BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017631
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 509 bits (1311), Expect = e-145, Method: Compositional matrix adjust.
Identities = 239/325 (73%), Positives = 284/325 (87%)
Query: 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
ME+LI LVN+IQRACT LGD+G SALPTLW++LP LESIVG+DFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 64 PRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQ 123
PRGSGIVTRRPLVLQL K + G +EYAEFLHLP+KKFTDF+ VRKEIQ+ETDR TG+SK
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 124 ISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAI 183
IS VPIHLSIYSPNVVNLTLIDLPG+TKVAV+GQ +S+V +IE MVRSYIEKPNC+ILAI
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 184 TPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243
+PANQDLATSDA+K+SREVDP+G+RTFGVLTK+DLMDKGT+A++ILEGRS+ L++PWVG+
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240
Query: 244 VNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIP 303
VNRSQADINKNVDMIAAR+RE E+F+ + +Y HLA KMGSE+LAK+LSKHLE +IKSRIP
Sbjct: 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIP 300
Query: 304 GITSLINRSIDELESELDHLGRPVA 328
GI SLIN+++ ELE+EL LG+P+A
Sbjct: 301 GIQSLINKTVLELETELSRLGKPIA 325
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 230/352 (65%), Gaps = 11/352 (3%)
Query: 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
ME LI LVNR+Q A + +G D LP + LE+ VGRDFL
Sbjct: 26 MEDLIPLVNRLQDAFSAIGQ-NADLDLPQI-------AVVGGQSAGKSSVLENFVGRDFL 77
Query: 64 PRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQ 123
PRGSGIVTRRPLVLQL + EYAEFLH KKFTDF VR EI+ ETDRVTG +K
Sbjct: 78 PRGSGIVTRRPLVLQLVNSTT---EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 134
Query: 124 ISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAI 183
ISPVPI+L +YSP+V+NLTL+DLPG+TKV V QP + +I M+ ++ K NCLILA+
Sbjct: 135 ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 194
Query: 184 TPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243
+PAN DLA SDA+K+++EVDP G+RT GV+TKLDLMD+GT+A D+LE + PL+ ++G+
Sbjct: 195 SPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 254
Query: 244 VNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIP 303
VNRSQ DI+ D+ AA E +FF + P Y HLA +MG+ YL K+L++ L + I+ +P
Sbjct: 255 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 314
Query: 304 GITSLINRSIDELESELDHLGRPVAVDAGAQLYTILELCRSFDRIFKEHLDG 355
G+ + + + +E E+D D + +L++ + F F++ ++G
Sbjct: 315 GLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEG 366
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 319 bits (818), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 229/352 (65%), Gaps = 11/352 (3%)
Query: 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
ME LI LVNR+Q A + +G D LP + LE+ VGRDFL
Sbjct: 3 MEDLIPLVNRLQDAFSAIGQ-NADLDLPQI-------AVVGGQSAGKSSVLENFVGRDFL 54
Query: 64 PRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQ 123
PRGSGIVTRRPLVLQL EYAEFLH KKFTDF VR EI+ ETDRVTG +K
Sbjct: 55 PRGSGIVTRRPLVLQLVN---ATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 111
Query: 124 ISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAI 183
ISPVPI+L +YSP+V+NLTL+DLPG+TKV V QP + +I M+ ++ K NCLILA+
Sbjct: 112 ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 171
Query: 184 TPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243
+PAN DLA SDA+K+++EVDP G+RT GV+TKLDLMD+GT+A D+LE + PL+ ++G+
Sbjct: 172 SPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 231
Query: 244 VNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIP 303
VNRSQ DI+ D+ AA E +FF + P Y HLA +MG+ YL K+L++ L + I+ +P
Sbjct: 232 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 291
Query: 304 GITSLINRSIDELESELDHLGRPVAVDAGAQLYTILELCRSFDRIFKEHLDG 355
G+ + + + +E E++ D + +L++ + F F++ ++G
Sbjct: 292 GLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEG 343
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 313 bits (802), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 162/319 (50%), Positives = 216/319 (67%), Gaps = 11/319 (3%)
Query: 3 TMESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDF 62
+ME LI LVNR+Q A + +G D LP + LE+ VGRDF
Sbjct: 5 SMEDLIPLVNRLQDAFSAIGQ-NADLDLPQIA-------VVGGQSAGKSSVLENFVGRDF 56
Query: 63 LPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSK 122
LPRGSGIVTRRPLVLQL EYAEFLH KKFTDF VR EI+ ETDRVTG +K
Sbjct: 57 LPRGSGIVTRRPLVLQLVN---ATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK 113
Query: 123 QISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILA 182
ISPVPI+L +YSP+V+NLTL+DLPG+TKV V QP + +I M+ ++ K NCLILA
Sbjct: 114 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILA 173
Query: 183 ITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVG 242
++PAN DLA SDA+K+++EVDP G+RT GV+TKLDLMD+GT+A D+LE + PL+ ++G
Sbjct: 174 VSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 233
Query: 243 IVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRI 302
+VNRSQ DI+ D+ AA E +FF + P Y HLA +MG+ YL K+L++ L + I+ +
Sbjct: 234 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTL 293
Query: 303 PGITSLINRSIDELESELD 321
PG+ + + + +E E++
Sbjct: 294 PGLRNKLQSQLLSIEKEVE 312
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 310 bits (795), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 160/302 (52%), Positives = 208/302 (68%), Gaps = 11/302 (3%)
Query: 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
ME LI LVNR+Q A + +G D LP + LE+ VGRDFL
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQ-NADLDLPQIA-------VVGGQSAGKSSVLENFVGRDFL 52
Query: 64 PRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQ 123
PRGSGIVTRRPLVLQL + EYAEFLH KKFTDF VR EI+ ETDRVTG +K
Sbjct: 53 PRGSGIVTRRPLVLQLVNST---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKG 109
Query: 124 ISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAI 183
ISPVPI+L +YSP+V+NLTL+DLPG+TKV V QP + +I M+ ++ K NCLILA+
Sbjct: 110 ISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAV 169
Query: 184 TPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243
+PAN DLA SDA+K+++EVDP G+RT GV+TKLDLMD+GT+A D+LE + PL+ ++G+
Sbjct: 170 SPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229
Query: 244 VNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIP 303
VNRSQ DI+ D+ AA E +FF + P Y HLA +MG+ YL K+L++ L + I+ +P
Sbjct: 230 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP 289
Query: 304 GI 305
G+
Sbjct: 290 GL 291
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/302 (53%), Positives = 205/302 (67%), Gaps = 11/302 (3%)
Query: 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
ME LI LVNR+Q A + LG L E LP LE+ VGRDFL
Sbjct: 19 MEELIPLVNRLQDAFSALGQ-------SCLLE-LPQIAVVGGQSAGKSSVLENFVGRDFL 70
Query: 64 PRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQ 123
PRGSGIVTRRPLVLQL ++ EYAEFLH KKFTDF VR EI+ ETDRVTG +K
Sbjct: 71 PRGSGIVTRRPLVLQLITSKA---EYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKG 127
Query: 124 ISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAI 183
IS +PI+L +YSP+V+NLTLIDLPGITKV V QP + +I M+ +I + NCLILA+
Sbjct: 128 ISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAV 187
Query: 184 TPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243
TPAN DLA SDA+KL++EVDP G RT GV+TKLDLMD+GT+A D+LE + PL+ +VG+
Sbjct: 188 TPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGV 247
Query: 244 VNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIP 303
VNRSQ DI+ D+ AA E +FF + P Y H+A +MG+ +L K+L++ L + I+ +P
Sbjct: 248 VNRSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLP 307
Query: 304 GI 305
Sbjct: 308 NF 309
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 158/319 (49%), Positives = 211/319 (66%), Gaps = 11/319 (3%)
Query: 3 TMESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDF 62
+ E LI LVNR+Q A + +G D LP + LE+ VGRDF
Sbjct: 5 SXEDLIPLVNRLQDAFSAIGQ-NADLDLPQIA-------VVGGQSAGKSSVLENFVGRDF 56
Query: 63 LPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSK 122
LPRGSGIVTRRPLVLQL EYAEFLH KKFTDF VR EI+ ETDRVTG +K
Sbjct: 57 LPRGSGIVTRRPLVLQLVN---ATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK 113
Query: 123 QISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILA 182
ISPVPI+L +YSP+V+NLTL+DLPG TKV V QP + +I + ++ K NCLILA
Sbjct: 114 GISPVPINLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILA 173
Query: 183 ITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVG 242
++PAN DLA SDA+K+++EVDP G+RT GV+TKLDL D+GT+A D+LE + PL+ ++G
Sbjct: 174 VSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIG 233
Query: 243 IVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRI 302
+VNRSQ DI+ D+ AA E +FF + P Y HLA + G+ YL K+L++ L + I+ +
Sbjct: 234 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTL 293
Query: 303 PGITSLINRSIDELESELD 321
PG+ + + + +E E++
Sbjct: 294 PGLRNKLQSQLLSIEKEVE 312
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/321 (46%), Positives = 206/321 (64%), Gaps = 14/321 (4%)
Query: 5 ESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPXXXXXXXXXXXXXXXLESIVGRDFLP 64
+ LI ++N++Q LG D LP LE+IVGRDFLP
Sbjct: 1 DQLIPVINKLQDVFNTLGSDPLD---------LPQIVVVGSQSSGKSSVLENIVGRDFLP 51
Query: 65 RGSGIVTRRPLVLQLHK---TEPG--LQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTG 119
RGSGIVTRRPL+LQL + G QE+ EFLH P F DFS +R+EI +TDR+TG
Sbjct: 52 RGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTG 111
Query: 120 KSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCL 179
K+K IS PI+L IYSP+VVNLTL+DLPGITKV V QP + +I MV +YI+K N +
Sbjct: 112 KNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAI 171
Query: 180 ILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHP 239
I+A+TPAN DLA SDA++L++EVDP G+RT GV+TKLDLMDKGT+A+++L GR PL
Sbjct: 172 IVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231
Query: 240 WVGIVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIK 299
++G++NRSQ DI + + + E +F P Y +A + G+ YL+K L+K L I+
Sbjct: 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIR 291
Query: 300 SRIPGITSLINRSIDELESEL 320
+P + +++ + +++ EL
Sbjct: 292 DTLPDLKVKVSKMLSDVQGEL 312
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 173/321 (53%), Gaps = 14/321 (4%)
Query: 36 ALPXXXXXXXXXXXXXXXLESIVGRDFLPRGSGIVTRRPLVLQLHK-----TEPGLQEYA 90
ALP LE++ G LPRGSGIVTR PLVL+L K G Y
Sbjct: 44 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 102
Query: 91 EFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGIT 150
++ + + +D S V KEI + + + G+ IS I L I S +V +LTLIDLPGIT
Sbjct: 103 DY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGIT 158
Query: 151 KVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTF 210
+VAV QP + +I+T+++ YI++ + L + P+N D+AT++A+ +++EVDP G+RT
Sbjct: 159 RVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218
Query: 211 GVLTKLDLMDKGT--NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRREHEFF 268
G+LTK DL+DKGT +D++ + L+ ++ + R Q +I + + A +RE FF
Sbjct: 219 GILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFF 278
Query: 269 ATSPDYGHL--ATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESELDHLGRP 326
P + L K LA+ L+ L + I +P + + I + + EL G
Sbjct: 279 ENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVD 338
Query: 327 VAVDAGAQLYTILELCRSFDR 347
+ D +++ +++ +F++
Sbjct: 339 IPEDENEKMFFLIDKVNAFNQ 359
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 173/321 (53%), Gaps = 14/321 (4%)
Query: 36 ALPXXXXXXXXXXXXXXXLESIVGRDFLPRGSGIVTRRPLVLQLHK-----TEPGLQEYA 90
ALP LE++ G LPRGSGIVTR PLVL+L K G Y
Sbjct: 69 ALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 127
Query: 91 EFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGIT 150
++ + + +D S V KEI + + + G+ IS I L I S +V +LTLIDLPGIT
Sbjct: 128 DY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGIT 183
Query: 151 KVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTF 210
+VAV QP + +I+T+++ YI++ + L + P+N D+AT++A+ +++EVDP G+RT
Sbjct: 184 RVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 243
Query: 211 GVLTKLDLMDKGT--NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRREHEFF 268
G+LTK DL+DKGT +D++ + L+ ++ + R Q +I + + A +RE FF
Sbjct: 244 GILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFF 303
Query: 269 ATSPDYGHL--ATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESELDHLGRP 326
P + L K LA+ L+ L + I +P + + I + + EL G
Sbjct: 304 ENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVD 363
Query: 327 VAVDAGAQLYTILELCRSFDR 347
+ D +++ +++ +F++
Sbjct: 364 IPEDENEKMFFLIDKVNAFNQ 384
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 297 IIKSRIPGITSLINRSIDELESELDHLGRPVAVDAGAQLYT 337
++ SR P SL+ ++ EL+ ELD +G+ VAV G L T
Sbjct: 64 LVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKT 104
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 166 ETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER------TFGVLTKLDL 218
E ++ Y+EK +I AI P + A KL+RE TGE +GVLT+ L
Sbjct: 395 EERMKEYVEKSIGIITAINP---HVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQL 450
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,153,875
Number of Sequences: 62578
Number of extensions: 397890
Number of successful extensions: 880
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 13
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)