BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017629
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 208/355 (58%), Gaps = 28/355 (7%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP + P+V V+ WY
Sbjct: 31 LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 88
Query: 89 LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S D+ F D + D R +Q A I+ RHN+VVP MA G+ + K V
Sbjct: 89 VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 147
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNA 201
I FLDRFY+SRI IRMLI QH + NP P H IG ID S V ++A
Sbjct: 148 NQ--NIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDA 204
Query: 202 SEHARCVCLREYGSAPDFNI--YGDPSFTFP----YVPSHLHLMVFELVKNSLRAVEERY 255
+ A+ +C + Y ++PD I + T P YVPSHL+ M+FEL KN++RA E +
Sbjct: 205 YDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESH 264
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315
+S PPI+I+VA G ED++IK+SD GGG+P + ++F+Y+YSTA P
Sbjct: 265 -ESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQ------PG 317
Query: 316 DKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368
GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L L DS E LP
Sbjct: 318 TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 372
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 207/355 (58%), Gaps = 28/355 (7%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP + P+V V+ WY
Sbjct: 18 LSMKQFLDFGSSNACEK--TSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWY 75
Query: 89 LDSFRDLRSFPDIRSTSDERDFTQMIKA---IKVRHNNVVPMMALGLQQLKKEMDPKIVY 145
+ S D+ F D + D R +Q A I+ RHN+VVP MA G+ + K V
Sbjct: 76 VQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVS 134
Query: 146 EDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVQVARNA 201
I FLDRFY+SRI IRMLI QH + NP P H IG ID + +V ++A
Sbjct: 135 NQ--NIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCNVSEVVKDA 191
Query: 202 SEHARCVCLREYGSAPDFNIY------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERY 255
+ A+ +C + Y ++PD I YVPSHL+ M+FEL KN++RA E +
Sbjct: 192 YDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESH 251
Query: 256 MDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAA 315
+S + PPI+++VA G ED++IK+SD GGG+P + ++F+Y+YSTA P
Sbjct: 252 -ESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQ------PG 304
Query: 316 DKGT-MAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368
GT +AG+GYGLPISRLYA+YF GDLQ+ SMEG+GTDA ++L L DS E LP
Sbjct: 305 TGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 359
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 213/369 (57%), Gaps = 28/369 (7%)
Query: 16 EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGL 75
+++ R+ + +S++ ++FG + S FL KELP+R+A E+ LP L
Sbjct: 27 KQIERYSRFSPSPLSIKQFLDFGRDNACEK--TSYMFLRKELPVRLANTMREVNLLPDNL 84
Query: 76 SEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGL 132
+P+V V+ WY+ SF +L + + +S D + +F Q++ ++ RHN+VVP MA G+
Sbjct: 85 LNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGV 143
Query: 133 QQLKKEM--DPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIG 186
+ K++ DP I I FLDRFY +RI RMLI QH L NP P H IG
Sbjct: 144 IEYKEKFGFDPFIS----TNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKH-IG 198
Query: 187 YIDTKMSPVQVARNASEHARCVCLREYGSAPD-----FNIYG-DPSFTFPYVPSHLHLMV 240
ID + V ++A E A+ +C + Y AP+ FN D YVPSHL M+
Sbjct: 199 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHML 258
Query: 241 FELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLY 300
FEL KNS+RA E Y D + P ++ +V G ED++IK+SD GGG+P + ++F Y+Y
Sbjct: 259 FELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMY 318
Query: 301 STARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL 360
STA P E T A +AG+GYGLPISRLYARYF GDL++ SMEG GTDA ++L L
Sbjct: 319 STAPRPSLEPTRAAP----LAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKAL 374
Query: 361 -GDSQEPLP 368
+S E LP
Sbjct: 375 SSESFERLP 383
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 218/370 (58%), Gaps = 26/370 (7%)
Query: 13 SLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLP 72
S+ EV + + +S++ +++FGS+ + S FL +ELP+R+A E++ LP
Sbjct: 2 SVPREVEHFSRYSPSPLSMKQLLDFGSENACER--TSFAFLRQELPVRLANILKEIDILP 59
Query: 73 YGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMA 129
L +V V+ WY+ S DL F + +S D++ DF + ++ RH+NVVP MA
Sbjct: 60 TQLVNTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMA 118
Query: 130 LGLQQLKK--EMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCI 185
G+ + K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P I
Sbjct: 119 QGIIEYKDACTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHI 174
Query: 186 GYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNI------YGDPSFTFPYVPSHLHLM 239
G ID V V ++A E +R +C + Y S+P+ + + D YVPSHLH M
Sbjct: 175 GSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHM 234
Query: 240 VFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYL 299
+FEL KN++RA E + ++ PI +IV G ED+TIK+SD GGG+P + ++F+Y
Sbjct: 235 LFELFKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYT 293
Query: 300 YSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSR 359
YSTA P+ +N+ A +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L
Sbjct: 294 YSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKA 349
Query: 360 L-GDSQEPLP 368
L +S E LP
Sbjct: 350 LSSESIEKLP 359
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 216/366 (59%), Gaps = 26/366 (7%)
Query: 17 EVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLS 76
EV + + +S++ +++FGS+ + S FL +ELP+R+A E++ LP L
Sbjct: 6 EVEHFSRYSPSPLSMKQLLDFGSENACER--TSFAFLRQELPVRLANILKEIDILPTQLV 63
Query: 77 EKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQ 133
+V V+ WY+ S DL F + +S D++ DF + ++ RH+NVVP MA G+
Sbjct: 64 NTSSVQLVKSWYIQSLMDLVEFHE-KSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 122
Query: 134 QLKK--EMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYID 189
+ K +DP + ++L FLDRFYM+RI RML+ QH+ + + + P IG ID
Sbjct: 123 EYKDACTVDP-VTNQNL---QYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSID 178
Query: 190 TKMSPVQVARNASEHARCVCLREYGSAPDFNI------YGDPSFTFPYVPSHLHLMVFEL 243
V V ++A E +R +C + Y S+P+ + + D YVPSHLH M+FEL
Sbjct: 179 PNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFEL 238
Query: 244 VKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTA 303
KN++RA E + ++ PI +IV G ED+TIK+SD GGG+P + ++F+Y YSTA
Sbjct: 239 FKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTA 297
Query: 304 RNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRL-GD 362
P+ +N+ A +AG+GYGLPISRLYA+YF GDL + S+ GYGTDA ++L L +
Sbjct: 298 PTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSE 353
Query: 363 SQEPLP 368
S E LP
Sbjct: 354 SIEKLP 359
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 209/358 (58%), Gaps = 31/358 (8%)
Query: 29 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWY 88
+S++ ++FGS + S FL +ELP+R+A E+ LP L P+V V+ WY
Sbjct: 28 LSMKQFLDFGS--VNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWY 85
Query: 89 LDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKI 143
+ S ++L F D +S D + DFT + I+ RHN+V+P MA G+ + K+ +DP
Sbjct: 86 IQSLQELLDFKD-KSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVT 144
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVEL---HNPNPPPH--CIGYIDTKMSPVQVA 198
+ FLDRFYMSRI IRML+ QH L P H IG I+ + ++V
Sbjct: 145 S----QNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVI 200
Query: 199 RNASEHARCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAV 251
++ E+AR +C Y ++P+ + G P YVPSHL+ MVFEL KN++RA
Sbjct: 201 KDGYENARRLCDLYYINSPELELEELNAKSPGQP-IQVVYVPSHLYHMVFELFKNAMRAT 259
Query: 252 EERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENT 311
E + + V PPI++ V G ED+T+K+SD GGG+P + ++F Y+YSTA P E +
Sbjct: 260 MEHHANRG-VYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETS 318
Query: 312 DLAADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGTDAYLHLSRLG-DSQEPLP 368
+AG+GYGLPISRLYA+YF GDL++ S+EGYGTDA +++ L DS E LP
Sbjct: 319 RAVP----LAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLP 372
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 207/374 (55%), Gaps = 23/374 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ V ++ T MM + + D +LL S ++L +ELP+RI
Sbjct: 17 SKTVTSFYNQSAIDVVAEKPSVRLTPT----MMLYSGRSQDGSHLLKSGRYLQQELPVRI 72
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 73 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 132
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+GIRML H+ LH P
Sbjct: 133 KDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 186
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 187 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 244
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301
EL+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++
Sbjct: 245 ELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFT 304
Query: 302 TAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGT 351
TA +PL + D+ G M G+G+GLP SR YA Y GG LQ+ S++G GT
Sbjct: 305 TAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGT 364
Query: 352 DAYLHLSRLGDSQE 365
D YL L + +E
Sbjct: 365 DVYLRLRHIDGREE 378
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 207/374 (55%), Gaps = 23/374 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ V ++ T MM + + D +LL S ++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDVVAEKPSVRLTPT----MMLYSGRSQDGSHLLKSGRYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+GIRML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 216
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 217 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301
EL+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFT 334
Query: 302 TAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGT 351
TA +PL + D+ G M G+G+GLP SR YA Y GG LQ+ S++G GT
Sbjct: 335 TAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGT 394
Query: 352 DAYLHLSRLGDSQE 365
D YL L + +E
Sbjct: 395 DVYLRLRHIDGREE 408
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 206/374 (55%), Gaps = 23/374 (6%)
Query: 3 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTD-KNLLISAQFLHKELPIRI 61
+K ++ +++S I+ V ++ T MM + + D +LL S ++L +ELP+RI
Sbjct: 47 SKTVTSFYNQSAIDVVAEKPSVRLTPT----MMLYSGRSQDGSHLLKSGRYLQQELPVRI 102
Query: 62 ARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRH 121
A R +LP+ + P +L V + Y+ +F+ L FP I+ +DE + Q+++ + H
Sbjct: 103 AHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 162
Query: 122 NNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP 181
+VV ++A GL++ +K + ED + FLD+ SR+G RML H+ LH P
Sbjct: 163 KDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGFRMLATHHLALHEDKPD 216
Query: 182 PHCIGYIDTKMSPVQVARNASEHARCVCLREYGSAPDFNIYGDPSFTFPYVPSHLHLMVF 241
+G I T++SP ++ + AR +C +YG+AP I G + FP++P L ++
Sbjct: 217 --FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP 274
Query: 242 ELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYS 301
EL+KN++RA E ++D+ P + I +A+ D+ I++SD GGGI L ++ Y ++
Sbjct: 275 ELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFT 334
Query: 302 TAR--------NPLDENTDL--AADKGTMAGYGYGLPISRLYARYFGGDLQIISMEGYGT 351
TA +PL + D+ G M G+G+GLP SR YA Y GG LQ+ S++G GT
Sbjct: 335 TAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGT 394
Query: 352 DAYLHLSRLGDSQE 365
D YL L + +E
Sbjct: 395 DVYLRLRHIDGREE 408
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 278 IKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYF 337
I V DEG GIP+ + K+F Y + A + G G GL I++ +
Sbjct: 80 ISVKDEGIGIPKKDVEKVFDRFYRVDK----------ARTRKLGGTGLGLAIAKEMVQAH 129
Query: 338 GGDLQIISMEGYGT 351
GGD+ S+EG GT
Sbjct: 130 GGDIWADSIEGKGT 143
>pdb|2Q2E|B Chain B, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 621
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVA-DGLEDVTIKVSDEGGGI 287
F P L V E V N+L A EE + P I + V G + VT+ + D G GI
Sbjct: 31 FDSAPRSLITTVKEAVDNALDACEEA-----GILPDILVQVERTGPDYVTVIIEDNGPGI 85
Query: 288 PRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGG 339
R +PK+F L +R A K + G G+ + LYA+ G
Sbjct: 86 VREQIPKVFAKLLYGSR--------FHALKQSRGQQGIGISAAVLYAQMTAG 129
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 209 CLREYGSAPDFNIYGDPSFTFP---YV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPP 264
++E+ S+ + N+ + + P Y+ P+ + ++ L+ N ++ Y D
Sbjct: 108 AIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVK-----YSKKDAPDKY 162
Query: 265 IRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYG 324
+++I+ + V I V D G GIP +IF Y + E + G G
Sbjct: 163 VKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYE----------VPGTG 212
Query: 325 YGLPISRLYARYFGGDLQIISMEGYGTDAYLHL 357
GL I++ GG + + S G G+ ++ +
Sbjct: 213 LGLAITKEIVELHGGRIWVESEVGKGSRFFVWI 245
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 209 CLREYGSAPDFNIYGDPSFTFP---YV-PSHLHLMVFELVKNSLRAVEERYMDSDKVAPP 264
++E+ S+ + N+ + + P Y+ P+ + ++ L+ N ++ Y D
Sbjct: 108 AIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVK-----YSKKDAPDKY 162
Query: 265 IRIIVADGLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYG 324
+++I+ + V I V D G GIP +IF Y + E + G G
Sbjct: 163 VKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYE----------VPGTG 212
Query: 325 YGLPISRLYARYFGGDLQIISMEGYGTDAYLHL 357
GL I++ GG + + S G G+ ++ +
Sbjct: 213 LGLAITKEIVELHGGRIWVESEVGKGSRFFVWI 245
>pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
Length = 469
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI---IVADGLEDVTIKVSDEGG 285
FP L+ V EL++NSL A D + P I+I ++ D + + V D G
Sbjct: 24 FPNPARALYQTVRELIENSLDAT-----DVHGILPNIKITIDLIDDARQIYKVNVVDNGI 78
Query: 286 GIPRSGLPKIF-TYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
GIP +P F LYS+ ++ T YG G+ + LY++
Sbjct: 79 GIPPQEVPNAFGRVLYSSK----------YVNRQTRGXYGLGVKAAVLYSQ 119
>pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
Length = 472
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI---IVADGLEDVTIKVSDEGG 285
FP L+ V EL++NSL A D + P I+I ++ D + + V D G
Sbjct: 27 FPNPARALYQTVRELIENSLDAT-----DVHGILPNIKITIDLIDDARQIYKVNVVDNGI 81
Query: 286 GIPRSGLPKIF-TYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
GIP +P F LYS+ ++ T YG G+ + LY++
Sbjct: 82 GIPPQEVPNAFGRVLYSSK----------YVNRQTRGXYGLGVKAAVLYSQ 122
>pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 530
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI---IVADGLEDVTIKVSDEGG 285
FP L+ V EL++NSL A D + P I+I ++ D + + V D G
Sbjct: 25 FPNPARALYQTVRELIENSLDAT-----DVHGILPNIKITIDLIDDARQIYKVNVVDNGI 79
Query: 286 GIPRSGLPKIF-TYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
GIP +P F LYS+ ++ T YG G+ + LY++
Sbjct: 80 GIPPQEVPNAFGRVLYSSK----------YVNRQTRGMYGLGVKAAVLYSQ 120
>pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
Length = 469
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI---IVADGLEDVTIKVSDEGG 285
FP L+ V EL++NSL A D + P I+I ++ D + + V D G
Sbjct: 24 FPNPARALYQTVRELIENSLDAT-----DVHGILPNIKITIDLIDDARQIYKVNVVDNGI 78
Query: 286 GIPRSGLPKIF-TYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
GIP +P F LYS+ ++ T YG G+ + LY++
Sbjct: 79 GIPPQEVPNAFGRVLYSSK----------YVNRQTRGMYGLGVKAAVLYSQ 119
>pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
Length = 471
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 229 FPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRI---IVADGLEDVTIKVSDEGG 285
FP L+ V EL++NSL A D + P I+I ++ D + + V D G
Sbjct: 26 FPNPARALYQTVRELIENSLDAT-----DVHGILPNIKITIDLIDDARQIYKVNVVDNGI 80
Query: 286 GIPRSGLPKIF-TYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYAR 335
GIP +P F LYS+ ++ T YG G+ + LY++
Sbjct: 81 GIPPQEVPNAFGRVLYSSK----------YVNRQTRGMYGLGVKAAVLYSQ 121
>pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
Complexed With Inhibitor
pdb|3G75|B Chain B, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
Complexed With Inhibitor
pdb|3G7B|A Chain A, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
pdb|3G7B|B Chain B, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
Length = 184
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIP-----RS 290
LH +V+E+V NS+ Y A I +++ +D IKV+D G GIP +
Sbjct: 21 LHHLVWEIVDNSIDEALAGY------ANQIEVVIE---KDNWIKVTDNGRGIPVDIQEKM 71
Query: 291 GLPKIFTYLYSTARNPLDENTDLAADKGTM---AGYGYGLP 328
G P + L S+ N L ++ ++ + Y G+P
Sbjct: 72 GRPAVEVILTSSVVNALSQDLEVYVHRNETIYHQAYKKGVP 112
>pdb|3TTZ|A Chain A, Crystal Structure Of A Topoisomerase Atpase Inhibitor
pdb|3TTZ|B Chain B, Crystal Structure Of A Topoisomerase Atpase Inhibitor
pdb|3U2D|A Chain A, S. Aureus Gyrb Atpase Domain In Complex With Small
Molecule Inhibitor
pdb|3U2D|B Chain B, S. Aureus Gyrb Atpase Domain In Complex With Small
Molecule Inhibitor
pdb|3U2K|A Chain A, S. Aureus Gyrb Atpase Domain In Complex With A Small
Molecule Inhibitor
pdb|3U2K|B Chain B, S. Aureus Gyrb Atpase Domain In Complex With A Small
Molecule Inhibitor
Length = 198
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 236 LHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIP-----RS 290
LH +V+E+V NS+ Y A I +++ +D IKV+D G GIP +
Sbjct: 32 LHHLVWEIVDNSIDEALAGY------ANQIEVVIE---KDNWIKVTDNGRGIPVDIQEKM 82
Query: 291 GLPKIFTYLYSTARNPLDENTDL 313
G P + L S+ N L ++ ++
Sbjct: 83 GRPAVEVILTSSVVNALSQDLEV 105
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 212 EYGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVAD 271
+YG+ D I DP+ + FE + V+ +++ KV P R I D
Sbjct: 26 KYGTVTDLKIMKDPA---TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD 82
Query: 272 GLEDVTIKVSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGY 325
+D T K+ GGI PK F +S +D L D G G+G+
Sbjct: 83 -EQDKTGKIF--VGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGF 133
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 147 DLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
DL + + + Y G+ + G++++LH PN PP+
Sbjct: 39 DLGQDKEVDGKLYREAAGLCPVWGKYIQLHQPNRPPY 75
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
Length = 432
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
+Y DL + + Y G+ + G+H+EL P+ PP+
Sbjct: 37 IYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPY 76
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
+Y DL + + Y G+ + G+H+EL P+ PP+
Sbjct: 37 IYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPY 76
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 144 VYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPH 183
+Y DL + + Y G+ + G+H+EL P+ PP+
Sbjct: 32 IYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPY 71
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex
With Lipoyl-Amp
pdb|3A7U|A Chain A, Crystal Structure Of The Bovine Lipoyltransferase In Its
Unliganded Form
Length = 347
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 213 YGSAPDFNIYGDPSFTFPYVPSHLHLMVFELVKN 246
YG P F++ D SFT + SH+ + VF VKN
Sbjct: 247 YGKTPKFSV--DTSFTVLHEQSHVEIKVFIDVKN 278
>pdb|2WW8|A Chain A, Structure Of The Pilus Adhesin (Rrga) From Streptococcus
Pneumoniae
Length = 893
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 84 VRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKI 143
VRD+ + RD+R +P+I + S E+ I+ IKV N+ P+ K+ D
Sbjct: 710 VRDFPIPKIRDVRKYPEI-TISKEKKLGD-IEFIKVNKNDKKPLRGAVFSLQKQHPDYPD 767
Query: 144 VYEDLDE 150
+Y +D+
Sbjct: 768 IYGAIDQ 774
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 72 PYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNV------V 125
PYG V++ + + +F D+ +FP S S+E ++K+++ +
Sbjct: 79 PYG---ALPVMEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLEPSFGGINLEDIGA 135
Query: 126 PMMALGLQQLKKEMDPKIVYED 147
P LQ+L +EM+ + ++D
Sbjct: 136 PKCFRILQRLSEEMNIPVFHDD 157
>pdb|2YGA|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 226 SFTFPYVPSHLHLMVFELVKNSLRAVEE-RYMD-SD----KVAPPIRIIVADGLEDVTIK 279
S V S+ + + EL+ N+ A+++ RY SD + P + I + E ++
Sbjct: 17 SLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLE 76
Query: 280 VSDEGGGIPRSGLPKIFTYLYSTARNPLDENTDLAADKGTMAGYGYGLPISRLYARYFGG 339
+ D G G+ ++GL + + + E AD + +G G Y+ +
Sbjct: 77 IRDSGIGMTKAGLINLLGTIAKSGTKAFMEALSAGADVSMIGQFGVG-----FYSLFLVA 131
Query: 340 D-LQIIS 345
D +Q+IS
Sbjct: 132 DRVQVIS 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,385,281
Number of Sequences: 62578
Number of extensions: 497746
Number of successful extensions: 1016
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 32
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)