Query 017634
Match_columns 368
No_of_seqs 153 out of 987
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrd_A LH-1, light-harvesting 13.0 2.5E+02 0.0085 20.3 4.1 31 210-240 7-43 (52)
2 4aw6_A CAAX prenyl protease 1 8.5 5.6E+02 0.019 25.8 6.5 51 220-270 131-187 (482)
3 1p58_D Envelope protein M; fla 6.3 5.1E+02 0.018 19.7 3.8 33 171-204 30-62 (75)
4 1rh5_B Preprotein translocase 5.5 5.8E+02 0.02 19.4 3.7 29 115-143 28-56 (74)
5 3mp7_B Preprotein translocase 5.4 6.4E+02 0.022 18.4 3.7 29 115-143 24-52 (61)
6 2itb_A TRNA-(MS(2)IO(6)A)-hydr 4.4 4E+02 0.014 24.2 2.4 20 118-137 106-125 (206)
7 3m92_A Protein YCIN; DUF2498, 4.3 1.5E+02 0.0051 24.2 -0.5 32 51-82 38-69 (107)
8 2kco_A 30S ribosomal protein S 4.2 2.2E+02 0.0074 24.3 0.4 49 32-88 83-132 (133)
9 2vqc_A Hypothetical 13.2 kDa p 4.1 2E+02 0.0068 23.3 0.1 27 194-221 31-57 (118)
10 3am6_A Rhodopsin-2, AR2; seven 3.9 7.3E+02 0.025 22.2 3.8 17 187-203 197-213 (229)
No 1
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=13.04 E-value=2.5e+02 Score=20.27 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=21.1
Q ss_pred CcchHHHHHHHHHHhhhhhHHHhHH------HHHHhh
Q 017634 210 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 240 (368)
Q Consensus 210 ~~D~~Rt~rfal~G~~~~GPl~h~W------Y~~Ldr 240 (368)
-+|++|++.......+..+-+-|+- |++||.
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~~ 43 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccC
Confidence 4899998776655555566666664 566763
No 2
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=8.48 E-value=5.6e+02 Score=25.82 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=30.5
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhcCCCC------ccchhhHHHHhhhhhhhhHHHHHH
Q 017634 220 GLVGFTLHGSLSHYYYQFCEELFPFQD------WWVVPAKVAFDQTAWAAAWNSIYY 270 (368)
Q Consensus 220 al~G~~~~GPl~h~WY~~Ldr~fP~~~------~~~vl~KVlvDQlV~sPi~~~~Ff 270 (368)
.+++.+..=|+..|==-.+|..++.+. +...++..++.+++..|+...+++
T Consensus 131 ~l~~~l~~LP~~~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ 187 (482)
T 4aw6_A 131 TLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLY 187 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554322234788876542 245677888888888887654443
No 3
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=6.26 E-value=5.1e+02 Score=19.72 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHhHh
Q 017634 171 TAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQ 204 (368)
Q Consensus 171 ~~Y~~~L~r~PLlTkaiTSgvl~~lGDliAQ~ie 204 (368)
.+-++..-|||..+-++. .+.+.+|+...|++-
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi 62 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRVL 62 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHHH
Confidence 455677889999999988 888999999888753
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=5.51 E-value=5.8e+02 Score=19.35 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=23.9
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhh
Q 017634 115 RRGNEEMERLIDRTINATIVLAVGTFAIT 143 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~n~~iv~~~~~~~~~ 143 (368)
.-+.+|..+...-..-..++.++++|+|+
T Consensus 28 KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 28 KPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888899999999888
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.41 E-value=6.4e+02 Score=18.37 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=24.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhh
Q 017634 115 RRGNEEMERLIDRTINATIVLAVGTFAIT 143 (368)
Q Consensus 115 ~~~~~~~~~~~~~~~n~~iv~~~~~~~~~ 143 (368)
+.+.+|-.+..+...-..++.++++|+|+
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888899999999887
No 6
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=4.42 E-value=4e+02 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 017634 118 NEEMERLIDRTINATIVLAV 137 (368)
Q Consensus 118 ~~~~~~~~~~~~n~~iv~~~ 137 (368)
..+.++++|+|+.+.+|++=
T Consensus 106 ~~ep~~l~D~Llv~AlIEAR 125 (206)
T 2itb_A 106 AHEPVKLVDTLVVGAFIEAR 125 (206)
T ss_dssp SSTTHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 56679999999999999973
No 7
>3m92_A Protein YCIN; DUF2498, structural genomics, PSI-2, protein structure initi midwest center for structural genomics, MCSG, unknown funct; HET: MSE; 2.05A {Shigella flexneri 2A}
Probab=4.28 E-value=1.5e+02 Score=24.24 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=27.3
Q ss_pred eeehhcccccccccccCCCcccccCCceeeec
Q 017634 51 VVNSVVNEELDVLPVQSQDLTDMQEGVVVGRE 82 (368)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (368)
..|.+++|--|.+.+--+++.+|.+||++-+-
T Consensus 38 ~AN~iI~eHeDyi~GM~A~~Veqk~~VLVFkG 69 (107)
T 3m92_A 38 EANKIIREHEDTLAGIEATGVTQRNGVLVFTG 69 (107)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSSCEEEEE
T ss_pred HHHHHHHHhHHHhccccccceeeeCCEEEEec
Confidence 35678889999999999999999999998543
No 8
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=4.15 E-value=2.2e+02 Score=24.29 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred cCCCCcccccccccccccceeehhcccccccccccCCCcccccCCceee-eccCcccc
Q 017634 32 KLSQNPNFSRNKQRKLNSWVVNSVVNEELDVLPVQSQDLTDMQEGVVVG-REEDGELA 88 (368)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (368)
.+|+|+-|.|.+-. +-++++.-|+..+-+-|. .-|+|.+-. -.|+.||+
T Consensus 83 ~Npsn~~yvR~n~i-----tKGaII~~~lG~A~VtSR---PGQdG~vnavlleg~el~ 132 (133)
T 2kco_A 83 ETPANKELARRGII-----IRGAKIRTEAGLAVVTSR---PGQDGVINAVLLKNESQR 132 (133)
T ss_dssp SCCTTHHHHTTTCC-----CTTCEEEESSSEEEEEEE---ECTTSBEEEEECSSCCCC
T ss_pred ECCCChhheecccE-----eeeeEEEEeCceEEEecC---CCCcceEEEEEEeccccc
Confidence 46788888886544 556667666655444332 235665544 34555554
No 9
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=4.10 E-value=2e+02 Score=23.27 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=18.1
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 017634 194 SLGDWIAQCFQGKPLFEFDRTRMFRSGL 221 (368)
Q Consensus 194 ~lGDliAQ~ie~k~~~~~D~~Rt~rfal 221 (368)
.+-|++||.--..+ ..|+..|++++.+
T Consensus 31 sledilaqfeis~~-sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVP-SAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc-hHhHHHHHHHHHH
Confidence 46799999832222 3578888888764
No 10
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=3.93 E-value=7.3e+02 Score=22.17 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhH
Q 017634 187 VISGVVYSLGDWIAQCF 203 (368)
Q Consensus 187 iTSgvl~~lGDliAQ~i 203 (368)
-...+.+++.|++++..
T Consensus 197 ~~e~i~y~ilDv~~K~~ 213 (229)
T 3am6_A 197 DNEAILMGILDVLAKPL 213 (229)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34467788888887763
Done!