Query 017631
Match_columns 368
No_of_seqs 225 out of 2850
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t34_A Dynamin-related protein 100.0 1.3E-49 4.5E-54 376.2 30.7 332 4-335 1-332 (360)
2 3zvr_A Dynamin-1; hydrolase, D 100.0 2.6E-47 9E-52 383.5 38.6 347 2-359 24-370 (772)
3 2x2e_A Dynamin-1; nitration, h 100.0 2.7E-44 9.2E-49 338.8 36.6 339 2-351 4-344 (353)
4 3szr_A Interferon-induced GTP- 100.0 2.1E-40 7.3E-45 331.7 33.3 323 35-358 43-370 (608)
5 1jwy_B Dynamin A GTPase domain 100.0 1.7E-38 5.9E-43 294.8 29.9 310 5-323 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 2E-36 7E-41 278.6 35.5 298 4-312 1-298 (299)
7 2j69_A Bacterial dynamin-like 99.8 7.7E-20 2.6E-24 185.5 19.8 172 36-221 68-245 (695)
8 3iev_A GTP-binding protein ERA 99.8 3.4E-20 1.2E-24 170.8 11.4 212 36-308 9-223 (308)
9 1wf3_A GTP-binding protein; GT 99.8 1.5E-19 5.1E-24 165.8 10.6 204 36-309 6-216 (301)
10 1ega_A Protein (GTP-binding pr 99.7 2.3E-18 7.9E-23 158.0 3.9 201 37-306 8-214 (301)
11 4dhe_A Probable GTP-binding pr 99.6 4E-16 1.4E-20 136.5 10.4 128 36-222 28-160 (223)
12 3iby_A Ferrous iron transport 99.6 1.5E-16 5E-21 142.5 7.4 122 37-221 1-125 (256)
13 2xtp_A GTPase IMAP family memb 99.6 3.2E-16 1.1E-20 140.8 8.1 126 36-220 21-153 (260)
14 3pqc_A Probable GTP-binding pr 99.6 2.3E-15 8E-20 128.3 12.1 125 36-222 22-149 (195)
15 2qu8_A Putative nucleolar GTP- 99.6 3.6E-15 1.2E-19 131.1 12.1 134 29-221 21-157 (228)
16 3t5d_A Septin-7; GTP-binding p 99.6 3.3E-15 1.1E-19 135.2 11.8 137 38-222 9-160 (274)
17 3tkl_A RAS-related protein RAB 99.6 4.2E-15 1.4E-19 127.0 11.6 158 36-260 15-175 (196)
18 2qtf_A Protein HFLX, GTP-bindi 99.6 1.1E-14 3.6E-19 136.7 14.5 129 34-222 176-308 (364)
19 2dyk_A GTP-binding protein; GT 99.6 3.6E-15 1.2E-19 123.1 10.0 123 37-222 1-124 (161)
20 2qpt_A EH domain-containing pr 99.6 6.1E-15 2.1E-19 145.6 13.2 167 36-222 64-234 (550)
21 1mky_A Probable GTP-binding pr 99.6 1.4E-15 4.8E-20 146.8 8.2 162 37-263 1-165 (439)
22 3lxx_A GTPase IMAP family memb 99.6 4.3E-15 1.5E-19 131.6 10.6 129 36-221 28-160 (239)
23 3lxw_A GTPase IMAP family memb 99.6 2E-15 6.9E-20 134.5 8.4 127 36-220 20-153 (247)
24 1svi_A GTP-binding protein YSX 99.6 1.1E-14 3.9E-19 124.3 12.7 124 36-222 22-150 (195)
25 1kao_A RAP2A; GTP-binding prot 99.6 4.5E-15 1.5E-19 123.0 9.6 116 38-221 4-123 (167)
26 2oil_A CATX-8, RAS-related pro 99.6 7.2E-15 2.5E-19 125.5 10.5 119 36-221 24-145 (193)
27 3tw8_B RAS-related protein RAB 99.6 2.4E-15 8.3E-20 126.6 7.2 118 36-221 8-128 (181)
28 3gee_A MNME, tRNA modification 99.6 4E-16 1.4E-20 151.2 2.7 122 38-222 234-359 (476)
29 3q72_A GTP-binding protein RAD 99.6 3E-15 1E-19 124.4 7.4 116 37-221 2-121 (166)
30 1g16_A RAS-related protein SEC 99.6 5.4E-15 1.8E-19 123.1 8.8 117 37-220 3-122 (170)
31 3i8s_A Ferrous iron transport 99.6 1.2E-15 4.2E-20 138.0 5.2 122 37-221 3-127 (274)
32 2a9k_A RAS-related protein RAL 99.6 9.2E-15 3.2E-19 123.6 10.4 118 36-221 17-138 (187)
33 2lkc_A Translation initiation 99.6 9.5E-15 3.3E-19 122.7 10.2 117 35-221 6-122 (178)
34 1xzp_A Probable tRNA modificat 99.6 1.3E-14 4.5E-19 140.7 12.6 157 38-261 244-402 (482)
35 1u8z_A RAS-related protein RAL 99.6 5.4E-15 1.9E-19 122.6 8.5 116 38-221 5-124 (168)
36 3bc1_A RAS-related protein RAB 99.6 1E-14 3.4E-19 124.2 10.3 69 139-221 70-142 (195)
37 3cph_A RAS-related protein SEC 99.6 1.1E-14 3.6E-19 126.3 10.6 157 36-263 19-181 (213)
38 2bme_A RAB4A, RAS-related prot 99.6 7.2E-15 2.5E-19 124.5 9.2 118 36-221 9-130 (186)
39 1z08_A RAS-related protein RAB 99.6 3.4E-15 1.1E-19 124.5 7.0 118 37-221 6-126 (170)
40 1z0f_A RAB14, member RAS oncog 99.6 6.3E-15 2.1E-19 123.8 8.7 119 36-221 14-135 (179)
41 3a1s_A Iron(II) transport prot 99.6 3.7E-15 1.3E-19 133.6 7.7 151 37-258 5-161 (258)
42 2g6b_A RAS-related protein RAB 99.6 9E-15 3.1E-19 123.1 9.6 121 36-221 9-131 (180)
43 2gf9_A RAS-related protein RAB 99.6 1.1E-14 3.8E-19 123.9 10.1 119 37-221 22-142 (189)
44 2il1_A RAB12; G-protein, GDP, 99.6 8.2E-15 2.8E-19 125.2 9.3 119 37-221 26-146 (192)
45 2hjg_A GTP-binding protein ENG 99.6 6E-15 2.1E-19 142.3 9.3 124 37-221 3-126 (436)
46 1zbd_A Rabphilin-3A; G protein 99.6 1.1E-14 3.6E-19 125.4 9.9 118 37-221 8-128 (203)
47 2fn4_A P23, RAS-related protei 99.6 1E-14 3.6E-19 122.6 9.7 117 36-221 8-129 (181)
48 3k53_A Ferrous iron transport 99.6 2.2E-14 7.4E-19 129.6 12.2 118 37-220 3-123 (271)
49 4djt_A GTP-binding nuclear pro 99.6 1E-14 3.6E-19 127.0 9.7 110 139-262 61-173 (218)
50 1c1y_A RAS-related protein RAP 99.6 8.7E-15 3E-19 121.5 8.7 117 38-221 4-123 (167)
51 1z0j_A RAB-22, RAS-related pro 99.6 9.3E-15 3.2E-19 121.6 8.9 118 37-221 6-126 (170)
52 2bov_A RAla, RAS-related prote 99.6 1.4E-14 4.8E-19 124.7 10.2 118 36-221 13-134 (206)
53 3geh_A MNME, tRNA modification 99.6 1.3E-15 4.3E-20 147.2 3.9 153 38-258 225-378 (462)
54 1upt_A ARL1, ADP-ribosylation 99.6 1.1E-14 3.8E-19 121.4 9.2 114 36-221 6-123 (171)
55 3clv_A RAB5 protein, putative; 99.5 2E-14 6.7E-19 123.3 11.0 65 139-217 93-158 (208)
56 3kkq_A RAS-related protein M-R 99.5 2.4E-14 8.2E-19 121.0 11.2 150 36-256 17-174 (183)
57 2nzj_A GTP-binding protein REM 99.5 1.2E-14 4.1E-19 121.7 9.3 119 37-221 4-126 (175)
58 2fg5_A RAB-22B, RAS-related pr 99.5 6.9E-15 2.4E-19 125.7 7.7 117 37-220 23-142 (192)
59 4dcu_A GTP-binding protein ENG 99.5 1.3E-14 4.4E-19 140.8 10.4 125 36-221 22-146 (456)
60 2bcg_Y Protein YP2, GTP-bindin 99.5 1.9E-14 6.3E-19 124.3 10.1 118 36-221 7-128 (206)
61 2f7s_A C25KG, RAS-related prot 99.5 3E-14 1E-18 123.9 11.5 102 139-258 84-193 (217)
62 3b1v_A Ferrous iron uptake tra 99.5 7.7E-15 2.6E-19 132.4 7.8 116 37-220 3-121 (272)
63 2a5j_A RAS-related protein RAB 99.5 1.9E-14 6.6E-19 122.7 9.8 118 37-221 21-141 (191)
64 2gj8_A MNME, tRNA modification 99.5 2.2E-14 7.5E-19 120.4 10.0 123 38-220 5-129 (172)
65 1z06_A RAS-related protein RAB 99.5 1.7E-14 5.7E-19 122.8 9.3 120 36-221 19-142 (189)
66 4dsu_A GTPase KRAS, isoform 2B 99.5 3.3E-14 1.1E-18 120.5 11.0 116 38-221 5-124 (189)
67 3q85_A GTP-binding protein REM 99.5 1.1E-14 3.8E-19 121.2 7.8 120 37-221 2-124 (169)
68 2ew1_A RAS-related protein RAB 99.5 1.8E-14 6E-19 124.3 9.3 118 37-221 26-146 (201)
69 1z2a_A RAS-related protein RAB 99.5 7.1E-15 2.4E-19 122.1 6.5 116 37-221 5-124 (168)
70 3dz8_A RAS-related protein RAB 99.5 8.7E-15 3E-19 124.9 7.0 120 36-221 22-143 (191)
71 2y8e_A RAB-protein 6, GH09086P 99.5 1.1E-14 3.6E-19 122.4 7.2 117 38-221 15-134 (179)
72 3t5g_A GTP-binding protein RHE 99.5 1.2E-14 4.1E-19 122.6 7.5 117 37-221 6-126 (181)
73 1wms_A RAB-9, RAB9, RAS-relate 99.5 2.8E-14 9.4E-19 119.8 9.7 117 36-220 6-130 (177)
74 1lnz_A SPO0B-associated GTP-bi 99.5 4.3E-15 1.5E-19 138.1 5.0 126 37-222 158-290 (342)
75 1r8s_A ADP-ribosylation factor 99.5 6.3E-14 2.1E-18 116.0 11.6 70 138-221 43-116 (164)
76 4dcu_A GTP-binding protein ENG 99.5 1.6E-14 5.5E-19 140.1 9.2 127 36-222 194-322 (456)
77 3oes_A GTPase rhebl1; small GT 99.5 1E-14 3.5E-19 125.5 6.9 118 36-221 23-144 (201)
78 2efe_B Small GTP-binding prote 99.5 1.8E-14 6.3E-19 121.3 8.3 118 37-221 12-132 (181)
79 1ek0_A Protein (GTP-binding pr 99.5 1.9E-14 6.6E-19 119.6 8.2 117 38-221 4-123 (170)
80 2erx_A GTP-binding protein DI- 99.5 1.6E-14 5.4E-19 120.4 7.6 117 38-221 4-124 (172)
81 1x3s_A RAS-related protein RAB 99.5 4.9E-14 1.7E-18 120.2 10.8 117 37-220 15-135 (195)
82 1vg8_A RAS-related protein RAB 99.5 2.4E-14 8.1E-19 123.5 8.7 119 36-221 7-132 (207)
83 2o52_A RAS-related protein RAB 99.5 2.2E-14 7.7E-19 123.4 8.5 153 36-260 24-184 (200)
84 2hup_A RAS-related protein RAB 99.5 4.2E-14 1.4E-18 121.8 10.1 70 139-221 78-149 (201)
85 4bas_A ADP-ribosylation factor 99.5 3.8E-14 1.3E-18 121.3 9.8 116 36-221 16-142 (199)
86 2cxx_A Probable GTP-binding pr 99.5 4.6E-14 1.6E-18 119.8 10.2 123 37-222 1-138 (190)
87 1r2q_A RAS-related protein RAB 99.5 3.1E-14 1.1E-18 118.3 8.9 118 37-221 6-126 (170)
88 2h57_A ADP-ribosylation factor 99.5 3.9E-14 1.3E-18 120.6 9.4 116 36-221 20-141 (190)
89 2ce2_X GTPase HRAS; signaling 99.5 2.3E-14 7.9E-19 118.4 7.7 116 38-221 4-123 (166)
90 2hjg_A GTP-binding protein ENG 99.5 3.3E-14 1.1E-18 137.1 9.8 127 36-222 174-302 (436)
91 3qq5_A Small GTP-binding prote 99.5 2.8E-14 9.6E-19 136.1 8.8 159 36-260 33-192 (423)
92 2p5s_A RAS and EF-hand domain 99.5 2.5E-14 8.6E-19 122.8 7.2 118 36-219 27-146 (199)
93 2atv_A RERG, RAS-like estrogen 99.5 5.1E-14 1.7E-18 120.6 9.0 118 36-221 27-147 (196)
94 1zd9_A ADP-ribosylation factor 99.5 8.7E-13 3E-17 112.1 16.5 115 36-221 21-139 (188)
95 1zj6_A ADP-ribosylation factor 99.5 7.3E-14 2.5E-18 118.6 9.7 114 36-221 15-132 (187)
96 2x77_A ADP-ribosylation factor 99.5 5.5E-14 1.9E-18 119.5 9.0 114 36-221 21-138 (189)
97 2wji_A Ferrous iron transport 99.5 1.2E-14 4.3E-19 121.0 4.8 116 38-220 4-122 (165)
98 1ksh_A ARF-like protein 2; sma 99.5 1E-13 3.6E-18 117.4 10.3 114 36-221 17-134 (186)
99 2fu5_C RAS-related protein RAB 99.5 1.4E-14 4.6E-19 122.5 4.3 69 139-221 57-128 (183)
100 1moz_A ARL1, ADP-ribosylation 99.5 8.5E-14 2.9E-18 117.5 8.9 114 36-221 17-134 (183)
101 1ky3_A GTP-binding protein YPT 99.5 9.5E-14 3.3E-18 116.8 9.2 153 36-257 7-171 (182)
102 2q3h_A RAS homolog gene family 99.5 7.5E-14 2.6E-18 119.9 8.7 118 35-221 18-139 (201)
103 2yc2_C IFT27, small RAB-relate 99.5 3.6E-14 1.2E-18 122.3 6.4 68 139-220 73-146 (208)
104 2hxs_A RAB-26, RAS-related pro 99.5 5.6E-14 1.9E-18 117.9 7.4 26 37-62 6-31 (178)
105 2e87_A Hypothetical protein PH 99.5 3.1E-13 1.1E-17 126.9 13.1 126 35-221 165-295 (357)
106 3con_A GTPase NRAS; structural 99.5 9.4E-14 3.2E-18 118.1 8.7 115 38-220 22-140 (190)
107 3cpj_B GTP-binding protein YPT 99.5 7.7E-14 2.6E-18 122.1 8.2 119 36-221 12-133 (223)
108 3cbq_A GTP-binding protein REM 99.5 2.2E-13 7.4E-18 116.8 10.0 71 139-221 72-145 (195)
109 1h65_A Chloroplast outer envel 99.5 2.1E-13 7E-18 123.1 10.3 126 36-222 38-170 (270)
110 2h17_A ADP-ribosylation factor 99.4 1.5E-13 5.2E-18 116.0 8.5 114 36-221 20-137 (181)
111 3reg_A RHO-like small GTPase; 99.4 6.6E-14 2.3E-18 119.6 6.3 116 37-221 23-142 (194)
112 2ged_A SR-beta, signal recogni 99.4 5.8E-13 2E-17 113.4 12.0 119 36-222 47-172 (193)
113 1fzq_A ADP-ribosylation factor 99.4 3.2E-13 1.1E-17 114.2 10.2 114 36-221 15-132 (181)
114 2fh5_B SR-beta, signal recogni 99.4 3.7E-13 1.3E-17 116.8 10.8 119 36-222 6-131 (214)
115 2b6h_A ADP-ribosylation factor 99.4 1.6E-13 5.6E-18 117.1 8.4 113 37-221 29-145 (192)
116 4a9a_A Ribosome-interacting GT 99.4 2.4E-13 8.1E-18 127.3 10.1 122 36-219 71-195 (376)
117 3c5c_A RAS-like protein 12; GD 99.4 1.1E-13 3.8E-18 117.6 7.2 116 37-221 21-142 (187)
118 2gco_A H9, RHO-related GTP-bin 99.4 9.2E-14 3.1E-18 119.6 6.3 116 38-221 26-144 (201)
119 2atx_A Small GTP binding prote 99.4 1.3E-13 4.4E-18 117.7 7.1 117 37-221 18-137 (194)
120 2gf0_A GTP-binding protein DI- 99.4 2.5E-13 8.5E-18 116.2 8.9 119 36-221 7-129 (199)
121 1mh1_A RAC1; GTP-binding, GTPa 99.4 7.5E-14 2.6E-18 118.0 5.6 116 38-221 6-124 (186)
122 2fv8_A H6, RHO-related GTP-bin 99.4 7.9E-14 2.7E-18 120.5 5.6 116 38-221 26-144 (207)
123 2wjg_A FEOB, ferrous iron tran 99.4 6.9E-14 2.3E-18 118.7 5.0 118 37-220 7-126 (188)
124 2j1l_A RHO-related GTP-binding 99.4 1E-13 3.4E-18 120.6 5.3 116 37-221 34-153 (214)
125 3l0i_B RAS-related protein RAB 99.4 1.4E-14 4.9E-19 124.4 -0.1 118 36-221 32-153 (199)
126 1m2o_B GTP-binding protein SAR 99.4 8.5E-13 2.9E-17 112.5 11.0 113 36-220 22-138 (190)
127 3llu_A RAS-related GTP-binding 99.4 1.5E-12 5E-17 111.5 12.4 120 36-221 19-144 (196)
128 1f6b_A SAR1; gtpases, N-termin 99.4 5.5E-13 1.9E-17 114.5 9.5 113 36-220 24-140 (198)
129 3def_A T7I23.11 protein; chlor 99.4 6.4E-13 2.2E-17 119.3 10.1 125 36-221 35-166 (262)
130 4dkx_A RAS-related protein RAB 99.4 3.8E-13 1.3E-17 117.1 7.7 101 139-256 62-168 (216)
131 2j0v_A RAC-like GTP-binding pr 99.4 1E-13 3.5E-18 120.1 4.1 116 37-221 9-128 (212)
132 3bwd_D RAC-like GTP-binding pr 99.4 4.7E-14 1.6E-18 118.9 1.5 68 139-221 56-127 (182)
133 4gzl_A RAS-related C3 botulinu 99.4 2.2E-13 7.4E-18 117.6 5.7 118 36-222 29-150 (204)
134 3q3j_B RHO-related GTP-binding 99.4 1.9E-13 6.5E-18 118.9 5.3 117 37-221 27-146 (214)
135 2iwr_A Centaurin gamma 1; ANK 99.4 9.8E-13 3.4E-17 110.4 9.1 25 38-62 8-32 (178)
136 3th5_A RAS-related C3 botulinu 99.1 3.6E-14 1.2E-18 122.3 0.0 69 139-221 78-149 (204)
137 3t1o_A Gliding protein MGLA; G 99.4 2.8E-12 9.4E-17 109.3 11.8 70 139-221 74-150 (198)
138 1mky_A Probable GTP-binding pr 99.4 2.1E-12 7.2E-17 124.5 12.3 128 36-222 179-308 (439)
139 3gj0_A GTP-binding nuclear pro 99.4 1.7E-13 5.7E-18 119.7 3.7 68 139-221 64-134 (221)
140 3ihw_A Centg3; RAS, centaurin, 99.4 1.2E-12 4.2E-17 110.9 9.0 26 37-62 20-45 (184)
141 3o47_A ADP-ribosylation factor 99.4 1E-12 3.5E-17 121.9 9.1 113 39-222 167-282 (329)
142 1m7b_A RND3/RHOE small GTP-bin 99.4 7.4E-13 2.5E-17 112.1 6.6 117 36-221 6-126 (184)
143 3dpu_A RAB family protein; roc 99.3 6E-12 2E-16 124.4 13.3 108 138-260 97-204 (535)
144 3r7w_A Gtpase1, GTP-binding pr 99.3 3.1E-12 1.1E-16 117.5 10.2 74 138-220 51-129 (307)
145 1wxq_A GTP-binding protein; st 99.3 1.1E-13 3.6E-18 131.4 0.0 35 39-74 2-37 (397)
146 1gwn_A RHO-related GTP-binding 99.3 9.8E-13 3.4E-17 113.6 5.8 117 36-221 27-147 (205)
147 3izy_P Translation initiation 99.3 3.5E-13 1.2E-17 131.9 2.8 117 36-221 3-119 (537)
148 1nrj_B SR-beta, signal recogni 99.3 1.2E-11 4E-16 107.5 12.2 27 36-62 11-37 (218)
149 3lvq_E ARF-GAP with SH3 domain 99.3 2.5E-11 8.5E-16 119.0 15.5 112 38-221 323-438 (497)
150 2wkq_A NPH1-1, RAS-related C3 99.3 3.8E-12 1.3E-16 117.8 8.8 117 36-221 154-274 (332)
151 2g3y_A GTP-binding protein GEM 99.3 6E-12 2E-16 109.2 9.3 69 140-220 88-159 (211)
152 2qag_A Septin-2, protein NEDD5 99.3 4.4E-12 1.5E-16 119.0 8.6 81 140-222 96-190 (361)
153 3sjy_A Translation initiation 99.3 3.4E-11 1.2E-15 114.8 13.7 68 139-222 75-145 (403)
154 3j2k_7 ERF3, eukaryotic polype 99.3 2.5E-11 8.6E-16 116.8 12.3 147 36-220 16-169 (439)
155 3tr5_A RF-3, peptide chain rel 99.3 1.2E-11 4E-16 121.4 9.5 69 138-221 81-149 (528)
156 1wb1_A Translation elongation 99.3 1.6E-11 5.3E-16 119.6 10.1 68 139-221 73-140 (482)
157 2cjw_A GTP-binding protein GEM 99.2 1E-11 3.4E-16 106.0 7.1 69 140-220 57-128 (192)
158 2f9l_A RAB11B, member RAS onco 99.2 2.5E-11 8.4E-16 104.0 9.5 26 37-62 5-30 (199)
159 2zej_A Dardarin, leucine-rich 99.2 1.2E-11 4.2E-16 104.6 6.9 23 38-60 3-25 (184)
160 1zo1_I IF2, translation initia 99.2 2.7E-12 9.2E-17 124.6 2.9 115 36-220 3-117 (501)
161 3p26_A Elongation factor 1 alp 99.2 1.7E-11 6E-16 119.5 8.0 85 122-221 95-186 (483)
162 3izq_1 HBS1P, elongation facto 99.2 4.4E-11 1.5E-15 119.4 10.9 148 35-220 165-319 (611)
163 3p32_A Probable GTPase RV1496/ 99.2 1.3E-10 4.3E-15 108.9 13.2 24 36-59 78-101 (355)
164 1g7s_A Translation initiation 99.2 1.7E-11 5.8E-16 121.8 7.5 66 140-220 71-136 (594)
165 2ywe_A GTP-binding protein LEP 99.2 3.6E-11 1.2E-15 119.2 9.5 134 36-221 5-140 (600)
166 1s0u_A EIF-2-gamma, translatio 99.2 2E-10 6.9E-15 109.6 14.0 68 139-222 81-151 (408)
167 1kk1_A EIF2gamma; initiation o 99.2 8.3E-11 2.8E-15 112.4 11.0 67 139-221 83-152 (410)
168 2www_A Methylmalonic aciduria 99.2 2E-10 6.8E-15 107.2 12.7 25 36-60 73-97 (349)
169 3cb4_D GTP-binding protein LEP 99.2 5.4E-11 1.8E-15 118.1 9.1 68 139-221 71-138 (599)
170 2elf_A Protein translation elo 99.2 1.4E-10 4.7E-15 109.0 11.2 64 139-218 60-125 (370)
171 2h5e_A Peptide chain release f 99.2 1.3E-10 4.6E-15 114.0 11.4 70 137-221 80-149 (529)
172 1pui_A ENGB, probable GTP-bind 99.1 2.2E-10 7.4E-15 98.8 11.0 78 140-222 73-153 (210)
173 1oix_A RAS-related protein RAB 99.1 9.5E-11 3.3E-15 99.8 8.4 26 37-62 29-54 (191)
174 1udx_A The GTP-binding protein 99.1 9.4E-11 3.2E-15 111.4 8.6 26 36-61 156-181 (416)
175 2c78_A Elongation factor TU-A; 99.1 2.6E-10 8.9E-15 108.7 10.8 69 137-220 73-142 (405)
176 1jny_A EF-1-alpha, elongation 99.1 3.9E-10 1.3E-14 108.5 11.4 69 137-220 82-158 (435)
177 1zun_B Sulfate adenylate trans 99.1 8E-10 2.7E-14 106.3 13.3 148 36-221 23-172 (434)
178 2xex_A Elongation factor G; GT 99.1 1.2E-10 4.2E-15 118.0 7.4 69 138-221 74-142 (693)
179 2rdo_7 EF-G, elongation factor 99.0 1.1E-09 3.6E-14 111.3 12.7 68 139-221 82-149 (704)
180 1jal_A YCHF protein; nucleotid 99.0 2.4E-10 8.3E-15 106.3 7.0 37 38-74 3-39 (363)
181 2qag_C Septin-7; cell cycle, c 99.0 2.6E-09 8.7E-14 101.6 14.1 81 139-221 88-182 (418)
182 1dar_A EF-G, elongation factor 99.0 3.8E-10 1.3E-14 114.4 8.9 69 138-221 76-144 (691)
183 1d2e_A Elongation factor TU (E 99.0 6.8E-10 2.3E-14 105.5 10.0 69 137-220 64-133 (397)
184 1f60_A Elongation factor EEF1A 99.0 6.4E-10 2.2E-14 107.6 9.5 145 36-220 6-159 (458)
185 2qag_B Septin-6, protein NEDD5 99.0 7.8E-10 2.7E-14 104.8 9.2 83 139-223 95-193 (427)
186 3mca_A HBS1, elongation factor 99.0 1.3E-11 4.4E-16 123.0 -3.3 69 138-220 254-329 (592)
187 3vqt_A RF-3, peptide chain rel 99.0 4.3E-10 1.5E-14 110.9 7.0 70 137-221 98-167 (548)
188 1n0u_A EF-2, elongation factor 99.0 4E-10 1.4E-14 116.6 6.9 67 138-219 97-163 (842)
189 2qnr_A Septin-2, protein NEDD5 99.0 5.3E-10 1.8E-14 102.2 6.7 29 38-66 19-47 (301)
190 2p67_A LAO/AO transport system 99.0 1.9E-09 6.5E-14 100.3 10.6 24 36-59 55-78 (341)
191 3ec1_A YQEH GTPase; atnos1, at 98.9 3.4E-10 1.2E-14 106.4 3.9 23 38-60 163-185 (369)
192 3c5h_A Glucocorticoid receptor 98.9 1.1E-09 3.7E-14 97.7 5.3 25 36-60 18-51 (255)
193 1r5b_A Eukaryotic peptide chai 98.9 9.6E-10 3.3E-14 106.6 5.3 69 138-220 120-195 (467)
194 2ohf_A Protein OLA1, GTP-bindi 98.9 2.5E-09 8.5E-14 100.5 6.9 27 36-62 21-47 (396)
195 3avx_A Elongation factor TS, e 98.8 3.8E-09 1.3E-13 110.2 8.0 70 137-221 357-427 (1289)
196 3r7w_B Gtpase2, GTP-binding pr 98.8 3.2E-08 1.1E-12 90.5 13.2 73 138-222 45-122 (331)
197 3sop_A Neuronal-specific septi 98.8 9.8E-09 3.4E-13 92.2 9.6 83 139-223 60-157 (270)
198 4fn5_A EF-G 1, elongation fact 98.8 2.1E-09 7E-14 109.5 5.5 135 36-221 12-152 (709)
199 3h2y_A GTPase family protein; 98.8 1.4E-09 4.7E-14 102.2 3.9 24 38-61 161-184 (368)
200 2dby_A GTP-binding protein; GD 98.8 6.8E-09 2.3E-13 97.1 8.5 38 38-75 2-39 (368)
201 2qm8_A GTPase/ATPase; G protei 98.8 7.1E-09 2.4E-13 96.2 8.4 25 36-60 54-78 (337)
202 2dy1_A Elongation factor G; tr 98.8 1.1E-08 3.6E-13 103.5 10.0 132 36-219 8-139 (665)
203 3j25_A Tetracycline resistance 98.8 1.5E-09 5.2E-14 109.1 2.9 71 136-221 64-134 (638)
204 2j37_W Signal recognition part 98.8 7.6E-08 2.6E-12 93.4 14.5 78 138-227 183-261 (504)
205 1yrb_A ATP(GTP)binding protein 98.7 5.9E-08 2E-12 86.5 11.5 30 36-65 13-47 (262)
206 3dm5_A SRP54, signal recogniti 98.7 3.3E-07 1.1E-11 87.2 15.9 81 139-230 183-263 (443)
207 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 3.3E-08 1.1E-12 93.1 8.5 40 36-75 19-59 (392)
208 1tq4_A IIGP1, interferon-induc 98.7 9E-08 3.1E-12 90.7 11.1 120 36-219 68-188 (413)
209 1puj_A YLQF, conserved hypothe 98.6 4.5E-08 1.6E-12 88.4 7.0 31 37-67 120-150 (282)
210 2wsm_A Hydrogenase expression/ 98.6 3.5E-08 1.2E-12 85.5 5.6 25 36-60 29-53 (221)
211 3kl4_A SRP54, signal recogniti 98.5 1.1E-06 3.8E-11 83.6 13.6 83 138-229 179-261 (433)
212 1f5n_A Interferon-induced guan 98.4 3.5E-07 1.2E-11 90.3 8.6 27 36-62 37-63 (592)
213 2v3c_C SRP54, signal recogniti 98.4 9E-07 3.1E-11 84.5 10.1 81 137-228 179-260 (432)
214 2hf9_A Probable hydrogenase ni 98.4 7.2E-07 2.5E-11 77.4 7.5 26 36-61 37-62 (226)
215 3cnl_A YLQF, putative uncharac 98.4 2.7E-07 9.1E-12 82.4 4.7 26 38-63 100-125 (262)
216 3e70_C DPA, signal recognition 98.2 1E-05 3.6E-10 74.3 11.5 79 140-229 213-291 (328)
217 1j8m_F SRP54, signal recogniti 98.2 1.8E-05 6E-10 71.8 12.7 83 138-229 180-262 (297)
218 1rj9_A FTSY, signal recognitio 98.1 1.2E-05 4.3E-10 73.1 11.0 86 140-230 186-271 (304)
219 2xxa_A Signal recognition part 98.1 3E-05 1E-09 74.0 12.4 79 139-228 184-262 (433)
220 2yhs_A FTSY, cell division pro 98.0 2.7E-05 9.3E-10 74.9 10.7 83 139-230 376-462 (503)
221 3q5d_A Atlastin-1; G protein, 98.0 3.4E-06 1.2E-10 80.5 3.7 25 36-60 66-90 (447)
222 1vma_A Cell division protein F 97.9 8.9E-06 3E-10 74.0 5.8 84 138-230 186-273 (306)
223 1zu4_A FTSY; GTPase, signal re 97.8 0.001 3.5E-08 60.8 17.4 84 138-230 191-278 (320)
224 2ffh_A Protein (FFH); SRP54, s 97.8 0.00026 9E-09 67.1 12.8 79 139-228 181-259 (425)
225 2px0_A Flagellar biosynthesis 97.7 0.00041 1.4E-08 62.8 12.6 23 38-60 106-128 (296)
226 3b9q_A Chloroplast SRP recepto 97.6 0.00021 7E-09 64.9 9.2 86 140-230 185-270 (302)
227 2og2_A Putative signal recogni 97.6 0.00029 1E-08 65.3 10.2 86 140-230 242-327 (359)
228 1ls1_A Signal recognition part 97.3 0.0014 4.8E-08 59.2 11.2 81 139-230 181-261 (295)
229 1t9h_A YLOQ, probable GTPase E 97.3 7.9E-05 2.7E-09 67.7 2.6 24 38-61 174-197 (307)
230 4dzz_A Plasmid partitioning pr 97.0 0.003 1E-07 53.2 8.9 64 139-220 76-144 (206)
231 1u0l_A Probable GTPase ENGC; p 96.8 0.00044 1.5E-08 62.7 2.4 67 140-221 64-130 (301)
232 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0011 3.6E-08 63.1 4.3 23 36-58 66-88 (457)
233 1kgd_A CASK, peripheral plasma 96.5 0.001 3.4E-08 55.4 2.4 23 38-60 6-28 (180)
234 1ye8_A Protein THEP1, hypothet 96.5 0.0011 3.7E-08 55.2 2.6 22 39-60 2-23 (178)
235 3ney_A 55 kDa erythrocyte memb 96.5 0.0011 3.7E-08 56.1 2.5 23 38-60 20-42 (197)
236 1lvg_A Guanylate kinase, GMP k 96.5 0.001 3.5E-08 56.3 2.4 23 38-60 5-27 (198)
237 2rcn_A Probable GTPase ENGC; Y 96.5 0.0017 5.9E-08 60.0 4.1 23 39-61 217-239 (358)
238 1u0l_A Probable GTPase ENGC; p 96.4 0.003 1E-07 57.1 5.3 24 38-61 170-193 (301)
239 3end_A Light-independent proto 96.4 0.014 4.8E-07 52.7 9.5 65 138-218 156-225 (307)
240 1znw_A Guanylate kinase, GMP k 96.4 0.0013 4.4E-08 56.0 2.4 22 39-60 22-43 (207)
241 3tif_A Uncharacterized ABC tra 96.3 0.002 6.8E-08 56.1 3.1 23 39-61 33-55 (235)
242 3tr0_A Guanylate kinase, GMP k 96.3 0.0017 5.7E-08 54.9 2.4 23 38-60 8-30 (205)
243 1zp6_A Hypothetical protein AT 96.3 0.002 7E-08 53.7 2.9 22 39-60 11-32 (191)
244 3a00_A Guanylate kinase, GMP k 96.2 0.0018 6E-08 54.1 2.3 22 39-60 3-24 (186)
245 1ex7_A Guanylate kinase; subst 96.2 0.0018 6.1E-08 54.2 2.4 35 40-74 4-40 (186)
246 1s96_A Guanylate kinase, GMP k 96.2 0.0018 6.2E-08 55.8 2.4 24 38-61 17-40 (219)
247 1z6g_A Guanylate kinase; struc 96.2 0.0018 6.1E-08 55.7 2.4 23 39-61 25-47 (218)
248 2pcj_A ABC transporter, lipopr 96.2 0.0021 7.2E-08 55.5 2.7 23 39-61 32-54 (224)
249 1np6_A Molybdopterin-guanine d 96.2 0.0023 8E-08 52.9 2.8 25 36-60 5-29 (174)
250 3c8u_A Fructokinase; YP_612366 96.2 0.0017 5.9E-08 55.2 2.1 23 38-60 23-45 (208)
251 1sgw_A Putative ABC transporte 96.2 0.0026 9E-08 54.5 3.1 23 39-61 37-59 (214)
252 2onk_A Molybdate/tungstate ABC 96.1 0.0027 9.4E-08 55.4 3.1 24 38-61 25-48 (240)
253 2cbz_A Multidrug resistance-as 96.1 0.0029 1E-07 55.1 3.2 23 39-61 33-55 (237)
254 4g1u_C Hemin import ATP-bindin 96.1 0.0028 9.4E-08 56.3 3.1 23 39-61 39-61 (266)
255 3gfo_A Cobalt import ATP-bindi 96.1 0.0029 9.8E-08 56.5 3.1 23 39-61 36-58 (275)
256 1mv5_A LMRA, multidrug resista 96.1 0.0032 1.1E-07 55.1 3.3 23 39-61 30-52 (243)
257 4gp7_A Metallophosphoesterase; 96.1 0.0031 1E-07 51.9 3.0 21 39-59 11-31 (171)
258 4fid_A G protein alpha subunit 96.1 0.011 3.7E-07 54.3 6.9 71 137-220 159-242 (340)
259 1b0u_A Histidine permease; ABC 96.1 0.003 1E-07 55.9 3.1 23 39-61 34-56 (262)
260 1g6h_A High-affinity branched- 96.1 0.003 1E-07 55.8 3.1 23 39-61 35-57 (257)
261 2pze_A Cystic fibrosis transme 96.1 0.0031 1.1E-07 54.6 3.1 23 39-61 36-58 (229)
262 3tau_A Guanylate kinase, GMP k 96.0 0.0034 1.2E-07 53.4 3.2 23 38-60 9-31 (208)
263 2ff7_A Alpha-hemolysin translo 96.0 0.0032 1.1E-07 55.2 3.1 23 39-61 37-59 (247)
264 1htw_A HI0065; nucleotide-bind 96.0 0.0027 9.4E-08 51.6 2.4 23 39-61 35-57 (158)
265 2eyu_A Twitching motility prot 96.0 0.0026 8.9E-08 56.3 2.4 22 39-60 27-48 (261)
266 2qi9_C Vitamin B12 import ATP- 96.0 0.0034 1.2E-07 55.1 3.1 23 39-61 28-50 (249)
267 1vpl_A ABC transporter, ATP-bi 96.0 0.0035 1.2E-07 55.3 3.1 23 39-61 43-65 (256)
268 1ji0_A ABC transporter; ATP bi 96.0 0.0034 1.2E-07 54.8 3.1 23 39-61 34-56 (240)
269 2olj_A Amino acid ABC transpor 96.0 0.0035 1.2E-07 55.5 3.1 23 39-61 52-74 (263)
270 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0031 1E-07 57.9 2.7 23 39-61 173-195 (330)
271 2gza_A Type IV secretion syste 96.0 0.0034 1.2E-07 58.4 3.1 23 38-60 176-198 (361)
272 2ghi_A Transport protein; mult 95.9 0.0039 1.3E-07 55.2 3.2 23 39-61 48-70 (260)
273 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0037 1.3E-07 54.9 3.1 22 39-60 31-52 (250)
274 2zu0_C Probable ATP-dependent 95.9 0.004 1.4E-07 55.3 3.1 22 39-60 48-69 (267)
275 2nq2_C Hypothetical ABC transp 95.9 0.004 1.4E-07 54.8 3.1 23 39-61 33-55 (253)
276 2ixe_A Antigen peptide transpo 95.9 0.0043 1.5E-07 55.2 3.2 23 39-61 47-69 (271)
277 2ihy_A ABC transporter, ATP-bi 95.9 0.0044 1.5E-07 55.4 3.3 23 39-61 49-71 (279)
278 2oap_1 GSPE-2, type II secreti 95.9 0.0035 1.2E-07 61.0 2.8 22 39-60 262-283 (511)
279 2v9p_A Replication protein E1; 95.8 0.0034 1.2E-07 56.8 2.5 22 39-60 128-149 (305)
280 2yz2_A Putative ABC transporte 95.8 0.0042 1.4E-07 55.1 3.1 23 39-61 35-57 (266)
281 2yv5_A YJEQ protein; hydrolase 95.8 0.002 6.8E-08 58.4 0.9 55 167-221 71-125 (302)
282 3b85_A Phosphate starvation-in 95.8 0.0029 1E-07 54.0 1.8 23 38-60 23-45 (208)
283 1kag_A SKI, shikimate kinase I 95.8 0.0038 1.3E-07 51.1 2.4 23 38-60 5-27 (173)
284 3asz_A Uridine kinase; cytidin 95.8 0.0032 1.1E-07 53.4 2.0 22 39-60 8-29 (211)
285 2f1r_A Molybdopterin-guanine d 95.8 0.0018 6.2E-08 53.4 0.3 23 38-60 3-25 (171)
286 2yv5_A YJEQ protein; hydrolase 95.8 0.0063 2.2E-07 55.0 4.0 23 38-61 166-188 (302)
287 4f4c_A Multidrug resistance pr 95.8 0.015 5.2E-07 63.1 7.5 52 162-215 1222-1274(1321)
288 3ec2_A DNA replication protein 95.8 0.0078 2.7E-07 49.7 4.2 23 38-60 39-61 (180)
289 2j41_A Guanylate kinase; GMP, 95.7 0.0041 1.4E-07 52.4 2.5 24 38-61 7-30 (207)
290 1cip_A Protein (guanine nucleo 95.7 0.0085 2.9E-07 55.4 4.7 69 138-219 192-273 (353)
291 2bdt_A BH3686; alpha-beta prot 95.7 0.0042 1.4E-07 51.8 2.4 21 39-59 4-24 (189)
292 3nh6_A ATP-binding cassette SU 95.7 0.0036 1.2E-07 56.7 2.0 23 39-61 82-104 (306)
293 2pjz_A Hypothetical protein ST 95.7 0.0059 2E-07 54.0 3.3 23 39-61 32-54 (263)
294 2bbw_A Adenylate kinase 4, AK4 95.7 0.0067 2.3E-07 52.9 3.6 24 38-61 28-54 (246)
295 2i3b_A HCR-ntpase, human cance 95.7 0.0047 1.6E-07 51.8 2.4 22 39-60 3-24 (189)
296 3jvv_A Twitching mobility prot 95.6 0.0043 1.5E-07 57.5 2.4 22 39-60 125-146 (356)
297 4eun_A Thermoresistant glucoki 95.6 0.0046 1.6E-07 52.1 2.4 23 38-60 30-52 (200)
298 3ohm_A Guanine nucleotide-bind 95.6 0.014 4.8E-07 53.3 5.7 71 137-220 165-248 (327)
299 1odf_A YGR205W, hypothetical 3 95.6 0.012 4.1E-07 52.9 5.1 24 37-60 31-54 (290)
300 1zcb_A G alpha I/13; GTP-bindi 95.6 0.0084 2.9E-07 55.6 4.1 70 138-220 200-282 (362)
301 3lw7_A Adenylate kinase relate 95.6 0.0071 2.4E-07 49.2 3.2 20 38-57 2-21 (179)
302 3lnc_A Guanylate kinase, GMP k 95.5 0.0041 1.4E-07 53.7 1.7 23 38-60 28-51 (231)
303 1puj_A YLQF, conserved hypothe 95.5 0.016 5.5E-07 51.8 5.6 89 166-262 14-104 (282)
304 2qor_A Guanylate kinase; phosp 95.5 0.007 2.4E-07 51.2 3.0 25 36-60 11-35 (204)
305 2bbs_A Cystic fibrosis transme 95.5 0.0062 2.1E-07 54.7 2.7 23 39-61 66-88 (290)
306 3aez_A Pantothenate kinase; tr 95.4 0.0057 1.9E-07 55.6 2.4 23 38-60 91-113 (312)
307 3tui_C Methionine import ATP-b 95.4 0.0077 2.6E-07 55.8 3.1 23 39-61 56-78 (366)
308 4f4c_A Multidrug resistance pr 95.4 0.011 3.9E-07 64.1 4.9 23 39-61 446-468 (1321)
309 1knq_A Gluconate kinase; ALFA/ 95.4 0.0064 2.2E-07 49.9 2.4 22 38-59 9-30 (175)
310 1xjc_A MOBB protein homolog; s 95.4 0.0099 3.4E-07 48.8 3.4 25 36-60 3-27 (169)
311 3kb2_A SPBC2 prophage-derived 95.3 0.0093 3.2E-07 48.5 3.2 22 38-59 2-23 (173)
312 1z47_A CYSA, putative ABC-tran 95.3 0.0081 2.8E-07 55.5 3.1 23 39-61 43-65 (355)
313 1p9r_A General secretion pathw 95.3 0.0064 2.2E-07 57.6 2.4 22 39-60 169-190 (418)
314 3fvq_A Fe(3+) IONS import ATP- 95.3 0.0075 2.6E-07 55.8 2.7 23 39-61 32-54 (359)
315 4a74_A DNA repair and recombin 95.3 0.0096 3.3E-07 51.0 3.2 28 39-66 27-54 (231)
316 1cke_A CK, MSSA, protein (cyti 95.3 0.0081 2.8E-07 51.5 2.7 22 38-59 6-27 (227)
317 3rlf_A Maltose/maltodextrin im 95.3 0.0089 3.1E-07 55.7 3.1 23 39-61 31-53 (381)
318 3uie_A Adenylyl-sulfate kinase 95.3 0.0074 2.5E-07 50.8 2.4 23 38-60 26-48 (200)
319 2yyz_A Sugar ABC transporter, 95.3 0.0089 3E-07 55.3 3.1 23 39-61 31-53 (359)
320 2ewv_A Twitching motility prot 95.2 0.0069 2.3E-07 56.5 2.3 22 39-60 138-159 (372)
321 2it1_A 362AA long hypothetical 95.2 0.0092 3.1E-07 55.3 3.1 23 39-61 31-53 (362)
322 1nij_A Hypothetical protein YJ 95.2 0.0051 1.8E-07 56.1 1.2 26 36-61 3-28 (318)
323 1g29_1 MALK, maltose transport 95.2 0.0097 3.3E-07 55.4 3.1 23 39-61 31-53 (372)
324 4e22_A Cytidylate kinase; P-lo 95.2 0.008 2.8E-07 52.8 2.4 26 37-62 27-55 (252)
325 2kjq_A DNAA-related protein; s 95.2 0.0071 2.4E-07 48.6 1.8 24 37-60 36-59 (149)
326 2jeo_A Uridine-cytidine kinase 95.2 0.0081 2.8E-07 52.4 2.4 22 39-60 27-48 (245)
327 1v43_A Sugar-binding transport 95.1 0.01 3.5E-07 55.2 3.1 23 39-61 39-61 (372)
328 3kta_A Chromosome segregation 95.1 0.0077 2.6E-07 49.7 2.1 23 38-60 27-49 (182)
329 1jjv_A Dephospho-COA kinase; P 95.1 0.011 3.8E-07 49.9 3.1 22 39-60 4-25 (206)
330 3t61_A Gluconokinase; PSI-biol 95.0 0.01 3.4E-07 50.0 2.5 22 38-59 19-40 (202)
331 1lw7_A Transcriptional regulat 95.0 0.0081 2.8E-07 55.8 2.0 24 38-61 171-194 (365)
332 1ly1_A Polynucleotide kinase; 95.0 0.013 4.4E-07 48.0 3.0 21 39-59 4-24 (181)
333 2qt1_A Nicotinamide riboside k 94.9 0.012 4.2E-07 49.7 2.8 23 38-60 22-44 (207)
334 3d31_A Sulfate/molybdate ABC t 94.9 0.0084 2.9E-07 55.3 1.9 23 39-61 28-50 (348)
335 2if2_A Dephospho-COA kinase; a 94.9 0.01 3.4E-07 50.0 2.2 21 39-59 3-23 (204)
336 2jaq_A Deoxyguanosine kinase; 94.9 0.015 5E-07 48.7 3.3 21 39-59 2-22 (205)
337 2ehv_A Hypothetical protein PH 94.9 0.014 4.7E-07 50.7 3.0 21 39-59 32-52 (251)
338 3gd7_A Fusion complex of cysti 94.8 0.014 4.6E-07 54.7 3.0 23 39-61 49-71 (390)
339 1sq5_A Pantothenate kinase; P- 94.8 0.01 3.4E-07 53.8 2.1 22 39-60 82-103 (308)
340 2vp4_A Deoxynucleoside kinase; 94.8 0.012 4.1E-07 50.8 2.4 22 39-60 22-43 (230)
341 1qhx_A CPT, protein (chloramph 94.8 0.016 5.4E-07 47.5 3.0 21 39-59 5-25 (178)
342 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.016 5.4E-07 46.5 2.8 21 38-58 24-44 (149)
343 2npi_A Protein CLP1; CLP1-PCF1 94.7 0.012 3.9E-07 56.5 2.2 25 37-61 138-162 (460)
344 3vaa_A Shikimate kinase, SK; s 94.7 0.018 6.3E-07 48.3 3.3 22 38-59 26-47 (199)
345 3trf_A Shikimate kinase, SK; a 94.7 0.018 6.3E-07 47.5 3.2 22 37-58 5-26 (185)
346 1rz3_A Hypothetical protein rb 94.7 0.012 4E-07 49.7 2.1 23 38-60 23-45 (201)
347 1oxx_K GLCV, glucose, ABC tran 94.7 0.0083 2.9E-07 55.4 1.1 23 39-61 33-55 (353)
348 1kht_A Adenylate kinase; phosp 94.6 0.018 6.2E-07 47.6 3.0 22 38-59 4-25 (192)
349 4b4t_L 26S protease subunit RP 94.6 0.23 7.8E-06 47.0 10.8 25 36-60 213-238 (437)
350 1nks_A Adenylate kinase; therm 94.5 0.017 5.7E-07 47.9 2.6 22 38-59 2-23 (194)
351 1y63_A LMAJ004144AAA protein; 94.5 0.022 7.5E-07 47.2 3.2 24 37-60 10-33 (184)
352 2x8a_A Nuclear valosin-contain 94.5 0.016 5.3E-07 51.6 2.4 21 40-60 47-67 (274)
353 3qf7_A RAD50; ABC-ATPase, ATPa 94.4 0.019 6.4E-07 53.4 3.0 22 37-58 23-44 (365)
354 2iyv_A Shikimate kinase, SK; t 94.4 0.021 7.1E-07 47.1 3.0 21 38-58 3-23 (184)
355 3cm0_A Adenylate kinase; ATP-b 94.4 0.021 7.3E-07 47.1 3.0 20 39-58 6-25 (186)
356 1via_A Shikimate kinase; struc 94.4 0.023 7.7E-07 46.6 3.1 22 38-59 5-26 (175)
357 3iij_A Coilin-interacting nucl 94.4 0.023 7.8E-07 46.8 3.1 22 37-58 11-32 (180)
358 3tqc_A Pantothenate kinase; bi 94.4 0.017 5.8E-07 52.6 2.4 22 39-60 94-115 (321)
359 2ga8_A Hypothetical 39.9 kDa p 94.3 0.042 1.4E-06 50.5 5.0 25 36-60 23-47 (359)
360 1jbk_A CLPB protein; beta barr 94.3 0.056 1.9E-06 44.2 5.4 24 37-60 43-66 (195)
361 1ixz_A ATP-dependent metallopr 94.3 0.018 6.1E-07 50.3 2.4 21 40-60 52-72 (254)
362 2rhm_A Putative kinase; P-loop 94.3 0.02 6.7E-07 47.5 2.6 22 38-59 6-27 (193)
363 1azs_C GS-alpha; complex (lyas 94.3 0.052 1.8E-06 50.9 5.7 69 138-219 216-297 (402)
364 1yqt_A RNAse L inhibitor; ATP- 94.3 0.024 8.1E-07 55.6 3.4 23 39-61 49-71 (538)
365 3h2y_A GTPase family protein; 94.3 0.022 7.6E-07 52.9 3.1 56 163-222 57-112 (368)
366 3fb4_A Adenylate kinase; psych 94.2 0.025 8.7E-07 47.9 3.1 20 39-58 2-21 (216)
367 2xtz_A Guanine nucleotide-bind 94.2 0.029 9.8E-07 51.8 3.6 70 138-220 182-264 (354)
368 2v54_A DTMP kinase, thymidylat 94.2 0.029 9.8E-07 47.0 3.3 23 38-60 5-27 (204)
369 2plr_A DTMP kinase, probable t 94.1 0.026 8.8E-07 47.5 3.0 22 38-59 5-26 (213)
370 2pez_A Bifunctional 3'-phospho 94.1 0.022 7.4E-07 46.9 2.4 22 39-60 7-28 (179)
371 3ozx_A RNAse L inhibitor; ATP 94.1 0.025 8.6E-07 55.3 3.2 23 39-61 27-49 (538)
372 2c95_A Adenylate kinase 1; tra 94.1 0.026 9E-07 46.9 2.9 23 37-59 9-31 (196)
373 2z0h_A DTMP kinase, thymidylat 94.1 0.027 9.2E-07 46.9 3.0 21 39-59 2-22 (197)
374 1e6c_A Shikimate kinase; phosp 94.1 0.03 1E-06 45.5 3.1 22 38-59 3-24 (173)
375 3dl0_A Adenylate kinase; phosp 94.0 0.029 9.8E-07 47.6 3.1 21 39-59 2-22 (216)
376 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.022 7.5E-07 48.6 2.4 22 39-60 25-46 (235)
377 1in4_A RUVB, holliday junction 94.0 0.025 8.5E-07 51.8 2.8 24 37-60 51-74 (334)
378 4a82_A Cystic fibrosis transme 93.9 0.023 8E-07 56.2 2.6 23 39-61 369-391 (578)
379 2yvu_A Probable adenylyl-sulfa 93.9 0.031 1E-06 46.3 3.0 23 38-60 14-36 (186)
380 3euj_A Chromosome partition pr 93.9 0.023 7.7E-07 54.7 2.4 24 38-61 30-53 (483)
381 3j16_B RLI1P; ribosome recycli 93.9 0.028 9.4E-07 55.8 3.1 23 39-61 105-127 (608)
382 3b5x_A Lipid A export ATP-bind 93.9 0.029 9.8E-07 55.6 3.2 23 39-61 371-393 (582)
383 2pbr_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 46.3 2.9 21 39-59 2-22 (195)
384 3b60_A Lipid A export ATP-bind 93.8 0.027 9.3E-07 55.7 2.9 23 39-61 371-393 (582)
385 1iy2_A ATP-dependent metallopr 93.8 0.025 8.6E-07 50.2 2.4 21 40-60 76-96 (278)
386 1tev_A UMP-CMP kinase; ploop, 93.8 0.033 1.1E-06 46.1 3.0 21 39-59 5-25 (196)
387 3bk7_A ABC transporter ATP-bin 93.8 0.032 1.1E-06 55.4 3.4 23 39-61 119-141 (607)
388 2cdn_A Adenylate kinase; phosp 93.8 0.044 1.5E-06 45.9 3.8 21 39-59 22-42 (201)
389 1cr0_A DNA primase/helicase; R 93.8 0.022 7.5E-07 51.1 2.0 22 39-60 37-58 (296)
390 2pt5_A Shikimate kinase, SK; a 93.8 0.037 1.3E-06 44.8 3.2 21 39-59 2-22 (168)
391 3qf4_A ABC transporter, ATP-bi 93.8 0.027 9.3E-07 55.8 2.8 23 39-61 371-393 (587)
392 3tlx_A Adenylate kinase 2; str 93.8 0.082 2.8E-06 45.9 5.6 22 38-59 30-51 (243)
393 1gtv_A TMK, thymidylate kinase 93.8 0.013 4.3E-07 49.7 0.3 21 39-59 2-22 (214)
394 3qf4_B Uncharacterized ABC tra 93.8 0.026 8.9E-07 56.0 2.6 23 39-61 383-405 (598)
395 2bwj_A Adenylate kinase 5; pho 93.8 0.033 1.1E-06 46.4 2.9 22 38-59 13-34 (199)
396 3nwj_A ATSK2; P loop, shikimat 93.7 0.028 9.7E-07 49.2 2.5 22 38-59 49-70 (250)
397 2yl4_A ATP-binding cassette SU 93.7 0.026 9E-07 56.0 2.5 23 39-61 372-394 (595)
398 2wwf_A Thymidilate kinase, put 93.7 0.049 1.7E-06 45.8 3.9 22 38-59 11-32 (212)
399 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.035 1.2E-06 48.8 2.9 23 37-59 4-26 (260)
400 1zd8_A GTP:AMP phosphotransfer 93.6 0.035 1.2E-06 47.6 2.9 23 37-59 7-29 (227)
401 1nn5_A Similar to deoxythymidy 93.6 0.032 1.1E-06 47.1 2.6 22 38-59 10-31 (215)
402 3ec1_A YQEH GTPase; atnos1, at 93.6 0.025 8.6E-07 52.6 2.0 54 165-222 61-114 (369)
403 3ozx_A RNAse L inhibitor; ATP 93.5 0.035 1.2E-06 54.3 3.1 23 39-61 296-318 (538)
404 1uf9_A TT1252 protein; P-loop, 93.5 0.037 1.3E-06 46.2 2.9 24 37-60 8-31 (203)
405 1tue_A Replication protein E1; 93.5 0.066 2.3E-06 45.2 4.3 21 39-59 60-80 (212)
406 1aky_A Adenylate kinase; ATP:A 93.5 0.044 1.5E-06 46.7 3.3 22 38-59 5-26 (220)
407 2ze6_A Isopentenyl transferase 93.4 0.04 1.4E-06 48.3 3.0 21 39-59 3-23 (253)
408 3l82_B F-box only protein 4; T 93.4 0.094 3.2E-06 44.4 5.1 93 163-257 113-216 (227)
409 2p65_A Hypothetical protein PF 93.4 0.075 2.6E-06 43.3 4.5 24 37-60 43-66 (187)
410 1gvn_B Zeta; postsegregational 93.4 0.035 1.2E-06 49.6 2.7 21 39-59 35-55 (287)
411 2obl_A ESCN; ATPase, hydrolase 93.4 0.03 1E-06 51.6 2.2 23 39-61 73-95 (347)
412 1vht_A Dephospho-COA kinase; s 93.4 0.042 1.4E-06 46.7 3.0 22 38-59 5-26 (218)
413 1sxj_C Activator 1 40 kDa subu 93.4 0.065 2.2E-06 49.0 4.5 25 36-60 45-69 (340)
414 2ce7_A Cell division protein F 93.4 0.061 2.1E-06 51.7 4.4 22 39-60 51-72 (476)
415 1t9h_A YLOQ, probable GTPase E 93.4 0.091 3.1E-06 47.4 5.3 54 168-222 79-133 (307)
416 1zak_A Adenylate kinase; ATP:A 93.4 0.038 1.3E-06 47.2 2.7 22 38-59 6-27 (222)
417 1yqt_A RNAse L inhibitor; ATP- 93.4 0.042 1.4E-06 53.8 3.3 23 39-61 314-336 (538)
418 3ake_A Cytidylate kinase; CMP 93.3 0.049 1.7E-06 45.7 3.3 22 38-59 3-24 (208)
419 1ukz_A Uridylate kinase; trans 93.3 0.056 1.9E-06 45.2 3.6 22 38-59 16-37 (203)
420 1qf9_A UMP/CMP kinase, protein 93.3 0.039 1.3E-06 45.6 2.6 22 38-59 7-28 (194)
421 1svm_A Large T antigen; AAA+ f 93.3 0.034 1.2E-06 51.8 2.4 22 39-60 171-192 (377)
422 1lv7_A FTSH; alpha/beta domain 93.3 0.083 2.8E-06 46.1 4.8 22 39-60 47-68 (257)
423 1e4v_A Adenylate kinase; trans 93.3 0.041 1.4E-06 46.7 2.8 21 39-59 2-22 (214)
424 3qks_A DNA double-strand break 93.2 0.047 1.6E-06 46.1 3.0 22 38-59 24-45 (203)
425 2vli_A Antibiotic resistance p 93.2 0.033 1.1E-06 45.7 2.0 22 38-59 6-27 (183)
426 3bk7_A ABC transporter ATP-bin 93.2 0.046 1.6E-06 54.3 3.3 23 39-61 384-406 (607)
427 2cvh_A DNA repair and recombin 93.2 0.038 1.3E-06 46.8 2.4 22 38-59 21-42 (220)
428 3n70_A Transport activator; si 93.2 0.13 4.3E-06 40.7 5.3 23 38-60 25-47 (145)
429 2xb4_A Adenylate kinase; ATP-b 93.1 0.051 1.7E-06 46.5 3.2 21 39-59 2-22 (223)
430 1n0w_A DNA repair protein RAD5 93.1 0.039 1.3E-06 47.5 2.4 22 39-60 26-47 (243)
431 1qhl_A Protein (cell division 93.1 0.0067 2.3E-07 52.4 -2.5 22 40-61 30-51 (227)
432 1zuh_A Shikimate kinase; alpha 93.0 0.056 1.9E-06 43.8 3.0 23 36-58 6-28 (168)
433 3thx_A DNA mismatch repair pro 93.0 0.68 2.3E-05 48.2 11.7 19 39-57 664-682 (934)
434 1m7g_A Adenylylsulfate kinase; 93.0 0.043 1.5E-06 46.5 2.4 23 38-60 26-48 (211)
435 2dpy_A FLII, flagellum-specifi 92.9 0.039 1.3E-06 52.5 2.2 23 39-61 159-181 (438)
436 3j16_B RLI1P; ribosome recycli 92.9 0.052 1.8E-06 53.9 3.2 22 40-61 381-402 (608)
437 1sxj_E Activator 1 40 kDa subu 92.8 0.045 1.5E-06 50.2 2.5 24 36-59 35-58 (354)
438 1a5t_A Delta prime, HOLB; zinc 92.8 1.6 5.4E-05 39.6 12.9 24 36-59 22-46 (334)
439 1fnn_A CDC6P, cell division co 92.8 0.11 3.9E-06 47.9 5.2 24 37-60 44-67 (389)
440 2grj_A Dephospho-COA kinase; T 92.7 0.061 2.1E-06 45.0 3.0 23 37-59 12-34 (192)
441 4eaq_A DTMP kinase, thymidylat 92.7 0.059 2E-06 46.4 3.0 23 38-60 27-49 (229)
442 3k9g_A PF-32 protein; ssgcid, 92.7 0.8 2.7E-05 39.9 10.4 88 138-247 144-233 (267)
443 1ak2_A Adenylate kinase isoenz 92.6 0.069 2.3E-06 46.0 3.3 22 38-59 17-38 (233)
444 3co5_A Putative two-component 92.6 0.11 3.7E-06 41.0 4.2 23 38-60 28-50 (143)
445 2chg_A Replication factor C sm 92.6 0.099 3.4E-06 43.8 4.2 24 37-60 38-61 (226)
446 3be4_A Adenylate kinase; malar 92.6 0.062 2.1E-06 45.7 2.9 21 38-58 6-26 (217)
447 2p5t_B PEZT; postsegregational 92.5 0.043 1.5E-06 48.0 1.8 23 38-60 33-55 (253)
448 2dhr_A FTSH; AAA+ protein, hex 92.3 0.11 3.9E-06 50.1 4.7 21 40-60 67-87 (499)
449 3qkt_A DNA double-strand break 92.3 0.07 2.4E-06 48.9 3.0 21 38-58 24-44 (339)
450 3bos_A Putative DNA replicatio 92.3 0.081 2.8E-06 45.2 3.3 24 37-60 52-75 (242)
451 1d2n_A N-ethylmaleimide-sensit 92.2 0.17 6E-06 44.4 5.5 25 36-60 63-87 (272)
452 3r20_A Cytidylate kinase; stru 92.2 0.086 2.9E-06 45.5 3.3 21 38-58 10-30 (233)
453 2qz4_A Paraplegin; AAA+, SPG7, 92.1 0.2 6.8E-06 43.5 5.7 22 38-59 40-61 (262)
454 3sr0_A Adenylate kinase; phosp 92.0 0.089 3.1E-06 44.5 3.1 21 39-59 2-22 (206)
455 2ius_A DNA translocase FTSK; n 92.0 0.078 2.7E-06 51.3 3.0 24 36-59 166-189 (512)
456 3auy_A DNA double-strand break 92.0 0.07 2.4E-06 49.5 2.6 22 37-58 25-46 (371)
457 2ph1_A Nucleotide-binding prot 91.9 0.56 1.9E-05 40.9 8.4 67 137-218 127-194 (262)
458 2w58_A DNAI, primosome compone 91.9 0.096 3.3E-06 43.7 3.2 23 38-60 55-77 (202)
459 1e69_A Chromosome segregation 91.9 0.064 2.2E-06 48.8 2.2 22 38-59 25-46 (322)
460 3te6_A Regulatory protein SIR3 91.9 0.15 5E-06 46.3 4.6 25 36-60 44-68 (318)
461 1nlf_A Regulatory protein REPA 91.8 0.062 2.1E-06 47.7 2.0 21 39-59 32-52 (279)
462 2o5v_A DNA replication and rep 91.8 0.071 2.4E-06 49.3 2.4 22 38-59 27-48 (359)
463 1q3t_A Cytidylate kinase; nucl 91.8 0.093 3.2E-06 45.2 3.0 23 37-59 16-38 (236)
464 1ltq_A Polynucleotide kinase; 91.7 0.089 3E-06 47.0 3.0 21 39-59 4-24 (301)
465 1uj2_A Uridine-cytidine kinase 91.7 0.091 3.1E-06 45.8 3.0 22 38-59 23-44 (252)
466 2iw3_A Elongation factor 3A; a 91.6 0.057 1.9E-06 56.3 1.7 23 39-61 701-723 (986)
467 3bfv_A CAPA1, CAPB2, membrane 91.6 0.17 6E-06 44.6 4.7 65 139-219 192-257 (271)
468 4aby_A DNA repair protein RECN 91.6 0.024 8.1E-07 53.5 -1.0 22 39-60 62-83 (415)
469 2qmh_A HPR kinase/phosphorylas 91.5 0.11 3.6E-06 43.7 3.0 23 38-60 35-57 (205)
470 3thx_B DNA mismatch repair pro 91.5 0.38 1.3E-05 49.9 7.8 22 39-60 675-696 (918)
471 1w1w_A Structural maintenance 91.5 0.084 2.9E-06 50.1 2.7 24 38-61 27-50 (430)
472 3g5u_A MCG1178, multidrug resi 91.4 0.09 3.1E-06 56.9 3.1 23 39-61 418-440 (1284)
473 2f6r_A COA synthase, bifunctio 91.3 0.12 4E-06 46.1 3.3 20 39-58 77-96 (281)
474 3umf_A Adenylate kinase; rossm 91.3 0.14 4.7E-06 43.7 3.6 22 38-59 30-51 (217)
475 2iw3_A Elongation factor 3A; a 91.1 0.1 3.5E-06 54.4 3.0 24 39-62 463-486 (986)
476 3exa_A TRNA delta(2)-isopenten 91.1 0.11 3.9E-06 46.8 2.9 23 38-60 4-26 (322)
477 1p5z_B DCK, deoxycytidine kina 90.9 0.1 3.5E-06 45.8 2.4 24 37-60 24-47 (263)
478 3pfi_A Holliday junction ATP-d 90.8 0.31 1.1E-05 44.2 5.7 25 36-60 54-78 (338)
479 3cr8_A Sulfate adenylyltranfer 90.8 0.057 1.9E-06 52.9 0.7 22 39-60 371-392 (552)
480 1njg_A DNA polymerase III subu 90.7 0.15 5E-06 43.3 3.2 22 38-59 46-67 (250)
481 3h4m_A Proteasome-activating n 90.7 0.25 8.4E-06 43.6 4.8 24 37-60 51-74 (285)
482 3cnl_A YLQF, putative uncharac 90.7 0.11 3.7E-06 45.8 2.4 49 167-221 13-61 (262)
483 3cwq_A Para family chromosome 90.7 0.18 6.1E-06 42.6 3.7 66 138-220 67-134 (209)
484 3d3q_A TRNA delta(2)-isopenten 90.7 0.13 4.3E-06 47.1 2.9 22 38-59 8-29 (340)
485 3ux8_A Excinuclease ABC, A sub 90.6 0.1 3.6E-06 52.4 2.5 20 39-58 350-369 (670)
486 4ag6_A VIRB4 ATPase, type IV s 90.6 0.14 4.7E-06 47.9 3.1 25 36-60 34-58 (392)
487 2rcn_A Probable GTPase ENGC; Y 90.5 0.14 4.8E-06 47.2 3.1 50 172-222 127-176 (358)
488 4b4t_K 26S protease regulatory 90.4 0.26 8.9E-06 46.5 4.9 25 36-60 204-229 (428)
489 3la6_A Tyrosine-protein kinase 90.4 0.38 1.3E-05 42.9 5.7 66 139-220 202-268 (286)
490 3b9p_A CG5977-PA, isoform A; A 90.3 0.12 4E-06 46.1 2.3 24 37-60 54-77 (297)
491 3crm_A TRNA delta(2)-isopenten 90.3 0.14 5E-06 46.3 2.9 21 39-59 7-27 (323)
492 3foz_A TRNA delta(2)-isopenten 90.3 0.15 5.1E-06 46.0 2.9 22 38-59 11-32 (316)
493 3zvl_A Bifunctional polynucleo 90.2 0.15 5E-06 48.2 3.0 22 38-59 259-280 (416)
494 1pzn_A RAD51, DNA repair and r 90.2 0.11 3.7E-06 47.9 2.0 23 39-61 133-155 (349)
495 1iqp_A RFCS; clamp loader, ext 90.1 0.4 1.4E-05 42.9 5.8 25 36-60 45-69 (327)
496 3q9l_A Septum site-determining 90.1 0.62 2.1E-05 40.2 6.9 64 139-219 114-186 (260)
497 1a7j_A Phosphoribulokinase; tr 90.1 0.092 3.1E-06 47.0 1.4 23 37-59 5-27 (290)
498 2dr3_A UPF0273 protein PH0284; 90.0 0.15 5E-06 43.8 2.6 21 39-59 25-45 (247)
499 2ocp_A DGK, deoxyguanosine kin 90.0 0.15 5.1E-06 44.0 2.6 21 39-59 4-24 (241)
500 3a8t_A Adenylate isopentenyltr 89.9 0.16 5.5E-06 46.3 2.9 23 38-60 41-63 (339)
No 1
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=1.3e-49 Score=376.25 Aligned_cols=332 Identities=76% Similarity=1.185 Sum_probs=290.2
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecC
Q 017631 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTE 83 (368)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~ 83 (368)
|++|++++|+||+++..+++.+....++.+..++|+|+|||++|||||||+|+|+|.+++|++.+.||++|+++.+.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 89999999999999999998776667788888999999999999999999999999999999999999999999999988
Q ss_pred CCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHH
Q 017631 84 PGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~ 163 (368)
....+++.+...++..+.+++.+...+..+.....|.+.+|+.+.+.+++.++..++++||||||+.+....+++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999998766666777888
Q ss_pred HHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEE
Q 017631 164 EIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243 (368)
Q Consensus 164 ~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v 243 (368)
.+..++..|+.++|++|+++++++.+...+.+..+++.+++.+.|+++|+||+|+.++.....+.+++....+++||+.+
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 89999999999999999999888888877888889999999999999999999999876666777777777888999999
Q ss_pred EeCCccccccCccHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc
Q 017631 244 VNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESELDHL 323 (368)
Q Consensus 244 ~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~~~~~L~~l 323 (368)
+++|+.+++...+...+...|..||..+++|+.+.+++|+..|+++|++.|.+++++++|.+...|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHH
Q 017631 324 GRPVAVDAGAQL 335 (368)
Q Consensus 324 ~~~~~~~~~~~~ 335 (368)
|+++.+++.+++
T Consensus 321 g~~~~~~~~~~~ 332 (360)
T 3t34_A 321 GKPIAHGTDSRV 332 (360)
T ss_dssp ------------
T ss_pred CCCCCCCHHHHH
Confidence 999987665544
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=2.6e-47 Score=383.52 Aligned_cols=347 Identities=52% Similarity=0.833 Sum_probs=301.9
Q ss_pred chhhhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEe
Q 017631 2 ATMESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHK 81 (368)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~ 81 (368)
++|+++++++|+|++.+.+++.. ...++|+|+|||.+|+|||||+|+|+|.+++|++.++||++|+++++.+
T Consensus 24 ~~~~~li~~inkl~d~l~~lg~~--------~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~ 95 (772)
T 3zvr_A 24 RGMEDLIPLVNRLQDAFSAIGQN--------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95 (772)
T ss_dssp -CGGGHHHHHHHHHHHHHTTTCC--------GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCcc--------ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec
Confidence 57999999999999999988762 2348999999999999999999999999999999999999999999988
Q ss_pred cCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhH
Q 017631 82 TEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESV 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~ 161 (368)
.+ ..++.+...++..+.++++++..+...+....|.+.+++.+++.+++.+|+.++++||||||+......++++++
T Consensus 96 ~~---~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di 172 (772)
T 3zvr_A 96 ST---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 172 (772)
T ss_dssp CS---SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH
T ss_pred CC---cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHH
Confidence 76 467788888889999999999999999999999999999999999999999999999999999986655666667
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeE
Q 017631 162 VLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWV 241 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~ 241 (368)
.+.+..++..|+.....+|++|++++.++..++...+++.+++.+.|+++|+||+|+++++.....+..+....+.+||.
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 252 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCC
Confidence 77888999999975444777888888888888876799999999999999999999998766555555544556678999
Q ss_pred EEEeCCccccccCccHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 017631 242 GIVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESELD 321 (368)
Q Consensus 242 ~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~~~~~L~ 321 (368)
.++++|+.......+.......|..||..+++|..+.++.|+..|.+.|++.+..++++++|++...|+.++..++.+++
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele 332 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVD 332 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHH
Confidence 99999998766556666677778889999999988889999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcCC
Q 017631 322 HLGRPVAVDAGAQLYTILELCRSFDRIFKEHLDGGYCI 359 (368)
Q Consensus 322 ~l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~l~g~~~~ 359 (368)
++++++..+..++..+|.+++++|++.+.++++|.|..
T Consensus 333 ~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~ 370 (772)
T 3zvr_A 333 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQ 370 (772)
T ss_dssp HHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99987776666677788999999999999999999953
No 3
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=2.7e-44 Score=338.76 Aligned_cols=339 Identities=52% Similarity=0.839 Sum_probs=293.3
Q ss_pred chhhhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEe
Q 017631 2 ATMESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHK 81 (368)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~ 81 (368)
++|++|.+++++|++.+..++.. ....+|+|+|||++|||||||+|+|+|.+++|++.+.||++|+++++.+
T Consensus 4 ~~~~~l~~~~~~l~d~l~~~g~~--------~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~ 75 (353)
T 2x2e_A 4 FSMEDLIPLVNRLQDAFSAIGQN--------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75 (353)
T ss_dssp --CCSCHHHHHHHHHHHHTTTCG--------GGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCC--------CCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEc
Confidence 57899999999999999887652 1247899999999999999999999999999999999999999999887
Q ss_pred cCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhH
Q 017631 82 TEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESV 161 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~ 161 (368)
.+ ..++.+...++..+++++.+...++..+..+.|...+++...+.+++.+++..+++||||||+......++++.+
T Consensus 76 ~~---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~ 152 (353)
T 2x2e_A 76 AT---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 152 (353)
T ss_dssp CS---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTH
T ss_pred CC---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhH
Confidence 65 467778888888899999999999988888888888999999999999999899999999999886665566667
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeE
Q 017631 162 VLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWV 241 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~ 241 (368)
.+.+..++..|+..++.+||+|++++.++..+++..+++.+++.+.|+++|+||+|+.++.....+.+++....+.+||.
T Consensus 153 ~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 232 (353)
T 2x2e_A 153 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232 (353)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCce
Confidence 77889999999999998999999998888888877789999999999999999999997655455666665666778999
Q ss_pred EEEeCCccccccCccHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 017631 242 GIVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESELD 321 (368)
Q Consensus 242 ~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~~~~~L~ 321 (368)
.++++|+.......+.......|.+||..++.|+....++|+..|++.|++.+..++++++|++...++..+..++.+++
T Consensus 233 ~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~ 312 (353)
T 2x2e_A 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312 (353)
T ss_dssp ECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998666556666667778999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCHH--HHHHHHHHHHHHHHHHHHH
Q 017631 322 HLGRPVAVDAG--AQLYTILELCRSFDRIFKE 351 (368)
Q Consensus 322 ~l~~~~~~~~~--~~~~~l~~~~~~f~~~~~~ 351 (368)
.+++++..+.. .++.++.+++..|++.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 313 EYKNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99877655432 3458899999999887653
No 4
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.1e-40 Score=331.70 Aligned_cols=323 Identities=36% Similarity=0.567 Sum_probs=265.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCC-CCcccChHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLP-KKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 113 (368)
.++|+|+|||++|||||||+++|+|. ..|++.|.||..+..+.+.+......+...+...+ ...+.+...+.+.+...
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 38999999999999999999999998 46988999999999988766543322222221111 23456777888877777
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
.....+...+++.+.+.+.+.++..|+++|+|+||+......+.+......+..++..|+.+...+++++++++.+..++
T Consensus 122 ~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~ 201 (608)
T 3szr_A 122 QNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT 201 (608)
T ss_dssp HHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC
T ss_pred HHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH
Confidence 67777778889999999999999999999999999988766677777888999999999998888999999988898899
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcc--hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHHHHhHhcCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGT--NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRREHEFFATS 271 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~--~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~ 271 (368)
...++++.+++.+.++|+|+||+|++++++ .+.+++.++..++.+||+++.++++.++....+..++...|..||..+
T Consensus 202 ~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~~~~~~~~~~~~~E~~fF~~~ 281 (608)
T 3szr_A 202 EALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENH 281 (608)
T ss_dssp HHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCTTTCCCHHHHTTTHHHHTTTC
T ss_pred HHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhcccCCCHHHHHHHHHHHHccC
Confidence 999999999999999999999999997765 356777888889999999999999998888888888888899999999
Q ss_pred CCCCchhh--ccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 017631 272 PDYGHLAT--KMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESELDHLGRPVAVDAGAQLYTILELCRSFDRIF 349 (368)
Q Consensus 272 ~~~~~~~~--~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~~~~~L~~l~~~~~~~~~~~~~~l~~~~~~f~~~~ 349 (368)
+||+.+.+ ++|++.|+++|++.|.+|+++++|.+...|+..+.+++++|..||+++.++.++++.+|.+++..|++.+
T Consensus 282 ~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~ 361 (608)
T 3szr_A 282 PYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDI 361 (608)
T ss_dssp TTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99987654 8999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHhhcCCcC
Q 017631 350 KEHLDGGYC 358 (368)
Q Consensus 350 ~~~l~g~~~ 358 (368)
.++++|.+.
T Consensus 362 ~~~~~g~~~ 370 (608)
T 3szr_A 362 TALMQGEET 370 (608)
T ss_dssp HHHHSSCCC
T ss_pred HHHhCCCCc
Confidence 999999884
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=1.7e-38 Score=294.80 Aligned_cols=310 Identities=51% Similarity=0.815 Sum_probs=231.8
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCC
Q 017631 5 ESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEP 84 (368)
Q Consensus 5 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~ 84 (368)
|+|++++++|++.+..++.. ...+|+|+|+|.+|||||||+|+|+|.+++|++.+.||++|+++++.+.+.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~---------~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~ 71 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD---------PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPI 71 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC---------TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCC
T ss_pred CchHHHHHHHHHHHHHcCCC---------CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCC
Confidence 46889999999998776652 237899999999999999999999999999999999999999988877532
Q ss_pred -----CcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCCh
Q 017631 85 -----GLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPE 159 (368)
Q Consensus 85 -----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~ 159 (368)
....|..+...++....++..+.+.+......+.|...+++.+++.+++.++...+++||||||+......+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~ 151 (315)
T 1jwy_B 72 ADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPT 151 (315)
T ss_dssp CTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------
T ss_pred cccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCch
Confidence 346677888888888999999999999888888887889999999999999999999999999997644333344
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCC
Q 017631 160 SVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHP 239 (368)
Q Consensus 160 ~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g 239 (368)
.+.+.+..++..|+..+|++++++++++.++...+...+++.+...+.|+++|+||+|+.++.....+.+......+..+
T Consensus 152 ~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231 (315)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCC
Confidence 46677788999999999998888887676666555556788888889999999999999976554555555434455579
Q ss_pred eEEEEeCCccccccCccHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 017631 240 WVGIVNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRSIDELESE 319 (368)
Q Consensus 240 ~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~l~~~~~~ 319 (368)
|+++++.|+.+.+.+.........+..+|...++|.....+.|...|.+.+++.+..++++++|++...++..+.+++++
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~ 311 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGE 311 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999987655555544455566788887778877788999999999999999999999999999999999999999
Q ss_pred HHHc
Q 017631 320 LDHL 323 (368)
Q Consensus 320 L~~l 323 (368)
|.+|
T Consensus 312 l~~~ 315 (315)
T 1jwy_B 312 LSTY 315 (315)
T ss_dssp ----
T ss_pred HHhC
Confidence 9765
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=2e-36 Score=278.64 Aligned_cols=298 Identities=57% Similarity=0.931 Sum_probs=248.5
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecC
Q 017631 4 MESLIGLVNRIQRACTVLGDYGGDSALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTE 83 (368)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~ 83 (368)
|++|.+++++|++.+..++... ...+|+|+|+|.+|||||||+|+|+|.++.|.+.+.||++|+++++.+..
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~ 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCT--------TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHhcCCCC--------CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC
Confidence 7899999999999988766521 23689999999999999999999999999999999999999999887765
Q ss_pred CCcccceeeecCCCCcccChHHHHHHHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHH
Q 017631 84 PGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVL 163 (368)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~ 163 (368)
..+..+....+..+++++.+...+......+.|...+++.+.+.+++.++...+++||||||+......++++...+
T Consensus 73 ---~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~ 149 (299)
T 2aka_B 73 ---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEF 149 (299)
T ss_dssp ---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHH
T ss_pred ---cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHH
Confidence 35666777777788899988888887777787877889999999999999889999999999987554334455666
Q ss_pred HHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEE
Q 017631 164 EIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGI 243 (368)
Q Consensus 164 ~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v 243 (368)
.+..++..|+..++.+|++|.+++.++..++...+++.+++.+.|+++|+||+|+.++.....+.+++....+..||..+
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 77889999999999888888888877777776678888888899999999999998765544555554344555689899
Q ss_pred EeCCccccccCccHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 017631 244 VNRSQADINKNVDMIAARRREHEFFATSPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLINRS 312 (368)
Q Consensus 244 ~~~s~~~~~~~~~~~~~~~~E~~~f~~~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i~~~ 312 (368)
++.|+.......+.......|.+||+..+.|+....++|+..|.+.+++.+..++++++|++...++.+
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 999997655555566666778899988888999889999999999999999999999999999998865
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.84 E-value=7.7e-20 Score=185.51 Aligned_cols=172 Identities=17% Similarity=0.269 Sum_probs=110.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHH---HH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEI---QE 112 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~ 112 (368)
.-++|+|+|.+|+|||||+|+|+|.+++|++..++|.+++.+.+... ......+.........++..+...+ ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~---~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPE---KKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSS---CEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCC---CeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 56789999999999999999999999999999999999998875211 1111111111111112222222110 00
Q ss_pred HHhhhhCCCCCCCCCceEEEEecCCC---CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc
Q 017631 113 ETDRVTGKSKQISPVPIHLSIYSPNV---VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD 189 (368)
Q Consensus 113 ~~~~~~~~~~~~s~~~i~i~i~~~~~---~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~ 189 (368)
....+.............+++..|.. .+++||||||+.+.... ...+..|++++|++++ |.+++..
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~----------~~~~~~~i~~aD~vL~-Vvda~~~ 213 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEAR----------NELSLGYVNNCHAILF-VMRASQP 213 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTC----------HHHHTHHHHSSSEEEE-EEETTST
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhH----------HHHHHHHHHhCCEEEE-EEeCCCc
Confidence 11122223334455667777777753 48999999999864322 5678899999996665 4555555
Q ss_pred ccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 190 LATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
....+...+...+...+.|+++|+||+|+..+
T Consensus 214 ~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 214 CTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred cchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 54444433444566667899999999999754
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=3.4e-20 Score=170.84 Aligned_cols=212 Identities=17% Similarity=0.250 Sum_probs=123.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
....|+++|.+|||||||+|+|+|.++..++..+ +|+......
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~------------------------------------ 52 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGV------------------------------------ 52 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEE------------------------------------
Confidence 3456999999999999999999999874333322 222221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.......+++||||||+.+... ...+.+.+...+..++..+|++++|++. +......+
T Consensus 53 ------------------~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~-~~~~~~~~ 110 (308)
T 3iev_A 53 ------------------KNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDA-TEGWRPRD 110 (308)
T ss_dssp ------------------EEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEET-TTBSCHHH
T ss_pred ------------------EecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeC-CCCCCchh
Confidence 1122145799999999986431 1336677788889999999977766544 44333333
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccC--CCCeEEEEeCCccccccCccHHHHHHHHHhHhcCCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPL--QHPWVGIVNRSQADINKNVDMIAARRREHEFFATSP 272 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~--~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~~f~~~~ 272 (368)
...++..+...+.|+++|+||+|+..+.......+..-...+ ...++.++..++.++..+++.+.....+...+....
T Consensus 111 ~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 111 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp HHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred HHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence 332256666667999999999999843333222222101111 123444444444444444333333332222222222
Q ss_pred CCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHH
Q 017631 273 DYGHLATKMGSEYLAKLLSKHLESIIKSRIPGITSL 308 (368)
Q Consensus 273 ~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~ 308 (368)
..++...+. ...+.+++.+...+.+++|+....
T Consensus 191 ~~td~~~~~---~~~e~irek~~~~~~~eiP~~~~v 223 (308)
T 3iev_A 191 MITDLPLRL---LAAEIVREKAMMLTREEVPTSIAV 223 (308)
T ss_dssp CCBCCCHHH---HHHHHHHHHHHHTCCTTHHHHCEE
T ss_pred cccCCCHHH---HHHHHHHHHHHhhhhhhcCCeeEE
Confidence 222223333 566777888888888899986544
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=1.5e-19 Score=165.80 Aligned_cols=204 Identities=18% Similarity=0.181 Sum_probs=121.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+.|+++|++|+|||||+|+|+|.++..++..+ +|+..+..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~------------------------------------- 48 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRG------------------------------------- 48 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEE-------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEE-------------------------------------
Confidence 3467999999999999999999999874433322 22222110
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+......++.||||||+.+... .+.+.+...+..|++.+|++++|++. +......+
T Consensus 49 ------------------i~~~~~~~l~l~DTpG~~~~~~-----~l~~~~~~~~~~~l~~ad~il~VvD~-~~~~~~~~ 104 (301)
T 1wf3_A 49 ------------------ILTEGRRQIVFVDTPGLHKPMD-----ALGEFMDQEVYEALADVNAVVWVVDL-RHPPTPED 104 (301)
T ss_dssp ------------------EEEETTEEEEEEECCCCCCCCS-----HHHHHHHHHHHHHTSSCSEEEEEEET-TSCCCHHH
T ss_pred ------------------EEEeCCcEEEEecCccccchhh-----HHHHHHHHHHHHHHhcCCEEEEEEEC-CCCCChHH
Confidence 1122345799999999976322 35666778889999999977766554 43333332
Q ss_pred HHHHHHhhCCC--CCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCcc---ccccCccHHHHHHHHHhHhc
Q 017631 195 AVKLSREVDPT--GERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQA---DINKNVDMIAARRREHEFFA 269 (368)
Q Consensus 195 ~~~l~~~~~~~--~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~---~~~~~~~~~~~~~~E~~~f~ 269 (368)
..+...+... +.|+++|+||+|+......+.+.++. . .++..+++.|+. +++.+++.+.....+..+++
T Consensus 105 -~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~--~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y 178 (301)
T 1wf3_A 105 -ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHE--L---LPEAEPRMLSALDERQVAELKADLLALMPEGPFFY 178 (301)
T ss_dssp -HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHH--T---STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSS
T ss_pred -HHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHH--h---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCC
Confidence 2244444443 68999999999998653212333321 1 344456677764 33333332222222222322
Q ss_pred CCCCC-CchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 017631 270 TSPDY-GHLATKMGSEYLAKLLSKHLESIIKSRIPGITSLI 309 (368)
Q Consensus 270 ~~~~~-~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~~~i 309 (368)
..... ++.++++ ...+.+++.+...+.+++|+.....
T Consensus 179 ~~~~~~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~~v~ 216 (301)
T 1wf3_A 179 PEDYAKSDQTFGE---WVAEILREEAMKRLWHEVPYAVATK 216 (301)
T ss_dssp CTTCCSBSSCHHH---HHHHHHHHHHHHTCCTTHHHHCEEE
T ss_pred CcccccCCCCHHH---HHHHHHHHHHHHHhhcccCceEEEE
Confidence 22223 3333333 3566677778888888888866433
No 10
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=2.3e-18 Score=158.03 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=112.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+.|+++|++|+|||||+|+|+|.++.+++..+ +|+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~--------------------------------------- 48 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV--------------------------------------- 48 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEE---------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEE---------------------------------------
Confidence 468999999999999999999998864333222 2222110
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCc-ccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGIT-KVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+...+..+++++||||+. ... ..+.+.+...+..++..+|+++++++. .. +...+
T Consensus 49 ----------------gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~vl~Vvd~-~~-~~~~~ 105 (301)
T 1ega_A 49 ----------------GIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVELVIFVVEG-TR-WTPDD 105 (301)
T ss_dssp ----------------EEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEEEEEEEET-TC-CCHHH
T ss_pred ----------------EEEEECCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCEEEEEEeC-CC-CCHHH
Confidence 0122234578999999996 211 112222333456678899976655544 33 44433
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHH----HHhHhcC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRR----EHEFFAT 270 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~----E~~~f~~ 270 (368)
..+++.+...+.|.++|+||+|+........+.+. .....+|+..+++.|+... .+++.+..... +.++++.
T Consensus 106 -~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~--~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 106 -EMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ--FLASQMNFLDIVPISAETG-LNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp -HHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHH--HHHTTSCCSEEEECCTTTT-TTHHHHHHHHHTTCCBCCCSSC
T ss_pred -HHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHH--HHHHhcCcCceEEEECCCC-CCHHHHHHHHHHhCCcCCCCCC
Confidence 34556666667999999999999863233333332 1112245545667776432 23333332222 2222222
Q ss_pred CCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHH
Q 017631 271 SPDYGHLATKMGSEYLAKLLSKHLESIIKSRIPGIT 306 (368)
Q Consensus 271 ~~~~~~~~~~~g~~~L~~~L~~~l~~~i~~~lp~~~ 306 (368)
....++.+++. ...+.+++.+.+.+.+++|+..
T Consensus 182 ~~~~~d~~~~~---~~~e~~re~l~~~l~~e~p~~~ 214 (301)
T 1ega_A 182 EDYITDRSQRF---MASEIIREKLMRFLGAELPYSV 214 (301)
T ss_dssp TTCCSCCSHHH---HHHHHHHHHHHHHHGGGCCTTE
T ss_pred ccccCCCCHHH---HHHHHHHHHHHHHhCCCCCeEE
Confidence 22233333333 3555667777777777777654
No 11
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.65 E-value=4e-16 Score=136.51 Aligned_cols=128 Identities=22% Similarity=0.286 Sum_probs=82.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC-ccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDF-LPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~-~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
..|+|+|+|.+|+|||||+|+|+|... ...+..+ +|....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~-------------------------------------- 69 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN-------------------------------------- 69 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--------------------------------------
Confidence 578999999999999999999999872 1222211 122111
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcC---CCeEEEEEeeCCCcc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEK---PNCLILAITPANQDL 190 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iil~v~~~~~~~ 190 (368)
...+.......+.||||||+...... ....+.+..++..|+.. +|.+++++ ++....
T Consensus 70 ----------------~~~~~~~~~~~~~l~DtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~vi~v~-d~~~~~ 129 (223)
T 4dhe_A 70 ----------------YFSVGPAAEPVAHLVDLPGYGYAEVP---GAAKAHWEQLLSSYLQTRPQLCGMILMM-DARRPL 129 (223)
T ss_dssp ----------------EEEESCTTSCSEEEEECCCCCSSCCC---STHHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCC
T ss_pred ----------------EEEecCCCCCcEEEEcCCCCCcccCC---hhhHHHHHHHHHHHHhcCcCcCEEEEEE-eCCCCC
Confidence 11122234468999999998764322 22456667777788776 66565554 544443
Q ss_pred cchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 191 ATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.. ....++..+...+.|+++|+||+|+.+..
T Consensus 130 ~~-~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 130 TE-LDRRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp CH-HHHHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred CH-HHHHHHHHHHhcCCCEEEEEeccccCChh
Confidence 33 33345566666678999999999998653
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=1.5e-16 Score=142.54 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=79.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.|+|+++|++|+|||||+|+|+|..+ .++..+ +|.....-
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~-------------------------------------- 41 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTG-------------------------------------- 41 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEE--------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEE--------------------------------------
Confidence 48999999999999999999999874 332221 11111100
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~~ 193 (368)
.+.. +...+.||||||+.+....++..+.. +.+.+.|+ .++|++|+|++..+ ..
T Consensus 42 ----------------~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~vi~VvDas~----~~ 97 (256)
T 3iby_A 42 ----------------EFLL-GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCIINVIDACH----LE 97 (256)
T ss_dssp ----------------EEEE-TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEEEEEEEGGG----HH
T ss_pred ----------------EEEE-CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEEEEEeeCCC----ch
Confidence 1111 22378999999998754321111111 45667787 89998877665543 23
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
....+...+...+.|+++|+||+|+...
T Consensus 98 ~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 98 RHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 4445677777789999999999999754
No 13
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.63 E-value=3.2e-16 Score=140.78 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc--cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI--VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~--~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
..+.|+|+|++|||||||+|+|+|...++.+..+ +|+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~------------------------------------ 64 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKS------------------------------------ 64 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEE------------------------------------
Confidence 4578999999999999999999998866654433 23322111
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
........+.||||||+.+.... .+...+.+...+..+++.+|++++|++... +...
T Consensus 65 -------------------~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~ 121 (260)
T 2xtp_A 65 -------------------QGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQ 121 (260)
T ss_dssp -------------------EEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHH
T ss_pred -------------------EEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHH
Confidence 11123347999999999875432 232334445566678899998877665542 3332
Q ss_pred H--HHHHHHhhCCC--CCceEEeec-cCcccC
Q 017631 194 D--AVKLSREVDPT--GERTFGVLT-KLDLMD 220 (368)
Q Consensus 194 ~--~~~l~~~~~~~--~~~~i~Vlt-K~D~~~ 220 (368)
. ....+..+... ..|.++|+| |+|+..
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 2 22233333211 467888888 999984
No 14
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.62 E-value=2.3e-15 Score=128.33 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|+|+|+|++|+|||||+|+|++..+.+......+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 63 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF-------------------------------------- 63 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE--------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE--------------------------------------
Confidence 568999999999999999999999875333222211111000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCC---CeEEEEEeeCCCcccc
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKP---NCLILAITPANQDLAT 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~iil~v~~~~~~~~~ 192 (368)
......+.+|||||+..... +....+.+..+...|+..+ |++++++ ++......
T Consensus 64 -------------------~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~-d~~~~~~~ 120 (195)
T 3pqc_A 64 -------------------YLVNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLV-DGRIPPQD 120 (195)
T ss_dssp -------------------EEETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCCCH
T ss_pred -------------------EEECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEe-cCCCCCCH
Confidence 00123688999999765322 2223455667777777765 7555554 44433323
Q ss_pred hHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 193 SDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 193 ~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
. ...+...+...+.|+++|+||+|+.++.
T Consensus 121 ~-~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 121 S-DLMMVEWMKSLNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp H-HHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred H-HHHHHHHHHHcCCCEEEEEEChhcCChH
Confidence 2 2334555555579999999999998653
No 15
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.61 E-value=3.6e-15 Score=131.10 Aligned_cols=134 Identities=16% Similarity=0.261 Sum_probs=78.1
Q ss_pred CCCcccCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHH
Q 017631 29 ALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRK 108 (368)
Q Consensus 29 ~~~~~~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (368)
.+|......++|+|+|.+|+|||||+|+|++..+.+.....+|+...
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~--------------------------------- 67 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLY--------------------------------- 67 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEE---------------------------------
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeee---------------------------------
Confidence 45655556789999999999999999999998752111111111110
Q ss_pred HHHHHHhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC
Q 017631 109 EIQEETDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ 188 (368)
Q Consensus 109 ~i~~~~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~ 188 (368)
+.........+.||||||.......... ... ......+...+|++|+|++..+.
T Consensus 68 ----------------------~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~--~~~~~~~~~~~d~~i~v~d~~~~ 121 (228)
T 2qu8_A 68 ----------------------VGHFDHKLNKYQIIDTPGLLDRAFENRN--TIE--MTTITALAHINGVILFIIDISEQ 121 (228)
T ss_dssp ----------------------EEEEEETTEEEEEEECTTTTTSCGGGCC--HHH--HHHHHHHHTSSEEEEEEEETTCT
T ss_pred ----------------------eeeeecCCCeEEEEECCCCcCcccchhh--hHH--HHHHHHhhccccEEEEEEecccc
Confidence 0011112347899999999653321111 000 12234567888977766554332
Q ss_pred c-ccchHHHHHHHhhCCC--CCceEEeeccCcccCC
Q 017631 189 D-LATSDAVKLSREVDPT--GERTFGVLTKLDLMDK 221 (368)
Q Consensus 189 ~-~~~~~~~~l~~~~~~~--~~~~i~VltK~D~~~~ 221 (368)
. +....+..++..+... +.|+++|+||+|+.+.
T Consensus 122 ~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 122 CGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp TSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred cCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 1 2223334455555544 7899999999999854
No 16
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.60 E-value=3.3e-15 Score=135.22 Aligned_cols=137 Identities=19% Similarity=0.292 Sum_probs=79.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|||.+|+|||||+|+|++.+.++.+...++...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 5799999999999999999999887655431111000
Q ss_pred hCCCCCCCCCceEEEEecCC-CCCeEEEeCCCCcccCCC-CCChhHHHHHHHHHHHhhcC-------------CCeEEEE
Q 017631 118 TGKSKQISPVPIHLSIYSPN-VVNLTLIDLPGITKVAVE-GQPESVVLEIETMVRSYIEK-------------PNCLILA 182 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~-~~~l~liDtPG~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~d~iil~ 182 (368)
..++..+.....+...+ ...++||||||+.+.... ..-..+...+......|+.. +|+++++
T Consensus 46 ---~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~ 122 (274)
T 3t5d_A 46 ---KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF 122 (274)
T ss_dssp ------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEE
T ss_pred ---CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEE
Confidence 00001111111122111 137899999999664332 11222333344444555553 7788888
Q ss_pred EeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 183 ITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 183 v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+.++.......+ ..+++.+.. +.|+++|+||+|+..+.
T Consensus 123 i~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 123 IAPSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp ECSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred ecCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 877665554444 447777776 89999999999998653
No 17
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=127.00 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=90.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+.+......+... ...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~------------------------------------- 56 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIR------------------------------------- 56 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE-EEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE-EEE-------------------------------------
Confidence 457899999999999999999998875322211111111 000
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc--cc
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL--AT 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~--~~ 192 (368)
.+... ....+.|+||||.... ..+...|++.+|++|+|++..+... ..
T Consensus 57 ----------------~~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 107 (196)
T 3tkl_A 57 ----------------TIELDGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNV 107 (196)
T ss_dssp ----------------EEEETTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTH
T ss_pred ----------------EEEECCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHH
Confidence 01111 1236889999996442 2346778999998877665443211 11
Q ss_pred hHHHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 193 SDAVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 193 ~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
..+...+......+.|+++|+||+|+.+...................++.+...+..++.+.+..+..
T Consensus 108 ~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 108 KQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 22333445555567899999999999855321111111011122346666666665555544444433
No 18
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.59 E-value=1.1e-14 Score=136.74 Aligned_cols=129 Identities=24% Similarity=0.329 Sum_probs=76.1
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 34 WEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 34 ~~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
...+|.|+++|.+|||||||+|+|+|..+...+...+|+.++.-.
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~----------------------------------- 220 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYA----------------------------------- 220 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEE-----------------------------------
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEE-----------------------------------
Confidence 345788999999999999999999998752222223333332111
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc--cc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD--LA 191 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~--~~ 191 (368)
+..++ ..+.++||||+.... +....+.+... ..++..+|.++++++.++.. ..
T Consensus 221 -------------------i~~~g-~~v~l~DT~G~i~~l----p~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~ 275 (364)
T 2qtf_A 221 -------------------IPINN-RKIMLVDTVGFIRGI----PPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLI 275 (364)
T ss_dssp -------------------EEETT-EEEEEEECCCBCSSC----CGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHH
T ss_pred -------------------EEECC-EEEEEEeCCCchhcC----CHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHH
Confidence 22222 468899999986522 23344555443 55788999777665543322 11
Q ss_pred c--hHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 192 T--SDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 192 ~--~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
. ..+..++..+...+.|+++|+||+|+.+..
T Consensus 276 ~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 276 ETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 1 112345566655678999999999998653
No 19
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.59 E-value=3.6e-15 Score=123.10 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=74.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
+|+|+++|++|+|||||+|+|.+..+.+.+..+ +|...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 478999999999999999999988742222111 11111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
....+.. ....+.++||||...... ....+......++..+|+++++++..+ ......
T Consensus 40 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~- 97 (161)
T 2dyk_A 40 -------------KEGVVET-DRGRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVDGRA-ELTQAD- 97 (161)
T ss_dssp -------------EEEEEEE-TTEEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEESSS-CCCHHH-
T ss_pred -------------eEEEEEe-CCceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEECCC-cccHhH-
Confidence 0111111 223789999999876331 223345667788999998877665543 232222
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
..+...+...+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 124 (161)
T 2dyk_A 98 YEVAEYLRRKGKPVILVATKVDDPKHE 124 (161)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCSGGGG
T ss_pred HHHHHHHHhcCCCEEEEEECcccccch
Confidence 123333333468999999999998653
No 20
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.59 E-value=6.1e-15 Score=145.63 Aligned_cols=167 Identities=16% Similarity=0.223 Sum_probs=94.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCc--cccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFL--PRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~--p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
..|.|+|+|.+|+|||||+|+|+|.++. +++..++|...+.+.. ...+ ... ++.... .+ ....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~--~~~~-----~i~--~g~~l~-----~~-~~~~ 128 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMH--GETE-----GTV--PGNALV-----VD-PEKP 128 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEEC--CSSS-----EEE--CCC---------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEE--CCcc-----ccc--CCceee-----ec-Cccc
Confidence 5799999999999999999999999874 5666676655444332 1100 000 000000 00 0000
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHH--HHHHHHHhhcCCCeEEEEEeeCCCccc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLE--IETMVRSYIEKPNCLILAITPANQDLA 191 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~iil~v~~~~~~~~ 191 (368)
...+...+..+....+++.+..+....++||||||+.+..... +.+. +..++..++..+|++++|++....+..
T Consensus 129 ~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~----~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~ 204 (550)
T 2qpt_A 129 FRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQR----VSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS 204 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC
T ss_pred HHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchhH----HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC
Confidence 0111111223333444444433333579999999997632110 1111 356678889999977766655432333
Q ss_pred chHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 192 TSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.....++..+...+.++++|+||+|+.++.
T Consensus 205 -~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 205 -DEFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -HHHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred -HHHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 333456777777778999999999998653
No 21
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=1.4e-15 Score=146.85 Aligned_cols=162 Identities=14% Similarity=0.250 Sum_probs=90.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+|.|++||++|+|||||+|+|+|.+.. .+...|.+
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~-----~v~~~~g~---------------------------------------- 35 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKA-----IVEDEEGV---------------------------------------- 35 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-----eecCCCCC----------------------------------------
Confidence 489999999999999999999998741 11112211
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
+.+...-.+. .....+.||||||+...... ...+.+...+..|++++|++++|+ ++.......+ .
T Consensus 36 --------T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~----~~~~~~~~~~~~~~~~ad~il~V~-D~~~~~~~~d-~ 100 (439)
T 1mky_A 36 --------TRDPVQDTVE-WYGKTFKLVDTCGVFDNPQD----IISQKMKEVTLNMIREADLVLFVV-DGKRGITKED-E 100 (439)
T ss_dssp ----------CCSEEEEE-ETTEEEEEEECTTTTSSGGG----CCCHHHHHHHHHHHTTCSEEEEEE-ETTTCCCHHH-H
T ss_pred --------ccceeeEEEE-ECCeEEEEEECCCccccccc----hHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHH-H
Confidence 0111111121 12346899999998753211 133456778889999999777665 4444333322 2
Q ss_pred HHHHhhCCCCCceEEeeccCcccCC-cchH-HHhhhCCCccCCC-CeEEEEeCCccccccCccHHHHHHH
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDK-GTNA-LDILEGRSYPLQH-PWVGIVNRSQADINKNVDMIAARRR 263 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~-~~~~-~~~~~~~~~~~~~-g~~~v~~~s~~~~~~~~~~~~~~~~ 263 (368)
.+...+...+.|+++|+||+|+... .... .++ ..++. .++.++...+.+++++++.+.....
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 2444444457899999999998643 1111 222 12233 3455655555665555555544443
No 22
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=131.63 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc--ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG--IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~--~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
..++|+|+|.+|+|||||+|+|+|..+++.+.. .+|..+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 457899999999999999999999987544432 2333332111
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
+ ......+.||||||+.+.... .....+.+...+..+.+.+|++++|+.....+....
T Consensus 73 -------------------~-~~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 130 (239)
T 3lxx_A 73 -------------------S-SWKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEH 130 (239)
T ss_dssp -------------------E-EETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHH
T ss_pred -------------------E-EeCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHH
Confidence 1 112347899999999875432 333455666666777789997776664432111111
Q ss_pred HHHHHHH-hhC-CCCCceEEeeccCcccCC
Q 017631 194 DAVKLSR-EVD-PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~-~~~-~~~~~~i~VltK~D~~~~ 221 (368)
.+...+. ... ....|+++|+||+|+...
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 2222221 111 123589999999999854
No 23
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.59 E-value=2e-15 Score=134.49 Aligned_cols=127 Identities=21% Similarity=0.190 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc--cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI--VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~--~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
.-.+|++||.+|+|||||+|+|+|.+++..+..+ +|+.+.....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~---------------------------------- 65 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSR---------------------------------- 65 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEE----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEE----------------------------------
Confidence 3467999999999999999999999876554332 4443322111
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
......++||||||+.+..... .+.....+......+.+.+|++++|+.. +. +...
T Consensus 66 ---------------------~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~-~~-~~~~ 121 (247)
T 3lxw_A 66 ---------------------RWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQL-GR-FTAQ 121 (247)
T ss_dssp ---------------------EETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEET-TB-CCHH
T ss_pred ---------------------EECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeC-CC-CCHH
Confidence 1223478999999997533210 0111122222223334899977766654 32 3222
Q ss_pred H--HHHHHHhhC-C--CCCceEEeeccCcccC
Q 017631 194 D--AVKLSREVD-P--TGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~--~~~l~~~~~-~--~~~~~i~VltK~D~~~ 220 (368)
+ ..+.+..+. + .+.++++|.||.|+..
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 122 DQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 2 223333321 1 2578999999999975
No 24
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.59 E-value=1.1e-14 Score=124.27 Aligned_cols=124 Identities=26% Similarity=0.348 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCcccc-Ccc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRG-SGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~-~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
..++|+|+|.+|+|||||+|+|++..+.+.. ..+ +|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 62 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--------------------------------------- 62 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE---------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE---------------------------------------
Confidence 5689999999999999999999998742211 100 01000
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCC---CeEEEEEeeCCCcc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKP---NCLILAITPANQDL 190 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~iil~v~~~~~~~ 190 (368)
....+ ...+.+|||||+..... +....+.+..+...|+..+ |++++|+ ++....
T Consensus 63 ---------------~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-d~~~~~ 119 (195)
T 1svi_A 63 ---------------NFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIV-DLRHAP 119 (195)
T ss_dssp ---------------EEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCC
T ss_pred ---------------EEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEE-ECCCCC
Confidence 00011 12799999999865432 2333556677778888766 8666555 444433
Q ss_pred cchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 191 ATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.... ..+.+.+...+.|+++|+||+|+.++.
T Consensus 120 ~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 120 SNDD-VQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp CHHH-HHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred CHHH-HHHHHHHHHcCCCEEEEEECcccCChH
Confidence 3332 334445544678999999999998654
No 25
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.58 E-value=4.5e-15 Score=123.01 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=70.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|++|+|||||+|+|++..+.+.. .+.+.......
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~--------------------------------------- 43 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKY-DPTIEDFYRKE--------------------------------------- 43 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccC-CCCcceeEEEE---------------------------------------
Confidence 47999999999999999999987752221 11111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD--- 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~--- 194 (368)
+.+ ......+.++||||.... ..+...|+..+|.++++++..+. .....
T Consensus 44 -------------~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~ 95 (167)
T 1kao_A 44 -------------IEV-DSSPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFILVYSLVNQ-QSFQDIKP 95 (167)
T ss_dssp -------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCH-HHHHHHHH
T ss_pred -------------EEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEeCCCH-HHHHHHHH
Confidence 001 111235889999996431 45567788999987766654432 11111
Q ss_pred HH-HHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AV-KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~-~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+. .+.......+.|+++|+||+|+.+.
T Consensus 96 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 96 MRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 11 2333344457999999999999754
No 26
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.58 E-value=7.2e-15 Score=125.47 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+......+ .. ....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~--~~~~----------------------------------- 65 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-VE--FSTR----------------------------------- 65 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS-EE--EEEE-----------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc-ee--EEEE-----------------------------------
Confidence 346899999999999999999999876322211110 00 0000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
.+ ........+.|+||||.... ..+...|+..+|++|+|++..+ .....
T Consensus 66 --------------~~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~-~~s~~~~ 116 (193)
T 2oil_A 66 --------------TV-MLGTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTK-HQTYAVV 116 (193)
T ss_dssp --------------EE-EETTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTC-HHHHHTH
T ss_pred --------------EE-EECCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCC-HHHHHHH
Confidence 00 01112246889999998542 2345778899998776655433 21111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.++..+......+.|+++|+||+|+...
T Consensus 117 ~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 117 ERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 2222233333457899999999999754
No 27
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=126.57 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..++|+|+|.+|+|||||+|+|++..+.+......+.......
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~------------------------------------- 50 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRT------------------------------------- 50 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEE-------------------------------------
Confidence 5689999999999999999999998753221111111110000
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+... ....+.++||||..... .+...|+..+|++++|++..+ ......
T Consensus 51 -----------------~~~~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~-~~s~~~ 99 (181)
T 3tw8_B 51 -----------------VEINGEKVKLQIWDTAGQERFR-------------TITSTYYRGTHGVIVVYDVTS-AESFVN 99 (181)
T ss_dssp -----------------EEETTEEEEEEEEEETTGGGCS-------------SCCGGGGTTCSEEEEEEETTC-HHHHHH
T ss_pred -----------------EEECCEEEEEEEEcCCCchhhh-------------hhHHHHhccCCEEEEEEECCC-HHHHHH
Confidence 1111 12368999999965432 234678899998776665433 222222
Q ss_pred HHHHHHhhC--CCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVD--PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~--~~~~~~i~VltK~D~~~~ 221 (368)
...++..+. ....|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 100 VKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 222222221 235899999999998754
No 28
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.57 E-value=4e-16 Score=151.24 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=61.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.+|+|+|.+|+|||||+|+|++.++..++..+ +|+...+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~---------------------------------------- 273 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIE---------------------------------------- 273 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------C----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEE----------------------------------------
Confidence 46999999999999999999998642222111 1111100
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
..+.. +..++.||||||+.+.... ........+..|+..+|.+++|++..+ .....
T Consensus 274 --------------~~i~~-~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~~ 332 (476)
T 3gee_A 274 --------------ECFIH-DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLDLGT-ERLDDELT 332 (476)
T ss_dssp --------------EEEEE-TTEEEEEEC-------------------------CCCSSCSEEEEEEETTT-CSSGGGHH
T ss_pred --------------EEEEE-CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEECCC-CcchhhhH
Confidence 00111 2347999999999663221 111112345678999997776665443 33221
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
....++..+. +.|+++|+||+|+.+..
T Consensus 333 ~~~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 333 EIRELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp HHHHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred HHHHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 3444556555 68999999999998654
No 29
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.57 E-value=3e-15 Score=124.36 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+++|++|+|||||+|+|+|..+.+......+.+...+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 42 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI--------------------------------------- 42 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE---------------------------------------
Confidence 46899999999999999999998775333221111111000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
........+.++||||.... ..+...|+..+|++++|++..+.. .-....
T Consensus 43 ----------------~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 92 (166)
T 3q72_A 43 ----------------VVDGEEASLMVYDIWEQDGG-------------RWLPGHCMAMGDAYVIVYSVTDKG-SFEKAS 92 (166)
T ss_dssp ----------------EETTEEEEEEEEECC----------------------------CCEEEEEEETTCHH-HHHHHH
T ss_pred ----------------EECCEEEEEEEEECCCCccc-------------hhhhhhhhhhCCEEEEEEECCCHH-HHHHHH
Confidence 01112236789999997541 445677889999887766544321 112222
Q ss_pred HHHHh----hCCCCCceEEeeccCcccCC
Q 017631 197 KLSRE----VDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~----~~~~~~~~i~VltK~D~~~~ 221 (368)
.+... ....+.|+++|+||+|+.+.
T Consensus 93 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 93 ELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp HHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 22222 22346899999999999854
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.57 E-value=5.4e-15 Score=123.10 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=70.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++.++.+......+.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI---------------------------------------- 42 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE----------------------------------------
Confidence 3689999999999999999999987532211111110000
Q ss_pred hhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-ch
Q 017631 117 VTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TS 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~ 193 (368)
..+... ....+.|+||||..... .+...|++.+|++++|++..+.. +. ..
T Consensus 43 --------------~~~~~~~~~~~~~l~D~~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (170)
T 1g16_A 43 --------------KTVDINGKKVKLQIWDTAGQERFR-------------TITTAYYRGAMGIILVYDITDERTFTNIK 95 (170)
T ss_dssp --------------EEEESSSCEEEEEEECCTTGGGTS-------------CCCHHHHTTEEEEEEEEETTCHHHHHTHH
T ss_pred --------------EEEEECCEEEEEEEEeCCCChhhh-------------hhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 001111 12368899999975422 23467889999777666543321 11 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
.+...+......+.|+++|+||+|+..
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 233334444445789999999999953
No 31
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.57 E-value=1.2e-15 Score=138.01 Aligned_cols=122 Identities=23% Similarity=0.318 Sum_probs=76.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-+.|+++|.+|+|||||+|+|+|..+ +++..+ +|..+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~------------------------------------- 44 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQ------------------------------------- 44 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEE-------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEE-------------------------------------
Confidence 36899999999999999999999874 443322 221111111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~~ 193 (368)
+.. ....+.||||||+.+........+.. ..+++.|+ ..+|++|++++..+ ..
T Consensus 45 -----------------~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~----~~ 99 (274)
T 3i8s_A 45 -----------------FST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASN----LE 99 (274)
T ss_dssp -----------------EEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGG----HH
T ss_pred -----------------EEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCC----hH
Confidence 111 23478999999998755321111122 23455565 79998877665543 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
....+...+...+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 100 RNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 3333444555557999999999999754
No 32
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.57 E-value=9.2e-15 Score=123.64 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+ +....+++.......+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~------------------------------------ 59 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKV------------------------------------ 59 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEE------------------------------------
Confidence 346799999999999999999998875 2222222211111110
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH-
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD- 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~- 194 (368)
........+.|+||||.... ..+...|+..+|++++|++..+. .....
T Consensus 60 -----------------~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 108 (187)
T 2a9k_A 60 -----------------VLDGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEM-ESFAAT 108 (187)
T ss_dssp -----------------EETTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCH-HHHHHH
T ss_pred -----------------EECCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEEEECcCH-HHHHHH
Confidence 00111236889999996431 45667889999988766654332 11111
Q ss_pred --HH-HHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 --AV-KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 --~~-~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+. .+.......+.|+++|+||+|+.+.
T Consensus 109 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 109 ADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 11 2333344457899999999999754
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.57 E-value=9.5e-15 Score=122.72 Aligned_cols=117 Identities=18% Similarity=0.296 Sum_probs=75.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
...+.|+|+|++|+|||||+|+|++..+.+......|....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 46 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIG--------------------------------------- 46 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCC---------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeee---------------------------------------
Confidence 35789999999999999999999998863322211111110
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
...+.+ +...+.++||||....... ...++..+|++++|++ +.... ...
T Consensus 47 -------------~~~~~~---~~~~~~l~Dt~G~~~~~~~-------------~~~~~~~~d~~i~v~d-~~~~~-~~~ 95 (178)
T 2lkc_A 47 -------------AYQVTV---NDKKITFLDTPGHEAFTTM-------------RARGAQVTDIVILVVA-ADDGV-MPQ 95 (178)
T ss_dssp -------------CCEEEE---TTEEEEESCCCSSSSSSCS-------------CCSSCCCCCEEEEEEE-TTCCC-CHH
T ss_pred -------------EEEEEe---CCceEEEEECCCCHHHHHH-------------HHHHHhhCCEEEEEEE-CCCCC-cHH
Confidence 000111 2236789999997553322 3467889997776664 33322 334
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
....+..+...+.|+++|+||+|+.+.
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 445556665567899999999999864
No 34
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.57 E-value=1.3e-14 Score=140.72 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=92.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccC-cccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGS-GIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+.|+++|.+|+|||||+|+|++.++..+.. ..+|+.+..-.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~-------------------------------------- 285 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEE-------------------------------------- 285 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEE--------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEE--------------------------------------
Confidence 689999999999999999999986422222 12333221111
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCc-ccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGIT-KVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+.. +..++.||||||+. ......+... ...+..|++.+|++++|++..+ ....+ .
T Consensus 286 ----------------i~~-~g~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~VvD~s~-~~s~~-~ 341 (482)
T 1xzp_A 286 ----------------IVI-RGILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFVLDASS-PLDEE-D 341 (482)
T ss_dssp ----------------EEE-TTEEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEEEETTS-CCCHH-H
T ss_pred ----------------Eec-CCeEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEEecCCC-CCCHH-H
Confidence 111 23468999999997 5332211110 2345678899997776665433 32222 2
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHH
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAAR 261 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~ 261 (368)
..++..+ .+.|+++|+||+|+.+... ..++.. ......+++.++..+..+++.+.+.+...
T Consensus 342 ~~il~~l--~~~piivV~NK~DL~~~~~-~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 342 RKILERI--KNKRYLVVINKVDVVEKIN-EEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHHHH--TTSSEEEEEEECSSCCCCC-HHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHh--cCCCEEEEEECcccccccC-HHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3344555 2689999999999975422 111111 00112356777777777666665555543
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.56 E-value=5.4e-15 Score=122.62 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=70.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|.+|+|||||+|+|++..+ +....+++........
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~-------------------------------------- 45 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKV-------------------------------------- 45 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEE--------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEE--------------------------------------
Confidence 5799999999999999999998875 2222222211111110
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---H
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---D 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~ 194 (368)
........+.++||||... ...+...|+..+|+++++++..+. ..-. .
T Consensus 46 ---------------~~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~ 96 (168)
T 1u8z_A 46 ---------------VLDGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEM-ESFAATAD 96 (168)
T ss_dssp ---------------EETTEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCH-HHHHHHHH
T ss_pred ---------------EECCEEEEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCH-HHHHHHHH
Confidence 0011223688999999643 145677889999988776654332 1111 1
Q ss_pred HH-HHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AV-KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~-~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+. .+.......+.|+++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 11 1333334457899999999999754
No 36
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.56 E-value=1e-14 Score=124.18 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhC-CCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVD-PTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~-~~~~~~i~Vlt 214 (368)
..+.|+||||... +..+...|++++|++|+|++..+. .... .+...+.... ..+.|+++|+|
T Consensus 70 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLER-------------FRSLTTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 3689999999843 156678899999988766654332 2112 1222222222 25789999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+.+.
T Consensus 136 K~Dl~~~ 142 (195)
T 3bc1_A 136 KSDLEDQ 142 (195)
T ss_dssp CTTCGGG
T ss_pred Ccccccc
Confidence 9999753
No 37
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=1.1e-14 Score=126.28 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..++|+|+|++|+|||||+|+|++..+.+......+.......
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------------------------------------- 61 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT------------------------------------- 61 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEE-------------------------------------
Confidence 4678999999999999999999988763222111111110000
Q ss_pred hhhCCCCCCCCCceEEEEecCC-CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-
Q 017631 116 RVTGKSKQISPVPIHLSIYSPN-VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT- 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~-~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~- 192 (368)
+...+ ...+.||||||..... .+...|+..+|++|+|++..... +..
T Consensus 62 -----------------~~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 111 (213)
T 3cph_A 62 -----------------VDINGKKVKLQLWDTAGQERFR-------------TITTAYYRGAMGIILVYDVTDERTFTNI 111 (213)
T ss_dssp -----------------EEETTEEEEEEEECCTTGGGGT-------------CCCHHHHTTCSEEEEEEETTCHHHHHTH
T ss_pred -----------------EEECCEEEEEEEEeCCCcHHHH-------------HHHHHHhccCCEEEEEEECCCHHHHHHH
Confidence 11111 2368999999975422 23567889999887766543321 111
Q ss_pred hHHHHHHHhhCCCCCceEEeeccCcccCCcc---hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHHH
Q 017631 193 SDAVKLSREVDPTGERTFGVLTKLDLMDKGT---NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARRR 263 (368)
Q Consensus 193 ~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~---~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~~ 263 (368)
..+...+....+.+.|+++|+||+|+..... +...+.. .....++.+......++...+..+.....
T Consensus 112 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 112 KQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH----HHTCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233334444455789999999999953221 1222221 12235566666655555555555444443
No 38
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.56 E-value=7.2e-15 Score=124.47 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+......+... ..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~------------------------------------ 49 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF---GS------------------------------------ 49 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE---EE------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE---EE------------------------------------
Confidence 357899999999999999999998875322111111000 00
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT-- 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~-- 192 (368)
..+... ....+.|+||||... +..+...|+..+|++|+|++..+. ...
T Consensus 50 ---------------~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~ 100 (186)
T 2bme_A 50 ---------------KIINVGGKYVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSR-ETYNA 100 (186)
T ss_dssp ---------------EEEEETTEEEEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTCH-HHHHT
T ss_pred ---------------EEEEECCEEEEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcCH-HHHHH
Confidence 001111 123688999999643 155678899999988776654332 111
Q ss_pred -hHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 193 -SDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 -~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+...+......+.|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 101 LTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 12222334445567899999999999743
No 39
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.56 E-value=3.4e-15 Score=124.46 Aligned_cols=118 Identities=21% Similarity=0.181 Sum_probs=67.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+......+.......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~-------------------------------------- 47 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKK-------------------------------------- 47 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEE--------------------------------------
Confidence 468999999999999999999988752221111111000000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH--
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD-- 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~-- 194 (368)
+.+ ......+.++||||.... ..+...|++++|++++|++..+. .....
T Consensus 48 --------------~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 98 (170)
T 1z08_A 48 --------------LNI-GGKRVNLAIWDTAGQERF-------------HALGPIYYRDSNGAILVYDITDE-DSFQKVK 98 (170)
T ss_dssp --------------EES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCH-HHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHhccCCEEEEEEECcCH-HHHHHHH
Confidence 000 112236889999996431 34456788999988766654332 11112
Q ss_pred -HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 -AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 -~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+......+.|+++|+||+|+.++
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 222223333346899999999999754
No 40
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.56 E-value=6.3e-15 Score=123.78 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+.+ .....+.......
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~------------------------------------- 55 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTR------------------------------------- 55 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEE-------------------------------------
Confidence 45789999999999999999999987522 1111111111001
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
.+.+ ......+.|+||||.... ..+...|++++|++|+|++..+. ....
T Consensus 56 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 106 (179)
T 1z0f_A 56 --------------IIEV-SGQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRR-STYNHL 106 (179)
T ss_dssp --------------EEEE-TTEEEEEEEEECTTGGGT-------------CHHHHHHHHTCSEEEEEEETTCH-HHHHTH
T ss_pred --------------EEEE-CCeEEEEEEEECCCChHh-------------hhhHHHHhccCCEEEEEEeCcCH-HHHHHH
Confidence 0001 111236899999996431 34577889999987766654332 1111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+......+.|+++|+||+|+.+.
T Consensus 107 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 107 SSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2233344445557899999999999754
No 41
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.56 E-value=3.7e-15 Score=133.56 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=89.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+.|+++|++|+|||||+|+|+|..+ +++.-+ +|.....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~--------------------------------------- 44 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKE--------------------------------------- 44 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEE---------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEE---------------------------------------
Confidence 36799999999999999999999875 222211 1111110
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~~ 193 (368)
..+.. ....+.||||||..+..... .. +.++..|+ ..+|++++|++..+. .
T Consensus 45 ---------------~~~~~-~~~~~~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~ii~V~D~t~~----~ 97 (258)
T 3a1s_A 45 ---------------GVFTY-KGYTINLIDLPGTYSLGYSS----ID---EKIARDYLLKGDADLVILVADSVNP----E 97 (258)
T ss_dssp ---------------EEEEE-TTEEEEEEECCCCSSCCSSS----HH---HHHHHHHHHHSCCSEEEEEEETTSC----H
T ss_pred ---------------EEEEE-CCeEEEEEECCCcCccCCCC----HH---HHHHHHHHhhcCCCEEEEEeCCCch----h
Confidence 11111 23478999999998754331 11 34556666 589977766655432 2
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCcc---hHHHhhhCCCccCCCCeEEEEeCCccccccCccHH
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKGT---NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMI 258 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~~---~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~ 258 (368)
....+...+...+.|+++|+||+|+..... +...+.+ .++.+++.+...++.++.++++.+
T Consensus 98 ~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~----~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 98 QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQK----HLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHH----HHCSCEEECCTTTCTTHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHH----HcCCCEEEEEeeCCcCHHHHHHHH
Confidence 333455566667899999999999974321 1222211 223455555555555544444433
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=9e-15 Score=123.09 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+....+++........
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~------------------------------------ 52 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKV------------------------------------ 52 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEE------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEE------------------------------------
Confidence 34689999999999999999999988643322222211111000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-c-ch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-A-TS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~-~~ 193 (368)
+.+ ......+.++||||... +..+...|+.++|++|+|++..+... . ..
T Consensus 53 ---------------~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 53 ---------------LDV-DGVKVKLQMWDTAGQER-------------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 001 11123688999999643 14556788999998877665433211 1 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+......+.|+++|+||+|+.++
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 2333344444567899999999999864
No 43
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.56 E-value=1.1e-14 Score=123.94 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=71.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+......+ +....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~------------------------------------- 61 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFKV------------------------------------- 61 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC---CEEEE-------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee---EEEEE-------------------------------------
Confidence 46899999999999999999999875322111110 00000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~ 194 (368)
..+.+ ......+.|+||||..... .+...|+..+|++|+|++..+.. +. ...
T Consensus 62 ------------~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 62 ------------KTVYR-HDKRIKLQIWDTAGQERYR-------------TITTAYYRGAMGFLLMYDIANQESFAAVQD 115 (189)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCSCCSSC-------------CSGGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEE-CCeEEEEEEEeCCCcHHHh-------------hhHHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00001 1122468999999965422 23567889999877666543321 11 112
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+......+.|+++|+||+|+.+.
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 233334444457899999999999754
No 44
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.56 E-value=8.2e-15 Score=125.22 Aligned_cols=119 Identities=16% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|.+|+|||||+|+|++..+.+......+. ....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~---~~~~------------------------------------- 65 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV---DFKI------------------------------------- 65 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTE---EEEE-------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce---eEEE-------------------------------------
Confidence 457999999999999999999998752211111110 0000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~ 194 (368)
..+.+ ......+.|+||||... +..+...|++.+|++|+|++..+.. +.. ..
T Consensus 66 ------------~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~ 119 (192)
T 2il1_A 66 ------------KTVEL-RGKKIRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITKKETFDDLPK 119 (192)
T ss_dssp ------------EEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEE-CCeEEEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 00011 11124689999999643 1456788899999887666543321 111 22
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+......+.|+++|+||+|+.+.
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccc
Confidence 334455555667899999999999754
No 45
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=6e-15 Score=142.26 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=73.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.|.|++||++|+|||||+|+|+|..+..+.. .|-
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~-----~~g----------------------------------------- 36 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVED-----TPG----------------------------------------- 36 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecC-----CCC-----------------------------------------
Confidence 4899999999999999999999976521211 110
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.+.+.....+ ......+.||||||+.... ....+.+...+..+++++|++++++ ++.......+ .
T Consensus 37 -------~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vv-D~~~~~~~~d-~ 101 (436)
T 2hjg_A 37 -------VTRDRIYSSA-EWLNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMV-NGREGVTAAD-E 101 (436)
T ss_dssp -----------CEEEEC-TTCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEE-ETTTCSCHHH-H
T ss_pred -------CccceEEEEE-EECCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEE-eCCCCCCHHH-H
Confidence 0011111111 2234579999999996422 1255667888899999999776555 4444433333 3
Q ss_pred HHHHhhCCCCCceEEeeccCcccCC
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+++.+...+.|+++|+||+|+...
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHHHHHHcCCCEEEEEECccCccc
Confidence 4666666778999999999999754
No 46
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.56 E-value=1.1e-14 Score=125.44 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=73.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+...... .+.....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~------------------------------------ 48 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFKVK------------------------------------ 48 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC---SEEEEEE------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc---ceeEEEE------------------------------------
Confidence 5789999999999999999999987632211111 1111100
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
.+ ........+.|+||||... +..+...|++++|++|+|++..+. ..-.
T Consensus 49 -------------~~-~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~ 100 (203)
T 1zbd_A 49 -------------TI-YRNDKRIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYDITNE-ESFNAVQ 100 (203)
T ss_dssp -------------EE-EETTEEEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEETTCH-HHHHHHH
T ss_pred -------------EE-EECCeEEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEECcCH-HHHHHHH
Confidence 00 0011224789999999843 155678899999987766654332 1111
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 2222333334457899999999999754
No 47
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.56 E-value=1e-14 Score=122.62 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..++|+|+|++|+|||||+|+|++..+. ....+++.......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~------------------------------------- 49 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKI------------------------------------- 49 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEE-------------------------------------
Confidence 4578999999999999999999998652 22222222111100
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+... ....+.|+||||..... .+...|+..+|++++|++..+. .....
T Consensus 50 -----------------~~~~~~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~-~s~~~ 98 (181)
T 2fn4_A 50 -----------------CSVDGIPARLDILDTAGQEEFG-------------AMREQYMRAGHGFLLVFAINDR-QSFNE 98 (181)
T ss_dssp -----------------EEETTEEEEEEEEECCCTTTTS-------------CCHHHHHHHCSEEEEEEETTCH-HHHHH
T ss_pred -----------------EEECCEEEEEEEEECCCchhhH-------------HHHHHHHhhCCEEEEEEeCCCH-HHHHH
Confidence 1111 12368899999975422 2346678889988766644332 11111
Q ss_pred ---HH-HHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 ---AV-KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ---~~-~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+. .+.+.....+.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 99 VGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 11 2334445567899999999999754
No 48
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.55 E-value=2.2e-14 Score=129.61 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=74.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.+.|+++|++|+|||||+|+|+|..+ +++..+.+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~----------------------------------------- 40 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK----------------------------------------- 40 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE-----------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe-----------------------------------------
Confidence 57899999999999999999999875 443322111110
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccchH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~~~ 194 (368)
....+. .....+.+|||||+.+..... .. ..++..|+ .++|+++++++..+. ..
T Consensus 41 ------------~~~~~~-~~~~~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d~vi~v~D~~~~----~~ 96 (271)
T 3k53_A 41 ------------KEGIME-YREKEFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNADVIVDIVDSTCL----MR 96 (271)
T ss_dssp ------------EEEEEE-ETTEEEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCSEEEEEEEGGGH----HH
T ss_pred ------------eEEEEE-ECCceEEEEeCCCccccccCC----HH---HHHHHHhhhccCCcEEEEEecCCcc----hh
Confidence 000111 123358999999998754331 11 33456666 689987766655432 22
Q ss_pred HHHHHHhhCCCC-CceEEeeccCcccC
Q 017631 195 AVKLSREVDPTG-ERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~~~~~~-~~~i~VltK~D~~~ 220 (368)
...+...+...+ .|+++|+||+|+.+
T Consensus 97 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 97 NLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred hHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 333444444445 99999999999864
No 49
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.55 E-value=1e-14 Score=127.00 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=61.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc---hHHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT---SDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~---~~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.||||||...... +...|+..+|++|+|++..+. ... ..+...+......+.|+++|+||
T Consensus 61 ~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAV-------------LKDVYYIGASGAILFFDVTSR-ITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp EEEEEEEECSGGGTSC-------------CCHHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred EEEEEEecCCchhhch-------------HHHHHhhcCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 3689999999755322 245678899987766654432 111 22333444444557899999999
Q ss_pred CcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHHHH
Q 017631 216 LDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAARR 262 (368)
Q Consensus 216 ~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~~~ 262 (368)
+|+.+...................++.+...++.+++..+..+....
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp TTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99975422111111111222334566676666666555555544433
No 50
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.55 E-value=8.7e-15 Score=121.46 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=70.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|++|+|||||+|+|++..+ +....+++.......
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 43 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQ--------------------------------------- 43 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEE---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEE---------------------------------------
Confidence 4799999999999999999998765 222111111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~ 195 (368)
+ ........+.++||||.... ..+...|+..+|+++++++..+.. +.. ..+
T Consensus 44 -------------~-~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 44 -------------V-EVDCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96 (167)
T ss_dssp -------------E-ESSSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred -------------E-EECCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 0 00112236889999997542 234567888899887766543321 111 122
Q ss_pred HH-HHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VK-LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~-l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.. +.......+.|+++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhhCcCCCcEEEEEECcccccc
Confidence 22 333334557899999999999754
No 51
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.55 E-value=9.3e-15 Score=121.64 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=72.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+... +.........
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~-------------------------------------- 46 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNIN-PTIGASFMTK-------------------------------------- 46 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCC-CCCSEEEEEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCC-CceeEEEEEE--------------------------------------
Confidence 3679999999999999999999987532211 1110000000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
.+.+ ......+.++||||.... ..+...|+..+|++++|++..+. ....
T Consensus 47 -------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 98 (170)
T 1z0j_A 47 -------------TVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDITKE-ETFSTLK 98 (170)
T ss_dssp -------------EEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCH-HHHHHHH
T ss_pred -------------EEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEECcCH-HHHHHHH
Confidence 0001 112246889999998442 33456788999987766654332 2112
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+........|+++|+||+|+.+.
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 99 NWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 2233344444556889999999999854
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=124.74 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..+.|+|+|.+|+|||||+|+|++..+ +....+++.......+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~------------------------------------ 55 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKV------------------------------------ 55 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEE------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEE------------------------------------
Confidence 457899999999999999999998875 2222222211111110
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
........+.|+||||.... ..+...|+..+|+++++++..+. ..-.
T Consensus 56 -----------------~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~ 104 (206)
T 2bov_A 56 -----------------VLDGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEM-ESFAAT 104 (206)
T ss_dssp -----------------EETTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCH-HHHHHH
T ss_pred -----------------EECCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEEEECCCH-HHHHHH
Confidence 00111236889999996431 45667889999988766654332 1111
Q ss_pred -HHHH-HHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVK-LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~-l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+.. +.......+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 105 ADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 1222 223333457899999999999754
No 53
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.55 E-value=1.3e-15 Score=147.22 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=78.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.+|+++|++|+|||||+|+|+|.++..+...+ +|+.. + ..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~-----------------------------------~----~~ 265 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV-----------------------------------V----ES 265 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHH-----------------------------------H----HH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEE-----------------------------------E----EE
Confidence 46999999999999999999997652222211 11111 0 00
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
. + ..+..++.||||||+.+.... ........+..++..+|.+++|++. +...... ..
T Consensus 266 -------------~--i-~~~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~-s~~~~~~-~~ 322 (462)
T 3geh_A 266 -------------Q--L-VVGGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTIDA-ATGWTTG-DQ 322 (462)
T ss_dssp -------------E--E-EETTEEEEECC-------------------------CCCCSCSEEEEEEET-TTCSCHH-HH
T ss_pred -------------E--E-EECCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEecc-CCCCCHH-HH
Confidence 0 1 112346899999999653221 1111123356688999977766554 4333333 23
Q ss_pred HHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHH
Q 017631 197 KLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMI 258 (368)
Q Consensus 197 ~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~ 258 (368)
.+.+.+.. .|+++|+||+|+.+.... ..+ .......+++.++..++.+++.+.+.+
T Consensus 323 ~i~~~l~~--~piivV~NK~Dl~~~~~~--~~~--~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 323 EIYEQVKH--RPLILVMNKIDLVEKQLI--TSL--EYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp HHHHHHTT--SCEEEEEECTTSSCGGGS--TTC--CCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHhccC--CcEEEEEECCCCCcchhh--HHH--HHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 45555543 799999999999864321 111 112223456667666666555444443
No 54
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.55 E-value=1.1e-14 Score=121.38 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|.+..+... .+ |... ...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~-t~~~-~~~------------------------------------- 44 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT--IP-TIGF-NVE------------------------------------- 44 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC--CC-CSSE-EEE-------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc--CC-cCcc-ceE-------------------------------------
Confidence 457899999999999999999998765211 11 1110 000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
. +.. ....+.++||||.... ..+...|++.+|++++|++..+.. .-...
T Consensus 45 --------------~--~~~-~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 93 (171)
T 1upt_A 45 --------------T--VTY-KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRD-RIGIS 93 (171)
T ss_dssp --------------E--EEE-TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCT-THHHH
T ss_pred --------------E--EEE-CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 0 111 2347899999998542 334567899999887666544321 12222
Q ss_pred HHHH-HhhC---CCCCceEEeeccCcccCC
Q 017631 196 VKLS-REVD---PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~-~~~~---~~~~~~i~VltK~D~~~~ 221 (368)
...+ ..+. ..+.|+++|+||+|+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 94 KSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 2222 2222 257899999999999865
No 55
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.55 E-value=2e-14 Score=123.31 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=40.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhC-CCCCceEEeeccCc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVD-PTGERTFGVLTKLD 217 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~-~~~~~~i~VltK~D 217 (368)
..+.||||||.... ..+...|++.+|++++|++. +..........++..+. ..+.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~-~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFDI-SNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEET-TCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEEC-CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 47899999996442 23467889999977766554 33222222222222222 12489999999999
No 56
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.55 E-value=2.4e-14 Score=120.98 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+ +....+.+........
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~------------------------------------ 59 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHT------------------------------------ 59 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEE------------------------------------
Confidence 456799999999999999999998764 2222222211110000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-ch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~ 193 (368)
........+.++||||..... .+...|++++|++++|++..+.. +. ..
T Consensus 60 -----------------~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 60 -----------------EIDNQWAILDVLDTAGQEEFS-------------AMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp -----------------EETTEEEEEEEEECCSCGGGC-------------SSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred -----------------EeCCcEEEEEEEECCCchhhH-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 011112346789999975422 23467788899887766544321 10 11
Q ss_pred HHHH-HHHhhCCCCCceEEeeccCcccCCcch----HHHhhhCCCccCCCCeEEEEeC-CccccccCcc
Q 017631 194 DAVK-LSREVDPTGERTFGVLTKLDLMDKGTN----ALDILEGRSYPLQHPWVGIVNR-SQADINKNVD 256 (368)
Q Consensus 194 ~~~~-l~~~~~~~~~~~i~VltK~D~~~~~~~----~~~~~~~~~~~~~~g~~~v~~~-s~~~~~~~~~ 256 (368)
.+.. +.......+.|+++|+||+|+.+.... ...+.. .....++.+... +..++++.+.
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT----KYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH----HHTCCEEEEBCSSSCBSHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH----HhCCeEEEeccCCCCCCHHHHHH
Confidence 2222 233344567899999999999753221 222221 123456666666 5544444333
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=121.66 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.++|+|+|++|+|||||+|+|++..+.+......+.. ...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~-------------------------------------- 43 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YER-------------------------------------- 43 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEE--------------------------------------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEE--------------------------------------
Confidence 4789999999999999999999987532222111100 000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.+.+ ......+.++||||..... ...+...|+..+|++++|++..+. ..-....
T Consensus 44 -------------~~~~-~~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 97 (175)
T 2nzj_A 44 -------------TLTV-DGEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADR-GSFESAS 97 (175)
T ss_dssp -------------EEEE-TTEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCH-HHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCH-HHHHHHH
Confidence 0001 1112368899999985421 134456788999988776654332 1111221
Q ss_pred HHHHhh----CCCCCceEEeeccCcccCC
Q 017631 197 KLSREV----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~----~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+ ...+.|+++|+||+|+.+.
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 222222 2347899999999999754
No 58
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=6.9e-15 Score=125.66 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+ ...+.. .+.....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~--~~~~~~~------------------------------------ 63 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTI--GASFMTK------------------------------------ 63 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCS--SEEEEEE------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCc--ceeEEEE------------------------------------
Confidence 4679999999999999999999887521 111110 0000000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
.+.+ ......+.|+||||.... ..+...|+..+|++|+|++..+. ....
T Consensus 64 -------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~~-~s~~~~~ 115 (192)
T 2fg5_A 64 -------------TVPC-GNELHKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITKQ-DSFYTLK 115 (192)
T ss_dssp -------------EEEC-SSSEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCT-HHHHHHH
T ss_pred -------------EEEe-CCEEEEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCCH-HHHHHHH
Confidence 0000 112346899999996442 33456788999988776654332 2112
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
.+...+......+.|+++|+||+|+.+
T Consensus 116 ~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 116 KWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHhCCCCCcEEEEEECccccc
Confidence 223333444455789999999999975
No 59
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=1.3e-14 Score=140.78 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=76.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|.|++||++|+|||||+|+|+|.++..+.. .|
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~-----~~----------------------------------------- 55 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVED-----TP----------------------------------------- 55 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC----------------------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-----CC-----------------------------------------
Confidence 47999999999999999999999976522221 11
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+.+.+.....+ ......+.||||||+.... +...+.+...+..+++.+|+++++++ +....... .
T Consensus 56 -------g~t~~~~~~~~-~~~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~VvD-~~~~~~~~-d 120 (456)
T 4dcu_A 56 -------GVTRDRIYSSA-EWLNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMVN-GREGVTAA-D 120 (456)
T ss_dssp ------------CEEEEC-TTCSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEE-SSSCSCHH-H
T ss_pred -------CcceeEEEEEE-EECCceEEEEECCCCCCcc-----hHHHHHHHHHHHhhHhhCCEEEEEEe-CCCCCChH-H
Confidence 01111111111 2234589999999987422 22466778888999999997776654 44444333 3
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+++.+...+.|+++|+||+|+.+.
T Consensus 121 ~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHHHHHHHHcCCCEEEEEECccchhh
Confidence 44777777788999999999998754
No 60
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.54 E-value=1.9e-14 Score=124.27 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+ +....+.........
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 48 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIK------------------------------------- 48 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEE-------------------------------------
Confidence 347899999999999999999999875 222111111110000
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+... ....+.|+||||..... .+...|+..+|++|+|++..+ ......
T Consensus 49 ----------------~~~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~vilv~d~~~-~~s~~~ 98 (206)
T 2bcg_Y 49 ----------------TVELDGKTVKLQIWDTAGQERFR-------------TITSSYYRGSHGIIIVYDVTD-QESFNG 98 (206)
T ss_dssp ----------------EEEETTEEEEEEEECCTTTTTTT-------------CCCGGGGTTCSEEEEEEETTC-HHHHHH
T ss_pred ----------------EEEECCEEEEEEEEeCCChHHHH-------------HHHHHhccCCCEEEEEEECcC-HHHHHH
Confidence 01111 12368999999975422 235678899997776665433 222122
Q ss_pred ---HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 ---AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ---~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
++..+......+.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 99 VKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 222333444457899999999999864
No 61
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.54 E-value=3e-14 Score=123.94 Aligned_cols=102 Identities=14% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCC----CCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDP----TGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~----~~~~~i~Vlt 214 (368)
..+.||||||.. .+..+...|+..+|++|+|++. ...........++..+.. .+.|+++|+|
T Consensus 84 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~iilV~D~-~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQE-------------RFRSLTTAFFRDAMGFLLMFDL-TSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESHH-------------HHHHHHHHHHTTCCEEEEEEET-TCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCcH-------------hHHhHHHHHhcCCCEEEEEEEC-cCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 468999999952 2356778899999987766654 332222223334444432 4689999999
Q ss_pred cCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccHH
Q 017631 215 KLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMI 258 (368)
Q Consensus 215 K~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~ 258 (368)
|+|+.+... +...+.. .....++.+...+..++...+..+
T Consensus 150 K~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 150 KADLPDQREVNERQARELAD----KYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp CTTCGGGCCSCHHHHHHHHH----HTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred CCccccccccCHHHHHHHHH----HCCCcEEEEECCCCCCHHHHHHHH
Confidence 999975322 1222221 123456666665555544444333
No 62
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.54 E-value=7.7e-15 Score=132.39 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=74.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+.|+++|++|+|||||+|+|+|.... ++.-+ +|..+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~---------------------------------------- 41 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERK---------------------------------------- 41 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEE----------------------------------------
Confidence 468999999999999999999997642 22211 121111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~~~~ 193 (368)
...+.. ...+.+|||||..+..... .. +.++..|+. .+|++|+|++..+. .
T Consensus 42 --------------~~~~~~--~~~l~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~vi~V~D~t~~----e 94 (272)
T 3b1v_A 42 --------------SGLVKK--NKDLEIQDLPGIYSMSPYS----PE---AKVARDYLLSQRADSILNVVDATNL----E 94 (272)
T ss_dssp --------------EEECTT--CTTEEEEECCCCSCSSCSS----HH---HHHHHHHHHTTCCSEEEEEEEGGGH----H
T ss_pred --------------EEEEec--CCeEEEEECCCcCccCCCC----hH---HHHHHHHHhcCCCCEEEEEecCCch----H
Confidence 111212 4579999999987754321 11 445667765 69977766655331 2
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
....+..++...+.|+++|+||+|+..
T Consensus 95 ~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 95 RNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 233344444446899999999999974
No 63
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.54 E-value=1.9e-14 Score=122.70 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=70.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+......+..... .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~-------------------------------------- 61 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-R-------------------------------------- 61 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEE-E--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEE-E--------------------------------------
Confidence 4579999999999999999999887632221111100000 0
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
.+.+ ......+.|+||||..... .+...|++.+|++|+|++..+.. ...
T Consensus 62 -------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 113 (191)
T 2a5j_A 62 -------------MVNI-DGKQIKLQIWDTAGQESFR-------------SITRSYYRGAAGALLVYDITRRE-TFNHLT 113 (191)
T ss_dssp -------------EEEE-TTEEEEEEEECCTTGGGTS-------------CCCHHHHTTCSEEEEEEETTCHH-HHHTHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCchhhh-------------hhHHHHhccCCEEEEEEECCCHH-HHHHHH
Confidence 0011 1112368999999975422 23567889999887766543321 111
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.++..+......+.|+++|+||+|+.+.
T Consensus 114 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 114 SWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 2222333334457899999999999753
No 64
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.54 E-value=2.2e-14 Score=120.43 Aligned_cols=123 Identities=21% Similarity=0.188 Sum_probs=71.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.+|+++|++|+|||||+|+|++..+..+...+ +|+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~---------------------------------------- 44 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR---------------------------------------- 44 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEE----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceee----------------------------------------
Confidence 57999999999999999999997642121111 1111100
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccchHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATSDA 195 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~~~ 195 (368)
-.+.. +...+.++||||+...... ........+..+++.+|+++++++..+.. .....+
T Consensus 45 --------------~~~~~-~~~~~~l~Dt~G~~~~~~~-----~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~ 104 (172)
T 2gj8_A 45 --------------EHIHI-DGMPLHIIDTAGLREASDE-----VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEI 104 (172)
T ss_dssp --------------EEEEE-TTEEEEEEECCCCSCCSSH-----HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHH
T ss_pred --------------EEEEE-CCeEEEEEECCCcccchhH-----HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 01111 1235889999998653211 11111122346789999877766543322 222223
Q ss_pred HHHHHhhCCCCCceEEeeccCcccC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...+....+.+.|+++|+||+|+..
T Consensus 105 ~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 105 WPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp CHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHHHhcccCCCEEEEEECccCCc
Confidence 3333444445689999999999964
No 65
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.54 E-value=1.7e-14 Score=122.81 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+.+......+... ...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~------------------------------------- 60 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF-RER------------------------------------- 60 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE-EEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEE-EEE-------------------------------------
Confidence 346899999999999999999998775222111111000 000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHH-HHHHHhhcCCCeEEEEEeeCCCcc--cc
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIE-TMVRSYIEKPNCLILAITPANQDL--AT 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~iil~v~~~~~~~--~~ 192 (368)
.+.+ ......+.|+||||... +. .+...|++.+|++|+|++..+... ..
T Consensus 61 --------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 61 --------------AVDI-DGERIKIQLWDTAGQER-------------FRKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCSHH-------------HHTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred --------------EEEE-CCEEEEEEEEECCCchh-------------hhhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 0001 11124689999999633 13 557788999998876665433210 01
Q ss_pred hHHHH-HHHhhCCCCCceEEeeccCcccCC
Q 017631 193 SDAVK-LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 ~~~~~-l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+.. +.......+.|+++|+||+|+.+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12222 223333557899999999999754
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.54 E-value=3.3e-14 Score=120.50 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=69.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|++|+|||||+|+|++..+.+. ..+++........
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~-------------------------------------- 45 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQV-------------------------------------- 45 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCC-CCTTCCEEEEEEE--------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCchheEEEEE--------------------------------------
Confidence 5799999999999999999998875222 2222211111010
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---H
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---D 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~ 194 (368)
........+.|+||||.... ..+...|+..+|+++++++..+. .... .
T Consensus 46 ---------------~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~ 96 (189)
T 4dsu_A 46 ---------------VIDGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNT-KSFEDIHH 96 (189)
T ss_dssp ---------------EETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCH-HHHHHHHH
T ss_pred ---------------EECCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCH-HHHHHHHH
Confidence 01112235788999996542 23456788889977766654332 1111 1
Q ss_pred HHH-HHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVK-LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~-l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+.. +.......+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 97 YREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred HHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 222 223334457899999999999854
No 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.53 E-value=1.1e-14 Score=121.24 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=63.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+.+|+|+|++|+|||||+|+|++..+-.......+.......
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 43 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERR-------------------------------------- 43 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEE--------------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEE--------------------------------------
Confidence 358999999999999999999987642211111111100000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~ 194 (368)
+.+ ......+.++||||..... ..+...|++.+|++++|++..+.. +.. ..
T Consensus 44 --------------~~~-~~~~~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (169)
T 3q85_A 44 --------------IMV-DKEEVTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96 (169)
T ss_dssp --------------EEE-TTEEEEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred --------------EEE-CCeEEEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHH
Confidence 001 1122468899999985421 113445677899887766543321 101 12
Q ss_pred HHH-HHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVK-LSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~-l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+.. +.......+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 97 TLLRLRAGRPHHDLPVILVGNKSDLARS 124 (169)
T ss_dssp HHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence 222 222222347899999999999743
No 68
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.8e-14 Score=124.29 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=74.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+ +....++........
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 66 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIK-------------------------------------- 66 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEE--------------------------------------
Confidence 46899999999999999999998775 222221111000000
Q ss_pred hhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-c-ch
Q 017631 117 VTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-A-TS 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~-~~ 193 (368)
.+... ....+.|+||||... +..+...|++.+|++|+|++..+... . ..
T Consensus 67 ---------------~~~~~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~ 118 (201)
T 2ew1_A 67 ---------------TVEINGEKVKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCEESFRCLP 118 (201)
T ss_dssp ---------------EEEETTEEEEEEEEEECCSGG-------------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHH
T ss_pred ---------------EEEECCEEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 01111 123688999999633 25667889999998877665433211 0 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+......+.|+++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3333444455567899999999999743
No 69
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.53 E-value=7.1e-15 Score=122.13 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=69.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+ +....+........
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 44 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLE--------------------------------------- 44 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEE---------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEE---------------------------------------
Confidence 46899999999999999999998765 22111111111000
Q ss_pred hhCCCCCCCCCceEEEEec-CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 117 VTGKSKQISPVPIHLSIYS-PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~-~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
..+.. .....+.++||||.... ..+...|+..+|+++++++..+.. ...
T Consensus 45 --------------~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 96 (168)
T 1z2a_A 45 --------------RQIQVNDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRE-SFEAI 96 (168)
T ss_dssp --------------EEEEETTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHH-HHHTH
T ss_pred --------------EEEEECCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHH-HHHHH
Confidence 00111 11246899999996542 223567889999877666543321 111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+.... .+.|+++|+||+|+.++
T Consensus 97 ~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 97 SSWREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 1222222222 36899999999999754
No 70
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=8.7e-15 Score=124.85 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+.+......+ ....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~--------------------------------------- 61 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-IDFK--------------------------------------- 61 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET-TTEE---------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee-eEEE---------------------------------------
Confidence 457899999999999999999998775221110000 0000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-c-ch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-A-TS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~-~~ 193 (368)
...+.+ ......+.|+||||... +..+...|++.+|++|+|++..+... . ..
T Consensus 62 ------------~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 115 (191)
T 3dz8_A 62 ------------VKTVYR-HEKRVKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESFNAVQ 115 (191)
T ss_dssp ------------EEEEEE-TTTTEEEEEECHHHHHH-------------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCChHH-------------HHHHHHHHHccCCEEEEEEECcCHHHHHHHH
Confidence 000001 12234689999999532 25677889999998877665433211 1 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+......+.|+++|+||+|+...
T Consensus 116 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 116 DWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 2333444445567899999999999644
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.53 E-value=1.1e-14 Score=122.37 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=70.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|++|+|||||+|+|++..+.+......+.......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 55 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--------------------------------------- 55 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEE---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEE---------------------------------------
Confidence 57999999999999999999987753222111111110000
Q ss_pred hCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chH
Q 017631 118 TGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSD 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~ 194 (368)
+... ....+.++||||.... ..+...|+.++|++++|++..+.. +. ...
T Consensus 56 ---------------~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 107 (179)
T 2y8e_A 56 ---------------MYLEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSK 107 (179)
T ss_dssp ---------------EEETTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHH
T ss_pred ---------------EEECCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHH
Confidence 1111 1236899999996442 234567888999877666543321 11 112
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+......+.|+++|+||+|+.++
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCccccc
Confidence 222223333457899999999999754
No 72
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.53 E-value=1.2e-14 Score=122.58 Aligned_cols=117 Identities=21% Similarity=0.170 Sum_probs=69.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.++|+|+|++|+|||||+|+|++..+ +....+++.......+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~------------------------------------- 47 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLI------------------------------------- 47 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEE-------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEE-------------------------------------
Confidence 47899999999999999999997664 2222222221110000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
........+.|+||||...... +...|++.+|++++|++..+. ..-....
T Consensus 48 ----------------~~~~~~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~ 97 (181)
T 3t5g_A 48 ----------------TVNGQEYHLQLVDTAGQDEYSI-------------FPQTYSIDINGYILVYSVTSI-KSFEVIK 97 (181)
T ss_dssp ----------------EETTEEEEEEEEECCCCCTTCC-------------CCGGGTTTCSEEEEEEETTCH-HHHHHHH
T ss_pred ----------------EECCEEEEEEEEeCCCchhhhH-------------HHHHHHhcCCEEEEEEECCCH-HHHHHHH
Confidence 0011123678999999765322 245688899988776654332 1111111
Q ss_pred ----HHHHhhCCCCCceEEeeccCcccCC
Q 017631 197 ----KLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ----~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+.......+.|+++|+||+|+...
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 2333444457899999999999754
No 73
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.53 E-value=2.8e-14 Score=119.75 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..++|+|+|++|+|||||+|+|++..+.+.. .+.... ...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~--~~~------------------------------------- 45 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL-FHTIGV--EFL------------------------------------- 45 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSE--EEE-------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceee--eEE-------------------------------------
Confidence 3578999999999999999999987752111 111000 000
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT-- 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~-- 192 (368)
...+... ....+.++||||... +..+...|++.+|++++|++..+. ...
T Consensus 46 --------------~~~~~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~ 97 (177)
T 1wms_A 46 --------------NKDLEVDGHFVTMQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFSVDDS-QSFQN 97 (177)
T ss_dssp --------------EEEEEETTEEEEEEEEECCCCGG-------------GHHHHGGGGTTCSEEEEEEETTCH-HHHHT
T ss_pred --------------EEEEEECCEEEEEEEEeCCCchh-------------hhhhHHHHHhcCCEEEEEEECcCH-HHHHH
Confidence 0001111 123689999999643 155677899999977766654332 111
Q ss_pred -hHHHHHHHhhC----CCCCceEEeeccCcccC
Q 017631 193 -SDAVKLSREVD----PTGERTFGVLTKLDLMD 220 (368)
Q Consensus 193 -~~~~~l~~~~~----~~~~~~i~VltK~D~~~ 220 (368)
..+...+.... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 98 LSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp HHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 11222222221 25689999999999974
No 74
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.53 E-value=4.3e-15 Score=138.12 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+|.|++||.+|||||||+|+|++.+....+...+|..|..-.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~-------------------------------------- 199 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------------------------------------- 199 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE--------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE--------------------------------------
Confidence 688999999999999999999987632112222333332111
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC---Ccccc-
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN---QDLAT- 192 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~---~~~~~- 192 (368)
+..++...++|+||||+....... ..+. ....+++.++|++|+|++.++ .+...
T Consensus 200 ----------------v~~~~~~~~~l~DtPG~i~~a~~~--~~l~----~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 200 ----------------VETDDGRSFVMADLPGLIEGAHQG--VGLG----HQFLRHIERTRVIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp ----------------EECSSSCEEEEEEHHHHHHHTTCT--TTTH----HHHHHHHHHCCEEEEEEESSCSSCCCHHHH
T ss_pred ----------------EEeCCCceEEEecCCCCccccccc--chhH----HHHHHHHHhccEEEEEEECCcccccChHHH
Confidence 222233579999999987643321 1121 122344567998877766544 21111
Q ss_pred -hHHHHHHHhhCC--CCCceEEeeccCcccCCc
Q 017631 193 -SDAVKLSREVDP--TGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 193 -~~~~~l~~~~~~--~~~~~i~VltK~D~~~~~ 222 (368)
..+...+..+.+ ...|+++|+||+|+....
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 112223333332 478999999999998653
No 75
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.52 E-value=6.3e-14 Score=116.03 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=45.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhh----CCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREV----DPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~----~~~~~~~i~Vl 213 (368)
...+.++||||... +..+...|+.++|++++|++..+ ...-......+..+ ...+.|+++|+
T Consensus 43 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (164)
T 1r8s_A 43 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDELRDAVLLVFA 108 (164)
T ss_dssp SCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEETTC-GGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHhchhhcCCeEEEEE
Confidence 35789999999843 15567789999998876665433 21122222222222 22368999999
Q ss_pred ccCcccCC
Q 017631 214 TKLDLMDK 221 (368)
Q Consensus 214 tK~D~~~~ 221 (368)
||+|+.+.
T Consensus 109 nK~Dl~~~ 116 (164)
T 1r8s_A 109 NKQDLPNA 116 (164)
T ss_dssp ECTTSTTC
T ss_pred ECcCCcCC
Confidence 99999754
No 76
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.52 E-value=1.6e-14 Score=140.08 Aligned_cols=127 Identities=16% Similarity=0.269 Sum_probs=78.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+.|+++|++|+|||||+|+|+|.+...++..+ +|+.+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~--------------------------------------- 234 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--------------------------------------- 234 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTT---------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEE---------------------------------------
Confidence 5688999999999999999999998643322211 111110
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHH-HHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIET-MVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
... +.. +...+.||||||+.+........ +.+.. ....|++.+|++++|+ ++...+..+
T Consensus 235 -------------~~~--~~~-~~~~~~l~DT~G~~~~~~~~~~~---e~~~~~~~~~~~~~ad~~llvi-D~~~~~~~~ 294 (456)
T 4dcu_A 235 -------------DTS--FTY-NQQEFVIVDTAGMRKKGKVYETT---EKYSVLRALKAIDRSEVVAVVL-DGEEGIIEQ 294 (456)
T ss_dssp -------------SEE--EEE-TTEEEEETTGGGTTTBTTBCCCC---SHHHHHHHHHHHHHCSEEEEEE-ETTTCCCHH
T ss_pred -------------EEE--EEE-CCceEEEEECCCCCcCcccchHH---HHHHHHHHHHHHhhCCEEEEEE-eCCCCcCHH
Confidence 001 111 22378999999987644221111 11122 2446889999776655 445444444
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+ ..++..+...+.++++|+||+|+.+..
T Consensus 295 ~-~~~~~~~~~~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 295 D-KRIAGYAHEAGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp H-HHHHHHHHHTTCEEEEEEECGGGSCCC
T ss_pred H-HHHHHHHHHcCCCEEEEEEChhcCCCc
Confidence 3 345555555789999999999998653
No 77
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=125.54 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~------------------------------------ 65 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIV------------------------------------ 65 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEE------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEE------------------------------------
Confidence 3567999999999999999999998753 221111111110000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
........+.||||||..... .+...|++.+|++++|++..+. ..-...
T Consensus 66 -----------------~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 114 (201)
T 3oes_A 66 -----------------TLGKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSL-HSFQVI 114 (201)
T ss_dssp -----------------C----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCH-HHHHHH
T ss_pred -----------------EECCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCH-HHHHHH
Confidence 001123467899999975432 2346788999988776654432 111222
Q ss_pred HHHHHhh----CCCCCceEEeeccCcccCC
Q 017631 196 VKLSREV----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~----~~~~~~~i~VltK~D~~~~ 221 (368)
..+...+ ...+.|+++|+||+|+.+.
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 2233333 2336899999999999754
No 78
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.52 E-value=1.8e-14 Score=121.31 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|.+|+|||||+|+|++..+.+......+. .....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~-------------------------------------- 52 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-AFFSQ-------------------------------------- 52 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC-SEEEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee-EEEEE--------------------------------------
Confidence 467999999999999999999988753221111110 00000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH--
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD-- 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~-- 194 (368)
.+.+ ......+.|+||||.... ..+...|++.+|++|+|++. +....-..
T Consensus 53 -------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~ 104 (181)
T 2efe_B 53 -------------TLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVFDV-TNQASFERAK 104 (181)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEEEEEET-TCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEEEEEEC-CCHHHHHHHH
Confidence 0001 111236899999996432 33456788999987766654 33222122
Q ss_pred -HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 -AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 -~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+......+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 222233333347889999999999754
No 79
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=1.9e-14 Score=119.60 Aligned_cols=117 Identities=18% Similarity=0.247 Sum_probs=70.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|++|+|||||+|+|++..+.+......+... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~-~~~--------------------------------------- 43 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF-LTQ--------------------------------------- 43 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE-EEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEE---------------------------------------
Confidence 4699999999999999999998875322111111000 000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH--
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA-- 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~-- 195 (368)
.+.+ ......+.++||||.... ..+...|++++|++++|++..+ .......
T Consensus 44 ------------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~ 96 (170)
T 1ek0_A 44 ------------RVTI-NEHTVKFEIWDTAGQERF-------------ASLAPXYYRNAQAALVVYDVTK-PQSFIKARH 96 (170)
T ss_dssp ------------EEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTC-HHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCChhh-------------hhhhhhhhccCcEEEEEEecCC-hHHHHHHHH
Confidence 0001 112236899999996432 3346788999998776665433 2212222
Q ss_pred -HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 -VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 -~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
...+......+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 97 WVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 22223333457899999999999854
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=1.6e-14 Score=120.40 Aligned_cols=117 Identities=22% Similarity=0.183 Sum_probs=69.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|++|+|||||+|+|++..+.+. ..+ |........
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~-t~~~~~~~~-------------------------------------- 43 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES-YIP-TVEDTYRQV-------------------------------------- 43 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS-CCC-CSCEEEEEE--------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCC-CccccEEEE--------------------------------------
Confidence 5799999999999999999999775221 111 111100000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSDA 195 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~~ 195 (368)
+ ........+.++||||.... ..+...|+..+|++++|++..+.. +. ...+
T Consensus 44 -------------~-~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 96 (172)
T 2erx_A 44 -------------I-SCDKSICTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPI 96 (172)
T ss_dssp -------------E-EETTEEEEEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHH
T ss_pred -------------E-EECCEEEEEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHH
Confidence 0 00112236889999997541 455677888999887766544321 11 1122
Q ss_pred HHHHHhhCC--CCCceEEeeccCcccCC
Q 017631 196 VKLSREVDP--TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~--~~~~~i~VltK~D~~~~ 221 (368)
...+..... .+.|+++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 97 YEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred HHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 222333221 36899999999999754
No 81
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=4.9e-14 Score=120.16 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+......+ ......
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~-------------------------------------- 55 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVK-------------------------------------- 55 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EEEEEE--------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eEEEEE--------------------------------------
Confidence 46899999999999999999999875322111111 000000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.+.+ ......+.|+||||..... .+...|++.+|++|+|++..+ ........
T Consensus 56 -------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~ 107 (195)
T 1x3s_A 56 -------------TISV-DGNKAKLAIWDTAGQERFR-------------TLTPSYYRGAQGVILVYDVTR-RDTFVKLD 107 (195)
T ss_dssp -------------EEEE-TTEEEEEEEEEECSSGGGC-------------CSHHHHHTTCCEEEEEEETTC-HHHHHTHH
T ss_pred -------------EEEE-CCeEEEEEEEeCCCchhhh-------------hhhHHHhccCCEEEEEEECcC-HHHHHHHH
Confidence 0001 1122468999999975422 235678899997776665433 21112222
Q ss_pred HHHHhhC----CCCCceEEeeccCcccC
Q 017631 197 KLSREVD----PTGERTFGVLTKLDLMD 220 (368)
Q Consensus 197 ~l~~~~~----~~~~~~i~VltK~D~~~ 220 (368)
.++..+. ....|+++|+||+|+..
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 2333333 24688999999999954
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.52 E-value=2.4e-14 Score=123.48 Aligned_cols=119 Identities=16% Similarity=0.291 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+......+.......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~------------------------------------- 49 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------------------------------------- 49 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEE-------------------------------------
Confidence 4578999999999999999999998753221111111010000
Q ss_pred hhhCCCCCCCCCceEEEEec-CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-
Q 017631 116 RVTGKSKQISPVPIHLSIYS-PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT- 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~-~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~- 192 (368)
+.. .....+.||||||..... .+...|++++|++|+|++..+.. +..
T Consensus 50 -----------------~~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 99 (207)
T 1vg8_A 50 -----------------VMVDDRLVTMQIWDTAGQERFQ-------------SLGVAFYRGADCCVLVFDVTAPNTFKTL 99 (207)
T ss_dssp -----------------EESSSCEEEEEEEEECSSGGGS-------------CSCCGGGTTCSEEEEEEETTCHHHHHTH
T ss_pred -----------------EEECCEEEEEEEEeCCCcHHHH-------------HhHHHHHhCCcEEEEEEECCCHHHHHHH
Confidence 111 122468999999975432 22456889999877666543321 101
Q ss_pred hHHHH-HHHhhC---CCCCceEEeeccCcccCC
Q 017631 193 SDAVK-LSREVD---PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 ~~~~~-l~~~~~---~~~~~~i~VltK~D~~~~ 221 (368)
..+.. +..... ..+.|+++|+||+|+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 100 DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 11222 222221 146799999999999843
No 83
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=123.36 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=82.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+......+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 63 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFG---------------------------------------- 63 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeE----------------------------------------
Confidence 3568999999999999999999998752221111110000
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch-
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~- 193 (368)
...+... ....+.|+||||.... ..+...|++.+|++|+|++..+. ....
T Consensus 64 --------------~~~~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~ 115 (200)
T 2o52_A 64 --------------SRVVNVGGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSR-ETYNS 115 (200)
T ss_dssp --------------EEEEEETTEEEEEEEECCTTHHHH-------------SCCCHHHHTTCSEEEEEEETTCH-HHHHT
T ss_pred --------------EEEEEECCeeeEEEEEcCCCcHhH-------------HHHHHHHhccCCEEEEEEECcCH-HHHHH
Confidence 0001111 1247899999996432 23356788999988776654332 1111
Q ss_pred --HHHHHHHhhCCCCCceEEeeccCcccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 194 --DAVKLSREVDPTGERTFGVLTKLDLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 194 --~~~~l~~~~~~~~~~~i~VltK~D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
.+...+......+.|+++|+||+|+..... +...+.. .....++.+...++.++...+..+..
T Consensus 116 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 116 LAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ----ENELMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222223333445789999999999974322 1222221 12234555655555555444444433
No 84
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=121.77 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=46.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+.|+||||... +..+...|++.+|++|+|++..+.. +.. ..+...+......+.|+++|+||+
T Consensus 78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 144 (201)
T 2hup_A 78 VKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144 (201)
T ss_dssp EEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 4789999999743 1556788999999887766543321 111 122333333344578999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 145 Dl~~~ 149 (201)
T 2hup_A 145 DLSEL 149 (201)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 99753
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.51 E-value=3.8e-14 Score=121.33 Aligned_cols=116 Identities=12% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..++|+|+|.+|+|||||+|+|++..+..+...++.. . ...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~-~~~------------------------------------- 56 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-Y-NVE------------------------------------- 56 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-E-EEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-e-eEE-------------------------------------
Confidence 5678999999999999999999998863322111111 1 000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.+ ......+.||||||.... ..+...|++.+|++|+|++..+.. .-...
T Consensus 57 ----------------~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~ 105 (199)
T 4bas_A 57 ----------------TF-EKGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSDHL-RLCVV 105 (199)
T ss_dssp ----------------EE-EETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTCGG-GHHHH
T ss_pred ----------------EE-EeCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCcHH-HHHHH
Confidence 01 123347899999998542 334568899999887766554322 11222
Q ss_pred HHHHHhhCC-----------CCCceEEeeccCcccCC
Q 017631 196 VKLSREVDP-----------TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~-----------~~~~~i~VltK~D~~~~ 221 (368)
...+..+.. .+.|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 222222222 27899999999999865
No 86
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.51 E-value=4.6e-14 Score=119.81 Aligned_cols=123 Identities=21% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
+++|+|+|++|+|||||+|+|++..+ +.+..+ +|..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 47899999999999999999999875 332221 12111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcC----CCeEEEEEeeCCCccc
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEK----PNCLILAITPANQDLA 191 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~iil~v~~~~~~~~ 191 (368)
..+.+ ..+.++||||+...... +....+.+..+...|+.. ++.++ .|.+......
T Consensus 39 -------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~d~~s~~~ 97 (190)
T 2cxx_A 39 -------------IEIEW-----KNHKIIDMPGFGFMMGL--PKEVQERIKDEIVHFIEDNAKNIDVAV-LVVDGKAAPE 97 (190)
T ss_dssp -------------EEEEE-----TTEEEEECCCBSCCTTS--CHHHHHHHHHHHHHHHHHHGGGCCEEE-EEEETTHHHH
T ss_pred -------------EEEec-----CCEEEEECCCccccccC--CHHHHHHHHHHHHHHHHhhhccCCEEE-EEEcchhhhh
Confidence 11111 17899999997653321 222345566666777654 44333 3444332100
Q ss_pred c-hHH---------HHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 192 T-SDA---------VKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 192 ~-~~~---------~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
. ..+ ..+...+...+.|+++|+||+|+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 98 IIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 0 111 113333444578999999999998653
No 87
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.51 E-value=3.1e-14 Score=118.34 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=70.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+.+.... |. .+.....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~-~~~~~~~------------------------------------ 46 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--TI-GAAFLTQ------------------------------------ 46 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CS-SEEEEEE------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--cc-ceEEEEE------------------------------------
Confidence 35799999999999999999998765322111 10 0000000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH--
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD-- 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~-- 194 (368)
.+.+ ......+.++||||.... ..+...|+..+|++++|++..+ ...-..
T Consensus 47 -------------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 98 (170)
T 1r2q_A 47 -------------TVCL-DDTTVKFEIWDTAGQERY-------------HSLAPMYYRGAQAAIVVYDITN-EESFARAK 98 (170)
T ss_dssp -------------EEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTC-HHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEeCCCcHHh-------------hhhhHHhccCCCEEEEEEECCC-HHHHHHHH
Confidence 0001 112346889999997542 3446778999998776665433 211122
Q ss_pred -HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 -AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 -~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+........|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 99 NWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 222222333446789999999999753
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=120.61 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++...++....++. .. ...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~-~~-~~~------------------------------------- 60 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI-GF-SIE------------------------------------- 60 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCS-SE-EEE-------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcc-ce-eEE-------------------------------------
Confidence 457899999999999999999999873333222111 11 000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.+. .+...+.|+||||.... ..+...|+.++|++++|++..+ ...-...
T Consensus 61 ----------------~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~ 109 (190)
T 2h57_A 61 ----------------KFK-SSSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVIDSSD-RLRMVVA 109 (190)
T ss_dssp ----------------EEE-CSSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEETTC-HHHHHHH
T ss_pred ----------------EEE-ECCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCC-HHHHHHH
Confidence 011 12357899999996542 3345678999998776665433 2111121
Q ss_pred HH----HHHhhCC--CCCceEEeeccCcccCC
Q 017631 196 VK----LSREVDP--TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~----l~~~~~~--~~~~~i~VltK~D~~~~ 221 (368)
.. +...... .+.|+++|+||+|+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 110 KEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 11 2221111 47899999999999864
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.51 E-value=2.3e-14 Score=118.42 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=69.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+++|.+|+|||||+|+|++..+.+.. .+++.......
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~~~~~~~~~~--------------------------------------- 43 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-DPTIEDSYRKQ--------------------------------------- 43 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEEEE---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-CCccceEEEEE---------------------------------------
Confidence 46999999999999999999988753221 11111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD--- 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~--- 194 (368)
+.+ ......+.++||||.... ..+...|+..+|+++++++..+ ......
T Consensus 44 -------------~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~ 95 (166)
T 2ce2_X 44 -------------VVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINN-TKSFEDIHQ 95 (166)
T ss_dssp -------------EEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTC-HHHHHHHHH
T ss_pred -------------EEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCC-HHHHHHHHH
Confidence 001 112236889999997541 3345678889998776665432 221122
Q ss_pred HHHHH-HhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLS-REVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~-~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+ ......+.|+++|+||+|+.+.
T Consensus 96 ~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 96 YREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 22222 2223347899999999999863
No 90
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.51 E-value=3.3e-14 Score=137.14 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..++|+++|++|+|||||+|+|+|..+..++.. .+|+...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~--------------------------------------- 214 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--------------------------------------- 214 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------C---------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee---------------------------------------
Confidence 457999999999999999999999875322221 1111110
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHH-HHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIET-MVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
...+.. +...+.||||||+.+....... + +.+.. ....+++.+|++++|+ ++......+
T Consensus 215 ---------------~~~~~~-~~~~~~l~DT~G~~~~~~~~~~--~-e~~~~~~~~~~~~~ad~~llv~-D~~~~~s~~ 274 (436)
T 2hjg_A 215 ---------------DTSFTY-NQQEFVIVDTAGMRKKGKVYET--T-EKYSVLRALKAIDRSEVVAVVL-DGEEGIIEQ 274 (436)
T ss_dssp ---------------CEEEEE-TTEEEEETTHHHHTCBTTBCCC--C-SHHHHHHHHHHHHHCSEEEEEE-ETTTCCCHH
T ss_pred ---------------EEEEEE-CCeEEEEEECCCcCcCccccch--H-HHHHHHHHHHHHHhCCEEEEEE-cCCcCCcHH
Confidence 001111 2235899999998764432111 1 11122 2346788999776655 444444444
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+ ..++..+...+.++++|+||+|+.+..
T Consensus 275 ~-~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 275 D-KRIAGYAHEAGKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp H-HHHHHHHHHTTCEEEEEEECGGGSCCC
T ss_pred H-HHHHHHHHHcCCcEEEEEECccCCCcc
Confidence 4 345555555689999999999998653
No 91
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.50 E-value=2.8e-14 Score=136.09 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=89.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..+.|+|+|+.|+|||||+|+|++.++.+.+... +|..+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~---------------------------------------- 72 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDP---------------------------------------- 72 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCC----------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeee----------------------------------------
Confidence 4678999999999999999999998763322211 11111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
....+.......+.||||||+.+....+... ...+..++..+|++++|++ +.. . ..
T Consensus 73 --------------~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~------~~~~~~~l~~aD~vllVvD-~~~--~-~~ 128 (423)
T 3qq5_A 73 --------------VYKSMELHPIGPVTLVDTPGLDDVGELGRLR------VEKARRVFYRADCGILVTD-SAP--T-PY 128 (423)
T ss_dssp --------------CEEEEEETTTEEEEEEECSSTTCCCTTCCCC------HHHHHHHHTSCSEEEEECS-SSC--C-HH
T ss_pred --------------EEEEEEECCCCeEEEEECcCCCcccchhHHH------HHHHHHHHhcCCEEEEEEe-CCC--h-HH
Confidence 1111222233378999999998754332211 3346778999997776664 322 2 22
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
...++..+...+.|+++|+||+|+.+.... +..+.........++.++..++.++++..+.+..
T Consensus 129 ~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 129 EDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp HHHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 233445555557999999999999866442 2221112223345555555555555444444433
No 92
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=122.84 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+. ..+.....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~----------------------------------------- 64 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFREN-ISATLGVD----------------------------------------- 64 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCCccce-----------------------------------------
Confidence 357899999999999999999998875211 10000000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-ch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~ 193 (368)
.....+.+ ......+.|+||||... +..+...|++.+|++|+|++..+.. +. ..
T Consensus 65 ----------~~~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 65 ----------FQMKTLIV-DGERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120 (199)
T ss_dssp ----------CEEEEEEE-TTEEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ----------eEEEEEEE-CCEEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHH
Confidence 00000111 11224689999999643 1456778899999887766543321 11 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCccc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.+...+......+.|+++|+||+|+.
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccc
Confidence 23333444444578999999999997
No 93
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=5.1e-14 Score=120.58 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+.. .++........
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~------------------------------------- 68 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DPTLESTYRHQ------------------------------------- 68 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-CCCCCceEEEE-------------------------------------
Confidence 3468999999999999999999998752221 11111110000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-h
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-S 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~ 193 (368)
+ ........+.|+||||... ..+...|+..+|++++|++..+.. +.. .
T Consensus 69 ---------------~-~~~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 118 (196)
T 2atv_A 69 ---------------A-TIDDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVL 118 (196)
T ss_dssp ---------------E-EETTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ---------------E-EECCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHH
Confidence 0 0111224688999999865 234567888999887766544321 111 1
Q ss_pred HHHHHHHh-hCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSRE-VDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~-~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+.. ....+.|+++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 22222222 33457899999999999753
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.49 E-value=8.7e-13 Score=112.10 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-.+|+|+|.+|+|||||+|+|++..+. ....+ |.... ..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~-~~------------------------------------- 60 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP-TVGFN-MR------------------------------------- 60 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC-CCSEE-EE-------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC-CCcee-EE-------------------------------------
Confidence 3467999999999999999999987752 11111 11000 00
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.+. .....+.|+||||... +..+...|+.++|++|+|++..+. ..-...
T Consensus 61 ----------------~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~-~s~~~~ 109 (188)
T 1zd9_A 61 ----------------KIT-KGNVTIKLWDIGGQPR-------------FRSMWERYCRGVSAIVYMVDAADQ-EKIEAS 109 (188)
T ss_dssp ----------------EEE-ETTEEEEEEEECCSHH-------------HHTTHHHHHTTCSEEEEEEETTCG-GGHHHH
T ss_pred ----------------EEE-eCCEEEEEEECCCCHh-------------HHHHHHHHHccCCEEEEEEECCCH-HHHHHH
Confidence 011 1234789999999743 244567889999988776654432 112222
Q ss_pred HHHHHhh-C---CCCCceEEeeccCcccCC
Q 017631 196 VKLSREV-D---PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~-~---~~~~~~i~VltK~D~~~~ 221 (368)
...+..+ . ..+.|+++|+||+|+...
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 110 KNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 2222222 2 257899999999999864
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=7.3e-14 Score=118.60 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+... .+ |..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~-t~~------------------------------------------ 49 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT--SP-TIG------------------------------------------ 49 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEE--EC-CSC------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcC--cC-CCc------------------------------------------
Confidence 457999999999999999999998765211 00 000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+. ...+.+ +...+.++||||.... ..+...|++++|++++|++..+.. .-...
T Consensus 50 --------~~--~~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 102 (187)
T 1zj6_A 50 --------SN--VEEIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRE-RISVT 102 (187)
T ss_dssp --------SS--CEEEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTT-THHHH
T ss_pred --------cc--eEEEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHH-HHHHH
Confidence 00 011111 2357899999998542 234567889999887766554321 12222
Q ss_pred HHHHHhh-C---CCCCceEEeeccCcccCC
Q 017631 196 VKLSREV-D---PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~-~---~~~~~~i~VltK~D~~~~ 221 (368)
...+..+ . ..+.|+++|+||+|+...
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 103 REELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 2222222 2 257899999999999864
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.49 E-value=5.5e-14 Score=119.51 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|.+..+.+. .+ |...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~-t~~~----------------------------------------- 56 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT--VP-TVGV----------------------------------------- 56 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE--CS-STTC-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc--CC-CCce-----------------------------------------
Confidence 357899999999999999999988765211 01 1000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.... +.. ....+.++||||...... +...|++++|++++|++..+. ..-...
T Consensus 57 -----------~~~~--~~~-~~~~~~~~Dt~G~~~~~~-------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~ 108 (189)
T 2x77_A 57 -----------NLET--LQY-KNISFEVWDLGGQTGVRP-------------YWRCYFSDTDAVIYVVDSTDR-DRMGVA 108 (189)
T ss_dssp -----------CEEE--EEE-TTEEEEEEEECCSSSSCC-------------CCSSSSTTCCEEEEEEETTCC-TTHHHH
T ss_pred -----------EEEE--EEE-CCEEEEEEECCCCHhHHH-------------HHHHHhhcCCEEEEEEeCCCH-HHHHHH
Confidence 0001 111 235789999999854322 235678899988776654432 112222
Q ss_pred HHHHHh-h---CCCCCceEEeeccCcccCC
Q 017631 196 VKLSRE-V---DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~-~---~~~~~~~i~VltK~D~~~~ 221 (368)
...+.. + ...+.|+++|+||+|+...
T Consensus 109 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 109 KHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 222222 2 2247899999999999865
No 97
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.49 E-value=1.2e-14 Score=120.96 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=69.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcc-cccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGI-VTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~-~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
+.|+++|++|+|||||+|+|+|..+ +.+..+ .|..+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~------------------------------------------ 40 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEK------------------------------------------ 40 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCC------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceee------------------------------------------
Confidence 5799999999999999999999764 222111 01100
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcccchH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDLATSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~~~~~ 194 (368)
.... +.. +...+.++||||........ ....+...|+. ++|+++++++..+. ..
T Consensus 41 ----------~~~~--~~~-~~~~l~i~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~v~D~~~~----~~ 96 (165)
T 2wji_A 41 ----------KEGE--FEY-NGEKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPDLVVNIVDATAL----ER 96 (165)
T ss_dssp ----------CEEE--EEE-TTEEEEEEECCCCSCSSSSS-------HHHHHHHHHHHHHCCSEEEEEEETTCH----HH
T ss_pred ----------eEEE--EEE-CCcEEEEEECCCcccCCCcc-------hhHHHHHHHHhcCCCCEEEEEecCCch----hH
Confidence 0001 111 22468999999987643221 11345566664 89977766554331 12
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...++..+...+.|+++|.||+|+..
T Consensus 97 ~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 97 NLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred hHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 22233333335789999999999863
No 98
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.49 E-value=1e-13 Score=117.40 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++.. +....++.. .. ..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~-~~-~~------------------------------------- 55 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISPTLG-FN-IK------------------------------------- 55 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCCSS-EE-EE-------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccccCc-cc-eE-------------------------------------
Confidence 45789999999999999999999876 222111111 10 00
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
. +.. +...+.++||||... ...+...|++++|++++|++..+ ...-...
T Consensus 56 --------------~--~~~-~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~ 104 (186)
T 1ksh_A 56 --------------T--LEH-RGFKLNIWDVGGQKS-------------LRSYWRNYFESTDGLIWVVDSAD-RQRMQDC 104 (186)
T ss_dssp --------------E--EEE-TTEEEEEEEECCSHH-------------HHTTGGGGCTTCSEEEEEEETTC-GGGHHHH
T ss_pred --------------E--EEE-CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEECcC-HHHHHHH
Confidence 0 111 235789999999843 24456788999998876665433 2222222
Q ss_pred HHHHHhh----CCCCCceEEeeccCcccCC
Q 017631 196 VKLSREV----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~----~~~~~~~i~VltK~D~~~~ 221 (368)
...+..+ ...+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 105 QRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 2222222 2246899999999999865
No 99
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.48 E-value=1.4e-14 Score=122.50 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=37.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.|+||||.... ..+...|++++|++|+|++..+. ..-.. +...+......+.|+++|+||
T Consensus 57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (183)
T 2fu5_C 57 IKLQIWDTAGQERF-------------RTITTAYYRGAMGIMLVYDITNE-KSFDNIRNWIRNIEEHASADVEKMILGNK 122 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEcCCCChhh-------------hhhHHHHHhcCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 46899999997431 34456788999988766654332 11122 222233333457899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 123 ~Dl~~~ 128 (183)
T 2fu5_C 123 CDVNDK 128 (183)
T ss_dssp --CCSC
T ss_pred ccCCcc
Confidence 999754
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=8.5e-14 Score=117.48 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-.+|+|+|++|+|||||+|+|++..+.+..... . .
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~--~-~----------------------------------------- 52 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTI--G-F----------------------------------------- 52 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSST--T-C-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcC--c-c-----------------------------------------
Confidence 3578999999999999999999987641111100 0 0
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
....+.+ ....+.++||||..... .+...|+.++|++++|++..+. ..-...
T Consensus 53 -----------~~~~~~~---~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~-~s~~~~ 104 (183)
T 1moz_A 53 -----------NVETLSY---KNLKLNVWDLGGQTSIR-------------PYWRCYYADTAAVIFVVDSTDK-DRMSTA 104 (183)
T ss_dssp -----------CEEEEEE---TTEEEEEEEEC----CC-------------TTGGGTTTTEEEEEEEEETTCT-TTHHHH
T ss_pred -----------ceEEEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 0001111 23578999999986522 2346788999977766654332 222222
Q ss_pred HHHHHhhC----CCCCceEEeeccCcccCC
Q 017631 196 VKLSREVD----PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~----~~~~~~i~VltK~D~~~~ 221 (368)
...+..+. ..+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 105 SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 22333322 357899999999999764
No 101
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.48 E-value=9.5e-14 Score=116.80 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+.+......+......
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 48 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK-------------------------------------- 48 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEE--------------------------------------
Confidence 457899999999999999999999875221111111111000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
.+.+.+.....+.|+||||... +..+...|++.+|++|+|++..+. ....
T Consensus 49 --------------~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 100 (182)
T 1ky3_A 49 --------------EVTVDGDKVATMQVWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVTNA-SSFENI 100 (182)
T ss_dssp --------------EECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCH-HHHHTH
T ss_pred --------------EEEEcCCcEEEEEEEECCCChH-------------hhhhhHHHhhcCCEEEEEEECCCh-HHHHHH
Confidence 0011112234689999999533 245567889999988776654332 1111
Q ss_pred -HHHHHHHhh----CCCCCceEEeeccCcccCCcc-----hHHHhhhCCCccCCCCeEEEEeCCccccccCccH
Q 017631 194 -DAVKLSREV----DPTGERTFGVLTKLDLMDKGT-----NALDILEGRSYPLQHPWVGIVNRSQADINKNVDM 257 (368)
Q Consensus 194 -~~~~l~~~~----~~~~~~~i~VltK~D~~~~~~-----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~ 257 (368)
.+...+... ...+.|+++|+||+|+..... +...+.. ......++.+...++.+++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 101 KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBSHHHHHHH
T ss_pred HHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCCCeEEEEecCCCCCHHHHHHH
Confidence 122212221 125689999999999964321 1222221 012345666666655554443333
No 102
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.48 E-value=7.5e-14 Score=119.87 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.....|+|+|++|+|||||+|+|++..+ +....+++.......+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~----------------------------------- 61 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVV----------------------------------- 61 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEE-----------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEE-----------------------------------
Confidence 3567899999999999999999999874 3322222221111010
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+ ......+.|+||||..... .+...|+.++|++|+|++..+. .....
T Consensus 62 -----------------~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~-~s~~~ 109 (201)
T 2q3h_A 62 -----------------SV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSP-SSFQN 109 (201)
T ss_dssp -----------------EE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCH-HHHHH
T ss_pred -----------------EE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCH-HHHHH
Confidence 01 1112357799999985532 2245688999987766654332 11111
Q ss_pred ----HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 ----AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ----~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+....+ +.|+++|+||+|+...
T Consensus 110 ~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 110 VSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 2222333333 7899999999999854
No 103
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.47 E-value=3.6e-14 Score=122.26 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHHHHHhhCC---CCCceEEe
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVKLSREVDP---TGERTFGV 212 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~l~~~~~~---~~~~~i~V 212 (368)
..+.|+||||... +..+...|++++|++|+|++..+ ...-.. +...+....+ .+.|+++|
T Consensus 73 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSDL-------------YKEQISQYWNGVYYAILVFDVSS-MESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTHH-------------HHHHHSTTCCCCCEEEEEEETTC-HHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHhhCcEEEEEEECCC-HHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 4789999999843 25667889999998776665433 222122 2222333333 57899999
Q ss_pred eccCcccC
Q 017631 213 LTKLDLMD 220 (368)
Q Consensus 213 ltK~D~~~ 220 (368)
+||+|+.+
T Consensus 139 ~nK~Dl~~ 146 (208)
T 2yc2_C 139 ANKTDLPP 146 (208)
T ss_dssp EECC----
T ss_pred EECcccch
Confidence 99999986
No 104
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.47 E-value=5.6e-14 Score=117.95 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
..+|+|+|++|+|||||+|+|++..+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 46899999999999999999998765
No 105
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.47 E-value=3.1e-13 Score=126.86 Aligned_cols=126 Identities=20% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccC-cccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGS-GIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEE 113 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 113 (368)
...+.|+++|.+|+|||||+|+|+|..+ ..+. ...|..+....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~----------------------------------- 208 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQ----------------------------------- 208 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEE-----------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEE-----------------------------------
Confidence 3578999999999999999999999873 2222 12222221111
Q ss_pred HhhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc
Q 017631 114 TDRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT 192 (368)
Q Consensus 114 ~~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~ 192 (368)
+.. ....+.++||||+........+. .. ...+..+...+|.+++|++..... +..
T Consensus 209 -------------------~~~-~~~~~~l~Dt~G~~~~~~~~~~~-~~---~~~~~~~~~~ad~illV~D~s~~~~~~~ 264 (357)
T 2e87_A 209 -------------------FED-GYFRYQIIDTPGLLDRPISERNE-IE---KQAILALRYLGNLIIYIFDPSEHCGFPL 264 (357)
T ss_dssp -------------------EEE-TTEEEEEEECTTTSSSCSTTSCH-HH---HHHHHGGGGTCSEEEEEECTTCTTSSCH
T ss_pred -------------------EEe-cCceEEEEeCCCccccchhhhhH-HH---HHHHHHHHhcCCEEEEEEeCCccccCCH
Confidence 111 23468999999997643321111 11 123345566799777666533321 112
Q ss_pred hHHHHHHH---hhCCCCCceEEeeccCcccCC
Q 017631 193 SDAVKLSR---EVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 ~~~~~l~~---~~~~~~~~~i~VltK~D~~~~ 221 (368)
.....+.. .... +.|+++|+||+|+...
T Consensus 265 ~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 265 EEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 22222322 2222 7899999999999854
No 106
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.47 E-value=9.4e-14 Score=118.10 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=63.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|.+|+|||||+|+|++..+.+.. ..++.......+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~-------------------------------------- 62 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQV-------------------------------------- 62 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEEEEE--------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCcccc-CCccceEEEEEE--------------------------------------
Confidence 57999999999999999999987752221 111111100000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD--- 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~--- 194 (368)
.+ ......+.||||||... +..+...|+..+|++++|++..+. .....
T Consensus 63 --------------~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~ 113 (190)
T 3con_A 63 --------------VI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNS-KSFADINL 113 (190)
T ss_dssp --------------EE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCH-HHHHHHHH
T ss_pred --------------EE-CCEEEEEEEEECCChHH-------------HHHHHHHhhCcCCEEEEEEECcCH-HHHHHHHH
Confidence 01 11123588999999643 144567889999988766544332 21122
Q ss_pred HHHHHHh-hCCCCCceEEeeccCcccC
Q 017631 195 AVKLSRE-VDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~-~~~~~~~~i~VltK~D~~~ 220 (368)
+...+.. ....+.|+++|+||+|+.+
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 2222222 2234689999999999975
No 107
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.7e-14 Score=122.10 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+.+......+..... .
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~-~------------------------------------- 53 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFAT-R------------------------------------- 53 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEE-E-------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEE-E-------------------------------------
Confidence 35789999999999999999999987522211111100000 0
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH-
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD- 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~- 194 (368)
.+.+ ......+.||||||.... ..+...|++.+|++|+|++..+ ......
T Consensus 54 --------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~D~~~-~~s~~~~ 104 (223)
T 3cpj_B 54 --------------TLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVYDISK-SSSYENC 104 (223)
T ss_dssp --------------EEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEEC-CC-HHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEEeCCC-HHHHHHH
Confidence 0111 111236899999996542 2235678899998776654433 222122
Q ss_pred --HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 --AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 --~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
++..+......+.|+++|+||+|+...
T Consensus 105 ~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 105 NHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp HHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 222333333457899999999999753
No 108
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=116.78 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=43.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chHHHHHHHhhC-CCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSDAVKLSREVD-PTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~~~~l~~~~~-~~~~~~i~VltK 215 (368)
..+.++||||..... ..+...|++.+|++|+|++..+.. +. ...+...+.... ..+.|+++|.||
T Consensus 72 ~~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 357899999985411 225567788999887766543321 11 112222222222 246899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 140 ~Dl~~~ 145 (195)
T 3cbq_A 140 SDLARS 145 (195)
T ss_dssp TTCTTT
T ss_pred hhcccc
Confidence 999754
No 109
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.46 E-value=2.1e-13 Score=123.10 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.-++|+|+|.+|+|||||+|+|+|..+.+++.. .+|..+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 81 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS------------------------------------ 81 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE------------------------------------
Confidence 347899999999999999999999887554432 2222222111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh--cCCCeEEEEEeeCCCcccc
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI--EKPNCLILAITPANQDLAT 192 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iil~v~~~~~~~~~ 192 (368)
+. .....++||||||+.+.... . +.+...+..|+ ..+|++++|+......+..
T Consensus 82 ------------------~~-~~~~~l~iiDTpG~~~~~~~--~----~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~ 136 (270)
T 1h65_A 82 ------------------RS-RAGFTLNIIDTPGLIEGGYI--N----DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDN 136 (270)
T ss_dssp ------------------EE-ETTEEEEEEECCCSEETTEE--C----HHHHHHHHHHTTTCEECEEEEEEESSCCCCCH
T ss_pred ------------------Ee-eCCeEEEEEECCCCCCCccc--h----HHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCH
Confidence 11 12346999999999774322 1 11223334453 4789777664332223322
Q ss_pred h--HHHHHHHhhCCC--CCceEEeeccCcccCCc
Q 017631 193 S--DAVKLSREVDPT--GERTFGVLTKLDLMDKG 222 (368)
Q Consensus 193 ~--~~~~l~~~~~~~--~~~~i~VltK~D~~~~~ 222 (368)
. .+...+...... ..|+++|+||+|+.++.
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 137 LDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2 222222222121 26899999999998653
No 110
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.45 E-value=1.5e-13 Score=116.03 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+-... .|.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~t~------------------------------------------- 53 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS---PTI------------------------------------------- 53 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEE---CCS-------------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccC---CcC-------------------------------------------
Confidence 3467999999999999999999998751000 000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
++. ...+.+ +...+.|+||||.... ..+...|++++|++++|++..+. ..-...
T Consensus 54 -------~~~--~~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~-~s~~~~ 107 (181)
T 2h17_A 54 -------GSN--VEEIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDR-ERISVT 107 (181)
T ss_dssp -------SSS--CEEEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCT-TTHHHH
T ss_pred -------cee--eEEEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 000 011112 2357899999998542 23356789999987766654432 222222
Q ss_pred HHHHHh-hC---CCCCceEEeeccCcccCC
Q 017631 196 VKLSRE-VD---PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~-~~---~~~~~~i~VltK~D~~~~ 221 (368)
...+.. +. ..+.|+++|+||+|+...
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 222222 22 357899999999999764
No 111
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.45 E-value=6.6e-14 Score=119.59 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+ +....+++........
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~------------------------------------- 64 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVM------------------------------------- 64 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEE-------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEE-------------------------------------
Confidence 46799999999999999999999875 3222221111110000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
........+.|+||||.... ..+...|++++|++|+|++..+. ..-.
T Consensus 65 ----------------~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 114 (194)
T 3reg_A 65 ----------------KYKNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNNR-TSFDNIS 114 (194)
T ss_dssp ----------------EETTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHHH
T ss_pred ----------------EECCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCCH-HHHHHHH
Confidence 01112235789999996442 23456789999988776654332 1111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+.... ...|+++|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 1222333332 36899999999999753
No 112
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.45 E-value=5.8e-13 Score=113.44 Aligned_cols=119 Identities=20% Similarity=0.306 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..+.|+|+|.+|+|||||+|+|++..+.+. ..+..|+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~-------------------------------------- 85 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSA-------------------------------------- 85 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCcee--------------------------------------
Confidence 568999999999999999999999875221 111111000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
. ......+.+|||||....... . .......+..+|++|+|++...........
T Consensus 86 -----------------~-~~~~~~~~l~Dt~G~~~~~~~-----~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 138 (193)
T 2ged_A 86 -----------------A-DYDGSGVTLVDFPGHVKLRYK-----L----SDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 138 (193)
T ss_dssp -------------------CCCCTTCSEEEETTCCBSSCC-----H----HHHHHHHGGGEEEEEEEEETTCCHHHHHHH
T ss_pred -----------------e-eecCCeEEEEECCCCchHHHH-----H----HHHHHhhcccCCEEEEEEECCCCchhHHHH
Confidence 0 002347899999998764322 1 333344556689877766544121111111
Q ss_pred HH----HHHhh---CCCCCceEEeeccCcccCCc
Q 017631 196 VK----LSREV---DPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 196 ~~----l~~~~---~~~~~~~i~VltK~D~~~~~ 222 (368)
.. +.... ...+.|+++|+||+|+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 139 AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 11 11111 33578999999999998653
No 113
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.45 E-value=3.2e-13 Score=114.21 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..+.|+++|++|+|||||+|+|++..+.... .|... ..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~---~t~g~-~~-------------------------------------- 52 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHIT---PTQGF-NI-------------------------------------- 52 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEE---EETTE-EE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCccc---CcCCe-EE--------------------------------------
Confidence 4578999999999999999999987641110 00000 00
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.. +.. +...+.++||||... +..+...|+..+|++++|++..+.. .-...
T Consensus 53 -------------~~--~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~ 102 (181)
T 1fzq_A 53 -------------KS--VQS-QGFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSADRK-RFEET 102 (181)
T ss_dssp -------------EE--EEE-TTEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTCGG-GHHHH
T ss_pred -------------EE--EEE-CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcCHH-HHHHH
Confidence 00 111 134789999999743 1455678899999887766544321 11222
Q ss_pred HHHHHhh----CCCCCceEEeeccCcccCC
Q 017631 196 VKLSREV----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~----~~~~~~~i~VltK~D~~~~ 221 (368)
...+..+ ...+.|+++|+||+|+...
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 2222222 2356899999999999864
No 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.44 E-value=3.7e-13 Score=116.76 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..+.|+|+|++|+|||||+|+|++..+.+... +.+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~----------------------------------------- 43 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSS----------------------------------------- 43 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-Ccceee-----------------------------------------
Confidence 45899999999999999999999887522211 111000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHH-HHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIET-MVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
..+.+.......+.||||||... +.. +...|++.+|++|+|++..+..-....
T Consensus 44 -------------~~~~~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 44 -------------AIYKVNNNRGNSLTLIDLPGHES-------------LRFQLLDRFKSSARAVVFVVDSAAFQREVKD 97 (214)
T ss_dssp -------------EEEECSSTTCCEEEEEECCCCHH-------------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHH
T ss_pred -------------EEEEecCCCccEEEEEECCCChh-------------HHHHHHHHHHhhCCEEEEEEECCCcCHHHHH
Confidence 00111111135789999999843 133 677889999988777655331111111
Q ss_pred HHHHHH----h--hCCCCCceEEeeccCcccCCc
Q 017631 195 AVKLSR----E--VDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 195 ~~~l~~----~--~~~~~~~~i~VltK~D~~~~~ 222 (368)
....+. . ....+.|+++|+||+|+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 111111 1 234468999999999998553
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.44 E-value=1.6e-13 Score=117.15 Aligned_cols=113 Identities=15% Similarity=0.218 Sum_probs=67.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-.+|+|+|++|+|||||+|+|++..+.+. ..|.... .
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~~~---~~t~~~~-~--------------------------------------- 65 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFN-V--------------------------------------- 65 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCEEE---EEETTEE-E---------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcccc---CCcCcee-E---------------------------------------
Confidence 46799999999999999999998775210 0011100 0
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
.. +.. ....+.++||||.... ..+...|+.++|++++|++..+ ...-....
T Consensus 66 ------------~~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~-~~s~~~~~ 116 (192)
T 2b6h_A 66 ------------ET--VEY-KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSND-RERVQESA 116 (192)
T ss_dssp ------------EE--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTC-GGGHHHHH
T ss_pred ------------EE--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCC-HHHHHHHH
Confidence 00 111 2357899999998542 2345678899998876665433 22222222
Q ss_pred HHHHhh----CCCCCceEEeeccCcccCC
Q 017631 197 KLSREV----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~----~~~~~~~i~VltK~D~~~~ 221 (368)
..+..+ ...+.|+++|+||+|+...
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 222222 1246899999999999754
No 116
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.4e-13 Score=127.31 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=76.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
-.++|++||.||+|||||+|+|+|.+....+...||+.|..-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~------------------------------------ 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI------------------------------------ 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE------------------------------------
Confidence 46889999999999999999999988655555567777743222
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
. ....++.|+||||+...+..+. .+ ...+...++++|+++++| +++.+....+.
T Consensus 115 ------------------~-~~~~~i~l~D~pGl~~~a~~~~--~~----g~~~l~~i~~ad~il~vv-D~~~p~~~~~~ 168 (376)
T 4a9a_A 115 ------------------R-YKGAKIQMLDLPGIIDGAKDGR--GR----GKQVIAVARTCNLLFIIL-DVNKPLHHKQI 168 (376)
T ss_dssp ------------------E-ETTEEEEEEECGGGCCC-------CH----HHHHHHHHHHCSEEEEEE-ETTSHHHHHHH
T ss_pred ------------------E-eCCcEEEEEeCCCccCCchhhh--HH----HHHHHHHHHhcCcccccc-ccCccHHHHHH
Confidence 1 1234689999999987654321 12 233456678999666554 55543322221
Q ss_pred H-HHHHhhC--CCCCceEEeeccCccc
Q 017631 196 V-KLSREVD--PTGERTFGVLTKLDLM 219 (368)
Q Consensus 196 ~-~l~~~~~--~~~~~~i~VltK~D~~ 219 (368)
. ..+..++ ...+|.++++||.|..
T Consensus 169 i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 169 IEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1 1122221 2357889999999974
No 117
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=117.64 Aligned_cols=116 Identities=11% Similarity=0.155 Sum_probs=66.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+ +....+++.......
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 61 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSE-------------------------------------- 61 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEE--------------------------------------
Confidence 35799999999999999999998874 222222111110000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV 196 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~ 196 (368)
+ ........+.|+||||..... .+ ..|+..+|++++|++..+. ..-....
T Consensus 62 --------------~-~~~~~~~~l~i~Dt~G~~~~~-------------~~-~~~~~~~~~~ilv~d~~~~-~s~~~~~ 111 (187)
T 3c5c_A 62 --------------E-TVDHQPVHLRVMDTADLDTPR-------------NC-ERYLNWAHAFLVVYSVDSR-QSFDSSS 111 (187)
T ss_dssp --------------E-EETTEEEEEEEEECCC---CC-------------CT-HHHHTTCSEEEEEEETTCH-HHHHHHH
T ss_pred --------------E-EECCEEEEEEEEECCCCCcch-------------hH-HHHHhhCCEEEEEEECCCH-HHHHHHH
Confidence 0 001122368899999975421 11 4588899988776654332 1112211
Q ss_pred HHHHhhC------CCCCceEEeeccCcccCC
Q 017631 197 KLSREVD------PTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 197 ~l~~~~~------~~~~~~i~VltK~D~~~~ 221 (368)
.++..+. ..+.|+++|+||+|+...
T Consensus 112 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 112 SYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 2222221 147899999999999743
No 118
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.44 E-value=9.2e-14 Score=119.55 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=69.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|++|+|||||+|+|++..+ +....+++.......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 65 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIAD--------------------------------------- 65 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCEEE---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEEEE---------------------------------------
Confidence 4699999999999999999998875 222111111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--hH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--SD 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~~ 194 (368)
+.+ ......+.|+||||.... ..+...|+..+|++++|++..+.. +.. ..
T Consensus 66 -------------~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 118 (201)
T 2gco_A 66 -------------IEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 118 (201)
T ss_dssp -------------EEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -------------EEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 001 111236889999997542 223456889999877666443321 111 12
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+....+ +.|+++|+||+|+.+.
T Consensus 119 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 119 WTPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp HHHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 2233333332 6899999999999865
No 119
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.3e-13 Score=117.70 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+ +....+++.......+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~------------------------------------- 59 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSV------------------------------------- 59 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEE-------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEE-------------------------------------
Confidence 35799999999999999999998764 3222222211111010
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch--
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS-- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~-- 193 (368)
.+ ......+.|+||||.... ..+...|++++|++|+|++..+.. +...
T Consensus 60 ---------------~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (194)
T 2atx_A 60 ---------------TV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKE 110 (194)
T ss_dssp ---------------ES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ---------------EE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 00 111236889999997542 233567899999887766543321 1111
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+....+ +.|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 111 EWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp THHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 12223333333 6899999999999864
No 120
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=2.5e-13 Score=116.20 Aligned_cols=119 Identities=23% Similarity=0.203 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+.+. ..+ |...+....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-t~~~~~~~~------------------------------------ 48 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDT-YIP-TIEDTYRQV------------------------------------ 48 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCT-TSC-CCCEEEEEE------------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCc-ccC-ccccceeEE------------------------------------
Confidence 347899999999999999999998765211 111 111100000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-h
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-S 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~ 193 (368)
+ ........+.|+||||.... ..+...|+..+|++++|++..+.. +.. .
T Consensus 49 ---------------~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (199)
T 2gf0_A 49 ---------------I-SCDKSVCTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVFSVTSKQSLEELG 99 (199)
T ss_dssp ---------------E-EETTEEEEEEEEECCGGGSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTH
T ss_pred ---------------E-EECCEEEEEEEEeCCChHHh-------------HHHHHHhhccCCEEEEEEECcCHHHHHHHH
Confidence 0 00112236889999996431 455677888999887666543321 111 1
Q ss_pred HHHHHHHhhCC--CCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDP--TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~--~~~~~i~VltK~D~~~~ 221 (368)
.+...+..+.. .+.|+++|+||+|+.+.
T Consensus 100 ~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 100 PIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 22223333322 35799999999999853
No 121
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.43 E-value=7.5e-14 Score=117.96 Aligned_cols=116 Identities=21% Similarity=0.194 Sum_probs=70.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|.+|+|||||+|+|++..+ +....+++........
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~-------------------------------------- 46 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANV-------------------------------------- 46 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEE--------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEE--------------------------------------
Confidence 5799999999999999999998765 2221111111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccch--H
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LATS--D 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~~--~ 194 (368)
.+ ......+.++||||.... ..+...|+..+|++++|++..+.. +... .
T Consensus 47 --------------~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 98 (186)
T 1mh1_A 47 --------------MV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98 (186)
T ss_dssp --------------EE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred --------------EE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHH
Confidence 01 112236789999998542 233466889999887766543321 1111 1
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+....+ +.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 99 WYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp HHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHhCC-CCCEEEEeEccccccc
Confidence 2233333333 7899999999999864
No 122
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=7.9e-14 Score=120.53 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=68.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|+|.+|+|||||+|+|++..+ +....+++.......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 65 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVAD--------------------------------------- 65 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-C-------CCEEEEE---------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccceEEEE---------------------------------------
Confidence 5799999999999999999999875 211111111110000
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc--hH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT--SD 194 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~--~~ 194 (368)
+.+ ......+.|+||||.... ..+...|+..+|++|+|++..+.. +.. ..
T Consensus 66 -------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 118 (207)
T 2fv8_A 66 -------------IEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEK 118 (207)
T ss_dssp -------------EEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHT
T ss_pred -------------EEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 001 111236889999997542 223456889999887766543321 111 11
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+.... .+.|+++|+||+|+.+.
T Consensus 119 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 119 WVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred HHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 222333332 26899999999999865
No 123
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.43 E-value=6.9e-14 Score=118.66 Aligned_cols=118 Identities=22% Similarity=0.347 Sum_probs=71.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
.+.|+++|++|+|||||+|+|+|..+.+......|..+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~--------------------------------------- 47 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEG--------------------------------------- 47 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEE---------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEE---------------------------------------
Confidence 46899999999999999999999764221111111111100
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcccchH
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDLATSD 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~~~~~ 194 (368)
.+.. +...+.++||||........ . ...+...|+. .+|+++++++..+ . ..
T Consensus 48 ---------------~~~~-~~~~~~l~Dt~G~~~~~~~~----~---~~~~~~~~~~~~~~~~~i~v~d~~~--~--~~ 100 (188)
T 2wjg_A 48 ---------------EFEY-NGEKFKVVDLPGVYSLTANS----I---DEIIARDYIINEKPDLVVNIVDATA--L--ER 100 (188)
T ss_dssp ---------------EEEE-TTEEEEEEECCCCSCCSSSS----H---HHHHHHHHHHHHCCSEEEEEEEGGG--H--HH
T ss_pred ---------------EEEe-CCcEEEEEECCCcCcccccc----H---HHHHHHHHHhccCCCEEEEEecchh--H--HH
Confidence 1111 23478999999987643221 1 1334455654 5897766554432 1 22
Q ss_pred HHHHHHhhCCCCCceEEeeccCcccC
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...+...+...+.|+++|+||+|+..
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 23344445456789999999999864
No 124
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=120.60 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
-.+|+|+|++|+|||||+|+|++..+ +....+++.......
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 74 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVN-------------------------------------- 74 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEE--------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEE--------------------------------------
Confidence 35799999999999999999999775 322212111110000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH--
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD-- 194 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~-- 194 (368)
+.+ ......+.|+||||... +..+...|+..+|++++|++..+. ..-..
T Consensus 75 --------------~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 125 (214)
T 2j1l_A 75 --------------LQV-KGKPVHLHIWDTAGQDD-------------YDRLRPLFYPDASVLLLCFDVTSP-NSFDNIF 125 (214)
T ss_dssp --------------EEE-TTEEEEEEEEEC----------------------------CEEEEEEEEETTCH-HHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCchh-------------hhHHHHHHhccCCEEEEEEECcCH-HHHHHHH
Confidence 001 11123688999999643 134556788999988776654332 11111
Q ss_pred --HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 --AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 --~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+.... .+.|+++|+||+|+...
T Consensus 126 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 126 NRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 222233332 36899999999999865
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.42 E-value=1.4e-14 Score=124.37 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|.+|+|||||+|+|++..+........+... ...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~------------------------------------- 73 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF-KIR------------------------------------- 73 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-EEE-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-EEE-------------------------------------
Confidence 356899999999999999999999875221111111111 000
Q ss_pred hhhCCCCCCCCCceEEEEecC-CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIYSP-NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~-~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
.+... ....+.|+||||..... .+...|++.+|++|+|++..+. ..-..
T Consensus 74 ----------------~~~~~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~-~s~~~ 123 (199)
T 3l0i_B 74 ----------------TIELDGKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVYDVTDQ-ESFNN 123 (199)
T ss_dssp ----------------EEEETTEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC-CCCS-HHHHH
T ss_pred ----------------EEEECCEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEEECCCH-HHHHH
Confidence 01111 12368999999965432 2245678999977766544332 22222
Q ss_pred ---HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 ---AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ---~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+......+.|+++|+||+|+.+.
T Consensus 124 ~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 124 VKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 222233333447899999999999754
No 126
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.42 E-value=8.5e-13 Score=112.49 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-.+|+++|++|+|||||+|+|++..+-.. ..|..+..-
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~---~~t~~~~~~-------------------------------------- 60 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL---QPTWHPTSE-------------------------------------- 60 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC---CCCCSCEEE--------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc---ccCCCCCeE--------------------------------------
Confidence 346899999999999999999998775211 111111100
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
. +.. +...+.++||||..... .+...|++.+|++++|++..+. ..-...
T Consensus 61 --------------~--~~~-~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 109 (190)
T 1m2o_B 61 --------------E--LAI-GNIKFTTFDLGGHIQAR-------------RLWKDYFPEVNGIVFLVDAADP-ERFDEA 109 (190)
T ss_dssp --------------E--EEE-TTEEEEEEECCCSGGGT-------------TSGGGGCTTCCEEEEEEETTCG-GGHHHH
T ss_pred --------------E--EEE-CCEEEEEEECCCCHHHH-------------HHHHHHHhcCCEEEEEEECCCh-HHHHHH
Confidence 0 111 12578999999986522 2346788999988776655432 211222
Q ss_pred HHHHHhh----CCCCCceEEeeccCcccC
Q 017631 196 VKLSREV----DPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~----~~~~~~~i~VltK~D~~~ 220 (368)
......+ ...+.|+++|+||+|+..
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 2222222 235789999999999975
No 127
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.41 E-value=1.5e-12 Score=111.49 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|+.|+|||||+|++.+... +. ....
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~-~~~~--------------------------------------------- 51 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMS-PN-ETLF--------------------------------------------- 51 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCC-GG-GGGG---------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCC-Cc-ceee---------------------------------------------
Confidence 467899999999999999999998532 21 1000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHH---HHhhcCCCeEEEEEeeCCCc-cc
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMV---RSYIEKPNCLILAITPANQD-LA 191 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~iil~v~~~~~~-~~ 191 (368)
..+....+...+.......+.|+||||...... +. ..|++++|++|+|++..+.. -.
T Consensus 52 ------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 112 (196)
T 3llu_A 52 ------LESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD-------------PTFDYEMIFRGTGALIYVIDAQDDYMEA 112 (196)
T ss_dssp ------CCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC-------------TTCCHHHHHHTCSEEEEEEETTSCCHHH
T ss_pred ------eccccceeeeeccCCCeeEEEEEECCCCHHHHh-------------hhhhcccccccCCEEEEEEECCCchHHH
Confidence 011112222223334456899999999754221 12 57888999887766554420 11
Q ss_pred chHHHHHHHhh--CCCCCceEEeeccCcccCC
Q 017631 192 TSDAVKLSREV--DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 192 ~~~~~~l~~~~--~~~~~~~i~VltK~D~~~~ 221 (368)
...+..++..+ ...+.|+++|.||+|+.++
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 12222333333 2347899999999999764
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.41 E-value=5.5e-13 Score=114.47 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-.+|+++|++|+|||||+|+|.+..+ +. ...|..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 59 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP----------------------------------------- 59 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc-----------------------------------------
Confidence 346899999999999999999998764 11 0011101
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
..-.+.+ . ...+.++||||.... ..+...|++.+|++++|++..+.. .-...
T Consensus 60 -----------~~~~~~~--~-~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~-s~~~~ 111 (198)
T 1f6b_A 60 -----------TSEELTI--A-GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHE-RLLES 111 (198)
T ss_dssp -----------SCEEEEE--T-TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGG-GHHHH
T ss_pred -----------eeEEEEE--C-CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHH-HHHHH
Confidence 0011111 1 257899999997442 224567889999887766554321 11222
Q ss_pred HHHHHhh----CCCCCceEEeeccCcccC
Q 017631 196 VKLSREV----DPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~----~~~~~~~i~VltK~D~~~ 220 (368)
...+..+ ...+.|+++|+||+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2222222 235789999999999975
No 129
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.41 E-value=6.4e-13 Score=119.30 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.-.+|+++|.+|+|||||+|+|+|.++.+.+.. .+|..+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 78 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS------------------------------------ 78 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE------------------------------------
Confidence 347899999999999999999999886333322 2222221111
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhc--CCCeEEEEEeeCCCcccc
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIE--KPNCLILAITPANQDLAT 192 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~iil~v~~~~~~~~~ 192 (368)
+. .....++||||||+.+.... .+.....+.+++. .+|++++|+......+..
T Consensus 79 ------------------~~-~~~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~ 133 (262)
T 3def_A 79 ------------------RT-MGGFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDE 133 (262)
T ss_dssp ------------------EE-ETTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCH
T ss_pred ------------------EE-ECCeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCH
Confidence 11 12347899999999774432 1222333444443 678666554322222322
Q ss_pred h--HHHHHHHhhCCC--CCceEEeeccCcccCC
Q 017631 193 S--DAVKLSREVDPT--GERTFGVLTKLDLMDK 221 (368)
Q Consensus 193 ~--~~~~l~~~~~~~--~~~~i~VltK~D~~~~ 221 (368)
. .+.+.+...... ..|+++|+||+|+.++
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 233333333221 2489999999999744
No 130
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.40 E-value=3.8e-13 Score=117.10 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=60.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-cc-chHHHHHHHhhCCCCCceEEeeccC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LA-TSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~-~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
..+.||||||.... ..+...|++.++++++|.+..+.. +. ...+...+........|+++|.||+
T Consensus 62 v~l~iwDtaGqe~~-------------~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLERF-------------RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTTTC-------------GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred EEEEEEECCCchhh-------------hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 46789999997442 456788999999887766544321 11 1233333444445568999999999
Q ss_pred cccCCcc----hHHHhhhCCCccCCCCeEEEEeCCccccccCcc
Q 017631 217 DLMDKGT----NALDILEGRSYPLQHPWVGIVNRSQADINKNVD 256 (368)
Q Consensus 217 D~~~~~~----~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~ 256 (368)
|+.+... +..++.+ ..+..|+.+++.++.++++.+.
T Consensus 129 Dl~~~r~V~~~e~~~~a~----~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 129 DLADKRQVSIEEGERKAK----ELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp TCGGGCCSCHHHHHHHHH----HHTCEEEEEBTTTTBSHHHHHH
T ss_pred chHhcCcccHHHHhhHHH----HhCCeeEEEeCCCCcCHHHHHH
Confidence 9975422 1222222 2234566777666665544433
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.40 E-value=1e-13 Score=120.14 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
...|+|+|++|+|||||+|+|++..+ +....+++.......+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~------------------------------------- 50 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANV------------------------------------- 50 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEE-------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEE-------------------------------------
Confidence 46899999999999999999998775 3222222211111110
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS--- 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~--- 193 (368)
.+ ......+.|+||||..... .+...|+.++|++|+|++..+.. .-.
T Consensus 51 ---------------~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~ 100 (212)
T 2j0v_A 51 ---------------AV-DGQIVNLGLWDTAGQEDYS-------------RLRPLSYRGADIFVLAFSLISKA-SYENVL 100 (212)
T ss_dssp ---------------EC-SSCEEEEEEECCCCCCCCC-------------C--CGGGTTCSEEEEEEETTCHH-HHHHHH
T ss_pred ---------------EE-CCEEEEEEEEECCCcHHHH-------------HHHHhhccCCCEEEEEEECCCHH-HHHHHH
Confidence 00 1122468899999985422 23456899999887766543321 111
Q ss_pred -HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 -DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 -~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+....+ +.|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 101 KKWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 22233333333 6899999999999754
No 132
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.39 E-value=4.7e-14 Score=118.89 Aligned_cols=68 Identities=26% Similarity=0.265 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch----HHHHHHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS----DAVKLSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~----~~~~l~~~~~~~~~~~i~Vlt 214 (368)
..+.|+||||.... ..+...|++++|++++|++..+. ..-. .+...+....+ +.|+++|+|
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~piilv~n 120 (182)
T 3bwd_D 56 VNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAP-GVPIVLVGT 120 (182)
T ss_dssp --CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCT-TCCEEEEEE
T ss_pred EEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence 36789999997542 23456788999988776654332 1111 12233333333 689999999
Q ss_pred cCcccCC
Q 017631 215 KLDLMDK 221 (368)
Q Consensus 215 K~D~~~~ 221 (368)
|+|+.+.
T Consensus 121 K~Dl~~~ 127 (182)
T 3bwd_D 121 KLDLRDD 127 (182)
T ss_dssp CHHHHTC
T ss_pred chhhhcC
Confidence 9999754
No 133
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.39 E-value=2.2e-13 Score=117.57 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.-.+|+|+|.+|+|||||+++|++..+. ....+.+........
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~------------------------------------ 71 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANV------------------------------------ 71 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEE------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEE------------------------------------
Confidence 3468999999999999999999987652 211111111100000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
........+.|+||||.... ..+...|++.+|++++|++..+. ....
T Consensus 72 -----------------~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 120 (204)
T 4gzl_A 72 -----------------MVDGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSP-ASFENV 120 (204)
T ss_dssp -----------------ECC-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHH
T ss_pred -----------------EECCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 00112235679999998542 23456789999988776654332 1111
Q ss_pred --HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 --DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 --~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.+...+.... .+.|+++|+||+|+.+..
T Consensus 121 ~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 121 RAKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HHTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 1222333332 368999999999998653
No 134
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.39 E-value=1.9e-13 Score=118.88 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=71.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDR 116 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (368)
..+|+|+|++|+|||||+|+|++..+ +....++........
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 67 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTAC-------------------------------------- 67 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEE--------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEE--------------------------------------
Confidence 46799999999999999999998875 222111111110000
Q ss_pred hhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-c--ch
Q 017631 117 VTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-A--TS 193 (368)
Q Consensus 117 ~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~--~~ 193 (368)
+.+ ......+.|+||||.... ..+...|++.+|++|+|++..+... . ..
T Consensus 68 --------------~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 119 (214)
T 3q3j_B 68 --------------LET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSALK 119 (214)
T ss_dssp --------------EEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHT
T ss_pred --------------EEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHH
Confidence 000 112236889999997542 2345678999998887765544211 1 12
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+.... .+.|+++|.||+|+.+.
T Consensus 120 ~~~~~i~~~~-~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 120 KWRTEILDYC-PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp HHHHHHHHHC-TTSEEEEEEECGGGGGC
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 2333344443 36899999999999753
No 135
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.38 E-value=9.8e-13 Score=110.43 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=23.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
.+|+|+|++|+|||||+|+|++..+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 5799999999999999999999876
No 136
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.08 E-value=3.6e-14 Score=122.34 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHH-HHHHhhCCC--CCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAV-KLSREVDPT--GERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~VltK 215 (368)
..+.++||||.... ..+...|+.++|++++|++..+.. .-.... .+...+... +.|+++|+||
T Consensus 78 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK 143 (204)
T 3th5_A 78 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTK 143 (204)
Confidence 35779999997431 345667889999887766543321 111111 222333222 6899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (204)
T 3th5_A 144 LDLRDD 149 (204)
Confidence 999854
No 137
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.38 E-value=2.8e-12 Score=109.27 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCccc--ch---HHHHHHHhh--CCCCCceEE
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLA--TS---DAVKLSREV--DPTGERTFG 211 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~--~~---~~~~l~~~~--~~~~~~~i~ 211 (368)
..+.|+||||.... ..+...|++++|++|+|++....... .. ....++..+ ...+.|+++
T Consensus 74 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 74 TRFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred eEEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 36889999997541 34567799999988776655421000 01 111223333 235789999
Q ss_pred eeccCcccCC
Q 017631 212 VLTKLDLMDK 221 (368)
Q Consensus 212 VltK~D~~~~ 221 (368)
|+||+|+.+.
T Consensus 141 v~NK~Dl~~~ 150 (198)
T 3t1o_A 141 QVNKRDLPDA 150 (198)
T ss_dssp EEECTTSTTC
T ss_pred EEEchhcccc
Confidence 9999999754
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=2.1e-12 Score=124.55 Aligned_cols=128 Identities=21% Similarity=0.329 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCc-ccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSG-IVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~-~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
..++|+++|++|||||||+|+|+|.....++.. .+|+.+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~------------------------------------- 221 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDD------------------------------------- 221 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCE-------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEE-------------------------------------
Confidence 457999999999999999999999875222221 122211100
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHH-HHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEI-ETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
. +.. +...+.+|||||+....... .+ ..+.+ ...+..++..+|.++++++ +......+
T Consensus 222 ---------------~--i~~-~g~~~~l~Dt~G~~~~~~~~-~~-~~e~~~~~~~~~~i~~ad~vllv~d-~~~~~~~~ 280 (439)
T 1mky_A 222 ---------------E--VFI-DGRKYVFVDTAGLRRKSRVE-PR-TVEKYSNYRVVDSIEKADVVVIVLD-ATQGITRQ 280 (439)
T ss_dssp ---------------E--EEE-TTEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEEE-TTTCCCHH
T ss_pred ---------------E--EEE-CCEEEEEEECCCCccccccc-hh-hHHHHHHHHHHHHHhhCCEEEEEEe-CCCCCCHH
Confidence 1 111 22368899999985432110 00 00000 1123567788997766554 44333333
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+ ..+...+...+.++++|+||+|+.+..
T Consensus 281 ~-~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 281 D-QRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp H-HHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred H-HHHHHHHHHcCCCEEEEEECccCCCch
Confidence 3 335555555689999999999998643
No 139
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.37 E-value=1.7e-13 Score=119.69 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=43.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc---hHHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT---SDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~---~~~~~l~~~~~~~~~~~i~VltK 215 (368)
..+.|+||||..... .+...|+.++|++|+|++..+. ... ..+...+.... .+.|+++|+||
T Consensus 64 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 128 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFG-------------GLRDGYYIQAQCAIIMFDVTSR-VTYKNVPNWHRDLVRVC-ENIPIVLCGNK 128 (221)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHS-TTCCEEEEEEC
T ss_pred EEEEEEeCCChHHHh-------------HHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 468899999965422 2345688899988766654332 111 12222333332 26899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 129 ~Dl~~~ 134 (221)
T 3gj0_A 129 VDIKDR 134 (221)
T ss_dssp TTSSSC
T ss_pred Cccccc
Confidence 999754
No 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.37 E-value=1.2e-12 Score=110.94 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
-.+|+|+|++|+|||||+|++++..+
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35699999999999999999998875
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=121.86 Aligned_cols=113 Identities=18% Similarity=0.230 Sum_probs=66.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhhh
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRVT 118 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (368)
+|+|+|.+|+|||||+|+|++..+... . .|......
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~~--~-pT~~~~~~----------------------------------------- 202 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVTT--I-PTIGFNVE----------------------------------------- 202 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEEE--E-EETTEEEE-----------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCCc--c-cccceEEE-----------------------------------------
Confidence 799999999999999999998875111 0 11111000
Q ss_pred CCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHH
Q 017631 119 GKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKL 198 (368)
Q Consensus 119 ~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l 198 (368)
.+.. ....+.|+||||.... ..+...|++.+|++|+|++..+..........+
T Consensus 203 -------------~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 203 -------------TVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp -------------EEEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred -------------EEec-CcEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 0111 2347899999995332 334677899999887766554322111111112
Q ss_pred HHhhC---CCCCceEEeeccCcccCCc
Q 017631 199 SREVD---PTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 199 ~~~~~---~~~~~~i~VltK~D~~~~~ 222 (368)
...+. ..+.|+++|+||+|+.+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc
Confidence 22222 2378999999999998653
No 142
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.35 E-value=7.4e-13 Score=112.08 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+ +....+.........
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 47 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTAS------------------------------------- 47 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEE-------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEE-------------------------------------
Confidence 346899999999999999999999775 222111111010000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
+.+ ......+.|+||||.... ..+...|+..+|++++|++..+. ..-.
T Consensus 48 ---------------~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~ 97 (184)
T 1m7b_A 48 ---------------FEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRP-ETLDSV 97 (184)
T ss_dssp ---------------EEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCH-HHHHHH
Confidence 000 112236889999997542 22345688999988766654332 1111
Q ss_pred --HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 --DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 --~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...+.... .+.|+++|+||+|+.+.
T Consensus 98 ~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 98 LKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp HHTHHHHHHHHC-TTCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHHC-CCCCEEEEEEcchhhcc
Confidence 1222233333 36899999999999853
No 143
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.34 E-value=6e-12 Score=124.44 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=58.5
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...+.++||||.... ..+...|++++|++|+|++.+ ..-....+...+....+ +.|+++|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V~D~s-~~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLLLDSR-TDSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEEECGG-GGGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEEEeCC-CchhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 347899999995432 123456788899777666543 33223344444444443 589999999999
Q ss_pred ccCCcchHHHhhhCCCccCCCCeEEEEeCCccccccCccHHHH
Q 017631 218 LMDKGTNALDILEGRSYPLQHPWVGIVNRSQADINKNVDMIAA 260 (368)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s~~~~~~~~~~~~~ 260 (368)
+.+......+..+......+..++.+++.++.+++.+...+..
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 9864331122221112223345666666666665555544443
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.34 E-value=3.1e-12 Score=117.53 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH---HHHHHHhhC--CCCCceEEe
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD---AVKLSREVD--PTGERTFGV 212 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~---~~~l~~~~~--~~~~~~i~V 212 (368)
...+.+|||||.... .......+...|++++|++|+|++..+.. .... +...+..+. ..+.|+++|
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~-s~~~l~~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTE-VLKDIEIFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSC-HHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChh-hHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 457899999997542 11111355778889999887766554432 1121 122222222 236899999
Q ss_pred eccCcccC
Q 017631 213 LTKLDLMD 220 (368)
Q Consensus 213 ltK~D~~~ 220 (368)
+||+|+..
T Consensus 122 ~NK~Dl~~ 129 (307)
T 3r7w_A 122 LHKMDLVQ 129 (307)
T ss_dssp EECGGGSC
T ss_pred Eecccccc
Confidence 99999986
No 145
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.1e-13 Score=131.36 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCccccC-ccccccc
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRGS-GIVTRRP 74 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~~-~~~t~~p 74 (368)
+|++||.+|+|||||+|+|+|... .++. ..+|+.|
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~ 37 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEA 37 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------C
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCC
Confidence 689999999999999999999873 3322 2355544
No 146
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.33 E-value=9.8e-13 Score=113.62 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+|+|++|+|||||+|+|++..+ +....++........
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 68 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTAS------------------------------------- 68 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEE-------------------------------------
Confidence 346899999999999999999999875 222111111010000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch--
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS-- 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~-- 193 (368)
+.+ ......+.|+||||.... ..+...|+..+|++|+|++..+. ..-.
T Consensus 69 ---------------~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~-~s~~~~ 118 (205)
T 1gwn_A 69 ---------------FEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRP-ETLDSV 118 (205)
T ss_dssp ---------------EES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCH-HHHHHH
Confidence 000 112246889999997542 22345688999988776654432 1111
Q ss_pred --HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 --DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 --~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+...++... .+.|+++|+||+|+.+.
T Consensus 119 ~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 119 LKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp HHTHHHHHHHHC-TTCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHHC-CCCCEEEEEechhhccc
Confidence 1222233332 36899999999999753
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.32 E-value=3.5e-13 Score=131.86 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|.|+++|++|+|||||+|+|.+..+........|...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 468999999999999999999998765322222222111
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.. ..+..+....++||||||..... .+...++..+|.+||+++ +.... ...+
T Consensus 42 ---------~~----~~v~~~~g~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~vILVVD-a~dg~-~~qt 93 (537)
T 3izy_P 42 ---------GA----FLVSLPSGEKITFLDTPGHAAFS-------------AMRARGTQVTDIVILVVA-ADDGV-MKQT 93 (537)
T ss_dssp ---------TS----CCBCSSCSSCCBCEECSSSCCTT-------------TSBBSSSBSBSSCEEECB-SSSCC-CHHH
T ss_pred ---------eE----EEEEeCCCCEEEEEECCChHHHH-------------HHHHHHHccCCEEEEEEE-CCCCc-cHHH
Confidence 00 00222334478999999975432 234567889997776654 44433 3344
Q ss_pred HHHHHhhCCCCCceEEeeccCcccCC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
...+..+...+.|+++|+||+|+.+.
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHHcCCcEEEEEeccccccc
Confidence 44566666678899999999999743
No 148
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.32 E-value=1.2e-11 Score=107.51 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=25.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
..|.|+|+|++|+|||||+|+|++..+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999999999875
No 149
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.31 E-value=2.5e-11 Score=118.99 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=70.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETDRV 117 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (368)
.+|+|||.+|+|||||+|+|++..+ +. ...|.......
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~--------------------------------------- 360 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVET--------------------------------------- 360 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEE---------------------------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEE---------------------------------------
Confidence 5799999999999999999999874 11 11122221111
Q ss_pred hCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHH
Q 017631 118 TGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVK 197 (368)
Q Consensus 118 ~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~ 197 (368)
+.. ....+.|+||||.... ..+...|++.+|++|+|++..+. ..-.....
T Consensus 361 ---------------~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~~-~s~~~~~~ 410 (497)
T 3lvq_E 361 ---------------VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADR-DRIDEARQ 410 (497)
T ss_dssp ---------------EES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTCG-GGHHHHHH
T ss_pred ---------------EEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcch-hHHHHHHH
Confidence 111 3357899999996542 23467889999987766654432 22222222
Q ss_pred HHHhh----CCCCCceEEeeccCcccCC
Q 017631 198 LSREV----DPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 198 l~~~~----~~~~~~~i~VltK~D~~~~ 221 (368)
.+..+ ...+.|+++|+||+|+.+.
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 22222 2247899999999999754
No 150
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.30 E-value=3.8e-12 Score=117.79 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
...+|+++|.+|+|||||+|++++..+ +....+++.......+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~------------------------------------ 196 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANV------------------------------------ 196 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEE------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEE------------------------------------
Confidence 457899999999999999999998765 2222222211111010
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH-
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD- 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~- 194 (368)
.+ ......+.|+||||.... ..+...|+..+|++++|++..+. ..-..
T Consensus 197 ----------------~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 245 (332)
T 2wkq_A 197 ----------------MV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSP-ASFHHV 245 (332)
T ss_dssp ----------------EE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHH
T ss_pred ----------------EE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCH-HHHHHH
Confidence 00 111235679999997543 23356788999987766654332 11111
Q ss_pred ---HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 ---AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 ---~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+...+....+ +.|+++|+||+|+.+.
T Consensus 246 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 246 RAKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HHTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 2223333333 7899999999999754
No 151
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=6e-12 Score=109.16 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=41.2
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC-cccc-hHHHHHHHhh-CCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ-DLAT-SDAVKLSREV-DPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~-~~~~-~~~~~l~~~~-~~~~~~~i~VltK~ 216 (368)
.+.++||+|.... ...+...|.+.+|++|+|++-.+. .+.. ..+...+... ...+.|+++|.||+
T Consensus 88 ~l~~~Dt~g~~~~------------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 88 TIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEECCTTTTHH------------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred EEEEeecCCCcch------------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 5789999996320 134556778889988776654332 1111 1122222222 23468999999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+.+
T Consensus 156 DL~~ 159 (211)
T 2g3y_A 156 DLVR 159 (211)
T ss_dssp TCGG
T ss_pred HHhc
Confidence 9974
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=4.4e-12 Score=118.99 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=41.0
Q ss_pred CeEEEeCCCCcccCCC-CCChhHHHHHHHHHHHhhcC-------------CCeEEEEEeeCCCcccchHHHHHHHhhCCC
Q 017631 140 NLTLIDLPGITKVAVE-GQPESVVLEIETMVRSYIEK-------------PNCLILAITPANQDLATSDAVKLSREVDPT 205 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~d~iil~v~~~~~~~~~~~~~~l~~~~~~~ 205 (368)
.+++|||||+.+.... ..-..+...+......|+.. +|+++++|+++...+...+ ..+++.+. .
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d-~~~~~~l~-~ 173 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIH-N 173 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHH-HHHHHHTC-S
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhH-HHHHHHhc-c
Confidence 6899999999654321 11112333333333455542 3456666666455444433 34566665 5
Q ss_pred CCceEEeeccCcccCCc
Q 017631 206 GERTFGVLTKLDLMDKG 222 (368)
Q Consensus 206 ~~~~i~VltK~D~~~~~ 222 (368)
+.|+|+|+||+|+..+.
T Consensus 174 ~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 174 KVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -SCEEEEEECCSSSCHH
T ss_pred CCCEEEEEECCCCCCHH
Confidence 78999999999998653
No 153
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.27 E-value=3.4e-11 Score=114.80 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=44.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch---HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS---DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~---~~~~l~~~~~~~~~~~i~VltK 215 (368)
..++||||||..+ +......++..+|+++++++. ....... ++..++..+. ..++++|+||
T Consensus 75 ~~~~iiDtPGh~~-------------~~~~~~~~~~~~D~~ilVvda-~~~~~~~qt~~~~~~~~~~~--~~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHEV-------------LMATMLSGAALMDGAILVVAA-NEPFPQPQTREHFVALGIIG--VKNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCGG-------------GHHHHHHHHTTCSEEEEEEET-TSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred ceEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEEC-CCCCCcHHHHHHHHHHHHcC--CCCEEEEEEC
Confidence 4789999999633 145567788999987766654 4433222 2333333332 2589999999
Q ss_pred CcccCCc
Q 017631 216 LDLMDKG 222 (368)
Q Consensus 216 ~D~~~~~ 222 (368)
+|+.+..
T Consensus 139 ~Dl~~~~ 145 (403)
T 3sjy_A 139 VDVVSKE 145 (403)
T ss_dssp GGGSCHH
T ss_pred ccccchH
Confidence 9998653
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.26 E-value=2.5e-11 Score=116.82 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
....|+++|.+|+|||||+|+|++..- ....+... .+.+. ....+..-.+++-+.+.... +
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~-----~i~~~~~~--~~~~~----------~~~~g~~~~~~a~~~d~~~~--e 76 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTG-----MVDKRTLE--KYERE----------AKEKNRETWYLSWALDTNQE--E 76 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcC-----CCchHHHH--HHHHH----------HHhccccchhhhhhhccchh--H
Confidence 567899999999999999999987542 00000000 00000 00000000011111111110 1
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc---
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT--- 192 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~--- 192 (368)
+.++++-+.....+... ...++||||||..+ +...+..++..+|+++|+|+... ....
T Consensus 77 ----r~~GiTid~~~~~~~~~-~~~~~iiDTPGh~~-------------f~~~~~~~~~~aD~~ilVVDa~~-g~~e~~~ 137 (439)
T 3j2k_7 77 ----RDKGKTVEVGRAYFETE-KKHFTILDAPGHKS-------------FVPNMIGGASQADLAVLVISARK-GEFETGF 137 (439)
T ss_pred ----hhcCceEEEeEEEEecC-CeEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEECCC-Ccccccc
Confidence 11233333333333333 35899999999743 24455677889998877665533 3210
Q ss_pred ---hHHHHHHHhhCCCCCc-eEEeeccCcccC
Q 017631 193 ---SDAVKLSREVDPTGER-TFGVLTKLDLMD 220 (368)
Q Consensus 193 ---~~~~~l~~~~~~~~~~-~i~VltK~D~~~ 220 (368)
....+.+..+...+.+ +++|+||+|+..
T Consensus 138 ~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 138 EKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 1222233333344566 999999999964
No 155
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.25 E-value=1.2e-11 Score=121.42 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=50.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...++||||||..+. ...+..+++.+|++|+|++. ...... ....++..+...+.|+++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa-~~g~~~-~t~~~~~~~~~~~iPiivviNK~D 145 (528)
T 3tr5_A 81 DYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDA-AKGVEP-RTIKLMEVCRLRHTPIMTFINKMD 145 (528)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEET-TTCSCH-HHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeC-CCCCCH-HHHHHHHHHHHcCCCEEEEEeCCC
Confidence 457999999998652 23467889999988766654 433333 334466666677899999999999
Q ss_pred ccCC
Q 017631 218 LMDK 221 (368)
Q Consensus 218 ~~~~ 221 (368)
+...
T Consensus 146 l~~~ 149 (528)
T 3tr5_A 146 RDTR 149 (528)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9743
No 156
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.25 E-value=1.6e-11 Score=119.59 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
..++||||||..+ +...+..++..+|+++++++ ++.+...+. .+.+..+...+.|.++|+||+|+
T Consensus 73 ~~i~iiDtPGh~~-------------~~~~~~~~~~~aD~~ilVvd-a~~g~~~qt-~e~l~~~~~~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 73 YRITLVDAPGHAD-------------LIRAVVSAADIIDLALIVVD-AKEGPKTQT-GEHMLILDHFNIPIIVVITKSDN 137 (482)
T ss_dssp EEEEECCCSSHHH-------------HHHHHHHHTTSCCEEEEEEE-TTTCSCHHH-HHHHHHHHHTTCCBCEEEECTTS
T ss_pred EEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEe-cCCCccHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 5799999999732 24556788999998776664 444333332 22233333456888999999999
Q ss_pred cCC
Q 017631 219 MDK 221 (368)
Q Consensus 219 ~~~ 221 (368)
.++
T Consensus 138 ~~~ 140 (482)
T 1wb1_A 138 AGT 140 (482)
T ss_dssp SCH
T ss_pred ccc
Confidence 864
No 157
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.24 E-value=1e-11 Score=106.01 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=39.5
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-ccc-hHHHHHHHhh-CCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-LAT-SDAVKLSREV-DPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-~~~-~~~~~l~~~~-~~~~~~~i~VltK~ 216 (368)
.+.++||+|..... ..+...|.+.+|++++|++-.+.. +.. ..+...+... ...+.|+++|.||+
T Consensus 57 ~l~~~Dt~~~~~~~------------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGEN------------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcchh------------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 56789999964310 123355677789777665543321 111 1222223333 33468999999999
Q ss_pred cccC
Q 017631 217 DLMD 220 (368)
Q Consensus 217 D~~~ 220 (368)
|+..
T Consensus 125 Dl~~ 128 (192)
T 2cjw_A 125 DLVR 128 (192)
T ss_dssp TCGG
T ss_pred hhhc
Confidence 9874
No 158
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.24 E-value=2.5e-11 Score=104.04 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
..+|+|+|+.|||||||+++|+|..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999875
No 159
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.22 E-value=1.2e-11 Score=104.56 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+|+|++|+|||||+|+|++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999995
No 160
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.22 E-value=2.7e-12 Score=124.57 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..|.|+++|+.++|||||+++|.+..+........|...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 569999999999999999999987654211111111100
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
+ . ..+. .+...++||||||..+... +..+++..+|.+|||++ +......+.
T Consensus 42 ---~------~----~~v~-~~~~~i~~iDTPGhe~f~~-------------~~~~~~~~aD~aILVVd-a~~g~~~qT- 92 (501)
T 1zo1_I 42 ---G------A----YHVE-TENGMITFLDTPGHAAFTS-------------MRARGAQATDIVVLVVA-ADDGVMPQT- 92 (501)
T ss_dssp ---S------C----CCCC-TTSSCCCEECCCTTTCCTT-------------SBCSSSBSCSSEEEEEE-TTTBSCTTT-
T ss_pred ---E------E----EEEE-ECCEEEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEee-cccCccHHH-
Confidence 0 0 0011 1234789999999865332 23456789998887765 443333332
Q ss_pred HHHHHhhCCCCCceEEeeccCcccC
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLMD 220 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~~ 220 (368)
...+..+...+.|+++|+||+|+..
T Consensus 93 ~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 93 IEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSSST
T ss_pred HHHHHHHHhcCceEEEEEEeccccc
Confidence 2233334445789999999999975
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.21 E-value=1.7e-11 Score=119.51 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=52.0
Q ss_pred CCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc------ccchHH
Q 017631 122 KQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD------LATSDA 195 (368)
Q Consensus 122 ~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~------~~~~~~ 195 (368)
++++.+.....+.. ....++||||||..+ +...+..++..+|+++++++..... ...+.
T Consensus 95 ~GiTi~~~~~~~~~-~~~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt- 159 (483)
T 3p26_A 95 RGVTVSICTSHFST-HRANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT- 159 (483)
T ss_dssp CCSSCCCCEEEEEC-SSCEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHH-
T ss_pred cCcceEeeeEEEec-CCceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhH-
Confidence 34555554554444 346899999999944 2455678899999887776554321 11222
Q ss_pred HHHHHhhCCCC-CceEEeeccCcccCC
Q 017631 196 VKLSREVDPTG-ERTFGVLTKLDLMDK 221 (368)
Q Consensus 196 ~~l~~~~~~~~-~~~i~VltK~D~~~~ 221 (368)
...+..+...+ .++|+|+||+|+.+.
T Consensus 160 ~e~~~~~~~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 160 KEHMLLASSLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp HHHHHHHHHTTCCCEEEEEECGGGGTT
T ss_pred HHHHHHHHHcCCCcEEEEEECcCcccc
Confidence 22222222233 569999999999863
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.20 E-value=4.4e-11 Score=119.42 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 35 EALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 35 ~~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
.....|+++|.+|+|||||+|+|++... ....+.. ..+.......+....++..+.+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i------------~~~~~~~~~~g~~~~~~a~~~d~~~~-- 225 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL------------RKLQRESETMGKSSFKFAWIMDQTNE-- 225 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH------------HHHHHHSSCSSSSCCSSSHHHHHHHH--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH------------HHHHhhhhhccccccceeeeeccchh--
Confidence 3467899999999999999999998742 1110000 00000000001111122233333222
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-----
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD----- 189 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~----- 189 (368)
++..| ++.+.....+.. ....++||||||..+ +...+..++..+|++|+||+.....
T Consensus 226 e~~~G----iTid~~~~~~~~-~~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~ 287 (611)
T 3izq_1 226 ERERG----VTVSICTSHFST-HRANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGF 287 (611)
T ss_dssp HHHTT----TCCSCSCCEEEC-SSCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTC
T ss_pred hhhCC----eeEeeeeEEEec-CCceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccc
Confidence 22223 222222222322 345899999999843 2455678899999887766543210
Q ss_pred -ccchHHHHHHHhhCCCC-CceEEeeccCcccC
Q 017631 190 -LATSDAVKLSREVDPTG-ERTFGVLTKLDLMD 220 (368)
Q Consensus 190 -~~~~~~~~l~~~~~~~~-~~~i~VltK~D~~~ 220 (368)
...+.. ..+..+...+ .++|+|+||+|+.+
T Consensus 288 ~~~~qt~-e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 288 DLDGQTK-EHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CTTSHHH-HHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred hhhhHHH-HHHHHHHHcCCCeEEEEEecccccc
Confidence 112222 2333333334 45999999999986
No 163
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.20 E-value=1.3e-10 Score=108.91 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g 59 (368)
..+.|+++|.+|+|||||+|+|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999974
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.20 E-value=1.7e-11 Score=121.80 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=44.8
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.++||||||..+.... ..+++..+|.+|+|++ +..+...+. ...+..+...+.|+++|+||+|+.
T Consensus 71 ~i~liDTPGhe~F~~~-------------~~r~~~~aD~aILVvD-a~~Gv~~qT-~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTL-------------RKRGGALADLAILIVD-INEGFKPQT-QEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCTTS-------------BCSSSBSCSEEEEEEE-TTTCCCHHH-HHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHHHH-------------HHHHHhhCCEEEEEEE-CCCCccHhH-HHHHHHHHHcCCeEEEEecccccc
Confidence 5899999998654322 3457788997776654 444443332 334444555678999999999997
Q ss_pred C
Q 017631 220 D 220 (368)
Q Consensus 220 ~ 220 (368)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 4
No 165
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.19 E-value=3.6e-11 Score=119.16 Aligned_cols=134 Identities=16% Similarity=0.235 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.++.|+++|+.++|||||+++|++.. +..+.....-. . .+... .+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~~~~---------------------~------~D~~~--~E 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREKREQ---------------------L------LDTLD--VE 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCccccccccc---------------------c------cccch--hh
Confidence 46789999999999999999998632 11110000000 0 00000 00
Q ss_pred hhhCCCCCCCCCceEEEEecCC--CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccch
Q 017631 116 RVTGKSKQISPVPIHLSIYSPN--VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATS 193 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~--~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~ 193 (368)
+. ++..+......+.+...+ ...++||||||..+. ...+.+++..+|.+|+||+ +......+
T Consensus 50 re--rGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVVD-a~~gv~~q 113 (600)
T 2ywe_A 50 RE--RGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLID-ASQGIEAQ 113 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEEE-TTTBCCHH
T ss_pred hc--ccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEEE-CCCCccHH
Confidence 00 112222333444433212 257889999999662 3346677899998876654 44444334
Q ss_pred HHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 194 DAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 194 ~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
... .+..+...+.|+++|+||+|+...
T Consensus 114 t~~-~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 114 TVA-NFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HHH-HHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HHH-HHHHHHHCCCCEEEEEeccCcccc
Confidence 332 233333457899999999999754
No 166
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.18 E-value=2e-10 Score=109.61 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=42.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-cch--HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-ATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
..++||||||..+ +......++..+|.+||+++ ++... ..+ +.+.+++.+. ..++++|+||
T Consensus 81 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVvd-a~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGHET-------------LMATMLSGASLMDGAILVIA-ANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHTTCSCCSEEEEEEE-TTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCHHH-------------HHHHHHHhHhhCCEEEEEEE-CCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 4689999999632 23344566778897776664 44333 222 2222333322 2579999999
Q ss_pred CcccCCc
Q 017631 216 LDLMDKG 222 (368)
Q Consensus 216 ~D~~~~~ 222 (368)
+|+.+..
T Consensus 145 ~Dl~~~~ 151 (408)
T 1s0u_A 145 IDLVDEK 151 (408)
T ss_dssp TTSSCTT
T ss_pred cCCCCHH
Confidence 9998653
No 167
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.18 E-value=8.3e-11 Score=112.37 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=42.8
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc-cch--HHHHHHHhhCCCCCceEEeecc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL-ATS--DAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~-~~~--~~~~l~~~~~~~~~~~i~VltK 215 (368)
..++||||||..+ +.......+..+|.+||+++. +... ..+ +.+.++..+. ..++++|+||
T Consensus 83 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVvda-~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHEA-------------LMTTMLAGASLMDGAILVIAA-NEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHHCGGGCSEEEEEEET-TSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCChHH-------------HHHHHHhhhhhCCEEEEEEEC-CCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 4689999999632 234456667889987766644 4333 222 2333444332 2578999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (410)
T 1kk1_A 147 IELVDK 152 (410)
T ss_dssp GGGSCH
T ss_pred ccCCCH
Confidence 999864
No 168
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.17 E-value=2e-10 Score=107.22 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..+.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999973
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.16 E-value=5.4e-11 Score=118.12 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=46.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
..++||||||..+. ...+.+++..+|.+|+|++. ......+....+ ..+...+.|+++|+||+|+
T Consensus 71 ~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVVDa-~~gv~~qt~~~~-~~~~~~~ipiIvViNKiDl 135 (599)
T 3cb4_D 71 YQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVVDA-GQGVEAQTLANC-YTAMEMDLEVVPVLNKIDL 135 (599)
T ss_dssp EEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEEET-TTCCCTHHHHHH-HHHHHTTCEEEEEEECTTS
T ss_pred EEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEEC-CCCCCHHHHHHH-HHHHHCCCCEEEeeeccCc
Confidence 57899999998652 34567788899987766654 444444443322 2233357899999999999
Q ss_pred cCC
Q 017631 219 MDK 221 (368)
Q Consensus 219 ~~~ 221 (368)
...
T Consensus 136 ~~a 138 (599)
T 3cb4_D 136 PAA 138 (599)
T ss_dssp TTC
T ss_pred ccc
Confidence 754
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.16 E-value=1.4e-10 Score=109.04 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCce-EEeec-cC
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERT-FGVLT-KL 216 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~-i~Vlt-K~ 216 (368)
..++||||||..+. ...+..++..+|.+|++|+ ...+..+. .+.+..+...+.|. ++|+| |+
T Consensus 60 ~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt-~e~~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 60 RNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHT-GECIIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHH-HHHHHHHHHTTCCEEEEEECCGG
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHH-HHHHHHHHHcCCCeEEEEEEecc
Confidence 46999999998541 3334567799998887776 44443332 22333333345666 99999 99
Q ss_pred cc
Q 017631 217 DL 218 (368)
Q Consensus 217 D~ 218 (368)
|+
T Consensus 124 Dl 125 (370)
T 2elf_A 124 ST 125 (370)
T ss_dssp GS
T ss_pred CC
Confidence 99
No 171
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.15 E-value=1.3e-10 Score=114.00 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=50.2
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....++||||||..+. ...+.+++..+|++|++++.. .... .....++..+...+.|+++|+||+
T Consensus 80 ~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~-~g~~-~~t~~~~~~~~~~~ipiivviNK~ 144 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAA-KGVE-DRTRKLMEVTRLRDTPILTFMNKL 144 (529)
T ss_dssp TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETT-TCSC-HHHHHHHHHHTTTTCCEEEEEECT
T ss_pred CCeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCC-ccch-HHHHHHHHHHHHcCCCEEEEEcCc
Confidence 3457999999999552 234577899999887766554 3333 333446666777789999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|+...
T Consensus 145 Dl~~~ 149 (529)
T 2h5e_A 145 DRDIR 149 (529)
T ss_dssp TSCCS
T ss_pred CCccc
Confidence 99754
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.14 E-value=2.2e-10 Score=98.77 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=42.3
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhh---cCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYI---EKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
.+.++||||+...... ....+.+...+..|+ ..++.++++ .+........+ ..+...+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v-~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVP---EEMKRKWQRALGEYLEKRQSLQGLVVL-MDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEE-EETTSCCCHHH-HHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCcccccC---HHHHHHHHHHHHHHHHhhhcccEEEEE-EECCCCCchhH-HHHHHHHHHcCCCeEEEEecc
Confidence 6889999998642211 111223344444554 466766554 44443322221 223333444568899999999
Q ss_pred cccCCc
Q 017631 217 DLMDKG 222 (368)
Q Consensus 217 D~~~~~ 222 (368)
|+.+.+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998654
No 173
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.14 E-value=9.5e-11 Score=99.78 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
...|+|+|+.|||||||+++|+|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999875
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=9.4e-11 Score=111.44 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..+.|++||.+|||||||||+|++..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 34679999999999999999999975
No 175
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.11 E-value=2.6e-10 Score=108.74 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=46.2
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCc-eEEeecc
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER-TFGVLTK 215 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~-~i~VltK 215 (368)
....++||||||..+. ...+..++..+|.+|++++.. .....+ ..+.+..+...+.| +++|+||
T Consensus 73 ~~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~-~g~~~q-t~~~l~~~~~~~ip~iivviNK 137 (405)
T 2c78_A 73 AKRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAA-DGPMPQ-TREHILLARQVGVPYIVVFMNK 137 (405)
T ss_dssp SSCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETT-TCCCHH-HHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECC-CCCcHH-HHHHHHHHHHcCCCEEEEEEEC
Confidence 3468999999998541 345677889999888776543 333222 22333344444667 8899999
Q ss_pred CcccC
Q 017631 216 LDLMD 220 (368)
Q Consensus 216 ~D~~~ 220 (368)
+|+.+
T Consensus 138 ~Dl~~ 142 (405)
T 2c78_A 138 VDMVD 142 (405)
T ss_dssp GGGCC
T ss_pred ccccC
Confidence 99985
No 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.09 E-value=3.9e-10 Score=108.46 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=44.9
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc-------ccchHHHHHHHhhCCCC-Cc
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD-------LATSDAVKLSREVDPTG-ER 208 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~-------~~~~~~~~l~~~~~~~~-~~ 208 (368)
....++||||||..+ +...+..++..+|++|++++... + +..+. .+.+..+...+ .+
T Consensus 82 ~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt-~~~~~~~~~~~~~~ 146 (435)
T 1jny_A 82 KKYFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQT-REHIILAKTMGLDQ 146 (435)
T ss_dssp SSCEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHH-HHHHHHHHHTTCTT
T ss_pred CCeEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHH-HHHHHHHHHcCCCe
Confidence 345799999999854 13456778999998887765544 3 22222 22222222234 46
Q ss_pred eEEeeccCcccC
Q 017631 209 TFGVLTKLDLMD 220 (368)
Q Consensus 209 ~i~VltK~D~~~ 220 (368)
+++|+||+|+.+
T Consensus 147 iivviNK~Dl~~ 158 (435)
T 1jny_A 147 LIVAVNKMDLTE 158 (435)
T ss_dssp CEEEEECGGGSS
T ss_pred EEEEEEcccCCC
Confidence 899999999986
No 177
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.09 E-value=8e-10 Score=106.27 Aligned_cols=148 Identities=11% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
....|+++|+.++|||||+|+|++...........+ ...+.....++ + ...++..+.+.... +
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~-i~~~s~~~gt~-------------~-~~~~~~~~~d~~~~--E 85 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEA-ITRDSKKSGTT-------------G-DDVDLALLVDGLQA--E 85 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC--------------------------------C-CC--CHHHHHHHHC---
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhh-hhhhhhccCcc-------------c-cchhhhhhhccChh--H
Confidence 457899999999999999999997542100000000 00000000000 0 00011111111111 1
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchH-
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSD- 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~- 194 (368)
+.++++-+.-...+. .....++||||||..+. ......++..+|.+|++++. ......+.
T Consensus 86 ----~~rGiTi~~~~~~~~-~~~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa-~~g~~~qt~ 146 (434)
T 1zun_B 86 ----REQGITIDVAYRYFS-TAKRKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDA-RYGVQTQTR 146 (434)
T ss_dssp --------CCCCCEEEEEE-CSSEEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEET-TTCSCHHHH
T ss_pred ----HHCCcEEEeeeeEee-cCCceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEEC-CCCCcHHHH
Confidence 123344333333332 33457999999997431 33456788999977766654 44333332
Q ss_pred -HHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 195 -AVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 195 -~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
+..++..+. -.++++|+||+|+.+.
T Consensus 147 ~~l~~~~~~~--~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 147 RHSYIASLLG--IKHIVVAINKMDLNGF 172 (434)
T ss_dssp HHHHHHHHTT--CCEEEEEEECTTTTTS
T ss_pred HHHHHHHHcC--CCeEEEEEEcCcCCcc
Confidence 222333321 2468999999999863
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.08 E-value=1.2e-10 Score=118.05 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...++||||||..+. ...+..+++.+|.++++++. ......+. ..++..+...+.|+++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvDa-~~g~~~~~-~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLDA-QSGVEPQT-ETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEET-TTBSCHHH-HHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEECC-CCCCcHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 467999999999652 23356788889977766654 33333332 3344455556799999999999
Q ss_pred ccCC
Q 017631 218 LMDK 221 (368)
Q Consensus 218 ~~~~ 221 (368)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.04 E-value=1.1e-09 Score=111.31 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=48.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
..++||||||..+. ...+..++..+|.+|++++.. ..... ....+++.+...+.|.++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~-~gv~~-qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVDF-------------TIEVERSMRVLDGAVMVYCAV-GGVQP-QSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccch-------------HHHHHHHHHHCCEEEEEEeCC-CCCcH-HHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 68999999998652 345677889999887766554 33322 2333555555567899999999999
Q ss_pred cCC
Q 017631 219 MDK 221 (368)
Q Consensus 219 ~~~ 221 (368)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 180
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=2.4e-10 Score=106.32 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=25.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCccccccc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRP 74 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p 74 (368)
.+|++||.+|+|||||+|+|++..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999774222222345444
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=2.6e-09 Score=101.61 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCeEEEeCCCCcccCCCC-CChhHHHHHHHHHHHh-----------hcCC--CeEEEEEeeCCCcccchHHHHHHHhhCC
Q 017631 139 VNLTLIDLPGITKVAVEG-QPESVVLEIETMVRSY-----------IEKP--NCLILAITPANQDLATSDAVKLSREVDP 204 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~--d~iil~v~~~~~~~~~~~~~~l~~~~~~ 204 (368)
+.++++||||+....... .-..+.+.+......| +.++ +++++++.+....+...+ ..+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 378999999997632110 0112222222222333 3344 445555555433443433 346666765
Q ss_pred CCCceEEeeccCcccCC
Q 017631 205 TGERTFGVLTKLDLMDK 221 (368)
Q Consensus 205 ~~~~~i~VltK~D~~~~ 221 (368)
+.++|+|+||+|+..+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.03 E-value=3.8e-10 Score=114.43 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...++||||||..+. ...+.+++..+|.+|++++... ....+. ..++..+...+.|.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~~-g~~~~t-~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSSQ-GVEPQS-ETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETTT-CSCHHH-HHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECCC-Ccchhh-HHHHHHHHHcCCCEEEEEECCC
Confidence 468999999998552 4456788899998877665543 333332 2344445456789999999999
Q ss_pred ccCC
Q 017631 218 LMDK 221 (368)
Q Consensus 218 ~~~~ 221 (368)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9854
No 183
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.03 E-value=6.8e-10 Score=105.53 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=45.4
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCc-eEEeecc
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER-TFGVLTK 215 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~-~i~VltK 215 (368)
....++||||||..+ +...+..++..+|.+|++++. ......+. ...+..+...+.| +++|+||
T Consensus 64 ~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvda-~~g~~~qt-~e~l~~~~~~~vp~iivviNK 128 (397)
T 1d2e_A 64 AARHYAHTDCPGHAD-------------YVKNMITGTAPLDGCILVVAA-NDGPMPQT-REHLLLARQIGVEHVVVYVNK 128 (397)
T ss_dssp SSCEEEEEECSSHHH-------------HHHHHHHTSSCCSEEEEEEET-TTCSCHHH-HHHHHHHHHTTCCCEEEEEEC
T ss_pred CCeEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEEC-CCCCCHHH-HHHHHHHHHcCCCeEEEEEEC
Confidence 345899999999843 234567788999988776654 43333332 2233333334677 6899999
Q ss_pred CcccC
Q 017631 216 LDLMD 220 (368)
Q Consensus 216 ~D~~~ 220 (368)
+|+.+
T Consensus 129 ~Dl~~ 133 (397)
T 1d2e_A 129 ADAVQ 133 (397)
T ss_dssp GGGCS
T ss_pred cccCC
Confidence 99985
No 184
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.02 E-value=6.4e-10 Score=107.60 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC-CccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHH
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD-FLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEET 114 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~-~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (368)
....|+++|++++|||||+|+|++.. .++... . ..+. .-....+....++..+.+....
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-~~~~----------------~~~~~~g~~~~~~a~~~d~~~~-- 65 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-EKFE----------------KEAAELGKGSFKYAWVLDKLKA-- 65 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-HHHH----------------HHGGGGSSSCCCHHHHHHHHHH--
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-HHhh----------------hhHHhcCCcchhhhhhhccchh--
Confidence 34689999999999999999998741 111000 0 0000 0000000111123333333222
Q ss_pred hhhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--
Q 017631 115 DRVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT-- 192 (368)
Q Consensus 115 ~~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~-- 192 (368)
++..|. +-+.....+.. ....++||||||..+ +...+..++..+|++|++|+. ......
T Consensus 66 er~~Gi----Ti~~~~~~~~~-~~~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvda-~~g~~~~s 126 (458)
T 1f60_A 66 ERERGI----TIDIALWKFET-PKYQVTVIDAPGHRD-------------FIKNMITGTSQADCAILIIAG-GVGEFEAG 126 (458)
T ss_dssp HHHTTC----CCSCSCEEEEC-SSEEEEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEEEC-SHHHHHHH
T ss_pred HHhcCc----EEEEEEEEEec-CCceEEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEEeC-CcCccccc
Confidence 222232 22222222333 335799999999643 244567889999988776654 332111
Q ss_pred -----hHHHHHHHhhCCCCCc-eEEeeccCcccC
Q 017631 193 -----SDAVKLSREVDPTGER-TFGVLTKLDLMD 220 (368)
Q Consensus 193 -----~~~~~l~~~~~~~~~~-~i~VltK~D~~~ 220 (368)
+. .+.+..+...+.| +++|+||+|+.+
T Consensus 127 f~~~~qt-~~~~~~~~~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 127 ISKDGQT-REHALLAFTLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp TCTTSHH-HHHHHHHHHTTCCEEEEEEECGGGGT
T ss_pred cCcchhH-HHHHHHHHHcCCCeEEEEEEcccccc
Confidence 22 1122222223454 899999999984
No 185
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.00 E-value=7.8e-10 Score=104.82 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=48.8
Q ss_pred CCeEEEeCCCCcccCCCC-CChh----HHHHHHHHHHHhhc-----------CCCeEEEEEeeCCCcccchHHHHHHHhh
Q 017631 139 VNLTLIDLPGITKVAVEG-QPES----VVLEIETMVRSYIE-----------KPNCLILAITPANQDLATSDAVKLSREV 202 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~-~~~~----~~~~~~~~~~~~~~-----------~~d~iil~v~~~~~~~~~~~~~~l~~~~ 202 (368)
+.++++|+||+....... .... +...+......+.. ..|++++++.++..++...+ ..+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH
Confidence 378999999997532110 0011 22233333344321 12456778888776665555 4578888
Q ss_pred CCCCCceEEeeccCcccCCcc
Q 017631 203 DPTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 203 ~~~~~~~i~VltK~D~~~~~~ 223 (368)
. .+.++|+|+||+|.+.+.+
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHHH
T ss_pred h-hCCCEEEEEcchhccchHH
Confidence 7 6899999999999997643
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.00 E-value=1.3e-11 Score=122.96 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC----cc--cchHHHHHHHhhCCCCCc-eE
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ----DL--ATSDAVKLSREVDPTGER-TF 210 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~----~~--~~~~~~~l~~~~~~~~~~-~i 210 (368)
...++||||||..+.... +..++..+|++||||+.... ++ ..+... .+..+...+.| +|
T Consensus 254 ~~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~lgip~iI 319 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRALGISEIV 319 (592)
T ss_dssp -----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHHSSCCCEE
T ss_pred CeEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHHcCCCeEE
Confidence 357899999998653221 24556789988877765431 11 222222 22223333554 89
Q ss_pred EeeccCcccC
Q 017631 211 GVLTKLDLMD 220 (368)
Q Consensus 211 ~VltK~D~~~ 220 (368)
+|+||+|+.+
T Consensus 320 vviNKiDl~~ 329 (592)
T 3mca_A 320 VSVNKLDLMS 329 (592)
T ss_dssp EEEECGGGGT
T ss_pred EEEecccccc
Confidence 9999999986
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.99 E-value=4.3e-10 Score=110.88 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=53.2
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccC
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKL 216 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~ 216 (368)
....++||||||..+.... +.+.++-+|..|+||+ +..+...+. ..+++.+...+.|.++++||+
T Consensus 98 ~~~~iNlIDTPGHvDF~~E-------------v~raL~~~DgAvlVvd-a~~GV~~qT-~~v~~~a~~~~lp~i~fINK~ 162 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSED-------------TYRVLTAVDSALVVID-AAKGVEAQT-RKLMDVCRMRATPVMTFVNKM 162 (548)
T ss_dssp TTEEEEEECCCCGGGCSHH-------------HHHHHHSCSEEEEEEE-TTTBSCHHH-HHHHHHHHHTTCCEEEEEECT
T ss_pred CCEEEEEEeCCCcHHHHHH-------------HHHHHHhcCceEEEee-cCCCccccc-HHHHHHHHHhCCceEEEEecc
Confidence 4568999999999886533 6777889998876664 444554444 447788888899999999999
Q ss_pred cccCC
Q 017631 217 DLMDK 221 (368)
Q Consensus 217 D~~~~ 221 (368)
|....
T Consensus 163 Dr~~a 167 (548)
T 3vqt_A 163 DREAL 167 (548)
T ss_dssp TSCCC
T ss_pred cchhc
Confidence 99743
No 188
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.98 E-value=4e-10 Score=116.60 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=46.8
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
...++||||||..+. ...+..+++.+|.+|+|++. ......+. ..++..+...+.|.++|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvDa-~~g~~~qt-~~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDT-IEGVCVQT-ETVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEET-TTBSCHHH-HHHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEeC-CCCCCHHH-HHHHHHHHHcCCCeEEEEECCC
Confidence 357899999999763 23467888999987766654 44433333 3344444455789999999999
Q ss_pred cc
Q 017631 218 LM 219 (368)
Q Consensus 218 ~~ 219 (368)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 97
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=5.3e-10 Score=102.17 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCcccc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRG 66 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~ 66 (368)
-.|+|+|+.|+|||||+|+|+|...+|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~ 47 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPER 47 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCC
Confidence 46899999999999999999998554543
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.98 E-value=1.9e-09 Score=100.30 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g 59 (368)
..+.|+++|.+|+|||||+|+|++
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999975
No 191
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=3.4e-10 Score=106.43 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999986
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=97.72 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.6
Q ss_pred CCCeEEEECCC---------CCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQ---------SSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~---------saGKSSllnaL~g~ 60 (368)
...+|+|+|++ |+|||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 45679999999 99999999999994
No 193
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.89 E-value=9.6e-10 Score=106.61 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=37.4
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcc------cchHHHHHHHhhCCCCCc-eE
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDL------ATSDAVKLSREVDPTGER-TF 210 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~------~~~~~~~l~~~~~~~~~~-~i 210 (368)
...++||||||..+. ......++..+|++||+|+.....+ ..+. ...+..+...+.| ++
T Consensus 120 ~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt-~e~l~~~~~~~vp~ii 185 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQGINHLV 185 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHTTCSSEE
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcH-HHHHHHHHHcCCCEEE
Confidence 457999999998542 3335667899998887765543211 0122 2222223334565 89
Q ss_pred EeeccCcccC
Q 017631 211 GVLTKLDLMD 220 (368)
Q Consensus 211 ~VltK~D~~~ 220 (368)
+|+||+|+..
T Consensus 186 vviNK~Dl~~ 195 (467)
T 1r5b_A 186 VVINKMDEPS 195 (467)
T ss_dssp EEEECTTSTT
T ss_pred EEEECccCCC
Confidence 9999999964
No 194
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.86 E-value=2.5e-09 Score=100.49 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
.-.+|++||.+|+|||||+|+|+|..+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 346799999999999999999999875
No 195
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.84 E-value=3.8e-09 Score=110.22 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=45.3
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCc-eEEeecc
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER-TFGVLTK 215 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~-~i~VltK 215 (368)
....++||||||..+ +......++..+|.+|+||+.. .....+.. ..+..+...+.| +|+|+||
T Consensus 357 ~~~kI~IIDTPGHed-------------F~~~mi~gas~AD~aILVVDAt-dGv~~QTr-EhL~ll~~lgIP~IIVVINK 421 (1289)
T 3avx_A 357 PTRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVAAT-DGPMPQTR-EHILLGRQVGVPYIIVFLNK 421 (1289)
T ss_dssp SSCEEEEEECCCHHH-------------HHHHHHHTSCCCSEEEEEEETT-TCSCTTHH-HHHHHHHHHTCSCEEEEEEC
T ss_pred CCEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEcCC-ccCcHHHH-HHHHHHHHcCCCeEEEEEee
Confidence 346899999999843 2445677899999887766543 33333322 122222233567 7899999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|+.+.
T Consensus 422 iDLv~d 427 (1289)
T 3avx_A 422 CDMVDD 427 (1289)
T ss_dssp CTTCCC
T ss_pred cccccc
Confidence 999853
No 196
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.84 E-value=3.2e-08 Score=90.49 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=46.2
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccc--hHHHHHHHh---hCCCCCceEEe
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLAT--SDAVKLSRE---VDPTGERTFGV 212 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~--~~~~~l~~~---~~~~~~~~i~V 212 (368)
...+.||||||.-+.... .-+...|+++++++|+|++..+. +.. ..+..++.. ..+ +.|+++|
T Consensus 45 ~v~LqIWDTAGQErf~~~----------~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEP----------SYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCCC----------SHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred EEEEEEEECCCchhccch----------hhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEE
Confidence 358999999998653210 00357889999988877655443 211 122222322 233 6899999
Q ss_pred eccCcccCCc
Q 017631 213 LTKLDLMDKG 222 (368)
Q Consensus 213 ltK~D~~~~~ 222 (368)
.||+|+.++.
T Consensus 113 gNK~DL~~~~ 122 (331)
T 3r7w_B 113 IHKVDGLSED 122 (331)
T ss_dssp CCCCCSSCSH
T ss_pred EECcccCchh
Confidence 9999998653
No 197
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.84 E-value=9.8e-09 Score=92.15 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=49.4
Q ss_pred CCeEEEeCCCCcccCCCCCC-hhHHHHHHHHHHHh--------------hcCCCeEEEEEeeCCCcccchHHHHHHHhhC
Q 017631 139 VNLTLIDLPGITKVAVEGQP-ESVVLEIETMVRSY--------------IEKPNCLILAITPANQDLATSDAVKLSREVD 203 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~ 203 (368)
+.++++|+||+......... +.+.+.+......+ +..+++.++++++...+....+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 47899999999764332211 11222222211222 1245777777776666665555 45777777
Q ss_pred CCCCceEEeeccCcccCCcc
Q 017631 204 PTGERTFGVLTKLDLMDKGT 223 (368)
Q Consensus 204 ~~~~~~i~VltK~D~~~~~~ 223 (368)
.. .++|+|+||+|.+.+.+
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp TT-SEEEEEETTGGGSCHHH
T ss_pred hc-CcEEEEEeccccCCHHH
Confidence 65 89999999999997643
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.83 E-value=2.1e-09 Score=109.54 Aligned_cols=135 Identities=12% Similarity=0.194 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
.+..|+|+|+..+|||||.++|+-.. +...+.. .+. .+....|+..+.
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~~g-~v~-----------------~~~~~~D~~~~E-------- 59 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHKLG-EVH-----------------DGAATTDWMVQE-------- 59 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHHC------------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCcCc-eec-----------------CCCccCCChHHH--------
Confidence 35679999999999999999998432 1111100 000 001111111111
Q ss_pred hhhCCCCCCC--CCceEEEEecC----CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc
Q 017631 116 RVTGKSKQIS--PVPIHLSIYSP----NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD 189 (368)
Q Consensus 116 ~~~~~~~~~s--~~~i~i~i~~~----~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~ 189 (368)
..+++| ...+.+...+. +...++||||||..+.. .-+.+.++-+|..|++| ++..+
T Consensus 60 ----~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~-------------~Ev~~aLr~~DgavlvV-DaveG 121 (709)
T 4fn5_A 60 ----QERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT-------------IEVERSLRVLDGAVVVF-CGTSG 121 (709)
T ss_dssp ------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH-------------HHHHHHHHHCSEEEEEE-ETTTC
T ss_pred ----HHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH-------------HHHHHHHHHhCeEEEEE-ECCCC
Confidence 123333 34444444332 23579999999998853 23567788899887665 44555
Q ss_pred ccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 190 LATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
...+. ..+++.+...+.|.++++||+|....
T Consensus 122 V~~qT-~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 122 VEPQS-ETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp SCHHH-HHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred CchhH-HHHHHHHHHcCCCeEEEEccccccCc
Confidence 54444 44777777778999999999999743
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.83 E-value=1.4e-09 Score=102.18 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999999864
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.83 E-value=6.8e-09 Score=97.10 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=27.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccE
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPL 75 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~ 75 (368)
..|++||.+|+|||||+|+|++..........+|..|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn 39 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKN 39 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccc
Confidence 57999999999999999999987521122234555553
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=7.1e-09 Score=96.17 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.-..++++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999964
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.81 E-value=1.1e-08 Score=103.46 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
....|+|+|+.|+|||||+++|++........+... .+....++... +
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~------------------------~g~~~~d~~~~--------e 55 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE------------------------EGTTTTDYTPE--------A 55 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG------------------------GTCCSSCCSHH--------H
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec------------------------CCcccccCCHH--------H
Confidence 457899999999999999999997542100001000 01111121111 0
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDA 195 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~ 195 (368)
.. ++++-..-...+.. ....++|+||||..+. ...+..++..+|.++++++ +......+ .
T Consensus 56 ~~----~giti~~~~~~~~~-~~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD-~~~g~~~q-t 115 (665)
T 2dy1_A 56 KL----HRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVS-AEAGVQVG-T 115 (665)
T ss_dssp HH----TTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEE-TTTCSCHH-H
T ss_pred Hh----cCCeEEecceEEee-CCEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEc-CCcccchh-H
Confidence 01 11222222222322 3457899999998542 3456788889998877766 44433333 2
Q ss_pred HHHHHhhCCCCCceEEeeccCccc
Q 017631 196 VKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 196 ~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
..+++.+...+.|.++|+||+|+.
T Consensus 116 ~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHccCCEEEEecCCchh
Confidence 345555555678999999999997
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.79 E-value=1.5e-09 Score=109.05 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=52.7
Q ss_pred CCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeecc
Q 017631 136 PNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTK 215 (368)
Q Consensus 136 ~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK 215 (368)
+....++||||||..+.. .-+.+.++-+|..|++| ++..+...+. ..+++.+...+.|.|+++||
T Consensus 64 ~~~~~iNlIDTPGH~DF~-------------~Ev~raL~~~DgavlVV-Da~~GV~~qT-~~v~~~a~~~~lp~i~~INK 128 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFL-------------AEVYRSLSVLDGAILLI-SAKDGVQAQT-RILFHALRKMGIPTIFFINK 128 (638)
T ss_dssp CSSCBCCCEECCCSSSTH-------------HHHHHHHTTCSEEECCE-ESSCTTCSHH-HHHHHHHHHHTCSCEECCEE
T ss_pred ECCEEEEEEECCCcHHHH-------------HHHHHHHHHhCEEEEEE-eCCCCCcHHH-HHHHHHHHHcCCCeEEEEec
Confidence 345689999999998743 33677889999887665 4455555554 34667777778899999999
Q ss_pred CcccCC
Q 017631 216 LDLMDK 221 (368)
Q Consensus 216 ~D~~~~ 221 (368)
+|....
T Consensus 129 mDr~~a 134 (638)
T 3j25_A 129 IDQNGI 134 (638)
T ss_dssp CCSSSC
T ss_pred cccccC
Confidence 999743
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.78 E-value=7.6e-08 Score=93.45 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=43.5
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCc-eEEeeccC
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER-TFGVLTKL 216 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~-~i~VltK~ 216 (368)
..+++||||||..... ..+...+..... ++ .+|.++++|++ ..... ....++.+... .+ .++|+||+
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i-~pd~vllVvDa-~~g~~---~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AI-QPDNIVYVMDA-SIGQA---CEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HH-CCSEEEEEEET-TCCTT---HHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hh-cCceEEEEEec-ccccc---HHHHHHHHHhh-cCceEEEEeCC
Confidence 3589999999987521 123333333322 23 78877655544 43322 22334433321 45 48999999
Q ss_pred cccCCcchHHH
Q 017631 217 DLMDKGTNALD 227 (368)
Q Consensus 217 D~~~~~~~~~~ 227 (368)
|.........+
T Consensus 251 D~~~~~g~~l~ 261 (504)
T 2j37_W 251 DGHAKGGGALS 261 (504)
T ss_dssp TSCCCCTHHHH
T ss_pred ccccchHHHHH
Confidence 99865443333
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.74 E-value=5.9e-08 Score=86.48 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=25.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh-----CCCCccc
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIV-----GRDFLPR 65 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~-----g~~~~p~ 65 (368)
..+.++++|..|+||||+++.|+ |.+++-+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vv 47 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 47 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 46789999999999999999998 7665433
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.70 E-value=3.3e-07 Score=87.21 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=48.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
++++||||||.... ...+...+..+ . .+..+|.+++|+++ ... ++....++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~-----d~~lm~el~~i-~-~~~~pd~vlLVvDA-~~g---q~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKE-----DKALIEEMKQI-S-NVIHPHEVILVIDG-TIG---QQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSC-----CHHHHHHHHHH-H-HHHCCSEEEEEEEG-GGG---GGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccc-----hHHHHHHHHHH-H-HhhcCceEEEEEeC-CCc---hhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 58999999997642 22233333332 2 23357866665544 322 23344555555555677899999999
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 876554555443
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=3.3e-08 Score=93.06 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccC-cccccccE
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGS-GIVTRRPL 75 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~-~~~t~~p~ 75 (368)
.-..|++||.+|||||||+|+|+|..+.+++. ..||..|.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~ 59 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce
Confidence 34689999999999999999999987523332 34565553
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=9e-08 Score=90.70 Aligned_cols=120 Identities=22% Similarity=0.307 Sum_probs=69.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCccccCcccccccEEEEEEecCCCcccceeeecCCCCcccChHHHHHHHHHHHh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGLQEYAEFLHLPKKKFTDFSIVRKEIQEETD 115 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (368)
..+.++++|+.|||||||+|+|+|..- |. .|..+.....+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~-p~-~GsI~~~g~~~t------------------------------------- 108 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN-EE-EGAAKTGVVEVT------------------------------------- 108 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT-TS-TTSCCCCC-----------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC-cc-CceEEECCeecc-------------------------------------
Confidence 457899999999999999999999642 22 222211110000
Q ss_pred hhhCCCCCCCCCceEEEEecCCCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHH-hhcCCCeEEEEEeeCCCcccchH
Q 017631 116 RVTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRS-YIEKPNCLILAITPANQDLATSD 194 (368)
Q Consensus 116 ~~~~~~~~~s~~~i~i~i~~~~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~iil~v~~~~~~~~~~~ 194 (368)
+ ..+ + ...+..++++++|+||+..... .. ..+... -+...+..+ + .+... . ...
T Consensus 109 ~----------~~~-v-~q~~~~~~ltv~D~~g~~~~~~-----~~----~~~L~~~~L~~~~~~~-~-lS~G~-~-~kq 163 (413)
T 1tq4_A 109 M----------ERH-P-YKHPNIPNVVFWDLPGIGSTNF-----PP----DTYLEKMKFYEYDFFI-I-ISATR-F-KKN 163 (413)
T ss_dssp C----------CCE-E-EECSSCTTEEEEECCCGGGSSC-----CH----HHHHHHTTGGGCSEEE-E-EESSC-C-CHH
T ss_pred e----------eEE-e-ccccccCCeeehHhhcccchHH-----HH----HHHHHHcCCCccCCeE-E-eCCCC-c-cHH
Confidence 0 000 0 1123345899999999864211 12 222222 244445444 3 34332 2 233
Q ss_pred HHHHHHhhCCCCCceEEeeccCccc
Q 017631 195 AVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 195 ~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
...+++.+...+.|+++|+||+|.+
T Consensus 164 rv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 164 DIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEecCccc
Confidence 3447777777789999999999986
No 209
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.62 E-value=4.5e-08 Score=88.38 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=24.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCccccC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRDFLPRGS 67 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~~~p~~~ 67 (368)
-.+|+++|.+|+|||||+|+|+|.....++.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~ 150 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGD 150 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC----
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCC
Confidence 4689999999999999999999987644443
No 210
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.60 E-value=3.5e-08 Score=85.51 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|.|+|+|.+|+|||||+|+|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999875
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.51 E-value=1.1e-06 Score=83.62 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=46.6
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
.+++.||||||..... .......++..+. ..+ .++.+++|+++.. . ++....++.+...-..+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~---~d~~lm~el~~i~-~~~-~pd~vlLVlDa~~-g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYG---EETKLLEEMKEMY-DVL-KPDDVILVIDASI-G---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSC---CTTHHHHHHHHHH-HHH-CCSEEEEEEEGGG-G---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCcccc---CCHHHHHHHHHHH-Hhh-CCcceEEEEeCcc-c---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 4689999999975410 1122344444432 223 5676666655533 2 2233344444433456789999999
Q ss_pred ccCCcchHHHhh
Q 017631 218 LMDKGTNALDIL 229 (368)
Q Consensus 218 ~~~~~~~~~~~~ 229 (368)
.......+.++.
T Consensus 250 ~~a~~G~als~~ 261 (433)
T 3kl4_A 250 GTAKGGGALSAV 261 (433)
T ss_dssp GCSCHHHHHHHH
T ss_pred ccccchHHHHHH
Confidence 986654444443
No 212
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.45 E-value=3.5e-07 Score=90.26 Aligned_cols=27 Identities=30% Similarity=0.488 Sum_probs=24.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
..+.|+|+|.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 568899999999999999999999874
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.41 E-value=9e-07 Score=84.53 Aligned_cols=81 Identities=25% Similarity=0.261 Sum_probs=43.9
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCC-CceEEeecc
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTG-ERTFGVLTK 215 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~-~~~i~VltK 215 (368)
...+++||||||..... ..+...+.. ...+..+|.+++++.+ .... +....++.....- ..+.+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~-----~~l~~~l~~--i~~~~~~d~vllVvda-~~g~---~~~~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE-----KGLLEEMKQ--IKEITNPDEIILVIDG-TIGQ---QAGIQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSH-----HHHHHHHHH--TTSSSCCSEEEEEEEG-GGGG---GHHHHHHHHHTTSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCcccc-----HHHHHHHHH--HHHHhcCcceeEEeec-cccH---HHHHHHHHHhhcccCCeEEEEeC
Confidence 34589999999986521 112221111 1123378876665544 3322 2333445554432 338899999
Q ss_pred CcccCCcchHHHh
Q 017631 216 LDLMDKGTNALDI 228 (368)
Q Consensus 216 ~D~~~~~~~~~~~ 228 (368)
+|..........+
T Consensus 248 ~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 248 LDGSAKGGGALSA 260 (432)
T ss_dssp SSSCSTTHHHHHH
T ss_pred CCCccchHHHHHH
Confidence 9997554434443
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.36 E-value=7.2e-07 Score=77.41 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..+.|+|+|.+|+|||||+++|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999764
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.36 E-value=2.7e-07 Score=82.40 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCc
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRDFL 63 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~~~ 63 (368)
.+++++|.+|+|||||+|+|.|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 68999999999999999999998753
No 216
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.19 E-value=1e-05 Score=74.31 Aligned_cols=79 Identities=27% Similarity=0.334 Sum_probs=47.4
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
++.++||+|....... ..+.+..+.+.. .+|-.++++++.. .++....++.+......+++|+||.|..
T Consensus 213 d~vliDtaG~~~~~~~-----l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETNRN-----LMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTTTC-----HHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHHHH-----HHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 6789999998653222 455555544333 3565665655433 2455555555544345678999999987
Q ss_pred CCcchHHHhh
Q 017631 220 DKGTNALDIL 229 (368)
Q Consensus 220 ~~~~~~~~~~ 229 (368)
.....+..+.
T Consensus 282 a~~G~~l~~~ 291 (328)
T 3e70_C 282 ARGGAALSIS 291 (328)
T ss_dssp SCCHHHHHHH
T ss_pred cchhHHHHHH
Confidence 6655555544
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.18 E-value=1.8e-05 Score=71.83 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=44.6
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLD 217 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D 217 (368)
..+++||||||..... ..+.+...+..+ ..+..+|.+++++.+. .. +.....++.+.+.-..+.+|+||+|
T Consensus 180 ~~D~ViIDTpg~~~~~---~~~~l~~el~~i--~~~~~~d~vllVvda~-~g---~~~~~~~~~~~~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYG---EEAALLEEMKNI--YEAIKPDEVTLVIDAS-IG---QKAYDLASKFNQASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTT---CHHHHHHHHHHH--HHHHCCSEEEEEEEGG-GG---GGHHHHHHHHHHTCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccc---cHHHHHHHHHHH--HHHhcCCEEEEEeeCC-ch---HHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 3589999999986510 111122222222 1233678677666543 21 3334445554432233778999999
Q ss_pred ccCCcchHHHhh
Q 017631 218 LMDKGTNALDIL 229 (368)
Q Consensus 218 ~~~~~~~~~~~~ 229 (368)
.......+.++.
T Consensus 251 ~~~~~g~~~~~~ 262 (297)
T 1j8m_F 251 GTAKGGGALSAV 262 (297)
T ss_dssp GCTTHHHHHHHH
T ss_pred CCcchHHHHHHH
Confidence 876544444443
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.15 E-value=1.2e-05 Score=73.05 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=48.1
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.+.++||+|....... ...++......+++.....++.+++++++... +.....++.+......+++++||.|..
T Consensus 186 d~~llDt~G~~~~~~~-~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~----~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHN-LMEELKKVKRAIAKADPEEPKEVWLVLDAVTG----QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCHH-HHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC----THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCchHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH----HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 5679999998542211 11223333344455566788866665554332 233334444332224578999999987
Q ss_pred CCcchHHHhhh
Q 017631 220 DKGTNALDILE 230 (368)
Q Consensus 220 ~~~~~~~~~~~ 230 (368)
.....+..+..
T Consensus 261 a~gg~~l~i~~ 271 (304)
T 1rj9_A 261 AKGGVLIPIVR 271 (304)
T ss_dssp CCCTTHHHHHH
T ss_pred ccccHHHHHHH
Confidence 66555555543
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.07 E-value=3e-05 Score=73.96 Aligned_cols=79 Identities=25% Similarity=0.283 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.+++||||||..... ......+..+ ..+..++.+++|+.+. .. ++....++...+.-.-.-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~-----~~l~~~L~~~--~~~~~p~~vllVvda~-~g---~~~~~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD-----EAMMDEIKQV--HASINPVETLFVVDAM-TG---QDAANTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTC-----HHHHHHHHHH--HHHSCCSEEEEEEETT-BC---TTHHHHHHHHHHHSCCCCEEEECTTS
T ss_pred CCEEEEECCCccccc-----HHHHHHHHHH--HHhhcCcceeEEeecc-hh---HHHHHHHHHHhccCCCeEEEEecCCC
Confidence 589999999975421 1122222211 3355788777666543 22 23333444443211224579999998
Q ss_pred cCCcchHHHh
Q 017631 219 MDKGTNALDI 228 (368)
Q Consensus 219 ~~~~~~~~~~ 228 (368)
......+..+
T Consensus 253 ~~~~g~~l~i 262 (433)
T 2xxa_A 253 DARGGAALSI 262 (433)
T ss_dssp SSCCTHHHHH
T ss_pred CccHHHHHHH
Confidence 7655444433
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.00 E-value=2.7e-05 Score=74.85 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHH---HHHhh-cCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeec
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETM---VRSYI-EKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLT 214 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~Vlt 214 (368)
.++.||||+|..... ..+...+..+ ++... ..++-++|++++.. .+.....++.+...-..+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt----Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST----GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG----THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc----cHHHHHHHHHHHhhcCCCEEEEE
Confidence 368999999986422 1133333322 22222 24665666665432 23334444444432345678999
Q ss_pred cCcccCCcchHHHhhh
Q 017631 215 KLDLMDKGTNALDILE 230 (368)
Q Consensus 215 K~D~~~~~~~~~~~~~ 230 (368)
|+|.......+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998766666666654
No 221
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.97 E-value=3.4e-06 Score=80.49 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.+-.|+|+|.+++|||||+|+|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4566999999999999999999974
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.94 E-value=8.9e-06 Score=74.04 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=44.7
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHh---h-cCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSY---I-EKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~Vl 213 (368)
.+++.|+||||.... ...+.+.+..+.... + ..++.+++++.. .. .+.....++.+...-.-+-+|+
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda-~t---~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHETLLVIDA-TT---GQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEG-GG---HHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcEEEEEEEC-CC---CHHHHHHHHHHHhcCCCCEEEE
Confidence 357999999996321 222334443332221 2 247766665544 31 2233333333322223456789
Q ss_pred ccCcccCCcchHHHhhh
Q 017631 214 TKLDLMDKGTNALDILE 230 (368)
Q Consensus 214 tK~D~~~~~~~~~~~~~ 230 (368)
||.|.......+.++..
T Consensus 257 Tk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 257 TKLDGTAKGGITLAIAR 273 (306)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCccchHHHHHHHH
Confidence 99999877665655544
No 223
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.82 E-value=0.001 Score=60.81 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=44.7
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHH---HHHhh-cCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETM---VRSYI-EKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVL 213 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~Vl 213 (368)
.++++||||||...... .....+..+ +...+ ..+|.+++++... .. +....-++...+.-...=+|+
T Consensus 191 ~yD~VIIDTpg~l~~~~-----~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~-~~---~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKT-----NLMAELEKMNKIIQQVEKSAPHEVLLVIDAT-TG---QNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGHH-----HHHHHHHHHHHHHHTTCTTCCSEEEEEEEGG-GT---HHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCcccccH-----HHHHHHHHHHHHHhcccCCCCceEEEEEECC-Cc---HHHHHHHHHHhhcCCCcEEEE
Confidence 35899999999865221 122222221 11112 2477666665443 21 333334445544333445789
Q ss_pred ccCcccCCcchHHHhhh
Q 017631 214 TKLDLMDKGTNALDILE 230 (368)
Q Consensus 214 tK~D~~~~~~~~~~~~~ 230 (368)
||+|.......+.++..
T Consensus 262 tk~d~~~~~g~~~~~~~ 278 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIKE 278 (320)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCCCchhHHHHHHH
Confidence 99998766555555443
No 224
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=0.00026 Score=67.13 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=43.4
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
.+++||||||..... ..+...+..+ .. +-.+|.+++++++.. .++....++...+.-..+-+|+||+|.
T Consensus 181 ~DvVIIDTaG~l~~d-----~~l~~el~~i-~~-~~~pd~vlLVvDa~t----gq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQID-----EPLMGELARL-KE-VLGPDEVLLVLDAMT----GQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCSEEEEEEEGGG----TTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHh-hh-ccCCceEEEEEeccc----hHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 489999999975431 1122222222 11 226776776665432 244444555444322346679999998
Q ss_pred cCCcchHHHh
Q 017631 219 MDKGTNALDI 228 (368)
Q Consensus 219 ~~~~~~~~~~ 228 (368)
......+..+
T Consensus 250 ~~~~g~alsi 259 (425)
T 2ffh_A 250 DARGGAALSA 259 (425)
T ss_dssp CSSCHHHHHH
T ss_pred cccHHHHHHH
Confidence 7655444443
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.70 E-value=0.00041 Score=62.77 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.|+++|.+|+||||++..|.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 226
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.61 E-value=0.00021 Score=64.91 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=45.9
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
...++||.|....... ...++..+...+++..+.+++-++|++++ ....... ..++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDp-tsglD~~---~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDG-NTGLNML---PQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEEG-GGGGGGH---HHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEeC-CCCcCHH---HHHHHHHHhcCCCEEEEeCCCCC
Confidence 4678999998642211 11122233334444455678866666664 3222221 12233322224578999999987
Q ss_pred CCcchHHHhhh
Q 017631 220 DKGTNALDILE 230 (368)
Q Consensus 220 ~~~~~~~~~~~ 230 (368)
........+..
T Consensus 260 ~~~g~~l~~~~ 270 (302)
T 3b9q_A 260 ARGGCVVSVVE 270 (302)
T ss_dssp SCTHHHHHHHH
T ss_pred CccChheehHH
Confidence 66555555543
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.59 E-value=0.00029 Score=65.34 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=47.4
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
+..++||.|+...... ...++..+...+++..+.+++-++|++++ ....... ..++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLDp-ttglD~~---~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLDG-NTGLNML---PQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEEG-GGGGGGH---HHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEcC-CCCCCHH---HHHHHHHHhcCCeEEEEecCccc
Confidence 4578999998643211 11123333344455566778866667764 3222121 12233322224678999999988
Q ss_pred CCcchHHHhhh
Q 017631 220 DKGTNALDILE 230 (368)
Q Consensus 220 ~~~~~~~~~~~ 230 (368)
........+..
T Consensus 317 ~~gG~~lsi~~ 327 (359)
T 2og2_A 317 ARGGCVVSVVE 327 (359)
T ss_dssp SCTHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 76665555543
No 228
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.35 E-value=0.0014 Score=59.17 Aligned_cols=81 Identities=26% Similarity=0.333 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDL 218 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~ 218 (368)
++++||||||..... ......+..+... + .++.+++++.. .. ..+....++...+.-...-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d-----~~~~~~l~~~~~~-~-~~~~~~lv~~~-~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQID-----EPLMGELARLKEV-L-GPDEVLLVLDA-MT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHHHH-H-CCSEEEEEEEG-GG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCcccc-----HHHHHHHHHHhhh-c-CCCEEEEEEeC-CC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 589999999976431 1122333332222 2 57766655543 32 233333444433222234578999998
Q ss_pred cCCcchHHHhhh
Q 017631 219 MDKGTNALDILE 230 (368)
Q Consensus 219 ~~~~~~~~~~~~ 230 (368)
......+.++..
T Consensus 250 ~~~~g~~~~~~~ 261 (295)
T 1ls1_A 250 DARGGAALSARH 261 (295)
T ss_dssp CSSCHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 866555555443
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.32 E-value=7.9e-05 Score=67.65 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 469999999999999999999975
No 230
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.96 E-value=0.003 Score=53.22 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCC-----CCceEEee
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPT-----GERTFGVL 213 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~Vl 213 (368)
.+++|||+||... ..+...+..+|.+++++.+.. .. .....+.+.+... +.++.+|+
T Consensus 76 yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSP--LD-FSAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp SSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCT--TT-HHHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCH--HH-HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5899999998753 123445566897776665433 22 3344444444322 34668999
Q ss_pred ccCcccC
Q 017631 214 TKLDLMD 220 (368)
Q Consensus 214 tK~D~~~ 220 (368)
||+|...
T Consensus 138 N~~~~~~ 144 (206)
T 4dzz_A 138 TRKIEMA 144 (206)
T ss_dssp CSBCTTE
T ss_pred eccCCCc
Confidence 9999653
No 231
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.00044 Score=62.74 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=42.2
Q ss_pred CeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCccc
Q 017631 140 NLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLM 219 (368)
Q Consensus 140 ~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~ 219 (368)
.+.++|| .-. . ..+.+.|++++|++|+|++..+.........+++..+...+.|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer---~----------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHR---K----------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCC---S----------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccc---c----------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899998 111 1 334567999999887766544332222222233333333578999999999998
Q ss_pred CC
Q 017631 220 DK 221 (368)
Q Consensus 220 ~~ 221 (368)
++
T Consensus 129 ~~ 130 (301)
T 1u0l_A 129 DE 130 (301)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 232
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.71 E-value=0.0011 Score=63.09 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=19.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~ 58 (368)
.+-.|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45568899999999999999765
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.001 Score=55.36 Aligned_cols=23 Identities=9% Similarity=0.492 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..++++|+.|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 234
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.51 E-value=0.0011 Score=55.16 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 235
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.50 E-value=0.0011 Score=56.09 Aligned_cols=23 Identities=13% Similarity=0.511 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+|+|+.|||||||+++|++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999975
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.50 E-value=0.001 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..++|+|+.|||||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999984
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.49 E-value=0.0017 Score=60.04 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 69999999999999999999975
No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.44 E-value=0.003 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|||||||+|+|+|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 358999999999999999999975
No 239
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.39 E-value=0.014 Score=52.67 Aligned_cols=65 Identities=8% Similarity=0.026 Sum_probs=37.1
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCC----CCCceE-Ee
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDP----TGERTF-GV 212 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~----~~~~~i-~V 212 (368)
..+++|||||+..... .+...+..+|.+|+++.+.. .......++++.+.. .+.+.+ +|
T Consensus 156 ~yD~ViiD~p~~~~~~--------------~~~~~l~~aD~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~~~~~gvV 219 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG--------------GFAAPLQHADQAVVVTANDF--DSIYAMNRIIAAVQAKSKNYKVRLAGCV 219 (307)
T ss_dssp SCSEEEEEECCSSCCG--------------GGGGGGGTCSEEEEEECSSH--HHHHHHHHHHHHHHTTTTTCCCEEEEEE
T ss_pred cCCEEEEeCCCccchH--------------HHHHHHHHCCEEEEEecCcH--HHHHHHHHHHHHHHHhhhcCCCceEEEE
Confidence 4689999998865421 12345678997776654422 222333334444332 234444 88
Q ss_pred eccCcc
Q 017631 213 LTKLDL 218 (368)
Q Consensus 213 ltK~D~ 218 (368)
+||++.
T Consensus 220 ~N~~~~ 225 (307)
T 3end_A 220 ANRSRA 225 (307)
T ss_dssp EESCSC
T ss_pred EecCCc
Confidence 999984
No 240
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.38 E-value=0.0013 Score=55.98 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|+.|||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 241
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.28 E-value=0.002 Score=56.11 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999974
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.26 E-value=0.0017 Score=54.87 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|+.|||||||++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999986
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.25 E-value=0.002 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+++|.+|||||||++.|+|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999996
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.23 E-value=0.0018 Score=54.12 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999985
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.0018 Score=54.21 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC--CccccCccccccc
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD--FLPRGSGIVTRRP 74 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~--~~p~~~~~~t~~p 74 (368)
|+|+|+.|||||||+++|+... -+......+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998542 1223334455544
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.22 E-value=0.0018 Score=55.76 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++|+|+.|||||||+++|+|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 359999999999999999999963
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.22 E-value=0.0018 Score=55.69 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|+|+.|||||||++.|+|..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999953
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.19 E-value=0.0021 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 249
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.18 E-value=0.0023 Score=52.92 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|.++|+|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999874
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.18 E-value=0.0017 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.|+|+|+.|||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999985
No 251
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.16 E-value=0.0026 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 252
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.13 E-value=0.0027 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|||||||++.|+|.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999974
No 253
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.11 E-value=0.0029 Score=55.13 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999999974
No 254
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.10 E-value=0.0028 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999964
No 255
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.09 E-value=0.0029 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999964
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.07 E-value=0.0032 Score=55.12 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 257
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.07 E-value=0.0031 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.++++|+.|||||||++++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 589999999999999998664
No 258
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.07 E-value=0.011 Score=54.31 Aligned_cols=71 Identities=18% Similarity=0.333 Sum_probs=47.5
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC---------CcccchHHHHHHHhhC----
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN---------QDLATSDAVKLSREVD---- 203 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~---------~~~~~~~~~~l~~~~~---- 203 (368)
+...+.+|||+|.-. .+.++..|.++++++|+|++.+. ..-.-.++..+...+.
T Consensus 159 ~~v~l~iwDtaGQe~-------------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQRS-------------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSCHH-------------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCccc-------------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 456899999999733 37788999999998887775541 1111122333333332
Q ss_pred CCCCceEEeeccCcccC
Q 017631 204 PTGERTFGVLTKLDLMD 220 (368)
Q Consensus 204 ~~~~~~i~VltK~D~~~ 220 (368)
..+.|+++++||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24689999999999974
No 259
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.06 E-value=0.003 Score=55.93 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 260
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.06 E-value=0.003 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 261
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.05 E-value=0.0031 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.03 E-value=0.0034 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|+.|||||||++.|++.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45999999999999999999986
No 263
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.02 E-value=0.0032 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.01 E-value=0.0027 Score=51.60 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999964
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.01 E-value=0.0026 Score=56.30 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++|+|+.|||||||+++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999999995
No 266
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.99 E-value=0.0034 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 267
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.98 E-value=0.0035 Score=55.32 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 268
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.98 E-value=0.0034 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 269
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.97 E-value=0.0035 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999974
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.96 E-value=0.0031 Score=57.89 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|+|+.|||||||+++|+|.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999963
No 271
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.96 E-value=0.0034 Score=58.38 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.++|+|+.|||||||+++|+|.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999996
No 272
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.94 E-value=0.0039 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 49999999999999999999974
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.93 E-value=0.0037 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999997
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.90 E-value=0.004 Score=55.31 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|+.|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999997
No 275
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.88 E-value=0.004 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 276
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.87 E-value=0.0043 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|+|+.|||||||++.|+|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 277
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.85 E-value=0.0044 Score=55.36 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.85 E-value=0.0035 Score=61.01 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++|+|++||||||++++|+|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3999999999999999999995
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.85 E-value=0.0034 Score=56.77 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 4999999999999999999984
No 280
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.84 E-value=0.0042 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 281
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.83 E-value=0.002 Score=58.37 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 167 TMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 167 ~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
.+.+.|+.++|.+++|++..+.+.......+++..+...+.|.++|+||+|+.++
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 3455789999977766544333333333333444444467899999999999865
No 282
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.81 E-value=0.0029 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.++++|+.|||||||++.|+|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999997
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.79 E-value=0.0038 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|.+|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.79 E-value=0.0032 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+++|+.|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.0018 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
+.|+|+|..|||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999985
No 286
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.77 E-value=0.0063 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|||||||+|+|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 358999999999999999999 53
No 287
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.76 E-value=0.015 Score=63.09 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCC-CCCceEEeecc
Q 017631 162 VLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDP-TGERTFGVLTK 215 (368)
Q Consensus 162 ~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~-~~~~~i~VltK 215 (368)
.++.-.+++..++++. | |+.+.+...+.......+.+.++. ...+|++++++
T Consensus 1222 QrQriaiARAllr~~~-I-LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPK-I-LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HHHHHHHHHHHHSCCS-E-EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred HHHHHHHHHHHHhCCC-E-EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4566788999999999 3 345655543333333334444443 35678888876
No 288
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.76 E-value=0.0078 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..++++|++|+|||||+.++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 289
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.74 E-value=0.0041 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..|+++|.+||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999863
No 290
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.73 E-value=0.0085 Score=55.41 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc---------ccchHHHHHHHhhCC----
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD---------LATSDAVKLSREVDP---- 204 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~---------~~~~~~~~l~~~~~~---- 204 (368)
...+.++||+|.... +.+...|.++++++|+|++.++.+ -.-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe~~-------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 457899999997542 445678999999888777655422 112333344444332
Q ss_pred CCCceEEeeccCccc
Q 017631 205 TGERTFGVLTKLDLM 219 (368)
Q Consensus 205 ~~~~~i~VltK~D~~ 219 (368)
.+.|+++|+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 368999999999986
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.71 E-value=0.0042 Score=51.76 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.++++|.+|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 292
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.68 E-value=0.0036 Score=56.70 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|||+.|||||||++.|+|.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 49999999999999999999964
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.67 E-value=0.0059 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.66 E-value=0.0067 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.2
Q ss_pred CeEEEECCCCCCHHHHHHHhh---CCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIV---GRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~---g~~ 61 (368)
..|+|+|.+|||||||++.|+ |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 579999999999999999999 875
No 295
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.65 E-value=0.0047 Score=51.83 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|+.|+|||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999985
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.64 E-value=0.0043 Score=57.50 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|++|||||||+++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999985
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.64 E-value=0.0046 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|.+|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999763
No 298
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.62 E-value=0.014 Score=53.27 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeC---------CCcccchHHHHHHHhhCC---
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPA---------NQDLATSDAVKLSREVDP--- 204 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~---------~~~~~~~~~~~l~~~~~~--- 204 (368)
....+.++||+|.-. .+.++..|.++++++|+|+.-+ ...-.-.++..+...+..
T Consensus 165 ~~v~l~iwDtgGQe~-------------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRS-------------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp TTEEEEEEEECCSHH-------------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred eceeeEEEEcCCchh-------------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 346789999999843 2566788999999888777322 111111233344444422
Q ss_pred -CCCceEEeeccCcccC
Q 017631 205 -TGERTFGVLTKLDLMD 220 (368)
Q Consensus 205 -~~~~~i~VltK~D~~~ 220 (368)
.+.|+++++||+|+..
T Consensus 232 ~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLE 248 (327)
T ss_dssp GTTCEEEEEEECHHHHH
T ss_pred cCCceEEEEEECchhhh
Confidence 3589999999999974
No 299
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.60 E-value=0.012 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
-..|+|+|.+|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 300
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.58 E-value=0.0084 Score=55.63 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCc---------ccchHHHHHHHhhCC----
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQD---------LATSDAVKLSREVDP---- 204 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~---------~~~~~~~~l~~~~~~---- 204 (368)
...+.++||||.... ..+...|+++++++|+|+..++.+ -.-.+...+...+..
T Consensus 200 ~~~l~i~Dt~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSE-------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhhh-------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 467899999998431 455678899999888776654411 111233333333322
Q ss_pred CCCceEEeeccCcccC
Q 017631 205 TGERTFGVLTKLDLMD 220 (368)
Q Consensus 205 ~~~~~i~VltK~D~~~ 220 (368)
.+.|+|+|+||+|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 3689999999999963
No 301
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.55 E-value=0.0071 Score=49.18 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=18.9
Q ss_pred CeEEEECCCCCCHHHHHHHh
Q 017631 38 PSVAVVGGQSSGKSSVLESI 57 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL 57 (368)
+.|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.52 E-value=0.0041 Score=53.73 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=15.7
Q ss_pred CeEEEECCCCCCHHHHHHHhh-CC
Q 017631 38 PSVAVVGGQSSGKSSVLESIV-GR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~-g~ 60 (368)
..|+++|+.|||||||++.|. |.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999999 86
No 303
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.52 E-value=0.016 Score=51.81 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=48.0
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCcc--hHHHhhhCCCccCCCCeEEE
Q 017631 166 ETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKGT--NALDILEGRSYPLQHPWVGI 243 (368)
Q Consensus 166 ~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~~--~~~~~~~~~~~~~~~g~~~v 243 (368)
...+.+.+.++|+++.+++ +..+..... ..+.+.+ .++|.++|+||+|++++.. .+.++.+. .+...+.+
T Consensus 14 ~~~~~~~l~~aDvVl~VvD-Ar~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~~----~g~~~i~i 85 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVD-ARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFEN----QGIRSLSI 85 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEE-TTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHHT----TTCCEEEC
T ss_pred HHHHHHHHhhCCEEEEEEe-CCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHHh----cCCcEEEE
Confidence 4556888999997766554 444333321 1122333 4689999999999997422 12333321 12233344
Q ss_pred EeCCccccccCccHHHHHH
Q 017631 244 VNRSQADINKNVDMIAARR 262 (368)
Q Consensus 244 ~~~s~~~~~~~~~~~~~~~ 262 (368)
....+.++..+...+....
T Consensus 86 SA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 86 NSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp CTTTCTTGGGHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 4444445555544444443
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.48 E-value=0.007 Score=51.15 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.-..|+|+|.+|||||||.++|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999763
No 305
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.46 E-value=0.0062 Score=54.72 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999974
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.45 E-value=0.0057 Score=55.60 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.|+|+|+.|||||||++.|.|.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 35899999999999999999985
No 307
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.39 E-value=0.0077 Score=55.77 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48999999999999999999975
No 308
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.39 E-value=0.011 Score=64.11 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|||+.|||||||++.|+|.-
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 39999999999999999999963
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.39 E-value=0.0064 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 310
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.38 E-value=0.0099 Score=48.78 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|.|+|+|..|||||||+++|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3688999999999999999999863
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.34 E-value=0.0093 Score=48.51 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 312
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.34 E-value=0.0081 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 313
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.31 E-value=0.0064 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|++|||||||+++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 314
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.30 E-value=0.0075 Score=55.76 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999999975
No 315
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.29 E-value=0.0096 Score=50.96 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=23.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCcccc
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDFLPRG 66 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~~p~~ 66 (368)
.++++|+.|||||||++.|+|.-..|.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~ 54 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPE 54 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccc
Confidence 5999999999999999999985433443
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.27 E-value=0.0081 Score=51.46 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 317
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.27 E-value=0.0089 Score=55.69 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48999999999999999999975
No 318
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.26 E-value=0.0074 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|..|||||||.++|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 319
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.26 E-value=0.0089 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48999999999999999999974
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.25 E-value=0.0069 Score=56.51 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|++|||||||+++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 321
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.24 E-value=0.0092 Score=55.30 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999999974
No 322
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.19 E-value=0.0051 Score=56.06 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.+|.++|+|..|||||||+|.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999864
No 323
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.18 E-value=0.0097 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999999974
No 324
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.16 E-value=0.008 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhh---CCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIV---GRDF 62 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~---g~~~ 62 (368)
-..|+|+|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3579999999999999999999 8653
No 325
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.16 E-value=0.0071 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
-..++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999985
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.16 E-value=0.0081 Score=52.42 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|+.|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999873
No 327
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.14 E-value=0.01 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 48999999999999999999974
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.13 E-value=0.0077 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
...+|+|+.|||||||++||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.11 E-value=0.011 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+++|..||||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999873
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.01 E-value=0.01 Score=50.00 Aligned_cols=22 Identities=50% Similarity=0.548 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.99 E-value=0.0081 Score=55.83 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++|+|+.|||||||++.|+|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999963
No 332
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.98 E-value=0.013 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999976
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.94 E-value=0.012 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+|+|.+||||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999985
No 334
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.93 E-value=0.0084 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48999999999999999999974
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.92 E-value=0.01 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|..||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.92 E-value=0.015 Score=48.74 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999976
No 337
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.86 E-value=0.014 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.++++|+.|||||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999999984
No 338
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.83 E-value=0.014 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999964
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.81 E-value=0.01 Score=53.84 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999984
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.80 E-value=0.012 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999986
No 341
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.77 E-value=0.016 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+++|.+||||||+.++|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 342
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.71 E-value=0.016 Score=46.47 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.3
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~ 58 (368)
+..+|+|+.|+||||+++||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 343
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.012 Score=56.55 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~~ 61 (368)
=+.++|+|+.|||||||++.|+|..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4789999999999999999999974
No 344
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.69 E-value=0.018 Score=48.32 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+..+|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 345
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.69 E-value=0.018 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~ 58 (368)
.+.|+++|.+||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999995
No 346
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.68 E-value=0.012 Score=49.66 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+|+|..|||||||++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999873
No 347
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.66 E-value=0.0083 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.59 E-value=0.018 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 349
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.23 Score=47.05 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPS-VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~-i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+ |.+.|+||+|||+|..|+++.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3454 999999999999999999764
No 350
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.52 E-value=0.017 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999865
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.48 E-value=0.022 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
-+.|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999998654
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.46 E-value=0.016 Score=51.63 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
++++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 353
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.45 E-value=0.019 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~ 58 (368)
.+..+|+|+.|||||||+++|+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999987
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.42 E-value=0.021 Score=47.12 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.2
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~ 58 (368)
|.|+++|.+||||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999885
No 355
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.39 E-value=0.021 Score=47.06 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~ 58 (368)
.|+++|.+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.39 E-value=0.023 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.|+++|.+||||||+..+|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 357
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.37 E-value=0.023 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~ 58 (368)
.+.|+++|.+||||||+.++|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 358
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.35 E-value=0.017 Score=52.56 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+|+|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999774
No 359
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.33 E-value=0.042 Score=50.51 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..+.|+++|.+|+||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999988763
No 360
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.31 E-value=0.056 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
-+.+++.|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998763
No 361
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.31 E-value=0.018 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
++++|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.31 E-value=0.02 Score=47.53 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999863
No 363
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.30 E-value=0.052 Score=50.91 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=45.9
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCC---------cccchHHHHHHHhhC----C
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQ---------DLATSDAVKLSREVD----P 204 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~---------~~~~~~~~~l~~~~~----~ 204 (368)
...+.|+||+|.-.. +.++..|.++++++|+|++.++- .-.-.....+...+. .
T Consensus 216 ~v~l~iwDtaGQe~~-------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRDE-------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhhh-------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 367899999998542 45578899999988877765441 111123333443332 2
Q ss_pred CCCceEEeeccCccc
Q 017631 205 TGERTFGVLTKLDLM 219 (368)
Q Consensus 205 ~~~~~i~VltK~D~~ 219 (368)
...++++|+||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 357899999999986
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.27 E-value=0.024 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 365
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.26 E-value=0.022 Score=52.92 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 163 LEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 163 ~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+.+..+...+.+.++.+++|++. ... ...+...+..+.. +.|+++|+||+|+.++.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~-~d~--~~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDI-FDF--NGSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEET-TSH--HHHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCcEEEEEEEC-CCC--cccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 44577778888888877665544 321 1122122233322 68999999999998654
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.21 E-value=0.025 Score=47.94 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.5
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~ 58 (368)
.|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999984
No 367
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.19 E-value=0.029 Score=51.83 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=44.4
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCC---------CcccchHHHHHHHhhCC----
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPAN---------QDLATSDAVKLSREVDP---- 204 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~---------~~~~~~~~~~l~~~~~~---- 204 (368)
...+.|+||+|.-.. +.+...|.++++++|+|++-+. ..-.-..+..+...+..
T Consensus 182 ~v~l~iwDtaGQe~~-------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG-------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh-------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 457899999998442 4456789999998887765430 11111233333333322
Q ss_pred CCCceEEeeccCcccC
Q 017631 205 TGERTFGVLTKLDLMD 220 (368)
Q Consensus 205 ~~~~~i~VltK~D~~~ 220 (368)
...|+++|+||+|+..
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3589999999999863
No 368
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.15 E-value=0.029 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 369
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.14 E-value=0.026 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.12 E-value=0.022 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+++|..||||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 371
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.025 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 38999999999999999999964
No 372
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.09 E-value=0.026 Score=46.88 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g 59 (368)
-+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999863
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.07 E-value=0.027 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.06 E-value=0.03 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.04 E-value=0.029 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 376
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.03 E-value=0.022 Score=48.64 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.99 E-value=0.025 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
...++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999874
No 378
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.93 E-value=0.023 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 39999999999999999999964
No 379
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.93 E-value=0.031 Score=46.26 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999999764
No 380
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.93 E-value=0.023 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
-.++++|+.|||||||+++|+|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999999953
No 381
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.028 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 49999999999999999999964
No 382
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.88 E-value=0.029 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999999964
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.84 E-value=0.031 Score=46.25 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 384
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.83 E-value=0.027 Score=55.74 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 39999999999999999999964
No 385
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.83 E-value=0.025 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
|+++|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999885
No 386
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.82 E-value=0.033 Score=46.14 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+++|.+||||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 387
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.81 E-value=0.032 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999974
No 388
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.80 E-value=0.044 Score=45.89 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|.+||||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.80 E-value=0.022 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++|+|++|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999985
No 390
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.78 E-value=0.037 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 391
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.78 E-value=0.027 Score=55.79 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 39999999999999999999964
No 392
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.77 E-value=0.082 Score=45.90 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999963
No 393
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.76 E-value=0.013 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.590 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|..||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 394
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.76 E-value=0.026 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 49999999999999999999964
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.76 E-value=0.033 Score=46.37 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.|+++|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.70 E-value=0.028 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
No 397
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.68 E-value=0.026 Score=56.01 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 38999999999999999999964
No 398
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.66 E-value=0.049 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 399
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.62 E-value=0.035 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g 59 (368)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.61 E-value=0.035 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g 59 (368)
...|+|+|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999873
No 401
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.61 E-value=0.032 Score=47.13 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 402
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.57 E-value=0.025 Score=52.58 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 165 IETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 165 ~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+.++...+...++.++++++..... ......+.+.+. ++|+++|+||+|+.++.
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~--~s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFN--GSFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSG--GGCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHhhccCcEEEEEEECCCCC--CchhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 4677777888888777666544322 111111222222 68999999999998754
No 403
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.54 E-value=0.035 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||+++|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 404
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.54 E-value=0.037 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346999999999999999999864
No 405
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.49 E-value=0.066 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.+++.|++|+||||+..+|+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888865
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.49 E-value=0.044 Score=46.68 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 407
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.45 E-value=0.04 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|.+|||||||..+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 408
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.44 E-value=0.094 Score=44.44 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhcCCCeEEEEEeeCCCcccc-hHHH-HHHHhhCC----CCCceEEeeccC-cccCCc--chHHHhhhCCC
Q 017631 163 LEIETMVRSYIEKPNCLILAITPANQDLAT-SDAV-KLSREVDP----TGERTFGVLTKL-DLMDKG--TNALDILEGRS 233 (368)
Q Consensus 163 ~~~~~~~~~~~~~~d~iil~v~~~~~~~~~-~~~~-~l~~~~~~----~~~~~i~VltK~-D~~~~~--~~~~~~~~~~~ 233 (368)
+.++.+.+.|..++|++|+||+++...... .+.+ ++...++. .+.|+++..||. |....- .++.+.+.-..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~ 192 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 192 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC
Confidence 345788999999999999888776543222 1111 11222222 467888888996 563221 23333332222
Q ss_pred ccCCCCeE--EEEeCCccccccCccH
Q 017631 234 YPLQHPWV--GIVNRSQADINKNVDM 257 (368)
Q Consensus 234 ~~~~~g~~--~v~~~s~~~~~~~~~~ 257 (368)
+...|+ .+...+++|+.++++.
T Consensus 193 --l~R~W~Iq~csA~TGeGL~EGLdW 216 (227)
T 3l82_B 193 --LNHPWLVQDTEAETLTGFLNGIEW 216 (227)
T ss_dssp --GCSCEEEEEEETTTCTTHHHHHHH
T ss_pred --CCCCEEEEEeECCCCcCHHHHHHH
Confidence 235676 3455555555444433
No 409
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.43 E-value=0.075 Score=43.29 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.+.+++.|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 410
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.42 E-value=0.035 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999974
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.41 E-value=0.03 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999999974
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.39 E-value=0.042 Score=46.71 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 413
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.39 E-value=0.065 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.+|.+++.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4577999999999999999999875
No 414
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.38 E-value=0.061 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
-|+++|++|+|||+|+.++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999863
No 415
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.38 E-value=0.091 Score=47.40 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=36.1
Q ss_pred HHHHhhcCCCeEEEEEeeCC-CcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 168 MVRSYIEKPNCLILAITPAN-QDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 168 ~~~~~~~~~d~iil~v~~~~-~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
+++..+.++|.+++| .++. .++......+++..+...+.+.++|+||+|+.++.
T Consensus 79 l~R~~~anvD~v~~V-~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 79 LIRPPICNVDQAVLV-FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp ETTTTEECCCEEEEE-EESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred hhHHHHHhCCEEEEE-EeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 344568899966654 4554 34444444445544455689999999999999763
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.37 E-value=0.038 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999863
No 417
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.37 E-value=0.042 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|+|+.|||||||+++|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 418
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.31 E-value=0.049 Score=45.66 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
|.|+|.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 419
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.31 E-value=0.056 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
No 420
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.29 E-value=0.039 Score=45.58 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.|+++|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.29 E-value=0.034 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999973
No 422
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.28 E-value=0.083 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
-|+++|++|+|||||+.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 423
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.28 E-value=0.041 Score=46.67 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 424
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.24 E-value=0.047 Score=46.12 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+..+|+|+.|+||||+++||.-
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999863
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.22 E-value=0.033 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=15.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 426
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.20 E-value=0.046 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|||||||++.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999964
No 427
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.19 E-value=0.038 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
-.++++|++|+|||||+..|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999988
No 428
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.17 E-value=0.13 Score=40.69 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|.+.|++|+|||++..+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 44899999999999999999764
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.13 E-value=0.051 Score=46.49 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 430
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.12 E-value=0.039 Score=47.48 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|++|+|||||+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999984
No 431
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.09 E-value=0.0067 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++|+|+.|||||||+++|.|.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999999964
No 432
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.97 E-value=0.056 Score=43.75 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~ 58 (368)
....|+++|.+||||||+.+.|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999985
No 433
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.96 E-value=0.68 Score=48.20 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=18.0
Q ss_pred eEEEECCCCCCHHHHHHHh
Q 017631 39 SVAVVGGQSSGKSSVLESI 57 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL 57 (368)
.++|+|+.++||||+++.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 434
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.95 E-value=0.043 Score=46.46 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|.+||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 435
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.93 E-value=0.039 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++++|+.|+|||||++.|+|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 48999999999999999999964
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.052 Score=53.89 Aligned_cols=22 Identities=18% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~~ 61 (368)
++++|+.|||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999975
No 437
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.85 E-value=0.045 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g 59 (368)
..|.++++|++|+||||++++|.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999988
No 438
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.78 E-value=1.6 Score=39.55 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=20.5
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhC
Q 017631 36 ALPS-VAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 36 ~lp~-i~vvG~~saGKSSllnaL~g 59 (368)
.+|. +.+.|++|+|||++..++..
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHH
Confidence 4555 99999999999999998864
No 439
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.76 E-value=0.11 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|.++|.|++|+|||||++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 440
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.74 E-value=0.061 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g 59 (368)
-..|+++|..||||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999864
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.73 E-value=0.059 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+|.|.+||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 442
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.68 E-value=0.8 Score=39.90 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=50.0
Q ss_pred CCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCC--CCceEEeecc
Q 017631 138 VVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPT--GERTFGVLTK 215 (368)
Q Consensus 138 ~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~--~~~~i~VltK 215 (368)
..+++|||+|+... ..+...+..+|.+|+++.+... .......+.+.+... ..++.+|+|+
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~--s~~~~~~~~~~l~~~~~~~~~~vv~N~ 206 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKW--AVESLDLFNFFVRKLNLFLPIFLIITR 206 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTT--HHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChH--HHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 45899999998643 1244556679977766655332 223333344444333 3467799999
Q ss_pred CcccCCcchHHHhhhCCCccCCCCeEEEEeCC
Q 017631 216 LDLMDKGTNALDILEGRSYPLQHPWVGIVNRS 247 (368)
Q Consensus 216 ~D~~~~~~~~~~~~~~~~~~~~~g~~~v~~~s 247 (368)
++......+..+.+.. ...+....+..
T Consensus 207 ~~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 207 FKKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp ECTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred ccCcchHHHHHHHHhc-----CcccceecCcH
Confidence 9544334445555542 33455555543
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.65 E-value=0.069 Score=45.96 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|+|.+||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 444
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.62 E-value=0.11 Score=41.02 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
.-|.+.|++|+|||++..+|...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 34889999999999999998765
No 445
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.60 E-value=0.099 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.+.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 455999999999999999998753
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.60 E-value=0.062 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~ 58 (368)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 447
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.48 E-value=0.043 Score=48.00 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+++|.+||||||+...|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 448
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.34 E-value=0.11 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 017631 40 VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 40 i~vvG~~saGKSSllnaL~g~ 60 (368)
|+++|++|+|||+|+++|.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
No 449
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.29 E-value=0.07 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=18.9
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~ 58 (368)
...+|+|+.|+||||+++||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999984
No 450
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.27 E-value=0.081 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
-+.+++.|++|+|||+|+.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998753
No 451
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.24 E-value=0.17 Score=44.41 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..+.+++.|++|+|||+|..++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999998763
No 452
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.20 E-value=0.086 Score=45.55 Aligned_cols=21 Identities=43% Similarity=0.460 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 017631 38 PSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~ 58 (368)
..|+|+|.+||||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999997
No 453
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.15 E-value=0.2 Score=43.52 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+-|++.|++|+|||++..++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.00 E-value=0.089 Score=44.52 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+++|+|||||+|.-..|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 455
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.99 E-value=0.078 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g 59 (368)
.-|.++|+|.+|||||+++|+|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 456
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.95 E-value=0.07 Score=49.54 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=19.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 017631 37 LPSVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~ 58 (368)
-...+++|+.||||||+++||.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999985
No 457
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.93 E-value=0.56 Score=40.91 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=39.2
Q ss_pred CCCCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceE-Eeecc
Q 017631 137 NVVNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTF-GVLTK 215 (368)
Q Consensus 137 ~~~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i-~VltK 215 (368)
...+++|||+|+.... ..+....+..+|.+|+++.+.. .......+.++.+...+.+.+ +|+|+
T Consensus 127 ~~yD~ViID~pp~~~~-------------~~~~~~~~~~aD~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~ 191 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGD-------------APLTVMQDAKPTGVVVVSTPQE--LTAVIVEKAINMAEETNTSVLGLVENM 191 (262)
T ss_dssp CSCSEEEEECCSSSSS-------------HHHHHHHHHCCSEEEEEECSSS--CCHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred cCCCEEEEECcCCCch-------------HHHHHHhhccCCeEEEEecCcc--chHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 3468999999986431 1111111225787776654432 333444455555555566776 88999
Q ss_pred Ccc
Q 017631 216 LDL 218 (368)
Q Consensus 216 ~D~ 218 (368)
.|.
T Consensus 192 ~~~ 194 (262)
T 2ph1_A 192 SYF 194 (262)
T ss_dssp CCE
T ss_pred Ccc
Confidence 985
No 458
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.93 E-value=0.096 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
.-|++.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999998763
No 459
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.89 E-value=0.064 Score=48.76 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
...+|+|+.|||||||++||..
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4799999999999999999984
No 460
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.15 Score=46.27 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..+.+.+.|+||+|||+++++++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999753
No 461
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.82 E-value=0.062 Score=47.67 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 462
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.80 E-value=0.071 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
...+++|+.|+||||++++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4689999999999999999986
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.75 E-value=0.093 Score=45.21 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g 59 (368)
-..|+++|.+||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999875
No 464
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.75 E-value=0.089 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 465
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.71 E-value=0.091 Score=45.80 Aligned_cols=22 Identities=50% Similarity=0.594 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+|.|.+||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999855
No 466
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.64 E-value=0.057 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.++|+|+.|||||||++.|+|.-
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999974
No 467
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.63 E-value=0.17 Score=44.65 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=39.0
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceE-EeeccCc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTF-GVLTKLD 217 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i-~VltK~D 217 (368)
.+++|||||+...... +......+|.+|+++.+.. .......+..+.+...+.+.+ +|+|++|
T Consensus 192 yD~VIIDtpp~~~~~d--------------~~~l~~~aD~vilVv~~~~--~~~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD--------------AQLFSKFTGNVVYVVNSEN--NNKDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTCSH--------------HHHHHHHHCEEEEEEETTS--CCHHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchHHH--------------HHHHHHHCCEEEEEEeCCC--CcHHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 4899999999754211 1122345787776665433 223444445556665566766 7799998
Q ss_pred cc
Q 017631 218 LM 219 (368)
Q Consensus 218 ~~ 219 (368)
..
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 468
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=91.61 E-value=0.024 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++++|+.|||||||+++|.+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999553
No 469
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.54 E-value=0.11 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+|+|++++|||||..+|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999865
No 470
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.52 E-value=0.38 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.++|+|+.|+|||||++.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 4999999999999999998643
No 471
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.52 E-value=0.084 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~~ 61 (368)
..++|+|+.|+|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 468999999999999999999854
No 472
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.40 E-value=0.09 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.+++||+.|||||||++.|+|.-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 39999999999999999999963
No 473
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.33 E-value=0.12 Score=46.05 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~ 58 (368)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999997
No 474
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.32 E-value=0.14 Score=43.75 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=18.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.|+|+|+|||||+|....|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999988874
No 475
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.10 E-value=0.1 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRDF 62 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~~ 62 (368)
.++++|+.|||||||++.|+|..+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 389999999999999999996543
No 476
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.05 E-value=0.11 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
+.|+|+|+++||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 56899999999999999999743
No 477
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.87 E-value=0.1 Score=45.76 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
...|+|.|..||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998753
No 478
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.79 E-value=0.31 Score=44.15 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..+.|++.|++|+|||+|..++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999999653
No 479
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.77 E-value=0.057 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~ 60 (368)
.|+++|..|||||||+++|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 4899999999999999999985
No 480
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.74 E-value=0.15 Score=43.30 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.++|.|++|+|||||+.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 481
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.72 E-value=0.25 Score=43.63 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..-+++.|++|+|||+|+.++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345999999999999999999764
No 482
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.68 E-value=0.11 Score=45.80 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCC
Q 017631 167 TMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDK 221 (368)
Q Consensus 167 ~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~ 221 (368)
..+...+.++|.++.|+ ++..+..... ..+. +- +++.++|+||+|++++
T Consensus 13 ~~~~~~l~~~D~vl~Vv-Dar~P~~~~~-~~l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVR-DARAPFATSA-YGVD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp HHHHHHHTTCSEEEEEE-ETTSTTTTSC-TTSC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHhhCCEEEEEe-eCCCCCcCcC-hHHH--hc--CCCcEEEEECccCCCH
Confidence 44678899999776555 4443332211 1111 21 7999999999999975
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.68 E-value=0.18 Score=42.56 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=39.6
Q ss_pred CCCeEEEeCCCC-cccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCC-CCCceEEeecc
Q 017631 138 VVNLTLIDLPGI-TKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDP-TGERTFGVLTK 215 (368)
Q Consensus 138 ~~~l~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~-~~~~~i~VltK 215 (368)
..+++|||+|+. ... .+...+..+|.+|+++.+.. .......++++.+.. .+.+..+|+|+
T Consensus 67 ~yD~viiD~p~~~~~~---------------~~~~~l~~aD~viiv~~~~~--~~~~~~~~~~~~l~~~~~~~~~vv~N~ 129 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------------DLEALADGCDLLVIPSTPDA--LALDALMLTIETLQKLGNNRFRILLTI 129 (209)
T ss_dssp GCSEEEEEEECCCSSS---------------HHHHHHHTSSEEEEEECSSH--HHHHHHHHHHHHHHHTCSSSEEEEECS
T ss_pred cCCEEEEeCCCCcCcH---------------HHHHHHHHCCEEEEEecCCc--hhHHHHHHHHHHHHhccCCCEEEEEEe
Confidence 358999999987 431 23455678997766554422 222233333333332 14668899999
Q ss_pred CcccC
Q 017631 216 LDLMD 220 (368)
Q Consensus 216 ~D~~~ 220 (368)
+|...
T Consensus 130 ~~~~~ 134 (209)
T 3cwq_A 130 IPPYP 134 (209)
T ss_dssp BCCTT
T ss_pred cCCcc
Confidence 99764
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.66 E-value=0.13 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.|+|+|+++||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3699999999999999999875
No 485
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.63 E-value=0.1 Score=52.44 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.1
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 017631 39 SVAVVGGQSSGKSSVLESIV 58 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~ 58 (368)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 38999999999999999865
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.56 E-value=0.14 Score=47.86 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
.-+.++|+|.+|+|||++++.|++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 487
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.53 E-value=0.14 Score=47.19 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=31.6
Q ss_pred hhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCceEEeeccCcccCCc
Q 017631 172 YIEKPNCLILAITPANQDLATSDAVKLSREVDPTGERTFGVLTKLDLMDKG 222 (368)
Q Consensus 172 ~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~~i~VltK~D~~~~~ 222 (368)
.+.+.|.++ +|++...++......+++......+.+.++|+||+|++++.
T Consensus 127 i~anvD~v~-iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 127 IAANIDQIV-IVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EEECCCEEE-EEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HHhcCCEEE-EEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 467999766 45555444433333333333333468889999999999764
No 488
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.26 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.7
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPS-VAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~-i~vvG~~saGKSSllnaL~g~ 60 (368)
..|+ |.+.|+||+|||+|..|+++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4455 999999999999999999864
No 489
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.35 E-value=0.38 Score=42.85 Aligned_cols=66 Identities=15% Similarity=0.071 Sum_probs=39.7
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCCCc-eEEeeccCc
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTGER-TFGVLTKLD 217 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~~~-~i~VltK~D 217 (368)
.+++|||||+...... +......+|.+|+++.+.... ........+.+...+.+ .-+|+|++|
T Consensus 202 yD~VIIDtpp~~~~~d--------------a~~l~~~aD~vllVv~~~~~~--~~~~~~~~~~l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD--------------AAIVGRHVGTTLMVARYAVNT--LKEVETSLSRFEQNGIPVKGVILNSIF 265 (286)
T ss_dssp CSEEEEECCCTTTCTH--------------HHHHTTTCSEEEEEEETTTSB--HHHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred CCEEEEcCCCCcchHH--------------HHHHHHHCCeEEEEEeCCCCc--HHHHHHHHHHHHhCCCCEEEEEEcCcc
Confidence 4799999999865211 233456799877766553322 23333444555444444 447799998
Q ss_pred ccC
Q 017631 218 LMD 220 (368)
Q Consensus 218 ~~~ 220 (368)
...
T Consensus 266 ~~~ 268 (286)
T 3la6_A 266 RRA 268 (286)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 490
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.31 E-value=0.12 Score=46.11 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
-.-|++.|++|+|||+++.++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999864
No 491
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.29 E-value=0.14 Score=46.35 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|+|+|.+|||||||..+|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999874
No 492
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.27 E-value=0.15 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
+.|+|+|+++||||||...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999999974
No 493
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.24 E-value=0.15 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g 59 (368)
..|+++|.+||||||+.++|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999875
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.17 E-value=0.11 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 017631 39 SVAVVGGQSSGKSSVLESIVGRD 61 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g~~ 61 (368)
.+.|+|++|+|||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999864
No 495
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.15 E-value=0.4 Score=42.91 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 017631 36 ALPSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 36 ~lp~i~vvG~~saGKSSllnaL~g~ 60 (368)
..|.+++.|++|+|||+++.++...
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 496
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.14 E-value=0.62 Score=40.23 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCcccCCCCCChhHHHHHHHHHHHhhcCCCeEEEEEeeCCCcccchHHHHHHHhhCCCC---------Cce
Q 017631 139 VNLTLIDLPGITKVAVEGQPESVVLEIETMVRSYIEKPNCLILAITPANQDLATSDAVKLSREVDPTG---------ERT 209 (368)
Q Consensus 139 ~~l~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil~v~~~~~~~~~~~~~~l~~~~~~~~---------~~~ 209 (368)
.+++|||+|+-.. ..+...+..+|.+|+++.+. ........++++.+...+ .+.
T Consensus 114 yD~viiD~p~~~~---------------~~~~~~l~~ad~vi~v~~~~--~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~ 176 (260)
T 3q9l_A 114 FEFIVCDSPAGIE---------------TGALMALYFADEAIITTNPE--VSSVRDSDRILGILASKSRRAENGEEPIKE 176 (260)
T ss_dssp CSEEEEECCSSSS---------------HHHHHHHHTCSEEEEEECSS--HHHHHHHHHHHHHHTTSSHHHHTTCSCCEE
T ss_pred CCEEEEcCCCCCC---------------HHHHHHHHhCCEEEEEecCC--hhHHHHHHHHHHHHHHhccccccccCCcce
Confidence 5899999998543 12445567899777666442 222334444555555433 467
Q ss_pred EEeeccCccc
Q 017631 210 FGVLTKLDLM 219 (368)
Q Consensus 210 i~VltK~D~~ 219 (368)
.+|+|++|..
T Consensus 177 ~~v~N~~~~~ 186 (260)
T 3q9l_A 177 HLLLTRYNPG 186 (260)
T ss_dssp EEEEEEECHH
T ss_pred EEEEecCCcc
Confidence 8999999864
No 497
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.10 E-value=0.092 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=17.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 017631 37 LPSVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 37 lp~i~vvG~~saGKSSllnaL~g 59 (368)
.+.|+|.|..||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 498
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.97 E-value=0.15 Score=43.82 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999776653
No 499
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.96 E-value=0.15 Score=44.03 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 017631 39 SVAVVGGQSSGKSSVLESIVG 59 (368)
Q Consensus 39 ~i~vvG~~saGKSSllnaL~g 59 (368)
.|++.|..||||||+.+.|..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 500
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.93 E-value=0.16 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 017631 38 PSVAVVGGQSSGKSSVLESIVGR 60 (368)
Q Consensus 38 p~i~vvG~~saGKSSllnaL~g~ 60 (368)
+.|+|+|++++|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
Done!