5589999999 999999999877
No 54
>PRK10073 putative glycosyl transferase; Provisional
Probab=21.37 E-value=82 Score=31.01 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=58.9
Q ss_pred CceEEEEEeccccccchhHHhhcc----ccCcEEEEEEeCCCCCcccc--ccccC--cceEEEE-eccccccccccccCc
Q 017628 109 PKYLLTITVGLNQKKNIDRMVKKF----SEDFQIMLFHYDGQTSQWDE--FEWSK--SAIHVSI-RRQTKWWYAKRFLHP 179 (368)
Q Consensus 109 ~kyLv~~~VG~~qk~~Vd~~v~kf----~~~F~v~LfhYDG~~~~w~d--~~ws~--~aihv~~-~kqtKWw~akRfLHP 179 (368)
|+.-|.++| ++....+.+.++-. ..+|.|++ .=||++|+=.+ -+|.+ ..+++.. .+++. +.....-
T Consensus 6 p~vSVIIP~-yN~~~~L~~~l~Sl~~Qt~~~~EIIi-VdDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~---~~arN~g 80 (328)
T PRK10073 6 PKLSIIIPL-YNAGKDFRAFMESLIAQTWTALEIII-VNDGSTDNSVEIAKHYAENYPHVRLLHQANAGV---SVARNTG 80 (328)
T ss_pred CeEEEEEec-cCCHHHHHHHHHHHHhCCCCCeEEEE-EeCCCCccHHHHHHHHHhhCCCEEEEECCCCCh---HHHHHHH
Confidence 456667776 33334444444433 25788776 45888764111 11211 1233322 22221 1111111
Q ss_pred ccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccC
Q 017628 180 DVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQ 218 (368)
Q Consensus 180 div~~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 218 (368)
=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 81 l~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 81 LAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 123577999999999888888888899988888777754
No 55
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=21.23 E-value=91 Score=26.87 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=24.6
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH
Q 017628 183 AAYEYIFIWDEDLGVEHFNGDKYMELVKK 211 (368)
Q Consensus 183 ~~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 211 (368)
+.||||++.|.|..++...+.++.+.+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888877653
No 56
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.20 E-value=42 Score=26.64 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhheeeecc
Q 017628 8 LIITTFIGVLIGYFVGRSF 26 (368)
Q Consensus 8 ~~~~~~~~~~~g~~~g~s~ 26 (368)
..+...+|+++|+++|+.+
T Consensus 58 ~~lil~l~~~~Gl~lgi~~ 76 (82)
T PF13807_consen 58 RALILALGLFLGLILGIGL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566788888887754
No 57
>PRK11677 hypothetical protein; Provisional
Probab=21.16 E-value=37 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhheeeeccccceeecc
Q 017628 9 IITTFIGVLIGYFVGRSFQSVSFSKI 34 (368)
Q Consensus 9 ~~~~~~~~~~g~~~g~s~p~~~~~~~ 34 (368)
.+.+++|.|+|++||..+-.+..+++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchh
Confidence 57889999999999999888765554
No 58
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.07 E-value=61 Score=32.95 Aligned_cols=42 Identities=26% Similarity=0.707 Sum_probs=26.6
Q ss_pred ccccCCCCcccCCCCceEEEEEeccccccchhHHhhccc-cCcEEEE-EEeCCCCCcccc
Q 017628 95 RRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFS-EDFQIML-FHYDGQTSQWDE 152 (368)
Q Consensus 95 ~~lwg~p~~~~~~~~kyLv~~~VG~~qk~~Vd~~v~kf~-~~F~v~L-fhYDG~~~~w~d 152 (368)
-|+|-+|.. -|....+.+-++.|+-. ..+.||| ||| -|-|.|
T Consensus 43 lRvwv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHY---SD~WaD 86 (332)
T PF07745_consen 43 LRVWVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHY---SDFWAD 86 (332)
T ss_dssp EEE-SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-S---SSS--B
T ss_pred EEeccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecc---cCCCCC
Confidence 488998875 56666777777777654 6899999 999 356655
Done!