BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017636
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7Z407|CSMD3_HUMAN CUB and sushi domain-containing protein 3 OS=Homo sapiens GN=CSMD3
            PE=2 SV=3
          Length = 3707

 Score = 34.7 bits (78), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 38/259 (14%)

Query: 101  ITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDINGDTYAWGFRAKTNIV 160
            I V PG + +L F A  T A  ++LRV   P   D+ L+   +I+G     G  +  NIV
Sbjct: 1445 IEVDPGNIVSLQFLAFDTEASHDILRVWDGPPENDMLLK---EISGSLIPEGIHSTLNIV 1501

Query: 161  TVTFHNP-GVQEDPACGPLIDAVAIKELYPPMP---TR--------DNLV--KNPGFE-E 205
            T+ F     + +         +VA     P +P   TR        D +V   +PG+E +
Sbjct: 1502 TIQFDTDFYISKSGFAIQFSSSVATACRDPGVPMNGTRNGDGREPGDTVVFQCDPGYELQ 1561

Query: 206  GPHRL--VNTTNGVLLPPRQEDLTSPLPGWIIESLKAVKFIDAKHFNVPYGHA-----AV 258
            G  R+  +   N     P      +P  G +  S     FI + +F  PY H+      +
Sbjct: 1562 GEERITCIQVENRYFWQPSPPVCIAPCGGNLTGS---SGFILSPNFPHPYPHSRDCDWTI 1618

Query: 259  ELVAGRESAIAQILRTV-PNKEYNLTFTIGDAKNGCHGSM-------RVEAFAGKDTVAV 310
             + A    ++A I  ++ PN ++   +   D+ +   GS        R+E  +  +T+ +
Sbjct: 1619 TVNADYVISLAFISFSIEPNYDFLYIYDGPDSNSPLIGSFQDSKLPERIE--SSSNTMHL 1676

Query: 311  PFESKGKGGFKSASLKFKA 329
             F S G   +    L++KA
Sbjct: 1677 AFRSDGSVSYTGFHLEYKA 1695


>sp|P33545|DSC2_BOVIN Desmocollin-2 (Fragment) OS=Bos taurus GN=DSC2 PE=2 SV=1
          Length = 863

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 144 INGDTYAWGFRAKTNIVTVTFHNPGVQEDPACGPLIDAVAIKELYP 189
           +N   Y    R+ TN+ TVT +     E P C P +  V IKE  P
Sbjct: 392 VNEAPYTGTSRSTTNMATVTVNVQNQDEGPECDPRVQTVRIKENVP 437


>sp|Q80T79|CSMD3_MOUSE CUB and sushi domain-containing protein 3 OS=Mus musculus GN=Csmd3
            PE=2 SV=3
          Length = 3707

 Score = 31.6 bits (70), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 101  ITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDINGDTYAWGFRAKTNIV 160
            I V PG + +L F A  T A  ++LRV   P   ++ L+   +++G     G  +  NIV
Sbjct: 1445 IEVDPGNIVSLQFLAFDTEASHDILRVWDGPPENEMLLK---EVSGSLIPDGIHSTLNIV 1501

Query: 161  TVTF 164
            T+ F
Sbjct: 1502 TIQF 1505


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,965,031
Number of Sequences: 539616
Number of extensions: 6520993
Number of successful extensions: 12168
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12162
Number of HSP's gapped (non-prelim): 8
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)