BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017636
         (368 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AKL|A Chain A, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
           Nucleocapsid Protein
 pdb|4AKL|B Chain B, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
           Nucleocapsid Protein
          Length = 482

 Score = 32.3 bits (72), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 125 LRVSVPPQSGDLPLQTLYDINGDTYAW----GFRAKTNIVTVTFHNPGVQEDPACGPLID 180
           L+V VP       ++ L++       W    GFR   N  T    N  + E    G ++ 
Sbjct: 113 LKVEVPK------IEQLFNYQQAALKWRKDIGFRVNAN--TAALSNKVLAEYKVPGEIV- 163

Query: 181 AVAIKELYPPMPTRDNLVKNPGFEEGPH 208
            +++KE+   M  R NL+ N G +E P 
Sbjct: 164 -MSVKEMLSDMIRRRNLILNRGGDENPR 190


>pdb|4AQF|C Chain C, X-Ray Crystallographic Structure Of Crimean-Congo
           Haemorrhagic Fever Virus Nucleoprotein
 pdb|4AQG|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
           Haemorrhagic Fever Virus Nucleoprotein
          Length = 483

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 152 GFRAKTNIVTVTFHNPGVQEDPACGPLIDAVAIKELYPPMPTRDNLVKNPGFEEGPH 208
           GFR   N  T    N  + E    G ++  +++KE+   M  R NL+ N G +E P 
Sbjct: 139 GFRVNAN--TAALSNKVLAEYKVPGEIV--MSVKEMLSDMIRRRNLILNRGGDENPR 191


>pdb|4AQF|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
           Haemorrhagic Fever Virus Nucleoprotein
 pdb|4AQF|B Chain B, X-Ray Crystallographic Structure Of Crimean-Congo
           Haemorrhagic Fever Virus Nucleoprotein
          Length = 483

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 152 GFRAKTNIVTVTFHNPGVQEDPACGPLIDAVAIKELYPPMPTRDNLVKNPGFEEGPH 208
           GFR   N  T    N  + E    G ++  +++KE+   M  R NL+ N G +E P 
Sbjct: 139 GFRVNAN--TAALSNKVLAEYKVPGEIV--MSVKEMLSDMIRRRNLILNRGGDENPR 191


>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
           Enzyme E2 From Toxoplasma Gondii
          Length = 166

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 263 GRESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFESKGKGGFKS 322
           GRE+   Q      NKE N   +     N   G +  + F  + T+  P +S   GG   
Sbjct: 13  GRENLYFQGALKRINKELN-DLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFF 71

Query: 323 ASLKFKAIA--ARTRITFFSTYYHTKINDFGSLCGPVLDE 360
            ++ F +       ++ F +  YH  IN  G++C  +L +
Sbjct: 72  LNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKD 111


>pdb|1UI6|A Chain A, Crystal Structure Of Gamma-Butyrolactone Receptor
           (Arpa-Like Protein)
 pdb|1UI6|B Chain B, Crystal Structure Of Gamma-Butyrolactone Receptor
           (Arpa-Like Protein)
          Length = 215

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 107 ALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQ 139
           AL  LTFG +R C Q  VLR  +   +  +P++
Sbjct: 85  ALMRLTFGMARLCVQGPVLRAGLRLATAGVPVR 117


>pdb|1UI5|A Chain A, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa
           Like Protein)
 pdb|1UI5|B Chain B, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa
           Like Protein)
          Length = 215

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 107 ALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQ 139
           AL  LTFG +R C Q  VLR  +   +  +P++
Sbjct: 85  ALXRLTFGXARLCVQGPVLRAGLRLATAGVPVR 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,482,176
Number of Sequences: 62578
Number of extensions: 495994
Number of successful extensions: 970
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 6
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)