Query 017631
Match_columns 368
No_of_seqs 225 out of 2850
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:19:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 1.4E-47 3.1E-52 379.1 22.6 347 1-355 1-350 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 3.5E-42 7.6E-47 302.9 26.2 238 4-252 1-238 (240)
3 KOG0447 Dynamin-like GTP bindi 100.0 2.4E-30 5.3E-35 240.7 25.7 283 34-322 305-600 (980)
4 COG1159 Era GTPase [General fu 99.9 1.8E-25 3.9E-30 197.2 11.8 213 37-315 6-221 (298)
5 PF00350 Dynamin_N: Dynamin fa 99.9 4.4E-24 9.6E-29 180.7 16.8 167 40-216 1-168 (168)
6 TIGR00436 era GTP-binding prot 99.9 3E-21 6.4E-26 175.8 12.5 209 39-314 2-212 (270)
7 PRK00089 era GTPase Era; Revie 99.8 6.3E-20 1.4E-24 169.2 14.4 211 37-311 5-216 (292)
8 PRK15494 era GTPase Era; Provi 99.8 4.1E-19 9E-24 166.2 14.7 211 38-315 53-265 (339)
9 PF01031 Dynamin_M: Dynamin ce 99.8 3E-18 6.5E-23 157.9 13.4 134 226-359 2-135 (295)
10 PRK09866 hypothetical protein; 99.8 3.9E-16 8.3E-21 151.4 26.9 42 38-79 70-111 (741)
11 PF02421 FeoB_N: Ferrous iron 99.8 7.4E-19 1.6E-23 144.5 6.8 143 39-251 2-149 (156)
12 COG1160 Predicted GTPases [Gen 99.8 1.2E-17 2.6E-22 155.8 14.0 155 38-259 4-161 (444)
13 COG0486 ThdF Predicted GTPase 99.7 1.8E-16 3.8E-21 148.4 20.6 158 35-259 215-372 (454)
14 TIGR03156 GTP_HflX GTP-binding 99.7 8.8E-17 1.9E-21 150.8 16.5 128 35-221 187-316 (351)
15 KOG1423 Ras-like GTPase ERA [C 99.7 2.1E-17 4.6E-22 145.4 10.6 210 37-307 72-312 (379)
16 PRK11058 GTPase HflX; Provisio 99.7 1.3E-16 2.8E-21 153.0 16.8 128 35-221 195-324 (426)
17 PRK12298 obgE GTPase CgtA; Rev 99.7 2E-16 4.3E-21 150.1 15.4 182 36-279 158-349 (390)
18 COG1084 Predicted GTPase [Gene 99.7 1.1E-16 2.3E-21 143.0 12.5 158 5-222 135-296 (346)
19 COG0370 FeoB Fe2+ transport sy 99.7 1.8E-16 3.9E-21 154.4 13.5 153 38-257 4-158 (653)
20 COG2262 HflX GTPases [General 99.7 6.7E-16 1.4E-20 142.0 15.9 185 10-258 165-351 (411)
21 COG1160 Predicted GTPases [Gen 99.7 1.5E-16 3.2E-21 148.6 11.8 156 36-250 177-335 (444)
22 PRK12299 obgE GTPase CgtA; Rev 99.7 4.6E-16 9.9E-21 144.8 13.4 164 35-259 156-324 (335)
23 COG0218 Predicted GTPase [Gene 99.7 1.2E-15 2.7E-20 128.1 12.8 128 36-223 23-152 (200)
24 PRK05291 trmE tRNA modificatio 99.7 5.8E-15 1.2E-19 143.3 19.2 154 36-262 214-369 (449)
25 cd01878 HflX HflX subfamily. 99.6 2.6E-15 5.6E-20 131.1 14.0 129 35-222 39-169 (204)
26 cd04163 Era Era subfamily. Er 99.6 2.5E-15 5.3E-20 125.9 13.1 123 37-221 3-126 (168)
27 PF01926 MMR_HSR1: 50S ribosom 99.6 5.2E-15 1.1E-19 117.1 12.6 115 39-215 1-116 (116)
28 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 4.5E-15 9.6E-20 128.8 12.7 124 39-222 2-132 (196)
29 PRK09554 feoB ferrous iron tra 99.6 1.1E-14 2.4E-19 148.8 17.0 158 38-258 4-163 (772)
30 cd01898 Obg Obg subfamily. Th 99.6 6.9E-15 1.5E-19 124.3 13.1 125 39-223 2-131 (170)
31 TIGR00450 mnmE_trmE_thdF tRNA 99.6 6.2E-14 1.3E-18 135.4 20.5 159 35-262 201-359 (442)
32 KOG0448 Mitofusin 1 GTPase, in 99.6 6.2E-14 1.3E-18 135.5 20.1 169 36-230 108-285 (749)
33 cd01897 NOG NOG1 is a nucleola 99.6 1.6E-14 3.4E-19 121.9 13.6 25 38-62 1-25 (168)
34 PRK00093 GTP-binding protein D 99.6 1.8E-14 3.9E-19 140.3 15.9 127 36-221 172-299 (435)
35 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.2E-14 2.6E-19 122.5 12.8 117 38-221 1-117 (168)
36 cd01895 EngA2 EngA2 subfamily. 99.6 2.8E-14 6.2E-19 120.5 14.2 127 37-221 2-128 (174)
37 PRK12296 obgE GTPase CgtA; Rev 99.6 9.6E-15 2.1E-19 141.1 12.5 181 21-263 143-340 (500)
38 PRK12297 obgE GTPase CgtA; Rev 99.6 2.5E-14 5.5E-19 136.5 15.1 164 36-263 157-327 (424)
39 TIGR02729 Obg_CgtA Obg family 99.6 1.6E-14 3.4E-19 134.4 12.7 127 35-221 155-288 (329)
40 TIGR03594 GTPase_EngA ribosome 99.6 3.7E-14 8.1E-19 137.9 15.4 125 36-219 171-296 (429)
41 PRK03003 GTP-binding protein D 99.6 3.9E-14 8.5E-19 138.8 15.3 158 36-260 37-196 (472)
42 PRK00454 engB GTP-binding prot 99.6 3.2E-14 7E-19 123.2 13.0 124 36-222 23-151 (196)
43 TIGR03598 GTPase_YsxC ribosome 99.6 3.8E-14 8.2E-19 121.1 12.8 123 36-221 17-144 (179)
44 cd01894 EngA1 EngA1 subfamily. 99.6 2E-14 4.3E-19 119.5 10.5 77 139-222 45-121 (157)
45 PRK03003 GTP-binding protein D 99.6 4.3E-14 9.2E-19 138.6 14.1 126 36-221 210-337 (472)
46 cd01868 Rab11_like Rab11-like. 99.6 5.2E-14 1.1E-18 118.4 12.7 146 37-254 3-156 (165)
47 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.4E-13 3E-18 114.3 15.0 121 38-222 2-123 (157)
48 TIGR03594 GTPase_EngA ribosome 99.6 6.5E-14 1.4E-18 136.2 14.8 123 39-223 1-124 (429)
49 cd01866 Rab2 Rab2 subfamily. 99.5 7.8E-14 1.7E-18 117.8 12.4 152 37-255 4-158 (168)
50 cd01865 Rab3 Rab3 subfamily. 99.5 9.1E-14 2E-18 117.0 12.8 104 139-256 50-156 (165)
51 PRK00093 GTP-binding protein D 99.5 1.1E-13 2.4E-18 134.8 15.1 153 37-256 1-155 (435)
52 cd01861 Rab6 Rab6 subfamily. 99.5 7.3E-14 1.6E-18 116.9 11.6 116 39-221 2-120 (161)
53 PRK04213 GTP-binding protein; 99.5 1.4E-13 3E-18 119.9 13.6 125 36-222 8-146 (201)
54 cd04112 Rab26 Rab26 subfamily. 99.5 1.5E-13 3.3E-18 118.7 13.6 110 139-266 50-166 (191)
55 cd04171 SelB SelB subfamily. 99.5 1.4E-13 3E-18 115.4 12.3 68 138-221 50-119 (164)
56 cd01853 Toc34_like Toc34-like 99.5 3.2E-13 7E-18 120.7 15.2 127 36-222 30-165 (249)
57 cd01881 Obg_like The Obg-like 99.5 8.2E-14 1.8E-18 118.2 10.8 80 138-223 43-137 (176)
58 cd04104 p47_IIGP_like p47 (47- 99.5 1.5E-13 3.3E-18 119.2 12.5 73 137-221 50-122 (197)
59 cd01867 Rab8_Rab10_Rab13_like 99.5 2.1E-13 4.7E-18 115.0 13.1 152 37-255 3-157 (167)
60 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.8E-13 3.8E-18 114.9 12.4 69 139-221 50-122 (164)
61 cd04122 Rab14 Rab14 subfamily. 99.5 2.4E-13 5.1E-18 114.6 13.2 146 38-254 3-155 (166)
62 cd04142 RRP22 RRP22 subfamily. 99.5 2.7E-13 5.8E-18 117.7 13.8 158 39-255 2-166 (198)
63 smart00173 RAS Ras subfamily o 99.5 1.7E-13 3.8E-18 115.0 12.2 145 39-255 2-154 (164)
64 cd00880 Era_like Era (E. coli 99.5 2.9E-13 6.3E-18 112.1 13.5 78 138-223 44-121 (163)
65 cd04113 Rab4 Rab4 subfamily. 99.5 1.8E-13 3.9E-18 114.6 12.2 148 39-253 2-152 (161)
66 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 2.3E-13 5.1E-18 114.6 12.9 103 139-255 51-156 (166)
67 cd04119 RJL RJL (RabJ-Like) su 99.5 2.5E-13 5.4E-18 114.2 13.1 148 39-256 2-160 (168)
68 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.3E-13 7.2E-18 122.3 14.1 125 36-222 37-169 (313)
69 smart00175 RAB Rab subfamily o 99.5 2.2E-13 4.7E-18 114.2 12.0 68 140-221 50-120 (164)
70 cd01879 FeoB Ferrous iron tran 99.5 1.5E-13 3.4E-18 114.4 10.9 72 139-221 43-116 (158)
71 PRK09518 bifunctional cytidyla 99.5 2.6E-13 5.7E-18 139.1 14.9 126 36-221 449-576 (712)
72 PF04548 AIG1: AIG1 family; I 99.5 1.5E-13 3.4E-18 120.4 11.2 126 39-223 2-133 (212)
73 PRK09518 bifunctional cytidyla 99.5 3E-13 6.5E-18 138.7 14.7 125 36-221 274-398 (712)
74 cd01864 Rab19 Rab19 subfamily. 99.5 3.2E-13 6.9E-18 113.7 12.4 70 139-221 52-123 (165)
75 cd04139 RalA_RalB RalA/RalB su 99.5 3.2E-13 6.8E-18 113.2 12.1 150 39-255 2-154 (164)
76 cd04136 Rap_like Rap-like subf 99.5 2.6E-13 5.6E-18 113.7 11.3 69 139-221 49-121 (163)
77 cd04138 H_N_K_Ras_like H-Ras/N 99.5 3.8E-13 8.2E-18 112.4 12.2 69 140-221 50-121 (162)
78 cd00154 Rab Rab family. Rab G 99.5 2.6E-13 5.7E-18 112.6 11.1 115 38-219 1-118 (159)
79 cd01860 Rab5_related Rab5-rela 99.5 5E-13 1.1E-17 112.0 12.7 116 39-220 3-120 (163)
80 cd04175 Rap1 Rap1 subgroup. T 99.5 3.4E-13 7.5E-18 113.3 11.7 69 139-221 49-121 (164)
81 COG3596 Predicted GTPase [Gene 99.5 1.4E-13 2.9E-18 120.5 9.2 122 37-222 38-164 (296)
82 cd01862 Rab7 Rab7 subfamily. 99.5 5E-13 1.1E-17 113.0 12.4 68 139-220 49-123 (172)
83 cd04157 Arl6 Arl6 subfamily. 99.5 7.8E-13 1.7E-17 110.7 13.3 70 138-221 44-119 (162)
84 KOG1191 Mitochondrial GTPase [ 99.5 3.6E-12 7.8E-17 119.5 18.6 143 17-222 252-405 (531)
85 PF05049 IIGP: Interferon-indu 99.5 2.1E-13 4.6E-18 126.8 10.5 133 6-218 16-153 (376)
86 cd04101 RabL4 RabL4 (Rab-like4 99.5 8.9E-13 1.9E-17 110.7 13.1 69 139-221 52-122 (164)
87 cd00881 GTP_translation_factor 99.5 7E-13 1.5E-17 113.8 12.8 69 138-221 61-129 (189)
88 cd04114 Rab30 Rab30 subfamily. 99.5 8E-13 1.7E-17 111.5 12.7 119 36-221 6-127 (169)
89 KOG1954 Endocytosis/signaling 99.5 2.8E-11 6.1E-16 109.4 23.0 169 36-223 57-228 (532)
90 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 1.5E-12 3.2E-17 111.7 14.2 116 38-220 4-123 (183)
91 cd04127 Rab27A Rab27a subfamil 99.5 8.2E-13 1.8E-17 112.8 12.6 101 139-257 63-171 (180)
92 cd04106 Rab23_lke Rab23-like s 99.5 7.2E-13 1.6E-17 110.9 12.0 69 139-221 51-121 (162)
93 cd04124 RabL2 RabL2 subfamily. 99.5 7.5E-13 1.6E-17 111.0 11.9 68 139-220 49-118 (161)
94 PF10662 PduV-EutP: Ethanolami 99.5 4.5E-13 9.7E-18 107.8 10.0 25 38-62 2-26 (143)
95 cd01890 LepA LepA subfamily. 99.5 9.6E-13 2.1E-17 112.2 12.7 68 138-220 66-133 (179)
96 cd04123 Rab21 Rab21 subfamily. 99.5 1.1E-12 2.3E-17 109.7 12.7 68 140-221 50-120 (162)
97 cd04144 Ras2 Ras2 subfamily. 99.5 7.5E-13 1.6E-17 114.2 12.1 108 140-261 48-161 (190)
98 PRK15467 ethanolamine utilizat 99.5 6.8E-13 1.5E-17 110.9 11.4 103 143-260 41-144 (158)
99 cd04140 ARHI_like ARHI subfami 99.5 6.5E-13 1.4E-17 111.8 11.2 102 139-254 49-156 (165)
100 PLN03118 Rab family protein; P 99.5 9.7E-13 2.1E-17 115.5 12.7 112 139-264 62-178 (211)
101 cd04120 Rab12 Rab12 subfamily. 99.4 1.5E-12 3.2E-17 113.2 13.1 69 139-220 49-119 (202)
102 cd04159 Arl10_like Arl10-like 99.4 2.1E-12 4.6E-17 107.1 13.5 69 139-221 44-116 (159)
103 cd04156 ARLTS1 ARLTS1 subfamil 99.4 2E-12 4.4E-17 108.0 13.1 111 39-220 1-115 (160)
104 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 1.7E-12 3.7E-17 110.2 12.7 148 39-257 4-158 (172)
105 cd04109 Rab28 Rab28 subfamily. 99.4 9.5E-13 2.1E-17 115.9 11.4 103 139-259 50-162 (215)
106 cd04111 Rab39 Rab39 subfamily. 99.4 1.9E-12 4.1E-17 113.6 13.2 160 38-263 3-166 (211)
107 cd04154 Arl2 Arl2 subfamily. 99.4 1.5E-12 3.3E-17 110.4 12.3 114 36-221 13-130 (173)
108 cd04125 RabA_like RabA-like su 99.4 2.4E-12 5.2E-17 110.8 13.7 105 139-261 49-160 (188)
109 PTZ00369 Ras-like protein; Pro 99.4 1.5E-12 3.3E-17 112.2 12.2 117 37-220 5-124 (189)
110 cd04151 Arl1 Arl1 subfamily. 99.4 1.6E-12 3.5E-17 108.5 11.9 70 139-221 43-115 (158)
111 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 2.2E-12 4.8E-17 112.3 12.9 104 139-260 50-165 (201)
112 TIGR02528 EutP ethanolamine ut 99.4 1.7E-12 3.6E-17 106.4 11.4 24 39-62 2-25 (142)
113 cd01863 Rab18 Rab18 subfamily. 99.4 3.3E-12 7.1E-17 106.9 13.4 69 139-221 49-121 (161)
114 cd04176 Rap2 Rap2 subgroup. T 99.4 1.1E-12 2.4E-17 110.1 10.3 68 140-220 50-120 (163)
115 cd04158 ARD1 ARD1 subfamily. 99.4 1.8E-12 4E-17 109.6 11.8 70 138-221 42-115 (169)
116 cd01893 Miro1 Miro1 subfamily. 99.4 2E-12 4.3E-17 109.0 12.0 114 39-222 2-119 (166)
117 cd04137 RheB Rheb (Ras Homolog 99.4 2.1E-12 4.6E-17 110.2 12.3 153 39-259 3-159 (180)
118 PLN03110 Rab GTPase; Provision 99.4 2.7E-12 5.8E-17 113.0 13.2 157 37-259 12-170 (216)
119 cd00876 Ras Ras family. The R 99.4 1.6E-12 3.5E-17 108.3 11.2 114 39-221 1-119 (160)
120 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 2.5E-12 5.4E-17 108.9 12.2 155 39-259 2-161 (170)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 2.2E-12 4.8E-17 109.6 11.9 112 37-220 15-130 (174)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.4 5.5E-12 1.2E-16 106.1 14.1 70 138-221 49-122 (167)
123 cd01876 YihA_EngB The YihA (En 99.4 3.2E-12 7E-17 107.2 12.7 78 140-222 46-126 (170)
124 PF00009 GTP_EFTU: Elongation 99.4 3.9E-13 8.4E-18 115.8 7.0 128 36-219 2-135 (188)
125 smart00178 SAR Sar1p-like memb 99.4 3.8E-12 8.3E-17 109.2 13.1 112 37-220 17-132 (184)
126 cd04149 Arf6 Arf6 subfamily. 99.4 4E-12 8.8E-17 107.4 12.8 68 139-220 53-124 (168)
127 cd04110 Rab35 Rab35 subfamily. 99.4 4.4E-12 9.5E-17 110.3 13.3 160 36-262 5-166 (199)
128 cd04177 RSR1 RSR1 subgroup. R 99.4 2.9E-12 6.3E-17 108.2 11.7 70 139-221 49-121 (168)
129 cd04166 CysN_ATPS CysN_ATPS su 99.4 2.7E-12 5.9E-17 112.3 11.9 84 122-221 61-145 (208)
130 cd00878 Arf_Arl Arf (ADP-ribos 99.4 4E-12 8.7E-17 106.0 12.3 71 139-222 43-116 (158)
131 PLN03108 Rab family protein; P 99.4 5.4E-12 1.2E-16 110.6 13.5 149 37-256 6-161 (210)
132 cd04115 Rab33B_Rab33A Rab33B/R 99.4 2.4E-12 5.2E-17 109.0 10.7 144 38-247 3-150 (170)
133 cd01850 CDC_Septin CDC/Septin. 99.4 4.6E-12 1E-16 115.3 13.2 133 38-221 5-158 (276)
134 cd01886 EF-G Elongation factor 99.4 5.1E-12 1.1E-16 114.6 12.9 110 122-249 48-158 (270)
135 cd04117 Rab15 Rab15 subfamily. 99.4 6.1E-12 1.3E-16 105.5 12.5 96 139-252 49-151 (161)
136 cd01896 DRG The developmentall 99.4 4.9E-12 1.1E-16 112.4 12.5 24 39-62 2-25 (233)
137 cd04116 Rab9 Rab9 subfamily. 99.4 7.6E-12 1.6E-16 105.7 13.0 119 36-220 4-128 (170)
138 cd04161 Arl2l1_Arl13_like Arl2 99.4 8.1E-12 1.8E-16 105.4 13.0 69 139-221 43-115 (167)
139 cd04146 RERG_RasL11_like RERG/ 99.4 2E-12 4.4E-17 108.7 9.2 69 140-221 48-121 (165)
140 cd00879 Sar1 Sar1 subfamily. 99.4 9.8E-12 2.1E-16 107.1 13.6 113 36-220 18-134 (190)
141 cd01891 TypA_BipA TypA (tyrosi 99.4 1.7E-11 3.7E-16 106.1 15.2 70 137-221 63-132 (194)
142 KOG1489 Predicted GTP-binding 99.4 2.3E-12 5E-17 114.5 9.6 151 35-251 194-355 (366)
143 cd00157 Rho Rho (Ras homology) 99.4 2.4E-12 5.2E-17 108.7 9.1 69 140-222 49-120 (171)
144 cd04147 Ras_dva Ras-dva subfam 99.4 7.9E-12 1.7E-16 108.5 12.2 69 139-221 47-119 (198)
145 cd04150 Arf1_5_like Arf1-Arf5- 99.4 8.6E-12 1.9E-16 104.4 12.0 70 138-221 43-116 (159)
146 TIGR00487 IF-2 translation ini 99.4 9.2E-12 2E-16 124.0 14.1 156 34-258 84-245 (587)
147 cd04118 Rab24 Rab24 subfamily. 99.4 8.3E-12 1.8E-16 107.9 12.0 107 140-260 51-163 (193)
148 cd04132 Rho4_like Rho4-like su 99.4 1E-11 2.3E-16 106.6 12.4 115 39-221 2-120 (187)
149 smart00174 RHO Rho (Ras homolo 99.4 3.2E-12 7E-17 108.4 9.0 69 139-221 46-117 (174)
150 PTZ00133 ADP-ribosylation fact 99.3 1.7E-11 3.7E-16 105.0 13.4 68 139-220 61-132 (182)
151 CHL00189 infB translation init 99.3 1E-11 2.2E-16 125.6 13.5 160 33-259 240-406 (742)
152 smart00177 ARF ARF-like small 99.3 1.4E-11 3.1E-16 104.8 12.5 68 139-220 57-128 (175)
153 cd04148 RGK RGK subfamily. Th 99.3 2.2E-11 4.8E-16 107.5 14.1 108 139-262 50-162 (221)
154 cd00877 Ran Ran (Ras-related n 99.3 1.1E-11 2.3E-16 104.6 11.3 102 139-259 49-155 (166)
155 cd01884 EF_Tu EF-Tu subfamily. 99.3 6.7E-12 1.4E-16 108.4 10.1 129 38-221 3-133 (195)
156 cd04121 Rab40 Rab40 subfamily. 99.3 1.7E-11 3.7E-16 105.5 12.4 103 139-260 55-164 (189)
157 PRK09602 translation-associate 99.3 5.6E-11 1.2E-15 113.1 16.7 39 38-76 2-40 (396)
158 cd01889 SelB_euk SelB subfamil 99.3 9.4E-12 2E-16 107.5 10.5 69 138-221 67-135 (192)
159 cd04165 GTPBP1_like GTPBP1-lik 99.3 8.9E-12 1.9E-16 110.0 10.4 74 133-221 78-153 (224)
160 PLN00223 ADP-ribosylation fact 99.3 4E-11 8.7E-16 102.6 14.2 69 139-221 61-133 (181)
161 TIGR00231 small_GTP small GTP- 99.3 2.6E-11 5.6E-16 100.2 12.7 30 38-68 2-31 (161)
162 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 4.2E-11 9.2E-16 100.7 14.0 112 39-221 1-114 (164)
163 cd04155 Arl3 Arl3 subfamily. 99.3 3.2E-11 6.8E-16 102.2 13.4 115 36-221 13-130 (173)
164 cd01874 Cdc42 Cdc42 subfamily. 99.3 8.5E-12 1.8E-16 106.2 9.7 116 38-221 2-120 (175)
165 TIGR00475 selB selenocysteine- 99.3 2.3E-11 5E-16 121.6 14.3 108 139-261 50-164 (581)
166 cd01892 Miro2 Miro2 subfamily. 99.3 2.1E-11 4.6E-16 103.1 11.7 120 36-221 3-123 (169)
167 TIGR00491 aIF-2 translation in 99.3 4.4E-11 9.6E-16 119.0 15.7 133 36-220 3-135 (590)
168 cd01888 eIF2_gamma eIF2-gamma 99.3 3.4E-11 7.5E-16 104.9 13.2 69 139-221 83-152 (203)
169 cd00882 Ras_like_GTPase Ras-li 99.3 1.2E-11 2.6E-16 101.2 9.8 72 138-223 44-119 (157)
170 cd04126 Rab20 Rab20 subfamily. 99.3 1.7E-11 3.7E-16 107.8 11.1 69 139-220 44-114 (220)
171 cd04143 Rhes_like Rhes_like su 99.3 3.9E-11 8.5E-16 107.5 13.6 104 139-259 48-167 (247)
172 cd01899 Ygr210 Ygr210 subfamil 99.3 3.3E-11 7.1E-16 111.4 13.5 110 40-186 1-110 (318)
173 cd04128 Spg1 Spg1p. Spg1p (se 99.3 3.2E-11 6.9E-16 103.3 12.4 67 139-220 49-118 (182)
174 TIGR00993 3a0901s04IAP86 chlor 99.3 2.8E-11 6.1E-16 118.4 13.2 125 38-221 119-251 (763)
175 cd04168 TetM_like Tet(M)-like 99.3 1.7E-11 3.8E-16 109.1 10.7 69 137-220 62-130 (237)
176 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 7.5E-12 1.6E-16 103.6 7.5 122 36-223 21-145 (221)
177 PRK05306 infB translation init 99.3 2.8E-11 6E-16 123.5 13.1 156 34-259 287-448 (787)
178 TIGR00437 feoB ferrous iron tr 99.3 1.8E-11 3.9E-16 122.5 11.1 110 139-260 41-152 (591)
179 cd01870 RhoA_like RhoA-like su 99.3 3.9E-11 8.4E-16 101.8 11.7 25 38-62 2-26 (175)
180 PLN03071 GTP-binding nuclear p 99.3 3.8E-11 8.2E-16 105.9 11.5 104 139-259 62-168 (219)
181 COG1163 DRG Predicted GTPase [ 99.3 9.8E-11 2.1E-15 104.7 13.5 88 37-185 63-150 (365)
182 cd01871 Rac1_like Rac1-like su 99.3 1.1E-10 2.4E-15 99.2 13.0 68 139-220 49-119 (174)
183 KOG0410 Predicted GTP binding 99.3 2.9E-11 6.2E-16 107.8 9.5 145 17-221 159-309 (410)
184 cd04134 Rho3 Rho3 subfamily. 99.3 3E-11 6.5E-16 104.1 9.5 69 139-221 48-119 (189)
185 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 9.1E-11 2E-15 103.9 12.7 116 37-220 13-131 (232)
186 cd04130 Wrch_1 Wrch-1 subfamil 99.2 4.4E-11 9.6E-16 101.5 10.2 69 139-221 48-119 (173)
187 cd04135 Tc10 TC10 subfamily. 99.2 8.7E-11 1.9E-15 99.6 12.0 68 140-221 49-119 (174)
188 cd04169 RF3 RF3 subfamily. Pe 99.2 3E-11 6.6E-16 109.4 9.6 136 38-221 3-138 (267)
189 cd04105 SR_beta Signal recogni 99.2 8.7E-11 1.9E-15 102.3 12.2 70 139-221 48-124 (203)
190 cd04170 EF-G_bact Elongation f 99.2 5.4E-11 1.2E-15 108.3 11.3 70 137-221 62-131 (268)
191 cd04133 Rop_like Rop subfamily 99.2 4.7E-11 1E-15 101.5 10.1 115 39-221 3-120 (176)
192 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.2 6.3E-11 1.4E-15 101.3 10.9 115 38-220 6-123 (182)
193 COG0536 Obg Predicted GTPase [ 99.2 3.4E-11 7.5E-16 108.4 9.3 167 36-264 158-334 (369)
194 cd01885 EF2 EF2 (for archaea a 99.2 8.5E-11 1.8E-15 103.3 11.5 67 138-219 72-138 (222)
195 cd04131 Rnd Rnd subfamily. Th 99.2 8.5E-11 1.8E-15 100.2 11.2 114 39-220 3-119 (178)
196 PRK10512 selenocysteinyl-tRNA- 99.2 9.1E-11 2E-15 117.8 13.2 109 136-260 48-163 (614)
197 cd01875 RhoG RhoG subfamily. 99.2 2.2E-10 4.9E-15 98.8 13.4 116 38-221 4-122 (191)
198 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 2.6E-10 5.6E-15 100.4 13.2 114 39-221 3-120 (222)
199 cd04167 Snu114p Snu114p subfam 99.2 1.4E-10 3E-15 101.9 11.3 67 138-219 70-136 (213)
200 KOG1490 GTP-binding protein CR 99.2 2.5E-11 5.4E-16 113.8 6.8 161 3-223 133-298 (620)
201 KOG0084 GTPase Rab1/YPT1, smal 99.2 1.6E-10 3.4E-15 96.2 10.4 120 36-221 8-129 (205)
202 TIGR01393 lepA GTP-binding pro 99.2 1.9E-10 4.1E-15 115.2 13.2 132 37-220 3-136 (595)
203 PRK12317 elongation factor 1-a 99.2 3.9E-10 8.4E-15 109.4 14.7 83 122-220 68-153 (425)
204 CHL00071 tufA elongation facto 99.2 1.1E-10 2.3E-15 112.5 10.3 132 36-221 11-143 (409)
205 PF00071 Ras: Ras family; Int 99.2 1.3E-10 2.9E-15 97.2 9.4 144 39-252 1-150 (162)
206 KOG0092 GTPase Rab5/YPT51 and 99.2 6.3E-11 1.4E-15 98.1 6.9 154 38-262 6-166 (200)
207 KOG0078 GTP-binding protein SE 99.2 4.6E-10 9.9E-15 94.7 12.0 153 35-253 10-164 (207)
208 PRK05433 GTP-binding protein L 99.1 3.8E-10 8.1E-15 113.2 12.8 169 36-259 6-180 (600)
209 TIGR02836 spore_IV_A stage IV 99.1 3.6E-10 7.7E-15 105.1 11.5 145 38-221 18-195 (492)
210 smart00176 RAN Ran (Ras-relate 99.1 5.3E-10 1.2E-14 97.0 11.9 107 139-262 44-153 (200)
211 PRK09435 membrane ATPase/prote 99.1 1.1E-09 2.5E-14 101.3 14.3 23 37-59 56-78 (332)
212 TIGR00484 EF-G translation elo 99.1 2.3E-10 5E-15 117.2 10.5 134 36-221 9-142 (689)
213 cd01900 YchF YchF subfamily. 99.1 3.5E-10 7.6E-15 102.1 9.6 37 40-76 1-37 (274)
214 PRK12739 elongation factor G; 99.1 4.3E-10 9.4E-15 115.2 11.3 134 36-221 7-140 (691)
215 KOG0095 GTPase Rab30, small G 99.1 3.3E-10 7.1E-15 89.6 7.9 121 36-222 6-128 (213)
216 cd01883 EF1_alpha Eukaryotic e 99.1 7.1E-10 1.5E-14 97.8 11.1 84 122-220 61-151 (219)
217 PRK00007 elongation factor G; 99.1 2.3E-10 4.9E-15 117.2 9.0 134 36-221 9-142 (693)
218 PRK04004 translation initiatio 99.1 6.8E-10 1.5E-14 111.0 12.0 66 139-219 71-136 (586)
219 PRK05124 cysN sulfate adenylyl 99.1 1.6E-09 3.6E-14 105.9 14.5 147 35-221 25-175 (474)
220 PTZ00258 GTP-binding protein; 99.1 7.6E-10 1.6E-14 104.4 11.6 104 35-185 19-125 (390)
221 TIGR02034 CysN sulfate adenyly 99.1 8.5E-10 1.8E-14 106.1 12.1 83 122-221 64-148 (406)
222 cd04102 RabL3 RabL3 (Rab-like3 99.1 1.7E-09 3.7E-14 93.8 12.8 70 139-221 54-144 (202)
223 COG4917 EutP Ethanolamine util 99.1 2.2E-10 4.9E-15 88.1 6.0 104 38-221 2-105 (148)
224 PRK12735 elongation factor Tu; 99.1 8.6E-10 1.9E-14 105.8 11.2 70 137-221 73-143 (396)
225 PF00735 Septin: Septin; Inte 99.1 6E-10 1.3E-14 101.4 9.3 134 39-223 6-159 (281)
226 PRK12736 elongation factor Tu; 99.1 7.3E-10 1.6E-14 106.2 10.4 132 36-221 11-143 (394)
227 cd04129 Rho2 Rho2 subfamily. 99.1 8E-10 1.7E-14 95.0 9.7 24 39-62 3-26 (187)
228 cd04103 Centaurin_gamma Centau 99.1 1E-09 2.2E-14 91.7 9.9 24 39-62 2-25 (158)
229 PF00025 Arf: ADP-ribosylation 99.1 6.3E-10 1.4E-14 94.6 8.7 114 36-221 13-130 (175)
230 PLN03127 Elongation factor Tu; 99.1 9.3E-10 2E-14 106.6 10.9 132 36-221 60-192 (447)
231 COG1100 GTPase SAR1 and relate 99.1 1.8E-09 3.8E-14 95.1 11.8 119 38-223 6-128 (219)
232 PRK09601 GTP-binding protein Y 99.1 1.3E-09 2.9E-14 101.6 11.2 38 38-75 3-40 (364)
233 TIGR03680 eif2g_arch translati 99.1 1.8E-09 3.9E-14 104.0 12.5 67 139-221 80-149 (406)
234 cd01882 BMS1 Bms1. Bms1 is an 99.0 1.3E-09 2.7E-14 96.5 10.1 69 136-222 80-149 (225)
235 PF08477 Miro: Miro-like prote 99.0 2.7E-10 5.9E-15 90.2 5.3 24 39-62 1-24 (119)
236 PRK00741 prfC peptide chain re 99.0 2.3E-09 4.9E-14 105.9 12.8 138 36-221 9-146 (526)
237 TIGR01394 TypA_BipA GTP-bindin 99.0 1.3E-09 2.9E-14 108.9 11.3 69 137-220 62-130 (594)
238 PF09439 SRPRB: Signal recogni 99.0 7.1E-10 1.5E-14 93.4 7.8 117 37-221 3-127 (181)
239 PRK05506 bifunctional sulfate 99.0 1.5E-09 3.2E-14 110.4 11.6 69 136-220 101-171 (632)
240 PRK00049 elongation factor Tu; 99.0 1.1E-09 2.3E-14 105.1 10.0 131 37-221 12-143 (396)
241 TIGR00485 EF-Tu translation el 99.0 1E-09 2.2E-14 105.4 9.6 131 37-221 12-143 (394)
242 cd01873 RhoBTB RhoBTB subfamil 99.0 1.7E-09 3.7E-14 93.5 9.7 66 139-220 66-134 (195)
243 PRK10218 GTP-binding protein; 99.0 2.8E-09 6.1E-14 106.5 12.4 130 36-220 4-134 (607)
244 PLN03126 Elongation factor Tu; 99.0 3.1E-09 6.7E-14 103.6 12.0 132 36-221 80-212 (478)
245 KOG0093 GTPase Rab3, small G p 99.0 1.7E-09 3.7E-14 85.4 8.2 118 38-221 22-141 (193)
246 PTZ00132 GTP-binding nuclear p 99.0 2E-08 4.4E-13 88.3 15.9 101 139-258 58-163 (215)
247 COG2229 Predicted GTPase [Gene 99.0 1.8E-08 3.9E-13 83.3 14.0 130 36-230 9-147 (187)
248 TIGR00503 prfC peptide chain r 99.0 4E-09 8.6E-14 104.2 11.6 137 36-220 10-146 (527)
249 KOG0073 GTP-binding ADP-ribosy 99.0 1.1E-08 2.3E-13 82.7 11.8 155 38-264 17-179 (185)
250 TIGR00750 lao LAO/AO transport 99.0 3.8E-08 8.2E-13 91.0 17.0 25 36-60 33-57 (300)
251 TIGR00490 aEF-2 translation el 99.0 5.3E-09 1.1E-13 107.6 12.2 70 136-220 83-152 (720)
252 TIGR00483 EF-1_alpha translati 99.0 1.4E-08 3.1E-13 98.6 14.6 83 122-220 69-155 (426)
253 PLN00023 GTP-binding protein; 98.9 6.1E-09 1.3E-13 95.3 10.2 69 139-221 83-166 (334)
254 PRK13351 elongation factor G; 98.9 6.4E-09 1.4E-13 106.9 11.5 70 137-221 71-140 (687)
255 COG0532 InfB Translation initi 98.9 1.6E-08 3.5E-13 96.7 12.8 117 36-221 4-122 (509)
256 KOG0098 GTPase Rab2, small G p 98.9 1.3E-08 2.8E-13 84.0 10.0 121 36-222 5-127 (216)
257 KOG1145 Mitochondrial translat 98.9 2.3E-08 5.1E-13 95.2 13.1 143 36-249 152-299 (683)
258 PRK04000 translation initiatio 98.9 1.6E-08 3.4E-13 97.4 12.3 24 37-60 9-32 (411)
259 PTZ00327 eukaryotic translatio 98.9 2.2E-08 4.8E-13 97.0 13.3 24 38-61 35-58 (460)
260 COG5019 CDC3 Septin family pro 98.9 1.7E-08 3.6E-13 92.3 11.6 83 139-223 82-179 (373)
261 PLN00116 translation elongatio 98.9 8E-09 1.7E-13 107.9 10.9 67 138-219 97-163 (843)
262 PTZ00416 elongation factor 2; 98.9 9.9E-09 2.1E-13 107.0 11.4 66 139-219 92-157 (836)
263 PRK07560 elongation factor EF- 98.9 9.8E-09 2.1E-13 105.9 11.1 133 36-219 19-152 (731)
264 cd01858 NGP_1 NGP-1. Autoanti 98.9 5.8E-09 1.2E-13 87.0 7.8 31 38-68 103-133 (157)
265 KOG2486 Predicted GTPase [Gene 98.9 1.1E-08 2.3E-13 89.9 9.5 160 36-254 135-307 (320)
266 KOG0075 GTP-binding ADP-ribosy 98.9 4E-08 8.7E-13 77.8 11.7 73 136-221 62-137 (186)
267 KOG0394 Ras-related GTPase [Ge 98.9 3.3E-09 7.2E-14 87.2 5.1 121 35-221 7-133 (210)
268 KOG0091 GTPase Rab39, small G 98.8 9.7E-09 2.1E-13 82.7 7.3 158 38-260 9-170 (213)
269 PF03308 ArgK: ArgK protein; 98.8 3.7E-09 8.1E-14 92.8 5.0 60 138-219 121-180 (266)
270 KOG0080 GTPase Rab18, small G 98.8 5.4E-09 1.2E-13 83.9 5.4 118 36-220 10-131 (209)
271 COG1419 FlhF Flagellar GTP-bin 98.8 8.1E-09 1.8E-13 96.2 6.5 178 37-251 203-381 (407)
272 KOG2655 Septin family protein 98.8 4.2E-08 9.1E-13 90.4 10.8 82 140-223 80-175 (366)
273 COG0480 FusA Translation elong 98.8 1.7E-08 3.7E-13 101.8 8.7 135 36-221 9-143 (697)
274 cd04178 Nucleostemin_like Nucl 98.8 1.3E-08 2.8E-13 86.0 6.6 32 37-68 117-148 (172)
275 PLN00043 elongation factor 1-a 98.8 1.1E-07 2.4E-12 92.3 13.2 72 135-219 81-158 (447)
276 cd01849 YlqF_related_GTPase Yl 98.8 1.4E-08 3E-13 84.5 5.9 39 36-74 99-138 (155)
277 PTZ00141 elongation factor 1- 98.7 6.1E-08 1.3E-12 94.2 11.1 70 136-219 82-158 (446)
278 COG1703 ArgK Putative periplas 98.7 3.8E-07 8.2E-12 81.4 14.8 24 36-59 50-73 (323)
279 PRK12740 elongation factor G; 98.7 3.4E-08 7.3E-13 101.4 9.5 70 137-221 58-127 (668)
280 COG0012 Predicted GTPase, prob 98.7 4.8E-08 1E-12 90.0 9.4 106 38-186 3-108 (372)
281 PRK11889 flhF flagellar biosyn 98.7 4.2E-08 9.1E-13 91.7 9.2 158 38-230 242-401 (436)
282 TIGR03348 VI_IcmF type VI secr 98.7 7.1E-08 1.5E-12 104.2 11.8 164 5-222 81-259 (1169)
283 PRK14722 flhF flagellar biosyn 98.7 2.9E-08 6.3E-13 93.2 6.6 23 38-60 138-160 (374)
284 PRK14721 flhF flagellar biosyn 98.7 8.1E-08 1.7E-12 91.6 9.2 156 38-230 192-350 (420)
285 cd01855 YqeH YqeH. YqeH is an 98.7 5.2E-08 1.1E-12 84.0 7.2 25 38-62 128-152 (190)
286 PRK12726 flagellar biosynthesi 98.7 1.5E-07 3.1E-12 87.9 10.5 154 37-230 206-366 (407)
287 PRK14723 flhF flagellar biosyn 98.7 6.2E-08 1.3E-12 98.1 8.5 159 39-230 187-347 (767)
288 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.5E-08 1.2E-12 79.6 6.9 26 38-63 84-109 (141)
289 KOG0090 Signal recognition par 98.7 1.4E-07 3.1E-12 79.7 9.1 113 38-221 39-160 (238)
290 PF00448 SRP54: SRP54-type pro 98.6 4.6E-08 1E-12 84.4 5.9 81 139-230 84-164 (196)
291 cd01851 GBP Guanylate-binding 98.6 4E-07 8.7E-12 80.4 11.8 37 36-72 6-45 (224)
292 TIGR01425 SRP54_euk signal rec 98.6 5E-07 1.1E-11 86.3 13.1 80 138-228 182-261 (429)
293 KOG1491 Predicted GTP-binding 98.6 5.7E-08 1.2E-12 87.6 5.6 101 38-185 21-124 (391)
294 cd03112 CobW_like The function 98.6 2.5E-07 5.3E-12 77.2 9.0 23 38-60 1-23 (158)
295 PRK13768 GTPase; Provisional 98.6 3.7E-07 7.9E-12 82.2 10.7 21 39-59 4-24 (253)
296 KOG0087 GTPase Rab11/YPT3, sma 98.6 3.4E-07 7.5E-12 77.3 9.4 119 36-220 13-133 (222)
297 TIGR00157 ribosome small subun 98.6 3.1E-07 6.8E-12 82.2 9.8 28 38-65 121-148 (245)
298 COG5256 TEF1 Translation elong 98.6 9.2E-07 2E-11 82.3 12.9 83 122-220 69-159 (428)
299 KOG0079 GTP-binding protein H- 98.6 1.1E-07 2.3E-12 75.4 5.8 69 139-221 57-127 (198)
300 cd01856 YlqF YlqF. Proteins o 98.6 3.3E-07 7.2E-12 77.5 9.1 30 36-65 114-143 (171)
301 PF03193 DUF258: Protein of un 98.6 1.4E-07 3.1E-12 77.9 6.6 28 38-65 36-63 (161)
302 PRK12289 GTPase RsgA; Reviewed 98.6 1.6E-07 3.4E-12 88.1 7.4 28 39-66 174-201 (352)
303 KOG0462 Elongation factor-type 98.6 3.6E-07 7.8E-12 87.3 9.8 131 37-221 60-192 (650)
304 KOG0395 Ras-related GTPase [Ge 98.6 5.1E-07 1.1E-11 77.9 10.1 117 37-221 3-123 (196)
305 KOG1547 Septin CDC10 and relat 98.5 5E-07 1.1E-11 77.8 9.4 81 140-222 105-200 (336)
306 TIGR00092 GTP-binding protein 98.5 3.7E-07 8E-12 85.4 9.4 101 38-185 3-107 (368)
307 PRK12288 GTPase RsgA; Reviewed 98.5 3E-07 6.5E-12 86.2 8.7 28 39-66 207-234 (347)
308 KOG3883 Ras family small GTPas 98.5 1.3E-06 2.9E-11 69.8 10.7 121 37-223 9-135 (198)
309 PRK12723 flagellar biosynthesi 98.5 2.6E-07 5.7E-12 87.5 7.9 155 38-230 175-336 (388)
310 KOG1532 GTPase XAB1, interacts 98.5 1.1E-06 2.4E-11 77.1 10.9 78 139-222 116-197 (366)
311 COG1161 Predicted GTPases [Gen 98.5 2.1E-07 4.4E-12 86.7 6.7 25 38-62 133-157 (322)
312 PRK09563 rbgA GTPase YlqF; Rev 98.5 2.5E-07 5.4E-12 85.0 7.0 32 36-67 120-151 (287)
313 TIGR03596 GTPase_YlqF ribosome 98.5 2.8E-07 6.1E-12 84.1 7.1 32 36-67 117-148 (276)
314 KOG0070 GTP-binding ADP-ribosy 98.5 4.7E-07 1E-11 75.0 7.2 107 138-258 60-173 (181)
315 KOG1707 Predicted Ras related/ 98.5 6.1E-07 1.3E-11 86.4 8.9 118 37-223 9-132 (625)
316 PRK12727 flagellar biosynthesi 98.5 4.5E-07 9.8E-12 88.0 7.9 80 139-230 429-508 (559)
317 PRK05703 flhF flagellar biosyn 98.5 1E-06 2.2E-11 84.9 10.3 82 139-230 300-381 (424)
318 PRK06731 flhF flagellar biosyn 98.4 1.1E-06 2.5E-11 79.3 9.5 81 139-230 155-235 (270)
319 cd03114 ArgK-like The function 98.4 1.8E-06 4E-11 71.0 9.8 58 138-217 91-148 (148)
320 COG1217 TypA Predicted membran 98.4 5.8E-07 1.2E-11 84.3 6.8 71 136-221 65-135 (603)
321 PRK10416 signal recognition pa 98.4 3.6E-06 7.7E-11 78.1 12.1 84 138-230 196-283 (318)
322 KOG1486 GTP-binding protein DR 98.4 5E-07 1.1E-11 78.3 5.8 25 37-61 62-86 (364)
323 KOG0081 GTPase Rab27, small G 98.4 3.4E-07 7.4E-12 73.5 4.4 111 139-262 67-180 (219)
324 PRK14974 cell division protein 98.4 1.5E-06 3.3E-11 80.9 9.3 81 139-230 223-303 (336)
325 COG4108 PrfC Peptide chain rel 98.4 2.3E-06 4.9E-11 79.9 10.0 135 37-221 12-148 (528)
326 COG0481 LepA Membrane GTPase L 98.4 1.5E-06 3.2E-11 81.9 8.6 132 36-221 8-143 (603)
327 PF03029 ATP_bind_1: Conserved 98.4 5.4E-07 1.2E-11 80.2 5.2 76 140-221 92-171 (238)
328 KOG0076 GTP-binding ADP-ribosy 98.3 1E-06 2.2E-11 72.0 6.2 112 138-262 68-186 (197)
329 cd01859 MJ1464 MJ1464. This f 98.3 2.8E-06 6E-11 70.7 8.9 28 37-64 101-128 (156)
330 KOG0468 U5 snRNP-specific prot 98.3 1.6E-06 3.5E-11 84.4 8.1 137 33-219 124-262 (971)
331 TIGR03597 GTPase_YqeH ribosome 98.3 9.7E-07 2.1E-11 83.6 6.5 24 38-61 155-178 (360)
332 KOG0458 Elongation factor 1 al 98.3 7.5E-06 1.6E-10 79.1 12.2 177 36-251 176-370 (603)
333 TIGR00064 ftsY signal recognit 98.3 2.3E-06 4.9E-11 77.8 8.4 84 138-230 154-241 (272)
334 PRK13796 GTPase YqeH; Provisio 98.3 8.3E-07 1.8E-11 84.2 5.7 24 38-61 161-184 (365)
335 COG1162 Predicted GTPases [Gen 98.3 2.6E-06 5.6E-11 76.9 8.3 23 39-61 166-188 (301)
336 PRK00098 GTPase RsgA; Reviewed 98.3 2.9E-06 6.3E-11 78.3 8.8 24 39-62 166-189 (298)
337 PRK12724 flagellar biosynthesi 98.3 2.2E-06 4.7E-11 81.3 8.0 84 138-230 299-383 (432)
338 KOG0086 GTPase Rab4, small G p 98.3 9.2E-06 2E-10 64.9 10.0 120 36-221 8-129 (214)
339 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 4.9E-06 1.1E-10 73.4 9.2 120 39-222 1-127 (232)
340 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.9E-06 1.1E-10 76.4 9.1 28 38-65 162-189 (287)
341 KOG0074 GTP-binding ADP-ribosy 98.2 5.4E-06 1.2E-10 65.4 7.4 114 38-221 18-134 (185)
342 PTZ00099 rab6; Provisional 98.2 4E-06 8.7E-11 71.2 7.4 115 138-266 28-145 (176)
343 PRK06995 flhF flagellar biosyn 98.2 1.3E-06 2.7E-11 84.9 4.3 81 139-230 335-415 (484)
344 PRK00771 signal recognition pa 98.2 1.4E-05 3E-10 77.1 10.8 80 140-230 177-256 (437)
345 KOG0097 GTPase Rab14, small G 98.2 1.8E-05 3.8E-10 62.4 9.3 120 36-221 10-131 (215)
346 KOG1144 Translation initiation 98.1 1.9E-05 4.2E-10 78.0 10.9 133 36-220 474-606 (1064)
347 PRK14845 translation initiatio 98.1 2.7E-05 5.9E-10 82.1 12.5 68 138-220 525-592 (1049)
348 COG3640 CooC CO dehydrogenase 98.1 3.8E-05 8.2E-10 66.5 11.1 86 139-248 134-221 (255)
349 KOG0088 GTPase Rab21, small G 98.1 6.8E-06 1.5E-10 66.1 6.0 118 38-221 14-133 (218)
350 KOG3859 Septins (P-loop GTPase 98.1 8.1E-06 1.8E-10 71.9 6.9 134 38-222 43-192 (406)
351 KOG0071 GTP-binding ADP-ribosy 98.1 4.2E-05 9E-10 60.5 10.0 89 139-241 61-154 (180)
352 TIGR00073 hypB hydrogenase acc 98.1 4.8E-05 1E-09 66.4 11.4 25 36-60 21-45 (207)
353 KOG4252 GTP-binding protein [S 98.1 5.7E-06 1.2E-10 67.9 4.8 68 140-221 70-139 (246)
354 PRK10867 signal recognition pa 98.0 2.5E-05 5.3E-10 75.3 9.6 81 138-229 183-263 (433)
355 COG0050 TufB GTPases - transla 98.0 3.2E-05 6.9E-10 68.8 9.3 131 37-222 12-144 (394)
356 KOG1424 Predicted GTP-binding 98.0 6.7E-06 1.4E-10 78.3 5.3 26 37-62 314-339 (562)
357 COG3523 IcmF Type VI protein s 98.0 0.00011 2.5E-09 77.9 14.7 163 6-221 94-271 (1188)
358 COG5257 GCD11 Translation init 98.0 2.6E-05 5.6E-10 70.3 8.3 24 38-61 11-34 (415)
359 COG3276 SelB Selenocysteine-sp 98.0 4.9E-05 1.1E-09 71.5 10.5 108 139-262 50-161 (447)
360 KOG1143 Predicted translation 98.0 2.9E-05 6.2E-10 71.2 8.5 144 39-222 169-319 (591)
361 cd03115 SRP The signal recogni 98.0 2.3E-05 5E-10 66.3 7.3 80 138-228 82-161 (173)
362 TIGR00101 ureG urease accessor 97.9 7.2E-05 1.6E-09 64.8 9.6 23 38-60 2-24 (199)
363 KOG0464 Elongation factor G [T 97.9 7E-05 1.5E-09 69.5 9.4 134 36-221 36-169 (753)
364 TIGR00959 ffh signal recogniti 97.9 3.8E-05 8.2E-10 74.0 7.7 82 138-230 182-263 (428)
365 KOG2484 GTPase [General functi 97.9 2.5E-05 5.4E-10 72.3 6.1 33 36-68 251-283 (435)
366 PRK10463 hydrogenase nickel in 97.9 9.4E-05 2E-09 67.1 9.7 25 36-60 103-127 (290)
367 KOG2485 Conserved ATP/GTP bind 97.9 1.9E-05 4.2E-10 70.9 4.9 26 36-61 142-167 (335)
368 KOG0077 Vesicle coat complex C 97.8 7.6E-05 1.6E-09 60.8 7.3 117 35-222 18-137 (193)
369 COG2895 CysN GTPases - Sulfate 97.8 0.00014 3E-09 66.5 9.6 151 35-224 4-157 (431)
370 COG5192 BMS1 GTP-binding prote 97.8 0.00011 2.3E-09 70.8 9.1 70 136-223 110-180 (1077)
371 KOG0465 Mitochondrial elongati 97.8 0.0001 2.3E-09 71.6 8.3 73 134-221 99-171 (721)
372 KOG0461 Selenocysteine-specifi 97.7 0.00045 9.9E-09 62.9 11.5 67 139-223 70-139 (522)
373 KOG1487 GTP-binding protein DR 97.7 8.4E-05 1.8E-09 65.1 6.3 25 37-61 59-83 (358)
374 KOG0072 GTP-binding ADP-ribosy 97.7 0.00033 7.2E-09 55.7 8.9 72 137-221 60-134 (182)
375 KOG0467 Translation elongation 97.7 9.7E-05 2.1E-09 73.5 6.9 129 36-219 8-137 (887)
376 COG1136 SalX ABC-type antimicr 97.6 0.00052 1.1E-08 60.0 10.4 57 162-219 147-205 (226)
377 PRK11537 putative GTP-binding 97.6 0.0005 1.1E-08 63.9 10.7 25 36-60 3-27 (318)
378 KOG0393 Ras-related small GTPa 97.6 8.9E-05 1.9E-09 63.1 4.9 117 38-221 5-124 (198)
379 KOG0083 GTPase Rab26/Rab37, sm 97.6 1.7E-05 3.7E-10 61.9 0.1 69 139-220 47-117 (192)
380 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00025 5.5E-09 60.3 6.8 22 38-59 1-22 (178)
381 COG0541 Ffh Signal recognition 97.5 0.003 6.5E-08 59.8 14.0 80 138-228 182-261 (451)
382 KOG2749 mRNA cleavage and poly 97.5 0.0023 5E-08 58.7 12.6 26 36-61 102-127 (415)
383 KOG2423 Nucleolar GTPase [Gene 97.5 0.00017 3.7E-09 66.7 5.4 27 36-62 306-332 (572)
384 KOG0463 GTP-binding protein GP 97.3 0.0007 1.5E-08 62.3 6.9 24 38-61 134-157 (641)
385 PRK01889 GTPase RsgA; Reviewed 97.3 0.00063 1.4E-08 64.4 6.6 24 39-62 197-220 (356)
386 COG1116 TauB ABC-type nitrate/ 97.3 0.0027 5.9E-08 55.9 10.0 24 38-61 30-53 (248)
387 COG5258 GTPBP1 GTPase [General 97.2 0.00048 1E-08 63.7 5.4 67 140-222 202-271 (527)
388 TIGR02475 CobW cobalamin biosy 97.1 0.005 1.1E-07 57.9 11.4 25 36-60 3-27 (341)
389 COG0552 FtsY Signal recognitio 97.1 0.0099 2.1E-07 54.6 12.3 82 139-229 222-307 (340)
390 TIGR02868 CydC thiol reductant 97.1 0.0021 4.7E-08 64.4 8.6 51 163-215 476-527 (529)
391 TIGR03499 FlhF flagellar biosy 97.0 0.00018 4E-09 65.8 0.4 23 38-60 195-217 (282)
392 cd01859 MJ1464 MJ1464. This f 97.0 0.0013 2.8E-08 54.5 5.5 55 165-221 2-56 (156)
393 COG4988 CydD ABC-type transpor 97.0 0.0051 1.1E-07 60.3 10.2 28 39-68 349-376 (559)
394 KOG1534 Putative transcription 97.0 0.0013 2.8E-08 56.1 5.1 21 40-60 6-26 (273)
395 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.012 2.6E-07 48.1 10.6 23 39-61 28-50 (144)
396 COG3840 ThiQ ABC-type thiamine 96.9 0.0008 1.7E-08 56.2 3.2 29 38-67 26-54 (231)
397 PF13555 AAA_29: P-loop contai 96.9 0.0011 2.3E-08 45.5 3.1 22 39-60 25-46 (62)
398 cd03222 ABC_RNaseL_inhibitor T 96.9 0.01 2.2E-07 50.3 9.8 24 38-61 26-49 (177)
399 KOG4181 Uncharacterized conser 96.8 0.015 3.3E-07 53.3 10.7 26 36-61 187-212 (491)
400 COG0523 Putative GTPases (G3E 96.8 0.006 1.3E-07 56.7 8.3 25 37-61 1-25 (323)
401 KOG1533 Predicted GTPase [Gene 96.8 0.0051 1.1E-07 53.4 7.1 20 40-59 5-24 (290)
402 COG1341 Predicted GTPase or GT 96.7 0.026 5.6E-07 53.2 12.2 25 36-60 72-96 (398)
403 COG1618 Predicted nucleotide k 96.7 0.021 4.5E-07 46.9 10.1 53 164-218 89-142 (179)
404 KOG0780 Signal recognition par 96.7 0.0067 1.5E-07 56.4 8.1 80 137-227 182-261 (483)
405 PRK11174 cysteine/glutathione 96.7 0.0077 1.7E-07 61.2 9.5 22 40-61 379-400 (588)
406 TIGR03796 NHPM_micro_ABC1 NHPM 96.7 0.008 1.7E-07 62.5 9.5 52 162-216 620-671 (710)
407 COG1135 AbcC ABC-type metal io 96.6 0.0067 1.5E-07 55.0 7.0 53 162-215 146-200 (339)
408 PF00005 ABC_tran: ABC transpo 96.6 0.0016 3.6E-08 52.5 2.8 24 38-61 12-35 (137)
409 COG1124 DppF ABC-type dipeptid 96.6 0.0093 2E-07 52.3 7.4 24 38-61 34-57 (252)
410 TIGR03797 NHPM_micro_ABC2 NHPM 96.5 0.011 2.5E-07 61.1 9.4 52 162-216 593-644 (686)
411 PRK13695 putative NTPase; Prov 96.5 0.011 2.4E-07 49.9 7.7 22 39-60 2-23 (174)
412 KOG0460 Mitochondrial translat 96.5 0.0099 2.2E-07 54.4 7.5 130 40-223 57-187 (449)
413 KOG2203 GTP-binding protein [G 96.5 0.0036 7.9E-08 60.5 5.0 27 36-62 36-62 (772)
414 cd00071 GMPK Guanosine monopho 96.5 0.0028 6.1E-08 51.4 3.6 21 40-60 2-22 (137)
415 TIGR02857 CydD thiol reductant 96.4 0.013 2.8E-07 58.8 8.8 23 39-61 350-372 (529)
416 TIGR00958 3a01208 Conjugate Tr 96.4 0.014 3E-07 60.7 9.1 22 40-61 510-531 (711)
417 PRK01889 GTPase RsgA; Reviewed 96.4 0.0046 1E-07 58.5 5.1 48 173-221 110-157 (356)
418 cd01855 YqeH YqeH. YqeH is an 96.4 0.016 3.4E-07 49.7 8.0 54 165-222 24-77 (190)
419 PF03205 MobB: Molybdopterin g 96.4 0.0024 5.2E-08 51.9 2.8 23 38-60 1-23 (140)
420 cd03280 ABC_MutS2 MutS2 homolo 96.4 0.051 1.1E-06 47.0 11.3 20 39-58 30-49 (200)
421 TIGR01193 bacteriocin_ABC ABC- 96.4 0.014 3E-07 60.8 8.9 23 39-61 502-524 (708)
422 COG0488 Uup ATPase components 96.4 0.045 9.6E-07 54.5 11.8 25 37-61 29-53 (530)
423 TIGR03375 type_I_sec_LssB type 96.3 0.016 3.6E-07 60.1 9.2 23 39-61 493-515 (694)
424 TIGR00157 ribosome small subun 96.3 0.0026 5.7E-08 57.0 2.8 56 166-221 27-82 (245)
425 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.044 9.5E-07 40.6 9.2 21 40-60 2-22 (99)
426 PF06858 NOG1: Nucleolar GTP-b 96.3 0.0088 1.9E-07 40.0 4.5 52 166-217 3-58 (58)
427 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0033 7.2E-08 53.6 3.2 26 36-61 2-30 (188)
428 PRK11160 cysteine/glutathione 96.3 0.018 4E-07 58.3 8.9 23 39-61 368-390 (574)
429 PLN03232 ABC transporter C fam 96.3 0.028 6E-07 63.2 11.0 23 39-61 645-667 (1495)
430 PLN03232 ABC transporter C fam 96.3 0.017 3.8E-07 64.8 9.3 23 39-61 1264-1286(1495)
431 PRK12289 GTPase RsgA; Reviewed 96.3 0.0047 1E-07 58.2 4.2 56 166-221 80-135 (352)
432 PRK13657 cyclic beta-1,2-gluca 96.2 0.02 4.3E-07 58.2 9.1 22 40-61 364-385 (588)
433 PF13521 AAA_28: AAA domain; P 96.2 0.0025 5.5E-08 53.2 2.1 22 39-60 1-22 (163)
434 cd01130 VirB11-like_ATPase Typ 96.2 0.0034 7.3E-08 53.7 2.9 23 38-60 26-48 (186)
435 cd01858 NGP_1 NGP-1. Autoanti 96.2 0.0075 1.6E-07 50.0 4.8 51 170-222 3-55 (157)
436 COG1132 MdlB ABC-type multidru 96.2 0.033 7.2E-07 56.4 10.3 24 38-61 356-379 (567)
437 TIGR02204 MsbA_rel ABC transpo 96.2 0.017 3.7E-07 58.5 8.3 22 40-61 369-390 (576)
438 TIGR01842 type_I_sec_PrtD type 96.2 0.03 6.5E-07 56.4 9.7 23 39-61 346-368 (544)
439 TIGR03263 guanyl_kin guanylate 96.1 0.0057 1.2E-07 51.9 3.8 22 39-60 3-24 (180)
440 COG0194 Gmk Guanylate kinase [ 96.1 0.0041 8.9E-08 52.3 2.8 36 39-74 6-41 (191)
441 cd02038 FleN-like FleN is a me 96.1 0.037 8E-07 44.9 8.4 66 139-221 45-112 (139)
442 cd02037 MRP-like MRP (Multiple 96.1 0.099 2.1E-06 43.8 11.3 66 138-219 67-134 (169)
443 cd02019 NK Nucleoside/nucleoti 96.1 0.0053 1.2E-07 43.2 2.9 21 40-60 2-22 (69)
444 PF13207 AAA_17: AAA domain; P 96.1 0.0044 9.5E-08 48.8 2.8 22 39-60 1-22 (121)
445 cd03110 Fer4_NifH_child This p 96.1 0.018 3.9E-07 48.8 6.7 67 137-220 91-157 (179)
446 COG1101 PhnK ABC-type uncharac 96.1 0.0046 9.9E-08 53.2 2.9 24 38-61 33-56 (263)
447 cd02036 MinD Bacterial cell di 96.1 0.053 1.2E-06 45.6 9.6 65 140-221 64-129 (179)
448 KOG4423 GTP-binding protein-li 96.1 0.00054 1.2E-08 57.0 -2.6 29 34-62 22-50 (229)
449 TIGR02203 MsbA_lipidA lipid A 96.1 0.027 5.8E-07 57.1 8.8 22 40-61 361-382 (571)
450 PF05879 RHD3: Root hair defec 96.0 0.0057 1.2E-07 63.3 3.9 22 43-65 1-22 (742)
451 TIGR01166 cbiO cobalt transpor 96.0 0.0053 1.2E-07 52.6 3.1 23 39-61 20-42 (190)
452 PLN03130 ABC transporter C fam 96.0 0.029 6.3E-07 63.4 9.6 22 39-60 1267-1288(1622)
453 TIGR00957 MRP_assoc_pro multi 96.0 0.037 8E-07 62.4 10.4 22 39-60 1314-1335(1522)
454 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0053 1.2E-07 53.6 3.1 23 39-61 29-51 (211)
455 COG3839 MalK ABC-type sugar tr 96.0 0.0054 1.2E-07 57.0 3.2 24 38-61 30-53 (338)
456 PRK11176 lipid transporter ATP 96.0 0.029 6.3E-07 56.9 8.8 22 40-61 372-393 (582)
457 COG4107 PhnK ABC-type phosphon 96.0 0.0061 1.3E-07 50.6 3.1 25 37-61 32-56 (258)
458 KOG0469 Elongation factor 2 [T 96.0 0.0085 1.8E-07 57.5 4.4 65 140-219 99-163 (842)
459 cd03261 ABC_Org_Solvent_Resist 96.0 0.006 1.3E-07 54.2 3.3 23 39-61 28-50 (235)
460 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0058 1.3E-07 53.6 3.1 23 39-61 32-54 (218)
461 TIGR00960 3a0501s02 Type II (G 95.9 0.0057 1.2E-07 53.6 3.0 24 38-61 30-53 (216)
462 PRK10790 putative multidrug tr 95.9 0.03 6.5E-07 57.0 8.6 22 40-61 370-391 (592)
463 cd03264 ABC_drug_resistance_li 95.9 0.0059 1.3E-07 53.3 3.0 23 39-61 27-49 (211)
464 cd03265 ABC_DrrA DrrA is the A 95.9 0.0062 1.3E-07 53.6 3.2 23 39-61 28-50 (220)
465 PRK10789 putative multidrug tr 95.9 0.033 7.1E-07 56.4 8.8 22 40-61 344-365 (569)
466 COG1127 Ttg2A ABC-type transpo 95.9 0.036 7.7E-07 48.7 7.5 74 140-215 128-204 (263)
467 TIGR01846 type_I_sec_HlyB type 95.9 0.04 8.6E-07 57.2 9.5 23 39-61 485-507 (694)
468 cd03238 ABC_UvrA The excision 95.9 0.0064 1.4E-07 51.5 3.0 21 39-59 23-43 (176)
469 TIGR02673 FtsE cell division A 95.9 0.0065 1.4E-07 53.1 3.2 23 39-61 30-52 (214)
470 PTZ00243 ABC transporter; Prov 95.9 0.036 7.9E-07 62.4 9.6 22 40-61 1339-1360(1560)
471 TIGR01192 chvA glucan exporter 95.9 0.037 8.1E-07 56.2 9.0 22 40-61 364-385 (585)
472 TIGR03608 L_ocin_972_ABC putat 95.9 0.007 1.5E-07 52.6 3.3 23 39-61 26-48 (206)
473 cd03269 ABC_putative_ATPase Th 95.9 0.0064 1.4E-07 53.0 3.0 23 39-61 28-50 (210)
474 PRK13541 cytochrome c biogenes 95.9 0.0071 1.5E-07 52.1 3.3 23 39-61 28-50 (195)
475 cd03216 ABC_Carb_Monos_I This 95.9 0.0075 1.6E-07 50.4 3.3 24 38-61 27-50 (163)
476 PRK13851 type IV secretion sys 95.9 0.0066 1.4E-07 57.0 3.2 23 38-60 163-185 (344)
477 cd03226 ABC_cobalt_CbiO_domain 95.9 0.0068 1.5E-07 52.7 3.2 24 38-61 27-50 (205)
478 PRK10078 ribose 1,5-bisphospho 95.9 0.0064 1.4E-07 52.0 3.0 23 39-61 4-26 (186)
479 cd03229 ABC_Class3 This class 95.9 0.0077 1.7E-07 51.1 3.3 23 39-61 28-50 (178)
480 cd03263 ABC_subfamily_A The AB 95.8 0.007 1.5E-07 53.2 3.1 23 39-61 30-52 (220)
481 PF13671 AAA_33: AAA domain; P 95.8 0.0061 1.3E-07 49.4 2.6 21 40-60 2-22 (143)
482 TIGR02322 phosphon_PhnN phosph 95.8 0.0066 1.4E-07 51.5 2.9 22 39-60 3-24 (179)
483 cd03224 ABC_TM1139_LivF_branch 95.8 0.0071 1.5E-07 53.2 3.2 23 39-61 28-50 (222)
484 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0072 1.6E-07 53.2 3.2 23 39-61 32-54 (220)
485 PRK10751 molybdopterin-guanine 95.8 0.0075 1.6E-07 50.7 3.1 25 36-60 5-29 (173)
486 PRK00300 gmk guanylate kinase; 95.8 0.0082 1.8E-07 52.1 3.5 23 38-60 6-28 (205)
487 KOG3886 GTP-binding protein [S 95.8 0.02 4.3E-07 49.7 5.6 75 139-223 53-133 (295)
488 cd01131 PilT Pilus retraction 95.8 0.0063 1.4E-07 52.7 2.7 23 39-61 3-25 (198)
489 cd01857 HSR1_MMR1 HSR1/MMR1. 95.8 0.012 2.7E-07 47.8 4.3 52 168-221 4-57 (141)
490 cd03260 ABC_PstB_phosphate_tra 95.8 0.0071 1.5E-07 53.4 3.1 23 39-61 28-50 (227)
491 TIGR02315 ABC_phnC phosphonate 95.8 0.0069 1.5E-07 54.1 3.0 23 39-61 30-52 (243)
492 cd03218 ABC_YhbG The ABC trans 95.8 0.0078 1.7E-07 53.4 3.3 23 39-61 28-50 (232)
493 cd03259 ABC_Carb_Solutes_like 95.8 0.0076 1.6E-07 52.7 3.2 23 39-61 28-50 (213)
494 PF02263 GBP: Guanylate-bindin 95.8 0.0079 1.7E-07 54.4 3.4 32 36-67 20-52 (260)
495 cd03292 ABC_FtsE_transporter F 95.8 0.008 1.7E-07 52.5 3.3 23 39-61 29-51 (214)
496 cd03215 ABC_Carb_Monos_II This 95.8 0.0083 1.8E-07 51.1 3.3 24 38-61 27-50 (182)
497 COG0411 LivG ABC-type branched 95.8 0.0024 5.3E-08 55.9 -0.0 23 39-61 32-54 (250)
498 PRK15177 Vi polysaccharide exp 95.8 0.0077 1.7E-07 52.8 3.1 23 39-61 15-37 (213)
499 TIGR01271 CFTR_protein cystic 95.8 0.037 8E-07 62.2 9.1 22 40-61 1248-1269(1490)
500 PF05621 TniB: Bacterial TniB 95.8 0.063 1.4E-06 49.0 9.0 42 36-78 60-101 (302)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.4e-47 Score=379.09 Aligned_cols=347 Identities=50% Similarity=0.711 Sum_probs=319.1
Q ss_pred CchhhhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEE
Q 017631 1 MATMESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLH 80 (368)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~ 80 (368)
|.+|+++++++|.+|++|..++. ..+..+|+|+|||.||+||||++|++.|..|+|+|.+.|||+|.++++.
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~--------~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~ 72 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGS--------SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLS 72 (657)
T ss_pred CchhhhccccchHHHHHHHHhcC--------CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecc
Confidence 57899999999999999999982 2335899999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceeee-cCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCCh
Q 017631 81 KTEPGLQEYAEFL-HLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPE 159 (368)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~ 159 (368)
+...+..+|+++. +.+...++|+..++++|..+++++.|.+.++|+.++.+.+++++.+++++||+||+......++++
T Consensus 73 ~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~ 152 (657)
T KOG0446|consen 73 IVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPD 152 (657)
T ss_pred cccCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCc
Confidence 9887778899998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCC
Q 017631 160 SVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHP 239 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g 239 (368)
.+..++.+|+..|+..++++|++|++++.++.+++++++++++||.+.||++|+||+|+.+.+++....+.+..+++..|
T Consensus 153 di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g 232 (657)
T KOG0446|consen 153 DIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVG 232 (657)
T ss_pred cHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred eEEEEeCCccccccCccHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 017631 240 WVGIVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESE 319 (368)
Q Consensus 240 ~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~~~~~ 319 (368)
|+++.++++++++...+...+...|..||..++.|..+.+++|++.|.+.|...+..|+++.+|.+...++..+.+.+++
T Consensus 233 ~v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~e 312 (657)
T KOG0446|consen 233 YVGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDE 312 (657)
T ss_pred eeeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 99999999999988888889999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHHcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017631 320 LDHLGR--PVAVDAGAQLYTILELCRSFDRIFKEHLDG 355 (368)
Q Consensus 320 L~~l~~--~~~~~~~~~~~~l~~~~~~f~~~~~~~l~g 355 (368)
|.++|. +........+..+...|..|.+.+....++
T Consensus 313 l~~~g~~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~ 350 (657)
T KOG0446|consen 313 LNRIGAVDVDLANSAALLAIIREDPRGLRTGVIGKLDL 350 (657)
T ss_pred HHHhcccCCccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 999994 322333345556666677777665544444
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=3.5e-42 Score=302.93 Aligned_cols=238 Identities=66% Similarity=1.001 Sum_probs=215.0
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecC
Q 017631 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTE 83 (368)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~ 83 (368)
|+.|.+++++++++..+++... ..++|+|+|||++|+||||++|+|+|..++|++.+.||++|+++++++..
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~--------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~ 72 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSS 72 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCC
Confidence 7889999999999887776521 24899999999999999999999999998999999999999999998743
Q ss_pred CCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHH
Q 017631 84 PGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~ 163 (368)
+.|..+...++..+.+++++.+.|+.+++.+.+.+.+||++++.+++++|++++++||||||+......+++..+..
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~ 149 (240)
T smart00053 73 ---TEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEE 149 (240)
T ss_pred ---CcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHH
Confidence 56778888888888999999999999999888888999999999999999999999999999987655555566788
Q ss_pred HHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEE
Q 017631 164 EIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243 (368)
Q Consensus 164 ~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v 243 (368)
.+.+++..|+++++.+||+|++++.++.+++.+++++.+++.+.|+++|+||+|..++++++.++++++..++.+||+++
T Consensus 150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v 229 (240)
T smart00053 150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGV 229 (240)
T ss_pred HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEE
Confidence 89999999999888899999999999999988889999999999999999999999988889999999999999999999
Q ss_pred EeCCccccc
Q 017631 244 VNRSQADIN 252 (368)
Q Consensus 244 ~~~s~~~~~ 252 (368)
.|+|+.+++
T Consensus 230 ~nr~~~d~~ 238 (240)
T smart00053 230 VNRSQKDIE 238 (240)
T ss_pred ECCChHHhh
Confidence 999988653
No 3
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.98 E-value=2.4e-30 Score=240.68 Aligned_cols=283 Identities=29% Similarity=0.470 Sum_probs=224.8
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCC----CCcccChHHHHH
Q 017631 34 WEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLP----KKKFTDFSIVRK 108 (368)
Q Consensus 34 ~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 108 (368)
...||+|+|||++||||||+++.+....+||+|.| +.||.|+.+.+..+ +-..+.|.... -.+..|+.+++.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEG---PyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEG---PHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccC---cchhhhhccccccccccchhHHHHHHH
Confidence 34799999999999999999999999999999997 79999999987443 33444443332 245678999999
Q ss_pred HHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC
Q 017631 109 EIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ 188 (368)
Q Consensus 109 ~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~ 188 (368)
+++-.+......+..+|+.+|.+.+.+|+.+.++|||+||++.+...+...+..+.+..+.+.|+.++++||||+.+++.
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 99888888788899999999999999999999999999999987666555556777889999999999999999999999
Q ss_pred cccchHHHHHHHhhCCCCCceEEeeccCcccCCc----chHHHhhhCCCccC-CCCeEEEEeCCccccccCccHHHHHHH
Q 017631 189 DLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG----TNALDILEGRSYPL-QHPWVGIVNRSQADINKNVDMIAARRR 263 (368)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~----~~~~~~~~~~~~~~-~~g~~~v~~~s~~~~~~~~~~~~~~~~ 263 (368)
|...+-.-.+...++|.|+|+|+|+||.|+.... ..+..++.++.+++ .+||++|+.-.+.. ++.++ .-+..
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns-sdSId--aIR~Y 538 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS-SESIE--AIREY 538 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc-chhHH--HHHHH
Confidence 9888888889999999999999999999998542 24788889888777 47999888643321 22222 23455
Q ss_pred HHhHhcCCCCCCch---hhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 017631 264 EHEFFATSPDYGHL---ATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESELDH 322 (368)
Q Consensus 264 E~~~f~~~~~~~~~---~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~~~~~L~~ 322 (368)
|..||..+..+... +.+..+.+|.=.+++.+++.+++.+.............++.++..
T Consensus 539 EE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFNLEtEWKN 600 (980)
T KOG0447|consen 539 EEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFNLETEWKN 600 (980)
T ss_pred HHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 77898886654321 345666677778888899888888887777776666666666543
No 4
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=1.8e-25 Score=197.17 Aligned_cols=213 Identities=19% Similarity=0.341 Sum_probs=157.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
...|++||+||+|||||+|+|+|.++ ..+|+.|-+.+ ..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~QTTR------------------------------------~~ 44 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR------------------------------------NR 44 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCcchhh------------------------------------hh
Confidence 45799999999999999999999998 67777772222 34
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
+.| +...+..++++|||||+...... +.+.+...+.+.+..+|++ |+|+++...+...+..
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~pk~~-----l~~~m~~~a~~sl~dvDli-lfvvd~~~~~~~~d~~ 105 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKPKHA-----LGELMNKAARSALKDVDLI-LFVVDADEGWGPGDEF 105 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCcchH-----HHHHHHHHHHHHhccCcEE-EEEEeccccCCccHHH
Confidence 444 55666789999999999875333 7788888899999999955 5666666666665544
Q ss_pred HHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCcc---ccccCccHHHHHHHHHhHhcCCCC
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQA---DINKNVDMIAARRREHEFFATSPD 273 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~---~~~~~~~~~~~~~~E~~~f~~~~~ 273 (368)
++..+.....|.++++||+|...+...+..+.. ......+|..+++.|+. ++..+.+.+...++|.++++....
T Consensus 106 -il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 106 -ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred -HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 566666666899999999999987664334333 22233455566666664 455666677777788888888877
Q ss_pred CCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 017631 274 YGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDE 315 (368)
Q Consensus 274 ~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~ 315 (368)
.++.++++ ...+.++|.+....++++|+.....-.+.+.
T Consensus 183 itD~~~rf---~~aEiiREk~~~~l~eElPhsv~VeIe~~~~ 221 (298)
T COG1159 183 ITDRPERF---LAAEIIREKLLLLLREELPHSVAVEIEEFEE 221 (298)
T ss_pred ccCChHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEe
Confidence 88888888 7788899999999999999977544433333
No 5
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.92 E-value=4.4e-24 Score=180.68 Aligned_cols=167 Identities=36% Similarity=0.499 Sum_probs=133.1
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcc-cceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 40 VAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQ-EYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
|+|+|.+|||||||||+|+|.+++|++.++||++|+.++......... ..............++..+.+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999999999866544321 1111122225667889999999988877777
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL 198 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l 198 (368)
+....++.....+....+...+++||||||+.+..... ..++.+|+..+|+ +++|.+++..+...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~-vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADV-VIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEE-EEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCE-EEEEeccCcccchHHHHHH
Confidence 76777888888899999999999999999998744331 3788999999994 5566788888888888888
Q ss_pred HHhhCCCCCceEEeeccC
Q 017631 199 SREVDPTGERTFGVLTKL 216 (368)
Q Consensus 199 ~~~~~~~~~~~i~VltK~ 216 (368)
.+..++...++++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 899999999999999995
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=3e-21 Score=175.76 Aligned_cols=209 Identities=16% Similarity=0.168 Sum_probs=130.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.|+++|.+|||||||+|+|+|.++..++.. .+|+.+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~----------------------------------------- 40 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS----------------------------------------- 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-----------------------------------------
Confidence 689999999999999999999986333222 12322211
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
+ +...+..++.++||||+..... .+.+.+...+..++..+|++++++++ +..... . ..
T Consensus 41 -~-------------i~~~~~~qii~vDTPG~~~~~~-----~l~~~~~~~~~~~l~~aDvvl~VvD~-~~~~~~-~-~~ 98 (270)
T TIGR00436 41 -G-------------IHTTGASQIIFIDTPGFHEKKH-----SLNRLMMKEARSAIGGVDLILFVVDS-DQWNGD-G-EF 98 (270)
T ss_pred -E-------------EEEcCCcEEEEEECcCCCCCcc-----hHHHHHHHHHHHHHhhCCEEEEEEEC-CCCCch-H-HH
Confidence 0 2222334689999999976421 13444455667889999977766554 332222 2 33
Q ss_pred HHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCC-CCeEEEEeCCccccccCccHHHHHHHHHhHhcCCCCCCc
Q 017631 198 LSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQ-HPWVGIVNRSQADINKNVDMIAARRREHEFFATSPDYGH 276 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~ 276 (368)
+...+...+.|+++|+||+|+..+.. ..+.+........ ..+++++...+.+++.+.+.+...+.+.++++.....++
T Consensus 99 i~~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 99 VLTKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 44555556789999999999975432 2222111000111 145666666666666666666655555555555555555
Q ss_pred hhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 017631 277 LATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSID 314 (368)
Q Consensus 277 ~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~ 314 (368)
.++++ ...+.+++.+..++.+++|+.....-..+.
T Consensus 178 ~~~~~---~~~e~ire~~~~~~~~e~p~~~~~~~~~~~ 212 (270)
T TIGR00436 178 QPDRF---KISEIIREKIIRYTKEEIPHSVRVEIERKS 212 (270)
T ss_pred CCHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEE
Confidence 55555 778889999999999999997765544443
No 7
>PRK00089 era GTPase Era; Reviewed
Probab=99.83 E-value=6.3e-20 Score=169.18 Aligned_cols=211 Identities=19% Similarity=0.272 Sum_probs=126.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
...|+|+|.+|||||||+|+|+|.++..++..+.|... .
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~-----------------------------------------~ 43 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRH-----------------------------------------R 43 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccc-----------------------------------------c
Confidence 45799999999999999999999987433332222111 0
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
+.+ +...+..+++++||||+..... .+.+.+...+..++..+|+++++++ +...+... ..
T Consensus 44 i~~-------------i~~~~~~qi~~iDTPG~~~~~~-----~l~~~~~~~~~~~~~~~D~il~vvd-~~~~~~~~-~~ 103 (292)
T PRK00089 44 IRG-------------IVTEDDAQIIFVDTPGIHKPKR-----ALNRAMNKAAWSSLKDVDLVLFVVD-ADEKIGPG-DE 103 (292)
T ss_pred EEE-------------EEEcCCceEEEEECCCCCCchh-----HHHHHHHHHHHHHHhcCCEEEEEEe-CCCCCChh-HH
Confidence 000 2222335899999999976432 2445556667788899997776654 44333333 23
Q ss_pred HHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccC-CCCeEEEEeCCccccccCccHHHHHHHHHhHhcCCCCCC
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPL-QHPWVGIVNRSQADINKNVDMIAARRREHEFFATSPDYG 275 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~ 275 (368)
.++..+...+.|+++|+||+|+..........+..-.... ...++.+......+...+.+.+.....+.++++.....+
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~t 183 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQIT 183 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3556665557899999999999854333322222111101 122344444444444454444444444444444444444
Q ss_pred chhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 017631 276 HLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINR 311 (368)
Q Consensus 276 ~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~ 311 (368)
+.+.+. ...+.+++.+..++.+++|+.......
T Consensus 184 d~~~r~---~~~EiiRe~~~~~l~~e~p~~~~v~~~ 216 (292)
T PRK00089 184 DRPERF---LAAEIIREKLLRLLGDELPYSVAVEIE 216 (292)
T ss_pred CCCHHH---HHHHHHHHHHHhhCCccCCceEEEEEE
Confidence 444444 677788999999999999997654433
No 8
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=4.1e-19 Score=166.20 Aligned_cols=211 Identities=17% Similarity=0.223 Sum_probs=137.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..|+++|++|+|||||+|+|+|.++..++..+ +|+...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~----------------------------------------- 91 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSII----------------------------------------- 91 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcE-----------------------------------------
Confidence 37999999999999999999998863222211 111110
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
. .+...+..++.||||||+...... +...+...+..++..+|+++++++ +...+...+ .
T Consensus 92 -------------~-~~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~~~~~l~~aDvil~VvD-~~~s~~~~~-~ 150 (339)
T PRK15494 92 -------------T-GIITLKDTQVILYDTPGIFEPKGS-----LEKAMVRCAWSSLHSADLVLLIID-SLKSFDDIT-H 150 (339)
T ss_pred -------------E-EEEEeCCeEEEEEECCCcCCCccc-----HHHHHHHHHHHHhhhCCEEEEEEE-CCCCCCHHH-H
Confidence 0 011123347899999999653221 334444555667889997776664 443333332 2
Q ss_pred HHHHhhCCCCCceEEeeccCcccCCcc-hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHHHHhHhcCCCCCC
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDKGT-NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRREHEFFATSPDYG 275 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~ 275 (368)
.++..+...+.+.++|+||+|+.+... +..+.+.. ......++++++.++.+++.+++.+...+.|.++++.....+
T Consensus 151 ~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~t 228 (339)
T PRK15494 151 NILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDIT 228 (339)
T ss_pred HHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 345555555678899999999864311 12222221 111134567777777777888888888888888888888788
Q ss_pred chhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 017631 276 HLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDE 315 (368)
Q Consensus 276 ~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~ 315 (368)
+.+.++ ...+.+++.+...+.+++|+.....-..+.+
T Consensus 229 d~~~~~---~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~ 265 (339)
T PRK15494 229 DLPMRF---IAAEITREQLFLNLQKELPYKLTVQTEKWED 265 (339)
T ss_pred CCCHHH---HHHHHHHHHHHhhCCcccCceEEEEEEEEEE
Confidence 877776 7788899999999999999987655555443
No 9
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=99.77 E-value=3e-18 Score=157.91 Aligned_cols=134 Identities=37% Similarity=0.600 Sum_probs=118.9
Q ss_pred HHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHH
Q 017631 226 LDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGI 305 (368)
Q Consensus 226 ~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~ 305 (368)
.+++.|+.+++++||++|+|+|+.++....+..+++..|..||..+++|+.+.+++|+..|+.+|++.|.++|+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 57888999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcCC
Q 017631 306 TSLINRSIDELESELDHLGRPVAVDAGAQLYTILELCRSFDRIFKEHLDGGYCI 359 (368)
Q Consensus 306 ~~~i~~~l~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~l~g~~~~ 359 (368)
...|++.+.+++++|..||+++..+.++++.+|.+++..|++.+.++++|.|..
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~ 135 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSD 135 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999999986777899999999999999999999999986
No 10
>PRK09866 hypothetical protein; Provisional
Probab=99.76 E-value=3.9e-16 Score=151.45 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=39.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEE
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQL 79 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~ 79 (368)
|.++|+|..|+|||||+|+|+|..++|++...+|..|+.+..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~ 111 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRH 111 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEe
Confidence 999999999999999999999999999999999999986654
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=7.4e-19 Score=144.52 Aligned_cols=143 Identities=24% Similarity=0.359 Sum_probs=86.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
+|+++|.||+|||||+|+|+|.+. .++.-+ +|..+.+-.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~--------------------------------------- 41 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGI--------------------------------------- 41 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEE---------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEE---------------------------------------
Confidence 689999999999999999999984 333222 111111111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccchHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ ......+.||||||+++....+ .+ +.++..|+ ..+|.+|+++++.+ .+..
T Consensus 42 ---------------~-~~~~~~~~lvDlPG~ysl~~~s--~e-----e~v~~~~l~~~~~D~ii~VvDa~~----l~r~ 94 (156)
T PF02421_consen 42 ---------------F-KLGDQQVELVDLPGIYSLSSKS--EE-----ERVARDYLLSEKPDLIIVVVDATN----LERN 94 (156)
T ss_dssp ---------------E-EETTEEEEEEE----SSSSSSS--HH-----HHHHHHHHHHTSSSEEEEEEEGGG----HHHH
T ss_pred ---------------E-EecCceEEEEECCCcccCCCCC--cH-----HHHHHHHHhhcCCCEEEEECCCCC----HHHH
Confidence 1 1123589999999998865432 11 45567776 58997776655533 2445
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchH--HHhhhCCCccCCCCeEEEEeCCcccc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNA--LDILEGRSYPLQHPWVGIVNRSQADI 251 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~--~~~~~~~~~~~~~g~~~v~~~s~~~~ 251 (368)
+.++.++...+.|+++|+||+|.+.+.... .+.+. ..++.+.+++..++.++.
T Consensus 95 l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls---~~Lg~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 95 LYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLS---ERLGVPVIPVSARTGEGI 149 (156)
T ss_dssp HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHH---HHHTS-EEEEBTTTTBTH
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHH---HHhCCCEEEEEeCCCcCH
Confidence 567788888899999999999999654421 11221 223445556666655544
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=155.81 Aligned_cols=155 Identities=20% Similarity=0.264 Sum_probs=103.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
|.|++||+||+|||||+|+|+|.+. ..+...|-
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pG------------------------------------------ 36 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPG------------------------------------------ 36 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCC------------------------------------------
Confidence 8999999999999999999999986 44444441
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
++.|.++-... +....+.+|||+|+.... .+.+.+.+...+...+.++|+++ +|+++..+....+ ..
T Consensus 37 ------vTRDr~y~~~~-~~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvil-fvVD~~~Git~~D-~~ 103 (444)
T COG1160 37 ------VTRDRIYGDAE-WLGREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVIL-FVVDGREGITPAD-EE 103 (444)
T ss_pred ------CccCCccceeE-EcCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEE-EEEeCCCCCCHHH-HH
Confidence 11122222222 233459999999998633 23478888999999999999665 5556555554444 44
Q ss_pred HHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCc---cccccCccHHH
Q 017631 198 LSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQ---ADINKNVDMIA 259 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~---~~~~~~~~~~~ 259 (368)
+++.+.+.++|+++|+||+|....+....++. .+ |+-...+.|+ .|+..+.+.+.
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efy-----sl--G~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYEFY-----SL--GFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHHHH-----hc--CCCCceEeehhhccCHHHHHHHHH
Confidence 78888877899999999999985544334432 23 4444455555 44444444333
No 13
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=148.42 Aligned_cols=158 Identities=25% Similarity=0.264 Sum_probs=101.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.+=-.++++|.||+|||||+|+|++.+. ..+|..| ++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~------GT-------------------------------- 251 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA------GT-------------------------------- 251 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC------CC--------------------------------
Confidence 3557799999999999999999999987 6666666 11
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+.|+++..+. -+..++.|+||.|+..+... +.+.=.+-++..++++|.+ |+|.+++..+...+
T Consensus 252 ----------TRDviee~i~-i~G~pv~l~DTAGiRet~d~-----VE~iGIeRs~~~i~~ADlv-L~v~D~~~~~~~~d 314 (454)
T COG0486 252 ----------TRDVIEEDIN-LNGIPVRLVDTAGIRETDDV-----VERIGIERAKKAIEEADLV-LFVLDASQPLDKED 314 (454)
T ss_pred ----------ccceEEEEEE-ECCEEEEEEecCCcccCccH-----HHHHHHHHHHHHHHhCCEE-EEEEeCCCCCchhh
Confidence 1233333332 24468999999999864332 3333345567789999954 56666665443443
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
.. +.. ..+.++|+++|+||.|+..+...... ....+..+..++..+.+|++.+.+.+.
T Consensus 315 ~~-~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~ 372 (454)
T COG0486 315 LA-LIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIK 372 (454)
T ss_pred HH-HHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHH
Confidence 33 333 45668999999999999976431110 112233466777777666555444443
No 14
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=8.8e-17 Score=150.79 Aligned_cols=128 Identities=21% Similarity=0.345 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
...|.|++||.+|+|||||+|+|+|.++...+...+|+.|++-.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------ 230 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------ 230 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE------------------------------------
Confidence 36799999999999999999999998754444444555553322
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch-
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS- 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~- 193 (368)
+..++...+.|+||||+.+.. +..+.+.+.. +..++.++|++++|++.+......+
T Consensus 231 ------------------i~~~~~~~i~l~DT~G~~~~l----~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 231 ------------------LDLPDGGEVLLTDTVGFIRDL----PHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQI 287 (351)
T ss_pred ------------------EEeCCCceEEEEecCcccccC----CHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHH
Confidence 223344579999999996521 2334455554 4567889997766655433222111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+..+++.+...+.|+++|+||+|+.++
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 1234555655557899999999999754
No 15
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-17 Score=145.36 Aligned_cols=210 Identities=13% Similarity=0.224 Sum_probs=121.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|.||+|||||.|.++|.++.|++..+-|. + ..
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT-----r------------------------------------~~ 110 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT-----R------------------------------------HR 110 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccce-----e------------------------------------ee
Confidence 457999999999999999999999996665543221 1 12
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC-CcccchHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN-QDLATSDA 195 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~-~~~~~~~~ 195 (368)
+.| +...+..+++|+||||+......- ...+...+..-.+..+.++|+++++++.++ ........
T Consensus 111 ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r-~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~v 176 (379)
T KOG1423|consen 111 ILG-------------IITSGETQLVFYDTPGLVSKKMHR-RHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRV 176 (379)
T ss_pred eeE-------------EEecCceEEEEecCCcccccchhh-hHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHH
Confidence 223 556667799999999998854321 111222223335667889997765555442 23333445
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHH---hhhC--------------------CCccCCCCe---EEEEeCCcc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALD---ILEG--------------------RSYPLQHPW---VGIVNRSQA 249 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~---~~~~--------------------~~~~~~~g~---~~v~~~s~~ 249 (368)
++.++.+. ..|.|+|+||+|...+...+.+ .+.+ +.++...|| ..++..|+.
T Consensus 177 l~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL 254 (379)
T KOG1423|consen 177 LHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSAL 254 (379)
T ss_pred HHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecc
Confidence 55566654 4788999999999866442211 1110 011223455 345666654
Q ss_pred ccccCccHHHHHHHH----HhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHH
Q 017631 250 DINKNVDMIAARRRE----HEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITS 307 (368)
Q Consensus 250 ~~~~~~~~~~~~~~E----~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~ 307 (368)
. ..++..+...+.- .+|.+.....+ +..-.....+.+++.+.+++.+++|+-.+
T Consensus 255 ~-G~GikdlkqyLmsqa~~gpW~y~a~i~T---~~s~e~l~~e~VReklLd~~pqEVPY~lq 312 (379)
T KOG1423|consen 255 Y-GEGIKDLKQYLMSQAPPGPWKYPADIVT---EESPEFLCSESVREKLLDHLPQEVPYNLQ 312 (379)
T ss_pred c-ccCHHHHHHHHHhcCCCCCCCCCccccc---ccCHHHHHHHHHHHHHHhhCccccCcceE
Confidence 2 2334444444332 22222222112 22222245567778888888999998654
No 16
>PRK11058 GTPase HflX; Provisional
Probab=99.72 E-value=1.3e-16 Score=153.04 Aligned_cols=128 Identities=20% Similarity=0.316 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+|+|++||.+|||||||+|+|+|.++...+.-.+|..|++-.
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------ 238 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------ 238 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE------------------------------------
Confidence 46799999999999999999999998864222223444442211
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch-
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS- 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~- 193 (368)
+..++...+.|+||||+.+. .+.++.+.+.. +..++..+|.+++|++.++.....+
T Consensus 239 ------------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l 295 (426)
T PRK11058 239 ------------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENI 295 (426)
T ss_pred ------------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHH
Confidence 22233336789999999652 23345555554 4667889997776665543322111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+..++..+...+.|+++|+||+|+.+.
T Consensus 296 ~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 296 EAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 1234566666567899999999999753
No 17
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=2e-16 Score=150.09 Aligned_cols=182 Identities=17% Similarity=0.167 Sum_probs=103.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-++.|++||.+|||||||||+|++.+.-......+|+.|..-.
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi------------------------------------- 200 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV------------------------------------- 200 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE-------------------------------------
Confidence 4568999999999999999999998741112223555553222
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC---Ccccc
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN---QDLAT 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~---~~~~~ 192 (368)
+...+...++|+||||+......+ ..+ .....++++++|+++++++... .+..
T Consensus 201 -----------------v~~~~~~~i~~vDtPGi~~~a~~~--~~L----g~~~l~~i~radvlL~VVD~s~~~~~d~~- 256 (390)
T PRK12298 201 -----------------VRVDDERSFVVADIPGLIEGASEG--AGL----GIRFLKHLERCRVLLHLIDIAPIDGSDPV- 256 (390)
T ss_pred -----------------EEeCCCcEEEEEeCCCccccccch--hhH----HHHHHHHHHhCCEEEEEeccCcccccChH-
Confidence 222233359999999998754321 112 1222357889997777665431 1111
Q ss_pred hHHHHHHHhhCC-----CCCceEEeeccCcccCCcchHHHhhhC--CCccCCCCeEEEEeCCccccccCccHHHHHHHHH
Q 017631 193 SDAVKLSREVDP-----TGERTFGVLTKLDLMDKGTNALDILEG--RSYPLQHPWVGIVNRSQADINKNVDMIAARRREH 265 (368)
Q Consensus 193 ~~~~~l~~~~~~-----~~~~~i~VltK~D~~~~~~~~~~~~~~--~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E~ 265 (368)
.....+.+++.. ...|.++|+||+|+..... ..+.++. .........+.++..+..++..+.+.+...+.+.
T Consensus 257 e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 257 ENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 111223333332 3589999999999975432 2222211 0111112355666666666666666666666666
Q ss_pred hHhcCCCCCCchhh
Q 017631 266 EFFATSPDYGHLAT 279 (368)
Q Consensus 266 ~~f~~~~~~~~~~~ 279 (368)
++++....+++.+.
T Consensus 336 ~~~~~~~~~td~~~ 349 (390)
T PRK12298 336 PREEAEEAEAPEKV 349 (390)
T ss_pred cccCCcccccCccH
Confidence 55555445554443
No 18
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=142.99 Aligned_cols=158 Identities=20% Similarity=0.312 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHHHHhccCC-CCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecC
Q 017631 5 ESLIGLVNRIQRACTVLGDYG-GDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTE 83 (368)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~ 83 (368)
+.+..+++++.+-++-|.... ....+|.+..++|+|+|.|.||+|||||+++|++.+. -+..+|
T Consensus 135 GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~YP--------- 199 (346)
T COG1084 135 GRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPYP--------- 199 (346)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCCC---------
Confidence 444455555555444444321 2346899999999999999999999999999999874 233344
Q ss_pred CCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHH
Q 017631 84 PGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~ 163 (368)
|+.+-+.|.....+...+.+|||||+.+.+..+ .-
T Consensus 200 ----------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E-----rN 234 (346)
T COG1084 200 ----------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE-----RN 234 (346)
T ss_pred ----------------------------------------ccccceeEeeeecCCceEEEecCCcccCCChHH-----hc
Confidence 333344444555566689999999998865542 22
Q ss_pred HHHHHHHHhhcCCCeEEEEEeeCCC--cccchHHHHHHHhhCCC-CCceEEeeccCcccCCc
Q 017631 164 EIETMVRSYIEKPNCLILAITPANQ--DLATSDAVKLSREVDPT-GERTFGVLTKLDLMDKG 222 (368)
Q Consensus 164 ~~~~~~~~~~~~~d~iil~v~~~~~--~~~~~~~~~l~~~~~~~-~~~~i~VltK~D~~~~~ 222 (368)
.++..+...+++-+.+||++.+.+. .+.-..-..|..++.+. ..|+++|+||+|..+.+
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 3455555556666556777666554 33333334466666654 46899999999999654
No 19
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.8e-16 Score=154.39 Aligned_cols=153 Identities=21% Similarity=0.299 Sum_probs=101.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+++|+||+|||||+|+|+|.+. .+.+.|=+.. ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~VgNwpGvTV------------------------------------Ekk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KVGNWPGVTV------------------------------------EKK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------eecCCCCeeE------------------------------------EEE
Confidence 4699999999999999999999883 3444442222 111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcccchHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~~~~~~ 195 (368)
.| ........+.+||+||.++....+.+ +..++.|+. .+|++|.+|++++ -.+.
T Consensus 42 eg-------------~~~~~~~~i~ivDLPG~YSL~~~S~D-------E~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG-------------KLKYKGHEIEIVDLPGTYSLTAYSED-------EKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE-------------EEEecCceEEEEeCCCcCCCCCCCch-------HHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 11 11223346999999999987665322 566788875 7797776665555 3456
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccH
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDM 257 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~ 257 (368)
+.+.-++...+.|+++++|++|..++.....+.-+ -+..++.+.+++.....+|+++..+.
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~-L~~~LGvPVv~tvA~~g~G~~~l~~~ 158 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEK-LSKLLGVPVVPTVAKRGEGLEELKRA 158 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHH-HHHHhCCCEEEEEeecCCCHHHHHHH
Confidence 66777888889999999999999976442222111 13445667777777777765544443
No 20
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=6.7e-16 Score=142.04 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccc
Q 017631 10 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEY 89 (368)
Q Consensus 10 ~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~ 89 (368)
-+.+|+..++.+........-.+.....|.|++||.+|||||||+|+|+|..++-.+.-+.|-.|+.-+
T Consensus 165 rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~----------- 233 (411)
T COG2262 165 RIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR----------- 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE-----------
Confidence 355666666666655444444445568999999999999999999999999875455556776664433
Q ss_pred eeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHH
Q 017631 90 AEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMV 169 (368)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~ 169 (368)
+.-++..++.|-||-||++. -+..+.+.+.+ +
T Consensus 234 -------------------------------------------~~l~~g~~vlLtDTVGFI~~----LP~~LV~AFks-T 265 (411)
T COG2262 234 -------------------------------------------IELGDGRKVLLTDTVGFIRD----LPHPLVEAFKS-T 265 (411)
T ss_pred -------------------------------------------EEeCCCceEEEecCccCccc----CChHHHHHHHH-H
Confidence 23344568999999999984 34557776665 4
Q ss_pred HHhhcCCCeEEEEEeeCCCcccch--HHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCC
Q 017631 170 RSYIEKPNCLILAITPANQDLATS--DAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRS 247 (368)
Q Consensus 170 ~~~~~~~d~iil~v~~~~~~~~~~--~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s 247 (368)
.+-+.++|.+++||+.+..++..+ ....++.++.-...|+|.|+||+|++.+......+... . . ..+.++..+
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~-~---~-~~v~iSA~~ 340 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG-S---P-NPVFISAKT 340 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc-C---C-CeEEEEecc
Confidence 566789998887776665533332 34457778877789999999999999664411111111 1 1 345666666
Q ss_pred ccccccCccHH
Q 017631 248 QADINKNVDMI 258 (368)
Q Consensus 248 ~~~~~~~~~~~ 258 (368)
+.+++.+...+
T Consensus 341 ~~gl~~L~~~i 351 (411)
T COG2262 341 GEGLDLLRERI 351 (411)
T ss_pred CcCHHHHHHHH
Confidence 65554433333
No 21
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=148.57 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=102.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
+..+|+|+|.||+|||||+|+|+|.+-.-++.. .+||.+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~---------------------------------------- 216 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS---------------------------------------- 216 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc----------------------------------------
Confidence 568999999999999999999999875333332 233333
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
|.+.+. .+...+.+|||.|+.....-..+. ...-..-+...+..+|++ ++|.++..++..++
T Consensus 217 --------------I~~~~e-~~~~~~~liDTAGiRrk~ki~e~~--E~~Sv~rt~~aI~~a~vv-llviDa~~~~~~qD 278 (444)
T COG1160 217 --------------IDIEFE-RDGRKYVLIDTAGIRRKGKITESV--EKYSVARTLKAIERADVV-LLVIDATEGISEQD 278 (444)
T ss_pred --------------eeeeEE-ECCeEEEEEECCCCCcccccccce--EEEeehhhHhHHhhcCEE-EEEEECCCCchHHH
Confidence 333333 344579999999998755431111 111122245567899955 56667777777776
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhC--CCccCCCCeEEEEeCCccc
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEG--RSYPLQHPWVGIVNRSQAD 250 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~--~~~~~~~g~~~v~~~s~~~ 250 (368)
. +++..+...++++++|+||||+++..+...+.... ......++|.++++.|+..
T Consensus 279 ~-~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 279 L-RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred H-HHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence 5 48888888899999999999999763322222111 1233356888888888863
No 22
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=4.6e-16 Score=144.80 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=92.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.-++.|++||.+|||||||||+|++.+.-......+|..|..-.
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------ 199 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------ 199 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE------------------------------------
Confidence 45688999999999999999999987631111123444442221
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+...+...++++||||+......+ ..+ .....+++++++++++|++.++.+ ..+.
T Consensus 200 ------------------v~~~~~~~~~i~D~PGli~ga~~~--~gL----g~~flrhie~a~vlI~ViD~s~~~-s~e~ 254 (335)
T PRK12299 200 ------------------VRVDDYKSFVIADIPGLIEGASEG--AGL----GHRFLKHIERTRLLLHLVDIEAVD-PVED 254 (335)
T ss_pred ------------------EEeCCCcEEEEEeCCCccCCCCcc--ccH----HHHHHHHhhhcCEEEEEEcCCCCC-CHHH
Confidence 222244579999999998754431 112 233455678899777666554322 1222
Q ss_pred HHHHH---HhhCC--CCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 195 AVKLS---REVDP--TGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 195 ~~~l~---~~~~~--~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
...+. ....+ ..+|.++|+||+|+.+.........+.........++.++..+..++++++..+.
T Consensus 255 ~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~ 324 (335)
T PRK12299 255 YKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALW 324 (335)
T ss_pred HHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 22232 33332 3689999999999975432111111100111223456666666555554444433
No 23
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.2e-15 Score=128.10 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=86.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|.|+++|+.|+|||||||+|+|.+-+. .++..|-..++.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LA----rtSktPGrTq~i----------------------------------- 63 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLA----RTSKTPGRTQLI----------------------------------- 63 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCccee----ecCCCCCcccee-----------------------------------
Confidence 68999999999999999999999976321 122222111110
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcC-CCeE-EEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEK-PNCL-ILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~i-il~v~~~~~~~~~~ 193 (368)
..+... ..+.|||+||+.-... +.+..+.+..++..|++. ++.. +++++++.......
T Consensus 64 ----------------Nff~~~-~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~ 123 (200)
T COG0218 64 ----------------NFFEVD-DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDL 123 (200)
T ss_pred ----------------EEEEec-CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHH
Confidence 011111 1388999999987432 345788899999999984 3311 22344555544443
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~ 223 (368)
+ .++.+.+...+.|+++|+||+|.+...+
T Consensus 124 D-~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 124 D-REMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred H-HHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 3 3577888888999999999999997654
No 24
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.66 E-value=5.8e-15 Score=143.27 Aligned_cols=154 Identities=23% Similarity=0.230 Sum_probs=91.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
+-++|+++|.+|+|||||+|+|+|.+..+++.. .+|+.+.+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~-------------------------------------- 255 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIE-------------------------------------- 255 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEE--------------------------------------
Confidence 457899999999999999999999875322221 12222211
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHH-HHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEI-ETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
..+.. +...+.++||||+.+... ..+.. ...+..++.++|++++|++. +......
T Consensus 256 ----------------~~i~~-~g~~i~l~DT~G~~~~~~------~ie~~gi~~~~~~~~~aD~il~VvD~-s~~~s~~ 311 (449)
T PRK05291 256 ----------------EHINL-DGIPLRLIDTAGIRETDD------EVEKIGIERSREAIEEADLVLLVLDA-SEPLTEE 311 (449)
T ss_pred ----------------EEEEE-CCeEEEEEeCCCCCCCcc------HHHHHHHHHHHHHHHhCCEEEEEecC-CCCCChh
Confidence 11211 234689999999864211 12211 22356789999977766544 4333222
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
+ ..++.. ..+.|+++|+||+|+.+.... . ......++.++..++.+++.+.+.+....
T Consensus 312 ~-~~~l~~--~~~~piiiV~NK~DL~~~~~~-~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 312 D-DEILEE--LKDKPVIVVLNKADLTGEIDL-E-------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred H-HHHHHh--cCCCCcEEEEEhhhccccchh-h-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 2 233333 346899999999999754321 1 11123466777777766666655554443
No 25
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=2.6e-15 Score=131.09 Aligned_cols=129 Identities=21% Similarity=0.338 Sum_probs=79.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
...|.|+|+|++|||||||+|+|++..+.+.+....|..+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~------------------------------------- 81 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR------------------------------------- 81 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE-------------------------------------
Confidence 4579999999999999999999999875333322222222110
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT-- 192 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~-- 192 (368)
.+..++...+++|||||+.+... ....+.+... ...+..+|+++++++........
T Consensus 82 -----------------~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~~~~-~~~~~~~d~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 82 -----------------RLRLPDGREVLLTDTVGFIRDLP----HQLVEAFRST-LEEVAEADLLLHVVDASDPDYEEQI 139 (204)
T ss_pred -----------------EEEecCCceEEEeCCCccccCCC----HHHHHHHHHH-HHHHhcCCeEEEEEECCCCChhhHH
Confidence 12222333789999999865321 2233333333 34567899777666543322111
Q ss_pred hHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 193 SDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 193 ~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
..+..++..+...+.|+++|+||+|+.+..
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 123345555555568999999999997653
No 26
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.65 E-value=2.5e-15 Score=125.93 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=78.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccc-cccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVT-RRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-..|+++|.+|+|||||+|+|+|.++.+......+ +....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 43 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR--------------------------------------- 43 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE---------------------------------------
Confidence 36799999999999999999999876333222111 10000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.+.......+.+|||||+...... ..+.+......++..+|.+++++.... .... ..
T Consensus 44 ----------------~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~-~~~~-~~ 100 (168)
T cd04163 44 ----------------GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASE-PIGE-GD 100 (168)
T ss_pred ----------------EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCC-ccCc-hH
Confidence 011223357899999999764322 223345556778899997776665543 2222 22
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+.+.+...+.|.++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 101 EFILELLKKSKTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHHHHhCCCEEEEEEchhcccc
Confidence 33555555557899999999999843
No 27
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=5.2e-15 Score=117.12 Aligned_cols=115 Identities=24% Similarity=0.332 Sum_probs=74.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
+|+|+|.+|+|||||+|+|+|.+..+++.. .+|+.+.. ..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~~-------------------------------------- 41 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-GQ-------------------------------------- 41 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-EE--------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-ee--------------------------------------
Confidence 589999999999999999999765555443 45554411 10
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
+ ......+.|+||||+.+....+ ..... ...+.+.+..+|.+++|+. ++.. .......
T Consensus 42 ---------------~-~~~~~~~~~vDtpG~~~~~~~~---~~~~~-~~~~~~~~~~~d~ii~vv~-~~~~-~~~~~~~ 99 (116)
T PF01926_consen 42 ---------------F-EYNNKKFILVDTPGINDGESQD---NDGKE-IRKFLEQISKSDLIIYVVD-ASNP-ITEDDKN 99 (116)
T ss_dssp ---------------E-EETTEEEEEEESSSCSSSSHHH---HHHHH-HHHHHHHHCTESEEEEEEE-TTSH-SHHHHHH
T ss_pred ---------------e-eeceeeEEEEeCCCCcccchhh---HHHHH-HHHHHHHHHHCCEEEEEEE-CCCC-CCHHHHH
Confidence 0 1123367899999998743221 01112 2234555589997776665 5442 2334445
Q ss_pred HHHhhCCCCCceEEeecc
Q 017631 198 LSREVDPTGERTFGVLTK 215 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK 215 (368)
+++.+. .+.|+++|+||
T Consensus 100 ~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 100 ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHH-TTSEEEEEEES
T ss_pred HHHHHh-cCCCEEEEEcC
Confidence 767776 78999999998
No 28
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.62 E-value=4.5e-15 Score=128.78 Aligned_cols=124 Identities=21% Similarity=0.325 Sum_probs=77.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCc--ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSG--IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~--~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+|++||.+|+|||||+|+|+|.+.+.++.. .+|+......
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999987655532 2333221111
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.......+++|||||+.+.... .+.+...+...+......+|++++ |.++.. +...+ .
T Consensus 44 -----------------~~~~~~~i~viDTPG~~d~~~~--~~~~~~~i~~~~~~~~~g~~~ill-Vi~~~~-~t~~d-~ 101 (196)
T cd01852 44 -----------------AVWDGRRVNVIDTPGLFDTSVS--PEQLSKEIVRCLSLSAPGPHAFLL-VVPLGR-FTEEE-E 101 (196)
T ss_pred -----------------EEECCeEEEEEECcCCCCccCC--hHHHHHHHHHHHHhcCCCCEEEEE-EEECCC-cCHHH-H
Confidence 0113347999999999875432 233344444444445678896654 455554 43333 2
Q ss_pred HHHHhhCCC-----CCceEEeeccCcccCCc
Q 017631 197 KLSREVDPT-----GERTFGVLTKLDLMDKG 222 (368)
Q Consensus 197 ~l~~~~~~~-----~~~~i~VltK~D~~~~~ 222 (368)
..++.+... ..++++|+||+|.+.+.
T Consensus 102 ~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 102 QAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 344333221 26899999999998654
No 29
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=1.1e-14 Score=148.81 Aligned_cols=158 Identities=22% Similarity=0.284 Sum_probs=91.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+++|++|+|||||+|+|+|.+. .++.-+.+.. .
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTv----e--------------------------------------- 39 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTV----E--------------------------------------- 39 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceE----e---------------------------------------
Confidence 5799999999999999999999864 2222111100 0
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccchHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~~~~ 195 (368)
..+. ....+...+.+|||||..+........+.. +.+++.|+ ..+|.++++++..+. ...
T Consensus 40 ----------~k~g-~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD~vI~VvDat~l----er~ 101 (772)
T PRK09554 40 ----------RKEG-QFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNL----ERN 101 (772)
T ss_pred ----------eEEE-EEEcCceEEEEEECCCccccccccccccHH---HHHHHHHHhccCCCEEEEEecCCcc----hhh
Confidence 0000 112234578999999998754321111222 22345564 489977766654331 222
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHH
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMI 258 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~ 258 (368)
..+..++...+.|+++|+||+|..++.....+. +.-...++.+.+++.....+++++..+.+
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~I 163 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLAI 163 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 335556666789999999999997543311111 11122345566777777666655444443
No 30
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.62 E-value=6.9e-15 Score=124.29 Aligned_cols=125 Identities=23% Similarity=0.280 Sum_probs=70.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|++||.+|||||||+|+|.+.+..+......|..|..-.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~---------------------------------------- 41 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGV---------------------------------------- 41 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceE----------------------------------------
Confidence 5899999999999999999987642111111222221100
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---H
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---A 195 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~ 195 (368)
+...+...+.|+||||+....... ..+ .....+.+..+|+++++++.....-..+. +
T Consensus 42 --------------~~~~~~~~~~l~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 42 --------------VRVDDGRSFVVADIPGLIEGASEG--KGL----GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred --------------EEcCCCCeEEEEecCcccCccccc--CCc----hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHH
Confidence 111222378999999986533221 011 12223445679977776655432111111 2
Q ss_pred HHHHHhhCC--CCCceEEeeccCcccCCcc
Q 017631 196 VKLSREVDP--TGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 196 ~~l~~~~~~--~~~~~i~VltK~D~~~~~~ 223 (368)
.+.+....+ .+.|.++|+||+|+.++..
T Consensus 102 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 102 RNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred HHHHHHhCccccccccEEEEEchhcCCchh
Confidence 222222222 3689999999999976543
No 31
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.61 E-value=6.2e-14 Score=135.38 Aligned_cols=159 Identities=20% Similarity=0.173 Sum_probs=89.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.+-++|+++|++|+|||||+|+|++.+.. .++..|.+.+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~a-----ivs~~pgtTr------------------------------------ 239 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRA-----IVSDIKGTTR------------------------------------ 239 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCc-----ccCCCCCcEE------------------------------------
Confidence 35678999999999999999999997642 2222221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+.+...+.. +...+.++||||+...... +...-...+..|++.+|++++|++. +.......
T Consensus 240 ------------d~~~~~i~~-~g~~v~l~DTaG~~~~~~~-----ie~~gi~~~~~~~~~aD~il~V~D~-s~~~s~~~ 300 (442)
T TIGR00450 240 ------------DVVEGDFEL-NGILIKLLDTAGIREHADF-----VERLGIEKSFKAIKQADLVIYVLDA-SQPLTKDD 300 (442)
T ss_pred ------------EEEEEEEEE-CCEEEEEeeCCCcccchhH-----HHHHHHHHHHHHHhhCCEEEEEEEC-CCCCChhH
Confidence 000011111 2346789999999653211 1111123456789999977766554 33332222
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
. ++..+...+.|+++|+||+|+... +...+. ......++.++..+ .+++.+++.+....
T Consensus 301 ~--~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~----~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 301 F--LIIDLNKSKKPFILVLNKIDLKIN--SLEFFV----SSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred H--HHHHHhhCCCCEEEEEECccCCCc--chhhhh----hhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 2 444454457899999999999744 121111 11223455555554 34445555554443
No 32
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.2e-14 Score=135.51 Aligned_cols=169 Identities=20% Similarity=0.288 Sum_probs=111.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHH---HHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVR---KEIQE 112 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~ 112 (368)
.--.|++.|+.|+||||++||++..+++|.|.++||.|..++. ++.+.+.+....+. ..-.|...+. .++..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve---gadG~e~vl~~~~s--~ek~d~~ti~~~~haL~~ 182 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE---GADGAEAVLATEGS--EEKIDMKTINQLAHALKP 182 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec---ccCCcceeeccCCC--cccccHHHHhHHHHhcCc
Confidence 4578999999999999999999999999999999999997776 23333333322221 1112222222 22111
Q ss_pred HHhhhhCCCCCCCCCceEEEEecCCC------CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeC
Q 017631 113 ETDRVTGKSKQISPVPIHLSIYSPNV------VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPA 186 (368)
Q Consensus 113 ~~~~~~~~~~~~s~~~i~i~i~~~~~------~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~ 186 (368)
..+ .-...-+.|+.|+. .++.+||.||++-.+.. ..++.++..++|++|+|+.+.
T Consensus 183 ~~~---------~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~----------tswid~~cldaDVfVlV~NaE 243 (749)
T KOG0448|consen 183 DKD---------LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL----------TSWIDSFCLDADVFVLVVNAE 243 (749)
T ss_pred ccc---------cCcceEEEEEecCccchhhhccceeccCCCCCCchhh----------hHHHHHHhhcCCeEEEEecCc
Confidence 111 11223344555543 38999999999875544 677889999999877766554
Q ss_pred CCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhh
Q 017631 187 NQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILE 230 (368)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~ 230 (368)
+ .+ +....++...+...+..++++.||||....+.++.+.+.
T Consensus 244 n-tl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 244 N-TL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred c-Hh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHHH
Confidence 3 33 334445777777666777788899999987666554443
No 33
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.60 E-value=1.6e-14 Score=121.91 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=23.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
|.|+++|++|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999875
No 34
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=1.8e-14 Score=140.30 Aligned_cols=127 Identities=23% Similarity=0.301 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..++|+|+|.+|+|||||+|+|+|.+..+++..+ +|+.....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~------------------------------------- 214 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDT------------------------------------- 214 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEE-------------------------------------
Confidence 4688999999999999999999998754443322 22211111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+. .+...+.+|||||+....... +.........+.++++.+|++++|+ ++..+...++
T Consensus 215 -----------------~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilVi-D~~~~~~~~~ 273 (435)
T PRK00093 215 -----------------PFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLLVI-DATEGITEQD 273 (435)
T ss_pred -----------------EEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEEEE-eCCCCCCHHH
Confidence 111 233468999999997643321 1111111233456789999776655 4455554444
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..++..+...+.|+++|+||+|+.++
T Consensus 274 -~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 274 -LRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred -HHHHHHHHHcCCcEEEEEECccCCCH
Confidence 34666666678999999999999844
No 35
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.60 E-value=1.2e-14 Score=122.49 Aligned_cols=117 Identities=18% Similarity=0.272 Sum_probs=72.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
|.|+|+|++|+|||||+|+|++.++.......+|......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998875322111111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
.+....+....+++|||||... +..+...++..+|++++++.. +... ......
T Consensus 41 ------------~~~~~~~~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~il~v~d~-~~~~-~~~~~~ 93 (168)
T cd01887 41 ------------EVPAEVLKIPGITFIDTPGHEA-------------FTNMRARGASLTDIAILVVAA-DDGV-MPQTIE 93 (168)
T ss_pred ------------EEecccCCcceEEEEeCCCcHH-------------HHHHHHHHHhhcCEEEEEEEC-CCCc-cHHHHH
Confidence 0001102345799999999743 134456677899977766554 3322 223333
Q ss_pred HHHhhCCCCCceEEeeccCcccCC
Q 017631 198 LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+..+...+.|+++|+||+|+...
T Consensus 94 ~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 94 AIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHcCCCEEEEEEceecccc
Confidence 334444467899999999998743
No 36
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.59 E-value=2.8e-14 Score=120.46 Aligned_cols=127 Identities=21% Similarity=0.290 Sum_probs=76.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.++|+++|.+|+|||||+|+|++....+.+..+.+.....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSI---------------------------------------- 41 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCce----------------------------------------
Confidence 4789999999999999999999987533332221111100
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
...+. ....++.+|||||+...... ..............++..+|.++++++ +...... ...
T Consensus 42 -------------~~~~~-~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~d-~~~~~~~-~~~ 103 (174)
T cd01895 42 -------------DVPFE-YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVID-ATEGITE-QDL 103 (174)
T ss_pred -------------eeEEE-ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEEe-CCCCcch-hHH
Confidence 00011 12346889999999764321 111111111223456789997776654 4443333 333
Q ss_pred HHHHhhCCCCCceEEeeccCcccCC
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+...+.|+++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCc
Confidence 4555555557899999999999865
No 37
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=9.6e-15 Score=141.09 Aligned_cols=181 Identities=20% Similarity=0.195 Sum_probs=98.2
Q ss_pred hccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcc
Q 017631 21 LGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKF 100 (368)
Q Consensus 21 l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (368)
.+..|+...+---.+.++.|++||.+|||||||||+|++.+.-..+...+|..|..-.
T Consensus 143 ~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv---------------------- 200 (500)
T PRK12296 143 LGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV---------------------- 200 (500)
T ss_pred CCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE----------------------
Confidence 3344433333333446788999999999999999999997631111122333332111
Q ss_pred cChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEE
Q 017631 101 TDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLI 180 (368)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 180 (368)
+. .....++|+||||++.....+ ..+ .....+++.++|++|
T Consensus 201 --------------------------------v~-~~~~~f~laDtPGliegas~g--~gL----g~~fLrhieradvLv 241 (500)
T PRK12296 201 --------------------------------VQ-AGDTRFTVADVPGLIPGASEG--KGL----GLDFLRHIERCAVLV 241 (500)
T ss_pred --------------------------------EE-ECCeEEEEEECCCCccccchh--hHH----HHHHHHHHHhcCEEE
Confidence 11 122468999999998644321 111 222355678899877
Q ss_pred EEEeeCCC-----cccchH-HHHHHHhh-----------CCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEE
Q 017631 181 LAITPANQ-----DLATSD-AVKLSREV-----------DPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243 (368)
Q Consensus 181 l~v~~~~~-----~~~~~~-~~~l~~~~-----------~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v 243 (368)
+||+.+.. .+...+ +...+..+ ....+|.|+|+||+|+.+... ..+.+..........++.+
T Consensus 242 ~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf~I 320 (500)
T PRK12296 242 HVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVFEV 320 (500)
T ss_pred EEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEEEE
Confidence 76655431 111111 11111222 224689999999999974322 2222211111113345667
Q ss_pred EeCCccccccCccHHHHHHH
Q 017631 244 VNRSQADINKNVDMIAARRR 263 (368)
Q Consensus 244 ~~~s~~~~~~~~~~~~~~~~ 263 (368)
+..+..++..+...+.....
T Consensus 321 SA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 321 SAASREGLRELSFALAELVE 340 (500)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 77666666666555554443
No 38
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=2.5e-14 Score=136.51 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=91.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-++.|++||.+|||||||||+|++.+.--.....+|..|..-.
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~------------------------------------- 199 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV------------------------------------- 199 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE-------------------------------------
Confidence 3568999999999999999999997621011112333331111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc--ccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD--LATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~--~~~~ 193 (368)
+...+...++|+||||+......+ ..+ .....++++++++++++++.++.+ -...
T Consensus 200 -----------------v~~~~~~~~~laD~PGliega~~~--~gL----g~~fLrhier~~llI~VID~s~~~~~dp~e 256 (424)
T PRK12297 200 -----------------VETDDGRSFVMADIPGLIEGASEG--VGL----GHQFLRHIERTRVIVHVIDMSGSEGRDPIE 256 (424)
T ss_pred -----------------EEEeCCceEEEEECCCCccccccc--chH----HHHHHHHHhhCCEEEEEEeCCccccCChHH
Confidence 112224579999999998744331 111 222345567799887777654321 1111
Q ss_pred HHHHH---HHhhCC--CCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHH
Q 017631 194 DAVKL---SREVDP--TGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRR 263 (368)
Q Consensus 194 ~~~~l---~~~~~~--~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~ 263 (368)
....+ +....+ ..+|.++|+||+|+......+..+.+. +...++.++..+..+++.+...+.....
T Consensus 257 ~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~----l~~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 257 DYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEK----LGPKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred HHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHH----hCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 21222 233332 468999999999974332222233221 1134566666666666666555554443
No 39
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.58 E-value=1.6e-14 Score=134.40 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.-++.|++||.+|||||||+|+|++.+.-......+|..|+.-.
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------ 198 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------ 198 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE------------------------------------
Confidence 35688999999999999999999987631111123444442211
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc--cc
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL--AT 192 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~--~~ 192 (368)
+...+...++|+||||+....... ..+ .....+++++++.+++|++....+. ..
T Consensus 199 ------------------v~~~~~~~~~i~D~PGli~~a~~~--~gL----g~~flrhierad~ll~VvD~s~~~~~~~~ 254 (329)
T TIGR02729 199 ------------------VRVDDGRSFVIADIPGLIEGASEG--AGL----GHRFLKHIERTRVLLHLIDISPLDGRDPI 254 (329)
T ss_pred ------------------EEeCCceEEEEEeCCCcccCCccc--ccH----HHHHHHHHHhhCEEEEEEcCccccccCHH
Confidence 112223578999999998654331 111 2334556778997776665443211 11
Q ss_pred hHHHHHH---HhhCC--CCCceEEeeccCcccCC
Q 017631 193 SDAVKLS---REVDP--TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 ~~~~~l~---~~~~~--~~~~~i~VltK~D~~~~ 221 (368)
+....+. ..+.+ ..+|.++|+||+|+..+
T Consensus 255 e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 255 EDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 1111122 22222 36899999999999755
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=3.7e-14 Score=137.89 Aligned_cols=125 Identities=21% Similarity=0.302 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..++|+++|.+|+|||||+|+|+|.+...++..+ +|+.+....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~------------------------------------ 214 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIP------------------------------------ 214 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEE------------------------------------
Confidence 4578999999999999999999998753333221 222221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+.. +...+++|||||+.+.... .+.+.......+..+++.+|++++|++ +......++
T Consensus 215 ------------------~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV~D-~~~~~~~~~ 272 (429)
T TIGR03594 215 ------------------FER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLVLD-ATEGITEQD 272 (429)
T ss_pred ------------------EEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEEEE-CCCCccHHH
Confidence 111 2236899999999764432 111111112334568899997776654 444444444
Q ss_pred HHHHHHhhCCCCCceEEeeccCccc
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.+++..+...+.|+++|+||+|+.
T Consensus 273 -~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 273 -LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred -HHHHHHHHHcCCcEEEEEECcccC
Confidence 346666666689999999999998
No 41
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=3.9e-14 Score=138.81 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=94.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..|.|+|||.+|+|||||+|+|+|..+..++..+ +|+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~------------------------------------------ 74 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTR------------------------------------------ 74 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCE------------------------------------------
Confidence 5699999999999999999999997642222111 111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+.+...+. .....+.||||||+.... ..+.+.+...+..++..+|++++|++.. ......
T Consensus 75 ------------d~~~~~~~-~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~il~VvD~~-~~~s~~- 134 (472)
T PRK03003 75 ------------DRVSYDAE-WNGRRFTVVDTGGWEPDA-----KGLQASVAEQAEVAMRTADAVLFVVDAT-VGATAT- 134 (472)
T ss_pred ------------eeEEEEEE-ECCcEEEEEeCCCcCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEECC-CCCCHH-
Confidence 11111111 123468899999986321 2245566777888999999777666543 332222
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCC-eEEEEeCCccccccCccHHHH
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHP-WVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~s~~~~~~~~~~~~~ 260 (368)
...++..+...+.|+++|+||+|+.....+..... .++++ .+.+++..+.+++++++.+..
T Consensus 135 ~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~-----~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 135 DEAVARVLRRSGKPVILAANKVDDERGEADAAALW-----SLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred HHHHHHHHHHcCCCEEEEEECccCCccchhhHHHH-----hcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 23355555566899999999999864322222221 12222 245666666665555544443
No 42
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.57 E-value=3.2e-14 Score=123.20 Aligned_cols=124 Identities=24% Similarity=0.356 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccC-cc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGS-GI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~-~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
.+|.|+++|.+|+|||||+|+|++.++.+... .+ +|+.+ .
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~---~----------------------------------- 64 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI---N----------------------------------- 64 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---E-----------------------------------
Confidence 68999999999999999999999976322211 11 11110 0
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCC---eEEEEEeeCCCcc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPN---CLILAITPANQDL 190 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~iil~v~~~~~~~ 190 (368)
.... ..++.||||||+..... +....+.+..+...|+..++ .++ +|.++....
T Consensus 65 -------------------~~~~-~~~l~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~d~~~~~ 120 (196)
T PRK00454 65 -------------------FFEV-NDKLRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLRTRENLKGVV-LLIDSRHPL 120 (196)
T ss_pred -------------------EEec-CCeEEEeCCCCCCCcCC---CchHHHHHHHHHHHHHHhCccceEEE-EEEecCCCC
Confidence 1111 24799999999765322 22234556677777877654 344 334444333
Q ss_pred cchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 191 ATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
...+ ..+.+.+...+.++++|+||+|+.+.+
T Consensus 121 ~~~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 121 KELD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred CHHH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 2222 234444555678899999999998653
No 43
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.57 E-value=3.8e-14 Score=121.12 Aligned_cols=123 Identities=24% Similarity=0.334 Sum_probs=78.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccc-cCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPR-GSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~-~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
..|.|+|+|.+|+|||||+|+|.+..+.+. +..+ +|..+ .+
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~---~~---------------------------------- 59 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI---NF---------------------------------- 59 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE---EE----------------------------------
Confidence 578999999999999999999999763221 1111 11111 00
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcC---CCeEEEEEeeCCCcc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEK---PNCLILAITPANQDL 190 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iil~v~~~~~~~ 190 (368)
...+ .++.+|||||+..... +......+..+...|++. ++++++++ +++.+.
T Consensus 60 -------------------~~~~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vv-d~~~~~ 114 (179)
T TIGR03598 60 -------------------FEVN--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLM-DIRHPL 114 (179)
T ss_pred -------------------EEeC--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEe-cCCCCC
Confidence 0011 2689999999866432 222345566666777764 46666555 445444
Q ss_pred cchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 191 ATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..... .+...+...+.|+++|+||+|+.+.
T Consensus 115 ~~~~~-~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 115 KELDL-EMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred CHHHH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence 44433 3555666678999999999999854
No 44
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=2e-14 Score=119.53 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=50.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
..+.+|||||+..... .....+...+..++..+|.++++++. ........ ..+.+.+...+.|+++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~-~~~~~~~~-~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVDG-REGLTPAD-EEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEec-cccCCccH-HHHHHHHHhcCCCEEEEEECccc
Confidence 4789999999976432 13334455566778899977766554 33322222 23445555557999999999999
Q ss_pred cCCc
Q 017631 219 MDKG 222 (368)
Q Consensus 219 ~~~~ 222 (368)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 8654
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=4.3e-14 Score=138.56 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccC-cccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGS-GIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..++|+++|.+|+|||||+|+|+|..+..++. ..+|+.+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~------------------------------------ 253 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSL------------------------------------ 253 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEE------------------------------------
Confidence 46899999999999999999999987532222 12222221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHH-HHHhhcCCCeEEEEEeeCCCcccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETM-VRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
+.. +...+.||||||+........ ..+.+..+ +..+++++|++++|++. ......+
T Consensus 254 ------------------~~~-~~~~~~l~DTaG~~~~~~~~~---~~e~~~~~~~~~~i~~ad~vilV~Da-~~~~s~~ 310 (472)
T PRK03003 254 ------------------IEL-GGKTWRFVDTAGLRRRVKQAS---GHEYYASLRTHAAIEAAEVAVVLIDA-SEPISEQ 310 (472)
T ss_pred ------------------EEE-CCEEEEEEECCCccccccccc---hHHHHHHHHHHHHHhcCCEEEEEEeC-CCCCCHH
Confidence 111 233578999999865322111 12222222 34578999977766654 4444343
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+ ..++..+...+.|+++|+||+|+..+
T Consensus 311 ~-~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 311 D-QRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred H-HHHHHHHHHcCCCEEEEEECcccCCh
Confidence 3 34566666678999999999999854
No 46
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.56 E-value=5.2e-14 Score=118.36 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=85.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+++|++.++.+.....++......
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------------- 43 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATR--------------------------------------- 43 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEE---------------------------------------
Confidence 46899999999999999999999876322211111100000
Q ss_pred hhCCCCCCCCCceEEEEecCC-CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH-
Q 017631 117 VTGKSKQISPVPIHLSIYSPN-VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD- 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~-~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~- 194 (368)
.+...+ ...+.++||||... +..+...+++.++++|++++..+. ..-..
T Consensus 44 ---------------~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~ 94 (165)
T cd01868 44 ---------------SIQIDGKTIKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKK-QTFENV 94 (165)
T ss_pred ---------------EEEECCEEEEEEEEeCCChHH-------------HHHHHHHHHCCCCEEEEEEECcCH-HHHHHH
Confidence 011111 23688999999632 255667888999987776655432 11222
Q ss_pred --HHHHHHhhCCCCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccC
Q 017631 195 --AVKLSREVDPTGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKN 254 (368)
Q Consensus 195 --~~~l~~~~~~~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~ 254 (368)
+...+....+.+.|+++|.||+|+..... +...+.. ....+++.+...++.+++..
T Consensus 95 ~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 95 ERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH----HcCCEEEEEECCCCCCHHHH
Confidence 22233333444689999999999875322 1122221 12346777777766554433
No 47
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.56 E-value=1.4e-13 Score=114.31 Aligned_cols=121 Identities=26% Similarity=0.312 Sum_probs=73.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccc-cccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVT-RRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..|+++|++|+|||||+|+|++......+..+.+ ..+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVI----------------------------------------- 40 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceE-----------------------------------------
Confidence 3699999999999999999999875222221111 1110
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
...+. .....++++||||+.+.... ........+..++.++|+++++++. ....... ..
T Consensus 41 -------------~~~~~-~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~-~~~~~~~-~~ 99 (157)
T cd04164 41 -------------EESID-IGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVIDA-SRGLDEE-DL 99 (157)
T ss_pred -------------EEEEE-eCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEEEC-CCCCCHH-HH
Confidence 00111 12347899999998764321 1111223455677899977765544 4322222 23
Q ss_pred HHHHhhCCCCCceEEeeccCcccCCc
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.+... ..+.|+++|+||+|+.+..
T Consensus 100 ~~~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 100 EILEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHHHh--hcCCCEEEEEEchhcCCcc
Confidence 33333 4579999999999998654
No 48
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.55 E-value=6.5e-14 Score=136.19 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=81.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.|++||++|+|||||+|+|+|.+...++.. .+|+...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~------------------------------------------ 38 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRK------------------------------------------ 38 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCce------------------------------------------
Confidence 489999999999999999999774222221 1222221
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
...+.. ....+.||||||+... ...+.+.+...+..+++.+|++++++ ++.......+ ..
T Consensus 39 ------------~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~vv-D~~~~~~~~d-~~ 98 (429)
T TIGR03594 39 ------------YGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFVV-DGREGLTPED-EE 98 (429)
T ss_pred ------------EEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEEE-eCCCCCCHHH-HH
Confidence 111211 2346899999998542 23356677888889999999776655 4444333333 33
Q ss_pred HHHhhCCCCCceEEeeccCcccCCcc
Q 017631 198 LSREVDPTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK~D~~~~~~ 223 (368)
+++.+...+.|+++|+||+|......
T Consensus 99 i~~~l~~~~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 99 IAKWLRKSGKPVILVANKIDGKKEDA 124 (429)
T ss_pred HHHHHHHhCCCEEEEEECccCCcccc
Confidence 55556566899999999999986543
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.54 E-value=7.8e-14 Score=117.84 Aligned_cols=152 Identities=13% Similarity=0.151 Sum_probs=85.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+.+|+|||++|+|||||+|++++.++-+......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~--------------------------------------- 44 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--------------------------------------- 44 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEE---------------------------------------
Confidence 46899999999999999999999876333221111111000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.+.+. .....+.++||||.. .+..+...+++.+|+++++++.. ....-+...
T Consensus 45 -------------~~~~~-~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~il~v~d~~-~~~s~~~~~ 96 (168)
T cd01866 45 -------------MITID-GKQIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDIT-RRETFNHLT 96 (168)
T ss_pred -------------EEEEC-CEEEEEEEEECCCcH-------------HHHHHHHHHhccCCEEEEEEECC-CHHHHHHHH
Confidence 01111 112368899999952 23566788999999887766543 322222333
Q ss_pred HHHHhh---CCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCc
Q 017631 197 KLSREV---DPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNV 255 (368)
Q Consensus 197 ~l~~~~---~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~ 255 (368)
.++..+ ...+.|+++|.||+|+..+.....+.........+..++.+...+..++.+.+
T Consensus 97 ~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 97 SWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 333322 22468899999999998432211111111111223456666666655554433
No 50
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.54 E-value=9.1e-14 Score=117.05 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=58.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||... ...+...+++++|+++++++..+. ..-. .+...+....+...|+++|.||
T Consensus 50 ~~~~l~Dt~g~~~-------------~~~~~~~~~~~~~~~l~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 50 VKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNE-ESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred EEEEEEECCChHH-------------HHHHHHHHccCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 3688999999643 245667889999988777654432 1111 2232333334456789999999
Q ss_pred CcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCcc
Q 017631 216 LDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVD 256 (368)
Q Consensus 216 ~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~ 256 (368)
+|+.+......+........++.+++.+...++.++.+++.
T Consensus 116 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 116 CDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred cccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99975432111111100112233466666655555444333
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=1.1e-13 Score=134.77 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=91.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.|.|++||++|+|||||+|+|+|.+...++.. .+|+..
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~----------------------------------------- 39 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR----------------------------------------- 39 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc-----------------------------------------
Confidence 37899999999999999999999874222221 112111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
..-.+.. ....+.+|||||+.... .+..+.+...+..++..+|++++|++. .......+
T Consensus 40 -------------~~~~~~~-~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvd~-~~~~~~~~- 98 (435)
T PRK00093 40 -------------IYGEAEW-LGREFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADVILFVVDG-RAGLTPAD- 98 (435)
T ss_pred -------------eEEEEEE-CCcEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEEC-CCCCCHHH-
Confidence 1111111 22578999999997621 124555677778889999977766654 43333322
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCC-eEEEEeCCccccccCcc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHP-WVGIVNRSQADINKNVD 256 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~s~~~~~~~~~ 256 (368)
..++..+...+.|+++|+||+|..+......++. .++.+ ++.++...+.++..+++
T Consensus 99 ~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 99 EEIAKILRKSNKPVILVVNKVDGPDEEADAYEFY-----SLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred HHHHHHHHHcCCcEEEEEECccCccchhhHHHHH-----hcCCCCCEEEEeeCCCCHHHHHH
Confidence 2344455555899999999999764322222221 22222 45555555554444333
No 52
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.53 E-value=7.3e-14 Score=116.88 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=69.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+++|++|+|||||+|+|++.++.+......+......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 589999999999999999999886332111111111000
Q ss_pred CCCCCCCCCceEEEEecCC-CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHH
Q 017631 119 GKSKQISPVPIHLSIYSPN-VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDA 195 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~-~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~ 195 (368)
.+..++ ...+.++||||... ...+...+++.+|++++|++..+.. +.. ..+
T Consensus 41 -------------~~~~~~~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 94 (161)
T cd01861 41 -------------TMYLEDKTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKW 94 (161)
T ss_pred -------------EEEECCEEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 011111 13588999999532 2556788899999777665443211 111 112
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
...+....+.+.|+++|+||+|+...
T Consensus 95 ~~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 95 IDDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred HHHHHHhCCCCCEEEEEEEChhcccc
Confidence 22222222335899999999999643
No 53
>PRK04213 GTP-binding protein; Provisional
Probab=99.53 E-value=1.4e-13 Score=119.89 Aligned_cols=125 Identities=23% Similarity=0.356 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+.|+++|.+|+|||||+|+|.|..+ +.+..+ +|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 468999999999999999999999874 333221 11111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc----CCCeEEEEEeeCCC--
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE----KPNCLILAITPANQ-- 188 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~iil~v~~~~~-- 188 (368)
..+.+ .++.+|||||+...... ++...+.+..++..|+. .++.+++++++...
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 01111 16899999997543221 22234555666666654 34655555544221
Q ss_pred ---ccc----chHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 189 ---DLA----TSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 189 ---~~~----~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.+. .+....+...+...+.|+++|+||+|+....
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence 110 0111223444444578999999999997543
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=1.5e-13 Score=118.69 Aligned_cols=110 Identities=12% Similarity=0.193 Sum_probs=67.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc---hHHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT---SDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~---~~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.||||||... +..+...+++.+|++|+|++..+.. .- ..+...+....+.+.|+++|+||
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~NK 115 (191)
T cd04112 50 VKLQIWDTAGQER-------------FRSVTHAYYRDAHALLLLYDITNKA-SFDNIRAWLTEIKEYAQEDVVIMLLGNK 115 (191)
T ss_pred EEEEEEeCCCcHH-------------HHHhhHHHccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEEc
Confidence 3688999999532 2455677899999877666543321 11 12233344445557899999999
Q ss_pred CcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHHHHh
Q 017631 216 LDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRREHE 266 (368)
Q Consensus 216 ~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ 266 (368)
+|+..+.. +...+. .....+|+.+...++.++..++..+.+...+..
T Consensus 116 ~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 116 ADMSGERVVKREDGERLA----KEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred ccchhccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99974321 112221 123346788888777777777776666555543
No 55
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.52 E-value=1.4e-13 Score=115.35 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=41.7
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--HHHHHHHhhCCCCCceEEeecc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
...+.+|||||... +......++..+|++++|++. ..++..+ .....++... ..|+++|+||
T Consensus 50 ~~~~~~~DtpG~~~-------------~~~~~~~~~~~ad~ii~V~d~-~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHEK-------------FIKNMLAGAGGIDLVLLVVAA-DEGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChHH-------------HHHHHHhhhhcCCEEEEEEEC-CCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 34789999999732 133455678899977766554 3322222 2222222221 2489999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+...
T Consensus 114 ~Dl~~~ 119 (164)
T cd04171 114 ADLVDE 119 (164)
T ss_pred ccccCH
Confidence 999754
No 56
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=3.2e-13 Score=120.66 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.-.+|+|+|.+|+|||||+|+|+|....+++.. .+|.......
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 457899999999999999999999987555432 2332221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCC-ccc
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQ-DLA 191 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~-~~~ 191 (368)
. ..+...+++|||||+.+.... ....+.+...+..|+. ..|+ |++|...+. ...
T Consensus 74 ------------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~idv-IL~V~rlD~~r~~ 130 (249)
T cd01853 74 ------------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPDV-VLYVDRLDMYRRD 130 (249)
T ss_pred ------------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCCE-EEEEEcCCCCCCC
Confidence 0 123357899999999875321 1123344455667775 5674 455554332 222
Q ss_pred chHHHHHHHhhCC-----CCCceEEeeccCcccCCc
Q 017631 192 TSDAVKLSREVDP-----TGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 192 ~~~~~~l~~~~~~-----~~~~~i~VltK~D~~~~~ 222 (368)
.. ...+++.+.. .-.++++|+||+|..++.
T Consensus 131 ~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 131 YL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 22 2234433322 126899999999998664
No 57
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.52 E-value=8.2e-14 Score=118.24 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=45.0
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-----ccchH---HHHHHHhhCC-----
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-----LATSD---AVKLSREVDP----- 204 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-----~~~~~---~~~l~~~~~~----- 204 (368)
..++.++||||+....... +.+ ......++..+|+++++++..... ..... +...+.....
T Consensus 43 ~~~~~i~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG--RGL----GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC--CCc----cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4578999999986533221 111 112345677899777776654431 11111 1111111111
Q ss_pred --CCCceEEeeccCcccCCcc
Q 017631 205 --TGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 205 --~~~~~i~VltK~D~~~~~~ 223 (368)
.+.|+++|+||+|+.....
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred HHhhCCeEEEEEchhcCchhH
Confidence 3689999999999986543
No 58
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.52 E-value=1.5e-13 Score=119.23 Aligned_cols=73 Identities=29% Similarity=0.374 Sum_probs=44.5
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..++++++||||+...... ..+.+. ...+..+|.+++ +.+ .++...+ ..+++.+...+.|+++|+||+
T Consensus 50 ~~~~l~l~DtpG~~~~~~~-----~~~~l~---~~~~~~~d~~l~-v~~--~~~~~~d-~~~~~~l~~~~~~~ilV~nK~ 117 (197)
T cd04104 50 KFPNVTLWDLPGIGSTAFP-----PDDYLE---EMKFSEYDFFII-ISS--TRFSSND-VKLAKAIQCMGKKFYFVRTKV 117 (197)
T ss_pred CCCCceEEeCCCCCcccCC-----HHHHHH---HhCccCcCEEEE-EeC--CCCCHHH-HHHHHHHHHhCCCEEEEEecc
Confidence 3458999999999763322 111111 122567886554 433 3343333 335556666689999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+..+
T Consensus 118 D~~~~ 122 (197)
T cd04104 118 DRDLS 122 (197)
T ss_pred cchhh
Confidence 99744
No 59
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.52 E-value=2.1e-13 Score=115.00 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+++|++|+|||||++++.+.++-+. ..++........
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~~~~-------------------------------------- 43 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDFKIR-------------------------------------- 43 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceEEEE--------------------------------------
Confidence 47899999999999999999999876221 111111110000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH--
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD-- 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~-- 194 (368)
.+.+. .....+.++||||... +..+...+++++|+++++++..+ ...-..
T Consensus 44 -------------~~~~~-~~~~~l~l~D~~g~~~-------------~~~~~~~~~~~ad~~i~v~d~~~-~~s~~~~~ 95 (167)
T cd01867 44 -------------TIELD-GKKIKLQIWDTAGQER-------------FRTITTAYYRGAMGIILVYDITD-EKSFENIR 95 (167)
T ss_pred -------------EEEEC-CEEEEEEEEeCCchHH-------------HHHHHHHHhCCCCEEEEEEECcC-HHHHHhHH
Confidence 01111 1224688999999632 24456778899998877665432 222122
Q ss_pred -HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCc
Q 017631 195 -AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNV 255 (368)
Q Consensus 195 -~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~ 255 (368)
+...+....+.+.|+++|.||+|+.+......+...........+++.+...++.++.+.+
T Consensus 96 ~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 96 NWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAF 157 (167)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 2222333344568999999999998532211111111111233456667666655544433
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.51 E-value=1.8e-13 Score=114.86 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH----HHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK----LSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~----l~~~~~~~~~~~i~Vlt 214 (368)
..+.++||||..+ +..+...|++.+|+++++++..+. ..-..... +.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQEE-------------FSAMREQYMRTGEGFLLVFSVTDR-GSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 3688999999743 245677889999988877654332 11111111 22222345689999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+...
T Consensus 116 K~Dl~~~ 122 (164)
T cd04145 116 KADLEHQ 122 (164)
T ss_pred Ccccccc
Confidence 9999754
No 61
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.51 E-value=2.4e-13 Score=114.59 Aligned_cols=146 Identities=12% Similarity=0.191 Sum_probs=84.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-+|+++|++|+|||||++++.+..+.+... ++........
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~~~~~--------------------------------------- 42 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFGTR--------------------------------------- 42 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-cccceeEEEE---------------------------------------
Confidence 469999999999999999999887632211 1111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---H
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---D 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~ 194 (368)
.+.+. .....+.++||||... +..+...|++++|++|+|++..+. ..-+ .
T Consensus 43 ------------~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~ 95 (166)
T cd04122 43 ------------IIEVN-GQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRR-STYNHLSS 95 (166)
T ss_pred ------------EEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCH-HHHHHHHH
Confidence 01111 1123678999999632 255678889999988877765442 1112 2
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKN 254 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~ 254 (368)
+............|+++|.||+|+..... +.....+ .....++.+...+..++.+.
T Consensus 96 ~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 96 WLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD----ENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred HHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHH----HcCCEEEEEECCCCCCHHHH
Confidence 22222333344678999999999975432 1222221 12345667777666654443
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.51 E-value=2.7e-13 Score=117.68 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=85.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+|+|++|+|||||++++++.++ +....+++...+...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~---------------------------------------- 40 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRP---------------------------------------- 40 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCcccccccee----------------------------------------
Confidence 689999999999999999999875 322222221110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL 198 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l 198 (368)
.+.+ ......+.|+||||....... ....+......+++.+|++|+|++..+. .+-.....+
T Consensus 41 -----------~i~~-~~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~-~S~~~~~~~ 102 (198)
T cd04142 41 -----------AVVL-SGRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSP-DSFHYVKLL 102 (198)
T ss_pred -----------EEEE-CCEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCH-HHHHHHHHH
Confidence 0001 111246789999998643211 1122233455678999988777655432 111112222
Q ss_pred HH---hh---CCCCCceEEeeccCcccCCcchHHHhhhCC-CccCCCCeEEEEeCCccccccCc
Q 017631 199 SR---EV---DPTGERTFGVLTKLDLMDKGTNALDILEGR-SYPLQHPWVGIVNRSQADINKNV 255 (368)
Q Consensus 199 ~~---~~---~~~~~~~i~VltK~D~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~s~~~~~~~~ 255 (368)
.+ .. ...+.|+++|.||+|+........+..+.. ......+|+.++..++.++..++
T Consensus 103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHH
Confidence 22 22 135689999999999965321111111100 11124567777777666544433
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.51 E-value=1.7e-13 Score=114.99 Aligned_cols=145 Identities=14% Similarity=0.216 Sum_probs=81.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+|+|++|+|||||+|++.+..+ +....+++......
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~----------------------------------------- 39 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRK----------------------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEE-----------------------------------------
Confidence 689999999999999999998875 22211111100000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---H
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---A 195 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~ 195 (368)
.+ ........+.++||||..+. ..+...+++.+|.++++++..+. ..-.. +
T Consensus 40 -----------~~-~~~~~~~~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~ 93 (164)
T smart00173 40 -----------QI-EIDGEVCLLDILDTAGQEEF-------------SAMRDQYMRTGEGFLLVYSITDR-QSFEEIKKF 93 (164)
T ss_pred -----------EE-EECCEEEEEEEEECCCcccc-------------hHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHH
Confidence 00 11112346789999997441 44566788899987766654332 11111 1
Q ss_pred HH-HHHhhCCCCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCc
Q 017631 196 VK-LSREVDPTGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNV 255 (368)
Q Consensus 196 ~~-l~~~~~~~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~ 255 (368)
.. +.+.......|+++|.||+|+.+... ....+.+ ....+++.+...+..++.+.+
T Consensus 94 ~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 94 REQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR----QWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH----HcCCEEEEeecCCCCCHHHHH
Confidence 11 22222334679999999999975322 1122221 122456666666655544433
No 64
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.51 E-value=2.9e-13 Score=112.11 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=50.9
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..+++++||||+....... ......+..++..+|.+++++.... ....... .+.......+.|+++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d~il~v~~~~~-~~~~~~~-~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG------REREELARRVLERADLILFVVDADL-RADEEEE-KLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccch------hhHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHH-HHHHHHHhcCCeEEEEEEccc
Confidence 5689999999998754331 1112456778899997776655443 2222222 234444556799999999999
Q ss_pred ccCCcc
Q 017631 218 LMDKGT 223 (368)
Q Consensus 218 ~~~~~~ 223 (368)
+..+..
T Consensus 116 ~~~~~~ 121 (163)
T cd00880 116 LLPEEE 121 (163)
T ss_pred cCChhh
Confidence 986543
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.51 E-value=1.8e-13 Score=114.61 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=83.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+|+|++|+|||||+++|++.++-+......+.....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 39 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGS------------------------------------------ 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEE------------------------------------------
Confidence 68999999999999999999887532221111100000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DA 195 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~ 195 (368)
..+.+. .....+.++||||... +..+...+++.+|+++++++..+. .... .+
T Consensus 40 ----------~~~~~~-~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~ 94 (161)
T cd04113 40 ----------KIIRVG-GKRVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITNR-TSFEALPTW 94 (161)
T ss_pred ----------EEEEEC-CEEEEEEEEECcchHH-------------HHHhHHHHhcCCCEEEEEEECCCH-HHHHHHHHH
Confidence 001111 1224688999999743 245667889999988877655442 1112 22
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCcccccc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINK 253 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~ 253 (368)
...++.....+.|+++|.||+|+........+............++.+...+..++..
T Consensus 95 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 95 LSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEE 152 (161)
T ss_pred HHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 2223334445689999999999975432111111111112224566666665554443
No 66
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.51 E-value=2.3e-13 Score=114.56 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=57.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||... +..+...+++.+|++|++++..+.. .-. .+...+......+.|.++|.||
T Consensus 51 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~l~~~~~~~~~~~~~~~~~iiv~nK 116 (166)
T cd01869 51 IKLQIWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNK 116 (166)
T ss_pred EEEEEEECCCcHh-------------HHHHHHHHhCcCCEEEEEEECcCHH-HHHhHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 3678999999532 2556678899999888777654321 111 1222233333346899999999
Q ss_pred CcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCc
Q 017631 216 LDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNV 255 (368)
Q Consensus 216 ~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~ 255 (368)
+|+........+...........+++.+....+.++.+.+
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 117 CDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred hhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence 9986543211111111111223456666666655544433
No 67
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.51 E-value=2.5e-13 Score=114.19 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=82.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+|+|++|+|||||+|+|++.++.+ ...++..... .
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~--~---------------------------------------- 38 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDY--G---------------------------------------- 38 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeE--E----------------------------------------
Confidence 68999999999999999999988622 1111110000 0
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc--cchHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL--ATSDAV 196 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~--~~~~~~ 196 (368)
...+.+. .....+.++||||... ...+...+++.+|++|+|++..+... ....+.
T Consensus 39 ---------~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 95 (168)
T cd04119 39 ---------VKKVSVR-NKEVRVNFFDLSGHPE-------------YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWL 95 (168)
T ss_pred ---------EEEEEEC-CeEEEEEEEECCccHH-------------HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHH
Confidence 0001111 1234788999999833 24556778899998887765443211 011222
Q ss_pred HHHHh-hCC----CCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCcc
Q 017631 197 KLSRE-VDP----TGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVD 256 (368)
Q Consensus 197 ~l~~~-~~~----~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~ 256 (368)
..+.. ..+ .+.|+++|.||+|+.++.. +...... .....++.+...+..++...+.
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE----SKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHH
Confidence 22222 222 4689999999999974321 1112221 1224566676666555444333
No 68
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=3.3e-13 Score=122.30 Aligned_cols=125 Identities=17% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
...+|+++|.+|+||||++|+|+|.++..++.. .+|..++...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~------------------------------------ 80 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS------------------------------------ 80 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE------------------------------------
Confidence 568999999999999999999999886433321 1222221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCC-ccc
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQ-DLA 191 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~-~~~ 191 (368)
...+...+.+|||||+.+.. ...+...+.++.|+. .+|+++ +|...+. ...
T Consensus 81 -------------------~~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ik~~l~~~g~DvVL-yV~rLD~~R~~ 134 (313)
T TIGR00991 81 -------------------RTRAGFTLNIIDTPGLIEGG------YINDQAVNIIKRFLLGKTIDVLL-YVDRLDAYRVD 134 (313)
T ss_pred -------------------EEECCeEEEEEECCCCCchH------HHHHHHHHHHHHHhhcCCCCEEE-EEeccCcccCC
Confidence 01133579999999998742 233334555666654 688655 4443221 222
Q ss_pred c--hHHHHHHHhhC--CCCCceEEeeccCcccCCc
Q 017631 192 T--SDAVKLSREVD--PTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 192 ~--~~~~~l~~~~~--~~~~~~i~VltK~D~~~~~ 222 (368)
. ....+.+..+- ..-.++|+|+|++|..+++
T Consensus 135 ~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 135 TLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 1 22333333331 2237899999999998653
No 69
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.50 E-value=2.2e-13 Score=114.23 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=44.5
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHh---hCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSRE---VDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~---~~~~~~~~i~VltK~ 216 (368)
.+.++|+||... +..+...++.++|++|++++..+ ....+....+... ....+.|+++|.||+
T Consensus 50 ~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQER-------------FRSITSSYYRGAVGALLVYDITN-RESFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCChHH-------------HHHHHHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 678999999632 24566788999998887775533 2222222222222 222478999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 116 D~~~~ 120 (164)
T smart00175 116 DLEDQ 120 (164)
T ss_pred hcccc
Confidence 98753
No 70
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.50 E-value=1.5e-13 Score=114.40 Aligned_cols=72 Identities=19% Similarity=0.350 Sum_probs=45.5
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.++.+|||||+......... ..+...++. .+|+++++++... . .....+...+...+.|+++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~~~~-------~~~~~~~~~~~~~d~vi~v~d~~~-~---~~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSED-------EKVARDFLLGEKPDLIVNVVDATN-L---ERNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCCChh-------HHHHHHHhcCCCCcEEEEEeeCCc-c---hhHHHHHHHHHHcCCCEEEEEehh
Confidence 47899999998764332110 234455664 8997777665433 1 112233444444579999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+.+.
T Consensus 112 Dl~~~ 116 (158)
T cd01879 112 DEAEK 116 (158)
T ss_pred hhccc
Confidence 99754
No 71
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.50 E-value=2.6e-13 Score=139.13 Aligned_cols=126 Identities=24% Similarity=0.270 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCcccc-CcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRG-SGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~-~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+.|+++|.+|+|||||+|+|++.++..++ ...+|+.+....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~------------------------------------ 492 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEI------------------------------------ 492 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeE------------------------------------
Confidence 4689999999999999999999998752222 222333221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHH-HHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIET-MVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
+ ..+...+.||||||+....... ...+.+.. .+..+++.+|++++|+ +++.....+
T Consensus 493 ------------------~-~~~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilVi-Dat~~~s~~ 549 (712)
T PRK09518 493 ------------------V-EIDGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLF-DASQPISEQ 549 (712)
T ss_pred ------------------E-EECCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEE-ECCCCCCHH
Confidence 1 1123468899999986533221 01122222 2456688999777655 444444444
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+ ..++..+...+.|+++|+||+|+.+.
T Consensus 550 ~-~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 550 D-LKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred H-HHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 4 34566665668999999999999854
No 72
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=1.5e-13 Score=120.44 Aligned_cols=126 Identities=25% Similarity=0.356 Sum_probs=74.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccC--cccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGS--GIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~--~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+|+++|.+||||||++|+|+|.+.++.+. ..||........
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~------------------------------------- 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG------------------------------------- 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-------------------------------------
Confidence 69999999999999999999999988864 345544422211
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH--
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD-- 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~-- 194 (368)
......+++|||||+.+.... ++...+.+...+......+|++++| .+.. .+...+
T Consensus 45 ------------------~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llV-i~~~-r~t~~~~~ 102 (212)
T PF04548_consen 45 ------------------EVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLV-IPLG-RFTEEDRE 102 (212)
T ss_dssp ------------------EETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEE-EETT-B-SHHHHH
T ss_pred ------------------eecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEE-EecC-cchHHHHH
Confidence 123357999999999775532 3334444444444445678976655 5544 444333
Q ss_pred HHHHHHhhCC--CCCceEEeeccCcccCCcc
Q 017631 195 AVKLSREVDP--TGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 195 ~~~l~~~~~~--~~~~~i~VltK~D~~~~~~ 223 (368)
.++.+..+-. .-+.+++|+|.+|...+..
T Consensus 103 ~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 103 VLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred HHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 3333333322 2368999999999987654
No 73
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.49 E-value=3e-13 Score=138.70 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=82.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+|.|+++|++|+|||||+|+|+|.+...++. .|.+.+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~-----~pGvT~------------------------------------- 311 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVED-----TPGVTR------------------------------------- 311 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecC-----CCCeeE-------------------------------------
Confidence 46889999999999999999999976422221 221111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+.+.... .+...++.+|||||+.... +.+...+...+..++..+|++++|++ +.......+
T Consensus 312 -----------d~~~~~~-~~~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD~iL~VvD-a~~~~~~~d- 372 (712)
T PRK09518 312 -----------DRVSYDA-EWAGTDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLADAVVFVVD-GQVGLTSTD- 372 (712)
T ss_pred -----------EEEEEEE-EECCEEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCCEEEEEEE-CCCCCCHHH-
Confidence 1111111 1223478999999986421 22555667778889999997766554 444433333
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..++..+...+.|+++|+||+|+...
T Consensus 373 ~~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 373 ERIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHHHHHHhcCCCEEEEEECcccccc
Confidence 23556666678999999999998754
No 74
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.49 E-value=3.2e-13 Score=113.67 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=46.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+.|+||||... +..+...+++.+|+++++++..+.. +.. ..++..+......+.|+++|.||+
T Consensus 52 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 118 (165)
T cd01864 52 VKLQIWDTAGQER-------------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKC 118 (165)
T ss_pred EEEEEEECCChHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 3688999999532 2556788899999888776554421 111 223333334444578899999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 119 Dl~~~ 123 (165)
T cd01864 119 DLEEQ 123 (165)
T ss_pred ccccc
Confidence 99754
No 75
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.49 E-value=3.2e-13 Score=113.18 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=82.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+++|.+|+|||||++++++..+ +.+..+.+......
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~----------------------------------------- 39 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK----------------------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEE-----------------------------------------
Confidence 689999999999999999998775 22222221111000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSDAV 196 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~~~ 196 (368)
..........+.++||||.... ..+...+++.+|+++++++..+.. +. ...+.
T Consensus 40 ------------~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T cd04139 40 ------------KVVLDGEDVQLNILDTAGQEDY-------------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFR 94 (164)
T ss_pred ------------EEEECCEEEEEEEEECCChhhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 0011112346889999997431 445667889999887776543211 00 11222
Q ss_pred H-HHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCc
Q 017631 197 K-LSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNV 255 (368)
Q Consensus 197 ~-l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~ 255 (368)
. +.+.......|+++|+||+|+..................+.+++.+......++.+..
T Consensus 95 ~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 95 EQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 2 2332234579999999999997622111111110111223456666666655544433
No 76
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.49 E-value=2.6e-13 Score=113.70 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=43.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH---HHhh-CCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL---SREV-DPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l---~~~~-~~~~~~~i~Vlt 214 (368)
..+.|+||||... +..+...|++++|++++|++..+.. .-.....+ +... ...+.|+++|.|
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (163)
T cd04136 49 CMLEILDTAGTEQ-------------FTAMRDLYIKNGQGFVLVYSITSQS-SFNDLQDLREQILRVKDTENVPMVLVGN 114 (163)
T ss_pred EEEEEEECCCccc-------------cchHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 3578999999743 1445677889999887766543321 11122222 2222 234689999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+...
T Consensus 115 K~Dl~~~ 121 (163)
T cd04136 115 KCDLEDE 121 (163)
T ss_pred Ccccccc
Confidence 9998753
No 77
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.49 E-value=3.8e-13 Score=112.39 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch-HHH-HHHHhhCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS-DAV-KLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~-~~~-~l~~~~~~~~~~~i~VltK~ 216 (368)
.+.++||||... +..+...|+..+|+++++++..+.. +... .+. .+.+.....+.|+++|.||+
T Consensus 50 ~~~i~Dt~G~~~-------------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCCcc-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 577899999633 2556778999999877766543321 1111 111 12222334578999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 117 Dl~~~ 121 (162)
T cd04138 117 DLAAR 121 (162)
T ss_pred ccccc
Confidence 99753
No 78
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.49 E-value=2.6e-13 Score=112.57 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=70.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+++|.+|+|||||+|+|.+..+.+. ....+......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~---------------------------------------- 39 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKS---------------------------------------- 39 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEE----------------------------------------
Confidence 3699999999999999999999886332 11111000000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD--- 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~--- 194 (368)
..+.+. .....+.++|+||... +..+...+++++|+++++++..... ....
T Consensus 40 -----------~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~ 93 (159)
T cd00154 40 -----------KTIEID-GKTVKLQIWDTAGQER-------------FRSITPSYYRGAHGAILVYDITNRE-SFENLDK 93 (159)
T ss_pred -----------EEEEEC-CEEEEEEEEecCChHH-------------HHHHHHHHhcCCCEEEEEEECCCHH-HHHHHHH
Confidence 000010 1224688999999732 2456788899999887766553321 1122
Q ss_pred HHHHHHhhCCCCCceEEeeccCccc
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
+...+........|+++|+||+|+.
T Consensus 94 ~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 94 WLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHhCCCCCcEEEEEEccccc
Confidence 2222223333468999999999997
No 79
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.48 E-value=5e-13 Score=112.03 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=69.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+|+|++|+|||||+|+|++.++.+.. .+.........
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~---------------------------------------- 41 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLTQ---------------------------------------- 41 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEE----------------------------------------
Confidence 6899999999999999999999863311 11111100000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAV 196 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~ 196 (368)
.+.+. .....+.++|+||... +......+++.+|++++|++..+.. +.. ..+.
T Consensus 42 -----------~v~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 96 (163)
T cd01860 42 -----------TVNLD-DTTVKFEIWDTAGQER-------------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWV 96 (163)
T ss_pred -----------EEEEC-CEEEEEEEEeCCchHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 00111 1223578999999532 2445567889999888776554321 111 1222
Q ss_pred HHHHhhCCCCCceEEeeccCcccC
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
..+........++++|.||+|+..
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 222233334578999999999874
No 80
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.48 E-value=3.4e-13 Score=113.28 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=44.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHH-HHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVK-LSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~-l~~~~~~~~~~~i~Vlt 214 (368)
..+.++||||... +..+...|++.+|+++++++..+. ..-.. +.. +.......+.|+++|.|
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTEQ-------------FTAMRDLYMKNGQGFVLVYSITAQ-STFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCccc-------------chhHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4678999999743 145667789999988877654332 11111 222 22222345689999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+...
T Consensus 115 K~Dl~~~ 121 (164)
T cd04175 115 KCDLEDE 121 (164)
T ss_pred CCcchhc
Confidence 9999753
No 81
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=1.4e-13 Score=120.50 Aligned_cols=122 Identities=27% Similarity=0.371 Sum_probs=81.7
Q ss_pred CCe-EEEECCCCCCHHHHHHHhhCCCCccccC-cccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 37 LPS-VAVVGGQSSGKSSVLESIVGRDFLPRGS-GIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 37 lp~-i~vvG~~saGKSSllnaL~g~~~~p~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
-|. |.++|.+|+|||||+|||.+...-|+.. +.||+-++...
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~------------------------------------ 81 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR------------------------------------ 81 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH------------------------------------
Confidence 355 5599999999999999999877666663 34554441111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC-Ccccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN-QDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~-~~~~~~ 193 (368)
.+.+...++|+||||+.++..+ -..++...+.|+...| ++|++.++. .+...+
T Consensus 82 -------------------~~~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d 135 (296)
T COG3596 82 -------------------LSYDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLD-LVLWLIKADDRALGTD 135 (296)
T ss_pred -------------------hhccccceEEecCCCcccchhh------hHHHHHHHHHHhhhcc-EEEEeccCCCccccCC
Confidence 1223368999999999875443 1335777899999999 455555544 344444
Q ss_pred HHHHHHHhhC--CCCCceEEeeccCcccCCc
Q 017631 194 DAVKLSREVD--PTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~~~~l~~~~~--~~~~~~i~VltK~D~~~~~ 222 (368)
.. +++.+. -.++|+++|+|.+|...+.
T Consensus 136 ~~--f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 136 ED--FLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred HH--HHHHHHHhccCceeEEEEehhhhhccc
Confidence 33 332222 2348999999999999774
No 82
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.48 E-value=5e-13 Score=112.99 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHH-HHHhhC---CCCCceEE
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVK-LSREVD---PTGERTFG 211 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~-l~~~~~---~~~~~~i~ 211 (368)
..+.++|+||... ...+...+++++|++|++++.... ..-.. +.. +..... +.+.|+++
T Consensus 49 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~il 114 (172)
T cd01862 49 VTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVV 114 (172)
T ss_pred EEEEEEeCCChHH-------------HHhHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEE
Confidence 3578999999632 245567889999988777654332 11111 111 223333 33689999
Q ss_pred eeccCcccC
Q 017631 212 VLTKLDLMD 220 (368)
Q Consensus 212 VltK~D~~~ 220 (368)
|+||+|+..
T Consensus 115 v~nK~Dl~~ 123 (172)
T cd01862 115 LGNKIDLEE 123 (172)
T ss_pred EEECccccc
Confidence 999999984
No 83
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.48 E-value=7.8e-13 Score=110.67 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=44.5
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHH-HHHh--hCCCCCceEE
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVK-LSRE--VDPTGERTFG 211 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~-l~~~--~~~~~~~~i~ 211 (368)
...+.++||||... +..+...|++++|++|++++.... .... .+.. +.+. +...+.|+++
T Consensus 44 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ii 109 (162)
T cd04157 44 NLSFTAFDMSGQGK-------------YRGLWEHYYKNIQGIIFVIDSSDR-LRLVVVKDELELLLNHPDIKHRRVPILF 109 (162)
T ss_pred CEEEEEEECCCCHh-------------hHHHHHHHHccCCEEEEEEeCCcH-HHHHHHHHHHHHHHcCcccccCCCCEEE
Confidence 34688999999743 245667889999988876655432 1111 1111 1111 1224689999
Q ss_pred eeccCcccCC
Q 017631 212 VLTKLDLMDK 221 (368)
Q Consensus 212 VltK~D~~~~ 221 (368)
|+||+|+...
T Consensus 110 v~NK~Dl~~~ 119 (162)
T cd04157 110 FANKMDLPDA 119 (162)
T ss_pred EEeCccccCC
Confidence 9999999754
No 84
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.6e-12 Score=119.48 Aligned_cols=143 Identities=23% Similarity=0.259 Sum_probs=87.6
Q ss_pred HHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCC
Q 017631 17 ACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLP 96 (368)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~ 96 (368)
.+..+...+....+ ..-++|+++|+||+|||||+|+|+..++ ..++..|
T Consensus 252 v~s~l~~~~~~e~l----q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~---------------------- 300 (531)
T KOG1191|consen 252 VLSHLNKADEIERL----QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP---------------------- 300 (531)
T ss_pred HHHHHHhhhhHHHh----hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC----------------------
Confidence 44444444433333 2459999999999999999999999987 4444443
Q ss_pred CCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCC
Q 017631 97 KKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKP 176 (368)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
+-+.|.++..+. ++..++.|+||.|+...... .+...-.+.+++.+..+
T Consensus 301 --------------------------GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA~k~~~~a 349 (531)
T KOG1191|consen 301 --------------------------GTTRDAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERARKRIERA 349 (531)
T ss_pred --------------------------CcchhhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHHHHHHhhc
Confidence 112233344344 56678999999999882222 12222245567788999
Q ss_pred CeEEEEEeeCCCcccchHH--HHHHHhhC---------CCCCceEEeeccCcccCCc
Q 017631 177 NCLILAITPANQDLATSDA--VKLSREVD---------PTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 177 d~iil~v~~~~~~~~~~~~--~~l~~~~~---------~~~~~~i~VltK~D~~~~~ 222 (368)
|+++++|++ ......++. .+.+.... ....|.++|.||.|+..+.
T Consensus 350 dvi~~vvda-~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~ 405 (531)
T KOG1191|consen 350 DVILLVVDA-EESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI 405 (531)
T ss_pred CEEEEEecc-cccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc
Confidence 966655544 322222221 22222221 1237889999999999773
No 85
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.47 E-value=2.1e-13 Score=126.76 Aligned_cols=133 Identities=28% Similarity=0.396 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCC-----ccccCcccccccEEEEEE
Q 017631 6 SLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDF-----LPRGSGIVTRRPLVLQLH 80 (368)
Q Consensus 6 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~-----~p~~~~~~t~~p~~~~~~ 80 (368)
++.+.+..+++++..+.. .--.|+|+|++|+|||||||||-|..- .|+|...+|..|+
T Consensus 16 ~~~~~~s~i~~~l~~~~~------------~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~----- 78 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDN------------APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT----- 78 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E-----
T ss_pred CHHHHHHHHHHHHHHhhc------------CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe-----
Confidence 344566777777777666 235899999999999999999988531 1222222222221
Q ss_pred ecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChh
Q 017631 81 KTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPES 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~ 160 (368)
....|..|+++|||+||+......
T Consensus 79 ---------------------------------------------------~Y~~p~~pnv~lWDlPG~gt~~f~----- 102 (376)
T PF05049_consen 79 ---------------------------------------------------PYPHPKFPNVTLWDLPGIGTPNFP----- 102 (376)
T ss_dssp ---------------------------------------------------EEE-SS-TTEEEEEE--GGGSS-------
T ss_pred ---------------------------------------------------eCCCCCCCCCeEEeCCCCCCCCCC-----
Confidence 145678899999999999764322
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 161 VVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 161 ~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
..+.+. .--+...|.+| ++.+ ..+...+. .+++.+...++++++|-||+|.
T Consensus 103 ~~~Yl~---~~~~~~yD~fi-ii~s--~rf~~ndv-~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 PEEYLK---EVKFYRYDFFI-IISS--ERFTENDV-QLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHHH---HTTGGG-SEEE-EEES--SS--HHHH-HHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHHH---HccccccCEEE-EEeC--CCCchhhH-HHHHHHHHcCCcEEEEEecccc
Confidence 111111 11255889554 4433 33444444 4889999999999999999997
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.47 E-value=8.9e-13 Score=110.66 Aligned_cols=69 Identities=28% Similarity=0.352 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCC--CCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDP--TGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~--~~~~~i~VltK~ 216 (368)
..+.++||||... ...+...++..+|+++++++..+. ..-.....+...+.. .+.|+++|+||+
T Consensus 52 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~ 117 (164)
T cd04101 52 VELFIFDSAGQEL-------------YSDMVSNYWESPSVFILVYDVSNK-ASFENCSRWVNKVRTASKHMPGVLVGNKM 117 (164)
T ss_pred EEEEEEECCCHHH-------------HHHHHHHHhCCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 4788999999622 255678889999988766654332 111111222222221 358999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+.+.
T Consensus 118 Dl~~~ 122 (164)
T cd04101 118 DLADK 122 (164)
T ss_pred ccccc
Confidence 99754
No 87
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.47 E-value=7e-13 Score=113.76 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=46.6
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...+++|||||..+ +......++..+|++++++++ ..... ......+..+...+.|+++|+||+|
T Consensus 61 ~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i~v~d~-~~~~~-~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAILVVDA-NEGVQ-PQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEEEEEEC-CCCCc-HHHHHHHHHHHHCCCCeEEEEECCC
Confidence 45799999999753 134567778899988766654 33222 2222334444446799999999999
Q ss_pred ccCC
Q 017631 218 LMDK 221 (368)
Q Consensus 218 ~~~~ 221 (368)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 88
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=8e-13 Score=111.52 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCccc-ccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIV-TRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~-t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.++.|+++|.+|+|||||++++++..+.|. .++. +.......
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~------------------------------------ 48 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKT------------------------------------ 48 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEEEE------------------------------------
Confidence 468999999999999999999997665222 1111 10000000
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc--c
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA--T 192 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~--~ 192 (368)
+.+ ......+.++|+||... +......++..+|+++++++..+.+.. .
T Consensus 49 ----------------~~~-~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 98 (169)
T cd04114 49 ----------------VEI-KGEKIKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCEESFRCL 98 (169)
T ss_pred ----------------EEE-CCEEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 001 11123578999999643 144557789999988777654332110 1
Q ss_pred hHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 193 SDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 ~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+...++.....+.|.++|.||+|+..+
T Consensus 99 ~~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 99 PEWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 12333334445557889999999998754
No 89
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.8e-11 Score=109.44 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=106.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCcc---ccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLP---RGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQE 112 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p---~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 112 (368)
.-|.|.++|..|.||||+|+.|++.++ | .|+.++|.+.+.+ |.+.+++.-.-....-.+. .+|..+...-+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~v-M~G~~e~~ipGnal~vd~~---~pF~gL~~FG~a 131 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAV-MHGDEEGSIPGNALVVDAK---KPFRGLNKFGNA 131 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEE-EecCcccccCCceeeecCC---CchhhhhhhHHH
Confidence 469999999999999999999999885 5 2334444433222 2222221110001111111 234444433322
Q ss_pred HHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc
Q 017631 113 ETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT 192 (368)
Q Consensus 113 ~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~ 192 (368)
-..+..+ ..+..+-...+++|||||+.+.... .-+-.-.+...+..|..++|.|||+.++..-|++.
T Consensus 132 flnRf~c-----------sqmp~~vLe~vtiVdtPGILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd 198 (532)
T KOG1954|consen 132 FLNRFMC-----------SQLPNQVLESVTIVDTPGILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 198 (532)
T ss_pred HHHHHHH-----------hcCChhhhhheeeeccCcccccchh--cccccCChHHHHHHHHHhccEEEEEechhhccccH
Confidence 2233222 2344555668999999999885432 22222335677888999999999888887767644
Q ss_pred hHHHHHHHhhCCCCCceEEeeccCcccCCcc
Q 017631 193 SDAVKLSREVDPTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 193 ~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~ 223 (368)
+..+++..+......+-+|+||+|.++..+
T Consensus 199 -Ef~~vi~aLkG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 199 -EFKRVIDALKGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred -HHHHHHHHhhCCcceeEEEeccccccCHHH
Confidence 445588889988999999999999997744
No 90
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.46 E-value=1.5e-12 Score=111.67 Aligned_cols=116 Identities=19% Similarity=0.328 Sum_probs=70.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-.|+++|.+|+|||||++++++..+... .|+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-------~~t~----------------------------------------- 35 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-------VPTK----------------------------------------- 35 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-------CCcc-----------------------------------------
Confidence 3699999999999999999998765211 1110
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH-
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV- 196 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~- 196 (368)
++....+.+.+.......+.++||||... +..+...|++++|+++++++..+.. ......
T Consensus 36 -----~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~-~~~~~~~ 96 (183)
T cd04152 36 -----GFNTEKIKVSLGNSKGITFHFWDVGGQEK-------------LRPLWKSYTRCTDGIVFVVDSVDVE-RMEEAKT 96 (183)
T ss_pred -----ccceeEEEeeccCCCceEEEEEECCCcHh-------------HHHHHHHHhccCCEEEEEEECCCHH-HHHHHHH
Confidence 00000111111122345689999999732 2456678899999887776544321 111111
Q ss_pred ---HHHHhhCCCCCceEEeeccCcccC
Q 017631 197 ---KLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 197 ---~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
.+.......+.|+++|+||+|+..
T Consensus 97 ~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 97 ELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 122222335789999999999864
No 91
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.46 E-value=8.2e-13 Score=112.76 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=57.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh----CCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV----DPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~----~~~~~~~i~Vlt 214 (368)
..+.|+||||.. .+..+...|++++|++++|++..+ ..+-.....++..+ ...+.|+++|.|
T Consensus 63 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAGQE-------------RFRSLTTAFFRDAMGFLLIFDLTN-EQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCChH-------------HHHHHHHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 367899999952 235667889999998876665433 21111222222222 123578999999
Q ss_pred cCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccH
Q 017631 215 KLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDM 257 (368)
Q Consensus 215 K~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~ 257 (368)
|+|+.+... +...+.+ ..+.+++.+...+..++++.+..
T Consensus 129 K~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sak~~~~v~~l~~~ 171 (180)
T cd04127 129 KADLEDQRQVSEEQAKALAD----KYGIPYFETSAATGTNVEKAVER 171 (180)
T ss_pred CccchhcCccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999975322 1222221 12345666666666554444333
No 92
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.46 E-value=7.2e-13 Score=110.93 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhC--CCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVD--PTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~--~~~~~~i~VltK~ 216 (368)
..+.|+||||... +..+...|++.+|+++++++..+.. .-.....+...+. ..+.|+++|+||+
T Consensus 51 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACILVFSTTDRE-SFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHH-------------HHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 4688999999532 3556778899999877666543321 1111112222221 2368999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 117 Dl~~~ 121 (162)
T cd04106 117 DLLDQ 121 (162)
T ss_pred hcccc
Confidence 99754
No 93
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.46 E-value=7.5e-13 Score=111.03 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhC--CCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVD--PTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~--~~~~~~i~VltK~ 216 (368)
..+.++||||... +..+...|++++|++++|++..+. ........+...+. ....|+++|+||+
T Consensus 49 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~p~ivv~nK~ 114 (161)
T cd04124 49 ILVDFWDTAGQER-------------FQTMHASYYHKAHACILVFDVTRK-ITYKNLSKWYEELREYRPEIPCIVVANKI 114 (161)
T ss_pred EEEEEEeCCCchh-------------hhhhhHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCcEEEEEECc
Confidence 4678999999633 255678899999988777654332 22122222222222 1258999999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 115 Dl~~ 118 (161)
T cd04124 115 DLDP 118 (161)
T ss_pred cCch
Confidence 9853
No 94
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.46 E-value=4.5e-13 Score=107.84 Aligned_cols=25 Identities=20% Similarity=0.558 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
-+|++||+.+||||||+++|.|.+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC
Confidence 3799999999999999999999875
No 95
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.46 E-value=9.6e-13 Score=112.18 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...+.||||||..+ +..++..++..+|++|+|++.. .....+.. ..+..+...+.|+++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~-~~~~~~~~-~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLVDAT-QGVEAQTL-ANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCChh-------------hHHHHHHHHHhcCeEEEEEECC-CCccHhhH-HHHHHHHHcCCCEEEEEECCC
Confidence 44688999999954 1455677889999887766543 32222222 222223335689999999999
Q ss_pred ccC
Q 017631 218 LMD 220 (368)
Q Consensus 218 ~~~ 220 (368)
+..
T Consensus 131 l~~ 133 (179)
T cd01890 131 LPS 133 (179)
T ss_pred CCc
Confidence 864
No 96
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.46 E-value=1.1e-12 Score=109.68 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHHHHHhhCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.+.++|+||... ...+...++..+|+++++++..+.. .... +...+....+...|+++|+||+
T Consensus 50 ~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~ 115 (162)
T cd04123 50 DLAIWDTAGQER-------------YHALGPIYYRDADGAILVYDITDAD-SFQKVKKWIKELKQMRGNNISLVIVGNKI 115 (162)
T ss_pred EEEEEECCchHH-------------HHHhhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 688999999532 2445667788999777666543322 1111 2222233344468999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+..+
T Consensus 116 D~~~~ 120 (162)
T cd04123 116 DLERQ 120 (162)
T ss_pred ccccc
Confidence 99743
No 97
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.45 E-value=7.5e-13 Score=114.21 Aligned_cols=108 Identities=10% Similarity=0.108 Sum_probs=58.9
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhC---CCCCceEEee
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVD---PTGERTFGVL 213 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~---~~~~~~i~Vl 213 (368)
.+.||||||... +..+...|++.+|++|++++..+. .+-. .+...+.... ....|+++|.
T Consensus 48 ~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 48 MLEVLDTAGQEE-------------YTALRDQWIREGEGFILVYSITSR-STFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEECCCchh-------------hHHHHHHHHHhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 588999999632 245567789999988776654332 1111 2222222222 2467999999
Q ss_pred ccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHH
Q 017631 214 TKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAAR 261 (368)
Q Consensus 214 tK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~ 261 (368)
||+|+.....................|+.+.+.+..++++.+..+...
T Consensus 114 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 114 NKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred EChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 999997432211111110011123356666666666555555554443
No 98
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.45 E-value=6.8e-13 Score=110.91 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=56.7
Q ss_pred EEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 143 LIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 143 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+|||||....... . ......++..+|+++++++..........+ +.. +. .+.|+++++||+|+....
T Consensus 41 ~iDtpG~~~~~~~--------~-~~~~~~~~~~ad~il~v~d~~~~~s~~~~~--~~~-~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHPR--------W-YHALITTLQDVDMLIYVHGANDPESRLPAG--LLD-IG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCHH--------H-HHHHHHHHhcCCEEEEEEeCCCcccccCHH--HHh-cc-CCCCeEEEEEccccCccc
Confidence 6999998653211 1 222244578999877766544322111111 222 22 357899999999986432
Q ss_pred c-hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 223 T-NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 223 ~-~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
. .+.+.+. ......+++.+..++++++.++++.+..
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence 1 1222222 1222246777888877776665555443
No 99
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.45 E-value=6.5e-13 Score=111.84 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhC---CCCCceEEe
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVD---PTGERTFGV 212 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~---~~~~~~i~V 212 (368)
..+.++||||.... ..+...++..+|++++|.+..+. .+-. .+...++... ....|+++|
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 49 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSVTSK-QSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred EEEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 46889999998541 34456778899987766554332 1111 2222333332 246899999
Q ss_pred eccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccC
Q 017631 213 LTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKN 254 (368)
Q Consensus 213 ltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~ 254 (368)
.||+|+....................+|+.++...+.++++.
T Consensus 115 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 115 GNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred EECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Confidence 999999753221111100001122345666666665554433
No 100
>PLN03118 Rab family protein; Provisional
Probab=99.45 E-value=9.7e-13 Score=115.48 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=62.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH----HHHHHHhhC-CCCCceEEee
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD----AVKLSREVD-PTGERTFGVL 213 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~----~~~l~~~~~-~~~~~~i~Vl 213 (368)
..+.|+||||... +..+...|++.+|++++|++..+.. .-.. +...+.... ....++++|.
T Consensus 62 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~vlv~D~~~~~-sf~~~~~~~~~~~~~~~~~~~~~~ilv~ 127 (211)
T PLN03118 62 LKLTIWDTAGQER-------------FRTLTSSYYRNAQGIILVYDVTRRE-TFTNLSDVWGKEVELYSTNQDCVKMLVG 127 (211)
T ss_pred EEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 3688999999743 2455678899999888776554321 1111 112222222 2356889999
Q ss_pred ccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHHH
Q 017631 214 TKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRRE 264 (368)
Q Consensus 214 tK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E 264 (368)
||+|+........+............|+.+...+..+++..+..+.....+
T Consensus 128 NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 128 NKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred ECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999987432211111110111123456677777766666666655554433
No 101
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.44 E-value=1.5e-12 Score=113.19 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=47.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+.++||||... +..+...|++++|++|+|++..+.. +.. ..+...++.....+.|+++|.||+
T Consensus 49 v~l~iwDtaGqe~-------------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred EEEEEEeCCCchh-------------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 4788999999743 2567788999999888776554431 111 123334444445578999999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 116 DL~~ 119 (202)
T cd04120 116 DCET 119 (202)
T ss_pred cccc
Confidence 9864
No 102
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.44 E-value=2.1e-12 Score=107.13 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=43.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH----HHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK----LSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~----l~~~~~~~~~~~i~Vlt 214 (368)
..+.++||||... +..+...|+..+|+++++++....+ ....... +.......+.|+++|+|
T Consensus 44 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~n 109 (159)
T cd04159 44 VTLKVWDLGGQPR-------------FRSMWERYCRGVNAIVYVVDAADRT-ALEAAKNELHDLLEKPSLEGIPLLVLGN 109 (159)
T ss_pred EEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 4688999999733 2455678899999877666443321 1111111 11111224679999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+...
T Consensus 110 K~D~~~~ 116 (159)
T cd04159 110 KNDLPGA 116 (159)
T ss_pred CccccCC
Confidence 9998754
No 103
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.44 E-value=2e-12 Score=108.05 Aligned_cols=111 Identities=21% Similarity=0.312 Sum_probs=68.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+++|.+|+|||||+|++.+..+.. . .|+.-
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~-----~~t~~----------------------------------------- 32 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--T-----IPTVG----------------------------------------- 32 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--c-----cCccC-----------------------------------------
Confidence 58999999999999999999987521 1 11100
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL 198 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l 198 (368)
+. .-. +..+....+.++||||... +..+...++..+|++|++++..+. ..-......
T Consensus 33 -----~~--~~~--~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~iv~v~D~~~~-~~~~~~~~~ 89 (160)
T cd04156 33 -----FN--VEM--LQLEKHLSLTVWDVGGQEK-------------MRTVWKCYLENTDGLVYVVDSSDE-ARLDESQKE 89 (160)
T ss_pred -----cc--eEE--EEeCCceEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCcH-HHHHHHHHH
Confidence 00 000 1122335789999999743 244566788999988766654332 111222211
Q ss_pred HHhh----CCCCCceEEeeccCcccC
Q 017631 199 SREV----DPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 199 ~~~~----~~~~~~~i~VltK~D~~~ 220 (368)
+..+ ...+.|+++|+||+|+..
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 90 LKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhchhhcCCCEEEEEECccccc
Confidence 2211 124689999999999964
No 104
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.44 E-value=1.7e-12 Score=110.16 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=84.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|+|+|++|+|||||++.+.+..+ |....++...-..
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~~~~~------------------------------------------ 40 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIEDAYK------------------------------------------ 40 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcccceEE------------------------------------------
Confidence 699999999999999999998875 3221111110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAV 196 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~ 196 (368)
..+.+ ......+.|+||||... +..+...|+..+|++|+|++..+.. +.. ..+.
T Consensus 41 ----------~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~ 96 (172)
T cd04141 41 ----------QQARI-DNEPALLDILDTAGQAE-------------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK 96 (172)
T ss_pred ----------EEEEE-CCEEEEEEEEeCCCchh-------------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHH
Confidence 00111 11223688999999743 2556778899999888776554321 111 1222
Q ss_pred HHHHhh-CCCCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccH
Q 017631 197 KLSREV-DPTGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDM 257 (368)
Q Consensus 197 ~l~~~~-~~~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~ 257 (368)
..+... ...+.|+++|.||+|+..... +...+.+ ....+|+.+......++++.+..
T Consensus 97 ~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 97 KLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR----EFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred HHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH----HhCCEEEEEecCCCCCHHHHHHH
Confidence 333333 234689999999999864321 1112211 12345666666665555444433
No 105
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.43 E-value=9.5e-13 Score=115.87 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCC---CCCceEEe
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDP---TGERTFGV 212 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~---~~~~~i~V 212 (368)
..+.|+||||... ...+...|++++|++|+|++..+.. .-. .+...+..... ...|+++|
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~l~~~~~~~ad~iilV~D~t~~~-s~~~~~~w~~~l~~~~~~~~~~~piilV 115 (215)
T cd04109 50 VTLQVWDIGGQSI-------------GGKMLDKYIYGAHAVFLVYDVTNSQ-SFENLEDWYSMVRKVLKSSETQPLVVLV 115 (215)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhccccCCCceEEEE
Confidence 4688999999532 2566778899999888776654321 111 22223333321 23568999
Q ss_pred eccCcccCCcch----HHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 213 LTKLDLMDKGTN----ALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 213 ltK~D~~~~~~~----~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
.||+|+...... ...+.+ ..+.+++.+.+.++.++...+..+.
T Consensus 116 gNK~DL~~~~~v~~~~~~~~~~----~~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 116 GNKTDLEHNRTVKDDKHARFAQ----ANGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred EECcccccccccCHHHHHHHHH----HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999743221 122221 1234566666666665554444433
No 106
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.43 E-value=1.9e-12 Score=113.59 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=89.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
..|+|+|++|+|||||+|++++..+-+... ++... ....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~--d~~~-------------------------------------- 41 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGV--DFFS-------------------------------------- 41 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceece--EEEE--------------------------------------
Confidence 579999999999999999999987522211 10000 0000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
..+.+.......+.++||||... +..+...|++++|+++++++..+. ..-.....
T Consensus 42 -----------~~i~~~~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~-~Sf~~l~~ 96 (211)
T cd04111 42 -----------RLIEIEPGVRIKLQLWDTAGQER-------------FRSITRSYYRNSVGVLLVFDITNR-ESFEHVHD 96 (211)
T ss_pred -----------EEEEECCCCEEEEEEEeCCcchh-------------HHHHHHHHhcCCcEEEEEEECCCH-HHHHHHHH
Confidence 00111111223688999999632 245667889999988776654332 11112222
Q ss_pred HHH----hhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHH
Q 017631 198 LSR----EVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRR 263 (368)
Q Consensus 198 l~~----~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~ 263 (368)
+.. ...+...++++|.||+|+........+.........+.+|+.+...++.++.+.+..+.....
T Consensus 97 ~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 97 WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222 223445678899999999754221111111111123356777777777766666666554443
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.43 E-value=1.5e-12 Score=110.45 Aligned_cols=114 Identities=20% Similarity=0.326 Sum_probs=70.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-++|+++|++|+|||||+++|++..+ +. ..|+.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t~--------------------------------------- 46 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPTL--------------------------------------- 46 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCcc---------------------------------------
Confidence 347899999999999999999998753 11 01100
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
++.. -.+.+ +...+.++||||... +..+...|+..+|++++|++..+.. .-...
T Consensus 47 -------g~~~--~~~~~---~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 100 (173)
T cd04154 47 -------GFQI--KTLEY---EGYKLNIWDVGGQKT-------------LRPYWRNYFESTDALIWVVDSSDRL-RLDDC 100 (173)
T ss_pred -------ccce--EEEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCCHH-HHHHH
Confidence 0000 00111 234689999999743 2455678899999888776554431 11111
Q ss_pred H----HHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 V----KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~----~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
. .+.......+.|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 101 KRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 1 1222222346899999999999754
No 108
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.43 E-value=2.4e-12 Score=110.81 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||... ...+...+++.+|+++++++..+. ..-.. +...+....+...|+++|.||
T Consensus 49 ~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~iilv~d~~~~-~s~~~i~~~~~~i~~~~~~~~~~ivv~nK 114 (188)
T cd04125 49 IKLQIWDTNGQER-------------FRSLNNSYYRGAHGYLLVYDVTDQ-ESFENLKFWINEINRYARENVIKVIVANK 114 (188)
T ss_pred EEEEEEECCCcHH-------------HHhhHHHHccCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 3678999999632 245678889999988877655332 11111 222233333445789999999
Q ss_pred CcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHH
Q 017631 216 LDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAAR 261 (368)
Q Consensus 216 ~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~ 261 (368)
.|+.+... ....... ..+..++.+....+.++...+..+...
T Consensus 115 ~Dl~~~~~v~~~~~~~~~~----~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 115 SDLVNNKVVDSNIAKSFCD----SLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred CCCcccccCCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99874321 1111211 123356777776666665555544443
No 109
>PTZ00369 Ras-like protein; Provisional
Probab=99.43 E-value=1.5e-12 Score=112.19 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=69.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-..|+|+|++|+|||||++++.+..+. ....++......
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~---------------------------------------- 43 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYR---------------------------------------- 43 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEE----------------------------------------
Confidence 368999999999999999999987752 111111100000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-c-chH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-A-TSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~-~~~ 194 (368)
..+.+ ......+.++||||.... ..+...|++.+|++++|++..+.+. . ...
T Consensus 44 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~ 97 (189)
T PTZ00369 44 ------------KQCVI-DEETCLLDILDTAGQEEY-------------SAMRDQYMRTGQGFLCVYSITSRSSFEEIAS 97 (189)
T ss_pred ------------EEEEE-CCEEEEEEEEeCCCCccc-------------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 00011 112235779999997441 4456778999998877765544321 0 111
Q ss_pred HHHHHHhh-CCCCCceEEeeccCcccC
Q 017631 195 AVKLSREV-DPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~~-~~~~~~~i~VltK~D~~~ 220 (368)
+...+... ...+.|+++|.||+|+..
T Consensus 98 ~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 98 FREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 22222222 233679999999999864
No 110
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.43 E-value=1.6e-12 Score=108.54 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=44.5
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc--chHHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA--TSDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~--~~~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||... +..+...|+..+|+++++++..+.. +. ......+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQTS-------------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 4688999999853 2456778899999887776543321 10 111111222222246899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+...
T Consensus 110 ~Dl~~~ 115 (158)
T cd04151 110 QDMPGA 115 (158)
T ss_pred CCCCCC
Confidence 998754
No 111
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.42 E-value=2.2e-12 Score=112.30 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=59.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh-------CCCCCceEE
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV-------DPTGERTFG 211 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~-------~~~~~~~i~ 211 (368)
..+.|+||||... +..+...|++++|++|++++..+. ..-.....+...+ .....|+++
T Consensus 50 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~a~~~ilv~D~t~~-~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQER-------------FGGMTRVYYRGAVGAIIVFDVTRP-STFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCchh-------------hhhhHHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 4688999999732 255678899999988877654332 1111111111111 124579999
Q ss_pred eeccCcccCCcc----hHHHhhhCCCccCC-CCeEEEEeCCccccccCccHHHH
Q 017631 212 VLTKLDLMDKGT----NALDILEGRSYPLQ-HPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 212 VltK~D~~~~~~----~~~~~~~~~~~~~~-~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
|.||+|+.+... +..++.+ ..+ .+|+.+...++.++.+.+..+..
T Consensus 116 v~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~~v~e~f~~l~~ 165 (201)
T cd04107 116 LANKCDLKKRLAKDGEQMDQFCK----ENGFIGWFETSAKEGINIEEAMRFLVK 165 (201)
T ss_pred EEECCCcccccccCHHHHHHHHH----HcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 999999974211 2222222 112 35666766666655555544443
No 112
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.42 E-value=1.7e-12 Score=106.41 Aligned_cols=24 Identities=17% Similarity=0.549 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
+|+++|++|+|||||+|+|++..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 689999999999999999998764
No 113
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.42 E-value=3.3e-12 Score=106.89 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH---H-HhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL---S-REVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l---~-~~~~~~~~~~i~Vlt 214 (368)
..+.++||||... ...+...+++.+|+++++++..+ ...-+....+ + +.....+.|.++|.|
T Consensus 49 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 49 VKLAIWDTAGQER-------------FRTLTSSYYRGAQGVILVYDVTR-RDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHhCCCCEEEEEEECCC-HHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 4688999999633 14445777899998776665432 2111222222 2 222345788999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+...
T Consensus 115 K~D~~~~ 121 (161)
T cd01863 115 KIDKENR 121 (161)
T ss_pred CCccccc
Confidence 9999843
No 114
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.42 E-value=1.1e-12 Score=110.08 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHHHHHHhh-CCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAVKLSREV-DPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~~l~~~~-~~~~~~~i~VltK~ 216 (368)
.+.|+||||.... ..+...|++++|++++|++.++.. +.. ..+...+... ...+.|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTEQF-------------ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCcccc-------------cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 5789999996432 344567889999887766543321 111 1122112222 23578999999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 117 Dl~~ 120 (163)
T cd04176 117 DLES 120 (163)
T ss_pred cchh
Confidence 9864
No 115
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.42 E-value=1.8e-12 Score=109.59 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=43.9
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh----CCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV----DPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~----~~~~~~~i~Vl 213 (368)
...+.++||||.... ..+...|+..+|++++|++..+.. .-.........+ .....|+++|.
T Consensus 42 ~~~i~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~s~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHKL-------------RPLWKHYYLNTQAVVFVVDSSHRD-RVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChhc-------------chHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 347889999997431 345677889999888776654321 111222222222 12347899999
Q ss_pred ccCcccCC
Q 017631 214 TKLDLMDK 221 (368)
Q Consensus 214 tK~D~~~~ 221 (368)
||+|+...
T Consensus 108 NK~Dl~~~ 115 (169)
T cd04158 108 NKQDVAGA 115 (169)
T ss_pred eCcCcccC
Confidence 99999643
No 116
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.42 E-value=2e-12 Score=108.99 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=69.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+++|+.|+|||||+|++.+..+ |... +.+...+++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~-~~~~~~~~~~---------------------------------------- 39 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENV-PRVLPEITIP---------------------------------------- 39 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccC-CCcccceEee----------------------------------------
Confidence 689999999999999999999875 3221 1111110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch----H
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS----D 194 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~----~ 194 (368)
..+ ......+.+|||||.... ......++..+|+++++++. +....-. .
T Consensus 40 ------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~-~~~~s~~~~~~~ 92 (166)
T cd01893 40 ------------ADV-TPERVPTTIVDTSSRPQD-------------RANLAAEIRKANVICLVYSV-DRPSTLERIRTK 92 (166)
T ss_pred ------------eee-cCCeEEEEEEeCCCchhh-------------hHHHhhhcccCCEEEEEEEC-CCHHHHHHHHHH
Confidence 011 112346889999997531 23456677999987766643 3222111 2
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+...++...+ +.|+++|+||+|+.+..
T Consensus 93 ~~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 93 WLPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHHHhCC-CCCEEEEEEchhccccc
Confidence 3333444443 78999999999997543
No 117
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.42 E-value=2.1e-12 Score=110.20 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=82.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+++|.+|+|||||++++++..+ +....+++.....-.+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~--------------------------------------- 42 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKII--------------------------------------- 42 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEE---------------------------------------
Confidence 689999999999999999998774 3222222211100000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH--
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV-- 196 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~-- 196 (368)
.+ ......+.++||||... +..+...+...+++++++++..+. ..-+...
T Consensus 43 -------------~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~ 94 (180)
T cd04137 43 -------------RY-KGQDYHLEIVDTAGQDE-------------YSILPQKYSIGIHGYILVYSVTSR-KSFEVVKVI 94 (180)
T ss_pred -------------EE-CCEEEEEEEEECCChHh-------------hHHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHH
Confidence 01 11223578999999743 133455678889977766654332 1112222
Q ss_pred --HHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 197 --KLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 197 --~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
.+++.....+.|+++|.||+|+..+..................++.+...+..++...+..+.
T Consensus 95 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 95 YDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred HHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 233333345679999999999974322111111100112223455666655555544444443
No 118
>PLN03110 Rab GTPase; Provisional
Probab=99.42 E-value=2.7e-12 Score=113.04 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=87.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.-.|+++|++|+|||||+++|++..+ +....+ |. . ..+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~-t~-g--~~~~------------------------------------ 50 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLESKS-TI-G--VEFA------------------------------------ 50 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-ce-e--EEEE------------------------------------
Confidence 45899999999999999999999875 221111 10 0 0000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-c-chH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-A-TSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~-~~~ 194 (368)
...+.+ ......+.|+||||... +..+...|++.++.+++|++..+... . ...
T Consensus 51 -----------~~~v~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 51 -----------TRTLQV-EGKTVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQTFDNVQR 105 (216)
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHH-------------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence 000111 11224688999999632 25567888999997776655433211 0 123
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
++..+....+.+.|+++|.||+|+........+...........+++.+....+.++.+.++.+.
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 33344444455789999999999864322111111101112234566666666665544444443
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.42 E-value=1.6e-12 Score=108.35 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=70.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+|+|++|+|||||+++|++..+ +....+.+.......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~~---------------------------------------- 39 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRKT---------------------------------------- 39 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEEE----------------------------------------
Confidence 489999999999999999998773 333333222111100
Q ss_pred CCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 119 GKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
+... ....+.++|+||... ...+...++..+|+++++++..+.+ .......
T Consensus 40 --------------~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 91 (160)
T cd00876 40 --------------IVVDGETYTLDILDTAGQEE-------------FSAMRDLYIRQGDGFILVYSITDRE-SFEEIKG 91 (160)
T ss_pred --------------EEECCEEEEEEEEECCChHH-------------HHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHH
Confidence 1111 124688999999744 2455667888999887766544322 1111111
Q ss_pred ---HHHhhCC-CCCceEEeeccCcccCC
Q 017631 198 ---LSREVDP-TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 198 ---l~~~~~~-~~~~~i~VltK~D~~~~ 221 (368)
.+..... .+.|+++|+||+|+...
T Consensus 92 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 92 YREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 2222222 47999999999999863
No 120
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.41 E-value=2.5e-12 Score=108.92 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=83.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|++||++|+|||||++++++..| +....++..... ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~--~~--------------------------------------- 39 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDF--EM--------------------------------------- 39 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEE--EE---------------------------------------
Confidence 589999999999999999999875 322211111000 00
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAV 196 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~ 196 (368)
..+.+. .....+.|+||||... +..+...+++.+|++++|++..+.. +.. ..+.
T Consensus 40 ----------~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 40 ----------ERFEIL-GVPFSLQLWDTAGQER-------------FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred ----------EEEEEC-CEEEEEEEEeCCChHH-------------HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 001111 1124688999999843 2456678899999877666543321 111 1222
Q ss_pred HH-HHhhCCCCCceEEeeccCcccCCcc-h-HHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 197 KL-SREVDPTGERTFGVLTKLDLMDKGT-N-ALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 197 ~l-~~~~~~~~~~~i~VltK~D~~~~~~-~-~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
.. .+...+...|+++|.||+|+.+... . ...........+...|+.+...+..++...+..+.
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 21 1222344467899999999864322 0 11111100112233556666665555444444433
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.41 E-value=2.2e-12 Score=109.65 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+++|.+|+|||||+++|++..+.+.. .|-.+..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~---~t~~~~~---------------------------------------- 51 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS---PTIGSNV---------------------------------------- 51 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC---Cccccce----------------------------------------
Confidence 368999999999999999999887652211 1100000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.. +. .....+.++||||... +..+...|++.+|++++|++..... .-....
T Consensus 52 ------------~~--~~-~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vi~V~D~s~~~-~~~~~~ 102 (174)
T cd04153 52 ------------EE--IV-YKNIRFLMWDIGGQES-------------LRSSWNTYYTNTDAVILVIDSTDRE-RLPLTK 102 (174)
T ss_pred ------------EE--EE-ECCeEEEEEECCCCHH-------------HHHHHHHHhhcCCEEEEEEECCCHH-HHHHHH
Confidence 00 11 1234689999999843 2445567889999888776654321 111111
Q ss_pred H----HHHhhCCCCCceEEeeccCcccC
Q 017631 197 K----LSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 197 ~----l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
. ++........|+++|+||+|+..
T Consensus 103 ~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 103 EELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 1 22212223589999999999864
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.41 E-value=5.5e-12 Score=106.15 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=45.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh----CCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV----DPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~----~~~~~~~i~Vl 213 (368)
...+.++||||... +..+...++..+|+++++++..+.. ........+..+ ...+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQES-------------LRSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 45789999999843 2455677899999887776553321 112222222221 23468999999
Q ss_pred ccCcccCC
Q 017631 214 TKLDLMDK 221 (368)
Q Consensus 214 tK~D~~~~ 221 (368)
||+|+...
T Consensus 115 NK~D~~~~ 122 (167)
T cd04160 115 NKQDLPDA 122 (167)
T ss_pred EccccccC
Confidence 99998654
No 123
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.41 E-value=3.2e-12 Score=107.19 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=48.9
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCC---CeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKP---NCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.++++||||+..... +.+..+.+..+...|+... +.+++ +.+..... ......+.+.+...+.|+++|+||+
T Consensus 46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~-~~~~~~~~~~l~~~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVL-LIDSRHGP-TEIDLEMLDWLEELGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEE-EEEcCcCC-CHhHHHHHHHHHHcCCCEEEEEEch
Confidence 789999999866432 2223455566677777644 44444 44443332 2222335566666678999999999
Q ss_pred cccCCc
Q 017631 217 DLMDKG 222 (368)
Q Consensus 217 D~~~~~ 222 (368)
|+..++
T Consensus 121 D~~~~~ 126 (170)
T cd01876 121 DKLKKS 126 (170)
T ss_pred hcCChH
Confidence 997554
No 124
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.41 E-value=3.9e-13 Score=115.82 Aligned_cols=128 Identities=22% Similarity=0.360 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHH----HHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRK----EIQ 111 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~ 111 (368)
....|+++|+.++|||||+++|++..- ...... ... ...
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~------~~~~~~-------------------------------~~~~~~~~~~ 44 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAG------AIDKRG-------------------------------IEETKNAFLD 44 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHT------SSSSHH-------------------------------HHHHHHCHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhcc------cccccc-------------------------------cccccccccc
Confidence 457899999999999999999997542 111000 000 000
Q ss_pred H-HHhhhhCCCCCCCCCceEEEEe-cCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc
Q 017631 112 E-ETDRVTGKSKQISPVPIHLSIY-SPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD 189 (368)
Q Consensus 112 ~-~~~~~~~~~~~~s~~~i~i~i~-~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~ 189 (368)
. ..+. .++++.+.-...+. ......+++|||||..+ +...+...+..+|++|++| ++..+
T Consensus 45 ~~~~e~----~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~-------------f~~~~~~~~~~~D~ailvV-da~~g 106 (188)
T PF00009_consen 45 KHPEER----ERGITIDLSFISFEKNENNRKITLIDTPGHED-------------FIKEMIRGLRQADIAILVV-DANDG 106 (188)
T ss_dssp SSHHHH----HCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-------------HHHHHHHHHTTSSEEEEEE-ETTTB
T ss_pred ccchhh----hcccccccccccccccccccceeecccccccc-------------eeecccceecccccceeee-ecccc
Confidence 0 0011 13344444444444 35667899999999844 1334556688999777655 44444
Q ss_pred ccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 190 LATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
... .....+..+...+.|+++|+||+|+.
T Consensus 107 ~~~-~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 107 IQP-QTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp STH-HHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ccc-ccccccccccccccceEEeeeeccch
Confidence 433 33446666666788899999999999
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.41 E-value=3.8e-12 Score=109.22 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=70.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-+.|+++|.+|||||||+|++++..+... ..|..++...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~---~~t~~~~~~~-------------------------------------- 55 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQH---QPTQHPTSEE-------------------------------------- 55 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCccc---CCccccceEE--------------------------------------
Confidence 48899999999999999999999764111 1122221111
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
+ ..+...+.++||||... ...+...|+.++|++++|++.++.+. -....
T Consensus 56 ----------------~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~ad~ii~vvD~~~~~~-~~~~~ 104 (184)
T smart00178 56 ----------------L-AIGNIKFTTFDLGGHQQ-------------ARRLWKDYFPEVNGIVYLVDAYDKER-FAESK 104 (184)
T ss_pred ----------------E-EECCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCcHHH-HHHHH
Confidence 1 11234688999999843 14556788999998887776544221 11111
Q ss_pred H-HHHhh---CCCCCceEEeeccCcccC
Q 017631 197 K-LSREV---DPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 197 ~-l~~~~---~~~~~~~i~VltK~D~~~ 220 (368)
. +.+.+ ...+.|+++|+||+|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 1 11111 224689999999999863
No 126
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.40 E-value=4e-12 Score=107.41 Aligned_cols=68 Identities=24% Similarity=0.334 Sum_probs=44.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh-C---CCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV-D---PTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~-~---~~~~~~i~Vlt 214 (368)
..+.++||||... +..+...|+.++|++|+|++..+.. .-......+..+ . ..+.|+++|.|
T Consensus 53 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~a~~ii~v~D~t~~~-s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 VKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRD-RIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCchh-hHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 4689999999843 2455677899999888777654421 122222222222 2 23579999999
Q ss_pred cCcccC
Q 017631 215 KLDLMD 220 (368)
Q Consensus 215 K~D~~~ 220 (368)
|+|+..
T Consensus 119 K~Dl~~ 124 (168)
T cd04149 119 KQDLPD 124 (168)
T ss_pred CcCCcc
Confidence 999864
No 127
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.40 E-value=4.4e-12 Score=110.25 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
....|+|+|++|+|||||++++++..+. ... ..|.. ....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-~~~-~~t~~-~~~~------------------------------------- 44 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSY-ITTIG-VDFK------------------------------------- 44 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCc-Ccccc-ceeE-------------------------------------
Confidence 3578999999999999999999988751 111 11100 0000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
...+.+ ......+.|+||||... +..+...|+.++|++++|++.++. ..-...
T Consensus 45 ------------~~~~~~-~~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~a~~iilv~D~~~~-~s~~~~ 97 (199)
T cd04110 45 ------------IRTVEI-NGERVKLQIWDTAGQER-------------FRTITSTYYRGTHGVIVVYDVTNG-ESFVNV 97 (199)
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCchh-------------HHHHHHHHhCCCcEEEEEEECCCH-HHHHHH
Confidence 001111 11223688999999632 245667889999988777655432 111222
Q ss_pred HHHHHhhC--CCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 196 VKLSREVD--PTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 196 ~~l~~~~~--~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
..++..+. ....|+++|.||+|+.+...................++.+....+.++..++..+....
T Consensus 98 ~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 98 KRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 22222221 23578999999999875422111111111112234567777776666655555554433
No 128
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.40 E-value=2.9e-12 Score=108.18 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=44.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chHHHHHHHh-hCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSDAVKLSRE-VDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~~~~l~~~-~~~~~~~~i~VltK 215 (368)
..+.++||||.... ..+...+++.++.+++++...+.. +. ...+...+.. ....+.|+++|.||
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 49 CDLEILDTAGTEQF-------------TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred EEEEEEeCCCcccc-------------hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 46789999997441 456677888999887766543321 11 1122222222 23457899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+..+
T Consensus 116 ~D~~~~ 121 (168)
T cd04177 116 ADLEDD 121 (168)
T ss_pred hhcccc
Confidence 999754
No 129
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.40 E-value=2.7e-12 Score=112.31 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=48.9
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHh
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSRE 201 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~ 201 (368)
++++.+.....+. +....+.|+||||... +...+..++..+|++++|++ +..+...+. ......
T Consensus 61 rg~T~~~~~~~~~-~~~~~~~liDTpG~~~-------------~~~~~~~~~~~ad~~llVvD-~~~~~~~~~-~~~~~~ 124 (208)
T cd04166 61 QGITIDVAYRYFS-TPKRKFIIADTPGHEQ-------------YTRNMVTGASTADLAILLVD-ARKGVLEQT-RRHSYI 124 (208)
T ss_pred CCcCeecceeEEe-cCCceEEEEECCcHHH-------------HHHHHHHhhhhCCEEEEEEE-CCCCccHhH-HHHHHH
Confidence 4455555444443 4566899999999732 12224557889997776654 444433222 122222
Q ss_pred hCCCC-CceEEeeccCcccCC
Q 017631 202 VDPTG-ERTFGVLTKLDLMDK 221 (368)
Q Consensus 202 ~~~~~-~~~i~VltK~D~~~~ 221 (368)
+...+ .++|+|+||+|+...
T Consensus 125 ~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 125 LSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HHHcCCCcEEEEEEchhcccC
Confidence 22233 457889999999753
No 130
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.40 E-value=4e-12 Score=106.02 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=45.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--hHHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--SDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||.... ..+...++..+|+++++++..+.+ +.. .....+.......+.|+++|+||
T Consensus 43 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd00878 43 VSFTVWDVGGQDKI-------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeec
Confidence 47899999997431 445677889999887766554421 111 11112223233457899999999
Q ss_pred CcccCCc
Q 017631 216 LDLMDKG 222 (368)
Q Consensus 216 ~D~~~~~ 222 (368)
+|+....
T Consensus 110 ~D~~~~~ 116 (158)
T cd00878 110 QDLPGAL 116 (158)
T ss_pred cCCcccc
Confidence 9998543
No 131
>PLN03108 Rab family protein; Provisional
Probab=99.40 E-value=5.4e-12 Score=110.62 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=84.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.-.|+|+|++|+|||||+|+|++..+.+....... . ...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--~-~~~-------------------------------------- 44 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--V-EFG-------------------------------------- 44 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--c-eEE--------------------------------------
Confidence 46799999999999999999999876332211000 0 000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
...+.+.+ ....+.++||||... +..+...++..+|++++|++..+.. ...
T Consensus 45 -----------~~~i~~~~-~~i~l~l~Dt~G~~~-------------~~~~~~~~~~~ad~~vlv~D~~~~~-s~~~l~ 98 (210)
T PLN03108 45 -----------ARMITIDN-KPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLA 98 (210)
T ss_pred -----------EEEEEECC-EEEEEEEEeCCCcHH-------------HHHHHHHHhccCCEEEEEEECCcHH-HHHHHH
Confidence 00011111 112578999999643 2455678889999888776554321 111
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCcc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVD 256 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~ 256 (368)
.+...+........|+++|.||+|+..... +..++.+ .....|+.+...+..++.+.+.
T Consensus 99 ~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 99 SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK----EHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHH
Confidence 222222333334689999999999875321 1122222 1234566666666655544443
No 132
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.39 E-value=2.4e-12 Score=108.96 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=79.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
..|+++|++|+|||||++++++..+ |....+... ....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~----~~~~------------------------------------- 40 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIG----VDFR------------------------------------- 40 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCcccccee----EEEE-------------------------------------
Confidence 5799999999999999999998774 322111100 0000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
...+.+ ......+.++||||.... ...+...|++++|++++|++..+. ..-+....
T Consensus 41 ----------~~~~~~-~~~~~~~~i~Dt~G~~~~------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~ 96 (170)
T cd04115 41 ----------ERTVEI-DGERIKVQLWDTAGQERF------------RKSMVQHYYRNVHAVVFVYDVTNM-ASFHSLPS 96 (170)
T ss_pred ----------EEEEEE-CCeEEEEEEEeCCChHHH------------HHhhHHHhhcCCCEEEEEEECCCH-HHHHhHHH
Confidence 000111 112247889999996431 023567788999988877665432 11222222
Q ss_pred HH---Hhh-CCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCC
Q 017631 198 LS---REV-DPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRS 247 (368)
Q Consensus 198 l~---~~~-~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s 247 (368)
+. ... .....|+++|.||+|+........+...........+|+.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 97 WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 22 222 234689999999999874432111111100112235677766665
No 133
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.39 E-value=4.6e-12 Score=115.28 Aligned_cols=133 Identities=19% Similarity=0.302 Sum_probs=77.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccc-----cccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHH
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVT-----RRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQE 112 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 112 (368)
-.|+|+|..|+|||||+|+|++..+.+....... ...+.+..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~--------------------------------- 51 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKS--------------------------------- 51 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEE---------------------------------
Confidence 3699999999999999999999987655332110 00011110
Q ss_pred HHhhhhCCCCCCCCCceEEEEecCC-CCCeEEEeCCCCcccCCCC-CChhHHHHHHHHHHHh------------hc--CC
Q 017631 113 ETDRVTGKSKQISPVPIHLSIYSPN-VVNLTLIDLPGITKVAVEG-QPESVVLEIETMVRSY------------IE--KP 176 (368)
Q Consensus 113 ~~~~~~~~~~~~s~~~i~i~i~~~~-~~~l~liDtPG~~~~~~~~-~~~~~~~~~~~~~~~~------------~~--~~ 176 (368)
....+...+ ...+++|||||+.+..... .-+.+.+.+......| +. ++
T Consensus 52 ----------------~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rv 115 (276)
T cd01850 52 ----------------SKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRV 115 (276)
T ss_pred ----------------EEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCce
Confidence 011121111 2369999999998754321 1112222222222222 22 46
Q ss_pred CeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 177 NCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 177 d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
|++++++.+....+...+ ..+++.+.. +.++++|+||+|++.+
T Consensus 116 h~~ly~i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 116 HACLYFIEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred EEEEEEEeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 766666666544443333 457777765 7899999999999864
No 134
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.38 E-value=5.1e-12 Score=114.58 Aligned_cols=110 Identities=11% Similarity=0.128 Sum_probs=65.5
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHh
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSRE 201 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~ 201 (368)
+++|-+.....+.+ ....+++|||||..+. ...+.+++..+|+++++| ++......+ ...+++.
T Consensus 48 rgiti~~~~~~~~~-~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVV-Da~~g~~~~-t~~~~~~ 111 (270)
T cd01886 48 RGITIQSAATTCFW-KDHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVF-DAVAGVEPQ-TETVWRQ 111 (270)
T ss_pred CCcCeeccEEEEEE-CCEEEEEEECCCcHHH-------------HHHHHHHHHHcCEEEEEE-ECCCCCCHH-HHHHHHH
Confidence 34444444444433 3568999999998541 334678899999777665 444444333 3446666
Q ss_pred hCCCCCceEEeeccCcccCCc-chHHHhhhCCCccCCCCeEEEEeCCcc
Q 017631 202 VDPTGERTFGVLTKLDLMDKG-TNALDILEGRSYPLQHPWVGIVNRSQA 249 (368)
Q Consensus 202 ~~~~~~~~i~VltK~D~~~~~-~~~~~~~~~~~~~~~~g~~~v~~~s~~ 249 (368)
+...+.|.++++||+|+.... ..+.+.++.. . ....+..+.+.|+.
T Consensus 112 ~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~-l-~~~~~~~~~Pisa~ 158 (270)
T cd01886 112 ADRYNVPRIAFVNKMDRTGADFFRVVEQIREK-L-GANPVPLQLPIGEE 158 (270)
T ss_pred HHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH-h-CCCceEEEeccccC
Confidence 666789999999999987432 1222322211 1 11244556676664
No 135
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.38 E-value=6.1e-12 Score=105.50 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=55.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHH---HhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLS---REVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~---~~~~~~~~~~i~VltK 215 (368)
..+.++||||... ...+...|..++|+++++++..+. -.-.....+. ....+...++++|.||
T Consensus 49 ~~l~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~sf~~~~~~~~~~~~~~~~~~~iilvgnK 114 (161)
T cd04117 49 VRIQIWDTAGQER-------------YQTITKQYYRRAQGIFLVYDISSE-RSYQHIMKWVSDVDEYAPEGVQKILIGNK 114 (161)
T ss_pred EEEEEEeCCCcHh-------------HHhhHHHHhcCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 3678999999633 245567789999988776654332 1111222222 2333446789999999
Q ss_pred CcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccc
Q 017631 216 LDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADIN 252 (368)
Q Consensus 216 ~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~ 252 (368)
.|+..... +...+. .....+|+.+....+.++.
T Consensus 115 ~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~ 151 (161)
T cd04117 115 ADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIK 151 (161)
T ss_pred cccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHH
Confidence 99874432 111221 1223466666666554433
No 136
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.38 E-value=4.9e-12 Score=112.43 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 137
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.38 E-value=7.6e-12 Score=105.73 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=69.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+++|++|+|||||++++++..+.+......+ ....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~-----~~~~----------------------------------- 43 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-----VEFL----------------------------------- 43 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee-----eEEE-----------------------------------
Confidence 346899999999999999999998776322111000 0000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-h
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-S 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~ 193 (368)
...+.+ ......+.|+||||... +..+...|++.+|+++++.+..+.. +.. .
T Consensus 44 ------------~~~~~~-~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (170)
T cd04116 44 ------------NKDLEV-DGHFVTLQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLS 97 (170)
T ss_pred ------------EEEEEE-CCeEEEEEEEeCCChHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHH
Confidence 000011 11234678999999632 2556778899999877665433221 111 1
Q ss_pred HHHH-HHHhh---CCCCCceEEeeccCcccC
Q 017631 194 DAVK-LSREV---DPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~~~~-l~~~~---~~~~~~~i~VltK~D~~~ 220 (368)
.+.. +.... .+.+.|+++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 1221 11211 134579999999999863
No 138
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.38 E-value=8.1e-12 Score=105.43 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=45.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh----CCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV----DPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~----~~~~~~~i~Vlt 214 (368)
..+.++||||... +..+...|++++|++|+|++.++.. .-......+..+ ...+.|+++|+|
T Consensus 43 ~~~~i~D~~G~~~-------------~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGGAN-------------FRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 4688999999632 2556788999999888777654432 222222222222 124689999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|.|+...
T Consensus 109 K~Dl~~~ 115 (167)
T cd04161 109 KQDKKNA 115 (167)
T ss_pred CCCCcCC
Confidence 9998754
No 139
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.38 E-value=2e-12 Score=108.73 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhC--CCCCceEEeec
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVD--PTGERTFGVLT 214 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~--~~~~~~i~Vlt 214 (368)
.+.+|||||..... ......+++.+|++|+|++..+. .+-+ .+...+.... ....|+++|.|
T Consensus 48 ~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 48 SLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSITDR-SSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 57899999986411 12345678899988766654332 1111 1222333332 34689999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+...
T Consensus 115 K~Dl~~~ 121 (165)
T cd04146 115 KADLLHY 121 (165)
T ss_pred CCchHHh
Confidence 9998643
No 140
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.37 E-value=9.8e-12 Score=107.10 Aligned_cols=113 Identities=15% Similarity=0.263 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-++|+++|++|||||||+++|.+..+.+ ...|..+...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~~-------------------------------------- 56 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTSE-------------------------------------- 56 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcceE--------------------------------------
Confidence 45889999999999999999999876411 1112222110
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.+.+ +...+.++||||... ...+...|++.+|.+++|++..+... -...
T Consensus 57 --------------~i~~---~~~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~iilV~D~~~~~s-~~~~ 105 (190)
T cd00879 57 --------------ELTI---GNIKFKTFDLGGHEQ-------------ARRLWKDYFPEVDGIVFLVDAADPER-FQES 105 (190)
T ss_pred --------------EEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEECCcHHH-HHHH
Confidence 1111 124678999999633 14556788999998877765543211 1111
Q ss_pred HH----HHHhhCCCCCceEEeeccCcccC
Q 017631 196 VK----LSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~----l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
.. +.+.....+.|+++|+||+|+..
T Consensus 106 ~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 106 KEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 11 22222234689999999999864
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.37 E-value=1.7e-11 Score=106.08 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=47.4
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....+.+|||||..+ +..++..|++.+|++++|++... .... ....++..+...+.|.++|+||+
T Consensus 63 ~~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~~ilV~d~~~-~~~~-~~~~~~~~~~~~~~p~iiv~NK~ 127 (194)
T cd01891 63 KDTKINIVDTPGHAD-------------FGGEVERVLSMVDGVLLLVDASE-GPMP-QTRFVLKKALELGLKPIVVINKI 127 (194)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHhcCEEEEEEECCC-CccH-HHHHHHHHHHHcCCCEEEEEECC
Confidence 345789999999843 24567889999998877665533 2222 22223444444578999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 128 Dl~~~ 132 (194)
T cd01891 128 DRPDA 132 (194)
T ss_pred CCCCC
Confidence 99743
No 142
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.37 E-value=2.3e-12 Score=114.50 Aligned_cols=151 Identities=21% Similarity=0.292 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccc-cCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPR-GSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~-~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
..++.|.+||-||||||||||||+..+- -+ ....+|-.|..
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~i------------------------------------- 235 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHI------------------------------------- 235 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC-cccccceeeecccc-------------------------------------
Confidence 3568899999999999999999998772 11 11234434411
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc--cc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD--LA 191 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~--~~ 191 (368)
| .+.+.+..++++-|+||++..+..+... ---..+.+++++.++ +|++.+.. ..
T Consensus 236 -----G------------~v~yddf~q~tVADiPGiI~GAh~nkGl------G~~FLrHiER~~~l~-fVvD~s~~~~~~ 291 (366)
T KOG1489|consen 236 -----G------------TVNYDDFSQITVADIPGIIEGAHMNKGL------GYKFLRHIERCKGLL-FVVDLSGKQLRN 291 (366)
T ss_pred -----c------------eeeccccceeEeccCccccccccccCcc------cHHHHHHHHhhceEE-EEEECCCcccCC
Confidence 1 0233344469999999999977653221 112345577888555 44454432 11
Q ss_pred chHHHH-HHHhhC-----CCCCceEEeeccCcccCCcchH-HHhhhCCCccCCCC-eEEEEeCCcccc
Q 017631 192 TSDAVK-LSREVD-----PTGERTFGVLTKLDLMDKGTNA-LDILEGRSYPLQHP-WVGIVNRSQADI 251 (368)
Q Consensus 192 ~~~~~~-l~~~~~-----~~~~~~i~VltK~D~~~~~~~~-~~~~~~~~~~~~~g-~~~v~~~s~~~~ 251 (368)
..+.++ +..++. ...+|.++|.||+|..+.+.+. .++.. .+..+ .++++..+.++.
T Consensus 292 p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~----~lq~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 292 PWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAK----RLQNPHVVPVSAKSGEGL 355 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHH----HcCCCcEEEeeeccccch
Confidence 112222 333332 2357899999999997443333 22222 22222 455666655543
No 143
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.37 E-value=2.4e-12 Score=108.69 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=41.8
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.+.++||||.... ..+...+++.+|+++++++..+...... .+...+.... .+.|+++|+||+
T Consensus 49 ~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 114 (171)
T cd00157 49 NLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKI 114 (171)
T ss_pred EEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccH
Confidence 6889999997542 1223345688998877765543211111 1222222222 269999999999
Q ss_pred cccCCc
Q 017631 217 DLMDKG 222 (368)
Q Consensus 217 D~~~~~ 222 (368)
|+.++.
T Consensus 115 Dl~~~~ 120 (171)
T cd00157 115 DLRDDE 120 (171)
T ss_pred Hhhhch
Confidence 998654
No 144
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.36 E-value=7.9e-12 Score=108.55 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=43.5
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH----HHHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV----KLSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~----~l~~~~~~~~~~~i~Vlt 214 (368)
..+.|+||||.... ..+...|+..+|++|+|++... ...-.... .+.......+.|+++|+|
T Consensus 47 ~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYSF-------------PAMRKLSIQNSDAFALVYAVDD-PESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchhh-------------hHHHHHHhhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 36889999997541 3345668899998877665433 21112121 122222335789999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+...
T Consensus 113 K~Dl~~~ 119 (198)
T cd04147 113 KADSLEE 119 (198)
T ss_pred ccccccc
Confidence 9999753
No 145
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.36 E-value=8.6e-12 Score=104.39 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=44.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh-C---CCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV-D---PTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~-~---~~~~~~i~Vl 213 (368)
...+.++||||... +..+...|++++|++++|++..+.. .-......+..+ . ....|+++|.
T Consensus 43 ~~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 34689999999843 2456678999999888776654422 112222222222 1 1357999999
Q ss_pred ccCcccCC
Q 017631 214 TKLDLMDK 221 (368)
Q Consensus 214 tK~D~~~~ 221 (368)
||.|+.+.
T Consensus 109 NK~Dl~~~ 116 (159)
T cd04150 109 NKQDLPNA 116 (159)
T ss_pred ECCCCCCC
Confidence 99998643
No 146
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.36 E-value=9.2e-12 Score=124.01 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=91.6
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 34 WEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 34 ~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
....|.|+++|+.++|||||+++|.+..+.....+..|....
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig-------------------------------------- 125 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIG-------------------------------------- 125 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecce--------------------------------------
Confidence 345699999999999999999999988763222111111100
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
...+..++...++||||||..+. ..+..+++..+|.+|+|+ ++..... .
T Consensus 126 ----------------~~~v~~~~~~~i~~iDTPGhe~F-------------~~~r~rga~~aDiaILVV-da~dgv~-~ 174 (587)
T TIGR00487 126 ----------------AYHVENEDGKMITFLDTPGHEAF-------------TSMRARGAKVTDIVVLVV-AADDGVM-P 174 (587)
T ss_pred ----------------EEEEEECCCcEEEEEECCCCcch-------------hhHHHhhhccCCEEEEEE-ECCCCCC-H
Confidence 00122222237999999997542 344567788999887766 4443332 3
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc-chHHHhhhCCC-cc----CCCCeEEEEeCCccccccCccHH
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG-TNALDILEGRS-YP----LQHPWVGIVNRSQADINKNVDMI 258 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~-~~~~~~~~~~~-~~----~~~g~~~v~~~s~~~~~~~~~~~ 258 (368)
.....+..+...+.|+++++||+|+.... ..+...+.... .. ....+++++..++.++..+++.+
T Consensus 175 qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 175 QTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred hHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 33344555555678999999999996422 12233322111 11 11235666666666665554443
No 147
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.36 E-value=8.3e-12 Score=107.87 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=56.0
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhC--CCCCceEEeeccCc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVD--PTGERTFGVLTKLD 217 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~--~~~~~~i~VltK~D 217 (368)
.+.++||||.... ..+...|+..+|+++++++..+. ..-.....++..+. ..+.|+++|.||+|
T Consensus 51 ~l~i~D~~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~-~s~~~~~~~~~~i~~~~~~~piilv~nK~D 116 (193)
T cd04118 51 TLGIWDTAGSERY-------------EAMSRIYYRGAKAAIVCYDLTDS-SSFERAKFWVKELQNLEEHCKIYLCGTKSD 116 (193)
T ss_pred EEEEEECCCchhh-------------hhhhHhhcCCCCEEEEEEECCCH-HHHHHHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 5779999997431 34456678899987766654332 11111112233322 12589999999999
Q ss_pred ccCCcc---hH-HHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 218 LMDKGT---NA-LDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 218 ~~~~~~---~~-~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
+.+... .+ ..............++.+...+..++..++..+..
T Consensus 117 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 117 LIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred ccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 864321 10 00011001112234566666665555554444443
No 148
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.35 E-value=1e-11 Score=106.65 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=68.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|+|+|++|+|||||++++.+..+ +... .|+......
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~~~~------------------------------------- 38 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFENYV------------------------------------- 38 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeeeeeE-------------------------------------
Confidence 689999999999999999998875 3221 121110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH----
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---- 194 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---- 194 (368)
..+.........+.|+||||... +..+...+++++|++|+|++..+. .+-..
T Consensus 39 ----------~~i~~~~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~ 94 (187)
T cd04132 39 ----------TNIQGPNGKIIELALWDTAGQEE-------------YDRLRPLSYPDVDVLLICYAVDNP-TSLDNVEDK 94 (187)
T ss_pred ----------EEEEecCCcEEEEEEEECCCchh-------------HHHHHHHhCCCCCEEEEEEECCCH-HHHHHHHHH
Confidence 00001111233688999999632 244556688999988766654332 11111
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+....... ..+.|+++|.||.|+...
T Consensus 95 ~~~~~~~~-~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 95 WFPEVNHF-CPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHHHHHh-CCCCCEEEEEeChhhhhC
Confidence 22122222 236899999999998753
No 149
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.35 E-value=3.2e-12 Score=108.38 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=42.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch--HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||.... ..+...+++.+|++|++++..+.. +..- .+...+.... ...|+++|.||
T Consensus 46 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCccc-------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecC
Confidence 36889999997431 234456788999887776543321 1111 1222222222 36899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+...
T Consensus 112 ~Dl~~~ 117 (174)
T smart00174 112 LDLRED 117 (174)
T ss_pred hhhhhC
Confidence 999754
No 150
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.35 E-value=1.7e-11 Score=104.96 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=43.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh-CC---CCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV-DP---TGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~Vlt 214 (368)
..+.++||||... ...+...|++.+|++|+|++.++... -......+..+ .. ...|+++|.|
T Consensus 61 ~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQDK-------------LRPLWRHYYQNTNGLIFVVDSNDRER-IGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 4789999999743 25567889999998887766543221 11122222222 21 3578999999
Q ss_pred cCcccC
Q 017631 215 KLDLMD 220 (368)
Q Consensus 215 K~D~~~ 220 (368)
|.|+..
T Consensus 127 K~Dl~~ 132 (182)
T PTZ00133 127 KQDLPN 132 (182)
T ss_pred CCCCCC
Confidence 999864
No 151
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.34 E-value=1e-11 Score=125.56 Aligned_cols=160 Identities=17% Similarity=0.264 Sum_probs=93.4
Q ss_pred ccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHH
Q 017631 33 LWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQE 112 (368)
Q Consensus 33 ~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 112 (368)
+....|.|+|+|+.++|||||+++|.+..+.....+..|...
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i-------------------------------------- 281 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKI-------------------------------------- 281 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccccc--------------------------------------
Confidence 344679999999999999999999998765211111111100
Q ss_pred HHhhhhCCCCCCCCCceEEEEec-CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc
Q 017631 113 ETDRVTGKSKQISPVPIHLSIYS-PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA 191 (368)
Q Consensus 113 ~~~~~~~~~~~~s~~~i~i~i~~-~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~ 191 (368)
. ...+.+.. .....++||||||... +..+..+++..+|++||||. +.....
T Consensus 282 ------------~--~~~v~~~~~~~~~kItfiDTPGhe~-------------F~~mr~rg~~~aDiaILVVD-A~dGv~ 333 (742)
T CHL00189 282 ------------G--AYEVEFEYKDENQKIVFLDTPGHEA-------------FSSMRSRGANVTDIAILIIA-ADDGVK 333 (742)
T ss_pred ------------c--eEEEEEEecCCceEEEEEECCcHHH-------------HHHHHHHHHHHCCEEEEEEE-CcCCCC
Confidence 0 00111111 1235799999999732 35566778899998877764 443332
Q ss_pred chHHHHHHHhhCCCCCceEEeeccCcccCCcc-hHHHhhhCC-CccC----CCCeEEEEeCCccccccCccHHH
Q 017631 192 TSDAVKLSREVDPTGERTFGVLTKLDLMDKGT-NALDILEGR-SYPL----QHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~-~~~~~~~~~-~~~~----~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
. .....+..+...+.|+|+|+||+|+..... .+...+... .... ..++++++..++.++..+++.+.
T Consensus 334 ~-QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 334 P-QTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred h-hhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 2 333344555666899999999999975321 222222211 0111 13456666666666665555443
No 152
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.34 E-value=1.4e-11 Score=104.79 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=44.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh-C---CCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV-D---PTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~-~---~~~~~~i~Vlt 214 (368)
..+.++||||... ...+...|++++|++|+|++.++.+ .-......+..+ . ..+.|+++|.|
T Consensus 57 ~~l~l~D~~G~~~-------------~~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQDK-------------IRPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 4688999999743 2556788899999888776654432 112222222222 1 23578999999
Q ss_pred cCcccC
Q 017631 215 KLDLMD 220 (368)
Q Consensus 215 K~D~~~ 220 (368)
|.|+..
T Consensus 123 K~Dl~~ 128 (175)
T smart00177 123 KQDLPD 128 (175)
T ss_pred CcCccc
Confidence 999864
No 153
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.34 E-value=2.2e-11 Score=107.53 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=57.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc-CCCeEEEEEeeCCCcccch---HHHHHHHhhC-CCCCceEEee
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE-KPNCLILAITPANQDLATS---DAVKLSREVD-PTGERTFGVL 213 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~iil~v~~~~~~~~~~---~~~~l~~~~~-~~~~~~i~Vl 213 (368)
..+.++||||... .+...++. .+|++++|++..+.. .-. .+...+.... ..+.|+++|.
T Consensus 50 ~~l~i~Dt~G~~~---------------~~~~~~~~~~ad~iilV~d~td~~-S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 50 STLVVIDHWEQEM---------------WTEDSCMQYQGDAFVVVYSVTDRS-SFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEEEEEeCCCcch---------------HHHhHHhhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4688999999851 01123444 899887666543321 111 2222222222 2468999999
Q ss_pred ccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 214 TKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 214 tK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
||+|+........+............|+.+......+++++++.+....
T Consensus 114 NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 114 NKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999875432111111100111234566676666666665555554443
No 154
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.34 E-value=1.1e-11 Score=104.57 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||.... ..+...++..+|++|+|++..+ ...-+. +...+..... ..|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFDVTS-RVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 46889999997432 2234567889998887765433 222122 2222333333 6999999999
Q ss_pred CcccCCcch--HHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 216 LDLMDKGTN--ALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 216 ~D~~~~~~~--~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
+|+...... ..+..+ .....++.+.+.+..++++.+..+.
T Consensus 114 ~Dl~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 114 VDIKDRKVKAKQITFHR----KKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred hhcccccCCHHHHHHHH----HcCCEEEEEeCCCCCChHHHHHHHH
Confidence 999733211 111111 1234567777766665555444443
No 155
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.33 E-value=6.7e-12 Score=108.40 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=74.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..|+++|..++|||||+++|++..- ..+... .+... + |... .+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~-~~g~~~~~~~~~----~----------------------d~~~--------~E- 46 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA-KKGGAKFKKYDE----I----------------------DKAP--------EE- 46 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-hccccccccccc----c----------------------cCCh--------hh-
Confidence 4699999999999999999997521 000000 00000 0 0000 01
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
..++.+-+...+.+. .....+++|||||+.+ +...+...+..+|+++++|. +..+...+ ..
T Consensus 47 ---~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~ilVvd-a~~g~~~~-~~ 107 (195)
T cd01884 47 ---KARGITINTAHVEYE-TANRHYAHVDCPGHAD-------------YIKNMITGAAQMDGAILVVS-ATDGPMPQ-TR 107 (195)
T ss_pred ---hhcCccEEeeeeEec-CCCeEEEEEECcCHHH-------------HHHHHHHHhhhCCEEEEEEE-CCCCCcHH-HH
Confidence 123334333333332 3556899999999843 13334666789997776554 44444333 33
Q ss_pred HHHHhhCCCCCc-eEEeeccCcccCC
Q 017631 197 KLSREVDPTGER-TFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~~~~~~~-~i~VltK~D~~~~ 221 (368)
.++..+...+.| +|+|+||+|+...
T Consensus 108 ~~~~~~~~~~~~~iIvviNK~D~~~~ 133 (195)
T cd01884 108 EHLLLARQVGVPYIVVFLNKADMVDD 133 (195)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCCCc
Confidence 455556666666 7799999999743
No 156
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.33 E-value=1.7e-11 Score=105.47 Aligned_cols=103 Identities=23% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.|+||||... +..+...|++.+|++++|++..+. .+-. .+...+....+ +.|+++|.||
T Consensus 55 ~~l~iwDt~G~~~-------------~~~l~~~~~~~ad~illVfD~t~~-~Sf~~~~~w~~~i~~~~~-~~piilVGNK 119 (189)
T cd04121 55 VKLQLWDTSGQGR-------------FCTIFRSYSRGAQGIILVYDITNR-WSFDGIDRWIKEIDEHAP-GVPKILVGNR 119 (189)
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 4688999999843 256677899999988777654432 1122 22223333333 6899999999
Q ss_pred CcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 216 LDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 216 ~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
.|+..... +...+.+ .....|+.+.+..+.+++..+..+..
T Consensus 120 ~DL~~~~~v~~~~~~~~a~----~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 120 LHLAFKRQVATEQAQAYAE----RNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred ccchhccCCCHHHHHHHHH----HcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99964321 2222222 22345777777766666555555443
No 157
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.33 E-value=5.6e-11 Score=113.13 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=30.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEE
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLV 76 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~ 76 (368)
.+|++||.+|+|||||+|+|++..+.......||..|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999988633344457766644
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.32 E-value=9.4e-12 Score=107.53 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...+++|||||... . ..........+|+++++++. ......+.. ..+......+.|+++|+||+|
T Consensus 67 ~~~~~i~DtpG~~~---------~----~~~~~~~~~~~d~vi~VvD~-~~~~~~~~~-~~~~~~~~~~~~~iiv~NK~D 131 (192)
T cd01889 67 NLQITLVDCPGHAS---------L----IRTIIGGAQIIDLMLLVVDA-TKGIQTQTA-ECLVIGEILCKKLIVVLNKID 131 (192)
T ss_pred CceEEEEECCCcHH---------H----HHHHHHHHhhCCEEEEEEEC-CCCccHHHH-HHHHHHHHcCCCEEEEEECcc
Confidence 45899999999832 1 12223445678977766654 332222221 111122223679999999999
Q ss_pred ccCC
Q 017631 218 LMDK 221 (368)
Q Consensus 218 ~~~~ 221 (368)
+...
T Consensus 132 l~~~ 135 (192)
T cd01889 132 LIPE 135 (192)
T ss_pred cCCH
Confidence 9843
No 159
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.32 E-value=8.9e-12 Score=109.96 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=47.8
Q ss_pred EecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceE
Q 017631 133 IYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLATSDAVKLSREVDPTGERTF 210 (368)
Q Consensus 133 i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i 210 (368)
+.......++||||||..+. ... +...+ ..+|.+++++ ++..+...+ ...++..+...+.|++
T Consensus 78 ~~~~~~~~i~liDtpG~~~~------------~~~-~~~~~~~~~~D~~llVv-da~~g~~~~-d~~~l~~l~~~~ip~i 142 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERY------------LKT-TLFGLTGYAPDYAMLVV-AANAGIIGM-TKEHLGLALALNIPVF 142 (224)
T ss_pred eeeeCCcEEEEEECCCcHHH------------HHH-HHHhhcccCCCEEEEEE-ECCCCCcHH-HHHHHHHHHHcCCCEE
Confidence 33445568999999997431 122 23333 3689766555 555544433 3446666777789999
Q ss_pred EeeccCcccCC
Q 017631 211 GVLTKLDLMDK 221 (368)
Q Consensus 211 ~VltK~D~~~~ 221 (368)
+|+||+|+.+.
T Consensus 143 vvvNK~D~~~~ 153 (224)
T cd04165 143 VVVTKIDLAPA 153 (224)
T ss_pred EEEECccccCH
Confidence 99999999754
No 160
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.32 E-value=4e-11 Score=102.56 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=44.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh-C---CCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV-D---PTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~-~---~~~~~~i~Vlt 214 (368)
..+.|+||||... +..+...|++++|++|+|++..+.+ .-......+..+ . ....|+++|.|
T Consensus 61 ~~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V~D~s~~~-s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 4688999999632 2567788999999888776654322 112222222222 1 13589999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|.|+...
T Consensus 127 K~Dl~~~ 133 (181)
T PLN00223 127 KQDLPNA 133 (181)
T ss_pred CCCCCCC
Confidence 9998654
No 161
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.32 E-value=2.6e-11 Score=100.18 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=25.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSG 68 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~ 68 (368)
++|+++|.+|+|||||+|+|++.. +|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~ 31 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK 31 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC
Confidence 579999999999999999999988 455443
No 162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.32 E-value=4.2e-11 Score=100.73 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=69.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+++|++|+|||||++++.+..+ +....++....
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~-------------------------------------------- 35 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFN-------------------------------------------- 35 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccccccCCcc--------------------------------------------
Confidence 589999999999999999998764 22111111000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL 198 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l 198 (368)
. +.+. .....+.++||||... +..+...|++++|++|+|++..+.. .-......
T Consensus 36 ---------~--~~i~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~ 89 (164)
T cd04162 36 ---------S--VAIP-TQDAIMELLEIGGSQN-------------LRKYWKRYLSGSQGLIFVVDSADSE-RLPLARQE 89 (164)
T ss_pred ---------e--EEEe-eCCeEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 0 1121 1234789999999743 1455678899999888777654421 11122222
Q ss_pred HHhh--CCCCCceEEeeccCcccCC
Q 017631 199 SREV--DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 199 ~~~~--~~~~~~~i~VltK~D~~~~ 221 (368)
+..+ ...+.|+++|.||.|+...
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 2222 1247899999999998644
No 163
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.32 E-value=3.2e-11 Score=102.19 Aligned_cols=115 Identities=23% Similarity=0.378 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-.+|+++|++|||||||+++|.|..+-.. .|+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-------~~t~--------------------------------------- 46 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI-------TPTQ--------------------------------------- 46 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc-------CCCC---------------------------------------
Confidence 357899999999999999999999754110 1100
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
++. ... +.. ....+.++|+||... +...+..+++.+|+++++++..+...-..
T Consensus 47 -------g~~--~~~--i~~-~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~ 101 (173)
T cd04155 47 -------GFN--IKT--VQS-DGFKLNVWDIGGQRA-------------IRPYWRNYFENTDCLIYVIDSADKKRLEEAG 101 (173)
T ss_pred -------Ccc--eEE--EEE-CCEEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHH
Confidence 000 000 111 234688999999743 24456778899998777665443211111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
....+.+.....+.|+++++||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 1111222223346899999999999754
No 164
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.32 E-value=8.5e-12 Score=106.16 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=70.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-+|+|+|+.|+|||||++++.+..| |....+.......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~----------------------------------------- 39 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYA----------------------------------------- 39 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeE-----------------------------------------
Confidence 3699999999999999999998775 3222111111000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch--H
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS--D 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~--~ 194 (368)
..+.+ ......+.|+||||.... ..+...|++++|++|+|++..+.. +..- .
T Consensus 40 -----------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~ 94 (175)
T cd01874 40 -----------VTVMI-GGEPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 94 (175)
T ss_pred -----------EEEEE-CCEEEEEEEEECCCccch-------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHH
Confidence 01111 112246889999998542 334456889999888777554431 1111 1
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...++...+ ..|+++|.||+|+.+.
T Consensus 95 w~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 95 WVPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 3323333333 5899999999998643
No 165
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.32 E-value=2.3e-11 Score=121.64 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=62.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCc-eEEeeccCc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER-TFGVLTKLD 217 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~-~i~VltK~D 217 (368)
..+++|||||... +......++.++|++++||+ ++.+...+.. ..+..+...+.+ +++|+||+|
T Consensus 50 ~~v~~iDtPGhe~-------------f~~~~~~g~~~aD~aILVVD-a~~G~~~qT~-ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHEK-------------FISNAIAGGGGIDAALLVVD-ADEGVMTQTG-EHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHHH-------------HHHHHHhhhccCCEEEEEEE-CCCCCcHHHH-HHHHHHHHcCCCeEEEEEECCC
Confidence 5789999999622 23445677889997776654 4443333322 222333344666 999999999
Q ss_pred ccCCcc------hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHH
Q 017631 218 LMDKGT------NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAAR 261 (368)
Q Consensus 218 ~~~~~~------~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~ 261 (368)
+.++.. ++.+++..........+++++..++.++......+...
T Consensus 115 lv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 115 RVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 986432 11222221111113456777777776666555554443
No 166
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=2.1e-11 Score=103.12 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
....|+++|++|+|||||++++++..+-|....+++.......
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~------------------------------------- 45 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVN------------------------------------- 45 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEE-------------------------------------
Confidence 4567999999999999999999998862122212111110000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.+.+. .....+.++|++|.... ..+...|+.++|++++|++..+ ...-...
T Consensus 46 --------------~~~~~-~~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d~~~-~~s~~~~ 96 (169)
T cd01892 46 --------------TVEVY-GQEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYDSSD-PKSFSYC 96 (169)
T ss_pred --------------EEEEC-CeEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEeCCC-HHHHHHH
Confidence 01111 11236788999997542 2344567899998877665433 2111122
Q ss_pred HHHHHhhC-CCCCceEEeeccCcccCC
Q 017631 196 VKLSREVD-PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~-~~~~~~i~VltK~D~~~~ 221 (368)
..+...+. ..+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 97 AEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHHhccCCCCeEEEEEEccccccc
Confidence 23333332 236899999999998643
No 167
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.31 E-value=4.4e-11 Score=118.97 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|.|+++|++|+|||||+|+|.+..+.....+..|+..-.... .. .
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~~--------------------------------~ 49 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-PM--------------------------------D 49 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-ee--------------------------------c
Confidence 46999999999999999999999987644333333331100000 00 0
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
...+. ........++. ...+.++||||||... +..+...++..+|++++|++ +..+...+.
T Consensus 50 ~~~~~---~~~~~~~~~v~-~~~~~l~~iDTpG~e~-------------f~~l~~~~~~~aD~~IlVvD-~~~g~~~qt- 110 (590)
T TIGR00491 50 VIEGI---CGDLLKKFKIR-LKIPGLLFIDTPGHEA-------------FTNLRKRGGALADLAILIVD-INEGFKPQT- 110 (590)
T ss_pred ccccc---ccccccccccc-cccCcEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEE-CCcCCCHhH-
Confidence 00000 00000000011 1124699999999733 24455678899997776654 443332332
Q ss_pred HHHHHhhCCCCCceEEeeccCcccC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...+..+...+.|+++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 2333444455789999999999974
No 168
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.31 E-value=3.4e-11 Score=104.93 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=41.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCC-CceEEeeccCc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTG-ERTFGVLTKLD 217 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~-~~~i~VltK~D 217 (368)
..++||||||... +...+...+..+|.+++|++........+. ...+..+...+ .++++|+||+|
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHcCCCcEEEEEEchh
Confidence 5789999999521 233456667789977766654331222221 12222222222 47899999999
Q ss_pred ccCC
Q 017631 218 LMDK 221 (368)
Q Consensus 218 ~~~~ 221 (368)
+..+
T Consensus 149 l~~~ 152 (203)
T cd01888 149 LVKE 152 (203)
T ss_pred ccCH
Confidence 9854
No 169
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.31 E-value=1.2e-11 Score=101.16 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=46.2
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH----HHHHhhCCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV----KLSREVDPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~----~l~~~~~~~~~~~i~Vl 213 (368)
...++++|+||.... ......+++.+|+++++++. +......... .........+.++++|+
T Consensus 44 ~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 44 KVKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYDV-TDRESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred EEEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEEC-cCHHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 347899999998652 22236678899977766544 3322222221 12334455689999999
Q ss_pred ccCcccCCcc
Q 017631 214 TKLDLMDKGT 223 (368)
Q Consensus 214 tK~D~~~~~~ 223 (368)
||+|......
T Consensus 110 nk~D~~~~~~ 119 (157)
T cd00882 110 NKIDLPEERV 119 (157)
T ss_pred eccccccccc
Confidence 9999986543
No 170
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.31 E-value=1.7e-11 Score=107.82 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch-HHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS-DAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~-~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+.||||||.... ..+...|++.+|++|+|++..+.. +..- .+...+........|+|+|.||+
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 44 YNISIWDTAGREQF-------------HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEEeCCCcccc-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 36899999997431 445677899999887766543321 1111 11111222233457899999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9975
No 171
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.31 E-value=3.9e-11 Score=107.54 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=58.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh------------CCCC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV------------DPTG 206 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~------------~~~~ 206 (368)
..+.|+||||.... ..+...|+..+|++|+|++..+.+ .-+....+..++ ....
T Consensus 48 ~~l~I~Dt~G~~~~-------------~~~~~~~~~~ad~iIlVfdv~~~~-Sf~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 48 YQLDILDTSGNHPF-------------PAMRRLSILTGDVFILVFSLDNRE-SFEEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhhcccccccccCCC
Confidence 46889999997431 334455788999877665443321 112222222222 1236
Q ss_pred CceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 207 ERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 207 ~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
.|+|+|.||+|+..... ++.+.+.. .....++.+...+..++++.+..+.
T Consensus 114 ~piIivgNK~Dl~~~~~v~~~ei~~~~~~---~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 114 IPMVICGNKADRDFPREVQRDEVEQLVGG---DENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred CcEEEEEECccchhccccCHHHHHHHHHh---cCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 89999999999975322 12222221 1133567777776666655554443
No 172
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.30 E-value=3.3e-11 Score=111.37 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=60.6
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhhC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTG 119 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 119 (368)
|++||.+|+|||||+|+|++..+-......||..|+.-...-... .+... .+....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~----------~~~~r--------------~~~~~~ 56 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVE----------CPCKE--------------LGVSCN 56 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecC----------CCchh--------------hhhhhc
Confidence 589999999999999999998853333335666664322211000 00000 000000
Q ss_pred CCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeC
Q 017631 120 KSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPA 186 (368)
Q Consensus 120 ~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~ 186 (368)
...+ ..+.+....++.++||||+......+ +.+.+....+++++|++++||...
T Consensus 57 ~~~~-------~~~~~~~~v~i~l~D~aGlv~ga~~~------~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 57 PRYG-------KCIDGKRYVPVELIDVAGLVPGAHEG------KGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred cccc-------ccccCcCcceEEEEECCCCCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 0000 00112233469999999998754332 112344566799999888777653
No 173
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.30 E-value=3.2e-11 Score=103.27 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=42.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||+|... +..+...|++++|++++|++..+.. .-. .+...+....+...| ++|.||
T Consensus 49 ~~l~iwDt~G~~~-------------~~~~~~~~~~~a~~iilv~D~t~~~-s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQRE-------------FINMLPLVCNDAVAILFMFDLTRKS-TLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCchh-------------HHHhhHHHCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 4688999999743 2455677899999887776654431 112 233333333344455 788999
Q ss_pred CcccC
Q 017631 216 LDLMD 220 (368)
Q Consensus 216 ~D~~~ 220 (368)
+|+..
T Consensus 114 ~Dl~~ 118 (182)
T cd04128 114 YDLFA 118 (182)
T ss_pred hhccc
Confidence 99963
No 174
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.30 E-value=2.8e-11 Score=118.41 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=76.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.+|+|+|.+|+||||++|+|+|.+++.++.. .+|.....+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 4799999999999999999999987665432 2332221111
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcc---c
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDL---A 191 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~---~ 191 (368)
.......+.+|||||+.+.... +...+.+...+..++. .+|+ ||+|....... .
T Consensus 161 -----------------~~idG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDV-VLlV~RLd~~~~D~e 219 (763)
T TIGR00993 161 -----------------GLVQGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDI-VLYVDRLDMQTRDSN 219 (763)
T ss_pred -----------------EEECCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCE-EEEEEeCCCccccHH
Confidence 0112347999999999885432 2233444555566665 5784 45555533211 1
Q ss_pred chHHHHHHHhhCC--CCCceEEeeccCcccCC
Q 017631 192 TSDAVKLSREVDP--TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 192 ~~~~~~l~~~~~~--~~~~~i~VltK~D~~~~ 221 (368)
...+++.+..+-. .-..+|+|+|++|.+++
T Consensus 220 D~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 220 DLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2223333333332 23789999999999975
No 175
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.29 E-value=1.7e-11 Score=109.12 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....+++|||||..+. ...+..+++.+|.++++++. ..+.. .....+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVvd~-~~g~~-~~~~~~~~~~~~~~~P~iivvNK~ 126 (237)
T cd04168 62 EDTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVISA-VEGVQ-AQTRILWRLLRKLNIPTIIFVNKI 126 (237)
T ss_pred CCEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEEeC-CCCCC-HHHHHHHHHHHHcCCCEEEEEECc
Confidence 4468999999999642 34467788999988776654 33333 233345555555689999999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 127 D~~~ 130 (237)
T cd04168 127 DRAG 130 (237)
T ss_pred cccC
Confidence 9874
No 176
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=7.5e-12 Score=103.62 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..-.|+++|++|+||||||++..-..|- ....+ .+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd-~~YqA----TI---------------------------------------- 55 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFD-NTYQA----TI---------------------------------------- 55 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhc-ccccc----ee----------------------------------------
Confidence 3467999999999999999999987761 11000 00
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc--ccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD--LATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~--~~~~ 193 (368)
+..|-...+ .+. .....|.||||+|. +.++.++-.|++++.++|++.+-++.. ....
T Consensus 56 -----GiDFlskt~--~l~-d~~vrLQlWDTAGQ-------------ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~ 114 (221)
T KOG0094|consen 56 -----GIDFLSKTM--YLE-DRTVRLQLWDTAGQ-------------ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTS 114 (221)
T ss_pred -----eeEEEEEEE--EEc-CcEEEEEEEecccH-------------HHHhhhhhhhccCCeEEEEEEeccccchHHHHH
Confidence 000111111 111 12357899999998 456899999999999777665443321 1122
Q ss_pred HHHHHHHhhCCC-CCceEEeeccCcccCCcc
Q 017631 194 DAVKLSREVDPT-GERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 194 ~~~~l~~~~~~~-~~~~i~VltK~D~~~~~~ 223 (368)
.|+.-++.-... ...+++|.||.|++++.+
T Consensus 115 kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq 145 (221)
T KOG0094|consen 115 KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ 145 (221)
T ss_pred HHHHHHHhccCCCceEEEEEcccccccchhh
Confidence 333322222222 356778899999998743
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.29 E-value=2.8e-11 Score=123.54 Aligned_cols=156 Identities=17% Similarity=0.253 Sum_probs=92.0
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 34 WEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 34 ~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
....|.|+|+|+.++|||||+++|.+.++.....+..|. +
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~-----~----------------------------------- 326 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQ-----H----------------------------------- 326 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceee-----e-----------------------------------
Confidence 346799999999999999999999887652111111110 0
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
.-...+.. ....++||||||.... ..+..+++..+|++|||| ++..... .
T Consensus 327 --------------iga~~v~~-~~~~ItfiDTPGhe~F-------------~~m~~rga~~aDiaILVV-dAddGv~-~ 376 (787)
T PRK05306 327 --------------IGAYQVET-NGGKITFLDTPGHEAF-------------TAMRARGAQVTDIVVLVV-AADDGVM-P 376 (787)
T ss_pred --------------ccEEEEEE-CCEEEEEEECCCCccc-------------hhHHHhhhhhCCEEEEEE-ECCCCCC-H
Confidence 00001212 2347999999997542 344567788999777766 4443332 3
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc-chHHHhhhC-CCcc----CCCCeEEEEeCCccccccCccHHH
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG-TNALDILEG-RSYP----LQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~-~~~~~~~~~-~~~~----~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
.....+..+...+.|+|+|+||+|+.... ..+...+.. .... ...++++++..++.++..+++.+.
T Consensus 377 qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 377 QTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred hHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 33345555666789999999999996432 122222211 1111 113466777776666666555543
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.28 E-value=1.8e-11 Score=122.54 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=64.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+.++||||..+...... . +.+.+.|+. .+|.++++++..+ . +....+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~s~----~---e~v~~~~l~~~~aDvvI~VvDat~--l--er~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSL----E---EEVARDYLLNEKPDLVVNVVDASN--L--ERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccch----H---HHHHHHHHhhcCCCEEEEEecCCc--c--hhhHHHHHHHHhcCCCEEEEEehh
Confidence 3689999999987543211 1 233455543 7897766655433 1 233445555555689999999999
Q ss_pred cccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 217 DLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 217 D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
|+.+......+. +.....++.+++.+..+++.++++..+.+.+
T Consensus 110 Dl~~~~~i~~d~-~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRIDE-EKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhhH-HHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 997433211111 1012233456778888877777666555543
No 179
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.28 E-value=3.9e-11 Score=101.84 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
..|+|+|++|+|||||++++.+..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999999775
No 180
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.27 E-value=3.8e-11 Score=105.92 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=58.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.++||||.... ..+...|++.+|++|+|++..+.. .-. .+...+.... .+.|+++|.||
T Consensus 62 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilvfD~~~~~-s~~~i~~w~~~i~~~~-~~~piilvgNK 126 (219)
T PLN03071 62 IRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNK 126 (219)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHcccccEEEEEEeCCCHH-HHHHHHHHHHHHHHhC-CCCcEEEEEEc
Confidence 47889999997441 455667899999887776554431 112 2222233332 36899999999
Q ss_pred CcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHH
Q 017631 216 LDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 216 ~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~ 259 (368)
+|+.......... . ........|+.++..++.++.+.+..+.
T Consensus 127 ~Dl~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 127 VDVKNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred hhhhhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 9986432111111 1 0111234566666666665555444443
No 181
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.26 E-value=9.8e-11 Score=104.72 Aligned_cols=88 Identities=27% Similarity=0.363 Sum_probs=59.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
--++++||.||+|||||||+|++.+--+.+...+|..|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~------------------------------------------ 100 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP------------------------------------------ 100 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc------------------------------------------
Confidence 57899999999999999999999874333323333222
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEee
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITP 185 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~ 185 (368)
..| +.......+.|+|+||++.....+... -..+.+.+++||.+|+|++.
T Consensus 101 VPG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIiiVld~ 150 (365)
T COG1163 101 VPG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIIIVLDV 150 (365)
T ss_pred ccc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEEEEec
Confidence 122 333455689999999999877654321 23356678899977766543
No 182
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.25 E-value=1.1e-10 Score=99.20 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch--HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.|+||||... +..+...|++++|++|+|++..+.+ +..- .+...+.... ...|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCchh-------------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeC
Confidence 4688999999643 1345567889999888776654421 1111 1223333333 36899999999
Q ss_pred CcccC
Q 017631 216 LDLMD 220 (368)
Q Consensus 216 ~D~~~ 220 (368)
+|+.+
T Consensus 115 ~Dl~~ 119 (174)
T cd01871 115 LDLRD 119 (174)
T ss_pred hhhcc
Confidence 99864
No 183
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.25 E-value=2.9e-11 Score=107.79 Aligned_cols=145 Identities=15% Similarity=0.200 Sum_probs=97.6
Q ss_pred HHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCC
Q 017631 17 ACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLP 96 (368)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~ 96 (368)
.+.++.... ..+.+....+.|.|+|||.+|||||||+++|++..+.|.+.-..|-.||.-.
T Consensus 159 eL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~------------------ 219 (410)
T KOG0410|consen 159 ELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS------------------ 219 (410)
T ss_pred HHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhh------------------
Confidence 344444433 3345556678999999999999999999999999998988877777662111
Q ss_pred CCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCC
Q 017631 97 KKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKP 176 (368)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
..-|....+.+.||-||.+. -+..+.+.++. +...+.++
T Consensus 220 ------------------------------------a~Lpsg~~vlltDTvGFisd----LP~~LvaAF~A-TLeeVaea 258 (410)
T KOG0410|consen 220 ------------------------------------AHLPSGNFVLLTDTVGFISD----LPIQLVAAFQA-TLEEVAEA 258 (410)
T ss_pred ------------------------------------ccCCCCcEEEEeechhhhhh----CcHHHHHHHHH-HHHHHhhc
Confidence 11234456889999999983 34446666655 46678899
Q ss_pred CeEEEEEeeCCCcccchH--HHHHHHhhCCC----CCceEEeeccCcccCC
Q 017631 177 NCLILAITPANQDLATSD--AVKLSREVDPT----GERTFGVLTKLDLMDK 221 (368)
Q Consensus 177 d~iil~v~~~~~~~~~~~--~~~l~~~~~~~----~~~~i~VltK~D~~~~ 221 (368)
|.++.+++.+...+..+. .+..+..+.-. ..+++-|-||+|..+.
T Consensus 259 dlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 259 DLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred ceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 988888877666555543 22333444321 2346677788887643
No 184
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.25 E-value=3e-11 Score=104.12 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cccch--HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DLATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.|+||||.... ..+...|+..+|++|+|.+-.+. .+... .+...+.... .+.|+++|.||
T Consensus 48 ~~l~i~Dt~G~~~~-------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEEF-------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChhc-------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46889999997431 23345678899988877654332 12111 1333333322 26899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+...
T Consensus 114 ~Dl~~~ 119 (189)
T cd04134 114 CDLREA 119 (189)
T ss_pred hhhccC
Confidence 999754
No 185
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.25 E-value=9.1e-11 Score=103.87 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.-.|++||+.++|||||++.+++..| +... .|+....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi~~~------------------------------------- 49 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTVFEN------------------------------------- 49 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCceeee-------------------------------------
Confidence 35799999999999999999998875 3221 1111000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--h
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--S 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~ 193 (368)
+ ...+.+ ......+.||||||... +..+...|++++|++|+|.+..+.. +.. .
T Consensus 50 -------~---~~~i~~-~~~~v~l~iwDTaG~e~-------------~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~ 105 (232)
T cd04174 50 -------Y---TAGLET-EEQRVELSLWDTSGSPY-------------YDNVRPLCYSDSDAVLLCFDISRPETVDSALK 105 (232)
T ss_pred -------e---EEEEEE-CCEEEEEEEEeCCCchh-------------hHHHHHHHcCCCcEEEEEEECCChHHHHHHHH
Confidence 0 000111 11234688999999632 2456677999999888776554432 111 2
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
.|...+....+ ..|+++|.||+|+..
T Consensus 106 ~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 106 KWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHhCC-CCCEEEEEECccccc
Confidence 23333444333 578999999999853
No 186
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.25 E-value=4.4e-11 Score=101.46 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--hHHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--SDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.+|||||.... ..+...|++.+|++|++++..+.. +.. ..+...+.... .+.|+++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 36789999998442 223345788999887766543321 111 11222222222 35899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 999753
No 187
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.25 E-value=8.7e-11 Score=99.55 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=41.4
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--hHHHHHHHhhCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--SDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.+.++||||..... .+...++..+|++++|+...+.. +.. ..+...+... ..+.|+++|.||+
T Consensus 49 ~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~ 114 (174)
T cd04135 49 LLGLYDTAGQEDYD-------------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQI 114 (174)
T ss_pred EEEEEeCCCccccc-------------ccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEch
Confidence 57899999975421 22345678999777766443321 111 1122233333 4578999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+.+.
T Consensus 115 Dl~~~ 119 (174)
T cd04135 115 DLRDD 119 (174)
T ss_pred hhhcC
Confidence 98643
No 188
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.24 E-value=3e-11 Score=109.41 Aligned_cols=136 Identities=16% Similarity=0.232 Sum_probs=77.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
..|+++|+.|+|||||+|+|+... +...+...+-. .+ ..+....|+.... +
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~v~~-~~-------------~~~~t~~D~~~~e--------~- 53 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAGAVKA-RK-------------SRKHATSDWMEIE--------K- 53 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCceecc-cc-------------cCCCccCCCcHHH--------H-
Confidence 469999999999999999998754 22222111000 00 0011122221111 1
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
.++++-..-.+.+ .+....+.||||||..+. ...+..+++.+|++|+|++. ...... ....
T Consensus 54 ---~rg~si~~~~~~~-~~~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvda-~~g~~~-~~~~ 114 (267)
T cd04169 54 ---QRGISVTSSVMQF-EYRDCVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDA-AKGVEP-QTRK 114 (267)
T ss_pred ---hCCCCeEEEEEEE-eeCCEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEEC-CCCccH-HHHH
Confidence 1122222222222 234568999999998541 23356678899988776654 333332 2233
Q ss_pred HHHhhCCCCCceEEeeccCcccCC
Q 017631 198 LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+++.....+.|+++++||+|....
T Consensus 115 i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 115 LFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHhcCCCEEEEEECCccCCC
Confidence 555555567899999999998644
No 189
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.24 E-value=8.7e-11 Score=102.35 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCC-CeEEEEEeeCCCcccchHHHH----HHHh--hCCCCCceEE
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKP-NCLILAITPANQDLATSDAVK----LSRE--VDPTGERTFG 211 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~iil~v~~~~~~~~~~~~~~----l~~~--~~~~~~~~i~ 211 (368)
..+.||||||... +......|++.+ +++|+++++....-...+... ++.. ....+.|+++
T Consensus 48 ~~~~l~D~pG~~~-------------~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvli 114 (203)
T cd04105 48 KKFRLVDVPGHPK-------------LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLI 114 (203)
T ss_pred ceEEEEECCCCHH-------------HHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 4688999999854 245557788888 988877766553111111111 1111 1224789999
Q ss_pred eeccCcccCC
Q 017631 212 VLTKLDLMDK 221 (368)
Q Consensus 212 VltK~D~~~~ 221 (368)
|.||+|+...
T Consensus 115 v~NK~Dl~~a 124 (203)
T cd04105 115 ACNKQDLFTA 124 (203)
T ss_pred Eecchhhccc
Confidence 9999998743
No 190
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.24 E-value=5.4e-11 Score=108.27 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=48.2
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....+++|||||..+. ...+..++..+|.+++++.. ...... ....+++.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i~Vvd~-~~g~~~-~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 62 KGHKINLIDTPGYADF-------------VGETRAALRAADAALVVVSA-QSGVEV-GTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred CCEEEEEEECcCHHHH-------------HHHHHHHHHHCCEEEEEEeC-CCCCCH-HHHHHHHHHHHcCCCEEEEEECC
Confidence 4467999999998541 34467788899977766654 333222 23345555666688999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|....
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 98854
No 191
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.24 E-value=4.7e-11 Score=101.53 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=71.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|+++|+.++|||||+.++....| +....++......
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~------------------------------------------ 39 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS------------------------------------------ 39 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeE------------------------------------------
Confidence 589999999999999999998775 3222111110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cccc--hHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DLAT--SDA 195 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~~--~~~ 195 (368)
..+.+ ......+.|+||+|.... ..+...|++++|++|+|.+-.+. .+.. ..|
T Consensus 40 ----------~~~~~-~~~~v~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 40 ----------ANVSV-DGNTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred ----------EEEEE-CCEEEEEEEEECCCCccc-------------cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 01111 112347899999997542 34456689999988877654433 2211 123
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
...++...+ ..|+++|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 333343333 6899999999999643
No 192
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.24 E-value=6.3e-11 Score=101.34 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=71.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
..|+++|+.++|||||++++.+..| +....++. .. .+
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~-~~---~~-------------------------------------- 42 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTV-FE---NY-------------------------------------- 42 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccCCce-ee---ee--------------------------------------
Confidence 5799999999999999999998875 32211111 00 00
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--hH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--SD 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~~ 194 (368)
...+.+ ......+.|+||+|... +..+...|++++|++|+|.+..+.. +.. ..
T Consensus 43 ----------~~~~~~-~~~~~~l~iwDtaG~e~-------------~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~ 98 (182)
T cd04172 43 ----------TASFEI-DTQRIELSLWDTSGSPY-------------YDNVRPLSYPDSDAVLICFDISRPETLDSVLKK 98 (182)
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCchh-------------hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 001111 12234688999999733 2455667899999888776544331 111 22
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
+...++...+ ..|+++|.||+|+.+
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 3333444444 589999999999864
No 193
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.24 E-value=3.4e-11 Score=108.45 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=92.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-+--|.+||-|||||||||++++..+-=-.+.-.+|..| .
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~P---n------------------------------------- 197 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVP---N------------------------------------- 197 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCccccccC---c-------------------------------------
Confidence 345599999999999999999998772001111233333 1
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc--ch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA--TS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~--~~ 193 (368)
.| .+.+ .....+++-|.||++..++.+.. +. .-..+.++++..++++|+-+..+.. .+
T Consensus 198 --LG----------vV~~--~~~~sfv~ADIPGLIEGAs~G~G--LG----~~FLrHIERt~vL~hviD~s~~~~~dp~~ 257 (369)
T COG0536 198 --LG----------VVRV--DGGESFVVADIPGLIEGASEGVG--LG----LRFLRHIERTRVLLHVIDLSPIDGRDPIE 257 (369)
T ss_pred --cc----------EEEe--cCCCcEEEecCcccccccccCCC--cc----HHHHHHHHhhheeEEEEecCcccCCCHHH
Confidence 11 1112 34457999999999998766422 11 1134556788877777665443321 12
Q ss_pred HHHHHHHhhC-----CCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEE---EEeCCccccccCccHHHHHHHH
Q 017631 194 DAVKLSREVD-----PTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVG---IVNRSQADINKNVDMIAARRRE 264 (368)
Q Consensus 194 ~~~~l~~~~~-----~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~---v~~~s~~~~~~~~~~~~~~~~E 264 (368)
+...+..++. -..++.++|+||+|+..+.+....+.+ ......+|.. ++..+.++++.+...+.....+
T Consensus 258 ~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~--~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 258 DYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKK--ALAEALGWEVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred HHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHH--HHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHH
Confidence 2222333332 236899999999997755443333322 1111223332 4444445555544444444433
No 194
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.23 E-value=8.5e-11 Score=103.35 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...+.||||||..+. ...+..++..+|++++||+. ..+...+ ...+++.+...+.|.++|+||+|
T Consensus 72 ~~~i~iiDTPG~~~f-------------~~~~~~~l~~aD~~ilVvD~-~~g~~~~-t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDF-------------SSEVTAALRLCDGALVVVDA-VEGVCVQ-TETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCcccc-------------HHHHHHHHHhcCeeEEEEEC-CCCCCHH-HHHHHHHHHHcCCCEEEEEECCC
Confidence 457899999999652 44578889999988776654 4443333 34455556556789999999999
Q ss_pred cc
Q 017631 218 LM 219 (368)
Q Consensus 218 ~~ 219 (368)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 195
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.23 E-value=8.5e-11 Score=100.24 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=70.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|+++|+.++|||||++++.+..| |.... |+....
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~-----~t~~~~--------------------------------------- 37 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYV-----PTVFEN--------------------------------------- 37 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcC-----CceEEE---------------------------------------
Confidence 699999999999999999998875 43221 111000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--hHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--SDA 195 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~~~ 195 (368)
+ ...+.+. .....+.|+||||... ...+...|++++|++|+|.+..+.. +.. ..|
T Consensus 38 -----~---~~~~~~~-~~~~~l~iwDt~G~~~-------------~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 38 -----Y---TASFEID-EQRIELSLWDTSGSPY-------------YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred -----E---EEEEEEC-CEEEEEEEEECCCchh-------------hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 0 0001111 1234788999999633 1344566889999887776544321 111 223
Q ss_pred HHHHHhhCCCCCceEEeeccCcccC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...++...+ ..|+++|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 333444444 579999999999864
No 196
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.23 E-value=9.1e-11 Score=117.78 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCc-eEEeec
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER-TFGVLT 214 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~-~i~Vlt 214 (368)
++...+.||||||.-+ +...+...+..+|.+++|| ++..++..+... .+..+...+.+ .++|+|
T Consensus 48 ~~g~~i~~IDtPGhe~-------------fi~~m~~g~~~~D~~lLVV-da~eg~~~qT~e-hl~il~~lgi~~iIVVlN 112 (614)
T PRK10512 48 PDGRVLGFIDVPGHEK-------------FLSNMLAGVGGIDHALLVV-ACDDGVMAQTRE-HLAILQLTGNPMLTVALT 112 (614)
T ss_pred CCCcEEEEEECCCHHH-------------HHHHHHHHhhcCCEEEEEE-ECCCCCcHHHHH-HHHHHHHcCCCeEEEEEE
Confidence 3444689999999732 2233456688999777655 555554444322 33334444555 579999
Q ss_pred cCcccCCcc--h----HHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 215 KLDLMDKGT--N----ALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 215 K~D~~~~~~--~----~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
|+|+.++.. . +.+.+.... ....++++++..++.+++.+.+.+..
T Consensus 113 KiDlv~~~~~~~v~~ei~~~l~~~~-~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 113 KADRVDEARIAEVRRQVKAVLREYG-FAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 999985422 1 111211100 01234566666666666555554443
No 197
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.22 E-value=2.2e-10 Score=98.83 Aligned_cols=116 Identities=20% Similarity=0.211 Sum_probs=70.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
..|+++|+.++|||||+.++....| +... .|+.-..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~~-------------------------------------- 39 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFDN-------------------------------------- 39 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEee--------------------------------------
Confidence 4799999999999999999998775 2211 1111000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch--H
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS--D 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~--~ 194 (368)
+ ...+.+ ......+.|+||||... +..+...|++++|++|+|.+..+.+ +..- .
T Consensus 40 ------~---~~~~~~-~~~~~~l~i~Dt~G~e~-------------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~ 96 (191)
T cd01875 40 ------Y---SAQTAV-DGRTVSLNLWDTAGQEE-------------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHK 96 (191)
T ss_pred ------e---EEEEEE-CCEEEEEEEEECCCchh-------------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 0 000111 12234688999999843 2456677899999888776544332 1111 1
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+.... ...|+++|.||.|+.+.
T Consensus 97 w~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 97 WHPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 222222222 36899999999999643
No 198
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.21 E-value=2.6e-10 Score=100.42 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=69.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|+|||+.++|||||++++++..| |....++......
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~------------------------------------------ 39 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYT------------------------------------------ 39 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceE------------------------------------------
Confidence 689999999999999999998775 4322221110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH----
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---- 194 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---- 194 (368)
..+.+ ......+.||||||... +..+...|++.+|++++|++..+.+ .-+.
T Consensus 40 ----------~~~~~-~~~~v~L~iwDt~G~e~-------------~~~l~~~~~~~~d~illvfdis~~~-Sf~~i~~~ 94 (222)
T cd04173 40 ----------ASFEI-DKRRIELNMWDTSGSSY-------------YDNVRPLAYPDSDAVLICFDISRPE-TLDSVLKK 94 (222)
T ss_pred ----------EEEEE-CCEEEEEEEEeCCCcHH-------------HHHHhHHhccCCCEEEEEEECCCHH-HHHHHHHH
Confidence 01111 12234788999999733 2445567899999887776554431 1111
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+........ .+.|+++|.||+|+...
T Consensus 95 w~~~~~~~~-~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 95 WQGETQEFC-PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHHhhC-CCCCEEEEEECcccccc
Confidence 221222222 35899999999999753
No 199
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.20 E-value=1.4e-10 Score=101.94 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...+.+|||||..+. ...+..++..+|+++++++.. ..... ....+++.+...+.|.++|+||+|
T Consensus 70 ~~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD~~-~~~~~-~~~~~~~~~~~~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVDVV-EGVTS-NTERLIRHAILEGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEECC-CCCCH-HHHHHHHHHHHcCCCEEEEEECcc
Confidence 357899999998541 344677889999887776543 33222 222334444445689999999999
Q ss_pred cc
Q 017631 218 LM 219 (368)
Q Consensus 218 ~~ 219 (368)
++
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 87
No 200
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.20 E-value=2.5e-11 Score=113.85 Aligned_cols=161 Identities=20% Similarity=0.223 Sum_probs=98.8
Q ss_pred hhhhhHHHHHHHHHHHHHhccCC-CCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEe
Q 017631 3 TMESLIGLVNRIQRACTVLGDYG-GDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHK 81 (368)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~ 81 (368)
+.+.+..++.++...++.|..-. -...+|.+....+++.|||.||+||||++|.++-.++ . +..+|.+..
T Consensus 133 Algrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----e-vqpYaFTTk--- 203 (620)
T KOG1490|consen 133 ALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----E-VQPYAFTTK--- 203 (620)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----c-cCCcccccc---
Confidence 34445555555554444443311 2235777778889999999999999999999987664 1 111221111
Q ss_pred cCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhH
Q 017631 82 TEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESV 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~ 161 (368)
-+.+.........+.+|||||+.+.... .
T Consensus 204 ----------------------------------------------sL~vGH~dykYlrwQViDTPGILD~plE-----d 232 (620)
T KOG1490|consen 204 ----------------------------------------------LLLVGHLDYKYLRWQVIDTPGILDRPEE-----D 232 (620)
T ss_pred ----------------------------------------------hhhhhhhhhheeeeeecCCccccCcchh-----h
Confidence 1111122223346789999999885544 3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeeCCC--cccchHHHHHHHhhCCC--CCceEEeeccCcccCCcc
Q 017631 162 VLEIETMVRSYIEKPNCLILAITPANQ--DLATSDAVKLSREVDPT--GERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v~~~~~--~~~~~~~~~l~~~~~~~--~~~~i~VltK~D~~~~~~ 223 (368)
.-.++..+...+.+-.+.||++.+-+. +.+...-..+...++|. .+++|+|+||+|...++.
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc
Confidence 334455555566666667777766544 33334444567777764 688999999999987643
No 201
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.6e-10 Score=96.20 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-+-.|+++|+.|+|||.|+-++.+..+ |-.... |
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~s-T-------------------------------------------- 41 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TESYIS-T-------------------------------------------- 41 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chhhcc-e--------------------------------------------
Confidence 467899999999999999999999875 221110 0
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cccc-h
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DLAT-S 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~~-~ 193 (368)
-++......+++.+.. ..+.+|||.|. +.++.++.+|.+++|.||+|.+-+.. .+.+ .
T Consensus 42 ------IGVDf~~rt~e~~gk~-iKlQIWDTAGQ-------------ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~ 101 (205)
T KOG0084|consen 42 ------IGVDFKIRTVELDGKT-IKLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIFVYDITKQESFNNVK 101 (205)
T ss_pred ------eeeEEEEEEeeecceE-EEEEeeecccc-------------HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHH
Confidence 1111111222233322 37889999998 34578999999999998877654332 1211 2
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.|..-.+.......+.++|.||+|+.+.
T Consensus 102 ~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 102 RWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 3444444444556799999999999865
No 202
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.19 E-value=1.9e-10 Score=115.19 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+..|+++|+.++|||||+++|+... +..++.... .+..|... .++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~~---------------------~~~~D~~~--------~Er 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREMR---------------------EQVLDSMD--------LER 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccccc---------------------ccccCCCh--------HHH
Confidence 4579999999999999999998754 222211100 00000000 011
Q ss_pred hhCCCCCCCCCceEEEEe--cCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 117 VTGKSKQISPVPIHLSIY--SPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~--~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
. .+..+....+.+... ......+.||||||..+. ...+..++..+|++|++++ +......+.
T Consensus 48 e--rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-------------~~~v~~~l~~aD~aILVvD-at~g~~~qt 111 (595)
T TIGR01393 48 E--RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVD-AAQGIEAQT 111 (595)
T ss_pred h--cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEec-CCCCCCHhH
Confidence 1 112222233333332 122357899999999652 4456788999998876664 444443333
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...+.... ..+.++++|+||+|+..
T Consensus 112 ~~~~~~~~-~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 112 LANVYLAL-ENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHHH-HcCCCEEEEEECcCCCc
Confidence 22222222 34678999999999864
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.19 E-value=3.9e-10 Score=109.44 Aligned_cols=83 Identities=11% Similarity=0.199 Sum_probs=47.6
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC--cccchHHHHHH
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ--DLATSDAVKLS 199 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~--~~~~~~~~~l~ 199 (368)
++.+.+.....+.. +...++||||||..+. ...+...+..+|++++|++. +. +...+.. ..+
T Consensus 68 rG~T~d~~~~~~~~-~~~~i~liDtpG~~~~-------------~~~~~~~~~~aD~~ilVvDa-~~~~~~~~~~~-~~~ 131 (425)
T PRK12317 68 RGVTIDLAHKKFET-DKYYFTIVDCPGHRDF-------------VKNMITGASQADAAVLVVAA-DDAGGVMPQTR-EHV 131 (425)
T ss_pred cCccceeeeEEEec-CCeEEEEEECCCcccc-------------hhhHhhchhcCCEEEEEEEc-ccCCCCCcchH-HHH
Confidence 34555554444433 4568999999997331 11223446789977766654 43 3322221 122
Q ss_pred HhhCCCC-CceEEeeccCcccC
Q 017631 200 REVDPTG-ERTFGVLTKLDLMD 220 (368)
Q Consensus 200 ~~~~~~~-~~~i~VltK~D~~~ 220 (368)
..+...+ .++++|+||+|+..
T Consensus 132 ~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 132 FLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHcCCCeEEEEEEcccccc
Confidence 2222334 46899999999975
No 204
>CHL00071 tufA elongation factor Tu
Probab=99.18 E-value=1.1e-10 Score=112.54 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-..|+++|+.++|||||+|+|++..- ..+ .+... .+ . ..|.. . .+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~-~~~----~~~~~--~~----------~---------~~d~~--~------~e 56 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLA-AKG----GAKAK--KY----------D---------EIDSA--P------EE 56 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhC-ccc----ccccc--cc----------c---------cccCC--h------hh
Confidence 345699999999999999999998531 000 00000 00 0 00000 0 01
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+.++++-+.....+ ..+...++||||||..+ +...+...+..+|+++++| ++..+...++
T Consensus 57 ----~~rg~T~~~~~~~~-~~~~~~~~~iDtPGh~~-------------~~~~~~~~~~~~D~~ilVv-da~~g~~~qt- 116 (409)
T CHL00071 57 ----KARGITINTAHVEY-ETENRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVV-SAADGPMPQT- 116 (409)
T ss_pred ----hcCCEeEEccEEEE-ccCCeEEEEEECCChHH-------------HHHHHHHHHHhCCEEEEEE-ECCCCCcHHH-
Confidence 12233333333332 23456789999999632 1223355677899777655 4444444433
Q ss_pred HHHHHhhCCCCCc-eEEeeccCcccCC
Q 017631 196 VKLSREVDPTGER-TFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~-~i~VltK~D~~~~ 221 (368)
...+..+...+.| +|+|+||+|+.+.
T Consensus 117 ~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 117 KEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 3345555556777 6789999999864
No 205
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.17 E-value=1.3e-10 Score=97.17 Aligned_cols=144 Identities=17% Similarity=0.320 Sum_probs=83.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|+|+|+.++|||||++++.+..+ |....+.........
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~---------------------------------------- 39 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSK---------------------------------------- 39 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEE----------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccc----------------------------------------
Confidence 489999999999999999998875 332222111110000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSDAV 196 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~~~ 196 (368)
.+.+ ......+.|+|+||.... ..+...++.++|++|+|.+..+.. +. ...+.
T Consensus 40 -----------~~~~-~~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 40 -----------EVSI-DGKPVNLEIWDTSGQERF-------------DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWL 94 (162)
T ss_dssp -----------EEEE-TTEEEEEEEEEETTSGGG-------------HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH
T ss_pred -----------cccc-cccccccccccccccccc-------------ccccccccccccccccccccccccccccccccc
Confidence 0001 122336899999996431 345567789999887665443321 11 12344
Q ss_pred HHHHhhCCCCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccc
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADIN 252 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~ 252 (368)
..+....+...|+++|.||.|+.+... +..++.. ..+.+|+.+......++.
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAK----ELGVPYFEVSAKNGENVK 150 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHH----HTTSEEEEEBTTTTTTHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHHHHH----HhCCEEEEEECCCCCCHH
Confidence 444555565689999999999986322 1222222 223567777766555443
No 206
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=6.3e-11 Score=98.14 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=90.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-.|+++|+.|+|||||+-++.-.+|- ....++.....-...
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~-e~~e~TIGaaF~tkt-------------------------------------- 46 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFH-ENIEPTIGAAFLTKT-------------------------------------- 46 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccc-cccccccccEEEEEE--------------------------------------
Confidence 46999999999999999999988862 221111111111110
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
+.+ ......+.||||.|.-+ +.+++..|+++++++|+|.+-.+. -+-.....
T Consensus 47 -------------v~~-~~~~ikfeIWDTAGQER-------------y~slapMYyRgA~AAivvYDit~~-~SF~~aK~ 98 (200)
T KOG0092|consen 47 -------------VTV-DDNTIKFEIWDTAGQER-------------YHSLAPMYYRGANAAIVVYDITDE-ESFEKAKN 98 (200)
T ss_pred -------------EEe-CCcEEEEEEEEcCCccc-------------ccccccceecCCcEEEEEEecccH-HHHHHHHH
Confidence 111 12234678999999843 367788999999988876544332 11222333
Q ss_pred HHHhhCCCC---CceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 198 LSREVDPTG---ERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 198 l~~~~~~~~---~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
.++++.... .-+.+|.||+|+..... +...+.+ ..++-|+..+...+.+++..+..+...+
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe----~~gll~~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAE----SQGLLFFETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHH----hcCCEEEEEecccccCHHHHHHHHHHhc
Confidence 444443332 33446899999997432 2233332 2355677888777766555554444443
No 207
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.6e-10 Score=94.73 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=95.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+-.|+++|+.++|||+++-.+....|- +.+..++-
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~-------~~~~sTiG------------------------------------ 46 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFN-------TSFISTIG------------------------------------ 46 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCc-------CCccceEE------------------------------------
Confidence 35778999999999999999999988761 11221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cccc-
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DLAT- 192 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~~- 192 (368)
+....-.+.+.+ ....+.+|||.|.- .+..++.+|++.++.++|+++-++. .+.+
T Consensus 47 ---------IDFk~kti~l~g-~~i~lQiWDtaGQe-------------rf~ti~~sYyrgA~gi~LvyDitne~Sfeni 103 (207)
T KOG0078|consen 47 ---------IDFKIKTIELDG-KKIKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDITNEKSFENI 103 (207)
T ss_pred ---------EEEEEEEEEeCC-eEEEEEEEEcccch-------------hHHHHHHHHHhhcCeeEEEEEccchHHHHHH
Confidence 000111111211 33468899999983 3588999999999999888766554 1111
Q ss_pred hHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCcccccc
Q 017631 193 SDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINK 253 (368)
Q Consensus 193 ~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~ 253 (368)
..|.+.+++..+...+.++|.||+|+..+..--.+.-+.-....+..|+.+++.++.++.+
T Consensus 104 ~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 104 RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 2466666777777899999999999987432111111101122344566676666554443
No 208
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.15 E-value=3.8e-10 Score=113.19 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=89.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|+++|+.++|||||+++|+... +..++... +.+..|... .+
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~---------------------~~~~lD~~~--------~E 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM---------------------KAQVLDSMD--------LE 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc---------------------ccccccCch--------HH
Confidence 45689999999999999999998753 11111100 000000000 01
Q ss_pred hhhCCCCCCCCCceEEEEec--CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYS--PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~--~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
+. ++..+....+.+.... .....++||||||..+. ...+.+++..+|.++++|+. ..+...+
T Consensus 51 re--rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aILVVDa-s~gv~~q 114 (600)
T PRK05433 51 RE--RGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGALLVVDA-SQGVEAQ 114 (600)
T ss_pred hh--cCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEEEEEEC-CCCCCHH
Confidence 11 1122222333333321 22457899999999652 34467788999987766654 4444333
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcc-hHHHhhhCCCccCCCC---eEEEEeCCccccccCccHHH
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGT-NALDILEGRSYPLQHP---WVGIVNRSQADINKNVDMIA 259 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~-~~~~~~~~~~~~~~~g---~~~v~~~s~~~~~~~~~~~~ 259 (368)
... .+..+...+.|+++|+||+|+..... ...+.+.. .++.+ ++.++..+..++..+++.+.
T Consensus 115 t~~-~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~---~lg~~~~~vi~iSAktG~GI~~Ll~~I~ 180 (600)
T PRK05433 115 TLA-NVYLALENDLEIIPVLNKIDLPAADPERVKQEIED---VIGIDASDAVLVSAKTGIGIEEVLEAIV 180 (600)
T ss_pred HHH-HHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHH---HhCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 332 22223334688999999999864321 11112211 11222 45566666565555444443
No 209
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.14 E-value=3.6e-10 Score=105.12 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=86.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-.|+|||+.++|||||+|++++.-++|--.+.-.+. ...+.+
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~--------------------------------------Ra~DEL 59 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKE--------------------------------------RAQDEL 59 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHh--------------------------------------HHHhcc
Confidence 579999999999999999999996665433111000 001111
Q ss_pred hCCC----------CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHH----------------HHHHHHHHH
Q 017631 118 TGKS----------KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVV----------------LEIETMVRS 171 (368)
Q Consensus 118 ~~~~----------~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~----------------~~~~~~~~~ 171 (368)
.... .-+....+++.....-..++.||||+|+......+.-+... +..+-=+++
T Consensus 60 pqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~k 139 (492)
T TIGR02836 60 PQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRK 139 (492)
T ss_pred CcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHH
Confidence 1111 11223344454444444689999999998865544322111 001111566
Q ss_pred hhc-CCCeEEEEEeeCC------CcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 172 YIE-KPNCLILAITPAN------QDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 172 ~~~-~~d~iil~v~~~~------~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+. +++..+++.++++ .++.. ...+++.+++..++|+++|+||.|-..+
T Consensus 140 VI~dhstIgivVtTDgsi~dI~Re~y~~-aEe~~i~eLk~~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 140 VIQEHSTIGVVVTTDGTITDIPREDYVE-AEERVIEELKELNKPFIILLNSTHPYHP 195 (492)
T ss_pred HHHhcCcEEEEEEcCCCccccccccchH-HHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 777 8996665554653 22322 2345788888889999999999995543
No 210
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.14 E-value=5.3e-10 Score=96.99 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.|+||||... +..+...|++++|++|+|++..+. .+-. .|...+.... .+.|+++|.||
T Consensus 44 ~~l~iwDt~G~e~-------------~~~l~~~~~~~ad~~ilV~D~t~~-~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAIIMFDVTAR-VTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCCchh-------------hhhhhHHHhcCCCEEEEEEECCCh-HHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 4788999999843 255667899999988777655432 1112 2333233333 36899999999
Q ss_pred CcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 216 LDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 216 ~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
+|+....-.. +.+. ........|+.+...++.++...+..+....
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9986321111 1111 0112245677777777776666555554433
No 211
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.13 E-value=1.1e-09 Score=101.33 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g 59 (368)
...|.|.|.+|||||||+++|..
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999765
No 212
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.13 E-value=2.3e-10 Score=117.24 Aligned_cols=134 Identities=12% Similarity=0.191 Sum_probs=80.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|+|+|+.++|||||+|+|++.. +...+.. . .. ++....|+... +
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~~~~---~---~~------------~g~~~~D~~~~--------e 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIHKIG---E---VH------------DGAATMDWMEQ--------E 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCccccc---c---cc------------CCccccCCCHH--------H
Confidence 56799999999999999999998643 1111100 0 00 00011111110 1
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ .++++-+.....+.. ....+++|||||..+. ...+..++..+|+++++|+ +..+...+ .
T Consensus 57 ~----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVvd-a~~g~~~~-~ 116 (689)
T TIGR00484 57 K----ERGITITSAATTVFW-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVLD-AVGGVQPQ-S 116 (689)
T ss_pred H----hcCCCEecceEEEEE-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEEe-CCCCCChh-H
Confidence 1 123343333333433 3468999999999652 2236778899997776664 44444333 3
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+++.+...+.|+++|+||+|+...
T Consensus 117 ~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 117 ETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34556666678999999999999854
No 213
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.11 E-value=3.5e-10 Score=102.11 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCccccCcccccccEE
Q 017631 40 VAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLV 76 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~ 76 (368)
|++||.||+|||||+|+|++.+.-+.....||..|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5899999999999999999998733333456666633
No 214
>PRK12739 elongation factor G; Reviewed
Probab=99.10 E-value=4.3e-10 Score=115.21 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|+|+|+.++|||||+|+|+...- ...+.. .. . .+....|+... +
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g------~~~~~~---~v---~------------~~~~~~D~~~~--------E 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTG------KSHKIG---EV---H------------DGAATMDWMEQ--------E 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCC------Cccccc---cc---c------------CCccccCCChh--------H
Confidence 567899999999999999999986421 000000 00 0 00011111110 1
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
..++++-+...+.+.. +...++||||||+.+ +...+..++..+|+++++|+ +..+...++
T Consensus 55 ----~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~-------------f~~e~~~al~~~D~~ilVvD-a~~g~~~qt- 114 (691)
T PRK12739 55 ----QERGITITSAATTCFW-KGHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAVFD-AVSGVEPQS- 114 (691)
T ss_pred ----hhcCCCccceeEEEEE-CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhCeEEEEEe-CCCCCCHHH-
Confidence 1234444444444433 456899999999854 12346788889997776554 555544443
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..++..+...+.|.|+++||+|+...
T Consensus 115 ~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 115 ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34666677778999999999999854
No 215
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.3e-10 Score=89.57 Aligned_cols=121 Identities=18% Similarity=0.307 Sum_probs=88.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-|-.|++||+.|+|||.|+..++.. +||.|++.+-..-.-+..
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmikt------------------------------------ 48 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKT------------------------------------ 48 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEE------------------------------------
Confidence 3678999999999999999999876 468887754333211111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cc-cch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DL-ATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~-~~~ 193 (368)
+++. .....+.||||.|. +.+++++.+|.+.++++||+.+-+.+ .+ ..+
T Consensus 49 ---------------vev~-gekiklqiwdtagq-------------erfrsitqsyyrsahalilvydiscqpsfdclp 99 (213)
T KOG0095|consen 49 ---------------VEVN-GEKIKLQIWDTAGQ-------------ERFRSITQSYYRSAHALILVYDISCQPSFDCLP 99 (213)
T ss_pred ---------------EEEC-CeEEEEEEeeccch-------------HHHHHHHHHHhhhcceEEEEEecccCcchhhhH
Confidence 1121 23346889999997 44689999999999999988764443 22 236
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+|++-++.+.....-.|+|.||+|+.+..
T Consensus 100 ewlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 100 EWLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHHhhcceEEEeeccccchhhhh
Confidence 78877778877777789999999998653
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.10 E-value=7.1e-10 Score=97.84 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=49.3
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC------cccchHH
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ------DLATSDA 195 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~------~~~~~~~ 195 (368)
++.+.+.....+.. ....+++|||||..+. ...+..++..+|++++||+.... ....+ .
T Consensus 61 rg~T~d~~~~~~~~-~~~~i~liDtpG~~~~-------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~-~ 125 (219)
T cd01883 61 RGVTIDVGLAKFET-EKYRFTILDAPGHRDF-------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQ-T 125 (219)
T ss_pred CccCeecceEEEee-CCeEEEEEECCChHHH-------------HHHHHHHhhhCCEEEEEEECCCCccccccccccc-h
Confidence 44555555554433 4568999999997431 22334567889988776655432 11111 1
Q ss_pred HHHHHhhCCCC-CceEEeeccCcccC
Q 017631 196 VKLSREVDPTG-ERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~~-~~~i~VltK~D~~~ 220 (368)
...+......+ .|+++|+||+|+..
T Consensus 126 ~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 126 REHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHHHcCCCeEEEEEEcccccc
Confidence 22222222233 68899999999984
No 217
>PRK00007 elongation factor G; Reviewed
Probab=99.10 E-value=2.3e-10 Score=117.21 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=81.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|+|+|+.++|||||+|+|+...--....+.... +....|+... +
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~------------------------~~~~~D~~~~--------E 56 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHD------------------------GAATMDWMEQ--------E 56 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccC------------------------CcccCCCCHH--------H
Confidence 5679999999999999999999743200000000000 0111111110 1
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
..++++-+...+.+.+ ....++||||||+.+. ..-+...+..+|+++++| ++..+...++
T Consensus 57 ----~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~f-------------~~ev~~al~~~D~~vlVv-da~~g~~~qt- 116 (693)
T PRK00007 57 ----QERGITITSAATTCFW-KDHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVF-DAVGGVEPQS- 116 (693)
T ss_pred ----HhCCCCEeccEEEEEE-CCeEEEEEeCCCcHHH-------------HHHHHHHHHHcCEEEEEE-ECCCCcchhh-
Confidence 1233444444444433 3568999999998541 122567778899777655 4555554444
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..++..+...+.|.++++||+|+...
T Consensus 117 ~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 117 ETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 44677777778999999999999854
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.10 E-value=6.8e-10 Score=110.96 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
+.++|+||||... +..+..+++..+|++++|++ +..+...+ ....+..+...+.|+++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~-------------f~~~~~~~~~~aD~~IlVvD-a~~g~~~q-t~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEA-------------FTNLRKRGGALADIAILVVD-INEGFQPQ-TIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHH-------------HHHHHHHhHhhCCEEEEEEE-CCCCCCHh-HHHHHHHHHHcCCCEEEEEECcCC
Confidence 3589999999843 23445567789997776664 44333333 223334444567899999999998
Q ss_pred c
Q 017631 219 M 219 (368)
Q Consensus 219 ~ 219 (368)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 219
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.09 E-value=1.6e-09 Score=105.88 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCc--ccChHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKK--FTDFSIVRKEIQE 112 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~ 112 (368)
.+...|+++|+.++|||||+++|+... +..++.... .+.+.. ...+.. -.++.-+.+...+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~~-~~~~~~----------~~~g~~~~~~~~a~~~D~~~e 87 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQLA-SLHNDS----------KRHGTQGEKLDLALLVDGLQA 87 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHHH-HHHHHH----------HhcCCCccccchhhhccCChH
Confidence 467899999999999999999999764 211110000 000000 000000 0000000000000
Q ss_pred HHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc
Q 017631 113 ETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT 192 (368)
Q Consensus 113 ~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~ 192 (368)
+ +.++++-+.....+ ..+...++||||||..+ ...++ ...+..+|+++++|+ +..+...
T Consensus 88 --E----r~rgiTid~~~~~~-~~~~~~i~~iDTPGh~~------------f~~~~-~~~l~~aD~allVVD-a~~G~~~ 146 (474)
T PRK05124 88 --E----REQGITIDVAYRYF-STEKRKFIIADTPGHEQ------------YTRNM-ATGASTCDLAILLID-ARKGVLD 146 (474)
T ss_pred --H----hhcCCCeEeeEEEe-ccCCcEEEEEECCCcHH------------HHHHH-HHHHhhCCEEEEEEE-CCCCccc
Confidence 1 12344444433333 34556899999999522 11233 333689997776554 4444433
Q ss_pred h--HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 193 S--DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 ~--~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+ +...++..+. -+++++|+||+|+.+.
T Consensus 147 qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 147 QTRRHSFIATLLG--IKHLVVAVNKMDLVDY 175 (474)
T ss_pred cchHHHHHHHHhC--CCceEEEEEeeccccc
Confidence 2 2333444443 2578999999999853
No 220
>PTZ00258 GTP-binding protein; Provisional
Probab=99.09 E-value=7.6e-10 Score=104.36 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=63.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..-.+|++||.||+|||||+|+|++.+........||+.|..-...-.. .. +..+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d--------------~r---~~~l~------- 74 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPD--------------ER---FDWLC------- 74 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEeccc--------------ch---hhHHH-------
Confidence 3457899999999999999999999886334445677666443321100 00 00000
Q ss_pred hhhhCCCCCCCCCceEEEEecC---CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEee
Q 017631 115 DRVTGKSKQISPVPIHLSIYSP---NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITP 185 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~---~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~ 185 (368)
. +..| -..++.++||||+......+ +.+.+.....++++|+++++|..
T Consensus 75 -~----------------~~~~~~~~~aqi~lvDtpGLv~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 75 -K----------------HFKPKSIVPAQLDITDIAGLVKGASEG------EGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred -H----------------HcCCcccCCCCeEEEECCCcCcCCcch------hHHHHHHHHHHHHCCEEEEEEeC
Confidence 0 1111 11268999999998754432 12234456678899988877764
No 221
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.09 E-value=8.5e-10 Score=106.14 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH--HHHHH
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD--AVKLS 199 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~--~~~l~ 199 (368)
++++-+.....+. +....++||||||..+ .... +...+..+|+++++|+ +..+...+. ...++
T Consensus 64 rgiTid~~~~~~~-~~~~~~~liDtPGh~~------------f~~~-~~~~~~~aD~allVVd-a~~G~~~qt~~~~~~~ 128 (406)
T TIGR02034 64 QGITIDVAYRYFS-TDKRKFIVADTPGHEQ------------YTRN-MATGASTADLAVLLVD-ARKGVLEQTRRHSYIA 128 (406)
T ss_pred CCcCeEeeeEEEc-cCCeEEEEEeCCCHHH------------HHHH-HHHHHhhCCEEEEEEE-CCCCCccccHHHHHHH
Confidence 4455554444443 3456899999999633 1122 2345789997776654 544443332 33344
Q ss_pred HhhCCCCCceEEeeccCcccCC
Q 017631 200 REVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 200 ~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+. ..++++|+||+|+.+.
T Consensus 129 ~~~~--~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 129 SLLG--IRHVVLAVNKMDLVDY 148 (406)
T ss_pred HHcC--CCcEEEEEEecccccc
Confidence 4433 3468899999999853
No 222
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.09 E-value=1.7e-09 Score=93.83 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=44.9
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc--chHHHHHHHhh--------------
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA--TSDAVKLSREV-------------- 202 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~--~~~~~~l~~~~-------------- 202 (368)
..+.|+||+|... +..+...|++++|++|+|.+-.+...- ...|...+...
T Consensus 54 ~~l~IwDtaG~e~-------------~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 54 FFVELWDVGGSES-------------VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEEecCCchh-------------HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 3588999999843 256677899999988877655443111 11233222221
Q ss_pred -----CCCCCceEEeeccCcccCC
Q 017631 203 -----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 203 -----~~~~~~~i~VltK~D~~~~ 221 (368)
.....|+++|.||+|+.+.
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccCCCCceEEEEEECccchhh
Confidence 1235799999999999754
No 223
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.08 E-value=2.2e-10 Score=88.05 Aligned_cols=104 Identities=23% Similarity=0.293 Sum_probs=67.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-+|++||..|+|||||.++|-|...++.....+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAv----------------------------------------------- 34 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAV----------------------------------------------- 34 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhccccee-----------------------------------------------
Confidence 479999999999999999999998755432111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
+...+ -.|||||-+-.. ..+.....-....+|+++ .|.+++...+.-.
T Consensus 35 --------------e~~d~-----~~IDTPGEy~~~---------~~~Y~aL~tt~~dadvi~-~v~~and~~s~f~--- 82 (148)
T COG4917 35 --------------EFNDK-----GDIDTPGEYFEH---------PRWYHALITTLQDADVII-YVHAANDPESRFP--- 82 (148)
T ss_pred --------------eccCc-----cccCCchhhhhh---------hHHHHHHHHHhhccceee-eeecccCccccCC---
Confidence 11111 149999976522 223444455677899655 5556554432211
Q ss_pred HHHhhCCCCCceEEeeccCcccCC
Q 017631 198 LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
....+...+++|+|+||.|+.++
T Consensus 83 -p~f~~~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 83 -PGFLDIGVKKVIGVVTKADLAED 105 (148)
T ss_pred -cccccccccceEEEEecccccch
Confidence 12345556789999999999964
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.07 E-value=8.6e-10 Score=105.82 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=44.2
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceE-Eeecc
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTF-GVLTK 215 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i-~VltK 215 (368)
....++||||||..+ +...+...+..+|.++++++ +......+. .+.+..+...+.|.+ +|+||
T Consensus 73 ~~~~i~~iDtPGh~~-------------f~~~~~~~~~~aD~~llVvd-a~~g~~~qt-~e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 73 ANRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVS-AADGPMPQT-REHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCcEEEEEECCCHHH-------------HHHHHHhhhccCCEEEEEEE-CCCCCchhH-HHHHHHHHHcCCCeEEEEEEe
Confidence 445789999999732 12233456778997776654 444343333 234455555677765 57999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 138 ~Dl~~~ 143 (396)
T PRK12735 138 CDMVDD 143 (396)
T ss_pred cCCcch
Confidence 999853
No 225
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.06 E-value=6e-10 Score=101.39 Aligned_cols=134 Identities=23% Similarity=0.369 Sum_probs=73.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCccc---cc--ccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIV---TR--RPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~---t~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
.|+|||..|+|||||||+|.+..+.+...... .. ..+.+..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~---------------------------------- 51 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEE---------------------------------- 51 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEE----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceee----------------------------------
Confidence 58999999999999999999988765542110 00 1111111
Q ss_pred HhhhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCC-ChhHHHHHHHHHHHhhc-------------CCCe
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQ-PESVVLEIETMVRSYIE-------------KPNC 178 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~d~ 178 (368)
-...+... ...++++|||||+.+.-.... -+.+...+.+.-..|+. +.|+
T Consensus 52 ---------------~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~ 116 (281)
T PF00735_consen 52 ---------------RTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHA 116 (281)
T ss_dssp ---------------EEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEE
T ss_pred ---------------EEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcce
Confidence 00111111 123799999999976433211 11233333333334432 4577
Q ss_pred EEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcc
Q 017631 179 LILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 179 iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~ 223 (368)
+++++.|....+...+. ..++.+.. ..++|-|+.|+|.+.+.+
T Consensus 117 cLYfI~pt~~~L~~~Di-~~mk~Ls~-~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 117 CLYFIPPTGHGLKPLDI-EFMKRLSK-RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp EEEEE-TTSSSS-HHHH-HHHHHHTT-TSEEEEEESTGGGS-HHH
T ss_pred EEEEEcCCCccchHHHH-HHHHHhcc-cccEEeEEecccccCHHH
Confidence 77777776666654444 57788876 588999999999997644
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.06 E-value=7.3e-10 Score=106.22 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.--.|+++|+.++|||||+++|++..- ..+.+...-.. +-+... .+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~-~~g~~~~~~~~-------------------------------~~d~~~--~E 56 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLA-ERGLNQAKDYD-------------------------------SIDAAP--EE 56 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhh-hhccccccchh-------------------------------hhcCCH--HH
Confidence 345699999999999999999997531 10000000000 000000 01
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ .++.+-+...+.+. .....++||||||..+ .+.. +...+..+|++++||+ +..+...+.
T Consensus 57 ~----~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~~------------f~~~-~~~~~~~~d~~llVvd-~~~g~~~~t- 116 (394)
T PRK12736 57 K----ERGITINTAHVEYE-TEKRHYAHVDCPGHAD------------YVKN-MITGAAQMDGAILVVA-ATDGPMPQT- 116 (394)
T ss_pred H----hcCccEEEEeeEec-CCCcEEEEEECCCHHH------------HHHH-HHHHHhhCCEEEEEEE-CCCCCchhH-
Confidence 1 12334344333332 3456789999999632 1122 2444578997776554 444443333
Q ss_pred HHHHHhhCCCCCc-eEEeeccCcccCC
Q 017631 196 VKLSREVDPTGER-TFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~-~i~VltK~D~~~~ 221 (368)
...+..+...+.| .|+|+||+|+.+.
T Consensus 117 ~~~~~~~~~~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 117 REHILLARQVGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHHHHcCCCEEEEEEEecCCcch
Confidence 3344445555677 6788999999854
No 227
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.06 E-value=8e-10 Score=95.01 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
+|+|+|+.|+|||||+++|....+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999986554
No 228
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.06 E-value=1e-09 Score=91.72 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
+|+++|+.|+|||||+.+++...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 589999999999999999887665
No 229
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.06 E-value=6.3e-10 Score=94.60 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.--+|+++|..+|||||+++.|....+.. ..||.-.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-------~~pT~g~------------------------------------- 48 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-------TIPTIGF------------------------------------- 48 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-------EEEESSE-------------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-------cCccccc-------------------------------------
Confidence 34679999999999999999998765411 1111000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+.-. +.. ....+.++|++|-... ..+...|+.++|++|+||++++.. .-.+.
T Consensus 49 -----------~~~~--i~~-~~~~~~~~d~gG~~~~-------------~~~w~~y~~~~~~iIfVvDssd~~-~l~e~ 100 (175)
T PF00025_consen 49 -----------NIEE--IKY-KGYSLTIWDLGGQESF-------------RPLWKSYFQNADGIIFVVDSSDPE-RLQEA 100 (175)
T ss_dssp -----------EEEE--EEE-TTEEEEEEEESSSGGG-------------GGGGGGGHTTESEEEEEEETTGGG-GHHHH
T ss_pred -----------ccce--eee-CcEEEEEEeccccccc-------------cccceeeccccceeEEEEecccce-eeccc
Confidence 0000 111 3357899999997542 345678999999888777665432 12222
Q ss_pred HHHH-Hhh---CCCCCceEEeeccCcccCC
Q 017631 196 VKLS-REV---DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~-~~~---~~~~~~~i~VltK~D~~~~ 221 (368)
...+ ..+ .....|+++++||.|..+.
T Consensus 101 ~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 101 KEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp HHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccchhhhcchhhcccceEEEEeccccccCc
Confidence 2222 222 2346899999999998754
No 230
>PLN03127 Elongation factor Tu; Provisional
Probab=99.06 E-value=9.3e-10 Score=106.65 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-..|+++|+.++|||||+++|++..- ..+.. ...... .+-.. . .+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~--~~~~~~-~~D~~------------------------~------~E 105 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA--KAVAFD-EIDKA------------------------P------EE 105 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc--cceeec-cccCC------------------------h------hH
Confidence 345699999999999999999986420 11110 000000 00000 0 01
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+.++++-+.....+.. ...+++||||||+.+ .+.++ ...+..+|+++++| ++......++
T Consensus 106 ----~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~------------f~~~~-~~g~~~aD~allVV-da~~g~~~qt- 165 (447)
T PLN03127 106 ----KARGITIATAHVEYET-AKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGGILVV-SAPDGPMPQT- 165 (447)
T ss_pred ----hhcCceeeeeEEEEcC-CCeEEEEEECCCccc------------hHHHH-HHHHhhCCEEEEEE-ECCCCCchhH-
Confidence 1244555554454433 445899999999843 11233 23445799777655 4555444443
Q ss_pred HHHHHhhCCCCCc-eEEeeccCcccCC
Q 017631 196 VKLSREVDPTGER-TFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~-~i~VltK~D~~~~ 221 (368)
...+..+...+.| +|+|+||+|+++.
T Consensus 166 ~e~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 166 KEHILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHHHcCCCeEEEEEEeeccCCH
Confidence 3455556666778 5788999999853
No 231
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.06 E-value=1.8e-09 Score=95.14 Aligned_cols=119 Identities=20% Similarity=0.286 Sum_probs=77.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-+|+|+|+.|||||||+++|.+..+...... ..+..+....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~-------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTI-------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEE--------------------------------------
Confidence 5799999999999999999999886222111 1112221111
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc---h
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT---S 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~---~ 193 (368)
........+.+|||+|... +..+...|...++.++++++........ .
T Consensus 48 ----------------~~~~~~~~~~~~Dt~gq~~-------------~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~ 98 (219)
T COG1100 48 ----------------EPYRRNIKLQLWDTAGQEE-------------YRSLRPEYYRGANGILIVYDSTLRESSDELTE 98 (219)
T ss_pred ----------------EeCCCEEEEEeecCCCHHH-------------HHHHHHHHhcCCCEEEEEEecccchhhhHHHH
Confidence 1111133588999999944 3677889999999888887665422212 2
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~ 223 (368)
.+...+....+...++++|.||+|+.....
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHhCCCCceEEEEecccccccchh
Confidence 333334444445689999999999986643
No 232
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.05 E-value=1.3e-09 Score=101.55 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=29.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccE
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPL 75 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~ 75 (368)
.+|++||.||+|||||+|+|+|.+........||+.|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~ 40 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPN 40 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccce
Confidence 58999999999999999999998842223345666664
No 233
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.05 E-value=1.8e-09 Score=103.99 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=41.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-cch--HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-ATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+++|||||..+ +...+..++..+|+++++|+. .... ..+ +.+.++.... .+++++|+||
T Consensus 80 ~~i~liDtPGh~~-------------f~~~~~~g~~~aD~aIlVVDa-~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGHET-------------LMATMLSGAALMDGALLVIAA-NEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCHHH-------------HHHHHHHHHHHCCEEEEEEEC-CCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 4789999999733 123345566789977766654 4322 222 2232332221 2578999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999864
No 234
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.04 E-value=1.3e-09 Score=96.52 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCce-EEeec
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERT-FGVLT 214 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~-i~Vlt 214 (368)
+....++++||||... -+...+..+|+++++ .++..+...++ ..++..+...+.|. ++|+|
T Consensus 80 ~~~~~i~~vDtPg~~~----------------~~l~~ak~aDvVllv-iDa~~~~~~~~-~~i~~~l~~~g~p~vi~Vvn 141 (225)
T cd01882 80 GKKRRLTFIECPNDIN----------------AMIDIAKVADLVLLL-IDASFGFEMET-FEFLNILQVHGFPRVMGVLT 141 (225)
T ss_pred cCCceEEEEeCCchHH----------------HHHHHHHhcCEEEEE-EecCcCCCHHH-HHHHHHHHHcCCCeEEEEEe
Confidence 3556889999998531 123345779966655 45555444433 33555555556674 55999
Q ss_pred cCcccCCc
Q 017631 215 KLDLMDKG 222 (368)
Q Consensus 215 K~D~~~~~ 222 (368)
|+|+..+.
T Consensus 142 K~D~~~~~ 149 (225)
T cd01882 142 HLDLFKKN 149 (225)
T ss_pred ccccCCcH
Confidence 99998543
No 235
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.04 E-value=2.7e-10 Score=90.20 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
+|+|+|+.|+|||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.04 E-value=2.3e-09 Score=105.89 Aligned_cols=138 Identities=15% Similarity=0.224 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..-.|+|+|..++|||||+++|+... +..++...+ . ..+. ......|+....
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~v-~--~~~~-----------~~~~~~D~~~~E-------- 60 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGTV-K--GRKS-----------GRHATSDWMEME-------- 60 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCcccccee-e--cccc-----------CccccCCCcHHH--------
Confidence 45789999999999999999997432 111111110 0 0000 000111222111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ .+++|-..-.+.+. ++...+++|||||..+. ...+..++..+|++|+|++.. .+... ..
T Consensus 61 ~----~rgiSi~~~~~~~~-~~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~-~gv~~-~t 120 (526)
T PRK00741 61 K----QRGISVTSSVMQFP-YRDCLINLLDTPGHEDF-------------SEDTYRTLTAVDSALMVIDAA-KGVEP-QT 120 (526)
T ss_pred H----hhCCceeeeeEEEE-ECCEEEEEEECCCchhh-------------HHHHHHHHHHCCEEEEEEecC-CCCCH-HH
Confidence 1 12222222222222 24467999999998542 334567788999888766543 34433 33
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+.+.....+.|+++++||+|+...
T Consensus 121 ~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 121 RKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHHhcCCCEEEEEECCccccc
Confidence 44566666678999999999998743
No 237
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.04 E-value=1.3e-09 Score=108.89 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=48.7
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....++||||||..+ +...+..+++.+|.++|+|+. ..+...+. ..++..+...+.|.++|+||+
T Consensus 62 ~~~kinlIDTPGh~D-------------F~~ev~~~l~~aD~alLVVDa-~~G~~~qT-~~~l~~a~~~~ip~IVviNKi 126 (594)
T TIGR01394 62 NGTKINIVDTPGHAD-------------FGGEVERVLGMVDGVLLLVDA-SEGPMPQT-RFVLKKALELGLKPIVVINKI 126 (594)
T ss_pred CCEEEEEEECCCHHH-------------HHHHHHHHHHhCCEEEEEEeC-CCCCcHHH-HHHHHHHHHCCCCEEEEEECC
Confidence 456899999999854 244568889999988877654 33333333 334555555678999999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 127 D~~~ 130 (594)
T TIGR01394 127 DRPS 130 (594)
T ss_pred CCCC
Confidence 9864
No 238
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.03 E-value=7.1e-10 Score=93.42 Aligned_cols=117 Identities=20% Similarity=0.350 Sum_probs=64.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-|.|+++|+.|||||+|+..|...... ..+|+.......
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~~------------------------------------- 41 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIAY------------------------------------- 41 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC-------------------------------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCceE-------------------------------------
Confidence 488999999999999999999987542 122222111110
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHH--hhcCCCeEEEEEeeCCCcccchH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRS--YIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+..+....+.+||+||..+.. ..+... |...+.+||++|+++...-...+
T Consensus 42 ---------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~ 94 (181)
T PF09439_consen 42 ---------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELRD 94 (181)
T ss_dssp ---------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHH
T ss_pred ---------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHHH
Confidence 0112344578999999997632 223333 68889988877766532111112
Q ss_pred HHHH----H--HhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKL----S--REVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l----~--~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..++ + ....+.+.|++++.||.|+...
T Consensus 95 ~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 95 VAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 2211 1 1223567999999999999753
No 239
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.03 E-value=1.5e-09 Score=110.39 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=42.4
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--HHHHHHHhhCCCCCceEEee
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--DAVKLSREVDPTGERTFGVL 213 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--~~~~l~~~~~~~~~~~i~Vl 213 (368)
.....++||||||..+ ....+ ...+..+|+++++| ++..+...+ +...++..+. .+++++|+
T Consensus 101 ~~~~~~~liDtPG~~~------------f~~~~-~~~~~~aD~~llVv-da~~g~~~~t~e~~~~~~~~~--~~~iivvv 164 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ------------YTRNM-VTGASTADLAIILV-DARKGVLTQTRRHSFIASLLG--IRHVVLAV 164 (632)
T ss_pred cCCceEEEEECCChHH------------HHHHH-HHHHHhCCEEEEEE-ECCCCccccCHHHHHHHHHhC--CCeEEEEE
Confidence 4456899999999632 11222 34578999776655 444443332 3333444332 25788999
Q ss_pred ccCcccC
Q 017631 214 TKLDLMD 220 (368)
Q Consensus 214 tK~D~~~ 220 (368)
||+|+.+
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999985
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.03 E-value=1.1e-09 Score=105.13 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=73.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-..|+++|+.++|||||+++|++..- ..+.+...... .+ |.. . .++
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~~~~~~~---~~----------------------d~~--~------~E~ 57 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLA-KKGGAEAKAYD---QI----------------------DKA--P------EEK 57 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhh-hccCCcccchh---hc----------------------cCC--h------HHH
Confidence 45699999999999999999998420 00000000000 00 000 0 011
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.++.+.+...+.+. .....++||||||+.+ +...+...+..+|+++++|+ +......+ ..
T Consensus 58 ----~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~-------------f~~~~~~~~~~aD~~llVVD-a~~g~~~q-t~ 117 (396)
T PRK00049 58 ----ARGITINTAHVEYE-TEKRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVS-AADGPMPQ-TR 117 (396)
T ss_pred ----hcCeEEeeeEEEEc-CCCeEEEEEECCCHHH-------------HHHHHHhhhccCCEEEEEEE-CCCCCchH-HH
Confidence 12334333333332 3456799999999832 12233455789997776554 44444333 33
Q ss_pred HHHHhhCCCCCceE-EeeccCcccCC
Q 017631 197 KLSREVDPTGERTF-GVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~~~~~~~~i-~VltK~D~~~~ 221 (368)
.++..+...+.|.+ +++||+|+.+.
T Consensus 118 ~~~~~~~~~g~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 118 EHILLARQVGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHHHHHcCCCEEEEEEeecCCcch
Confidence 34455555677876 68999999853
No 241
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.03 E-value=1e-09 Score=105.36 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=72.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-..|+++|+.++|||||+++|++.. ...+........ .+ |. .. .++
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~~~~~---~~----------------------d~--~~------~E~ 57 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAARAYD---QI----------------------DN--AP------EEK 57 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhH-HHhhcccccccc---cc----------------------cC--CH------HHH
Confidence 4569999999999999999998652 111110000000 00 00 00 011
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.++.+-+...+.+.. ....++||||||..+ +.......+..+|.++++++ +..+...+. .
T Consensus 58 ----~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~-------------f~~~~~~~~~~~D~~ilVvd-a~~g~~~qt-~ 117 (394)
T TIGR00485 58 ----ARGITINTAHVEYET-ENRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVS-ATDGPMPQT-R 117 (394)
T ss_pred ----hcCcceeeEEEEEcC-CCEEEEEEECCchHH-------------HHHHHHHHHhhCCEEEEEEE-CCCCCcHHH-H
Confidence 234444444444433 445799999999832 11222444568897776554 444333332 3
Q ss_pred HHHHhhCCCCCceE-EeeccCcccCC
Q 017631 197 KLSREVDPTGERTF-GVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~~~~~~~~i-~VltK~D~~~~ 221 (368)
+.+..+...+.|.+ +|+||+|+.++
T Consensus 118 e~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 118 EHILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHcCCCEEEEEEEecccCCH
Confidence 34444555566755 68999999864
No 242
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.01 E-value=1.7e-09 Score=93.51 Aligned_cols=66 Identities=24% Similarity=0.144 Sum_probs=41.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch--HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.|+||||... .+...|++++|++|+|.+..+.. +..- .|...++...+ ..|+++|.||
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 4788999999843 11234789999887776544331 1111 13333333333 5799999999
Q ss_pred CcccC
Q 017631 216 LDLMD 220 (368)
Q Consensus 216 ~D~~~ 220 (368)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99864
No 243
>PRK10218 GTP-binding protein; Provisional
Probab=99.01 E-value=2.8e-09 Score=106.53 Aligned_cols=130 Identities=14% Similarity=0.213 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC-CccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD-FLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~-~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.+..|+|+|+.++|||||+++|++.. .++.... .. .+ .+ |...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~-~~--~~--v~----------------------D~~~--------- 47 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE-TQ--ER--VM----------------------DSND--------- 47 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccc-cc--ee--ee----------------------cccc---------
Confidence 46789999999999999999999742 1111000 00 00 00 0000
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
. ...++++...-...+. +....+.+|||||..+. ...+..+++.+|++++|++. ..+...+.
T Consensus 48 -~--E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df-------------~~~v~~~l~~aDg~ILVVDa-~~G~~~qt 109 (607)
T PRK10218 48 -L--EKERGITILAKNTAIK-WNDYRINIVDTPGHADF-------------GGEVERVMSMVDSVLLVVDA-FDGPMPQT 109 (607)
T ss_pred -c--cccCceEEEEEEEEEe-cCCEEEEEEECCCcchh-------------HHHHHHHHHhCCEEEEEEec-ccCccHHH
Confidence 0 0112222222222232 34568999999998552 34567889999988876654 33333332
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...+..+...+.|.++|+||+|...
T Consensus 110 -~~~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 110 -RFVTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred -HHHHHHHHHcCCCEEEEEECcCCCC
Confidence 2344444556789999999999864
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.00 E-value=3.1e-09 Score=103.65 Aligned_cols=132 Identities=13% Similarity=0.110 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
+...|+++|+.++|||||+++|++..- ....+.+-.. ...|... .+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~~~---------------------~~~D~~~--------~E 125 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPKKY---------------------DEIDAAP--------EE 125 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhh-----hhcccccccc---------------------ccccCCh--------hH
Confidence 456699999999999999999997532 1111111000 0000000 01
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ .++++-+.....+. .....++||||||..+ . ...+...+..+|++++|| ++..+...+.
T Consensus 126 r----~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~------------f-~~~~~~g~~~aD~ailVV-da~~G~~~qt- 185 (478)
T PLN03126 126 R----ARGITINTATVEYE-TENRHYAHVDCPGHAD------------Y-VKNMITGAAQMDGAILVV-SGADGPMPQT- 185 (478)
T ss_pred H----hCCeeEEEEEEEEe-cCCcEEEEEECCCHHH------------H-HHHHHHHHhhCCEEEEEE-ECCCCCcHHH-
Confidence 1 12333333333333 3456899999999843 1 222355567899777665 4444443333
Q ss_pred HHHHHhhCCCCCc-eEEeeccCcccCC
Q 017631 196 VKLSREVDPTGER-TFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~-~i~VltK~D~~~~ 221 (368)
.+.+..+...+.+ +++++||+|+.++
T Consensus 186 ~e~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 186 KEHILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHHcCCCeEEEEEecccccCH
Confidence 3344445555676 7789999999864
No 245
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.7e-09 Score=85.43 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=80.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-.+.|+|+.++||||++-+.++..|-|.- .+.+.+....
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~af---vsTvGidFKv-------------------------------------- 60 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAF---VSTVGIDFKV-------------------------------------- 60 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccce---eeeeeeeEEE--------------------------------------
Confidence 46999999999999999999999873311 1111111110
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc--cchHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL--ATSDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~--~~~~~ 195 (368)
-.+ ..+.....+.++||.|.-. .+.++..|++.++.+||+.+.++... +.+++
T Consensus 61 -----------KTv-yr~~kRiklQiwDTagqEr-------------yrtiTTayyRgamgfiLmyDitNeeSf~svqdw 115 (193)
T KOG0093|consen 61 -----------KTV-YRSDKRIKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESFNSVQDW 115 (193)
T ss_pred -----------eEe-eecccEEEEEEEecccchh-------------hhHHHHHHhhccceEEEEEecCCHHHHHHHHHH
Confidence 000 1122234688999999832 47888999999999999987776522 12344
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.-.++.+.....++|+|.||||+-+.
T Consensus 116 ~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 116 ITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHheeeeccCceEEEEecccCCccc
Confidence 44555666678999999999999755
No 246
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.99 E-value=2e-08 Score=88.28 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=53.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH---HHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL---SREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l---~~~~~~~~~~~i~VltK 215 (368)
..+.++||||.... ..+...|+..+++++++++. +....-.....+ +.... ...|+++|.||
T Consensus 58 i~i~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~-~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEKF-------------GGLRDGYYIKGQCAIIMFDV-TSRITYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhccCCEEEEEEEC-cCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46889999996331 33446678889977766543 322211111112 12222 35788899999
Q ss_pred CcccCCcc--hHHHhhhCCCccCCCCeEEEEeCCccccccCccHH
Q 017631 216 LDLMDKGT--NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMI 258 (368)
Q Consensus 216 ~D~~~~~~--~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~ 258 (368)
+|+.+... ....+.. .....++.+...++.+++..+..+
T Consensus 123 ~Dl~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 123 VDVKDRQVKARQITFHR----KKNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred ccCccccCCHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99864321 1112211 123456666666666554433333
No 247
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.98 E-value=1.8e-08 Score=83.29 Aligned_cols=130 Identities=13% Similarity=0.187 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccc------cccEEEEEEecCCCcccceeeecCCCCcccChHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVT------RRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKE 109 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
.-+.|+|+|.+++||||++.+++.... +.-....+ .+++++.+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s~k~kr~tTva~------------------------------ 57 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVSGKGKRPTTVAM------------------------------ 57 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc-ceeeccccccccccccceeEee------------------------------
Confidence 457899999999999999999998762 11111111 12222222
Q ss_pred HHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc
Q 017631 110 IQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD 189 (368)
Q Consensus 110 i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~ 189 (368)
+.-.++ ..+...+.|+||||..+ +.-|..-+.+.+..+|++|+++. +
T Consensus 58 -----------------D~g~~~--~~~~~~v~LfgtPGq~R-------------F~fm~~~l~~ga~gaivlVDss~-~ 104 (187)
T COG2229 58 -----------------DFGSIE--LDEDTGVHLFGTPGQER-------------FKFMWEILSRGAVGAIVLVDSSR-P 104 (187)
T ss_pred -----------------cccceE--EcCcceEEEecCCCcHH-------------HHHHHHHHhCCcceEEEEEecCC-C
Confidence 111122 22335788999999855 35566778888998887776543 2
Q ss_pred ccchHHHHHHHhhCCCC-CceEEeeccCcccCC--cchHHHhhh
Q 017631 190 LATSDAVKLSREVDPTG-ERTFGVLTKLDLMDK--GTNALDILE 230 (368)
Q Consensus 190 ~~~~~~~~l~~~~~~~~-~~~i~VltK~D~~~~--~~~~~~~~~ 230 (368)
... ....++..+.... .|.++.+||.|+.+. -+++.+++.
T Consensus 105 ~~~-~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 105 ITF-HAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK 147 (187)
T ss_pred cch-HHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH
Confidence 222 4444555555444 899999999999854 334556554
No 248
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.97 E-value=4e-09 Score=104.19 Aligned_cols=137 Identities=16% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
....|+|+|..++|||||+++|+... +...+.+.+-. +.+ ......|+....
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~v~~--~g~------------~~~t~~D~~~~E-------- 61 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGAVKG--RGS------------QRHAKSDWMEME-------- 61 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccceecc--ccc------------cccccCCCCHHH--------
Confidence 46789999999999999999997432 11111110000 000 000111221111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ .+++|-..-.+.+. ++...+.|+||||..+. ...+.+++..+|++|+||+.. .....+ .
T Consensus 62 ~----~rgisi~~~~~~~~-~~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~-~gv~~~-t 121 (527)
T TIGR00503 62 K----QRGISITTSVMQFP-YRDCLVNLLDTPGHEDF-------------SEDTYRTLTAVDNCLMVIDAA-KGVETR-T 121 (527)
T ss_pred H----hcCCcEEEEEEEEe-eCCeEEEEEECCChhhH-------------HHHHHHHHHhCCEEEEEEECC-CCCCHH-H
Confidence 1 12333222222232 34568999999998431 334567788999887766554 333332 2
Q ss_pred HHHHHhhCCCCCceEEeeccCcccC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
..+.+.....+.|+++++||+|+..
T Consensus 122 ~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 122 RKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHHhcCCCEEEEEECccccC
Confidence 3355555556789999999999864
No 249
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.97 E-value=1.1e-08 Score=82.66 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=95.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-+|.++|--||||||++++|.|.+. +....|... .++
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf-~Ik--------------------------------------- 53 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF-QIK--------------------------------------- 53 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccce-eeE---------------------------------------
Confidence 6899999999999999999999863 111111110 011
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
.+ -.....++++|.-|... +++..++|...+|++|+||+++. ....++...
T Consensus 54 ------------tl---~~~~~~L~iwDvGGq~~-------------lr~~W~nYfestdglIwvvDssD-~~r~~e~~~ 104 (185)
T KOG0073|consen 54 ------------TL---EYKGYTLNIWDVGGQKT-------------LRSYWKNYFESTDGLIWVVDSSD-RMRMQECKQ 104 (185)
T ss_pred ------------EE---EecceEEEEEEcCCcch-------------hHHHHHHhhhccCeEEEEEECch-HHHHHHHHH
Confidence 01 11234799999999744 27778999999999998887743 333444443
Q ss_pred HHH----hhCCCCCceEEeeccCcccCCcc--hHHHhhhCCCc--cCCCCeEEEEeCCccccccCccHHHHHHHH
Q 017631 198 LSR----EVDPTGERTFGVLTKLDLMDKGT--NALDILEGRSY--PLQHPWVGIVNRSQADINKNVDMIAARRRE 264 (368)
Q Consensus 198 l~~----~~~~~~~~~i~VltK~D~~~~~~--~~~~~~~~~~~--~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E 264 (368)
.++ .-...|.+.+++.||.|....-. .+...+.-... ......+.+...+++++..+++.+.....+
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 332 22334789999999999983311 12222111122 222344566667777776777766665554
No 250
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.96 E-value=3.8e-08 Score=90.98 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.-+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998763
No 251
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.95 E-value=5.3e-09 Score=107.61 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=48.4
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeecc
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK 215 (368)
+....++||||||..+. ...+..++..+|+++++++ +..++..+. ..+++.+...+.|.++|+||
T Consensus 83 ~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVvd-a~~g~~~~t-~~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVC-AVEGVMPQT-ETVLRQALKENVKPVLFINK 147 (720)
T ss_pred CCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEEe-cCCCCCccH-HHHHHHHHHcCCCEEEEEEC
Confidence 45568999999999652 2346778899998876664 444443332 33555554556788999999
Q ss_pred CcccC
Q 017631 216 LDLMD 220 (368)
Q Consensus 216 ~D~~~ 220 (368)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99973
No 252
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.95 E-value=1.4e-08 Score=98.56 Aligned_cols=83 Identities=12% Similarity=0.229 Sum_probs=47.8
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc--ccchH--HHH
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD--LATSD--AVK 197 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~--~~~~~--~~~ 197 (368)
++++-+.....+. .....++||||||..+ +......++..+|++++|++..... ...+. ...
T Consensus 69 rg~Tid~~~~~~~-~~~~~i~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~ 134 (426)
T TIGR00483 69 RGVTIDVAHWKFE-TDKYEVTIVDCPGHRD-------------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF 134 (426)
T ss_pred cCceEEEEEEEEc-cCCeEEEEEECCCHHH-------------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH
Confidence 3444444444433 3446899999999632 1223445678999888776554331 22222 222
Q ss_pred HHHhhCCCCCceEEeeccCcccC
Q 017631 198 LSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 198 l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
+++... ..++++|+||+|+.+
T Consensus 135 ~~~~~~--~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 135 LARTLG--INQLIVAINKMDSVN 155 (426)
T ss_pred HHHHcC--CCeEEEEEEChhccC
Confidence 333332 257899999999974
No 253
>PLN00023 GTP-binding protein; Provisional
Probab=98.93 E-value=6.1e-09 Score=95.33 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=44.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCC-----------
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDP----------- 204 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~----------- 204 (368)
..+.|+||+|... +..+...|++++|++|+|.+..+.. .-. .+...+.....
T Consensus 83 v~LqIWDTAGqEr-------------frsL~~~yyr~AdgiILVyDITdr~-SFenL~kWl~eI~~~~~~s~p~~s~~~~ 148 (334)
T PLN00023 83 FFVELWDVSGHER-------------YKDCRSLFYSQINGVIFVHDLSQRR-TKTSLQKWASEVAATGTFSAPLGSGGPG 148 (334)
T ss_pred EEEEEEECCCChh-------------hhhhhHHhccCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhccccccccccccc
Confidence 3588999999743 2567788999999888776554422 111 22222222211
Q ss_pred -CCCceEEeeccCcccCC
Q 017631 205 -TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 205 -~~~~~i~VltK~D~~~~ 221 (368)
...++++|.||+|+...
T Consensus 149 ~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 149 GLPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCCcEEEEEECcccccc
Confidence 13689999999999753
No 254
>PRK13351 elongation factor G; Reviewed
Probab=98.92 E-value=6.4e-09 Score=106.87 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=49.5
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....++||||||..+ +...+..+++.+|+++++++. ......+ ...++..+...+.|.++|+||+
T Consensus 71 ~~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~ilVvd~-~~~~~~~-~~~~~~~~~~~~~p~iiviNK~ 135 (687)
T PRK13351 71 DNHRINLIDTPGHID-------------FTGEVERSLRVLDGAVVVFDA-VTGVQPQ-TETVWRQADRYGIPRLIFINKM 135 (687)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEEeC-CCCCCHH-HHHHHHHHHhcCCCEEEEEECC
Confidence 456899999999854 144567889999987766654 4333322 3345555666689999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 136 D~~~~ 140 (687)
T PRK13351 136 DRVGA 140 (687)
T ss_pred CCCCC
Confidence 98853
No 255
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.6e-08 Score=96.74 Aligned_cols=117 Identities=18% Similarity=0.269 Sum_probs=82.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|-|.++|+--.||||||-+|=+.++-+...|..|...-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIG---------------------------------------- 43 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG---------------------------------------- 43 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEee----------------------------------------
Confidence 5699999999999999999999998886666665553220
Q ss_pred hhhCCCCCCCCCceEEEEecC--CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSP--NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~--~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
..++..+ ..+.++++||||.-. +.+|=.+-..-+|.+||+| +++..+..|
T Consensus 44 --------------A~~v~~~~~~~~~itFiDTPGHeA-------------Ft~mRaRGa~vtDIaILVV-a~dDGv~pQ 95 (509)
T COG0532 44 --------------AYQVPLDVIKIPGITFIDTPGHEA-------------FTAMRARGASVTDIAILVV-AADDGVMPQ 95 (509)
T ss_pred --------------eEEEEeccCCCceEEEEcCCcHHH-------------HHHHHhcCCccccEEEEEE-EccCCcchh
Confidence 0112223 457899999999843 2444344456788666655 555555444
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.. .-+..++..+.|+++++||+|+.+.
T Consensus 96 Ti-EAI~hak~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 96 TI-EAINHAKAAGVPIVVAINKIDKPEA 122 (509)
T ss_pred HH-HHHHHHHHCCCCEEEEEecccCCCC
Confidence 43 4566677778999999999999854
No 256
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.3e-08 Score=83.97 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+-.++++|+.++|||.||-..+...|.|+-.... . +.+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti---G--vef------------------------------------ 43 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI---G--VEF------------------------------------ 43 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccccee---e--eee------------------------------------
Confidence 45679999999999999999999999855533110 0 000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--h
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT--S 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~--~ 193 (368)
-.-.+.|. .....|.++||.|. +.+.+++++|.+.+-..+||.+-...+.-+ .
T Consensus 44 -----------g~r~~~id-~k~IKlqiwDtaGq-------------e~frsv~~syYr~a~GalLVydit~r~sF~hL~ 98 (216)
T KOG0098|consen 44 -----------GARMVTID-GKQIKLQIWDTAGQ-------------ESFRSVTRSYYRGAAGALLVYDITRRESFNHLT 98 (216)
T ss_pred -----------ceeEEEEc-CceEEEEEEecCCc-------------HHHHHHHHHHhccCcceEEEEEccchhhHHHHH
Confidence 00011111 12236789999998 335889999999999888876554432222 2
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.|+.-+++......-++++.||+|+....
T Consensus 99 ~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 99 SWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 34434445544456678889999998653
No 257
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.3e-08 Score=95.16 Aligned_cols=143 Identities=16% Similarity=0.238 Sum_probs=91.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|.|.|+|+--.||||||.+|-+..+.....|..|...
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhI----------------------------------------- 190 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHI----------------------------------------- 190 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCcccee-----------------------------------------
Confidence 568899999999999999999998887544444444221
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
=-..+.-|....++|.||||.-. +..|=.+-..-+|.++||| ++..+ .....
T Consensus 191 -------------GAF~V~~p~G~~iTFLDTPGHaA-------------F~aMRaRGA~vtDIvVLVV-AadDG-VmpQT 242 (683)
T KOG1145|consen 191 -------------GAFTVTLPSGKSITFLDTPGHAA-------------FSAMRARGANVTDIVVLVV-AADDG-VMPQT 242 (683)
T ss_pred -------------ceEEEecCCCCEEEEecCCcHHH-------------HHHHHhccCccccEEEEEE-EccCC-ccHhH
Confidence 01113345567899999999843 3444445566788555554 55444 44445
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHH----hhhCCCc-cCCCCeEEEEeCCcc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALD----ILEGRSY-PLQHPWVGIVNRSQA 249 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~----~~~~~~~-~~~~g~~~v~~~s~~ 249 (368)
.+.++.+...+.|+++.+||+|.- +.+..+ ++..... ...-|-+.+.+.|+.
T Consensus 243 ~EaIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl 299 (683)
T KOG1145|consen 243 LEAIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISAL 299 (683)
T ss_pred HHHHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence 556777777889999999999965 333222 2222111 112355667777764
No 258
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.89 E-value=1.6e-08 Score=97.42 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
--.|+++|+.++|||||+.+|++.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCe
Confidence 346999999999999999999774
No 259
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.89 E-value=2.2e-08 Score=97.03 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.|+++|+-.+|||||+.||+|..
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCC
Confidence 349999999999999999999975
No 260
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.89 E-value=1.7e-08 Score=92.35 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=58.5
Q ss_pred CCeEEEeCCCCcccCCCCC-ChhHHHHHHHHHHHhhc--------------CCCeEEEEEeeCCCcccchHHHHHHHhhC
Q 017631 139 VNLTLIDLPGITKVAVEGQ-PESVVLEIETMVRSYIE--------------KPNCLILAITPANQDLATSDAVKLSREVD 203 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~d~iil~v~~~~~~~~~~~~~~l~~~~~ 203 (368)
.++++|||||+.+.-..+. -+.+...+...-..|+. +.|+++.++.|.+..+...+.. +++.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHh
Confidence 3799999999998655422 23345555555566643 4577777787877777666654 667776
Q ss_pred CCCCceEEeeccCcccCCcc
Q 017631 204 PTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 204 ~~~~~~i~VltK~D~~~~~~ 223 (368)
. ..++|-|+.|+|.+...+
T Consensus 161 ~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred c-ccCeeeeeeccccCCHHH
Confidence 4 588999999999996643
No 261
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.89 E-value=8e-09 Score=107.87 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=48.9
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...++||||||..+. ..-+...++.+|+.|+||+ +..+...+. ..+++.+...+.|+++++||+|
T Consensus 97 ~~~inliDtPGh~dF-------------~~e~~~al~~~D~ailVvd-a~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVD-CIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHH-------------HHHHHHHHhhcCEEEEEEE-CCCCCcccH-HHHHHHHHHCCCCEEEEEECCc
Confidence 346799999998552 2334666789998876655 455555444 3467777777899999999999
Q ss_pred cc
Q 017631 218 LM 219 (368)
Q Consensus 218 ~~ 219 (368)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 98
No 262
>PTZ00416 elongation factor 2; Provisional
Probab=98.89 E-value=9.9e-09 Score=107.01 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=48.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
..++|+||||..+. ..-+...+..+|++|+|| ++..+...+.. .+++.+...+.|.|+++||+|+
T Consensus 92 ~~i~liDtPG~~~f-------------~~~~~~al~~~D~ailVv-da~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVV-DCVEGVCVQTE-TVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHhH-------------HHHHHHHHhcCCeEEEEE-ECCCCcCccHH-HHHHHHHHcCCCEEEEEEChhh
Confidence 45899999999651 233567788999777655 45555555543 4677777778899999999999
Q ss_pred c
Q 017631 219 M 219 (368)
Q Consensus 219 ~ 219 (368)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 263
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.88 E-value=9.8e-09 Score=105.89 Aligned_cols=133 Identities=14% Similarity=0.233 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|+|+|+.++|||||+++|+... +..++.- . .+....|+....
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~------------g~~~~~D~~~~E-------- 64 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------A------------GEQLALDFDEEE-------- 64 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------c------------CcceecCccHHH--------
Confidence 56789999999999999999998643 2211100 0 001111221111
Q ss_pred hhhCCCCCCCCCceEEEEe-cCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIY-SPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~-~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+..| ..+....+.+... ......++||||||+.+. ...+...+..+|+++++|+ +..+...+.
T Consensus 65 ~~rg--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVvd-a~~g~~~~t 128 (731)
T PRK07560 65 QARG--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVD-AVEGVMPQT 128 (731)
T ss_pred HHhh--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEEE-CCCCCCccH
Confidence 1111 1111122222221 123457899999999662 3346777889998776655 444443333
Q ss_pred HHHHHHhhCCCCCceEEeeccCccc
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
..+++.+...+.|.|+++||+|..
T Consensus 129 -~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 129 -ETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred -HHHHHHHHHcCCCeEEEEECchhh
Confidence 335555444567889999999986
No 264
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=5.8e-09 Score=87.05 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=26.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSG 68 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~ 68 (368)
..|+++|.+|+|||||+|+|.|....+++..
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~ 133 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPI 133 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCC
Confidence 4688999999999999999999887555543
No 265
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=1.1e-08 Score=89.93 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=92.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|++++.|..|+|||||||.++..+.. ...+. ..+-..+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~-~~t~k--~K~g~Tq------------------------------------- 174 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNI-ADTSK--SKNGKTQ------------------------------------- 174 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhh-hhhcC--CCCccce-------------------------------------
Confidence 4689999999999999999999987641 11000 0110000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEE--EEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLI--LAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii--l~v~~~~~~~~~~ 193 (368)
.+.. ..-...+.+||+||+..... +.+..+.+..+++.|+.+-+.++ +...++...+..-
T Consensus 175 --------------~in~-f~v~~~~~~vDlPG~~~a~y---~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~ 236 (320)
T KOG2486|consen 175 --------------AINH-FHVGKSWYEVDLPGYGRAGY---GFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPT 236 (320)
T ss_pred --------------eeee-eeccceEEEEecCCcccccC---CccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCC
Confidence 0001 11223789999999655322 22244556788899976544332 2233444555444
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcc--------hHHHhhhC---CCccCCCCeEEEEeCCccccccC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGT--------NALDILEG---RSYPLQHPWVGIVNRSQADINKN 254 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~--------~~~~~~~~---~~~~~~~g~~~v~~~s~~~~~~~ 254 (368)
+.. .+..+...+.|.-+|+||||...... .....+.+ ....-.++|..+..++..|++.+
T Consensus 237 D~~-~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 237 DNP-EIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLL 307 (320)
T ss_pred ChH-HHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceee
Confidence 443 56677888999999999999974422 11110111 12223456776776666655443
No 266
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.88 E-value=4e-08 Score=77.79 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc---ccchHHHHHHHhhCCCCCceEEe
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD---LATSDAVKLSREVDPTGERTFGV 212 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~---~~~~~~~~l~~~~~~~~~~~i~V 212 (368)
.++..+.++|+||... ++.+...|.+..++|+.+|+++..+ .+.++...++..-.-.+.|+++.
T Consensus 62 kgnvtiklwD~gGq~r-------------frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 62 KGNVTIKLWDLGGQPR-------------FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred cCceEEEEEecCCCcc-------------HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 3556788999999854 3788899999999998888776643 22233333444444568999999
Q ss_pred eccCcccCC
Q 017631 213 LTKLDLMDK 221 (368)
Q Consensus 213 ltK~D~~~~ 221 (368)
.||.|+...
T Consensus 129 GnK~d~~~A 137 (186)
T KOG0075|consen 129 GNKIDLPGA 137 (186)
T ss_pred cccccCccc
Confidence 999999754
No 267
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.85 E-value=3.3e-09 Score=87.23 Aligned_cols=121 Identities=14% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+..|++.|+.|+|||||+|.+...+|.--.. .
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qyk--a-------------------------------------------- 40 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYK--A-------------------------------------------- 40 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhc--c--------------------------------------------
Confidence 357889999999999999999999887610000 0
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeC-CCcccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPA-NQDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~-~~~~~~~ 193 (368)
..+..|-.+.+.| . ....-|.||||.|.-+ +.++-..+++.+|+.+|+..-. ...+..-
T Consensus 41 ----TIgadFltKev~V--d-~~~vtlQiWDTAGQER-------------FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L 100 (210)
T KOG0394|consen 41 ----TIGADFLTKEVQV--D-DRSVTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNNPKSFENL 100 (210)
T ss_pred ----ccchhheeeEEEE--c-CeEEEEEEEecccHHH-------------hhhcccceecCCceEEEEeecCChhhhccH
Confidence 0011222222222 1 3344688999999733 4566677899999888763221 1122221
Q ss_pred -HHH-HHHHhhC---CCCCceEEeeccCcccCC
Q 017631 194 -DAV-KLSREVD---PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~-~l~~~~~---~~~~~~i~VltK~D~~~~ 221 (368)
.|. +++.+.+ |..-|+|++.||+|.-..
T Consensus 101 ~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 101 ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 122 2555554 456789999999999753
No 268
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.84 E-value=9.7e-09 Score=82.71 Aligned_cols=158 Identities=19% Similarity=0.211 Sum_probs=90.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-+++|+|+.-+||||||..++..+| |.= +.||+-. +......+
T Consensus 9 frlivigdstvgkssll~~ft~gkf-ael-----sdptvgv-----------------------------dffarlie-- 51 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKF-AEL-----SDPTVGV-----------------------------DFFARLIE-- 51 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcc-ccc-----CCCccch-----------------------------HHHHHHHh--
Confidence 4689999999999999999998886 211 1221110 01110111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--hHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT--SDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~--~~~ 195 (368)
+.......|.|+||+|. +.+++++++|.++.-.++++.+-+|...-. ..|
T Consensus 52 ---------------~~pg~riklqlwdtagq-------------erfrsitksyyrnsvgvllvyditnr~sfehv~~w 103 (213)
T KOG0091|consen 52 ---------------LRPGYRIKLQLWDTAGQ-------------ERFRSITKSYYRNSVGVLLVYDITNRESFEHVENW 103 (213)
T ss_pred ---------------cCCCcEEEEEEeeccch-------------HHHHHHHHHHhhcccceEEEEeccchhhHHHHHHH
Confidence 22223346889999997 446899999999998777666555432111 122
Q ss_pred HHHH-HhhC-CCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 196 VKLS-REVD-PTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 196 ~~l~-~~~~-~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
..-+ ..+. |.+.-..+|.+|+|+.....-..+..+......+..|+....+++.+.++....+.+
T Consensus 104 ~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 104 VKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred HHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHH
Confidence 2211 1222 555556688899999854321111111112344566777777777665554444433
No 269
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.83 E-value=3.7e-09 Score=92.85 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=36.0
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..+++||.|.|..+ ++ .....-+|++++++.|...|-..-....+++..| ++|+||+|
T Consensus 121 G~D~IiiETVGvGQ------sE----------~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD------i~vVNKaD 178 (266)
T PF03308_consen 121 GFDVIIIETVGVGQ------SE----------VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD------IFVVNKAD 178 (266)
T ss_dssp T-SEEEEEEESSST------HH----------HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S------EEEEE--S
T ss_pred CCCEEEEeCCCCCc------cH----------HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc------EEEEeCCC
Confidence 35899999999965 22 1224569988888887655432222222444444 89999999
Q ss_pred cc
Q 017631 218 LM 219 (368)
Q Consensus 218 ~~ 219 (368)
..
T Consensus 179 ~~ 180 (266)
T PF03308_consen 179 RP 180 (266)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 270
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.83 E-value=5.4e-09 Score=83.92 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
....|.++|+.|+|||||+-+++...|-|-.+ +++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~-------~tI-------------------------------------- 44 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHP-------TTI-------------------------------------- 44 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCC-------cee--------------------------------------
Confidence 35679999999999999999999877622211 111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
++..++-.+.+.+ ....+.||||+|. +.++.++-+|.+.+..+|+|.+-...+--..-
T Consensus 45 -------GvDFkvk~m~vdg-~~~KlaiWDTAGq-------------ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL- 102 (209)
T KOG0080|consen 45 -------GVDFKVKVMQVDG-KRLKLAIWDTAGQ-------------ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKL- 102 (209)
T ss_pred -------eeeEEEEEEEEcC-ceEEEEEEeccch-------------HhhhccCHhHhccCceeEEEEEccchhhHHhH-
Confidence 0111111222322 2247899999998 34578899999999999988655544321111
Q ss_pred HHHHHhhCCC----CCceEEeeccCcccC
Q 017631 196 VKLSREVDPT----GERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~----~~~~i~VltK~D~~~ 220 (368)
-.++++++.. ..--++|.||+|.-.
T Consensus 103 d~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 103 DIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred HHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 1134444432 233578999999753
No 271
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.80 E-value=8.1e-09 Score=96.24 Aligned_cols=178 Identities=18% Similarity=0.197 Sum_probs=103.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-..|++||++|+||||.+-.|...-++--+...+.-..+...-+++-++-+.|+..++.|-....+..++.+++....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~- 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD- 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc-
Confidence 3459999999999999999998754311111111111111111223344677888888888888888888877753322
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCC-CeEEEEEeeCCCcccchHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKP-NCLILAITPANQDLATSDA 195 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~iil~v~~~~~~~~~~~~ 195 (368)
.+++||||.|....... ..+++ ..|+... +.-+++|.+++. ...+.
T Consensus 282 ----------------------~d~ILVDTaGrs~~D~~-----~i~el----~~~~~~~~~i~~~Lvlsat~--K~~dl 328 (407)
T COG1419 282 ----------------------CDVILVDTAGRSQYDKE-----KIEEL----KELIDVSHSIEVYLVLSATT--KYEDL 328 (407)
T ss_pred ----------------------CCEEEEeCCCCCccCHH-----HHHHH----HHHHhccccceEEEEEecCc--chHHH
Confidence 28999999999763322 22223 3444322 223334445442 23455
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCcccc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADI 251 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~ 251 (368)
..+.......+- -=+++||.|....-.+..+++.. ..+...|+....+-+.++
T Consensus 329 kei~~~f~~~~i-~~~I~TKlDET~s~G~~~s~~~e--~~~PV~YvT~GQ~VPeDI 381 (407)
T COG1419 329 KEIIKQFSLFPI-DGLIFTKLDETTSLGNLFSLMYE--TRLPVSYVTNGQRVPEDI 381 (407)
T ss_pred HHHHHHhccCCc-ceeEEEcccccCchhHHHHHHHH--hCCCeEEEeCCCCCCchh
Confidence 556666654432 23789999999776667777652 333345555555555543
No 272
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=4.2e-08 Score=90.44 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=57.2
Q ss_pred CeEEEeCCCCcccCCCCC-ChhHHHHHHHHHHHhhc-------------CCCeEEEEEeeCCCcccchHHHHHHHhhCCC
Q 017631 140 NLTLIDLPGITKVAVEGQ-PESVVLEIETMVRSYIE-------------KPNCLILAITPANQDLATSDAVKLSREVDPT 205 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~ 205 (368)
+|++|||||+.+.-..+. -+.+.+.+.+.-..|+. +.|+++.++.|.+..+..-+.. +++.+..
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~- 157 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSK- 157 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhc-
Confidence 789999999998554422 23344555555566643 5677777888877766665554 6666654
Q ss_pred CCceEEeeccCcccCCcc
Q 017631 206 GERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 206 ~~~~i~VltK~D~~~~~~ 223 (368)
..++|-|+.|+|.+.+.+
T Consensus 158 ~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred cccccceeeccccCCHHH
Confidence 689999999999997654
No 273
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.7e-08 Score=101.78 Aligned_cols=135 Identities=16% Similarity=0.244 Sum_probs=86.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|.|+|+-.+|||||.++|+-.. |..++.. +++ .+..+.|+....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k~G-~v~-----------------~g~~~~D~~e~E-------- 56 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISKIG-EVH-----------------DGAATMDWMEQE-------- 56 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCCCc-ccc-----------------CCCccCCCcHHH--------
Confidence 56789999999999999999998654 3222211 000 011222332221
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
..++-.+....+.+... +...++||||||..+... -+.+.++-.|..|+|| ++..+...+.
T Consensus 57 --qeRGITI~saa~s~~~~--~~~~iNlIDTPGHVDFt~-------------EV~rslrvlDgavvVv-daveGV~~QT- 117 (697)
T COG0480 57 --QERGITITSAATTLFWK--GDYRINLIDTPGHVDFTI-------------EVERSLRVLDGAVVVV-DAVEGVEPQT- 117 (697)
T ss_pred --HhcCCEEeeeeeEEEEc--CceEEEEeCCCCccccHH-------------HHHHHHHhhcceEEEE-ECCCCeeecH-
Confidence 11222233333333332 246899999999988543 3677788889777555 4455554544
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..++++++..+.|.++++||+|....
T Consensus 118 Etv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 118 ETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHHHhhcCCCeEEEEECcccccc
Confidence 45888899999999999999999854
No 274
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.78 E-value=1.3e-08 Score=86.03 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=27.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCc
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG 68 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~ 68 (368)
..+++|+|.+|+|||||+|+|+|....+++..
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~ 148 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGAT 148 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCC
Confidence 46899999999999999999999887666543
No 275
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.76 E-value=1.1e-07 Score=92.33 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=44.8
Q ss_pred cCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc-----chHHHHHHHhhCCCCC-c
Q 017631 135 SPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA-----TSDAVKLSREVDPTGE-R 208 (368)
Q Consensus 135 ~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~-----~~~~~~l~~~~~~~~~-~ 208 (368)
......++||||||..+ +...+..++..+|+.||||+.....+. .....+.+..+...+. +
T Consensus 81 ~~~~~~i~liDtPGh~d-------------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~ 147 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRD-------------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147 (447)
T ss_pred cCCCEEEEEEECCCHHH-------------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCc
Confidence 34556899999999743 234456778899988877655432121 0122223333444455 5
Q ss_pred eEEeeccCccc
Q 017631 209 TFGVLTKLDLM 219 (368)
Q Consensus 209 ~i~VltK~D~~ 219 (368)
+|+++||+|+.
T Consensus 148 iIV~vNKmD~~ 158 (447)
T PLN00043 148 MICCCNKMDAT 158 (447)
T ss_pred EEEEEEcccCC
Confidence 78899999986
No 276
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=1.4e-08 Score=84.54 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=30.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-cccccc
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRP 74 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p 74 (368)
..++++++|.+|+|||||+|+|++...++++.+ .+|+.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 468899999999999999999999876555544 344444
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.75 E-value=6.1e-08 Score=94.19 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=42.8
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc------chHHHHHHHhhCCCCCc-
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA------TSDAVKLSREVDPTGER- 208 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~------~~~~~~l~~~~~~~~~~- 208 (368)
++...++||||||..+ +...+...+..+|.++|+|+. ..+.. .....+.+..+...+.|
T Consensus 82 ~~~~~i~lIDtPGh~~-------------f~~~~~~g~~~aD~ailVVda-~~G~~e~~~~~~~qT~eh~~~~~~~gi~~ 147 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRD-------------FIKNMITGTSQADVAILVVAS-TAGEFEAGISKDGQTREHALLAFTLGVKQ 147 (446)
T ss_pred cCCeEEEEEECCChHH-------------HHHHHHHhhhhcCEEEEEEEc-CCCceecccCCCccHHHHHHHHHHcCCCe
Confidence 4556899999999643 122335557899988776654 33321 11222334444555655
Q ss_pred eEEeeccCccc
Q 017631 209 TFGVLTKLDLM 219 (368)
Q Consensus 209 ~i~VltK~D~~ 219 (368)
+|+++||+|..
T Consensus 148 iiv~vNKmD~~ 158 (446)
T PTZ00141 148 MIVCINKMDDK 158 (446)
T ss_pred EEEEEEccccc
Confidence 67999999953
No 278
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.74 E-value=3.8e-07 Score=81.43 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g 59 (368)
.-+.|.|.|.||+|||||+.+|.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 346899999999999999999863
No 279
>PRK12740 elongation factor G; Reviewed
Probab=98.74 E-value=3.4e-08 Score=101.37 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=48.7
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....+++|||||..+ +...+..++..+|++++++++ ..+... ....++..+...+.|.++|+||+
T Consensus 58 ~~~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllvvd~-~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 58 KGHKINLIDTPGHVD-------------FTGEVERALRVLDGAVVVVCA-VGGVEP-QTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEEEeC-CCCcCH-HHHHHHHHHHHcCCCEEEEEECC
Confidence 456899999999854 134456778899977766654 444333 33345555666688999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|....
T Consensus 123 D~~~~ 127 (668)
T PRK12740 123 DRAGA 127 (668)
T ss_pred CCCCC
Confidence 98753
No 280
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=4.8e-08 Score=89.99 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=65.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.++++||.||+|||||+|||+.....+...-.||--|-+-.. .+ ++.--.....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv-----------~v--------------~d~rl~~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVV-----------YV--------------PDCRLDELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEE-----------ec--------------CchHHHHHHHh
Confidence 578999999999999999999988645555567766622111 00 00000001111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeC
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPA 186 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~ 186 (368)
... +... -..++.+||.+|+...++++..- -+....-++++|+|++||...
T Consensus 58 ~~c----~~k~--------~~~~ve~vDIAGLV~GAs~GeGL------GNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 58 VKC----PPKI--------RPAPVEFVDIAGLVKGASKGEGL------GNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCC----CCcE--------EeeeeEEEEecccCCCcccCCCc------chHHHHhhhhcCeEEEEEEec
Confidence 110 0010 01268899999999988775322 344566688999999888654
No 281
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.74 E-value=4.2e-08 Score=91.69 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=81.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccC--cccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGS--GIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~--~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|+++|++|+||||++..|.+. +...+. +.++..+ .-..+-++...|+...+.+-....+-..+.+.+.....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~~GkkVglI~aDt---~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGKKKTVGFITTDH---SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHHcCCcEEEEecCC---cchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 57999999999999999999863 111110 1111000 00000001122222333232222344444444432111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
....+++||||||..... ....+.+..+... ..++.++||+ ++. ....+.
T Consensus 318 --------------------~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~--~~PdevlLVL-sAT--tk~~d~ 367 (436)
T PRK11889 318 --------------------EARVDYILIDTAGKNYRA-----SETVEEMIETMGQ--VEPDYICLTL-SAS--MKSKDM 367 (436)
T ss_pred --------------------ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhh--cCCCeEEEEE-CCc--cChHHH
Confidence 012489999999996522 2233333333322 2456566554 433 123444
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHHhhh
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALDILE 230 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~ 230 (368)
...++.... -...=+|+||.|.......+.++..
T Consensus 368 ~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 368 IEIITNFKD-IHIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred HHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHH
Confidence 556666554 3445689999999987776777655
No 282
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.72 E-value=7.1e-08 Score=104.22 Aligned_cols=164 Identities=19% Similarity=0.136 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCC
Q 017631 5 ESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEP 84 (368)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~ 84 (368)
+++..+-.++++++..|+...... .+-.+++|+.+|+|++||||||+|+.- |.++ |.......... .-...+.
T Consensus 81 ~~~~~l~~~~~~a~~~Lk~~~~~~--~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~---~~~~~t~ 153 (1169)
T TIGR03348 81 AEIRELRARFNEALALLKRSRLGG--RRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAAL---RGVGGTR 153 (1169)
T ss_pred HHHHHHHHHHHHHHHHHhhccccC--chhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccc---cCCCCCc
Confidence 566678899999999998765222 234579999999999999999999995 8874 66432110000 0000000
Q ss_pred CcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCC--CCChhHH
Q 017631 85 GLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVE--GQPESVV 162 (368)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~--~~~~~~~ 162 (368)
. +..+-..+.++|||+|.+-.... ......+
T Consensus 154 ~-----------------------------------------------c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 154 N-----------------------------------------------CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred c-----------------------------------------------cceEecCCEEEEcCCCccccCCCcccccHHHH
Confidence 0 11223346789999997654321 1122345
Q ss_pred HHHHHHHHHh--hcCCCeEEEEEeeCCCcc-cchHHHHHH----------HhhCCCCCceEEeeccCcccCCc
Q 017631 163 LEIETMVRSY--IEKPNCLILAITPANQDL-ATSDAVKLS----------REVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 163 ~~~~~~~~~~--~~~~d~iil~v~~~~~~~-~~~~~~~l~----------~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
..+-.+.+++ -+..|.||++|.-..--. ........+ ...-...-|+.+|+||+|++.--
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCH
Confidence 5555555666 346788887765422110 011111111 11123468999999999999543
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=2.9e-08 Score=93.24 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.++++|++|+||||++..|.+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999875
No 284
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.68 E-value=8.1e-08 Score=91.64 Aligned_cols=156 Identities=14% Similarity=0.162 Sum_probs=79.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCc---cccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFL---PRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~---p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..|++||.+|+||||++..|.+..++ +...+..+... .....-++...++..++.+.....+..++...+.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~---~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~--- 265 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS---YRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH--- 265 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC---cchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH---
Confidence 57999999999999999999885321 11101111000 0000001112233333333333333333332221
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.-...++++|||+|...... .+.+.+..+. . ...+.-.+||+..+.. .++
T Consensus 266 --------------------~l~~~d~VLIDTaGrsqrd~-----~~~~~l~~l~-~-~~~~~~~~LVl~at~~---~~~ 315 (420)
T PRK14721 266 --------------------ELRGKHMVLIDTVGMSQRDQ-----MLAEQIAMLS-Q-CGTQVKHLLLLNATSS---GDT 315 (420)
T ss_pred --------------------HhcCCCEEEecCCCCCcchH-----HHHHHHHHHh-c-cCCCceEEEEEcCCCC---HHH
Confidence 11234789999999976321 1333333331 1 1223335555544322 334
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhh
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILE 230 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~ 230 (368)
....+...... ...=+|+||.|.......+.+++.
T Consensus 316 ~~~~~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 316 LDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred HHHHHHHhcCC-CCCEEEEEeeeCCCCccHHHHHHH
Confidence 44455555432 345589999999987766777654
No 285
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=5.2e-08 Score=83.98 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=23.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
..++++|.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 6799999999999999999998764
No 286
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.67 E-value=1.5e-07 Score=87.85 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCC-------CcccceeeecCCCCcccChHHHHHH
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEP-------GLQEYAEFLHLPKKKFTDFSIVRKE 109 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (368)
-..|+++|++|+||||++..|... +...+. . +.+....+ +...|+...+.+-....+...+.++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~-----~---V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR-----T---VGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC-----e---EEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 345899999999999999999853 211110 0 11111111 1222333333332223444555544
Q ss_pred HHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc
Q 017631 110 IQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD 189 (368)
Q Consensus 110 i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~ 189 (368)
+..... ....+++||||||..... ....+.+..+.. ...++.++|| .+++
T Consensus 277 l~~l~~--------------------~~~~D~VLIDTAGr~~~d-----~~~l~EL~~l~~--~~~p~~~~LV-Lsag-- 326 (407)
T PRK12726 277 VQYMTY--------------------VNCVDHILIDTVGRNYLA-----EESVSEISAYTD--VVHPDLTCFT-FSSG-- 326 (407)
T ss_pred HHHHHh--------------------cCCCCEEEEECCCCCccC-----HHHHHHHHHHhh--ccCCceEEEE-CCCc--
Confidence 432110 022489999999996522 112222222211 1255644544 3433
Q ss_pred ccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhh
Q 017631 190 LATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILE 230 (368)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~ 230 (368)
....+...+++.... -...-+|+||.|.......+.++..
T Consensus 327 ~~~~d~~~i~~~f~~-l~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 MKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred ccHHHHHHHHHhcCc-CCCCEEEEEcccCCCCccHHHHHHH
Confidence 223344445544443 2345688999999977666666654
No 287
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.67 E-value=6.2e-08 Score=98.10 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=83.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
.|++||.+|+||||++..|.+.-..-.+...+.-..+...-....++...|+...+.+.....+...+.+.+.. .
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~----~- 261 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA----L- 261 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH----h-
Confidence 58999999999999999999863211111000000000000001112334444455444444455555544432 1
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL 198 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l 198 (368)
...+++||||||...... .+.+.+..+.. ...++-.+||+..+.. .++...+
T Consensus 262 ------------------~~~D~VLIDTAGRs~~d~-----~l~eel~~l~~--~~~p~e~~LVLsAt~~---~~~l~~i 313 (767)
T PRK14723 262 ------------------GDKHLVLIDTVGMSQRDR-----NVSEQIAMLCG--VGRPVRRLLLLNAASH---GDTLNEV 313 (767)
T ss_pred ------------------cCCCEEEEeCCCCCccCH-----HHHHHHHHHhc--cCCCCeEEEEECCCCc---HHHHHHH
Confidence 123799999999866322 13343333322 2344445555544322 2333334
Q ss_pred HHhhCCCC--CceEEeeccCcccCCcchHHHhhh
Q 017631 199 SREVDPTG--ERTFGVLTKLDLMDKGTNALDILE 230 (368)
Q Consensus 199 ~~~~~~~~--~~~i~VltK~D~~~~~~~~~~~~~ 230 (368)
++.+.... ...=+|+||.|.......+.++..
T Consensus 314 ~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 314 VHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 44443221 345688999999988777777665
No 288
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.67 E-value=5.5e-08 Score=79.55 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=23.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFL 63 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~ 63 (368)
..++++|.+|+|||||+|+|++....
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce
Confidence 38999999999999999999998753
No 289
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.4e-07 Score=79.73 Aligned_cols=113 Identities=21% Similarity=0.351 Sum_probs=70.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
|.|.++|.++||||+|+-.|....+ .+|+..+....
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~----------~~TvtSiepn~---------------------------------- 74 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH----------RGTVTSIEPNE---------------------------------- 74 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc----------cCeeeeeccce----------------------------------
Confidence 7999999999999999999887643 23333321100
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc---CCCeEEEEEeeCCCcccchH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE---KPNCLILAITPANQDLATSD 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~iil~v~~~~~~~~~~~ 194 (368)
+ .+..+....+|||.||..+. +.....|+. .+-+||+||+++...-...+
T Consensus 75 -a-------------~~r~gs~~~~LVD~PGH~rl-------------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrd 127 (238)
T KOG0090|consen 75 -A-------------TYRLGSENVTLVDLPGHSRL-------------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRD 127 (238)
T ss_pred -e-------------eEeecCcceEEEeCCCcHHH-------------HHHHHHHccccccceeEEEEEeccccchhhHH
Confidence 0 11112224799999999662 333455655 67778878877654433333
Q ss_pred HHHHH----Hhh--CCCCCceEEeeccCcccCC
Q 017631 195 AVKLS----REV--DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~----~~~--~~~~~~~i~VltK~D~~~~ 221 (368)
...++ ... ...+.+++++.||.|+...
T Consensus 128 vaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 128 VAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 33322 111 2457889999999999854
No 290
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.64 E-value=4.6e-08 Score=84.39 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=42.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.+++||||||..... .+..+++.++... + .++-++||+.+ +.. ............. ....=+|+||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~-~-~~~~~~LVlsa-~~~--~~~~~~~~~~~~~-~~~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD-----EELLEELKKLLEA-L-NPDEVHLVLSA-TMG--QEDLEQALAFYEA-FGIDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTH-----HHHHHHHHHHHHH-H-SSSEEEEEEEG-GGG--GHHHHHHHHHHHH-SSTCEEEEESTTS
T ss_pred CCEEEEecCCcchhh-----HHHHHHHHHHhhh-c-CCccceEEEec-ccC--hHHHHHHHHHhhc-ccCceEEEEeecC
Confidence 479999999986532 2233444443222 2 45545555544 332 2222222222222 1234578999999
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+.+.+.
T Consensus 153 t~~~G~~l~~~~ 164 (196)
T PF00448_consen 153 TARLGALLSLAY 164 (196)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCCcccceeHHH
Confidence 977666666654
No 291
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.63 E-value=4e-07 Score=80.42 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC-CCccccCc--cccc
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR-DFLPRGSG--IVTR 72 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~-~~~p~~~~--~~t~ 72 (368)
.+-.|+|+|.+++|||+|+|.|+|. ..|+++.+ .||+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~ 45 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTK 45 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCcc
Confidence 5567999999999999999999998 23566654 4554
No 292
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.63 E-value=5e-07 Score=86.32 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=46.7
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..+++||||||..... +.+.+++..+. ...+++.++||+++ ..+ ++....++.....-...-+|+||.|
T Consensus 182 ~~DvViIDTaGr~~~d-----~~lm~El~~i~--~~~~p~e~lLVlda-~~G---q~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE-----DSLFEEMLQVA--EAIQPDNIIFVMDG-SIG---QAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcch-----HHHHHHHHHHh--hhcCCcEEEEEecc-ccC---hhHHHHHHHHHhccCCcEEEEECcc
Confidence 3589999999975421 22444444432 23366766666543 322 2333344444444457789999999
Q ss_pred ccCCcchHHHh
Q 017631 218 LMDKGTNALDI 228 (368)
Q Consensus 218 ~~~~~~~~~~~ 228 (368)
.......+..+
T Consensus 251 ~~argG~aLs~ 261 (429)
T TIGR01425 251 GHAKGGGALSA 261 (429)
T ss_pred CCCCccHHhhh
Confidence 98766544444
No 293
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.61 E-value=5.7e-08 Score=87.62 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=65.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
+.+.+||-||+||||++|+|+....-|...-.||--|-+-+. ..+..++ +..
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V--------------~v~d~Rf--------------d~l 72 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARV--------------EVPDSRF--------------DLL 72 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceecccccee--------------ecCchHH--------------HHH
Confidence 589999999999999999999988644444556666632221 0011010 111
Q ss_pred hCCCCCCCCCceEEEEecCCC---CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEee
Q 017631 118 TGKSKQISPVPIHLSIYSPNV---VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITP 185 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~---~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~ 185 (368)
.. +++|.. ..|++.|+.|+...++.++.- -+...+.++++|+|+.+|..
T Consensus 73 ~~-------------~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL------GN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 73 CP-------------IYGPKSKVPAFLTVYDIAGLVKGASAGEGL------GNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred HH-------------hcCCcceeeeeEEEEeecccccCcccCcCc------hHHHHHhhhhccceeEEEEe
Confidence 11 222221 278999999999988765322 44456678899999988754
No 294
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.60 E-value=2.5e-07 Score=77.22 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
|.++++|..|+|||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 77899999999999999999875
No 295
>PRK13768 GTPase; Provisional
Probab=98.60 E-value=3.7e-07 Score=82.22 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.++|.|..|+||||+...+..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 478999999999999888764
No 296
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.4e-07 Score=77.27 Aligned_cols=119 Identities=15% Similarity=0.238 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-+-.|+++|++++|||=|+.+++.-.| .+-++.++=+.+...+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~t~t-------------------------------- 55 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFATRT-------------------------------- 55 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEEeec--------------------------------
Confidence 467799999999999999999998887 3333322222221100
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cc-cch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DL-ATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~-~~~ 193 (368)
+.+ ........||||.|.- .++.++..|.+.+...+|+.+-+.. .+ ...
T Consensus 56 ---------------~~v-d~k~vkaqIWDTAGQE-------------RyrAitSaYYrgAvGAllVYDITr~~Tfenv~ 106 (222)
T KOG0087|consen 56 ---------------VNV-DGKTVKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITRRQTFENVE 106 (222)
T ss_pred ---------------eee-cCcEEEEeeecccchh-------------hhccccchhhcccceeEEEEechhHHHHHHHH
Confidence 001 1122356799999983 3467788999999987766544332 11 123
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
.|++-++.......++++|.||+|+..
T Consensus 107 rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 107 RWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 344433433444678899999999975
No 297
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.58 E-value=3.1e-07 Score=82.22 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=24.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPR 65 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~ 65 (368)
..++++|.+|+|||||||+|++...+.+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t 148 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQV 148 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccc
Confidence 4799999999999999999999765433
No 298
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=9.2e-07 Score=82.25 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=49.9
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc------ccch--
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD------LATS-- 193 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~------~~~~-- 193 (368)
++++-+.-...+..+ .+.++|+|+||..+ .+.+| ..-...+|+.||||...... ...+
T Consensus 69 rGvTi~~~~~~fet~-k~~~tIiDaPGHrd------------Fvknm-ItGasqAD~aVLVV~a~~~efE~g~~~~gQtr 134 (428)
T COG5256 69 RGVTIDVAHSKFETD-KYNFTIIDAPGHRD------------FVKNM-ITGASQADVAVLVVDARDGEFEAGFGVGGQTR 134 (428)
T ss_pred cceEEEEEEEEeecC-CceEEEeeCCchHH------------HHHHh-hcchhhccEEEEEEECCCCccccccccCCchh
Confidence 445444444444443 45899999999633 12333 33456899888776543321 2222
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
+..-+++.+. -...|+++||+|..+
T Consensus 135 EH~~La~tlG--i~~lIVavNKMD~v~ 159 (428)
T COG5256 135 EHAFLARTLG--IKQLIVAVNKMDLVS 159 (428)
T ss_pred HHHHHHHhcC--CceEEEEEEcccccc
Confidence 3333555443 478899999999996
No 299
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.58 E-value=1.1e-07 Score=75.42 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCC--CCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPT--GERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~--~~~~i~VltK~ 216 (368)
..|.|+||+|- +.++.++..|.+.++.+|++.+-.+. .+-.-..++++++... ..+-++|.||.
T Consensus 57 VkLqIwDtAGq-------------ErFrtitstyyrgthgv~vVYDVTn~-ESF~Nv~rWLeei~~ncdsv~~vLVGNK~ 122 (198)
T KOG0079|consen 57 VKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYDVTNG-ESFNNVKRWLEEIRNNCDSVPKVLVGNKN 122 (198)
T ss_pred EEEEEeecccH-------------HHHHHHHHHHccCCceEEEEEECcch-hhhHhHHHHHHHHHhcCccccceecccCC
Confidence 46889999997 45688899999999988766543332 1111222334444322 46788999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|..+.
T Consensus 123 d~~~R 127 (198)
T KOG0079|consen 123 DDPER 127 (198)
T ss_pred CCccc
Confidence 98754
No 300
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.57 E-value=3.3e-07 Score=77.52 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccc
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPR 65 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~ 65 (368)
..+.++++|.+|+|||||+|+|.+..+..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~ 143 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV 143 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee
Confidence 346899999999999999999999876433
No 301
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.57 E-value=1.4e-07 Score=77.87 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=22.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPR 65 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~ 65 (368)
..++++|..|+|||||+|+|++...+++
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 7899999999999999999999864443
No 302
>PRK12289 GTPase RsgA; Reviewed
Probab=98.56 E-value=1.6e-07 Score=88.15 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCcccc
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRG 66 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~ 66 (368)
.++|+|.+|+|||||||+|++...+.++
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 4899999999999999999987654443
No 303
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=3.6e-07 Score=87.27 Aligned_cols=131 Identities=20% Similarity=0.281 Sum_probs=80.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+..+.||.+--.|||||..+|+... +. ..+. . .. +++-+.++ .+
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~t------g~--i~~~------~-------------~q------~q~LDkl~--vE- 103 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELT------GT--IDNN------I-------------GQ------EQVLDKLQ--VE- 103 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHh------CC--CCCC------C-------------ch------hhhhhhhh--hh-
Confidence 4469999999999999999998754 21 1110 0 00 01111111 11
Q ss_pred hhCCCCCCCCCceEEEEecC--CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 117 VTGKSKQISPVPIHLSIYSP--NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~--~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
++++++-+.-...+++. ...-+.||||||..+.... +.+.+.-+|.++|+| +++++...|.
T Consensus 104 ---RERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLvV-DA~qGvqAQT 166 (650)
T KOG0462|consen 104 ---RERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLVV-DASQGVQAQT 166 (650)
T ss_pred ---hhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEEE-EcCcCchHHH
Confidence 22333333323333332 2356899999999886654 455667788777665 5566777777
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
...+.... ..+-.+|.|+||+|+-..
T Consensus 167 ~anf~lAf-e~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 167 VANFYLAF-EAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHHHH-HcCCeEEEeeeccCCCCC
Confidence 66555444 457899999999999743
No 304
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.56 E-value=5.1e-07 Score=77.88 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=70.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|..|+|||+|.-.+++..|.+. -.++.. .. |
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptie----d~----------y--------------------------- 40 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIE----DS----------Y--------------------------- 40 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-cCCCcc----cc----------c---------------------------
Confidence 35799999999999999999999886322 111000 00 0
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
...+.+. .....+.|+||+|.-+ +..+-..|+...|.+++|..-.+. .+-+...
T Consensus 41 -----------~k~~~v~-~~~~~l~ilDt~g~~~-------------~~~~~~~~~~~~~gF~lVysitd~-~SF~~~~ 94 (196)
T KOG0395|consen 41 -----------RKELTVD-GEVCMLEILDTAGQEE-------------FSAMRDLYIRNGDGFLLVYSITDR-SSFEEAK 94 (196)
T ss_pred -----------eEEEEEC-CEEEEEEEEcCCCccc-------------ChHHHHHhhccCcEEEEEEECCCH-HHHHHHH
Confidence 0011122 2334788999999322 145567889999988766543322 2122222
Q ss_pred HHHHhh----CCCCCceEEeeccCcccCC
Q 017631 197 KLSREV----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~----~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+ .....|+++|.||+|+...
T Consensus 95 ~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 95 QLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred HHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 233333 3345699999999999853
No 305
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=5e-07 Score=77.77 Aligned_cols=81 Identities=21% Similarity=0.324 Sum_probs=48.2
Q ss_pred CeEEEeCCCCcccCCCCC-ChhHHHHHHHHHHHhhc--------------CCCeEEEEEeeCCCcccchHHHHHHHhhCC
Q 017631 140 NLTLIDLPGITKVAVEGQ-PESVVLEIETMVRSYIE--------------KPNCLILAITPANQDLATSDAVKLSREVDP 204 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~d~iil~v~~~~~~~~~~~~~~l~~~~~~ 204 (368)
.+++|||||+.+.-..+. =+-+...+.+.-..|++ +.+|++.++-+....+..-+.. +++.+..
T Consensus 105 kltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDie-flkrLt~ 183 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIE-FLKRLTE 183 (336)
T ss_pred EEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHH-HHHHHhh
Confidence 689999999987544321 01122223333333332 4567777776766555444443 5555543
Q ss_pred CCCceEEeeccCcccCCc
Q 017631 205 TGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 205 ~~~~~i~VltK~D~~~~~ 222 (368)
-.+++-|+-|.|.+.-+
T Consensus 184 -vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 184 -VVNVVPVIAKADTLTLE 200 (336)
T ss_pred -hheeeeeEeecccccHH
Confidence 36789999999998543
No 306
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.54 E-value=3.7e-07 Score=85.38 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=61.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccc-cCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPR-GSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~-~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+++||-||+|||||+|+|++....|. ....||..|..-... .+ +.. ++.+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~-v~-------------d~r---~d~L~~-------- 57 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVN-PS-------------DPR---LDLLAI-------- 57 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEE-ec-------------hhH---HHHHHH--------
Confidence 4689999999999999999999985233 334566655322210 00 000 011110
Q ss_pred hhCCCCCCCCCceEEEEecCC---CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEee
Q 017631 117 VTGKSKQISPVPIHLSIYSPN---VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITP 185 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~---~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~ 185 (368)
++.|. ...+.++|.||+...+..+.. ..+.....++++|++++||..
T Consensus 58 ----------------~~~~~~~~~a~i~~~DiaGlv~gAs~g~G------lgn~fL~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 58 ----------------YIKPEKVPPTTTEFVDIAGLVGGASKGEG------LGNQFLANIREVDIIQHVVRC 107 (368)
T ss_pred ----------------HhCCcCcCCceEEEEeccccccchhcccC------cchHHHHHHHhCCEEEEEEeC
Confidence 01111 125789999999987655322 134456778999988877654
No 307
>PRK12288 GTPase RsgA; Reviewed
Probab=98.54 E-value=3e-07 Score=86.24 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCcccc
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRG 66 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~ 66 (368)
.++++|.+|+|||||||+|+|...+.++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~ 234 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVG 234 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeec
Confidence 4899999999999999999998754443
No 308
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.53 E-value=1.3e-06 Score=69.76 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=76.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.-.|+|+|.-|+|||++|+.|+-....|-..-..|-- +.|..
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-------------DiY~~------------------------- 50 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-------------DIYVA------------------------- 50 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-------------hheeE-------------------------
Confidence 4679999999999999999998766533322221211 11111
Q ss_pred hhCCCCCCCCCceEEEEecCC--CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 117 VTGKSKQISPVPIHLSIYSPN--VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~--~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+..+. ...+.|.||.|+.... .++-+.|+.-+|+++|+..+.+. -+-+.
T Consensus 51 ---------------svet~rgarE~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~-eSf~r 102 (198)
T KOG3883|consen 51 ---------------SVETDRGAREQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDP-ESFQR 102 (198)
T ss_pred ---------------eeecCCChhheEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCH-HHHHH
Confidence 122222 1368899999996631 56778999999999988766442 11122
Q ss_pred HHHHHHhhCC----CCCceEEeeccCcccCCcc
Q 017631 195 AVKLSREVDP----TGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 195 ~~~l~~~~~~----~~~~~i~VltK~D~~~~~~ 223 (368)
..-+-++++. ...|+++..||+|+..+.+
T Consensus 103 v~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 103 VELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred HHHHHHHHhhccccccccEEEEechhhcccchh
Confidence 2223345543 3477888899999986644
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.52 E-value=2.6e-07 Score=87.55 Aligned_cols=155 Identities=18% Similarity=0.300 Sum_probs=78.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCC-------CcccceeeecCCCCcccChHHHHHHH
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEP-------GLQEYAEFLHLPKKKFTDFSIVRKEI 110 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i 110 (368)
..|++||++|+||||++..|+..-.+-. ......+.+..... +...|+..++.|-....++..+...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 4689999999999999999875321000 00011111111211 12333444444433334444444433
Q ss_pred HHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc
Q 017631 111 QEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL 190 (368)
Q Consensus 111 ~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~ 190 (368)
.. . ...+++||||||...... . ....+..+....-...+ .+||+ +++..
T Consensus 250 ~~----~-------------------~~~DlVLIDTaGr~~~~~----~-~l~el~~~l~~~~~~~e-~~LVl-sat~~- 298 (388)
T PRK12723 250 TQ----S-------------------KDFDLVLVDTIGKSPKDF----M-KLAEMKELLNACGRDAE-FHLAV-SSTTK- 298 (388)
T ss_pred HH----h-------------------CCCCEEEEcCCCCCccCH----H-HHHHHHHHHHhcCCCCe-EEEEE-cCCCC-
Confidence 21 1 234899999999865211 1 11222232222221223 44554 44432
Q ss_pred cchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhh
Q 017631 191 ATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILE 230 (368)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~ 230 (368)
..+..+.+...... ...=+|+||.|.......+.+++.
T Consensus 299 -~~~~~~~~~~~~~~-~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 299 -TSDVKEIFHQFSPF-SYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred -HHHHHHHHHHhcCC-CCCEEEEEeccCCCcchHHHHHHH
Confidence 33333455555432 345689999999988776777654
No 310
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.51 E-value=1.1e-06 Score=77.15 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=45.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc----hHHHHHHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT----SDAVKLSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~----~~~~~l~~~~~~~~~~~i~Vlt 214 (368)
...+||||||.+..-.=+.+- .-++..+...-.++|.+|++....... +.++.....+-..+-|+|+|+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsG------sIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfN 189 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASG------SIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFN 189 (366)
T ss_pred cCEEEEcCCCceEEEEecCCc------cchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEe
Confidence 368999999987633211111 122333344444566666554332211 2233334445566899999999
Q ss_pred cCcccCCc
Q 017631 215 KLDLMDKG 222 (368)
Q Consensus 215 K~D~~~~~ 222 (368)
|+|..+.+
T Consensus 190 K~Dv~d~~ 197 (366)
T KOG1532|consen 190 KTDVSDSE 197 (366)
T ss_pred cccccccH
Confidence 99999763
No 311
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.50 E-value=2.1e-07 Score=86.66 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=23.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
-+++|||-||+|||||||+|+|...
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Confidence 4599999999999999999999986
No 312
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.50 E-value=2.5e-07 Score=84.95 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGS 67 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~ 67 (368)
.-.+++|+|.+|+|||||+|+|.|.+...++.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~ 151 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN 151 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC
Confidence 34679999999999999999999988655544
No 313
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.49 E-value=2.8e-07 Score=84.14 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=26.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGS 67 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~ 67 (368)
...+++|||.+|+|||||+|+|++....+++.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~ 148 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN 148 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 34679999999999999999999987655544
No 314
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=4.7e-07 Score=75.04 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=62.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHH---hhCCCCCceEEeec
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSR---EVDPTGERTFGVLT 214 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~---~~~~~~~~~i~Vlt 214 (368)
...++++|.-|..+. +.+.+.|..+.+.+|+||+++...--......+.+ ..+....|+++..|
T Consensus 60 n~~f~vWDvGGq~k~-------------R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKL-------------RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred ceEEEEEecCCCccc-------------ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence 457999999998542 55688999999988877776554221211112322 33335788999999
Q ss_pred cCcccCCcc--hHHHhhhCCCccCCCCeE--EEEeCCccccccCccHH
Q 017631 215 KLDLMDKGT--NALDILEGRSYPLQHPWV--GIVNRSQADINKNVDMI 258 (368)
Q Consensus 215 K~D~~~~~~--~~~~~~~~~~~~~~~g~~--~v~~~s~~~~~~~~~~~ 258 (368)
|.|+...-+ ++.+.+.-.... ...|+ ...+.++.++.++++.+
T Consensus 127 KqD~~~als~~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~egl~wl 173 (181)
T KOG0070|consen 127 KQDLPGALSAAEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEGLDWL 173 (181)
T ss_pred hhhccccCCHHHHHhHhhhhccC-CCCcEEeeccccccccHHHHHHHH
Confidence 999874422 233333322222 24555 34455665554444433
No 315
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.47 E-value=6.1e-07 Score=86.39 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=75.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
--+|++||+.|+||||||-+|+..++-|. ...+.|.. .
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~---VP~rl~~i-~-------------------------------------- 46 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDA---VPRRLPRI-L-------------------------------------- 46 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhcccc---ccccCCcc-c--------------------------------------
Confidence 35899999999999999999999986221 11111100 0
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC----Ccccc
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN----QDLAT 192 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~----~~~~~ 192 (368)
+.. =..|...+.+||||+--.+ . ...+.+-++.+|+++++. +.+ .+...
T Consensus 47 IPa-------------dvtPe~vpt~ivD~ss~~~---~----------~~~l~~EirkA~vi~lvy-avd~~~T~D~is 99 (625)
T KOG1707|consen 47 IPA-------------DVTPENVPTSIVDTSSDSD---D----------RLCLRKEIRKADVICLVY-AVDDESTVDRIS 99 (625)
T ss_pred cCC-------------ccCcCcCceEEEecccccc---h----------hHHHHHHHhhcCEEEEEE-ecCChHHhhhhh
Confidence 000 1135556789999983211 1 344577789999666543 222 24444
Q ss_pred hHHHHHHHhhC--CCCCceEEeeccCcccCCcc
Q 017631 193 SDAVKLSREVD--PTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 193 ~~~~~l~~~~~--~~~~~~i~VltK~D~~~~~~ 223 (368)
..|+-++++.. ..+.|+|+|.||.|......
T Consensus 100 t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 100 TKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred hhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 55666776665 34799999999999986543
No 316
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=4.5e-07 Score=88.02 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=43.9
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.+++||||||...... ...+.+..+ ...... . .+ +|.+++.. ..++..+++.+.. ..+.-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D~-----~l~eeL~~L-~aa~~~-a-~l-LVLpAtss--~~Dl~eii~~f~~-~~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRDR-----ALAAQLNWL-RAARQV-T-SL-LVLPANAH--FSDLDEVVRRFAH-AKPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhhH-----HHHHHHHHH-HHhhcC-C-cE-EEEECCCC--hhHHHHHHHHHHh-hCCeEEEEecCcC
Confidence 5899999999965221 122333222 222222 2 23 33344432 3344445555443 2466799999999
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+.+++.
T Consensus 497 t~~lG~aLsv~~ 508 (559)
T PRK12727 497 TGRFGSALSVVV 508 (559)
T ss_pred ccchhHHHHHHH
Confidence 876666666654
No 317
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.45 E-value=1e-06 Score=84.93 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.+++||||||...... ...+.+..++.. ...+.-.+|| .+++. ...+..+++..+...+ ..-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~-~~~~~~~~LV-l~a~~--~~~~l~~~~~~f~~~~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDK-----RLIEELKALIEF-SGEPIDVYLV-LSATT--KYEDLKDIYKHFSRLP-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCCH-----HHHHHHHHHHhc-cCCCCeEEEE-EECCC--CHHHHHHHHHHhCCCC-CCEEEEecccc
Confidence 4899999999965322 133334444331 1133334444 44442 2334444555555433 34588999999
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+.+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 877666666654
No 318
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.44 E-value=1.1e-06 Score=79.25 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=48.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.+++||||||..... ....+++..+.. ...++-++||+.++.. .++....++.... -...=+|+||.|.
T Consensus 155 ~D~ViIDt~Gr~~~~-----~~~l~el~~~~~--~~~~~~~~LVl~a~~~---~~d~~~~~~~f~~-~~~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRA-----SETVEEMIETMG--QVEPDYICLTLSASMK---SKDMIEIITNFKD-IHIDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCC-----HHHHHHHHHHHh--hhCCCeEEEEEcCccC---HHHHHHHHHHhCC-CCCCEEEEEeecC
Confidence 589999999986522 113333333322 2255545555543322 3455556666655 3455689999999
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+.++..
T Consensus 224 t~~~G~~l~~~~ 235 (270)
T PRK06731 224 TASSGELLKIPA 235 (270)
T ss_pred CCCccHHHHHHH
Confidence 987766666654
No 319
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.43 E-value=1.8e-06 Score=71.04 Aligned_cols=58 Identities=10% Similarity=0.228 Sum_probs=36.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..++.||||||... . ...++..+|.+++++.+. .-+...+. .......--++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~---------------~-~~~~~~~Ad~~ivv~tpe-----~~D~y~~~-k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---------------S-EVDIASMADTTVVVMAPG-----AGDDIQAI-KAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---------------h-hhhHHHhCCEEEEEECCC-----chhHHHHh-hhhHhhhcCEEEEeCCC
Confidence 45899999999743 1 234778899777666554 12222222 22333344589999998
No 320
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.40 E-value=5.8e-07 Score=84.34 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeecc
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK 215 (368)
++...+.||||||.-+.... +.+.+.-.|.++|+|++. ...-.|..+ +++.+-..+-+-|+|+||
T Consensus 65 ~~~~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVDA~-EGpMPQTrF-VlkKAl~~gL~PIVVvNK 129 (603)
T COG1217 65 YNGTRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVDAS-EGPMPQTRF-VLKKALALGLKPIVVINK 129 (603)
T ss_pred cCCeEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEEcc-cCCCCchhh-hHHHHHHcCCCcEEEEeC
Confidence 34468999999999876543 566677789888777554 444445444 555666678888999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|.-..
T Consensus 130 iDrp~A 135 (603)
T COG1217 130 IDRPDA 135 (603)
T ss_pred CCCCCC
Confidence 999743
No 321
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.40 E-value=3.6e-06 Score=78.11 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHH---Hhh-cCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVR---SYI-EKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~Vl 213 (368)
..+++||||||....... +.+++..+.+ ..+ ..++-.+||+.+ +.. ..... -+......-...-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~~-----l~~eL~~~~~v~~~~~~~~p~~~~LVl~a-~~g--~~~~~-~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTN-----LMEELKKIKRVIKKADPDAPHEVLLVLDA-TTG--QNALS-QAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCHH-----HHHHHHHHHHHHhhhcCCCCceEEEEEEC-CCC--hHHHH-HHHHHHhhCCCCEEEE
Confidence 358999999998663322 4444444322 222 245655555544 422 12222 2222222224567999
Q ss_pred ccCcccCCcchHHHhhh
Q 017631 214 TKLDLMDKGTNALDILE 230 (368)
Q Consensus 214 tK~D~~~~~~~~~~~~~ 230 (368)
||.|.......+.++..
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998877666666654
No 322
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.40 E-value=5e-07 Score=78.26 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.+|+++|-||+|||||+..|+...
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcch
Confidence 4689999999999999999998754
No 323
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=3.4e-07 Score=73.50 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-c-ccchHHHHHHHhhCCC-CCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-D-LATSDAVKLSREVDPT-GERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~-~~~~~~~~l~~~~~~~-~~~~i~VltK 215 (368)
.++.||||+|. +.+++++..|.+.+=.++|+.+-.+. . +....|+.-++...-. ..-++++.||
T Consensus 67 ihLQlWDTAGQ-------------ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 67 IHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEEeeeccccH-------------HHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCc
Confidence 37889999997 44688899999988777766544332 1 1111222212221222 3457788999
Q ss_pred CcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 216 LDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 216 ~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
+|+.+...--.+.........+++|+....-.+.++++.++.+..+.
T Consensus 134 ~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 134 ADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred cchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHH
Confidence 99985422111111112334567888887776665555555544443
No 324
>PRK14974 cell division protein FtsY; Provisional
Probab=98.39 E-value=1.5e-06 Score=80.85 Aligned_cols=81 Identities=31% Similarity=0.395 Sum_probs=47.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.+++||||||..... ..+.+.+..+.+ ..++|.++||+ ++... ++....++.....-...-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd~~iLVl-~a~~g---~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPDLVIFVG-DALAG---NDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCceEEEee-ccccc---hhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 479999999997632 224444444322 23577666555 43322 23333334333333456799999999
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+.++..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 887666666544
No 325
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2.3e-06 Score=79.91 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=81.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC--CCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG--RDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g--~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
-...+|+-+|-||||||-+.|+- .-+ ..+|.+..+ ++. .....||..+.+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~r-------k~~-------------~~a~SDWM~iEk------ 63 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGR-------KSG-------------KHAKSDWMEIEK------ 63 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchh--hhcceeeec-------cCC-------------cccccHHHHHHH------
Confidence 36799999999999999999873 222 111111100 000 011122322221
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+++|-....+.+.+ ....++|.||||.-+.+.. +.+.+.-+|+.++|++++. ++. ..
T Consensus 64 ------qRGISVtsSVMqF~Y-~~~~iNLLDTPGHeDFSED-------------TYRtLtAvDsAvMVIDaAK-GiE-~q 121 (528)
T COG4108 64 ------QRGISVTSSVMQFDY-ADCLVNLLDTPGHEDFSED-------------TYRTLTAVDSAVMVIDAAK-GIE-PQ 121 (528)
T ss_pred ------hcCceEEeeEEEecc-CCeEEeccCCCCccccchh-------------HHHHHHhhheeeEEEeccc-Ccc-HH
Confidence 233433333333333 3457899999999765432 4555667888887766554 444 44
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.++|.+-....+.|++-.+||+|....
T Consensus 122 T~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 122 TLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred HHHHHHHHhhcCCceEEEeeccccccC
Confidence 566888888889999999999999743
No 326
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=1.5e-06 Score=81.88 Aligned_cols=132 Identities=19% Similarity=0.312 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..+.++.+--.|||||-.+|+... +..+.+. .+.++-+.++
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~Re-------------------------------m~~Q~LDsMd 50 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSERE-------------------------------MRAQVLDSMD 50 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcChHH-------------------------------HHHHhhhhhh
Confidence 45668889999999999999998765 2222111 1112111122
Q ss_pred hhhCCCCCCCC--CceEEEEecC--CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc
Q 017631 116 RVTGKSKQISP--VPIHLSIYSP--NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA 191 (368)
Q Consensus 116 ~~~~~~~~~s~--~~i~i~i~~~--~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~ 191 (368)
-. ++++++- ..+++..... ....+.||||||..+.+.. +.+.+.-+...+|+| +++++..
T Consensus 51 iE--RERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalLvV-DAsQGve 114 (603)
T COG0481 51 IE--RERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALLVV-DASQGVE 114 (603)
T ss_pred hH--hhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEEEE-ECccchH
Confidence 11 2344443 3344443332 3467899999999986644 233444555566555 5667787
Q ss_pred chHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 192 TSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.|....+...++. +--++-|+||+|+-..
T Consensus 115 AQTlAN~YlAle~-~LeIiPViNKIDLP~A 143 (603)
T COG0481 115 AQTLANVYLALEN-NLEIIPVLNKIDLPAA 143 (603)
T ss_pred HHHHHHHHHHHHc-CcEEEEeeecccCCCC
Confidence 7777666655554 5788999999999743
No 327
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.35 E-value=5.4e-07 Score=80.19 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=32.9
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH----HHHhhCCCCCceEEeecc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK----LSREVDPTGERTFGVLTK 215 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~----l~~~~~~~~~~~i~VltK 215 (368)
++.|+||||..+.-.. ......++...-++...+++++.++..-........ -+...-..+.|.+.|+||
T Consensus 92 ~y~l~DtPGQiElf~~------~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH------SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHH------SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--
T ss_pred cEEEEeCCCCEEEEEe------chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeec
Confidence 7899999998763321 111233333333345545555555442111111111 011112247999999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.++
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 999974
No 328
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1e-06 Score=72.04 Aligned_cols=112 Identities=12% Similarity=0.192 Sum_probs=69.2
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cccc--hHHHHHHHhhCCCCCceEEeec
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DLAT--SDAVKLSREVDPTGERTFGVLT 214 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~~--~~~~~l~~~~~~~~~~~i~Vlt 214 (368)
...+.+||+-|.-. .+++...|...+|++|.++++.+. .+.. .....+...-.-.+.|.++..|
T Consensus 68 ~~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 34789999988732 378889999999988877766653 2211 1122233444456899999999
Q ss_pred cCcccCCcc--hHHHhhh--CCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 215 KLDLMDKGT--NALDILE--GRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 215 K~D~~~~~~--~~~~~~~--~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
|-|+-...+ ++..... .......+.+.++....++++++++..+....
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 999975432 2222222 11222334566777776777666666655443
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.34 E-value=2.8e-06 Score=70.67 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCcc
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLP 64 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p 64 (368)
..+++++|.+|+||||++|+|.+....+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~ 128 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSAS 128 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 4678999999999999999999866433
No 330
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.6e-06 Score=84.42 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=81.4
Q ss_pred ccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHH
Q 017631 33 LWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQE 112 (368)
Q Consensus 33 ~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 112 (368)
....+..|+++|.-.+|||+|+..|.+... |... .+++..++.++.- -
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~l---------------------~----- 171 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDTL---------------------F----- 171 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecc-cccc-----ccccccccccccc---------------------h-----
Confidence 333456699999999999999999998874 4332 2222222111100 0
Q ss_pred HHhhhhCCCCCCCCCceEEEEecCC--CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc
Q 017631 113 ETDRVTGKSKQISPVPIHLSIYSPN--VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL 190 (368)
Q Consensus 113 ~~~~~~~~~~~~s~~~i~i~i~~~~--~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~ 190 (368)
.++.. +-.+-..++++-+.... ..-++++||||....... +...++-+|.++|+|+.+ .+.
T Consensus 172 -~E~eR--g~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE-------------~ta~l~~sDgvVlvvDv~-EGV 234 (971)
T KOG0468|consen 172 -YEQER--GCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDE-------------TTASLRLSDGVVLVVDVA-EGV 234 (971)
T ss_pred -hhHhc--CceEeecceEEEEecCcCceeeeeeecCCCcccchHH-------------HHHHhhhcceEEEEEEcc-cCc
Confidence 01111 11222233344333322 236889999998774322 345677899887776554 344
Q ss_pred cchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 191 ATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.-.. .++++.+-....++.+|+||+|.+
T Consensus 235 mlnt-Er~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 235 MLNT-ERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeeH-HHHHHHHHhccCcEEEEEehhHHH
Confidence 3333 346677767789999999999996
No 331
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.32 E-value=9.7e-07 Score=83.62 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 332
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=7.5e-06 Score=79.10 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
+.-.++|+|+..||||||+-.|+..- -+.+....+..--+-. +...++-.|++.+...+ .+
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydL-g~i~~~~m~kl~~es~--~~Gk~Sf~yawiLDeT~----------------eE 236 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDL-GEISSRSMHKLERESK--NLGKSSFAYAWILDETK----------------EE 236 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHh-cCccHHHHHHHHHHHH--hcCCcceeeeEEeccch----------------hh
Confidence 34559999999999999999987542 1211111100000000 00011122233332111 01
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-----
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL----- 190 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~----- 190 (368)
+.++++-++-...+. +....++|+|+||.-+.-+ + +..-...+|+.||||+.....+
T Consensus 237 ----RerGvTm~v~~~~fe-s~~~~~tliDaPGhkdFi~------------n-mi~g~sqaD~avLvvd~s~~~FE~gfd 298 (603)
T KOG0458|consen 237 ----RERGVTMDVKTTWFE-SKSKIVTLIDAPGHKDFIP------------N-MISGASQADVAVLVVDASTGEFESGFD 298 (603)
T ss_pred ----hhcceeEEeeeEEEe-cCceeEEEecCCCccccch------------h-hhccccccceEEEEEECCcchhhhccC
Confidence 234555555555444 5567999999999644322 2 2344567898888876643322
Q ss_pred ---cchHHHHHHHhhCCCCCceEEeeccCcccCCcch-HH-------Hhhh-CCC-ccCCCCeEEEEeCCcccc
Q 017631 191 ---ATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTN-AL-------DILE-GRS-YPLQHPWVGIVNRSQADI 251 (368)
Q Consensus 191 ---~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~-~~-------~~~~-~~~-~~~~~g~~~v~~~s~~~~ 251 (368)
...+...+++.+. -...|+++||+|+++=.++ .. .++. .-. ......|+++...+++++
T Consensus 299 ~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 299 PGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred CCCchHHHHHHHHHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 1223444555554 4678999999999963322 22 2221 111 112246777777666654
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.31 E-value=2.3e-06 Score=77.78 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=45.6
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHH---hh-cCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRS---YI-EKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~Vl 213 (368)
..+++||||||..... ....+++..+... .+ ..+|-.+||+.. ... . +....+......-...-+|+
T Consensus 154 ~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a-~~~--~-~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLDA-TTG--Q-NALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEEC-CCC--H-HHHHHHHHHHhhCCCCEEEE
Confidence 3589999999987632 2233444443221 11 236656665544 321 2 22222222222123567999
Q ss_pred ccCcccCCcchHHHhhh
Q 017631 214 TKLDLMDKGTNALDILE 230 (368)
Q Consensus 214 tK~D~~~~~~~~~~~~~ 230 (368)
||+|.......+.++..
T Consensus 225 TKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAY 241 (272)
T ss_pred EccCCCCCccHHHHHHH
Confidence 99999877666666544
No 334
>PRK13796 GTPase YqeH; Provisional
Probab=98.31 E-value=8.3e-07 Score=84.18 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..++|||.+|+|||||||+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 369999999999999999999754
No 335
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=2.6e-06 Score=76.91 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..+++|..|+|||||+|+|.+..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 58999999999999999999854
No 336
>PRK00098 GTPase RsgA; Reviewed
Probab=98.29 E-value=2.9e-06 Score=78.32 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
.++++|.+|+|||||+|+|+|...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcC
Confidence 599999999999999999999764
No 337
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=2.2e-06 Score=81.34 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc-CCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE-KPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+++||||||...... ...+.+..+....-. .+.-.+||+.+ +.. ..+....++.... -...=+|+||.
T Consensus 299 ~~D~VLIDTaGr~~rd~-----~~l~eL~~~~~~~~~~~~~e~~LVLsA-t~~--~~~~~~~~~~f~~-~~~~glIlTKL 369 (432)
T PRK12724 299 GSELILIDTAGYSHRNL-----EQLERMQSFYSCFGEKDSVENLLVLSS-TSS--YHHTLTVLKAYES-LNYRRILLTKL 369 (432)
T ss_pred CCCEEEEeCCCCCccCH-----HHHHHHHHHHHhhcCCCCCeEEEEEeC-CCC--HHHHHHHHHHhcC-CCCCEEEEEcc
Confidence 35889999999864221 133333333222211 22234555544 322 2334444444433 24456899999
Q ss_pred cccCCcchHHHhhh
Q 017631 217 DLMDKGTNALDILE 230 (368)
Q Consensus 217 D~~~~~~~~~~~~~ 230 (368)
|.......+.++..
T Consensus 370 DEt~~~G~il~i~~ 383 (432)
T PRK12724 370 DEADFLGSFLELAD 383 (432)
T ss_pred cCCCCccHHHHHHH
Confidence 99987776666654
No 338
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=9.2e-06 Score=64.94 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-|-.++++|..|+|||.|+..++..+|- -+ +...+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfk-Dd----ssHTi---------------------------------------- 42 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFK-DD----SSHTI---------------------------------------- 42 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhc-cc----cccee----------------------------------------
Confidence 3678999999999999999999987761 11 10000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--h
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT--S 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~--~ 193 (368)
+..|....+.+ +-....+.||||.|. +.+++.+++|.+.+-..+||.+..+.+.-+ .
T Consensus 43 -----GveFgSrIinV---GgK~vKLQIWDTAGQ-------------ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLt 101 (214)
T KOG0086|consen 43 -----GVEFGSRIVNV---GGKTVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYDITSRDSFNALT 101 (214)
T ss_pred -----eeeecceeeee---cCcEEEEEEeecccH-------------HHHHHHHHHHhccccceEEEEeccchhhHHHHH
Confidence 00111111111 123346889999997 446889999999888788777665554322 2
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.|+.-++.+.+...-++++.||-|+-..
T Consensus 102 nWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 102 NWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 3444445555555556667799998754
No 339
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.27 E-value=4.9e-06 Score=73.41 Aligned_cols=120 Identities=19% Similarity=0.287 Sum_probs=66.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCc--ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSG--IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~--~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+|+++|..+|||||..+.+.+.- .|.+.. ..|..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCce-----------------------------------------
Confidence 58999999999999999998763 243321 1111111
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
...+...+..++.|||.||.......- +...-....++++++|.|++..+.++...
T Consensus 39 -------------~~~v~~~~~~~l~iwD~pGq~~~~~~~--------~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 -------------KSHVRFLSFLPLNIWDCPGQDDFMENY--------FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp -------------EEEEECTTSCEEEEEEE-SSCSTTHTT--------HTCCHHHHHCTESEEEEEEETT-STCHHHHHH
T ss_pred -------------EEEEecCCCcEEEEEEcCCcccccccc--------ccccHHHHHhccCEEEEEEEcccccHHHHHHH
Confidence 112434456689999999987533210 01112345688887776654433443222
Q ss_pred --HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 --DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 --~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.....+.+..| +..+.+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 12223445555 57788999999998654
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.24 E-value=4.9e-06 Score=76.35 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPR 65 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~ 65 (368)
..++++|.+|+|||||+|+|+|.....+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~ 189 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLAT 189 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccc
Confidence 5699999999999999999999875433
No 341
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.22 E-value=5.4e-06 Score=65.45 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=76.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-+|.++|--||||||++..|.+.+. +.-.++.
T Consensus 18 irilllGldnAGKTT~LKqL~sED~--~hltpT~---------------------------------------------- 49 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDP--RHLTPTN---------------------------------------------- 49 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCCh--hhccccC----------------------------------------------
Confidence 5799999999999999999999874 2211111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---H
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---D 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~ 194 (368)
+|+.. .+.+.+..+++++|.-|-.. ++.....|..+.|.+|+|++++....... +
T Consensus 50 -----GFn~k----~v~~~g~f~LnvwDiGGqr~-------------IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~e 107 (185)
T KOG0074|consen 50 -----GFNTK----KVEYDGTFHLNVWDIGGQRG-------------IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEE 107 (185)
T ss_pred -----CcceE----EEeecCcEEEEEEecCCccc-------------cchhhhhhhhccceEEEEEeCCchHhHHHHHHH
Confidence 12111 13344556899999999754 25567899999998887777554432222 2
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
...++...+....|+.+--||-|++..
T Consensus 108 l~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 108 LVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHhhhhhhhccceeehhhhhHHHhh
Confidence 223444445556888888899999743
No 342
>PTZ00099 rab6; Provisional
Probab=98.22 E-value=4e-06 Score=71.24 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=65.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHHHHHHhhCCCCCceEEeecc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~~l~~~~~~~~~~~i~VltK 215 (368)
...+.|+||||... +..+...|++.+|++|+|++..+.. +.. ..+...+........|+++|.||
T Consensus 28 ~v~l~iwDt~G~e~-------------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER-------------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH-------------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 35789999999844 2445678899999887766544321 111 12222222222335778999999
Q ss_pred CcccCCcc-hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHHHHh
Q 017631 216 LDLMDKGT-NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRREHE 266 (368)
Q Consensus 216 ~D~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ 266 (368)
+|+..... ...+... ........|+.+...++.++...+..+.....+.+
T Consensus 95 ~DL~~~~~v~~~e~~~-~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQ-KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99964211 1111111 11122334667777777777666666655554433
No 343
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.19 E-value=1.3e-06 Score=84.85 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=43.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.++++|||+|....... +.+.... ...... +.-.+|++..... .....+.++..... ...-+|+||+|.
T Consensus 335 ~d~VLIDTaGr~~~d~~-----~~e~~~~-l~~~~~-p~e~~LVLdAt~~---~~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRM-----VSEQIAM-LHGAGA-PVKRLLLLNATSH---GDTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhhHH-----HHHHHHH-HhccCC-CCeeEEEEeCCCc---HHHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 47899999998652211 1122221 112211 2224445443322 23344455555543 355678999999
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+.+++.
T Consensus 404 t~~~G~~l~i~~ 415 (484)
T PRK06995 404 AASLGGALDVVI 415 (484)
T ss_pred cccchHHHHHHH
Confidence 987776777655
No 344
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.17 E-value=1.4e-05 Score=77.10 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=46.6
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
+++||||||.... .+.+.+++..+. .+..+|.+++++.+ ... ++....++.....-...-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~-----d~~lm~El~~l~--~~~~pdevlLVvda-~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHAL-----EEDLIEEMKEIK--EAVKPDEVLLVIDA-TIG---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccc-----hHHHHHHHHHHH--HHhcccceeEEEec-ccc---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 7999999998653 222334343331 23356756665554 332 344445555443333456889999998
Q ss_pred CCcchHHHhhh
Q 017631 220 DKGTNALDILE 230 (368)
Q Consensus 220 ~~~~~~~~~~~ 230 (368)
.....+.++..
T Consensus 246 a~~G~~ls~~~ 256 (437)
T PRK00771 246 AKGGGALSAVA 256 (437)
T ss_pred CcccHHHHHHH
Confidence 77665655543
No 345
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.8e-05 Score=62.36 Aligned_cols=120 Identities=16% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-+-..+++|+.|+|||.|+..++..+|+ ..||.++-.
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfm-------adcphtigv------------------------------------ 46 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-------ADCPHTIGV------------------------------------ 46 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHh-------hcCCcccce------------------------------------
Confidence 3567899999999999999999998873 334422111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc--ch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA--TS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~--~~ 193 (368)
.|.. -.+++.+ ....+.+|||.|. +.++..+++|.+.+-..+++.+-.....- .+
T Consensus 47 -------efgt--riievsg-qkiklqiwdtagq-------------erfravtrsyyrgaagalmvyditrrstynhls 103 (215)
T KOG0097|consen 47 -------EFGT--RIIEVSG-QKIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS 103 (215)
T ss_pred -------ecce--eEEEecC-cEEEEEEeecccH-------------HHHHHHHHHHhccccceeEEEEehhhhhhhhHH
Confidence 0000 1122322 2346889999997 34578899999988766555433222111 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.|+.-++.+..-..-++++.||.|+-+.
T Consensus 104 swl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 104 SWLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HHHhhhhccCCCceEEEEecchhhhhhc
Confidence 3333333333334446677899999754
No 346
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.9e-05 Score=78.04 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-|-+.|+|+-.+|||-|+..|-|.++.-...|..|... +..+.+...++....
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqI----------------------gAt~fp~~ni~e~tk---- 527 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQI----------------------GATYFPAENIREKTK---- 527 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeec----------------------cccccchHHHHHHHH----
Confidence 569999999999999999999999877444444433221 222233333333222
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.+.... -.....|.+.+|||||.-+ +.++-.+....+|.+||+|+ ...++..+..
T Consensus 528 ~~~~~~-----------K~~~kvPg~lvIdtpghEs-------------FtnlRsrgsslC~~aIlvvd-ImhGlepqti 582 (1064)
T KOG1144|consen 528 ELKKDA-----------KKRLKVPGLLVIDTPGHES-------------FTNLRSRGSSLCDLAILVVD-IMHGLEPQTI 582 (1064)
T ss_pred HHHhhh-----------hhhcCCCeeEEecCCCchh-------------hhhhhhccccccceEEEEee-hhccCCcchh
Confidence 211100 0012456789999999633 25555566778997777664 3445655554
Q ss_pred HHHHHhhCCCCCceEEeeccCcccC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
. -+..+.....|+|+.+||+|.+-
T Consensus 583 E-Si~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 583 E-SINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred H-HHHHHHhcCCCeEEeehhhhhhc
Confidence 3 44555666799999999999973
No 347
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.12 E-value=2.7e-05 Score=82.11 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
.|.++||||||... +..+...+...+|++++|+ +++.++..+. ...+..+...+.|+++|+||+|
T Consensus 525 ~p~i~fiDTPGhe~-------------F~~lr~~g~~~aDivlLVV-Da~~Gi~~qT-~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHEA-------------FTSLRKRGGSLADLAVLVV-DINEGFKPQT-IEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEE-ECcccCCHhH-HHHHHHHHHcCCCEEEEEECCC
Confidence 45799999999633 2344455678899777665 4444443333 2344444555789999999999
Q ss_pred ccC
Q 017631 218 LMD 220 (368)
Q Consensus 218 ~~~ 220 (368)
+.+
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 348
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.11 E-value=3.8e-05 Score=66.49 Aligned_cols=86 Identities=24% Similarity=0.370 Sum_probs=53.6
Q ss_pred CCeEEEeC-CCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH-HHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDL-PGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD-AVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDt-PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~-~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+++||| +|+ +.+-+...+.+|.+|.|++++...+.+.. ..+++.++. -+|+.+|+||+
T Consensus 134 ~e~VivDtEAGi----------------EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv 195 (255)
T COG3640 134 YEVVIVDTEAGI----------------EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKV 195 (255)
T ss_pred CcEEEEecccch----------------hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeec
Confidence 37889998 666 55566778899988877777665444332 223444443 39999999999
Q ss_pred cccCCcchHHHhhhCCCccCCCCeEEEEeCCc
Q 017631 217 DLMDKGTNALDILEGRSYPLQHPWVGIVNRSQ 248 (368)
Q Consensus 217 D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~ 248 (368)
|.. +...... ...+.+....+.+.+.
T Consensus 196 ~e~--e~~~~~~----~~~~~~~vlg~iP~d~ 221 (255)
T COG3640 196 DEE--EELLREL----AEELGLEVLGVIPYDP 221 (255)
T ss_pred cch--hHHHHhh----hhccCCeEEEEccCCH
Confidence 976 2212222 2334455566666554
No 349
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.11 E-value=6.8e-06 Score=66.11 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=71.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-.|+++|.--+|||||+=.....+|. |. -+..++.....
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn------~k------------------------------HlsTlQASF~~----- 52 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFN------CK------------------------------HLSTLQASFQN----- 52 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcc------hh------------------------------hHHHHHHHHhh-----
Confidence 46999999999999999999887761 00 01111211111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--hHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT--SDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~--~~~ 195 (368)
..+. +.. ...++.||||.|.-.. ..+---|.+..|..+||.+-...+.-. ..|
T Consensus 53 ---------kk~n--~ed-~ra~L~IWDTAGQErf-------------HALGPIYYRgSnGalLVyDITDrdSFqKVKnW 107 (218)
T KOG0088|consen 53 ---------KKVN--VED-CRADLHIWDTAGQERF-------------HALGPIYYRGSNGALLVYDITDRDSFQKVKNW 107 (218)
T ss_pred ---------cccc--ccc-ceeeeeeeeccchHhh-------------hccCceEEeCCCceEEEEeccchHHHHHHHHH
Confidence 1111 111 3358999999998442 344456889999888776554433211 122
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..-++.......-.++|.||+|+-..
T Consensus 108 V~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 108 VLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred HHHHHHHhCCeeEEEEecCcccHHHh
Confidence 22334444455678899999999744
No 350
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=8.1e-06 Score=71.87 Aligned_cols=134 Identities=19% Similarity=0.313 Sum_probs=80.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-.|..||.+|-|||||++.|.+.+| -. .+++..--.+.++..+ ..+
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f-~~--~p~~H~~~~V~L~~~T-------------------------------yel 88 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF-ES--EPSTHTLPNVKLQANT-------------------------------YEL 88 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc-CC--CCCccCCCCceeecch-------------------------------hhh
Confidence 3499999999999999999999876 11 2333322112221111 000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCC-hhHHHHHHHHHHHhhc---------------CCCeEEE
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQP-ESVVLEIETMVRSYIE---------------KPNCLIL 181 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~d~iil 181 (368)
. . +.-...++++||.|+.+--.++.+ ..+.+.+......|+. +.++.+.
T Consensus 89 q-------E--------snvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLY 153 (406)
T KOG3859|consen 89 Q-------E--------SNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLY 153 (406)
T ss_pred h-------h--------cCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 0 0 111125899999999875443222 2355555555555543 4566666
Q ss_pred EEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 182 AITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 182 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
++.|....+..-+.. .++.++. ..++|-|+-|.|.....
T Consensus 154 FI~PTGH~LKslDLv-tmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 154 FISPTGHSLKSLDLV-TMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred EecCCCcchhHHHHH-HHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 777877665444433 4556654 57889999999998653
No 351
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=4.2e-05 Score=60.47 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=54.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhC---CCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVD---PTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~---~~~~~~i~VltK 215 (368)
..+.++|.-|... ++.+.+.|......+|+|++++..+-......++-+.+. ....++++..||
T Consensus 61 ~kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANk 127 (180)
T KOG0071|consen 61 VKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANK 127 (180)
T ss_pred eEEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecC
Confidence 4578899999854 377889999999999988887765332222222323232 224567777899
Q ss_pred CcccCCc--chHHHhhhCCCccCCCCeE
Q 017631 216 LDLMDKG--TNALDILEGRSYPLQHPWV 241 (368)
Q Consensus 216 ~D~~~~~--~~~~~~~~~~~~~~~~g~~ 241 (368)
-|+.+.- .++.++++-+. .....|.
T Consensus 128 QDlp~A~~pqei~d~leLe~-~r~~~W~ 154 (180)
T KOG0071|consen 128 QDLPDAMKPQEIQDKLELER-IRDRNWY 154 (180)
T ss_pred cccccccCHHHHHHHhcccc-ccCCccE
Confidence 9997542 23455544222 2334554
No 352
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.07 E-value=4.8e-05 Score=66.41 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.+|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999864
No 353
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.06 E-value=5.7e-06 Score=67.93 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=43.7
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhC--CCCCceEEeeccCc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVD--PTGERTFGVLTKLD 217 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~--~~~~~~i~VltK~D 217 (368)
.+.+|||.|.- ++..++..|.+.+.+.+||...... .+-.....+-..+. -...|+++|-||+|
T Consensus 70 r~mlWdtagqe-------------EfDaItkAyyrgaqa~vLVFSTTDr-~SFea~~~w~~kv~~e~~~IPtV~vqNKID 135 (246)
T KOG4252|consen 70 RSMLWDTAGQE-------------EFDAITKAYYRGAQASVLVFSTTDR-YSFEATLEWYNKVQKETERIPTVFVQNKID 135 (246)
T ss_pred HHHHHHhccch-------------hHHHHHHHHhccccceEEEEecccH-HHHHHHHHHHHHHHHHhccCCeEEeeccch
Confidence 34579999873 3467889999999988876543221 11111222222221 23689999999999
Q ss_pred ccCC
Q 017631 218 LMDK 221 (368)
Q Consensus 218 ~~~~ 221 (368)
+++.
T Consensus 136 lved 139 (246)
T KOG4252|consen 136 LVED 139 (246)
T ss_pred hhHh
Confidence 9965
No 354
>PRK10867 signal recognition particle protein; Provisional
Probab=98.04 E-value=2.5e-05 Score=75.26 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=45.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..+++||||||..... +.+.+.+..+. ..+ .++-+++|+.+ .. .++....++.....-..+-+|+||+|
T Consensus 183 ~~DvVIIDTaGrl~~d-----~~lm~eL~~i~-~~v-~p~evllVlda-~~---gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHID-----EELMDELKAIK-AAV-NPDEILLVVDA-MT---GQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccC-----HHHHHHHHHHH-Hhh-CCCeEEEEEec-cc---HHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 3589999999986521 22334433332 223 45556655544 32 34555555554433344568899999
Q ss_pred ccCCcchHHHhh
Q 017631 218 LMDKGTNALDIL 229 (368)
Q Consensus 218 ~~~~~~~~~~~~ 229 (368)
.......+.++.
T Consensus 252 ~~~rgG~alsi~ 263 (433)
T PRK10867 252 GDARGGAALSIR 263 (433)
T ss_pred CcccccHHHHHH
Confidence 876655555543
No 355
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=3.2e-05 Score=68.83 Aligned_cols=131 Identities=18% Similarity=0.314 Sum_probs=74.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
--.|+.+|..+.|||||..||++.-. ..+ .....+++++..+.+ +
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la-~~~------------------------------~~~~~~y~~id~aPe---E- 56 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLA-KKG------------------------------GAEAKAYDQIDNAPE---E- 56 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHH-hhc------------------------------cccccchhhhccCch---H-
Confidence 34589999999999999999987421 010 011122222222211 1
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc-hHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT-SDA 195 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~-~~~ 195 (368)
+.++++-+...++.... ..++..||-||.-+ .+.+|+-. ....|..||+|.++..+... -+.
T Consensus 57 ---k~rGITIntahveyet~-~rhyahVDcPGHaD------------YvKNMItg-AaqmDgAILVVsA~dGpmPqTrEH 119 (394)
T COG0050 57 ---KARGITINTAHVEYETA-NRHYAHVDCPGHAD------------YVKNMITG-AAQMDGAILVVAATDGPMPQTREH 119 (394)
T ss_pred ---hhcCceeccceeEEecC-CceEEeccCCChHH------------HHHHHhhh-HHhcCccEEEEEcCCCCCCcchhh
Confidence 23445555555555443 45889999999843 23444333 23567778777665433222 122
Q ss_pred HHHHHhhCCCCC-ceEEeeccCcccCCc
Q 017631 196 VKLSREVDPTGE-RTFGVLTKLDLMDKG 222 (368)
Q Consensus 196 ~~l~~~~~~~~~-~~i~VltK~D~~~~~ 222 (368)
.-+++++ +. .+++++||+|+++..
T Consensus 120 iLlarqv---Gvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 120 ILLARQV---GVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhhhc---CCcEEEEEEecccccCcH
Confidence 2244444 44 677789999999754
No 356
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.02 E-value=6.7e-06 Score=78.33 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=24.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
.-.|++||-||+||||+||+|.|.+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 56799999999999999999999986
No 357
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00011 Score=77.86 Aligned_cols=163 Identities=21% Similarity=0.164 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCC
Q 017631 6 SLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPG 85 (368)
Q Consensus 6 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~ 85 (368)
++.++-.++.+++..++.......-.+-.+++|+.+|||++|+||||++.- +|.+| |-.... +.. .
T Consensus 94 ~~~~l~~~~~e~~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~-sgl~F-pl~~~~--~~~--------~-- 159 (1188)
T COG3523 94 ELEELNAQLGEALRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLN-SGLQF-PLAEQM--GAL--------G-- 159 (1188)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCcccchhhcCCceEEecCCCCCcchHHhc-ccccC-cchhhh--ccc--------c--
Confidence 344455555555555554211111233446999999999999999999987 67764 332210 000 0
Q ss_pred cccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCC--CCChhHHH
Q 017631 86 LQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVE--GQPESVVL 163 (368)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~--~~~~~~~~ 163 (368)
....| +-....+-....++|||.|-...... ......+.
T Consensus 160 -----------------------------~~~~g----------T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 160 -----------------------------LAGPG----------TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred -----------------------------ccCCC----------CcccCcccccceEEEcCCcceecccCcchhhHHHHH
Confidence 00000 00011223346889999997764431 11222334
Q ss_pred HHHHHHHHh--hcCCCeEEEEEeeCCCcccc-hHHHHHH-------Hhh---CCCCCceEEeeccCcccCC
Q 017631 164 EIETMVRSY--IEKPNCLILAITPANQDLAT-SDAVKLS-------REV---DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 164 ~~~~~~~~~--~~~~d~iil~v~~~~~~~~~-~~~~~l~-------~~~---~~~~~~~i~VltK~D~~~~ 221 (368)
.+-.+.++| .+.-|.||++++-+.-.-.. .+...++ +++ -...-|+.+++||.|+++-
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 444556666 44778888776542211111 1110111 112 2346899999999999964
No 358
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.6e-05 Score=70.26 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.|.+||+--.|||||..||+|.-
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvw 34 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVW 34 (415)
T ss_pred eEeeeeeecccchhhheehhhcee
Confidence 359999999999999999999975
No 359
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=4.9e-05 Score=71.50 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=59.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCC-CceEEeeccCc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTG-ERTFGVLTKLD 217 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~-~~~i~VltK~D 217 (368)
..+++||.||.-+ .+.+| ...+...|+.+||| ++++....+... .+..++..+ ++.++|+||+|
T Consensus 50 ~~~~fIDvpgh~~------------~i~~m-iag~~~~d~alLvV-~~deGl~~qtgE-hL~iLdllgi~~giivltk~D 114 (447)
T COG3276 50 GVMGFIDVPGHPD------------FISNL-LAGLGGIDYALLVV-AADEGLMAQTGE-HLLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred CceEEeeCCCcHH------------HHHHH-HhhhcCCceEEEEE-eCccCcchhhHH-HHHHHHhcCCCceEEEEeccc
Confidence 3789999999943 22333 34456778776655 555444444433 233344444 56699999999
Q ss_pred ccCCcc---hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 218 LMDKGT---NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 218 ~~~~~~---~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
.+++.. ...+++.... ......+.++..+.+|++++.+.+..+.
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 997642 1223333222 1122344555555555555555544443
No 360
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2.9e-05 Score=71.21 Aligned_cols=144 Identities=26% Similarity=0.402 Sum_probs=76.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCccc----ccccEEEEEEecCCCcccceeeecCC-CCcccChHHHHHHHHHH
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIV----TRRPLVLQLHKTEPGLQEYAEFLHLP-KKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~----t~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 113 (368)
+++|+|.-.+|||||+--|+.... .-|.|.. -|.|-+++.-++ +....+.++.+ ...+.++++...+
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrT---Ssis~evlGFd~~g~vVNY~~~~ta---- 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRT---SSISNEVLGFDNRGKVVNYAQNMTA---- 240 (591)
T ss_pred EEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcc---cccchhcccccccccccchhhcccH----
Confidence 599999999999999999887663 4444321 133333331111 11111122111 1233334333211
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC--ccc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ--DLA 191 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~--~~~ 191 (368)
+. +......-+++||+.|...-... .+..+ ..| .+|+.+|+|. ++. .+.
T Consensus 241 -EE----------------i~e~SSKlvTfiDLAGh~kY~~T--------Ti~gL-tgY--~Ph~A~LvVs-A~~Gi~~t 291 (591)
T KOG1143|consen 241 -EE----------------IVEKSSKLVTFIDLAGHAKYQKT--------TIHGL-TGY--TPHFACLVVS-ADRGITWT 291 (591)
T ss_pred -HH----------------HHhhhcceEEEeecccchhhhee--------eeeec-ccC--CCceEEEEEE-cCCCCccc
Confidence 11 11122236899999997541110 00111 122 4565665554 333 455
Q ss_pred chHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 192 TSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+.+.+.++..+ ..|+++++||+|++++.
T Consensus 292 TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 292 TREHLGLIAAL---NIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred cHHHHHHHHHh---CCCeEEEEEeeccccch
Confidence 56666666655 48999999999999873
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.97 E-value=2.3e-05 Score=66.34 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=42.5
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..++++|||||..... ....+.+..+. . ...++.+++++.+ ... .+....+......-...-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~-~-~~~~~~~~lVv~~-~~~---~~~~~~~~~~~~~~~~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKIK-R-VVKPDEVLLVVDA-MTG---QDAVNQAKAFNEALGITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHHH-h-hcCCCeEEEEEEC-CCC---hHHHHHHHHHHhhCCCCEEEEECCc
Confidence 3478999999986521 11222222221 1 2347767766654 322 2222333333221124678889999
Q ss_pred ccCCcchHHHh
Q 017631 218 LMDKGTNALDI 228 (368)
Q Consensus 218 ~~~~~~~~~~~ 228 (368)
.........+.
T Consensus 151 ~~~~~g~~~~~ 161 (173)
T cd03115 151 GDARGGAALSI 161 (173)
T ss_pred CCCCcchhhhh
Confidence 98776555443
No 362
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.93 E-value=7.2e-05 Score=64.82 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|..|||||||++++++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999975
No 363
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=7e-05 Score=69.54 Aligned_cols=134 Identities=18% Similarity=0.248 Sum_probs=82.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|.|+..-.+||||..++|+-..-.-...| .+.+-+.+.+.+..+.+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g------------------------------~vddgdtvtdfla~ere 85 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG------------------------------DVDDGDTVTDFLAIERE 85 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhccc------------------------------ccCCCchHHHHHHHHHh
Confidence 456699999999999999999986431000001 11122233333332222
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ | ++-....+ -+.|....+.+|||||..+.... +.+.++--|.++ +|.+++.+...+.
T Consensus 86 r--g----itiqsaav-~fdwkg~rinlidtpghvdf~le-------------verclrvldgav-av~dasagve~qt- 143 (753)
T KOG0464|consen 86 R--G----ITIQSAAV-NFDWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGAV-AVFDASAGVEAQT- 143 (753)
T ss_pred c--C----ceeeeeee-ecccccceEeeecCCCcceEEEE-------------HHHHHHHhcCeE-EEEeccCCcccce-
Confidence 2 2 21111112 24567789999999999886554 445555566555 4555555554443
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+.+.++.+....|.++.+||+|+...
T Consensus 144 ltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 144 LTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eeeehhccccCCchhhhhhhhhhhhh
Confidence 44778888999999999999999843
No 364
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.88 E-value=3.8e-05 Score=73.95 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=46.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..+++||||||..... +.+.+.+..+.. .-.++-++||+.+ .. .++....++.....-..+=+|+||+|
T Consensus 182 ~~DvVIIDTaGr~~~d-----~~l~~eL~~i~~--~~~p~e~lLVvda-~t---gq~~~~~a~~f~~~v~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID-----EELMEELAAIKE--ILNPDEILLVVDA-MT---GQDAVNTAKTFNERLGLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccccC-----HHHHHHHHHHHH--hhCCceEEEEEec-cc---hHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 3579999999985521 224444444322 3356656666654 32 34555555554432234568899999
Q ss_pred ccCCcchHHHhhh
Q 017631 218 LMDKGTNALDILE 230 (368)
Q Consensus 218 ~~~~~~~~~~~~~ 230 (368)
.......+.++..
T Consensus 251 ~~~~~G~~lsi~~ 263 (428)
T TIGR00959 251 GDARGGAALSVRS 263 (428)
T ss_pred CcccccHHHHHHH
Confidence 7766555555543
No 365
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.87 E-value=2.5e-05 Score=72.34 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=28.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG 68 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~ 68 (368)
.--+++|||-||+||||+||+|......|+|..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~ 283 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV 283 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCC
Confidence 446799999999999999999999988777764
No 366
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.87 E-value=9.4e-05 Score=67.14 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
....|.|+|.+|||||||++.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999999999999875
No 367
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.85 E-value=1.9e-05 Score=70.90 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.-+.+.|||-||+|||||+|++-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 55889999999999999999987654
No 368
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=7.6e-05 Score=60.83 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=73.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..--.+++.|--|||||||++.|=..+. ++-..|-.||.-.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPTSE~------------------------------------ 58 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEE------------------------------------ 58 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCChHH------------------------------------
Confidence 3557899999999999999999866553 1223344442111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-cch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-ATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~~~ 193 (368)
+ .-+...++-+|+-|... .+...+.|+..+|+++..|+...... .++
T Consensus 59 --l-----------------~Ig~m~ftt~DLGGH~q-------------Arr~wkdyf~~v~~iv~lvda~d~er~~es 106 (193)
T KOG0077|consen 59 --L-----------------SIGGMTFTTFDLGGHLQ-------------ARRVWKDYFPQVDAIVYLVDAYDQERFAES 106 (193)
T ss_pred --h-----------------eecCceEEEEccccHHH-------------HHHHHHHHHhhhceeEeeeehhhHHHhHHH
Confidence 1 01234678899999844 25667899999998887776654321 111
Q ss_pred H-HHH-HHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 D-AVK-LSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~-~~~-l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
. .++ ++....-...|+++..||+|.....
T Consensus 107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 107 KKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 1 111 1111112368999999999997653
No 369
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00014 Score=66.47 Aligned_cols=151 Identities=14% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCC-ccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDF-LPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~-~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
.++.+++-+|.---||||||-+|+...- .+.++- .+ +.+.. -.........|+.-+.+-++.+
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQl-a~-------l~~dS--------~~~~t~g~~~D~ALLvDGL~AE 67 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQL-AS-------LERDS--------KRKGTQGEKIDLALLVDGLEAE 67 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHH-HH-------Hhccc--------ccccCCCCccchhhhhhhhHHH
Confidence 3678999999999999999999987542 111110 00 00000 0001112345777777777654
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
.++ +++-|+-+.. +......+++.||||.-+- .++|+ .-...+|+.|++|+ +....-.|
T Consensus 68 REQ------GITIDVAYRy-FsT~KRkFIiADTPGHeQY------------TRNMa-TGASTadlAIlLVD-AR~Gvl~Q 126 (431)
T COG2895 68 REQ------GITIDVAYRY-FSTEKRKFIIADTPGHEQY------------TRNMA-TGASTADLAILLVD-ARKGVLEQ 126 (431)
T ss_pred Hhc------CceEEEEeee-cccccceEEEecCCcHHHH------------hhhhh-cccccccEEEEEEe-cchhhHHH
Confidence 433 3333443333 3344568999999998331 12221 22456787776654 45555444
Q ss_pred HHHH--HHHhhCCCCCceEEeeccCcccCCcch
Q 017631 194 DAVK--LSREVDPTGERTFGVLTKLDLMDKGTN 224 (368)
Q Consensus 194 ~~~~--l~~~~~~~~~~~i~VltK~D~~~~~~~ 224 (368)
.... ++..+. -+.+++.+||+|+++-.++
T Consensus 127 TrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 127 TRRHSFIASLLG--IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred hHHHHHHHHHhC--CcEEEEEEeeecccccCHH
Confidence 3322 222221 2456778999999976543
No 370
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00011 Score=70.84 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCC-CceEEeec
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTG-ERTFGVLT 214 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~-~~~i~Vlt 214 (368)
.....+++...|. + + .. .....+-+|.+ |+.++++-++....+. ++..+.++| .|+++|+|
T Consensus 110 gK~RRiTflEcp~--D---------l----~~-miDvaKIaDLV-lLlIdgnfGfEMETmE-FLnil~~HGmPrvlgV~T 171 (1077)
T COG5192 110 GKTRRITFLECPS--D---------L----HQ-MIDVAKIADLV-LLLIDGNFGFEMETME-FLNILISHGMPRVLGVVT 171 (1077)
T ss_pred cceeEEEEEeChH--H---------H----HH-HHhHHHhhhee-EEEeccccCceehHHH-HHHHHhhcCCCceEEEEe
Confidence 3445788888882 2 1 11 12334558844 4556777777666554 555566666 66899999
Q ss_pred cCcccCCcc
Q 017631 215 KLDLMDKGT 223 (368)
Q Consensus 215 K~D~~~~~~ 223 (368)
+.|+.....
T Consensus 172 hlDlfk~~s 180 (1077)
T COG5192 172 HLDLFKNPS 180 (1077)
T ss_pred ecccccChH
Confidence 999986543
No 371
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.0001 Score=71.63 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=51.4
Q ss_pred ecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEee
Q 017631 134 YSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVL 213 (368)
Q Consensus 134 ~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~Vl 213 (368)
+.|...++.||||||..+..-. +.+.++--|..|++++... +. .+....+.++++..+.|.++-+
T Consensus 99 ~~w~~~~iNiIDTPGHvDFT~E-------------VeRALrVlDGaVlvl~aV~-GV-qsQt~tV~rQ~~ry~vP~i~Fi 163 (721)
T KOG0465|consen 99 FTWRDYRINIIDTPGHVDFTFE-------------VERALRVLDGAVLVLDAVA-GV-ESQTETVWRQMKRYNVPRICFI 163 (721)
T ss_pred eeeccceeEEecCCCceeEEEE-------------ehhhhhhccCeEEEEEccc-ce-ehhhHHHHHHHHhcCCCeEEEE
Confidence 3455789999999999986654 3455555565665554422 23 3334457788888899999999
Q ss_pred ccCcccCC
Q 017631 214 TKLDLMDK 221 (368)
Q Consensus 214 tK~D~~~~ 221 (368)
||+|....
T Consensus 164 NKmDRmGa 171 (721)
T KOG0465|consen 164 NKMDRMGA 171 (721)
T ss_pred ehhhhcCC
Confidence 99999854
No 372
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00045 Score=62.93 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=40.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc---CCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE---KPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK 215 (368)
.++++||-||. .++++..+. -.|.++| |++...+...+.+.-++- -.......++|+||
T Consensus 70 lq~tlvDCPGH----------------asLIRtiiggaqiiDlm~l-viDv~kG~QtQtAEcLii-g~~~c~klvvvink 131 (522)
T KOG0461|consen 70 LQFTLVDCPGH----------------ASLIRTIIGGAQIIDLMIL-VIDVQKGKQTQTAECLII-GELLCKKLVVVINK 131 (522)
T ss_pred ceeEEEeCCCc----------------HHHHHHHHhhhheeeeeeE-EEehhcccccccchhhhh-hhhhccceEEEEec
Confidence 47899999998 444555544 4465554 445555555554443221 11124678899999
Q ss_pred CcccCCcc
Q 017631 216 LDLMDKGT 223 (368)
Q Consensus 216 ~D~~~~~~ 223 (368)
+|..+++.
T Consensus 132 id~lpE~q 139 (522)
T KOG0461|consen 132 IDVLPENQ 139 (522)
T ss_pred cccccchh
Confidence 99997643
No 373
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.70 E-value=8.4e-05 Score=65.06 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..++.+||-||+||||++.-|+|..
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~ 83 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF 83 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC
Confidence 3579999999999999999999975
No 374
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00033 Score=55.72 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=49.8
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc---hHHHHHHHhhCCCCCceEEee
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT---SDAVKLSREVDPTGERTFGVL 213 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~---~~~~~l~~~~~~~~~~~i~Vl 213 (368)
....+.++|+-|-.+- +-..+.|..+.|++|.||++++.+-.. .+...++++-...+...+++.
T Consensus 60 KNLk~~vwdLggqtSi-------------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSI-------------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCcccc-------------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 3457889999997652 456799999999999998887764322 222223333334457788889
Q ss_pred ccCcccCC
Q 017631 214 TKLDLMDK 221 (368)
Q Consensus 214 tK~D~~~~ 221 (368)
||.|....
T Consensus 127 nKqD~~~~ 134 (182)
T KOG0072|consen 127 NKQDYSGA 134 (182)
T ss_pred ccccchhh
Confidence 99999754
No 375
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=9.7e-05 Score=73.50 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.+..|.+|.+-..|||||...|+..+ |. ..|.+-.+++-.+.+. +++
T Consensus 8 ~irn~~~vahvdhgktsladsl~asn------gvis~rlagkirfld~red--------------------------eq~ 55 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASN------GVISSRLAGKIRFLDTRED--------------------------EQT 55 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhc------cEechhhccceeeccccch--------------------------hhh
Confidence 46679999999999999999998765 32 2333333333211110 001
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
..++-+..++| .-.....++|||+||..+..+. +.+...-+|..+ +.+++..+...+.
T Consensus 56 rgitmkss~is--------~~~~~~~~nlidspghvdf~se-------------vssas~l~d~al-vlvdvvegv~~qt 113 (887)
T KOG0467|consen 56 RGITMKSSAIS--------LLHKDYLINLIDSPGHVDFSSE-------------VSSASRLSDGAL-VLVDVVEGVCSQT 113 (887)
T ss_pred hceeeeccccc--------cccCceEEEEecCCCccchhhh-------------hhhhhhhcCCcE-EEEeeccccchhH
Confidence 11111112222 1113346889999999885433 444555677444 4456666666655
Q ss_pred HHHHHHhhCCCCCceEEeeccCccc
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.. ++++.-..+.+.++|+||+|.+
T Consensus 114 ~~-vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 114 YA-VLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred HH-HHHHHHHccCceEEEEehhhhH
Confidence 44 6775555678899999999943
No 376
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.64 E-value=0.00052 Score=59.99 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeeCCC-cccc-hHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 162 VLEIETMVRSYIEKPNCLILAITPANQ-DLAT-SDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~~-~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.++-..+++..+.+|. +||+-.|+.. |..+ .....++..+......+++++|+=..+
T Consensus 147 qqQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 147 QQQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred HHHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 3555788899999999 6667666543 3323 344556677765556789999875444
No 377
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.62 E-value=0.0005 Score=63.94 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.+|..+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 378
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.60 E-value=8.9e-05 Score=63.12 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=67.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
-.++|||+-.+|||+|+-..+-..| |... .||+..-
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~f-p~~y-----vPTVFdn-------------------------------------- 40 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAF-PEEY-----VPTVFDN-------------------------------------- 40 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcC-cccc-----cCeEEcc--------------------------------------
Confidence 4689999999999999999877653 5543 4443310
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-ccc--chH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DLA--TSD 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~--~~~ 194 (368)
-...+.+.......+.|+||.|.-+-.. ++-+ ....+|.+++|..-.+. .+. ...
T Consensus 41 ---------ys~~v~V~dg~~v~L~LwDTAGqedYDr----------lRpl---sY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 41 ---------YSANVTVDDGKPVELGLWDTAGQEDYDR----------LRPL---SYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred ---------ceEEEEecCCCEEEEeeeecCCCccccc----------cccc---CCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 0011122112234689999999855211 1211 45678977665432221 111 122
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
|..-++...| +.|+|+|.||.|+.+.
T Consensus 99 W~pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 99 WIPEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred hhHHHHhhCC-CCCEEEEeehHHhhhC
Confidence 3333333333 6999999999999944
No 379
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.57 E-value=1.7e-05 Score=61.92 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=49.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chHHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+.+|||.|.- .+++.+-.|.+.+|+++|+.+-++.. +. .+.|+.-+.++......++++.||+
T Consensus 47 vklqiwdtagqe-------------rfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAGQE-------------RFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccchH-------------HHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 468899999973 45778899999999888877655542 22 2344444455555567788999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 114 d~a~ 117 (192)
T KOG0083|consen 114 DLAH 117 (192)
T ss_pred ccch
Confidence 9974
No 380
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.53 E-value=0.00025 Score=60.30 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
|.++|.|--||||||||+.|+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999999994
No 381
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.003 Score=59.80 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=50.4
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..++.||||.|-... .+.+.+++..+ .. .-+||-+++|+++.. -|++...++..+..-.=+=+|+||+|
T Consensus 182 ~~DvvIvDTAGRl~i-----de~Lm~El~~I-k~-~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 182 GYDVVIVDTAGRLHI-----DEELMDELKEI-KE-VINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKLD 250 (451)
T ss_pred CCCEEEEeCCCcccc-----cHHHHHHHHHH-Hh-hcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEccc
Confidence 358999999997652 33455555443 22 345665777776543 35566666666654445568999999
Q ss_pred ccCCcchHHHh
Q 017631 218 LMDKGTNALDI 228 (368)
Q Consensus 218 ~~~~~~~~~~~ 228 (368)
--..+.-+..+
T Consensus 251 GdaRGGaALS~ 261 (451)
T COG0541 251 GDARGGAALSA 261 (451)
T ss_pred CCCcchHHHhh
Confidence 98766544443
No 382
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.48 E-value=0.0023 Score=58.75 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.-|+++|||+.++|||||...|+...
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nya 127 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYA 127 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHH
Confidence 47999999999999999999998654
No 383
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.48 E-value=0.00017 Score=66.72 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
.--.|++||.||+||||+||+|-..++
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhccc
Confidence 345699999999999999999988876
No 384
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.29 E-value=0.0007 Score=62.35 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.+|+|||+..+|||||+--|+...
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecc
Confidence 469999999999999999988765
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.00063 Score=64.39 Aligned_cols=24 Identities=29% Similarity=0.709 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
.++++|.+|+|||||+|+|+|...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 699999999999999999999763
No 386
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0027 Score=55.87 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=22.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.|+++|+.|+|||||+|.+.|..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 349999999999999999999986
No 387
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.25 E-value=0.00048 Score=63.67 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=39.9
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh-cCCCeEEEEEeeCCCcccc--hHHHHHHHhhCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI-EKPNCLILAITPANQDLAT--SDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~iil~v~~~~~~~~~--~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
-+.||||-|.-. .++..++-.+ ...|..+|+| .++..... .+.+.++ -..+-|+|+|+||+
T Consensus 202 lVsfVDtvGHEp------------wLrTtirGL~gqk~dYglLvV-aAddG~~~~tkEHLgi~---~a~~lPviVvvTK~ 265 (527)
T COG5258 202 LVSFVDTVGHEP------------WLRTTIRGLLGQKVDYGLLVV-AADDGVTKMTKEHLGIA---LAMELPVIVVVTKI 265 (527)
T ss_pred EEEEEecCCccH------------HHHHHHHHHhccccceEEEEE-EccCCcchhhhHhhhhh---hhhcCCEEEEEEec
Confidence 467999999732 1122233333 4788666554 55543322 2333233 23468999999999
Q ss_pred cccCCc
Q 017631 217 DLMDKG 222 (368)
Q Consensus 217 D~~~~~ 222 (368)
|+.+.+
T Consensus 266 D~~~dd 271 (527)
T COG5258 266 DMVPDD 271 (527)
T ss_pred ccCcHH
Confidence 999764
No 388
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.15 E-value=0.005 Score=57.89 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.+|..+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999863
No 389
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.0099 Score=54.58 Aligned_cols=82 Identities=27% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHH---Hhhc-CCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVR---SYIE-KPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~Vlt 214 (368)
.++.||||.|-...... +++++..+.+ .... .++-+++++++....-..+.+..+-.... =+=+|+|
T Consensus 222 ~DvvliDTAGRLhnk~n-----LM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~----l~GiIlT 292 (340)
T COG0552 222 IDVVLIDTAGRLHNKKN-----LMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG----LDGIILT 292 (340)
T ss_pred CCEEEEeCcccccCchh-----HHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC----CceEEEE
Confidence 58999999998764433 6666655432 2222 33435544444322111122222222222 3348999
Q ss_pred cCcccCCcchHHHhh
Q 017631 215 KLDLMDKGTNALDIL 229 (368)
Q Consensus 215 K~D~~~~~~~~~~~~ 229 (368)
|+|-...+..+..+.
T Consensus 293 KlDgtAKGG~il~I~ 307 (340)
T COG0552 293 KLDGTAKGGIILSIA 307 (340)
T ss_pred ecccCCCcceeeeHH
Confidence 999777666544443
No 390
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.06 E-value=0.0021 Score=64.35 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCC-CCceEEeecc
Q 017631 163 LEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPT-GERTFGVLTK 215 (368)
Q Consensus 163 ~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~-~~~~i~VltK 215 (368)
++--.+++..+++++.+ +.+.+...........+.+.+... ..+|++++++
T Consensus 476 rQRiaiARall~~~~il--iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 476 RQRLALARALLADAPIL--LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 44568899999999943 345555444444444444444432 4678888876
No 391
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.01 E-value=0.00018 Score=65.83 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|++|+||||++..|...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 392
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.01 E-value=0.0013 Score=54.51 Aligned_cols=55 Identities=29% Similarity=0.359 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 165 IETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 165 ~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+..+.+.+++++|.++++++ +........ ..+...+...+.|+++|+||+|+.+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D-~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLD-ARDPELTRS-RKLERYVLELGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHHhhCCEEEEEee-CCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCCH
Confidence 35677888889997766554 443322222 22444444457899999999999743
No 393
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0051 Score=60.29 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCc
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSG 68 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~ 68 (368)
.+++||..|+|||||+|.|+|.- |...|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~--~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFL--APTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--CCCCc
Confidence 49999999999999999999953 44444
No 394
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.99 E-value=0.0013 Score=56.11 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
+.|+|+-||||||.-+++...
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred EEEEccCCCCcchHHHHHHHH
Confidence 578999999999999999754
No 395
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.95 E-value=0.012 Score=48.12 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||+++|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999974
No 396
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.91 E-value=0.0008 Score=56.23 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=24.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGS 67 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~ 67 (368)
-.++|+|+.|||||||+|-+.|... |.+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 3599999999999999999999874 6543
No 397
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.88 E-value=0.0011 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
..+|.|+.+|||||++.|+.-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998643
No 398
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.87 E-value=0.01 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|||||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 469999999999999999999974
No 399
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.015 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
+.-.|.|+|.||+|||||++.|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 45679999999999999999999864
No 400
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.78 E-value=0.006 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
+|..++-|-=|||||||||.|+...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4888999999999999999999765
No 401
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.77 E-value=0.0051 Score=53.43 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHhhC
Q 017631 40 VAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g 59 (368)
-+|+|+|||||||..+.+..
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47899999999999887654
No 402
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.75 E-value=0.026 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..+.++|||+.+||||||...|++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5799999999999999998888754
No 403
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.021 Score=46.92 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCeEEEEEeeC-CCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 164 EIETMVRSYIEKPNCLILAITPA-NQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 164 ~~~~~~~~~~~~~d~iil~v~~~-~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.....+++.++.+|++| ++.. ...+........++++-..++|.|.++-+-+.
T Consensus 89 i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 89 IAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 44455667778899554 3321 12344455555677777788998888876654
No 404
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0067 Score=56.43 Aligned_cols=80 Identities=28% Similarity=0.347 Sum_probs=44.6
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
...+++|+||.|-.. +..++-+++... .+.+ .+|.+|+|+++ +-. +.+...++..+..-.-.-+++||.
T Consensus 182 e~fdvIIvDTSGRh~-----qe~sLfeEM~~v-~~ai-~Pd~vi~VmDa-siG---Qaae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK-----QEASLFEEMKQV-SKAI-KPDEIIFVMDA-SIG---QAAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred cCCcEEEEeCCCchh-----hhHHHHHHHHHH-Hhhc-CCCeEEEEEec-ccc---HhHHHHHHHHHHhhccceEEEEec
Confidence 345899999999754 334444444332 2333 57767765544 332 222223333333333456899999
Q ss_pred cccCCcchHHH
Q 017631 217 DLMDKGTNALD 227 (368)
Q Consensus 217 D~~~~~~~~~~ 227 (368)
|--..+.-...
T Consensus 251 DGhakGGgAlS 261 (483)
T KOG0780|consen 251 DGHAKGGGALS 261 (483)
T ss_pred ccCCCCCceee
Confidence 98866554333
No 405
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.73 E-value=0.0077 Score=61.22 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
+++||+.|+|||||++.|+|.-
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999999974
No 406
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.68 E-value=0.008 Score=62.51 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 162 VLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.++.-.+++..+++++.++ .+.+...+.......+.+.+.. ..++++++|+-
T Consensus 620 QrQRiaLARall~~p~ili--LDEptS~LD~~te~~i~~~l~~-~~~T~IiitHr 671 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILI--LDEATSALDPETEKIIDDNLRR-RGCTCIIVAHR 671 (710)
T ss_pred HHHHHHHHHHHhhCCCEEE--EECccccCCHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 3455688999999999433 3554444444444445555554 36788887765
No 407
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0067 Score=55.01 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCCeEEEEE--eeCCCcccchHHHHHHHhhCCCCCceEEeecc
Q 017631 162 VLEIETMVRSYIEKPNCLILAI--TPANQDLATSDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v--~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK 215 (368)
.++...+++....+|+ ++||= +++-.+-.++..+.+++.++....=||+.+|+
T Consensus 146 QKQRVaIARALa~~P~-iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 146 QKQRVAIARALANNPK-ILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred hhhHHHHHHHHhcCCC-EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 3455788899999999 66662 23334555667778888888777778888886
No 408
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.57 E-value=0.0016 Score=52.46 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++|+|+.|+|||||+++|+|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 358999999999999999999975
No 409
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0093 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=22.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.+++||+.|+|||||..+|+|..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 459999999999999999999986
No 410
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.54 E-value=0.011 Score=61.15 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 162 VLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.++--.+++..+++++.+ +.+.+...+.......+.+.+... .+|++++|+-
T Consensus 593 QrQRialARAll~~p~iL--iLDEpTS~LD~~te~~i~~~L~~~-~~T~IiItHr 644 (686)
T TIGR03797 593 QRQRLLIARALVRKPRIL--LFDEATSALDNRTQAIVSESLERL-KVTRIVIAHR 644 (686)
T ss_pred HHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHHHHHHHHh-CCeEEEEecC
Confidence 345568899999999943 345544444444444455555544 3688888874
No 411
>PRK13695 putative NTPase; Provisional
Probab=96.53 E-value=0.011 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+++|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 412
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0099 Score=54.40 Aligned_cols=130 Identities=21% Similarity=0.331 Sum_probs=76.3
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhhC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTG 119 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 119 (368)
|.-+|.-..|||||-.||+..-- ... +.....|+++..+.++
T Consensus 57 VGTIGHVDHGKTTLTaAITkila--~~g-----------------------------~A~~~kydeID~APEE------- 98 (449)
T KOG0460|consen 57 VGTIGHVDHGKTTLTAAITKILA--EKG-----------------------------GAKFKKYDEIDKAPEE------- 98 (449)
T ss_pred ccccccccCCchhHHHHHHHHHH--hcc-----------------------------ccccccHhhhhcChhh-------
Confidence 88899999999999999986421 100 1122333333333221
Q ss_pred CCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc-chHHHHH
Q 017631 120 KSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA-TSDAVKL 198 (368)
Q Consensus 120 ~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~-~~~~~~l 198 (368)
+.++++-+...++..... .++.=+|-||..+ .+.+|+-- ...-|..||||........ +.+.+-+
T Consensus 99 kaRGITIn~aHveYeTa~-RhYaH~DCPGHAD------------YIKNMItG-aaqMDGaILVVaatDG~MPQTrEHlLL 164 (449)
T KOG0460|consen 99 KARGITINAAHVEYETAK-RHYAHTDCPGHAD------------YIKNMITG-AAQMDGAILVVAATDGPMPQTREHLLL 164 (449)
T ss_pred hhccceEeeeeeeeeccc-cccccCCCCchHH------------HHHHhhcC-ccccCceEEEEEcCCCCCcchHHHHHH
Confidence 234566666666665544 4677899999843 23444322 2345667777655433221 1234446
Q ss_pred HHhhCCCCCceEEeeccCcccCCcc
Q 017631 199 SREVDPTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 199 ~~~~~~~~~~~i~VltK~D~~~~~~ 223 (368)
++++.- ..+++.+||.|.+++.+
T Consensus 165 ArQVGV--~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 165 ARQVGV--KHIVVFINKVDLVDDPE 187 (449)
T ss_pred HHHcCC--ceEEEEEecccccCCHH
Confidence 666643 66777899999996543
No 413
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.51 E-value=0.0036 Score=60.47 Aligned_cols=27 Identities=48% Similarity=0.770 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
+--.|+|+|.||+|||||+|-|.|..|
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccCh
Confidence 346799999999999999999999887
No 414
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.48 E-value=0.0028 Score=51.36 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 415
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.44 E-value=0.013 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|..
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999999964
No 416
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.41 E-value=0.014 Score=60.72 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
+++||+.|+|||||++.|+|.-
T Consensus 510 vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 510 VALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8999999999999999999964
No 417
>PRK01889 GTPase RsgA; Reviewed
Probab=96.41 E-value=0.0046 Score=58.54 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=34.1
Q ss_pred hcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 173 IEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 173 ~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+.+.|.++ +|.++..++......+++..+...+.+.++|+||+|++++
T Consensus 110 aANvD~vl-iV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVDTVF-IVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EEeCCEEE-EEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 46889654 5556666666655556665665667788999999999865
No 418
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.41 E-value=0.016 Score=49.74 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 165 IETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 165 ~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+..++..|++++|.++++++...... . ....+.. ...+.|+++|+||+|+.++.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-~-~~~~l~~--~~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-S-LIPRLRL--FGGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-c-cchhHHH--hcCCCcEEEEEEchhcCCCC
Confidence 57788999999997776665433221 1 1111211 12468999999999998543
No 419
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.40 E-value=0.0024 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
|.|.|||..|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999764
No 420
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.40 E-value=0.051 Score=47.01 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~ 58 (368)
.++++|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999988
No 421
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.38 E-value=0.014 Score=60.80 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.|+++|+.|||||||++.|+|.-
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 39999999999999999999964
No 422
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.36 E-value=0.045 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
=-+|++||.-|+|||||++.|+|..
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3579999999999999999999986
No 423
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.34 E-value=0.016 Score=60.05 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.|++||+.|+|||||++.|+|.-
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999999964
No 424
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.33 E-value=0.0026 Score=56.96 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 166 ETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 166 ~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+.+.|+.++|.+++|+...+.........+++..+...+.+.++|+||+|+.+.
T Consensus 27 ~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 27 NELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD 82 (245)
T ss_pred ceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC
Confidence 56677799999977766543333323333333444444457899999999999754
No 425
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.32 E-value=0.044 Score=40.63 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
+++.|..|+||||+...|...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998753
No 426
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.31 E-value=0.0088 Score=40.00 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCC--cccchHHHHHHHhhCCC--CCceEEeeccCc
Q 017631 166 ETMVRSYIEKPNCLILAITPANQ--DLATSDAVKLSREVDPT--GERTFGVLTKLD 217 (368)
Q Consensus 166 ~~~~~~~~~~~d~iil~v~~~~~--~~~~~~~~~l~~~~~~~--~~~~i~VltK~D 217 (368)
+..+...+.+-...|+++.+.+. +.+-.+-..+.+.+.+. ++|++.|+||+|
T Consensus 3 E~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 3 EMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 44555666666556667666554 33334444566666654 699999999998
No 427
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.31 E-value=0.0033 Score=53.61 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh---CCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIV---GRD 61 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~---g~~ 61 (368)
..|.|+|+|.+||||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 56899999999999999999998 654
No 428
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.28 E-value=0.018 Score=58.31 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|.-
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999999964
No 429
>PLN03232 ABC transporter C family member; Provisional
Probab=96.27 E-value=0.028 Score=63.21 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|+|+.|||||||+++|+|.-
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 39999999999999999999964
No 430
>PLN03232 ABC transporter C family member; Provisional
Probab=96.25 E-value=0.017 Score=64.77 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.|+|||++|||||||++.|+|.-
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999963
No 431
>PRK12289 GTPase RsgA; Reviewed
Probab=96.25 E-value=0.0047 Score=58.19 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 166 ETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 166 ~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+.+.++.++|.+++|+...+.++......+++..+...+.+.++|+||+|++++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP 135 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh
Confidence 44566778999976655543333333323334444444567999999999999854
No 432
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.25 E-value=0.02 Score=58.21 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++|+|+.|+|||||++.|+|.-
T Consensus 364 v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 364 VAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCc
Confidence 8999999999999999999974
No 433
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.24 E-value=0.0025 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.803 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999865
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.23 E-value=0.0034 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.++|+|++|||||||+++|+|.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999986
No 435
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.22 E-value=0.0075 Score=50.00 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=31.0
Q ss_pred HHhhcCCCeEEEEEeeCCCccc--chHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 170 RSYIEKPNCLILAITPANQDLA--TSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 170 ~~~~~~~d~iil~v~~~~~~~~--~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.+.+.++|.++++ .++..+.. .....+.+... ..+.|.++|+||+|+.++.
T Consensus 3 ~~~l~~aD~il~V-vD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 3 YKVIDSSDVVIQV-LDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hHhhhhCCEEEEE-EECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 4567899966555 45544332 22333333332 2358999999999998653
No 436
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.20 E-value=0.033 Score=56.35 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.+++||+.||||||+++.|.+.-
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 349999999999999999999963
No 437
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.20 E-value=0.017 Score=58.50 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++|+|+.|+|||||++.|+|.-
T Consensus 369 i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 369 VALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8999999999999999999964
No 438
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.17 E-value=0.03 Score=56.38 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|.-
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999974
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.13 E-value=0.0057 Score=51.85 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|++|||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 440
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.0041 Score=52.31 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCccccccc
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRP 74 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p 74 (368)
-+++.|+.|+|||||+.+|+...-+-.+-..+||.|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 489999999999999999997653333444566655
No 441
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.13 E-value=0.037 Score=44.86 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhC--CCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVD--PTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~--~~~~~~i~VltK~ 216 (368)
.++++||+|+... ......+..+|.+++++.+.... ......+++.+. ....++.+|+|++
T Consensus 45 yd~VIiD~p~~~~---------------~~~~~~l~~aD~vviv~~~~~~s--~~~~~~~l~~l~~~~~~~~~~lVvN~~ 107 (139)
T cd02038 45 YDYIIIDTGAGIS---------------DNVLDFFLAADEVIVVTTPEPTS--ITDAYALIKKLAKQLRVLNFRVVVNRA 107 (139)
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHhCCeEEEEcCCChhH--HHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5899999998543 11345678899776665443222 222233333332 1246788999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
+...+
T Consensus 108 ~~~~~ 112 (139)
T cd02038 108 ESPKE 112 (139)
T ss_pred CCHHH
Confidence 75533
No 442
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.12 E-value=0.099 Score=43.79 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=39.6
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHh-hcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceE-Eeecc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSY-IEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTF-GVLTK 215 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i-~VltK 215 (368)
..++++||||+... ....... +..+|.+++++.+.. .......++.+.+...+.+.+ +|+|+
T Consensus 67 ~yD~VIiD~pp~~~--------------~~~~~~~~~~~ad~viiV~~p~~--~s~~~~~~~~~~l~~~~~~~~gvv~N~ 130 (169)
T cd02037 67 ELDYLVIDMPPGTG--------------DEHLTLAQSLPIDGAVIVTTPQE--VALDDVRKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred CCCEEEEeCCCCCc--------------HHHHHHHhccCCCeEEEEECCch--hhHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 45899999998643 1111111 257787776665533 334455556666665566654 66899
Q ss_pred Cccc
Q 017631 216 LDLM 219 (368)
Q Consensus 216 ~D~~ 219 (368)
.+..
T Consensus 131 ~~~~ 134 (169)
T cd02037 131 SYFV 134 (169)
T ss_pred Cccc
Confidence 8754
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.11 E-value=0.0053 Score=43.25 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 444
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.11 E-value=0.0044 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 445
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.10 E-value=0.018 Score=48.80 Aligned_cols=67 Identities=22% Similarity=0.188 Sum_probs=43.9
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
...++++|||||... ..+...+..+|.+++++.+... ......++++.+...+.+..+|+||+
T Consensus 91 ~~~d~viiDtpp~~~---------------~~~~~~l~~aD~vliv~~~~~~--~~~~~~~~~~~l~~~~~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIG---------------CPVIASLTGADAALLVTEPTPS--GLHDLERAVELVRHFGIPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCc---------------HHHHHHHHcCCEEEEEecCCcc--cHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456899999997643 1234556789977766655432 23344445555555567788999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|...
T Consensus 154 ~~~~ 157 (179)
T cd03110 154 DLND 157 (179)
T ss_pred CCCc
Confidence 9764
No 446
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.09 E-value=0.0046 Score=53.21 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.|.|+|..|||||||+|+|+|.-
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCcc
Confidence 349999999999999999999974
No 447
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.09 E-value=0.053 Score=45.59 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=38.5
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCC-CCceEEeeccCcc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPT-GERTFGVLTKLDL 218 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~-~~~~i~VltK~D~ 218 (368)
++++||+||-... .+...+..+|.+|+++.+... ......++++.+... .....+|+|++|.
T Consensus 64 d~viiD~p~~~~~---------------~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER---------------GFITAIAPADEALLVTTPEIS--SLRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH---------------HHHHHHHhCCcEEEEeCCCcc--hHHHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 8999999986431 134456788977766655332 223333344444332 2456788999987
Q ss_pred cCC
Q 017631 219 MDK 221 (368)
Q Consensus 219 ~~~ 221 (368)
...
T Consensus 127 ~~~ 129 (179)
T cd02036 127 DMV 129 (179)
T ss_pred ccc
Confidence 643
No 448
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.08 E-value=0.00054 Score=57.00 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=24.9
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 34 WEALPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 34 ~~~lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
+..|-.+.|+|+-++||+|++...+...|
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nf 50 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNF 50 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHH
Confidence 44677899999999999999999887765
No 449
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.05 E-value=0.027 Score=57.06 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
|+++|+.|+|||||++.|+|.-
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8999999999999999999974
No 450
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.04 E-value=0.0057 Score=63.33 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=19.8
Q ss_pred ECCCCCCHHHHHHHhhCCCCccc
Q 017631 43 VGGQSSGKSSVLESIVGRDFLPR 65 (368)
Q Consensus 43 vG~~saGKSSllnaL~g~~~~p~ 65 (368)
+|.||+|||||||.|.|..| ++
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~ 22 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DV 22 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cc
Confidence 59999999999999999986 44
No 451
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.03 E-value=0.0053 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999974
No 452
>PLN03130 ABC transporter C family member; Provisional
Probab=96.02 E-value=0.029 Score=63.38 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|||++|||||||++.|++.
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl 1288 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRI 1288 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4999999999999999999996
No 453
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.02 E-value=0.037 Score=62.36 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|||++|||||||+++|++.
T Consensus 1314 kiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1314 KVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999996
No 454
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.02 E-value=0.0053 Score=53.57 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 455
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.0054 Score=57.01 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.||||||||+.|.|..
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999999986
No 456
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.99 E-value=0.029 Score=56.93 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++++|+.|+|||||++.|+|.-
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8999999999999999999964
No 457
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.0061 Score=50.63 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
=-.++|||+.|||||||+++|++.-
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhccc
Confidence 3458999999999999999999973
No 458
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0085 Score=57.46 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=42.7
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
-+.|||.||..+.++. +...++-.|..+ +|+++-.+...+..- ++++.-..+..-++|+||+|..
T Consensus 99 LiNLIDSPGHVDFSSE-------------VTAALRVTDGAL-VVVDcv~GvCVQTET-VLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSE-------------VTAALRVTDGAL-VVVDCVSGVCVQTET-VLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred eEEeccCCCcccchhh-------------hhheeEeccCcE-EEEEccCceEechHH-HHHHHHHhhccceEEeehhhHH
Confidence 5789999999886543 455677777554 555665555555443 4444433445557899999985
No 459
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.006 Score=54.23 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999964
No 460
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.96 E-value=0.0058 Score=53.62 Aligned_cols=23 Identities=48% Similarity=0.642 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||+++|+|.-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999974
No 461
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.95 E-value=0.0057 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|||||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999999964
No 462
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.94 E-value=0.03 Score=56.97 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++++|..|+|||||++.|+|.-
T Consensus 370 iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 370 VALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 8999999999999999999964
No 463
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.0059 Score=53.31 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999963
No 464
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0062 Score=53.55 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999963
No 465
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.93 E-value=0.033 Score=56.40 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++++|+.|+|||||++.|+|.-
T Consensus 344 ~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 9999999999999999999964
No 466
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.91 E-value=0.036 Score=48.66 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=40.7
Q ss_pred CeEEEeCCCC-cccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC--CcccchHHHHHHHhhCCCCCceEEeecc
Q 017631 140 NLTLIDLPGI-TKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN--QDLATSDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 140 ~l~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~--~~~~~~~~~~l~~~~~~~~~~~i~VltK 215 (368)
.+.+|-+||. .+.-+.+-+- -...-..+++...-+++ ++++=.|.. .+........+++.+...-.-|++++|+
T Consensus 128 KL~~VGL~~~~~~~~PsELSG-GM~KRvaLARAialdPe-ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH 204 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSG-GMRKRVALARAIALDPE-LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204 (263)
T ss_pred HHHhcCCChhhhhhCchhhcc-hHHHHHHHHHHHhcCCC-EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC
Confidence 4556777776 2211111111 23444677888888998 444433322 2444445555777776655667777775
No 467
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.90 E-value=0.04 Score=57.24 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|.-
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 468
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.90 E-value=0.0064 Score=51.50 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.++|+|+.|+|||||++++++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999864
No 469
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.90 E-value=0.0065 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 470
>PTZ00243 ABC transporter; Provisional
Probab=95.89 E-value=0.036 Score=62.43 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
|+|||++|||||||++.|+|.-
T Consensus 1339 VaIVGrTGSGKSTLl~lLlrl~ 1360 (1560)
T PTZ00243 1339 VGIVGRTGSGKSTLLLTFMRMV 1360 (1560)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999963
No 471
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.89 E-value=0.037 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++++|+.|+|||||++.|+|.-
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred EEEECCCCCCHHHHHHHHccCC
Confidence 8999999999999999999964
No 472
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.89 E-value=0.007 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 473
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0064 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999964
No 474
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.88 E-value=0.0071 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 475
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.88 E-value=0.0075 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999974
No 476
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.88 E-value=0.0066 Score=57.01 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+|+|.+|||||||+++|++.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc
Confidence 56999999999999999999985
No 477
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.88 E-value=0.0068 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999999964
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.88 E-value=0.0064 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.|+++|+.|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999998864
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.0077 Score=51.11 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||+++|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999963
No 480
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.85 E-value=0.007 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999974
No 481
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.85 E-value=0.0061 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
|+++|.+||||||+...|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 482
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.85 E-value=0.0066 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|.+|||||||+++|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 483
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.84 E-value=0.0071 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999974
No 484
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0072 Score=53.15 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 485
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.83 E-value=0.0075 Score=50.74 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|.++|+|..|||||||+++|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4678999999999999999999875
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.83 E-value=0.0082 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.|+|+|.+|||||||++.|.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999985
No 487
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.82 E-value=0.02 Score=49.69 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHH-HHHHhhcCCCeEEEEEeeCCCcccch-----HHHHHHHhhCCCCCceEEe
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIET-MVRSYIEKPNCLILAITPANQDLATS-----DAVKLSREVDPTGERTFGV 212 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iil~v~~~~~~~~~~-----~~~~l~~~~~~~~~~~i~V 212 (368)
.-+.++|--|.-. ..+..-. .=....++.++++.+.+....++..+ ..++.+.+..| ..++++.
T Consensus 53 l~LnlwDcGgqe~---------fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l 122 (295)
T KOG3886|consen 53 LVLNLWDCGGQEE---------FMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCL 122 (295)
T ss_pred heeehhccCCcHH---------HHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEE
Confidence 4577899888621 1111111 11223557786765554444333221 22233333344 4678999
Q ss_pred eccCcccCCcc
Q 017631 213 LTKLDLMDKGT 223 (368)
Q Consensus 213 ltK~D~~~~~~ 223 (368)
++|.|++..+.
T Consensus 123 ~hKmDLv~~d~ 133 (295)
T KOG3886|consen 123 LHKMDLVQEDA 133 (295)
T ss_pred Eeechhcccch
Confidence 99999996644
No 488
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.82 E-value=0.0063 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-|+|+|++||||||++++|++.-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998853
No 489
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.82 E-value=0.012 Score=47.76 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=33.0
Q ss_pred HHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCC--CCCceEEeeccCcccCC
Q 017631 168 MVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDP--TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 168 ~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~--~~~~~i~VltK~D~~~~ 221 (368)
.+.+.+.++|.++++ .++..+....+ ..+.+.+.. .++|.++|+||+|+.++
T Consensus 4 ~~~~~i~~aD~vl~V-iD~~~p~~~~~-~~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSDIVVQI-VDARNPLLFRP-PDLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCCEEEEE-EEccCCcccCC-HHHHHHHHhccCCCcEEEEEechhcCCH
Confidence 467788999966655 45554443331 123333332 37899999999999754
No 490
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.82 E-value=0.0071 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999999974
No 491
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.81 E-value=0.0069 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||+++|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999964
No 492
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.81 E-value=0.0078 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999974
No 493
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.0076 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999964
No 494
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.81 E-value=0.0079 Score=54.39 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=24.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC-CCccccC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR-DFLPRGS 67 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~-~~~p~~~ 67 (368)
.+-.|.|+|.+.+|||.|+|.|+|. ..|+.+.
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~ 52 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGP 52 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSS
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccC
Confidence 4556999999999999999999974 2334444
No 495
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.80 E-value=0.008 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999963
No 496
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.79 E-value=0.0083 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|+|||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 497
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.79 E-value=0.0024 Score=55.87 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||+|.|+|.-
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~ 54 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFY 54 (250)
T ss_pred EEEEECCCCCCceeeeeeecccc
Confidence 48999999999999999999963
No 498
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.78 E-value=0.0077 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999999974
No 499
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=95.78 E-value=0.037 Score=62.20 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
|+|||++|||||||+++|+|.-
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhc
Confidence 8999999999999999999973
No 500
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.78 E-value=0.063 Score=48.99 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=29.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEE
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQ 78 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~ 78 (368)
..|.+++||++|.|||++++.+...- -|...+-...+|+...
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~v 101 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYV 101 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEE
Confidence 56899999999999999999998643 1322233345665544
Done!