BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017633
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/359 (68%), Positives = 291/359 (81%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLRL
Sbjct: 74 AHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLM 133
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A
Sbjct: 134 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEA 193
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+A
Sbjct: 194 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA 253
Query: 190 YGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMT
Sbjct: 254 YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 313
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N
Sbjct: 314 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 373
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 374 YEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 432
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/359 (68%), Positives = 291/359 (81%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+
Sbjct: 74 AHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIM 133
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A
Sbjct: 134 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEA 193
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+A
Sbjct: 194 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA 253
Query: 190 YGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMT
Sbjct: 254 YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 313
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N
Sbjct: 314 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 373
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 374 YEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 432
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/359 (68%), Positives = 291/359 (81%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+
Sbjct: 69 AHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIM 128
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A
Sbjct: 129 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEA 188
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+A
Sbjct: 189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA 248
Query: 190 YGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMT
Sbjct: 249 YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 308
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N
Sbjct: 309 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 368
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 369 YEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/359 (68%), Positives = 291/359 (81%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLRL
Sbjct: 69 AHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLM 128
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A
Sbjct: 129 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEA 188
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEV+TGFR+A
Sbjct: 189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA 248
Query: 190 YGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMT
Sbjct: 249 YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 308
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N
Sbjct: 309 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 368
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 369 YEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/359 (67%), Positives = 291/359 (81%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+
Sbjct: 69 AHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIM 128
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A
Sbjct: 129 RAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEA 188
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEV+TGFR+A
Sbjct: 189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA 248
Query: 190 YGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMT
Sbjct: 249 YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMT 308
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N
Sbjct: 309 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHN 368
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 369 YEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/359 (68%), Positives = 293/359 (81%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
++ +V+ AL ++KGTSFGAPCLLEN+LAEMVI+AVPS+EMVRFVNSGTEACM VLRL
Sbjct: 53 AHPEVIDALHAALEKGTSFGAPCLLENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLM 112
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
RA+T RE++IKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK T TLTAP+ND+ A
Sbjct: 113 RAYTQREKVIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYNDLEA 172
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
+ LFE +IA +ILEPVVGN+GFI P FL +R +TK+ GALL+FDEVMTGFR+A
Sbjct: 173 VSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIA 232
Query: 190 YGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 249
YGGAQE FGVTPD PVGAYGGR +IM+MVAPAGP+YQAGTLSGNPLAMT
Sbjct: 233 YGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMT 292
Query: 250 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 309
AGI TL+ L PG+YE+L++ITG+L QG++DA ++ GH +CGG+ISGMFG FFT GPV N
Sbjct: 293 AGIKTLEILSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCGGHISGMFGLFFTAGPVTN 352
Query: 310 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 368
+E AK+S+ KFA F+RGMLE+G+Y APSQFEAGFTSLAH+ DI+ TI AA VL Q+
Sbjct: 353 YEQAKQSDLKKFAAFHRGMLEQGIYLAPSQFEAGFTSLAHTEADIERTIAAARTVLSQL 411
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/364 (53%), Positives = 251/364 (68%), Gaps = 1/364 (0%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL + +V+ +L + + GTSFGAP +EN LA++VI VPS+E+VR V+SGTEA M
Sbjct: 73 LILGHTNDRVVESLKKVAEYGTSFGAPTEVENELAKLVIDRVPSVEIVRMVSSGTEATMS 132
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
LRLAR +TGR +I+KFEGCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T P+
Sbjct: 133 ALRLARGYTGRNKILKFEGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPY 192
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ +++ F+ +IA +I+EPV GN G + P+ FL +R IT++ G+LLIFDEVMT
Sbjct: 193 NDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMT 252
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFR+ Y AQ YFGVTPD PVGAYGG+ +IME +AP+GP+YQAGTLSGN
Sbjct: 253 GFRVDYNCAQGYFGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGN 312
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
PLAMTAG+ TLK+L P +Y+ K L +GI A + G M GFFFT
Sbjct: 313 PLAMTAGLETLKQLT-PDSYKNFIKKGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFFTN 371
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364
PV N+E AK S+ FA +Y+GM EGV+ PSQFE F S AH+ +DI++TI AAEKV
Sbjct: 372 EPVINYETAKASDLKLFASYYKGMANEGVFLPPSQFEGLFLSTAHTDEDIENTIQAAEKV 431
Query: 365 LRQI 368
+I
Sbjct: 432 FAEI 435
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 182/362 (50%), Positives = 233/362 (64%), Gaps = 2/362 (0%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL ++ +VLA + ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M
Sbjct: 64 LILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMS 123
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
LRLAR +TGR I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +
Sbjct: 124 ALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY 183
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND L + + EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMT
Sbjct: 184 NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMT 242
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFRLA+GGA E G+ PD P AY GRR+IME VAP GP+YQAGTLSGN
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGN 302
Query: 245 PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 303
PLAM AG+ TL+ L+E PG Y YL + L G+ + K+ G + M FFT
Sbjct: 303 PLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFT 362
Query: 304 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 363
EGPV F+DA++++T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K
Sbjct: 363 EGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRK 422
Query: 364 VL 365
L
Sbjct: 423 AL 424
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 341 bits (874), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 175/364 (48%), Positives = 230/364 (63%), Gaps = 1/364 (0%)
Query: 6 ILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 65
IL ++ + A+ E +++G SFGAP E A++V VP+ + VR VNSGTEA
Sbjct: 66 ILGHNHPAIRQAVIEAVERGLSFGAPTEXEVKXAQLVTDLVPTXDXVRXVNSGTEATXSA 125
Query: 66 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 125
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +N
Sbjct: 126 IRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN 185
Query: 126 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185
D++++ FE E+A II+EPV GN I P P+FL +R + E GALLI DEV TG
Sbjct: 186 DLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTG 245
Query: 186 FRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 245
FR+A GAQ+Y+ V PD PVGA+GGRR++ +AP GP+YQAGTLSGNP
Sbjct: 246 FRVALAGAQDYYHVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNP 305
Query: 246 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 305
+A AG L + + G YE L ++T L G+ A K+ + ++ G FG FFT
Sbjct: 306 IAXAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGXFGLFFTNA 365
Query: 306 P-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364
V ++D + +F RF+ LEEGVY APS FEAGF SLAHS++DIQ T+ AA +
Sbjct: 366 DTVTCYQDVXNCDVERFKRFFHLXLEEGVYLAPSAFEAGFXSLAHSNEDIQKTVNAARRC 425
Query: 365 LRQI 368
++
Sbjct: 426 FAKL 429
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 340 bits (871), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 176/341 (51%), Positives = 222/341 (65%), Gaps = 1/341 (0%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA LRLAR +
Sbjct: 73 RVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRXVNSGTEATXSALRLARGY 132
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +ND+ +++
Sbjct: 133 TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKY 192
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEV TGFR+AY
Sbjct: 193 AFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNC 252
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 252
Q Y+GVTPD PVGAYGG+ +I VAP+GP+YQAGTLSGNPLA AG
Sbjct: 253 GQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGY 312
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
TL +L P +Y + L G+ A +K G G FFT+ PV N++
Sbjct: 313 ETLVQLT-PESYVEFERKAEXLEAGLRKAAEKHGIPHHINRAGSXIGIFFTDEPVINYDA 371
Query: 313 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDD 353
AK S FA +YR +E+GV+ PSQFE F S HS D
Sbjct: 372 AKSSNLQFFAAYYREXVEQGVFLPPSQFEGLFLSTVHSDAD 412
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 311 bits (796), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 153/356 (42%), Positives = 222/356 (62%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
II ++ + A+ + G +G P LE A+ + A P+++ VRFVNSGTEA
Sbjct: 67 IITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKXLKEAXPALDKVRFVNSGTEAVXT 126
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+R+ARA+TGR +I KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T PF
Sbjct: 127 TIRVARAYTGRTKIXKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF 186
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
N+V L+ + E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV+T
Sbjct: 187 NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT 246
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
FR YGGAQ+ GVTPD P+GAYGG+++I E VAP GP YQAGT +GN
Sbjct: 247 AFRFXYGGAQDLLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGN 306
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P + +GI L+ L++ G YE L+++ L +GI++ K I + G +FT
Sbjct: 307 PASXASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTT 366
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 360
+ +++ A+ ++ F +F++ L+EGV APS++EA F + H+ +DI++TI A
Sbjct: 367 NTIEDYDAAQDTDGEXFGKFFKLXLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEA 422
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 205/364 (56%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+IL + +VL A+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA M
Sbjct: 68 LILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMT 127
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
+RLAR +TGR+ I+KF+GCYHG D LV AGS A G+P S GVP+ TL P+
Sbjct: 128 AIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY 187
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
NDV ALE +F IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV+T
Sbjct: 188 NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT 247
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 244
GFRL GAQ YF + D PVGA G R++M ++ P G ++ AGT + +
Sbjct: 248 GFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAH 307
Query: 245 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 304
P+ M AG+ TLK L+E Y + L + + + G + M F
Sbjct: 308 PITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGV 367
Query: 305 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 364
V N A+K++ + + + ML GV+ APS EA FT L H + ++ +
Sbjct: 368 EEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLRSS 427
Query: 365 LRQI 368
L+ +
Sbjct: 428 LKTV 431
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 160/350 (45%), Gaps = 20/350 (5%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 72
++ A+ E M+ G + LLE LA ++ P IE +RF NSGTEA + L A F
Sbjct: 107 EIRDAVIEAMQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHF 166
Query: 73 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 132
TGR +I+ F G YHG LG P P ++ L P+ND
Sbjct: 167 TGRRKIVVFSGGYHG-------------GVLGFGARPS-PTTVPFDFLVLPYNDAQTARA 212
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 192
E + EIA +++EP+ G SG I +PDFL A+R + GALL+FDEVMT RLA G
Sbjct: 213 QIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAPHG 271
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAG 251
G+ D GA+GGR D+M + P GP+ +GT + N + M AG
Sbjct: 272 LANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAG 331
Query: 252 IHTLKRLKEPGTYEYLNKITGELTQGIIDA-GKKAGHAICGGYISGMFGFFFTEGPVYNF 310
L +L P L + GE + ++A G A+ I + F +G V +
Sbjct: 332 YAGLTKLFTPEAAGALAE-RGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSS 390
Query: 311 EDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 360
ED + + +L E +Y +P F SL + DI + A
Sbjct: 391 EDLAAVDGRLRQLLFFHLLNEDIYSSPRGFVV--LSLPLTDADIDRYVAA 438
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 158/332 (47%), Gaps = 21/332 (6%)
Query: 10 SYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 69
S+ + AA+ + G + E + AE V PSI++VRF NSGTEA + L A
Sbjct: 117 SHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATA 176
Query: 70 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 129
A TGR+ ++ F+G YHG L+ SG A P A Y + +NDV
Sbjct: 177 TAITGRKTVLAFDGGYHGG----LLNFASGHA----------PTNAPYHVVLGVYNDVEG 222
Query: 130 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 189
+L + + + AAI++EP++G G + + FL+ +R GALLIFDEVMT RL+
Sbjct: 223 TADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS-RLS 281
Query: 190 YGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLA 247
GGAQE G++ D GA+GGRRD+ME PA G AGT + N L
Sbjct: 282 GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILT 341
Query: 248 MTAGIHTLKRLKEPGTYEYLNKITGELTQGI--IDAGKKAGHAICGGYISGMFGFFFTEG 305
M+AG L ++ L+ + I +A G + + F+
Sbjct: 342 MSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTG--LGSLGTIHFSRA 399
Query: 306 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 337
P+ + D + ++ F+ ML +G+Y AP
Sbjct: 400 PIRSAGDVRAADQQLKELFFFHMLRKGIYLAP 431
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 172/376 (45%), Gaps = 21/376 (5%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
++L + +V AA+ E + G + A LE AE +++A PSI +RF SGTE +
Sbjct: 69 LVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLL 128
Query: 65 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 124
LR+ARAFTGR I++FEG YHG D +G G P +PGV T TL
Sbjct: 129 ALRVARAFTGRRMILRFEGHYHGWHD--FSASGYNSHFDGQP-APGVLPETTANTLLIRP 185
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
+D+ + +F N+ +IAA I EPV + G FL + ++ GAL I DEV++
Sbjct: 186 DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS 245
Query: 185 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG--PMYQAGTLS 242
GFR+ G Q V PD P G GGR D+M +++ + GT +
Sbjct: 246 GFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFT 305
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA--GKKAGHAICGGYISGMFGF 300
GNP+ A I + + E +N + G+ + ++ +K + + G S GF
Sbjct: 306 GNPITAAAAIAAIDTILEDDVCAKINDL-GQFAREAMNHLFARKGLNWLAYGRFS---GF 361
Query: 301 FFTEGPVYNFEDAKKSETTKFAR--------FYRGMLEEGVYFAPSQFEAGFTSLAHSSD 352
G N D + AR ++ EGV + F S H +
Sbjct: 362 HLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQHERE 419
Query: 353 DIQHTITAAEKVLRQI 368
++H +T ++VL ++
Sbjct: 420 HVEHLVTTFDRVLDRL 435
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 132/291 (45%), Gaps = 22/291 (7%)
Query: 38 LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95
L E++ VP + V +G+EA +++ARA T R I F G YHG L
Sbjct: 89 LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLAL 148
Query: 96 AGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG--EIAAIIL 146
G + G+ PG A Y P + +S ++ +F+N+ +IAAI++
Sbjct: 149 TGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 205
EPV G+ GF A P F+ +R + E+G +LI DEV +G R A E GV PD
Sbjct: 206 EPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT 265
Query: 206 XXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
P+ GR ++M+ VAP G GT +GNP+A A + LK ++ +
Sbjct: 266 FAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQENLLQ 322
Query: 266 YLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAK 314
N + +L G++ +K H G + M E +N DAK
Sbjct: 323 KANDLGQKLKDGLLAIAEK--HPEIGDVRGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 131/291 (45%), Gaps = 22/291 (7%)
Query: 38 LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95
L E++ VP + V +G+EA +++ARA T R I F G YHG L
Sbjct: 89 LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLAL 148
Query: 96 AGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG--EIAAIIL 146
G + G+ PG A Y P + +S ++ +F+N+ +IAAI++
Sbjct: 149 TGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 205
EPV G GF A P F+ +R + E+G +LI DEV +G R A E GV PD
Sbjct: 206 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT 265
Query: 206 XXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
P+ GR ++M+ VAP G GT +GNP+A A + LK ++ +
Sbjct: 266 FAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQENLLQ 322
Query: 266 YLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAK 314
N + +L G++ +K H G + M E +N DAK
Sbjct: 323 KANDLGQKLKDGLLAIAEK--HPEIGDVRGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 131/291 (45%), Gaps = 22/291 (7%)
Query: 38 LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95
L E++ VP + V +G+EA +++ARA T R I F G YHG L
Sbjct: 89 LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLAL 148
Query: 96 AGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG--EIAAIIL 146
G + G+ PG A Y P + +S ++ +F+N+ +IAAI++
Sbjct: 149 TGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 205
EPV G GF A P F+ +R + E+G +LI DEV +G R A E GV PD
Sbjct: 206 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT 265
Query: 206 XXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
P+ GR ++M+ VAP G GT +GNP+A A + LK ++ +
Sbjct: 266 FAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQENLLQ 322
Query: 266 YLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAK 314
N + +L G++ +K H G + M E +N DAK
Sbjct: 323 KANDLGQKLKDGLLAIAEK--HPEIGDVRGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 130/291 (44%), Gaps = 22/291 (7%)
Query: 38 LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 95
L E++ VP + V +G+EA +++ARA T R I F G YHG L
Sbjct: 89 LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLAL 148
Query: 96 AGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG--EIAAIIL 146
G + G+ PG A Y P + +S ++ +F+N+ +IAAI++
Sbjct: 149 TGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205
Query: 147 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 205
EPV G GF A P F+ +R + E+G +LI DE +G R A E GV PD
Sbjct: 206 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMGVAPDLTT 265
Query: 206 XXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
P+ GR ++M+ VAP G GT +GNP+A A + LK ++ +
Sbjct: 266 FAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQENLLQ 322
Query: 266 YLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAK 314
N + +L G++ +K H G + M E +N DAK
Sbjct: 323 KANDLGQKLKDGLLAIAEK--HPEIGDVRGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 105/222 (47%), Gaps = 18/222 (8%)
Query: 47 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 106
P + V VNSGTEA L+ ARA TGR+ KF G F + ++ P
Sbjct: 102 PELNRVFPVNSGTEANEAALKFARAHTGRK---KFVAAMRG----FSGRTMGSLSVTWEP 154
Query: 107 D--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 164
P +P E + P+NDV AL+ + E AA+ILEPV G G P+FL
Sbjct: 155 KYREPFLPLVEPVEFI--PYNDVEALKRAVDE---ETAAVILEPVQGEGGVRPATPEFLR 209
Query: 165 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRR 223
A R IT+E GALLI DE+ TG R A E+FG+ PD P+G R
Sbjct: 210 AAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMRE 269
Query: 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
++ + G T GNPLAM AG+ ++ L+ +E
Sbjct: 270 EVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERTRLWE 308
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 95/220 (43%), Gaps = 19/220 (8%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPF 92
LA ++ + V F NSGTE+ ++LAR + + + I FE +HG
Sbjct: 75 LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGS 134
Query: 93 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 152
L G G P VP G +Y A ND+ ++ L + E A II+E + G
Sbjct: 135 LSATGQPKFHKGF--EPLVP-GFSY----AKLNDIDSVYKLLDE---ETAGIIIEVIQGE 184
Query: 153 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXX 211
G DFL+ ++ I KE LLI DEV TG R A ++F + PD
Sbjct: 185 GGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLG 244
Query: 212 XXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 251
P+GA R ++ + P T GNPLA AG
Sbjct: 245 GGVPIGAILAREEVAQSFTPGS---HGSTFGGNPLACRAG 281
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 109/240 (45%), Gaps = 38/240 (15%)
Query: 56 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV--------KAGSGVATLGLPD 107
NSG EA +++ARA T ++ ++ F+ YHG + + K+G G P
Sbjct: 146 NSGAEAVENSIKVARAHTRKQAVVAFDYAYHGRTNLTMALTAKSMPYKSGFG------PF 199
Query: 108 SPGVPKGATYETLTAPFND--------------VSALENLFENNKG--EIAAIILEPVVG 151
+P + + ++ P+ D NL + G +AA+I+EP+ G
Sbjct: 200 APEIYRA----PVSYPYRDNLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAG 255
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXX 210
GFI P FL A++R ++N + I DEV TGF R A ++ V PD
Sbjct: 256 EGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAMFACDHENVEPDLIVTAXGI 315
Query: 211 XXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
P+ A GR +IM+ +G GT GNP+A A + T++ ++ G E +I
Sbjct: 316 ADGFPLSAVTGRAEIMDAPHTSG---LGGTFGGNPVACAAALATIETIERDGMVERARQI 372
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 30/250 (12%)
Query: 9 PSYLQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 66
P+ ++ L + GET+ ++ P L L +I A + E V F+NSGTEA
Sbjct: 76 PALVEALKSQGETLWHTSNVFTNEPALR---LGRKLIDATFA-ERVLFMNSGTEANETAF 131
Query: 67 RLARAFTG------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGV-PKGATYE 118
+LAR + + +II F +HG + F V G G P S G PK A +
Sbjct: 132 KLARHYACVRHSPFKTKIIAFHNAFHGRS-LFTVSVG------GQPKYSDGFGPKPA--D 182
Query: 119 TLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 178
+ PFND+ A++ + +++ A+++EP+ G G A P+FL +R + E+ ALL+
Sbjct: 183 IIHVPFNDLHAVKAVMDDHT---CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLV 239
Query: 179 FDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQ 237
FDEV G R A ++GVTPD PV A ++I
Sbjct: 240 FDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGS---H 296
Query: 238 AGTLSGNPLA 247
T GNPLA
Sbjct: 297 GSTYGGNPLA 306
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 56 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD-----------------PFLVKAGS 98
NSG EA +++AR TGR ++ F+ YHG + PF +
Sbjct: 132 NSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYR 191
Query: 99 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 158
A+ L D PG+ T E A +S +E + +AAII+EP+ G GFI P
Sbjct: 192 MPASYPLRDEPGL----TGEE--AARRAISRIET--QIGAQSLAAIIIEPIQGEGGFIVP 243
Query: 159 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVG 217
P FL + ENG + I DEV TGF R A E+ G+ PD P+
Sbjct: 244 APGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAXGIAGGMPLS 303
Query: 218 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 260
A GR ++M+ V GT GNP+ A + L ++E
Sbjct: 304 AVTGRAELMDAVY---AGGLGGTYGGNPVTCAAAVAALGVMRE 343
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 99/222 (44%), Gaps = 24/222 (10%)
Query: 52 VRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCYHGHADPFLVKAGSGVATLGLP 106
V F N+GTEA +++AR + ++ RI+ +HG L +G P
Sbjct: 100 VFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSL--TATGQPKYQKP 157
Query: 107 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166
P VP +E FN+V E+L ++ A+ LEP+ G SG + +FL
Sbjct: 158 FEPLVPGFEYFE-----FNNV---EDLRRKXSEDVCAVFLEPIQGESGIVPATKEFLEEA 209
Query: 167 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGA--YGGRR 223
R++ E ALL+FDEV G R A + +GV PD P+GA R
Sbjct: 210 RKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERA 269
Query: 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
+++E P T GNPLA AG+ +K L + G E
Sbjct: 270 NVLE------PGDHGTTFGGNPLACRAGVTVIKELTKEGFLE 305
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 99/222 (44%), Gaps = 24/222 (10%)
Query: 52 VRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCYHGHADPFLVKAGSGVATLGLP 106
V F N+GTEA +++AR + ++ RI+ +HG L +G P
Sbjct: 88 VFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSL--TATGQPKYQKP 145
Query: 107 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 166
P VP +E FN+V E+L ++ A+ LEP+ G SG + +FL
Sbjct: 146 FEPLVPGFEYFE-----FNNV---EDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEA 197
Query: 167 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGA--YGGRR 223
R++ E ALL+FDEV G R A + +GV PD P+GA R
Sbjct: 198 RKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERA 257
Query: 224 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 265
+++E P T GNPLA AG+ +K L + G E
Sbjct: 258 NVLE------PGDHGTTFGGNPLACRAGVTVIKELTKEGFLE 293
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 100/224 (44%), Gaps = 32/224 (14%)
Query: 56 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-----G 110
NSG EA +++ARA+T R+ ++ F+ YHG + + + P G
Sbjct: 136 NSGAEAVENAVKIARAYTRRQAVVVFDHAYHGRTNLTMAMTAK--------NQPYKHGFG 187
Query: 111 VPKGATYETLTA-PFND--------VSALENLFENNKG--EIAAIILEPVVGNSGFIAPK 159
Y T+ PF D + +L G +AA+++EPV G GF+ P
Sbjct: 188 PFANEVYRVPTSYPFRDGETDGAAAAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPA 247
Query: 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGA 218
P FL A+++ +NGA+ + DEV TGF R A E+ V PD P+ A
Sbjct: 248 PGFLGALQKWCTDNGAVFVADEVQTGFARTGALFACEHENVVPDLIVTAKGIAGGLPLSA 307
Query: 219 YGGRRDIMEMVAPAGPM--YQAGTLSGNPLAMTAGIHTLKRLKE 260
GR +IM+ GP GT GNPLA A + + ++
Sbjct: 308 VTGRAEIMD-----GPQSGGLGGTYGGNPLACAAALAVIDTIER 346
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 21/192 (10%)
Query: 56 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD---PFLVKAGSGVATLGLPDSPGVP 112
NSG EA +++AR TGR+ ++ F+ YHG + KA G P +P V
Sbjct: 132 NSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFG-PFAPEVY 190
Query: 113 KGATYETLTAPFND----VSALE------NLFENNKG--EIAAIILEPVVGNSGFIAPKP 160
+ ++ PF + ++ E + E G ++AAII+EP+ G GFI P
Sbjct: 191 R----MPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAE 246
Query: 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAY 219
FL A+ KE G + I DEV +GF R A ++ GV PD P+ A
Sbjct: 247 GFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAI 306
Query: 220 GGRRDIMEMVAP 231
GR D+++ V P
Sbjct: 307 TGRADLLDAVHP 318
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 24/240 (10%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADP 91
LA+ +I A + + V F NSG EA L+LAR F + + I+ F+ +HG
Sbjct: 86 LAKKLIDATFA-DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRT-L 143
Query: 92 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 151
F V AG A D +P + A +ND+++ L +++ A+I+EP+ G
Sbjct: 144 FTVSAGGQPAYS--QDFAPLPADIRH----AAYNDINSASALIDDS---TCAVIVEPIQG 194
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXX 210
G + FL +R + + ALLIFDEV TG R A ++GVTPD
Sbjct: 195 EGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKAL 254
Query: 211 XXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
PVGA + ++ T GNPLA L+ + P E LN +
Sbjct: 255 GGGFPVGALLATEECARVMTVG---THGTTYGGNPLASAVAGKVLELINTP---EMLNGV 308
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 38/240 (15%)
Query: 56 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV--------KAGSGVATLGLPD 107
NSG+EA +++AR+ T + ++ F+ YHG + + K G G P
Sbjct: 129 NSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFG------PF 182
Query: 108 SPGVPKGATYETLTAPFNDVSALENLFENNK----------------GEIAAIILEPVVG 151
+P + + L+ PF D + L + + +AA+++EP+ G
Sbjct: 183 APEIYRA----PLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQG 238
Query: 152 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXX 210
GFI P FL + ++N + I DEV TGF R A E+ G+ PD
Sbjct: 239 EGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAXGI 298
Query: 211 XXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
P+ A GR +IM+ +G GT GNP+A A + T++ ++ G +I
Sbjct: 299 AGGLPLSAVTGRAEIMDSPHVSG---LGGTYGGNPIACAAALATIETIESEGLVARAQQI 355
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 102/238 (42%), Gaps = 22/238 (9%)
Query: 49 IEMVRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCYHGHADPFLVKAGSGVATL 103
+E V F NSGTE+ G + AR + + + I F+ +HG G +L
Sbjct: 93 LERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHSFHGRT--------LGALSL 144
Query: 104 GLPDSPGVP-KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 162
+ P K A +ND+S++E L + AIILE V G G DF
Sbjct: 145 TANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE---KTCAIILESVQGEGGINPANKDF 201
Query: 163 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGG 221
A+R++ E LLI DE+ G R A E+ + PD VGA+
Sbjct: 202 YKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIXTSAKALGCGLSVGAFVI 261
Query: 222 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KEPGTYEYLNKITGELTQGI 278
+ + AG T GNPL + AG++ + + KE E +NK+T L Q +
Sbjct: 262 NQKVASNSLEAGD--HGSTYGGNPL-VCAGVNAVFEIFKEEKILENVNKLTPYLEQSL 316
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 33/292 (11%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHAD 90
LA++++ P+ ++ V F +SG+ + ++A R G+ R++ + G YHG D
Sbjct: 103 LAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--D 160
Query: 91 PFLVKA----GSGVATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGE 140
FL + G+ +L +P VP+ Y+ + +A E + GE
Sbjct: 161 TFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGE 213
Query: 141 IAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 198
+AA+++EPVV G G P +L+ +R I + LLIFDE+ TGF R A ++ G
Sbjct: 214 LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAG 273
Query: 199 VTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTL 255
V+PD + A D+ ++ AG + + T NPLA + ++
Sbjct: 274 VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASV 333
Query: 256 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307
+ L + ++ LT G+ A +A A+ + G G + PV
Sbjct: 334 ELLLGQDWRTRITELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 383
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 33/292 (11%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHAD 90
LA++++ P+ ++ V F +SG+ + ++A R G+ R++ + G YHG D
Sbjct: 128 LAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--D 185
Query: 91 PFLVKA----GSGVATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGE 140
FL + G+ +L +P VP+ Y+ + +A E + GE
Sbjct: 186 TFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGE 238
Query: 141 IAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 198
+AA+++EPVV G G P +L+ +R I + LLIFDE+ TGF R A ++ G
Sbjct: 239 LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAG 298
Query: 199 VTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTL 255
V+PD + A D+ ++ AG + + T NPLA + ++
Sbjct: 299 VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASV 358
Query: 256 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307
+ L + ++ LT G+ A +A A+ + G G + PV
Sbjct: 359 ELLLGQDWRTRITELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 408
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 33/292 (11%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHAD 90
LA++++ P+ ++ V F +SG+ + ++A R G+ R++ + G YHG D
Sbjct: 123 LAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--D 180
Query: 91 PFLVKA----GSGVATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGE 140
FL + G+ +L +P VP+ Y+ + +A E + GE
Sbjct: 181 TFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGE 233
Query: 141 IAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 198
+AA+++EPVV G G P +L+ +R I + LLIFDE+ TGF R A ++ G
Sbjct: 234 LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAG 293
Query: 199 VTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTL 255
V+PD + A D+ ++ AG + T NPLA + ++
Sbjct: 294 VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASV 353
Query: 256 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 307
+ L + ++ LT G+ A +A A+ + G G + PV
Sbjct: 354 ELLLGQDWRTRITELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 403
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 131/324 (40%), Gaps = 46/324 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F YHG D
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHG--DT 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
F G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 F------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R A E+
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
Query: 197 FGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIH 253
+ PD + A R++ E ++ AG T GNPLA A
Sbjct: 263 AEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 323 SLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV------ 374
Query: 314 KKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ AP
Sbjct: 375 ------NMAALQKFFVEQGVWIAP 392
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 18/248 (7%)
Query: 47 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG------HADPFLVKAGSGV 100
P ++ +++G E+ +R+A+ TG+ I+ F +HG A + G G
Sbjct: 100 PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159
Query: 101 ATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNKGEIAAIILEPVVGNS 153
A +G S +P TY ++ ++ L+ F+ + G +AA I EP++ +
Sbjct: 160 AAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSG 216
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXX 212
G I ++ A++R + G LLI DE TG R A + GVTPD
Sbjct: 217 GIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGA 276
Query: 213 XXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 272
P+ A I E G ++ +S +PL G+ L ++ G N +
Sbjct: 277 GLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVVQRDGLVARANVMGD 335
Query: 273 ELTQGIID 280
L +G++D
Sbjct: 336 RLRRGLLD 343
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 18/248 (7%)
Query: 47 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG------HADPFLVKAGSGV 100
P ++ +++G E+ +R+A+ TG+ I+ F +HG A + G G
Sbjct: 100 PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159
Query: 101 ATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNKGEIAAIILEPVVGNS 153
A +G S +P TY ++ ++ L+ F+ + G +AA I EP++ +
Sbjct: 160 AAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSG 216
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXX 212
G I ++ A++R + G LLI DE TG R A + GVTPD
Sbjct: 217 GIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGA 276
Query: 213 XXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 272
P+ A I E G ++ +S +PL G+ L ++ G N +
Sbjct: 277 GLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVVQRDGLVARANVMGD 335
Query: 273 ELTQGIID 280
L +G++D
Sbjct: 336 RLRRGLLD 343
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 18/248 (7%)
Query: 47 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG------HADPFLVKAGSGV 100
P ++ +++G E+ +R+A+ TG+ I+ F +HG A + G G
Sbjct: 98 PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 157
Query: 101 ATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNKGEIAAIILEPVVGNS 153
A +G S +P TY ++ ++ L+ F+ + G +AA I EP++ +
Sbjct: 158 AAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSG 214
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXX 212
G I ++ A++R + G LLI DE TG R A + GVTPD
Sbjct: 215 GIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGA 274
Query: 213 XXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 272
P+ A I E G ++ +S +PL G+ L ++ G N +
Sbjct: 275 GLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVVQRDGLVARANVMGD 333
Query: 273 ELTQGIID 280
L +G++D
Sbjct: 334 RLRRGLLD 341
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 18/248 (7%)
Query: 47 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG------HADPFLVKAGSGV 100
P ++ +++G E+ +R+A+ TG+ I+ F +HG A + G G
Sbjct: 99 PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 158
Query: 101 ATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNKGEIAAIILEPVVGNS 153
A +G S +P TY ++ ++ L+ F+ + G +AA I EP++ +
Sbjct: 159 AAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSG 215
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXX 212
G I ++ A++R + G LLI DE TG R A + GVTPD
Sbjct: 216 GIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGA 275
Query: 213 XXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 272
P+ A I E G ++ +S +PL G+ L ++ G N +
Sbjct: 276 GLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVVQRDGLVARANVMGD 334
Query: 273 ELTQGIID 280
L +G++D
Sbjct: 335 RLRRGLLD 342
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 116/268 (43%), Gaps = 21/268 (7%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLAR 70
+++ AL + K T + NVL E I+ + + V +N+G EA +LAR
Sbjct: 96 KIVNALKSQVDKLT-LTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLAR 154
Query: 71 AFTGRER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDS-----PGVPKGATYETLTAPF 124
+ + I K++ A F + S +++ P S P +P ++ + P+
Sbjct: 155 KWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PY 209
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ALE ++ +AA ++EP+ G +G + P P +L +R + + L I DE+ T
Sbjct: 210 NDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT 267
Query: 185 GF-RLAYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242
G R A +Y V PD PV A DIM + P T
Sbjct: 268 GLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYG 324
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
GNPL I L+ L+E E +K+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKL 352
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 116/268 (43%), Gaps = 21/268 (7%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLAR 70
+++ AL + K T + NVL E I+ + + V +N+G EA +LAR
Sbjct: 96 KIVNALKSQVDKLT-LTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLAR 154
Query: 71 AFTGRER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDS-----PGVPKGATYETLTAPF 124
+ + I K++ A F + S +++ P S P +P ++ + P+
Sbjct: 155 KWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PY 209
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ALE ++ +AA ++EP+ G +G + P P +L +R + + L I DE+ T
Sbjct: 210 NDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT 267
Query: 185 GF-RLAYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242
G R A +Y V PD PV A DIM + P T
Sbjct: 268 GLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYG 324
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
GNPL I L+ L+E E +K+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKL 352
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 116/268 (43%), Gaps = 21/268 (7%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLAR 70
+++ AL + K T + NVL E I+ + + V +N+G EA +LAR
Sbjct: 59 KIVNALKSQVDKLT-LTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLAR 117
Query: 71 AFTGRER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDS-----PGVPKGATYETLTAPF 124
+ + I K++ A F + S +++ P S P +P ++ + P+
Sbjct: 118 KWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PY 172
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ALE ++ +AA ++EP+ G +G + P P +L +R + + L I DE+ T
Sbjct: 173 NDLPALERALQDPN--VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT 230
Query: 185 GF-RLAYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242
G R A +Y V PD PV A DIM + P T
Sbjct: 231 GLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYG 287
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
GNPL I L+ L+E E +K+
Sbjct: 288 GNPLGCRVAIAALEVLEEENLAENADKL 315
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 130/324 (40%), Gaps = 46/324 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F YHG D
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHG--DT 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
F G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 F------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R A E+
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
Query: 197 FGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIH 253
+ PD + A R++ E ++ AG T GNPLA A
Sbjct: 263 AEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 323 SLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV------ 374
Query: 314 KKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ P
Sbjct: 375 ------NMAALQKFFVEQGVWIRP 392
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 131/324 (40%), Gaps = 46/324 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F YHG D
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHG--DT 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
F G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 F------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R A E+
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
Query: 197 FGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIH 253
+ PD + A R++ E ++ AG T GNPLA A
Sbjct: 263 AEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 323 SLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV------ 374
Query: 314 KKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ P
Sbjct: 375 ------NMAALQKFFVEQGVWIRP 392
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 130/324 (40%), Gaps = 46/324 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F YHG D
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRNGYHG--DT 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
F G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 F------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R A E+
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
Query: 197 FGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIH 253
+ PD + A R++ E ++ AG T GNPLA A
Sbjct: 263 AEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLACAAANA 322
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 323 SLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV------ 374
Query: 314 KKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ P
Sbjct: 375 ------NMAALQKFFVEQGVWIRP 392
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 116/268 (43%), Gaps = 21/268 (7%)
Query: 13 QVLAALGETMKKGTSFGAPCLLENVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLAR 70
+++ AL + K T + NVL E I+ + + V +N+G EA +LAR
Sbjct: 96 KIVNALKSQVDKLT-LTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLAR 154
Query: 71 AFTGRER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDS-----PGVPKGATYETLTAPF 124
+ + I K++ A F + S +++ P S P +P ++ + P+
Sbjct: 155 KWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PY 209
Query: 125 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 184
ND+ ALE ++ +AA ++EP+ G +G + P P +L +R + + L I DE+ T
Sbjct: 210 NDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT 267
Query: 185 GF-RLAYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLS 242
G R A +Y V PD PV A DIM + P T
Sbjct: 268 GLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE---HFSTYG 324
Query: 243 GNPLAMTAGIHTLKRLKEPGTYEYLNKI 270
GNPL I L+ L+E E +K+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKL 352
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 101/249 (40%), Gaps = 29/249 (11%)
Query: 43 ISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLV 94
++ + + EMV +N+G EA ++ AR + R II E +HG +
Sbjct: 87 VAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVS 146
Query: 95 KAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 153
+ + G P PG+ + P+ D+ AL+ N AA ILEP+ G +
Sbjct: 147 MSSNEEYKRGFGPMLPGI--------IVIPYGDLEALKAAITPNT---AAFILEPIQGEA 195
Query: 154 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXX 212
G P FL + K+ L + DE+ TG R A ++ VTPD
Sbjct: 196 GINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGXALGG 255
Query: 213 XX-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL---- 267
P+ RDI+ + P T GNPLA I L+ L+E E
Sbjct: 256 GVFPISCAAANRDILGVFEPGS---HGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLG 312
Query: 268 NKITGELTQ 276
K+ G+L +
Sbjct: 313 EKLVGQLKE 321
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 131/313 (41%), Gaps = 44/313 (14%)
Query: 8 FPSYLQVLAALGETMKKGTSFGAPCLLENV----LAEMVISAVPS--IEMVRFVNSGTEA 61
+PS+ +V+ E M+K + A N+ LA+ +++ P + V F NSGTEA
Sbjct: 58 WPSHPEVIKIGIEQMQK-LAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEA 116
Query: 62 CMGVLRLARAFTGRERIIKFEGCYHGH-----------------ADPFLVKAGSGVATLG 104
+++ + TGR+ II F G +HG PF+ GV +
Sbjct: 117 IEASIKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFM----PGVIHVP 171
Query: 105 LPDSPGVPKGAT-YETLTAPFNDVSAL--ENLFEN--NKGEIAAIILEPVVGNSGFIAPK 159
P+ P YE + N V + +F N E+A I EP+ G G++ P
Sbjct: 172 YPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPP 231
Query: 160 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXX-XXXXPVG 217
+F ++++ K+ G LL+ DEV G R A E F PD P+G
Sbjct: 232 KNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIG 291
Query: 218 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELT 275
A R+D+ P + T GN LA G + +K+ P E + KI E
Sbjct: 292 ATIFRKDL-----DFKPGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNE-IGKIFAEEL 345
Query: 276 QGIIDAGKKAGHA 288
QG+ D + G A
Sbjct: 346 QGLADDVRGIGLA 358
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 130/324 (40%), Gaps = 46/324 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F YHG+
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGNT-- 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 ------FGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R A E+
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
Query: 197 FGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIH 253
+ PD + A R++ E ++ AG T GNPLA A
Sbjct: 263 AEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 323 SLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV------ 374
Query: 314 KKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ P
Sbjct: 375 ------NMAALQKFFVEQGVWIRP 392
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 131/324 (40%), Gaps = 46/324 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F YHG D
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHG--DT 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
F G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 F------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF + A E+
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEH 262
Query: 197 FGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIH 253
+ PD + A R++ E ++ AG T GNPLA A
Sbjct: 263 AEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 323 SLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV------ 374
Query: 314 KKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ P
Sbjct: 375 ------NMAALQKFFVEQGVWIRP 392
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 131/324 (40%), Gaps = 46/324 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F +HG D
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGFHG--DT 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
F G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 F------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 196
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R A E+
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262
Query: 197 FGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIH 253
+ PD + A R++ E ++ AG T GNPLA A
Sbjct: 263 AEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322
Query: 254 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 313
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 323 SLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV------ 374
Query: 314 KKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ P
Sbjct: 375 ------NMAALQKFFVEQGVWIRP 392
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 131/325 (40%), Gaps = 48/325 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADP 91
L +++ P +E V +SG+ A +++A + R+R + F YHG D
Sbjct: 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHG--DT 148
Query: 92 FLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSALENLFENNK 138
F G ++ PD+ + KG E L AP D+ L ++
Sbjct: 149 F------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHR 202
Query: 139 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG--AQE 195
EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF A G A E
Sbjct: 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG-ATGKLFACE 261
Query: 196 YFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGI 252
+ + PD + A R++ E ++ AG T GNPLA A
Sbjct: 262 HAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAAN 321
Query: 253 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 312
+L L+ + + I +L + + A + + + G G T PV
Sbjct: 322 ASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTHPV----- 374
Query: 313 AKKSETTKFARFYRGMLEEGVYFAP 337
A + +E+GV+ P
Sbjct: 375 -------NMAALQKFFVEQGVWIRP 392
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 7/168 (4%)
Query: 120 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 179
L P++D+ ALE ++ + A I+EPV G +G I P + + + K+ L +
Sbjct: 175 LKVPYDDLEALEKELQD--PNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVA 232
Query: 180 DEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQ 237
DEV TG R ++GV PD P+ A D+M ++ P
Sbjct: 233 DEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGE---H 289
Query: 238 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 285
T GNPLA + LK L E +K+ Q + + K +
Sbjct: 290 GSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDS 337
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 7/159 (4%)
Query: 122 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 181
P++D+ ALE ++ + A I+EP+ G +G I P ++L + I K+ L + DE
Sbjct: 196 VPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE 253
Query: 182 VMTGF-RLAYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAG 239
V TG R ++ V PD P+ A DIM ++ P
Sbjct: 254 VQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE---HGS 310
Query: 240 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 278
T GNPLA + + L L E K+ G + +
Sbjct: 311 TYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENL 349
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 25 GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRER 77
G +G P + LAE + P ++ V F +SG+E + +++ RA+ + +
Sbjct: 87 GFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTK 144
Query: 78 IIKFEGCYHGH--ADPFLVKAGSGVATLGLP--DSPGVP----------KGATYETLTAP 123
+I YHG A L G P D +P +G E A
Sbjct: 145 MIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIAL 204
Query: 124 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 183
+++ L L ++ IAA+ +EP+ G++G + P +L R I ++ LL+FDEV+
Sbjct: 205 ADELLKLIEL--HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVI 262
Query: 184 TGF-RLAYGGAQEYFGVTPD 202
TGF R + FGVTPD
Sbjct: 263 TGFGRTGSMFGADSFGVTPD 282
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 103/269 (38%), Gaps = 39/269 (14%)
Query: 38 LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-------- 87
LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 104 LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAF 163
Query: 88 --HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVSALENLFENNKGEI 141
H+ G+ L PD P G TL E L G I
Sbjct: 164 SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLT--------EKLAAVPAGSI 215
Query: 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF---G 198
A +EP+ + G I P FL I + +G L++ DEV G LA G F G
Sbjct: 216 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG--LARSGRLHCFEHEG 273
Query: 199 VTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG---IHTL 255
PD P+ A +I++ + + TL GNP++ AG + T+
Sbjct: 274 FVPDILVLGKGLGGGLPLSAVIAPAEILDCAS----AFAMQTLHGNPISAAAGLAVLETI 329
Query: 256 KRLKEPGTYEYLNKITGELTQGIIDAGKK 284
R P E ++ L G+ + K+
Sbjct: 330 DRDDLPAMAERKGRL---LRDGLSELAKR 355
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 103/269 (38%), Gaps = 39/269 (14%)
Query: 38 LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-------- 87
LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 91 LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAF 150
Query: 88 --HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVSALENLFENNKGEI 141
H+ G+ L PD P G TL E L G I
Sbjct: 151 SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLT--------EKLAAVPAGSI 202
Query: 142 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF---G 198
A +EP+ + G I P FL I + +G L++ DEV G LA G F G
Sbjct: 203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG--LARSGRLHCFEHEG 260
Query: 199 VTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG---IHTL 255
PD P+ A +I++ + + TL GNP++ AG + T+
Sbjct: 261 FVPDILVLGKGLGGGLPLSAVIAPAEILDCAS----AFAMQTLHGNPISAAAGLAVLETI 316
Query: 256 KRLKEPGTYEYLNKITGELTQGIIDAGKK 284
R P E ++ L G+ + K+
Sbjct: 317 DRDDLPAMAERKGRL---LRDGLSELAKR 342
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 93/249 (37%), Gaps = 38/249 (15%)
Query: 38 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHA----- 89
LAE + + ++ F NSG+EA ++AR + G KF Y G+
Sbjct: 96 LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXA 155
Query: 90 --------------DPFLVKAGSGVATLGLPDS---PGVPKGATYETLTAPFNDVSALEN 132
+PF SG + PD PG+ + Y+ D
Sbjct: 156 TXAATGQAQRRYQYEPF----ASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXTWE 211
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 191
L E IAA I EP++ G + D+ A+ +++GALLI DEV+ GF R
Sbjct: 212 LSET----IAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKA 267
Query: 192 GAQEYFGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVAPAGP---MYQAGTLSGNPLA 247
+ V PD P+ A +R+I E G T GNP A
Sbjct: 268 FGFXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAA 327
Query: 248 MTAGIHTLK 256
+ L+
Sbjct: 328 CALALKNLE 336
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 127 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 185
V+ LE L E + IAA I EP++G G + P + AI+ + ++ LL+ DEV+TG
Sbjct: 206 VAELEALIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTG 265
Query: 186 F-RLAYGGAQEYFGVTPDXXXXXXX--XXXXXPVGAYGGRRDIMEMVAPA----GPMYQA 238
F RL +++G+ PD P+ + +++ GP+
Sbjct: 266 FGRLGTXFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHG 325
Query: 239 GTLSGNPLAMTAGIHTLKRLKE 260
T S +P+ AG+ LK L E
Sbjct: 326 WTYSAHPIGAAAGVANLKLLDE 347
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 55 VNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGV-----ATL 103
V+ G+EA ++LAR + GR ++I YHG + L +G G L
Sbjct: 95 VSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPL 154
Query: 104 GLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNS-GFIAPKP 160
P++ P +PK D L L E E +AA + EPVVG S +AP P
Sbjct: 155 MRPEAWPKLPKPDPARNGA---EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAP 211
Query: 161 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPD 202
+ +R I E G + I DEVM+G R A + GVTPD
Sbjct: 212 GYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD 255
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 22/266 (8%)
Query: 31 PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEG 83
P ++E L+ ++ P+ + V + NSG+E+ ++R+ R + ++ +I
Sbjct: 94 PAVVE--LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWN 151
Query: 84 CYHGH----ADPFLVKAGSGVATLGLPDSPGVPKGATY----ETLTAPFNDVSAL---EN 132
YHG A +K L +P + + Y + F V+A E
Sbjct: 152 GYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEK 211
Query: 133 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 191
+ E ++AA + EP+ G G I P + I RI ++ LL+ DEV+ GF R
Sbjct: 212 ILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEW 271
Query: 192 GAQEYFGVTPDX-XXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 250
++FG PD P+GA + + E + G T SG+P+
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331
Query: 251 GIHTLKRLKEPGTYEYLNKITGELTQ 276
+ L++ G + + G Q
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQ 357
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 134 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 192
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 249
A + V PD G GRR ++ VA A P A T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLASTWGGNLTDMV 339
Query: 250 AGIHTLKRLKEPGTYE 265
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 134 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 192
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 249
A + V PD G GRR ++ VA A P T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSTWGGNLTDMV 339
Query: 250 AGIHTLKRLKEPGTYE 265
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 36/254 (14%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGHAD 90
LA+ +I P V F SG++A ++L + +++II YHG
Sbjct: 100 LAKXIIDRAPKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSG- 158
Query: 91 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGE------ 140
V GS ++ +P+ T AP+ D S E F + +
Sbjct: 159 ---VXTGSLTGLDLFHNAFDLPRAPVLHT-EAPYYFRRTDRSXSEEQFSQHCADKLEEXI 214
Query: 141 -------IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 192
IAA I EP++G G + P + I+ + K+ LL+ DEV+TGF RL
Sbjct: 215 LAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXF 274
Query: 193 AQEYFGVTPDXXXXXXX--XXXXXPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPL 246
+++G+ PD P+ + +++ G + T S +P+
Sbjct: 275 GSDHYGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPI 334
Query: 247 AMTAGIHTLKRLKE 260
+ AG+ L+ + E
Sbjct: 335 CVAAGVANLELIDE 348
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 134 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 192
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 249
A + V PD G GRR ++ VA A P T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSTWGGNLTDMV 339
Query: 250 AGIHTLKRLKEPGTYE 265
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 134 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 192
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 193 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 249
A + V PD G GRR ++ VA A P + GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSSWGGNLTDMV 339
Query: 250 AGIHTLKRLKEPGTYE 265
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRER----IIKFEGCYHGHA 89
LAE + + P + + F G+ A LR + + GR + I++++G YHG
Sbjct: 102 LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDG-YHGST 160
Query: 90 D------------PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFEN 136
P A ++ L P+ P+ A + A +D V E+ E+
Sbjct: 161 ALTAACTGRTGNWPNFDIAQDRISFLSSPN----PRHAGNRSQEAFLDDLVQEFEDRIES 216
Query: 137 -NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA--YGGA 193
IAA + EP++ + G I P + + I +++ L I DEV+TGF + +
Sbjct: 217 LGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFAS 276
Query: 194 QEYFGVTPD 202
++ FGV PD
Sbjct: 277 EKVFGVVPD 285
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 131 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 189
E + E + +AA I EPV G G I + I+RI + LLI DEV+ GF R
Sbjct: 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG 273
Query: 190 YGGAQEYFGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 248
+ G+ P P+G ++ ++ T SG+P+A
Sbjct: 274 NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAA 332
Query: 249 TAGIHTLKRLKEPGTYEYLNKI 270
+ L+ L+E +++ +
Sbjct: 333 AVALENLRILEEENILDHVRNV 354
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 76/190 (40%), Gaps = 32/190 (16%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGHAD 90
LAE +I P + V + +SG EA L++A + +++ I + YHG
Sbjct: 92 LAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGD-- 149
Query: 91 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----------------NDVSALENLF 134
V ++ L P +E+ AP + L L
Sbjct: 150 ---TIGAVSVGSIELFHHVYGP--LMFESYKAPIPYVYRSESGDPDECRDQXLRELAQLL 204
Query: 135 ENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 192
E + EIAA+ +E +V G SG I +L +R + L+I DEV TGF R
Sbjct: 205 EEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF 264
Query: 193 AQEYFGVTPD 202
A E+ V PD
Sbjct: 265 ACEHENVQPD 274
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 22/185 (11%)
Query: 38 LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGHAD 90
LAE +I P + V + +SG EA L++A + +++ I + YHG D
Sbjct: 92 LAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHG--D 149
Query: 91 PF-LVKAGS-----GVATLGLPDSPGVPKGATYETLTAPFND-----VSALENLFENNKG 139
V GS V + +S P Y + + ++ + L L E +
Sbjct: 150 TIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHE 209
Query: 140 EIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 197
EIAA+ +E +V G SG I +L +R + L+I DEV TGF R A E+
Sbjct: 210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHE 269
Query: 198 GVTPD 202
V PD
Sbjct: 270 NVQPD 274
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 22/126 (17%)
Query: 78 IIKFEGCYHGHADPFLVKAGS-GVATLGLP--DSPGVPKGATYETLTAPFND-------- 126
I+ F G +HG L S + + +P D P P + L P +
Sbjct: 182 ILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAP----FPRLKYPLEEFVKENQQE 237
Query: 127 ----VSALENL---FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 179
+ +E+L + K +A II+EP+ G DF +R I++++G +
Sbjct: 238 EARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 297
Query: 180 DEVMTG 185
DEV TG
Sbjct: 298 DEVQTG 303
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 90 DPFLVKAGSGVATLGLPDSPG--VPKGATYETLTAPFN---DVSALENLFE--------- 135
DP V +G + LP+S P+ T+ + F+ D S L ++
Sbjct: 526 DPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQE 585
Query: 136 ----NNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 189
+ A+I+EPV+ G G P F + + +IFDEV TGF RL
Sbjct: 586 HSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG 645
Query: 190 YGGAQEYFGVTPD 202
E G PD
Sbjct: 646 VETTTELLGCKPD 658
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 90 DPFLVKAGSGVATLGLPDSPG--VPKGATYETLTAPFN---DVSALENLFE--------- 135
DP V +G + LP+S P+ T+ + F+ D S L ++
Sbjct: 526 DPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQE 585
Query: 136 ----NNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 189
+ A+I+EPV+ G G P F + + +IFDEV TGF RL
Sbjct: 586 HSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG 645
Query: 190 YGGAQEYFGVTPD 202
E G PD
Sbjct: 646 VETTTELLGCKPD 658
>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3PD6|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 53 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 112
RFV T + G LR+ +F +R KF D FL K G T D+
Sbjct: 96 RFVTVQTISGTGALRVGASFL--QRFFKFS------RDVFLPKPSWGNHTPIFRDAGMQL 147
Query: 113 KGATY-ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171
+G Y + T F+ ALE++ + E + ++L N + P+P+ I + K
Sbjct: 148 QGYRYYDPKTCGFDFSGALEDI--SKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVK 205
Query: 172 ENGALLIFDEVMTGF 186
+ FD GF
Sbjct: 206 KKNLFAFFDMAYQGF 220
>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 53 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 112
RFV T + G LR+ +F +R KF D FL K G T D+
Sbjct: 96 RFVTVQTISGTGALRVGASFL--QRFFKFS------RDVFLPKPSWGNHTPIFRDAGMQL 147
Query: 113 KGATY-ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 171
+G Y + T F+ ALE++ + E + ++L N + P+P+ I + K
Sbjct: 148 QGYRYYDPKTCGFDFSGALEDI--SKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVK 205
Query: 172 ENGALLIFDEVMTGF 186
+ FD GF
Sbjct: 206 KKNLFAFFDMAYQGF 220
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 37 VLAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCYHGHA 89
+L+E ++ P V + NSG+EA + L A + +I+ YHG
Sbjct: 109 MLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVT 168
Query: 90 DPFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALENLFEN 136
G + GLP PG +G T E A LE +
Sbjct: 169 AVSASMTGKPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEETIQR 225
Query: 137 NKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186
+ IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 226 EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF 276
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186
IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 229 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGF 274
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 38 LAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCYHGHAD 90
L+E ++ P V + NSG+EA + L A + +I+ YHG
Sbjct: 116 LSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHGVTA 175
Query: 91 PFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALENLFENN 137
G + GLP PG +G T E A LE +
Sbjct: 176 VSASXTGKPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEETIQRE 232
Query: 138 KGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 186
+ IA EPV G G I P + AI I ++ +I DEV+ GF
Sbjct: 233 GADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF 282
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 141 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 199
IA EPV+G G I P + AI I ++ +I DEV+ GF R +
Sbjct: 237 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTYDF 296
Query: 200 TPD 202
TPD
Sbjct: 297 TPD 299
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPC---LLENVLAEMVISAVPSIEMVRFVNSGTEA 61
+I+ P+++ L ++ +G SFGA C L+E+VLAE E+ + TE
Sbjct: 276 LIVCPAWIPELNSVVHG-PEGISFGASCPLSLVESVLAE---------EIAKLPEQKTEV 325
Query: 62 CMGVLRLARAFTGRE 76
GV+ R F G++
Sbjct: 326 FRGVMEQLRWFAGKQ 340
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPC---LLENVLAEMVISAVPSIEMVRFVNSGTEA 61
+I+ P+++ L ++ +G SFGA C L+E+VLAE E+ + TE
Sbjct: 276 LIVCPAWIPELNSVVHG-PEGISFGASCPLSLVESVLAE---------EIAKLPEQKTEV 325
Query: 62 CMGVLRLARAFTGRE 76
GV+ R F G++
Sbjct: 326 FRGVMEQLRWFAGKQ 340
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+I+ P+++ L A+ E +G SFGA C L +V + ++ AV + TE G
Sbjct: 276 MIICPAWIPELNAV-EHGPEGISFGAACALSSV-EKTLLEAV-----AKLPTQKTEVFRG 328
Query: 65 VLRLARAFTGRE 76
VL R F G++
Sbjct: 329 VLEQLRWFAGKQ 340
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+I+ P+++ L A+ E +G SFGA C L +V + ++ AV + TE G
Sbjct: 277 MIICPAWIPELNAV-EHGPEGISFGAACALSSV-EKTLLEAV-----AKLPTQKTEVFRG 329
Query: 65 VLRLARAFTGRE 76
VL R F G++
Sbjct: 330 VLEQLRWFAGKQ 341
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+I+ P+++ L A+ E +G SFGA C L +V + ++ AV + TE G
Sbjct: 277 MIICPAWIPELNAV-EHGPEGISFGAACALSSV-EKTLLEAV-----AKLPTQKTEVFRG 329
Query: 65 VLRLARAFTGRE 76
VL R F G++
Sbjct: 330 VLEQLRWFAGKQ 341
>pdb|1FIQ|B Chain B, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 350
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+I+ P+++ L A+ E +G SFGA C L +V + ++ AV + TE G
Sbjct: 58 MIICPAWIPELNAV-EHGPEGISFGAACALSSV-EKTLLEAV-----AKLPTQKTEVFRG 110
Query: 65 VLRLARAFTGRE 76
VL R F G++
Sbjct: 111 VLEQLRWFAGKQ 122
>pdb|3B9J|B Chain B, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|J Chain J, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 350
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+I+ P+++ L A+ E +G SFGA C L +V + ++ AV + TE G
Sbjct: 58 MIICPAWIPELNAV-EHGPEGISFGAACALSSV-EKTLLEAV-----AKLPTQKTEVFRG 110
Query: 65 VLRLARAFTGRE 76
VL R F G++
Sbjct: 111 VLEQLRWFAGKQ 122
>pdb|3NVV|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 334
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+I+ P+++ L A+ E +G SFGA C L +V + ++ AV + TE G
Sbjct: 83 MIICPAWIPELNAV-EHGPEGISFGAACALSSV-EKTLLEAV-----AKLPTQKTEVFRG 135
Query: 65 VLRLARAFTGRE 76
VL R F G++
Sbjct: 136 VLEQLRWFAGKQ 147
>pdb|3ETR|B Chain B, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|M Chain M, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3EUB|B Chain B, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|K Chain K, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|T Chain T, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|3 Chain 3, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3NRZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|B Chain B, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|K Chain K, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 305
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 5 IILFPSYLQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 64
+I+ P+++ L A+ E +G SFGA C L +V + ++ AV + TE G
Sbjct: 54 MIICPAWIPELNAV-EHGPEGISFGAACALSSV-EKTLLEAV-----AKLPTQKTEVFRG 106
Query: 65 VLRLARAFTGRE 76
VL R F G++
Sbjct: 107 VLEQLRWFAGKQ 118
>pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate
Lactonizing Enzyme
Length = 370
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 158 PKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 196
P+ +F A+RR+T++NG ++ DE ++ A+ A+++
Sbjct: 224 PRANF-GALRRLTEQNGVAILADESLSSLSSAFELARDH 261
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 157 APKPDFLNAIRRITKENGALLIF-DEVMTGFRLAYGGAQEYFGVTP 201
PKPD + +R T G +L+F D+ ++G +L G ++ V P
Sbjct: 165 CPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPP 208
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 122
G Y G+ D G G AT G D P VP+G+T T A
Sbjct: 280 GQYVGNPD------GEGEATKGYLDDPTVPRGSTTATFAA 313
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 83 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 122
G Y G+ D G G AT G D P VP+G+T T A
Sbjct: 305 GQYVGNPD------GEGEATKGYLDDPTVPRGSTTATFAA 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,160,283
Number of Sequences: 62578
Number of extensions: 487499
Number of successful extensions: 1503
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 99
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)