Query 017634
Match_columns 368
No_of_seqs 153 out of 987
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 2.3E-37 5.1E-42 290.3 13.0 169 177-345 46-218 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.8 1.8E-21 4E-26 150.8 4.7 68 273-340 1-68 (68)
3 KOG1944 Peroxisomal membrane p 83.0 4.7 0.0001 38.3 7.5 51 119-169 46-97 (222)
4 PF04639 Baculo_E56: Baculovir 36.5 58 0.0013 32.7 4.8 86 59-146 216-301 (305)
5 COG2271 UhpC Sugar phosphate p 36.3 3.4E+02 0.0074 28.9 10.6 173 117-338 15-206 (448)
6 KOG2888 Putative RNA binding p 31.9 4.3 9.3E-05 41.4 -3.8 31 149-180 153-185 (453)
7 cd07215 Pat17_PNPLA8_PNPLA9_li 31.2 41 0.00088 33.4 2.9 52 144-195 1-56 (329)
8 COG4658 RnfD Predicted NADH:ub 29.2 6.1E+02 0.013 26.1 10.6 99 108-242 3-103 (338)
9 PF10929 DUF2811: Protein of u 26.6 97 0.0021 23.9 3.5 29 196-226 11-39 (57)
10 COG0534 NorM Na+-driven multid 23.3 7.9E+02 0.017 25.4 10.8 93 184-279 65-162 (455)
11 TIGR01946 rnfD electron transp 23.1 5.8E+02 0.013 26.0 9.4 86 117-238 6-93 (327)
12 PF07423 DUF1510: Protein of u 21.2 89 0.0019 30.0 3.0 27 117-143 4-30 (217)
13 COG1284 Uncharacterized conser 21.1 5.3E+02 0.011 25.7 8.5 57 179-237 110-185 (289)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=290.28 Aligned_cols=169 Identities=32% Similarity=0.668 Sum_probs=160.5
Q ss_pred HhhCChhHHHHHHHHHH-HHHHHHHHhHhCCC---CCCcchHHHHHHHHHHhhhhhHHHhHHHHHHhhhcCCCCccchhh
Q 017634 177 LKTNPVLAKMVISGVVY-SLGDWIAQCFQGKP---LFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPA 252 (368)
Q Consensus 177 L~r~PLlTkaiTSgvl~-~lGDliAQ~ie~k~---~~~~D~~Rt~rfal~G~~~~GPl~h~WY~~Ldr~fP~~~~~~vl~ 252 (368)
...+|+++++++++.+. .+||+++|.++.++ ...+|+.|++||+++|+++.||..|+||++|++++|.+...+++.
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~ 125 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK 125 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence 46789999999998888 99999999998766 578999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHhhHHHHhhccchhhHHHhhhhhcccCCchhhhhhHHHHHHHH
Q 017634 253 KVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVT 332 (368)
Q Consensus 253 KVlvDQlV~sPi~~~~Ff~~~~lLeG~s~~ei~~klk~~~~ptL~asw~~WPpaq~iNF~fVP~~~Rvlfvn~v~l~Wnt 332 (368)
|+++||++++|+++.+||.+|++++|++.+++.++++++|+|+++++|++||++|++||.|||+++|++|+|+++++|++
T Consensus 126 kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~ 205 (222)
T KOG1944|consen 126 KVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNT 205 (222)
T ss_pred HHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhh
Q 017634 333 ILSTYSNEKSEAR 345 (368)
Q Consensus 333 yLS~i~n~~~e~~ 345 (368)
|||+++++..+++
T Consensus 206 ~Ls~~~~~~~~~~ 218 (222)
T KOG1944|consen 206 YLSYKNASLVELA 218 (222)
T ss_pred HHHHHhhcccccc
Confidence 9999998774433
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.84 E-value=1.8e-21 Score=150.82 Aligned_cols=68 Identities=41% Similarity=0.778 Sum_probs=66.1
Q ss_pred HHHHcCCChhHHHHHHHHhhHHHHhhccchhhHHHhhhhhcccCCchhhhhhHHHHHHHHHHhhhccc
Q 017634 273 LGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNE 340 (368)
Q Consensus 273 ~~lLeG~s~~ei~~klk~~~~ptL~asw~~WPpaq~iNF~fVP~~~Rvlfvn~v~l~WntyLS~i~n~ 340 (368)
|++++|++++++.+++|++|+++++++|++|||+|++||.|||+++|++|+|+|+++|++|||+++|+
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=83.04 E-value=4.7 Score=38.33 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheeeeecccc-ccchhHHHHHHhhhHHH
Q 017634 119 EEMERLIDRTINATIVLAVGTFAITKLLTIDQDY-WHGWTIFEIVRYAPLHN 169 (368)
Q Consensus 119 ~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~-~~Gwt~~eil~~~p~~l 169 (368)
.+..+++.+.+++.++...++.++.+.+++++++ +++|.+..++|.++.+.
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~ 97 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGF 97 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhh
Confidence 4678899999999999989999999999999999 89999999999998874
No 4
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=36.45 E-value=58 Score=32.68 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=44.2
Q ss_pred ccccccccCCCcccccCCceeeeccCccccccccccccccCCcccccCCCCcchhhhhcchHHHHHHHHHHHHHHHHHHH
Q 017634 59 ELDVLPVQSQDLTDMQEGVVVGREEDGELASQVSQVSGFSDGTLSFDGFSSASADERRGNEEMERLIDRTINATIVLAVG 138 (368)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iv~~~~ 138 (368)
-+|.-.-|--|..|-.++---.-.|.-.++.-++-.|. ++.+.-+|+.+.|+.+.....++--=+=-.|-+.|+.+++
T Consensus 216 ~Adp~S~QYvDIS~L~~nqtI~CiEPYd~gDLIgDLGL--D~LLGe~Gl~~~SSnss~S~s~~l~piil~IG~vl~i~~I 293 (305)
T PF04639_consen 216 NADPDSPQYVDISDLAPNQTIQCIEPYDFGDLIGDLGL--DWLLGENGLITKSSNSSKSVSDSLLPIILIIGGVLLIVFI 293 (305)
T ss_pred CCCCCCcccccHHHcCCCCeEEEecCCcHHHHHHhccc--ccccCcccccccccCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 34544555555555555555455665555555555554 7777778887666644322222111111223334445555
Q ss_pred Hhhhheee
Q 017634 139 TFAITKLL 146 (368)
Q Consensus 139 ~~~~~~~~ 146 (368)
+|.|||.+
T Consensus 294 g~~ifK~~ 301 (305)
T PF04639_consen 294 GYFIFKRL 301 (305)
T ss_pred hheeeEee
Confidence 66666654
No 5
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=36.29 E-value=3.4e+02 Score=28.92 Aligned_cols=173 Identities=15% Similarity=0.095 Sum_probs=89.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHH--HHHHHHHH
Q 017634 117 GNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKM--VISGVVYS 194 (368)
Q Consensus 117 ~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTka--iTSgvl~~ 194 (368)
+.+|.++..+|.-.=.++..+++|+.| ++.+++.+.=...+.+.+-++|+ -.-+.++.
T Consensus 15 p~~~~~~~y~~~r~qif~~~fiGYa~f--------------------Yl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~ 74 (448)
T COG2271 15 PASEIDKTYKRWRIQIFLSIFIGYAAF--------------------YLTRKNFNLAMPALIEDGGLSKTQLGILGSAFS 74 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHH
Confidence 456778888888888888999999888 66777766666666666644433 23333333
Q ss_pred HHHHHHHhHhCCCCCCcchHHHHHHHHHHhhhhhHHHhHHHHHHhhhcCCCCccchhhHHHHhhhhhhhhHHHHHHHHHH
Q 017634 195 LGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLG 274 (368)
Q Consensus 195 lGDliAQ~ie~k~~~~~D~~Rt~rfal~G~~~~GPl~h~WY~~Ldr~fP~~~~~~vl~KVlvDQlV~sPi~~~~Ff~~~~ 274 (368)
++=-+++.+.+-= -|....-+|+.+|.+..|-. ...+.+.+ +-....++.++++
T Consensus 75 i~YG~sKf~~G~~---sDr~npr~fm~~gLilsai~-nil~Gfs~----------------------s~~~~~~l~~lng 128 (448)
T COG2271 75 ITYGVSKFVMGVL---SDRSNPRYFMAFGLILSAIV-NILFGFSP----------------------SLFLFAVLWVLNG 128 (448)
T ss_pred HHHHHHHHHhhhh---cccCCCceeehHHHHHHHHH-HHHHhhhh----------------------HHHHHHHHHHHHH
Confidence 3444444443311 13333334555555544322 12222222 1123455667788
Q ss_pred HHcCCChhHHHHHHHHhhHHHHh-------------hccchhhHH--HhhhhhcccCCch--hhhhhHHHHHHHHHHhhh
Q 017634 275 LLRLESPFSIFSELKATFWPMLT-------------AGWKLWPFA--HLVTYGLVPVEQR--LLWVDCVELIWVTILSTY 337 (368)
Q Consensus 275 lLeG~s~~ei~~klk~~~~ptL~-------------asw~~WPpa--q~iNF~fVP~~~R--vlfvn~v~l~WntyLS~i 337 (368)
++||..+.-.-+.+-+=|...=. -+-..+|.+ -.+++.+ .+| ..+-.+++++=..++-++
T Consensus 129 ~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~---~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 129 WFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG---GWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred HHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHH
Confidence 99987654333333222211111 122334444 3333333 444 344567777777766664
Q ss_pred c
Q 017634 338 S 338 (368)
Q Consensus 338 ~ 338 (368)
.
T Consensus 206 ~ 206 (448)
T COG2271 206 L 206 (448)
T ss_pred h
Confidence 4
No 6
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=31.94 E-value=4.3 Score=41.35 Aligned_cols=31 Identities=32% Similarity=0.603 Sum_probs=20.6
Q ss_pred ccccccchhHHHHHHh--hhHHHHHHHHHHHhhC
Q 017634 149 DQDYWHGWTIFEIVRY--APLHNWTAYEEALKTN 180 (368)
Q Consensus 149 d~~~~~Gwt~~eil~~--~p~~lw~~Y~~~L~r~ 180 (368)
|+.|.|+.-+-.| |+ .|.+||.||+-.|..-
T Consensus 153 dSpYIRalGFmYi-RYtqpp~dLw~WyEpyldDd 185 (453)
T KOG2888|consen 153 DSPYIRALGFMYI-RYTQPPADLWDWYEPYLDDD 185 (453)
T ss_pred CchhhhhheeeEE-eecCChhHHHHHhhhhccch
Confidence 7777777654333 22 3889999999866543
No 7
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=31.23 E-value=41 Score=33.40 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=38.1
Q ss_pred eeeeeccccccchhHHHHHHhhhHHHHHHH----HHHHhhCChhHHHHHHHHHHHH
Q 017634 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAY----EEALKTNPVLAKMVISGVVYSL 195 (368)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y----~~~L~r~PLlTkaiTSgvl~~l 195 (368)
+||.+|.|=.||-....||.++-.++-..+ .+..+.-.+++-+-|+|+++++
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~ 56 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCL 56 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHH
Confidence 589999999999999999988877653222 1234445678888888877654
No 8
>COG4658 RnfD Predicted NADH:ubiquinone oxidoreductase, subunit RnfD [Energy production and conversion]
Probab=29.19 E-value=6.1e+02 Score=26.08 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=69.6
Q ss_pred CCcchhhhhcchHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHHH
Q 017634 108 SSASADERRGNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMV 187 (368)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTkai 187 (368)
..++++-.......++++.--++|++-+.++..--| | .+ .+-+.+
T Consensus 3 ~~~ssPh~h~~~~t~~im~~vi~A~lPa~~~a~yff-----------G----------------~g--------~L~~~~ 47 (338)
T COG4658 3 KMASSPHTHNQRLTTRIMLLVILALLPALAAAVYFF-----------G----------------FG--------TLIQIA 47 (338)
T ss_pred cCCCCccccchhHHHHHHHHHHHHHhHHHHHHHHHh-----------h----------------HH--------HHHHHH
Confidence 344555556667777777777777776655544222 1 01 235678
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCc--chHHHHHHHHHHhhhhhHHHhHHHHHHhhhc
Q 017634 188 ISGVVYSLGDWIAQCFQGKPLFEF--DRTRMFRSGLVGFTLHGSLSHYYYQFCEELF 242 (368)
Q Consensus 188 TSgvl~~lGDliAQ~ie~k~~~~~--D~~Rt~rfal~G~~~~GPl~h~WY~~Ldr~f 242 (368)
.+.+...+.+.+.|.+.+|+...+ |..-.+--.+.|..+ =|..-+|+-++-.+|
T Consensus 48 la~~~a~~~E~~~~~lrk~~~~~~l~D~salltgLLla~~i-Pp~~P~w~~~ig~~f 103 (338)
T COG4658 48 LAILVALLLEALVLKLRKKSVTAFLPDGSALLTGLLLAVVI-PPLAPWWMTVIGTFF 103 (338)
T ss_pred HHHHHHHHHHHHHHHHhccCcccccCCccHHHHHHHHHhhC-CccchHHHHHHHHHH
Confidence 888999999999999998776666 888777777888774 788888887776654
No 9
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=26.60 E-value=97 Score=23.88 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=22.7
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHHHhhh
Q 017634 196 GDWIAQCFQGKPLFEFDRTRMFRSGLVGFTL 226 (368)
Q Consensus 196 GDliAQ~ie~k~~~~~D~~Rt~rfal~G~~~ 226 (368)
=+.+.+.++..| .+|..|++..++.||++
T Consensus 11 ~~~m~~fie~hP--~WDQ~Rl~~aALa~FL~ 39 (57)
T PF10929_consen 11 HQAMKDFIETHP--NWDQYRLFQAALAGFLL 39 (57)
T ss_pred HHHHHHHHHcCC--CchHHHHHHHHHHHHHH
Confidence 355666677665 79999999999999886
No 10
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=23.26 E-value=7.9e+02 Score=25.44 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCCCCCcchHHHHHHHHHHhhhhh-HHHhHHHHHHhhhc---CC-CCccchhhHHHHhh
Q 017634 184 AKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHG-SLSHYYYQFCEELF---PF-QDWWVVPAKVAFDQ 258 (368)
Q Consensus 184 TkaiTSgvl~~lGDliAQ~ie~k~~~~~D~~Rt~rfal~G~~~~G-Pl~h~WY~~Ldr~f---P~-~~~~~vl~KVlvDQ 258 (368)
.-++..|+..+.+=++||.+-.++ .-+.+|+++.+++-.++.| ++.-..+-+.+.++ .. ...... .+--+-=
T Consensus 65 ~~~~~~gl~~g~~~liaq~~Ga~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~-a~~Yl~i 141 (455)
T COG0534 65 IIAIFIGLGTGTTVLVAQAIGAGD--RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLEL-AAEYLRI 141 (455)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHH-HHHHHHH
Confidence 456778888899999999986442 3567788888877666566 55555554444443 22 111111 1111122
Q ss_pred hhhhhhHHHHHHHHHHHHcCC
Q 017634 259 TAWAAAWNSIYYMVLGLLRLE 279 (368)
Q Consensus 259 lV~sPi~~~~Ff~~~~lLeG~ 279 (368)
..++-.....+++..+++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~lr~~ 162 (455)
T COG0534 142 ILLGAPFALLSFVLSGILRGL 162 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 233334455666777788764
No 11
>TIGR01946 rnfD electron transport complex, RnfABCDGE type, D subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=23.12 E-value=5.8e+02 Score=25.98 Aligned_cols=86 Identities=9% Similarity=0.212 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Q 017634 117 GNEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLG 196 (368)
Q Consensus 117 ~~~~~~~~~~~~~n~~iv~~~~~~~~~~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~PLlTkaiTSgvl~~lG 196 (368)
++.+.++++...+.|++-..+.+.-.| || +.+..++.+.+.+.+.
T Consensus 6 ~~~~~~~iM~~VllALlP~~~~~i~~f-----------G~------------------------~al~~~~~~v~~av~~ 50 (327)
T TIGR01946 6 SGDSTRKIMRDVLIALLPGLAAQVYFF-----------GW------------------------GTLIQIALAILTALIL 50 (327)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-----------hH------------------------HHHHHHHHHHHHHHHH
Confidence 456778888888888877766665433 22 2233778888999999
Q ss_pred HHHHHhHhCCCCCCc--chHHHHHHHHHHhhhhhHHHhHHHHHH
Q 017634 197 DWIAQCFQGKPLFEF--DRTRMFRSGLVGFTLHGSLSHYYYQFC 238 (368)
Q Consensus 197 DliAQ~ie~k~~~~~--D~~Rt~rfal~G~~~~GPl~h~WY~~L 238 (368)
|.+.|++.+|+.... |..-..--.++++.+ =|..-+|.-.+
T Consensus 51 E~l~~~l~~k~~~~~~~D~Sa~vTglLlal~l-P~~~P~W~~~i 93 (327)
T TIGR01946 51 EAAILKLRKRSIKAFLKDGSAILTGLLLAVAI-PPLAPWWMIVI 93 (327)
T ss_pred HHHHHHHhCCCCccccCCccHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 999999998764433 777776667777664 44444554443
No 12
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.16 E-value=89 Score=29.98 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhh
Q 017634 117 GNEEMERLIDRTINATIVLAVGTFAIT 143 (368)
Q Consensus 117 ~~~~~~~~~~~~~n~~iv~~~~~~~~~ 143 (368)
...++++..+++||.+|..++++.+|.
T Consensus 4 ~~r~KrRK~N~iLNiaI~IV~lLIiiv 30 (217)
T PF07423_consen 4 QQRQKRRKTNKILNIAIGIVSLLIIIV 30 (217)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 346788999999999998888776654
No 13
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=21.12 E-value=5.3e+02 Score=25.68 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=35.9
Q ss_pred hCChhHHHHHHHHHHHHH--------------HHHHHhHhCCCCCCcchHHHHH-----HHHHHhhhhhHHHhHHHHH
Q 017634 179 TNPVLAKMVISGVVYSLG--------------DWIAQCFQGKPLFEFDRTRMFR-----SGLVGFTLHGSLSHYYYQF 237 (368)
Q Consensus 179 r~PLlTkaiTSgvl~~lG--------------DliAQ~ie~k~~~~~D~~Rt~r-----fal~G~~~~GPl~h~WY~~ 237 (368)
.++.+-.++.+|++.++| |++||.+++|. .++..++.- ..+.++++.+++-+..|.+
T Consensus 110 ~~~~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~--g~~iG~~ll~vd~~i~~~a~~~~~~~~~~lytl 185 (289)
T COG1284 110 IIDPLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKF--GISVGKILLLVDGFILLIAALVFGPLPNALYTL 185 (289)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHc--CCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 477888899999998876 99999998764 345444321 1223333334555555533
Done!