Query 017634
Match_columns 368
No_of_seqs 153 out of 987
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 17:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017634.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017634hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 17.1 79 0.0058 21.1 4.1 31 210-240 7-43 (52)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 8.3 1.6E+02 0.012 22.2 4.1 32 145-180 121-152 (174)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 8.3 53 0.0039 18.9 0.7 16 298-313 6-21 (26)
4 d2vqca1 a.4.5.78 (A:4-73) F-11 6.4 53 0.0039 22.7 0.1 27 194-221 22-48 (70)
5 d1e58a_ c.60.1.1 (A:) Phosphog 5.3 1.3E+02 0.0094 24.7 2.0 37 144-180 85-121 (247)
6 d2itba1 a.25.1.7 (A:3-201) Put 5.2 1.5E+02 0.011 24.6 2.4 20 118-137 103-122 (199)
7 d1q9ja1 c.43.1.2 (A:1-175) Pol 4.9 3E+02 0.022 20.3 4.0 32 144-179 118-149 (175)
8 d1oxwa_ c.19.1.3 (A:) Patatin 4.6 1.2E+02 0.0088 25.7 1.3 28 143-170 5-32 (360)
9 d1h2sa_ f.13.1.1 (A:) Sensory 4.5 5.1E+02 0.037 20.8 5.5 50 287-336 158-210 (225)
10 d2cvza1 a.100.1.1 (A:158-289) 4.5 4.9E+02 0.036 18.7 4.9 60 182-245 9-69 (132)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=17.11 E-value=79 Score=21.15 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHHHhhhhhHHHhHH------HHHHhh
Q 017634 210 EFDRTRMFRSGLVGFTLHGSLSHYY------YQFCEE 240 (368)
Q Consensus 210 ~~D~~Rt~rfal~G~~~~GPl~h~W------Y~~Ldr 240 (368)
-+|+||++.......+..+-+-|+- |++||.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCccccccC
Confidence 5899998877666666556666664 666663
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=8.33 E-value=1.6e+02 Score=22.18 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=25.1
Q ss_pred eeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhC
Q 017634 145 LLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTN 180 (368)
Q Consensus 145 ~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~ 180 (368)
+++++|-+..||++..+++ ++...|+..+...
T Consensus 121 ~~~~hHii~Dg~S~~~l~~----el~~~Y~~~~~g~ 152 (174)
T d1l5aa1 121 YTRAHHIVLDGYGMMLFEQ----RLSQHYQSLLSGQ 152 (174)
T ss_dssp EEEEETTTCCHHHHHHHHH----HHHHHHHHHHHTC
T ss_pred eeecccEEEcHhHHHHHHH----HHHHHHHHHhCCC
Confidence 4799999999999988874 4667787766544
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.26 E-value=53 Score=18.88 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=11.8
Q ss_pred hccchhhHHHhhhhhc
Q 017634 298 AGWKLWPFAHLVTYGL 313 (368)
Q Consensus 298 asw~~WPpaq~iNF~f 313 (368)
+-|.||.++-.+.|++
T Consensus 6 aiw~fw~ffalli~yl 21 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYYL 21 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888888777753
No 4
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=6.39 E-value=53 Score=22.69 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=18.2
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHH
Q 017634 194 SLGDWIAQCFQGKPLFEFDRTRMFRSGL 221 (368)
Q Consensus 194 ~lGDliAQ~ie~k~~~~~D~~Rt~rfal 221 (368)
.+-|++||.--..+ ..++..|++++.+
T Consensus 22 ~ledilaqfeis~~-~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP-SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc-hHhHHHHHHHHHH
Confidence 36799999832222 3578888888764
No 5
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli [TaxId: 562]}
Probab=5.26 E-value=1.3e+02 Score=24.65 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=27.3
Q ss_pred eeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhhC
Q 017634 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTN 180 (368)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r~ 180 (368)
.+-.+|.|.|.|-+..||....+.....+........
T Consensus 85 ~L~E~~~G~~eG~~~~ei~~~~~~e~~~~~~~~~~~~ 121 (247)
T d1e58a_ 85 KLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVT 121 (247)
T ss_dssp GGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCC
T ss_pred chhhccccccCCCcHHHHHHHhHHHHHHHHhccccCC
Confidence 3678999999999999999988876555444433333
No 6
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=5.16 E-value=1.5e+02 Score=24.60 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 017634 118 NEEMERLIDRTINATIVLAV 137 (368)
Q Consensus 118 ~~~~~~~~~~~~n~~iv~~~ 137 (368)
..+.++++|+||.+++|++=
T Consensus 103 ~~~~~~llD~Llv~AlIEAR 122 (199)
T d2itba1 103 AHEPVKLVDTLVVGAFIEAR 122 (199)
T ss_dssp SSTTHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhhh
Confidence 35667899999999999973
No 7
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.91 E-value=3e+02 Score=20.34 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=25.0
Q ss_pred eeeeeccccccchhHHHHHHhhhHHHHHHHHHHHhh
Q 017634 144 KLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKT 179 (368)
Q Consensus 144 ~~~~id~~~~~Gwt~~eil~~~p~~lw~~Y~~~L~r 179 (368)
=+++++|-+..||++.-++ .++...|.+.+..
T Consensus 118 l~l~~HH~i~Dg~S~~~ll----~el~~~Y~~~~~~ 149 (175)
T d1q9ja1 118 LTLYLHHCMADGHHGAVLV----DELFSRYTDAVTT 149 (175)
T ss_dssp EEEEEEGGGCCHHHHHHHH----HHHHHHHHHHHHS
T ss_pred EEEEccccccCHhHHHHHH----HHHHHHHHHHHhC
Confidence 3588999999999998777 5666788776653
No 8
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}
Probab=4.58 E-value=1.2e+02 Score=25.67 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.8
Q ss_pred heeeeeccccccchhHHHHHHhhhHHHH
Q 017634 143 TKLLTIDQDYWHGWTIFEIVRYAPLHNW 170 (368)
Q Consensus 143 ~~~~~id~~~~~Gwt~~eil~~~p~~lw 170 (368)
..||.+|.|=.||+....+|+++...+.
T Consensus 5 v~iLsldGGG~rG~~~~~vL~~L~~~~~ 32 (360)
T d1oxwa_ 5 VTVLSIDGGGIRGIIPATILEFLEGQLQ 32 (360)
T ss_dssp EEEEEECCCGGGGHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999988866543
No 9
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=4.53 E-value=5.1e+02 Score=20.81 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHhhHHHHhhccchhhHHHhhh---hhcccCCchhhhhhHHHHHHHHHHhh
Q 017634 287 ELKATFWPMLTAGWKLWPFAHLVT---YGLVPVEQRLLWVDCVELIWVTILST 336 (368)
Q Consensus 287 klk~~~~ptL~asw~~WPpaq~iN---F~fVP~~~Rvlfvn~v~l~WntyLS~ 336 (368)
++-+........+|.+.|.+-++. +..+-+..+..+.+...++-.+....
T Consensus 158 ~~~~~l~~~~~v~W~iYPi~y~l~~~g~~~~~~~~~~~~y~i~D~i~K~~FG~ 210 (225)
T d1h2sa_ 158 SLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGF 210 (225)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHSTTTTCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 333445566688999999988874 34555566666666666655444443
No 10
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=4.48 E-value=4.9e+02 Score=18.67 Aligned_cols=60 Identities=7% Similarity=0.067 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhCCCCCCcchHHHHHHHHHHhhhhhHHHhHHHH-HHhhhcCCC
Q 017634 182 VLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQ-FCEELFPFQ 245 (368)
Q Consensus 182 LlTkaiTSgvl~~lGDliAQ~ie~k~~~~~D~~Rt~rfal~G~~~~GPl~h~WY~-~Ldr~fP~~ 245 (368)
++.|++.++.+.+++..++-.-. ..+|....+....-|..-..++.+..-. .+++-++..
T Consensus 9 l~nN~l~~~~~~~~aEal~la~~----~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~ 69 (132)
T d2cvza1 9 AINNALLAVNLWAAGEGLLALVK----QGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKT 69 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhh
Confidence 44566666666666666654443 4689999988877776655555544432 445555443
Done!