Query 017636
Match_columns 368
No_of_seqs 182 out of 248
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 10:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 3E-128 6E-133 957.7 41.3 357 11-367 9-366 (373)
2 PF04862 DUF642: Protein of un 100.0 1.6E-46 3.4E-51 335.3 19.2 156 30-185 1-159 (159)
3 PLN03089 hypothetical protein; 100.0 1.2E-41 2.6E-46 338.7 17.5 157 190-366 22-186 (373)
4 PF04862 DUF642: Protein of un 100.0 2.7E-39 5.9E-44 288.8 18.2 148 196-363 1-158 (159)
5 PF02018 CBM_4_9: Carbohydrate 98.9 3E-08 6.6E-13 82.0 14.2 115 195-339 1-123 (131)
6 PF02018 CBM_4_9: Carbohydrate 98.4 1.9E-05 4.1E-10 65.2 15.4 112 29-166 1-126 (131)
7 cd06263 MAM Meprin, A5 protein 91.5 5.8 0.00013 34.2 12.7 80 279-365 72-154 (157)
8 PF15425 DUF4627: Domain of un 76.7 32 0.00068 32.6 10.4 84 194-292 5-101 (212)
9 PF15425 DUF4627: Domain of un 72.6 43 0.00094 31.7 10.2 76 28-116 5-96 (212)
10 PF00629 MAM: MAM domain; Int 72.4 53 0.0011 27.4 10.1 88 269-365 65-155 (160)
11 PF14900 DUF4493: Domain of un 71.3 16 0.00034 34.5 7.3 76 58-133 127-222 (235)
12 smart00137 MAM Domain in mepri 65.4 96 0.0021 27.3 12.8 80 279-365 76-158 (161)
13 cd08895 SRPBCC_CalC_Aha1-like_ 52.6 1.5E+02 0.0032 25.3 9.7 73 270-342 39-119 (146)
14 PF08308 PEGA: PEGA domain; I 51.9 73 0.0016 24.1 6.6 37 251-287 32-68 (71)
15 cd06263 MAM Meprin, A5 protein 51.4 1E+02 0.0022 26.4 8.3 79 107-186 71-154 (157)
16 PF14344 DUF4397: Domain of un 51.2 28 0.0006 29.1 4.5 38 77-114 35-80 (122)
17 PF03422 CBM_6: Carbohydrate b 49.2 1.5E+02 0.0032 24.4 12.6 101 254-364 21-124 (125)
18 PF08308 PEGA: PEGA domain; I 48.2 55 0.0012 24.7 5.4 36 81-116 31-68 (71)
19 cd08901 SRPBCC_CalC_Aha1-like_ 44.4 1.9E+02 0.0042 24.3 8.9 63 274-342 37-100 (136)
20 TIGR02148 Fibro_Slime fibro-sl 41.6 67 0.0014 27.0 5.2 44 77-120 28-78 (90)
21 PF00629 MAM: MAM domain; Int 41.4 1.2E+02 0.0026 25.3 6.9 80 106-186 71-155 (160)
22 PF08327 AHSA1: Activator of H 38.5 2E+02 0.0044 22.9 7.9 67 273-342 29-97 (124)
23 PF08194 DIM: DIM protein; In 35.6 35 0.00077 24.1 2.3 10 27-36 22-31 (36)
24 PF08400 phage_tail_N: Prophag 33.5 1.1E+02 0.0023 27.5 5.5 73 216-308 7-86 (134)
25 PF05547 Peptidase_M6: Immune 32.6 3.9E+02 0.0084 29.8 10.7 107 253-364 339-459 (645)
26 PRK00022 lolB outer membrane l 30.9 1.8E+02 0.0038 26.8 6.9 20 54-73 42-61 (202)
27 PF03422 CBM_6: Carbohydrate b 29.9 3.1E+02 0.0068 22.4 11.9 95 85-185 21-124 (125)
28 TIGR00548 lolB outer membrane 26.1 1.8E+02 0.004 27.0 6.1 18 55-72 43-60 (202)
29 PF14054 DUF4249: Domain of un 26.1 5.7E+02 0.012 24.2 10.1 17 99-115 92-108 (298)
30 COG3017 LolB Outer membrane li 24.3 2.1E+02 0.0045 27.5 6.0 20 54-73 46-65 (206)
31 PF14344 DUF4397: Domain of un 24.2 1E+02 0.0023 25.5 3.7 50 240-290 28-84 (122)
32 cd08894 SRPBCC_CalC_Aha1-like_ 22.4 4.7E+02 0.01 21.9 9.6 64 275-341 44-107 (139)
33 PF14761 HPS3_N: Hermansky-Pud 21.9 5.2E+02 0.011 24.9 8.3 97 77-191 29-135 (215)
34 PF07675 Cleaved_Adhesin: Clea 21.6 5.9E+02 0.013 22.8 11.4 85 266-363 64-167 (167)
35 PF13991 BssS: BssS protein fa 21.2 1E+02 0.0022 25.0 2.8 45 56-116 2-47 (73)
36 PRK02710 plastocyanin; Provisi 21.0 4.7E+02 0.01 22.1 7.2 15 101-115 82-96 (119)
37 COG4549 Uncharacterized protei 20.9 5.5E+02 0.012 24.1 7.9 12 52-63 67-78 (178)
38 PRK15252 putative fimbrial-lik 20.4 6.7E+02 0.015 26.0 9.1 93 26-131 27-126 (344)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-128 Score=957.65 Aligned_cols=357 Identities=67% Similarity=1.139 Sum_probs=347.0
Q ss_pred HHHHHHHhhccccccccccCCccCCCCCCCCCCCCCcceEEecCCCCCCcEEeeeEEEEeCCCCCCCceeecCCCceEEE
Q 017636 11 ALGLLLLLSGPAFAAKYFEGYLPNGDFEELPKPTNLKKTVLVGKHALPKWEINGFVEFIAGGPQPGGMFFPVSHGVHAIR 90 (368)
Q Consensus 11 ~~~~~~~~~~~~~~~a~~~nLL~NG~FE~gP~~~~~~gt~~~g~s~IpgW~i~G~VeyI~sg~~~g~m~~~vPeG~~AV~ 90 (368)
.++||+++++++.+++.++|||+|||||++|++++++++++++.++||||+|+|.||||+++||||||+|.||+|+||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~~Av~ 88 (373)
T PLN03089 9 LLLLLLLCAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGAHAVR 88 (373)
T ss_pred HHHHHHHHhcccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCchhhh
Confidence 34445666666777889999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eCCcceeeEEEeecCCCeEEEEEEeCCCCCCcceEEEEeCCCcceeeeeeeeecCC-eEEEEEEEEccceEEEEEECCCC
Q 017636 91 LGNEASISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDING-DTYAWGFRAKTNIVTVTFHNPGV 169 (368)
Q Consensus 91 LG~easI~Q~~~t~~G~~Y~LTFsaar~ca~~~~l~Vsv~~~s~~~~~qt~y~s~g-~~~s~~F~A~~~~t~L~F~s~~~ 169 (368)
||+|++|+|+|+|++|++|+|||+++|+|+|+|.|+|+|++++++||+||+|++++ ++|+|+|+|++++|+|+||+++.
T Consensus 89 LG~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~~~~ 168 (373)
T PLN03089 89 LGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNPGV 168 (373)
T ss_pred cCCCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEECccc
Confidence 99999999999999999999999999999999999999999999999999998888 99999999999999999999999
Q ss_pred CCCCCcceeeecccccccCCCCcCccccccCCCcccccccccCCCCeeecCCCccCCCCCCCCcEEeeeceeeEeecCCc
Q 017636 170 QEDPACGPLIDAVAIKELYPPMPTRDNLVKNPGFEEGPHRLVNTTNGVLLPPRQEDLTSPLPGWIIESLKAVKFIDAKHF 249 (368)
Q Consensus 170 ~~~~~CGPvID~VaV~~l~~p~~~~~Nll~NG~FE~Gp~~~pn~~~gvl~p~~~~~~~s~lpgW~v~s~kaV~yid~~h~ 249 (368)
++|++|||+||||+||+|++|+++++|||+||+||||||+|||++|||||||+++|++||||||||||+|+|||||++||
T Consensus 169 ~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h~ 248 (373)
T PLN03089 169 EEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAHF 248 (373)
T ss_pred CCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCcceeeEEEEccCCCeEEEEEEeccCCCCCCcceEEEEEeCCCceeeEEEeCCCCCcEEEEEEEEE
Q 017636 250 NVPYGHAAVELVAGRESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFESKGKGGFKSASLKFKA 329 (368)
Q Consensus 250 ~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~lsF~~gda~n~c~g~~~v~a~ag~~~~~~~~~s~G~gg~~~~~~~F~A 329 (368)
+||||+|||||++|+|++|+|+|+|+||++|+|+|+||||+|+|+|+|+|++++|+.+++|+|+|+|+|||++++++|+|
T Consensus 249 ~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~gg~~~~s~~F~A 328 (373)
T PLN03089 249 SVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGKGGFKRASLRFKA 328 (373)
T ss_pred cCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCCcceEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEeeceeccCCCCCcccceeeeeEEEeec
Q 017636 330 IAARTRITFFSTYYHTKINDFGSLCGPVLDEVRVLSIR 367 (368)
Q Consensus 330 ~~~~Trv~F~S~~~~~~~d~~~~~cGpviDdV~v~~~~ 367 (368)
+++||||+|+|++||||+||++++||||||||+|++++
T Consensus 329 ~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~ 366 (373)
T PLN03089 329 VSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVR 366 (373)
T ss_pred ccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEcc
Confidence 99999999999999999999999999999999999874
No 2
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=1.6e-46 Score=335.34 Aligned_cols=156 Identities=49% Similarity=0.838 Sum_probs=147.7
Q ss_pred CCccCCCCCCCCCCCCCcceEEe-cCCCCCCcEEeeeEEEEeCCCCCCCceeecCCCceEEEeCCcceeeEEEeecCCCe
Q 017636 30 GYLPNGDFEELPKPTNLKKTVLV-GKHALPKWEINGFVEFIAGGPQPGGMFFPVSHGVHAIRLGNEASISQTITVKPGAL 108 (368)
Q Consensus 30 nLL~NG~FE~gP~~~~~~gt~~~-g~s~IpgW~i~G~VeyI~sg~~~g~m~~~vPeG~~AV~LG~easI~Q~~~t~~G~~ 108 (368)
|||+||+||++|.+.+++++.+. +.++||||+++|.||||+++|++|+|++.+|+|+||||||++++|+|+|+|++|++
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~t~~G~~ 80 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFTTVPGST 80 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEEccCCCE
Confidence 79999999999998777776665 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcceEEEEeCCC-cceeeeeeeeecCC-eEEEEEEEEccceEEEEEECCCCCCCCCcceeeeccccc
Q 017636 109 YALTFGASRTCAQDEVLRVSVPPQ-SGDLPLQTLYDING-DTYAWGFRAKTNIVTVTFHNPGVQEDPACGPLIDAVAIK 185 (368)
Q Consensus 109 Y~LTFsaar~ca~~~~l~Vsv~~~-s~~~~~qt~y~s~g-~~~s~~F~A~~~~t~L~F~s~~~~~~~~CGPvID~VaV~ 185 (368)
|+|||+++|+|++.+.|+|+|+++ +.++++++.+++.+ ++|+|.|+|.+++++|.|++++.++|++|||+||||+||
T Consensus 81 Y~LtF~~~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 81 YTLTFSLARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESDSACGPVIDNVSVK 159 (159)
T ss_pred EEEEEEecCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCCCCceeEEEEEEeC
Confidence 999999999999999999999985 78999999998887 999999999999999999999888899999999999997
No 3
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=338.67 Aligned_cols=157 Identities=27% Similarity=0.497 Sum_probs=144.3
Q ss_pred CCcCccccccCCCcccccccc-cCCCCeeecCCCccCCCCCCCCcEEeeeceeeEeecCC------ccCCCCceeEEecc
Q 017636 190 PMPTRDNLVKNPGFEEGPHRL-VNTTNGVLLPPRQEDLTSPLPGWIIESLKAVKFIDAKH------FNVPYGHAAVELVA 262 (368)
Q Consensus 190 p~~~~~Nll~NG~FE~Gp~~~-pn~~~gvl~p~~~~~~~s~lpgW~v~s~kaV~yid~~h------~~vp~G~~aveL~~ 262 (368)
....++|||+||+||+||+.+ ||.+ .++++|+||||+|++ .|||||++| |.||+|++||||
T Consensus 22 ~~~~~~nLL~NG~FE~gP~~~~~n~t--------~~~g~s~LPgW~i~g--~VeyI~s~~~~~~m~~~vP~G~~Av~L-- 89 (373)
T PLN03089 22 AAPVTDGLLPNGDFETPPKKSQMNGT--------VVIGKNAIPGWEISG--FVEYISSGQKQGGMLLVVPEGAHAVRL-- 89 (373)
T ss_pred cccccCCeecCCCccCCCCcCCCCcc--------cccCCCCCCCCEecC--cEEEEeCCCccCceeEECCCCchhhhc--
Confidence 345688999999999999988 6754 457899999999964 999999999 999999999999
Q ss_pred CCcceeeEEEEccCCCeEEEEEEeccCCCCCCcceEEEEEeCCCceeeEEEe-CCCCCcEEEEEEEEEcccceEEEEEEe
Q 017636 263 GRESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFES-KGKGGFKSASLKFKAIAARTRITFFST 341 (368)
Q Consensus 263 g~e~aI~Q~v~T~~G~~Y~lsF~~gda~n~c~g~~~v~a~ag~~~~~~~~~s-~G~gg~~~~~~~F~A~~~~Trv~F~S~ 341 (368)
|+|++|+|+|+|++|+.|+|||+++ +.|.++|.|++++++.+++|+|++ .+++||+++++.|+|++++|||+|.
T Consensus 90 G~e~sI~Q~i~t~~G~~Y~LTFs~a---r~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~-- 164 (373)
T PLN03089 90 GNEASISQTLTVTKGSYYSLTFSAA---RTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFH-- 164 (373)
T ss_pred CCCceEEEEEEccCCCEEEEEEEec---CCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEE--
Confidence 9999999999999999999999986 789999999999999999999998 6999999999999999999999998
Q ss_pred eceeccCCCCCcccceeeeeEEEee
Q 017636 342 YYHTKINDFGSLCGPVLDEVRVLSI 366 (368)
Q Consensus 342 ~~~~~~d~~~~~cGpviDdV~v~~~ 366 (368)
+|+++.| ++|||+||||+|..+
T Consensus 165 ~~~~~~D---~~CGPviD~VaIk~l 186 (373)
T PLN03089 165 NPGVEED---PACGPLIDAVAIKTL 186 (373)
T ss_pred CcccCCC---CcccceeeeEEEeec
Confidence 6788776 689999999999854
No 4
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=2.7e-39 Score=288.77 Aligned_cols=148 Identities=40% Similarity=0.669 Sum_probs=125.5
Q ss_pred ccccCCCccccccccc-CCCCeeecCCCccCCCCCCCCcEEeeeceeeEeecCCcc------CCCCceeEEeccCCccee
Q 017636 196 NLVKNPGFEEGPHRLV-NTTNGVLLPPRQEDLTSPLPGWIIESLKAVKFIDAKHFN------VPYGHAAVELVAGRESAI 268 (368)
Q Consensus 196 Nll~NG~FE~Gp~~~p-n~~~gvl~p~~~~~~~s~lpgW~v~s~kaV~yid~~h~~------vp~G~~aveL~~g~e~aI 268 (368)
|||+||+||+||+.++ +.++ .++..++||||+|++ .||||++.|+. ||+|+||||| |++++|
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~-------~~~~~s~ipGWtv~g--~Ve~i~~~~~~g~~~~~~p~G~~aveL--g~~~~I 69 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTS-------LSDGSSSIPGWTVSG--SVEYIDSGHFQGGMYFAVPEGKQAVEL--GNEGSI 69 (159)
T ss_pred CCccCCCCCCCCccCCCCcce-------EccCCCcCCCcEEcC--EEEEEecCCccCceeeeCCCCceEEEc--CCCceE
Confidence 8999999999999766 4444 557889999999975 49999999998 9999999999 899999
Q ss_pred eEEEEccCCCeEEEEEEeccCCCCCCc--ceEEEEEeCCCceeeEEEeCC-CCCcEEEEEEEEEcccceEEEEEEeecee
Q 017636 269 AQILRTVPNKEYNLTFTIGDAKNGCHG--SMRVEAFAGKDTVAVPFESKG-KGGFKSASLKFKAIAARTRITFFSTYYHT 345 (368)
Q Consensus 269 ~Q~v~T~~G~~Y~lsF~~gda~n~c~g--~~~v~a~ag~~~~~~~~~s~G-~gg~~~~~~~F~A~~~~Trv~F~S~~~~~ 345 (368)
+|+|+|++|++|+|+|+++ +.|.+ .|.|++.+. .+..+++++.. +++|+++++.|+| ++ ||++|.+..+++
T Consensus 70 ~Q~~~t~~G~~Y~LtF~~~---~~~~~~~~l~V~v~~~-~~~~~~~~~~~~~~~w~~~s~~F~A-~~-t~~~l~f~~~~~ 143 (159)
T PF04862_consen 70 SQTFTTVPGSTYTLTFSLA---RNCAQSESLSVSVGGQ-FSFVVTIQTSYGSGGWDTYSFTFTA-SS-TRITLTFHNPGM 143 (159)
T ss_pred EEEEEccCCCEEEEEEEec---CCCCCCccEEEEEecc-cceEEEeeccCCCCCcEEEEEEEEe-CC-CEEEEEEECCCc
Confidence 9999999999999999997 55655 466666553 57788888764 4669999999999 55 888888887777
Q ss_pred ccCCCCCcccceeeeeEE
Q 017636 346 KINDFGSLCGPVLDEVRV 363 (368)
Q Consensus 346 ~~d~~~~~cGpviDdV~v 363 (368)
+.| .+|||+||||+|
T Consensus 144 ~~d---~~cGp~iDnV~v 158 (159)
T PF04862_consen 144 ESD---SACGPVIDNVSV 158 (159)
T ss_pred cCC---CCceeEEEEEEe
Confidence 744 499999999998
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.94 E-value=3e-08 Score=82.02 Aligned_cols=115 Identities=22% Similarity=0.322 Sum_probs=77.3
Q ss_pred cccccCCCcccccccccCCCCeeecCCCccCCCCCCCCcEEeeec-eeeEeecCCccCCCCceeEEeccCCc---ceeeE
Q 017636 195 DNLVKNPGFEEGPHRLVNTTNGVLLPPRQEDLTSPLPGWIIESLK-AVKFIDAKHFNVPYGHAAVELVAGRE---SAIAQ 270 (368)
Q Consensus 195 ~Nll~NG~FE~Gp~~~pn~~~gvl~p~~~~~~~s~lpgW~v~s~k-aV~yid~~h~~vp~G~~aveL~~g~e---~aI~Q 270 (368)
.|||+||+||+| .+.+|...... +...+|.. .|.+++.+-.+.. +...|
T Consensus 1 ~nli~N~~Fe~~----------------------~~~~W~~~~~~~~~~~~~~~-----~g~~~l~v~~~~~~~~~~~~~ 53 (131)
T PF02018_consen 1 GNLIKNGGFEDG----------------------GLSGWSFWGNSGASASVDNA-----SGNYSLKVSNRSATWDGQSQQ 53 (131)
T ss_dssp GBSSSSTTSTTT----------------------STTTEEEESSTTEEEEEEEC-----SSSEEEEEECCSSGCGEEEEE
T ss_pred CCEEECCCccCC----------------------CCCCCEEccCCCEEEEEEcC-----CCeEEEEEECCCCCcccccee
Confidence 499999999983 45678886522 34555554 8999998876654 33333
Q ss_pred -EEEccCCCeEEEEEEeccCCCCCCcceEEEEEeCCC--ceeeEE-EeCCCCCcEEEEEEEEEcccceEEEEE
Q 017636 271 -ILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKD--TVAVPF-ESKGKGGFKSASLKFKAIAARTRITFF 339 (368)
Q Consensus 271 -~v~T~~G~~Y~lsF~~gda~n~c~g~~~v~a~ag~~--~~~~~~-~s~G~gg~~~~~~~F~A~~~~Trv~F~ 339 (368)
.+...+|++|+|+|.+-.... ..+.+.+..... ...+.. ....++.|++.+++|++..+-+++.|+
T Consensus 54 ~~~~l~~G~~Y~~s~~vk~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~ 123 (131)
T PF02018_consen 54 QTISLKPGKTYTVSFWVKADSG---GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLY 123 (131)
T ss_dssp EEEEE-TTSEEEEEEEEEESSS---EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEE
T ss_pred cceEecCCCEEEEEEEEEeCCC---CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEE
Confidence 367899999999999955444 444455444444 233333 345568899999999999666666554
No 6
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.40 E-value=1.9e-05 Score=65.23 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=66.5
Q ss_pred cCCccCCCCCCCCCCCCCcceEEecCCCCCCcEEeee---EEEEeCCCCCCCceeecCCCceEEEe-CC-c--cee--eE
Q 017636 29 EGYLPNGDFEELPKPTNLKKTVLVGKHALPKWEINGF---VEFIAGGPQPGGMFFPVSHGVHAIRL-GN-E--ASI--SQ 99 (368)
Q Consensus 29 ~nLL~NG~FE~gP~~~~~~gt~~~g~s~IpgW~i~G~---VeyI~sg~~~g~m~~~vPeG~~AV~L-G~-e--asI--~Q 99 (368)
.|||.||+||+ ..+.+|...+. ...+ ..+.|.+++++ +. . ..+ .+
T Consensus 1 ~nli~N~~Fe~---------------~~~~~W~~~~~~~~~~~~-----------~~~~g~~~l~v~~~~~~~~~~~~~~ 54 (131)
T PF02018_consen 1 GNLIKNGGFED---------------GGLSGWSFWGNSGASASV-----------DNASGNYSLKVSNRSATWDGQSQQQ 54 (131)
T ss_dssp GBSSSSTTSTT---------------TSTTTEEEESSTTEEEEE-----------EECSSSEEEEEECCSSGCGEEEEEE
T ss_pred CCEEECCCccC---------------CCCCCCEEccCCCEEEEE-----------EcCCCeEEEEEECCCCCccccceec
Confidence 38999999999 23567887652 2222 22378888888 22 1 233 33
Q ss_pred EEeecCCCeEEEEEEeCCCCCCcceEEEEeCCCc--ceeeeeeeeecCC-eEEEEEEEEc--cceEEEEEEC
Q 017636 100 TITVKPGALYALTFGASRTCAQDEVLRVSVPPQS--GDLPLQTLYDING-DTYAWGFRAK--TNIVTVTFHN 166 (368)
Q Consensus 100 ~~~t~~G~~Y~LTFsaar~ca~~~~l~Vsv~~~s--~~~~~qt~y~s~g-~~~s~~F~A~--~~~t~L~F~s 166 (368)
.+.+++|..|+|+|.+.......-.|.+...... ..+..+..-.+.. +.++..|++. .+.++|.|+.
T Consensus 55 ~~~l~~G~~Y~~s~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 55 TISLKPGKTYTVSFWVKADSGGTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEEE-TTSEEEEEEEEEESSSEEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred ceEecCCCEEEEEEEEEeCCCCEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 4689999999999998444333333444444431 1221112222333 9999999888 4455666665
No 7
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=91.51 E-value=5.8 Score=34.23 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=57.6
Q ss_pred eEEEEEEeccCCCCCCcceEEEEEeCCC-ceeeEEEeCCC--CCcEEEEEEEEEcccceEEEEEEeeceeccCCCCCccc
Q 017636 279 EYNLTFTIGDAKNGCHGSMRVEAFAGKD-TVAVPFESKGK--GGFKSASLKFKAIAARTRITFFSTYYHTKINDFGSLCG 355 (368)
Q Consensus 279 ~Y~lsF~~gda~n~c~g~~~v~a~ag~~-~~~~~~~s~G~--gg~~~~~~~F~A~~~~Trv~F~S~~~~~~~d~~~~~cG 355 (368)
..-|+|.+--.+.. .+.+.|.+..... ....-++.+|. ..|+++++++.+....-+|.|....- . +....
T Consensus 72 ~~Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~----~--~~~g~ 144 (157)
T cd06263 72 SHCLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG----S--GSRGD 144 (157)
T ss_pred CeEEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC----C--Ccccc
Confidence 44499988555533 6778888776665 23444555555 67999999999998999999999742 1 23455
Q ss_pred ceeeeeEEEe
Q 017636 356 PVLDEVRVLS 365 (368)
Q Consensus 356 pviDdV~v~~ 365 (368)
=.||||+|.+
T Consensus 145 IAIDdI~l~~ 154 (157)
T cd06263 145 IALDDISLSP 154 (157)
T ss_pred EEEeEEEEec
Confidence 6899999975
No 8
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=76.70 E-value=32 Score=32.63 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=38.8
Q ss_pred ccccccCCCcccccccccCCCCeeecCCCccCCCCCCCCcEEeeec-----eeeEeecCCccCCCCceeEEeccCCc---
Q 017636 194 RDNLVKNPGFEEGPHRLVNTTNGVLLPPRQEDLTSPLPGWIIESLK-----AVKFIDAKHFNVPYGHAAVELVAGRE--- 265 (368)
Q Consensus 194 ~~Nll~NG~FE~Gp~~~pn~~~gvl~p~~~~~~~s~lpgW~v~s~k-----aV~yid~~h~~vp~G~~aveL~~g~e--- 265 (368)
..||||||+|.+ |-.+-+. ....-.+.-|-++-.+ .+-++.+.--. .| .++++ ++.+
T Consensus 5 AQnLIkN~~F~t-~Lt~e~~----------~as~~T~~~Wfavnde~~G~Tt~a~~~tnD~k--~~-na~~i-s~~~~~t 69 (212)
T PF15425_consen 5 AQNLIKNGDFDT-PLTNENT----------TASNTTFGKWFAVNDEWDGATTIAWINTNDQK--TG-NAWGI-SSWDKQT 69 (212)
T ss_dssp -----SSTT--S-----B-S----------SGGGS-TTSEEEEE-S-TTS-EEEEEE-S-TT--S--EEEEE-TT-SS--
T ss_pred hhhhhhcCccCc-chhcccc----------CcCcccccceEEEecccCCceEeeeeccCccc--cc-ceEEE-eecccCc
Confidence 459999999996 4332221 1233356778776212 33444332211 22 56777 3322
Q ss_pred ----ceeeEEE-EccCCCeEEEEEEeccCCCC
Q 017636 266 ----SAIAQIL-RTVPNKEYNLTFTIGDAKNG 292 (368)
Q Consensus 266 ----~aI~Q~v-~T~~G~~Y~lsF~~gda~n~ 292 (368)
+-+.|.+ .-.....|+|+|....--++
T Consensus 70 sWykafLaQr~~~gae~~mYtLsF~AkA~t~g 101 (212)
T PF15425_consen 70 SWYKAFLAQRYTNGAEKGMYTLSFDAKADTNG 101 (212)
T ss_dssp -TTTEEEEEEE-S---SSEEEEEEEEEESSTT
T ss_pred HHHHHHHHHHHhcccccceEEEEEEeecccCC
Confidence 7799999 57888899999997654444
No 9
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=72.62 E-value=43 Score=31.75 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=32.8
Q ss_pred ccCCccCCCCCCCCCCCCCcceEEecCCCCCCcEEe-----e--eEEEEeCCCCCCCceeecCCCceEEEe-CCc-----
Q 017636 28 FEGYLPNGDFEELPKPTNLKKTVLVGKHALPKWEIN-----G--FVEFIAGGPQPGGMFFPVSHGVHAIRL-GNE----- 94 (368)
Q Consensus 28 ~~nLL~NG~FE~gP~~~~~~gt~~~g~s~IpgW~i~-----G--~VeyI~sg~~~g~m~~~vPeG~~AV~L-G~e----- 94 (368)
+.|||+||+|.+ |.... + .-.....+..|-+. | ..-++.++.++ .| .++++ +-+
T Consensus 5 AQnLIkN~~F~t-~Lt~e-~--~~as~~T~~~Wfavnde~~G~Tt~a~~~tnD~k--------~~-na~~is~~~~~tsW 71 (212)
T PF15425_consen 5 AQNLIKNGDFDT-PLTNE-N--TTASNTTFGKWFAVNDEWDGATTIAWINTNDQK--------TG-NAWGISSWDKQTSW 71 (212)
T ss_dssp -----SSTT--S-----B----SSGGGS-TTSEEEEE-S-TTS-EEEEEE-S-TT--------S--EEEEETT-SS---T
T ss_pred hhhhhhcCccCc-chhcc-c--cCcCcccccceEEEecccCCceEeeeeccCccc--------cc-ceEEEeecccCcHH
Confidence 479999999996 54321 0 00122345666653 1 34444444322 12 25666 322
Q ss_pred --ceeeEEE-eecCCCeEEEEEEeC
Q 017636 95 --ASISQTI-TVKPGALYALTFGAS 116 (368)
Q Consensus 95 --asI~Q~~-~t~~G~~Y~LTFsaa 116 (368)
+-+.|.+ .-..-..|.|+|.|.
T Consensus 72 ykafLaQr~~~gae~~mYtLsF~Ak 96 (212)
T PF15425_consen 72 YKAFLAQRYTNGAEKGMYTLSFDAK 96 (212)
T ss_dssp TTEEEEEEE-S---SSEEEEEEEEE
T ss_pred HHHHHHHHHhcccccceEEEEEEee
Confidence 6788999 445556799999983
No 10
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=72.42 E-value=53 Score=27.44 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=45.0
Q ss_pred eEEEEccCCCeEEEEEEeccCCCCCCcceEEEEEeCC-CceeeEE--EeCCCCCcEEEEEEEEEcccceEEEEEEeecee
Q 017636 269 AQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGK-DTVAVPF--ESKGKGGFKSASLKFKAIAARTRITFFSTYYHT 345 (368)
Q Consensus 269 ~Q~v~T~~G~~Y~lsF~~gda~n~c~g~~~v~a~ag~-~~~~~~~--~s~G~gg~~~~~~~F~A~~~~Trv~F~S~~~~~ 345 (368)
+..+ ...+ .+-|+|.+--.+.. .+.+.|.+.... ...+... .......|+++.+++.+....-+|.|....-
T Consensus 65 Sp~~-~~~~-~~cl~F~y~~~g~~-~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~-- 139 (160)
T PF00629_consen 65 SPVF-PASG-NSCLSFWYYMYGSS-VGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRG-- 139 (160)
T ss_dssp EEEE---SS---EEEEEEEEE-SS-SEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE---
T ss_pred cccc-cccc-cceeEEEEeecccc-ceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEc--
Confidence 4444 3334 44499988554332 356777666652 1222222 3233468999999999999999999998632
Q ss_pred ccCCCCCcccceeeeeEEEe
Q 017636 346 KINDFGSLCGPVLDEVRVLS 365 (368)
Q Consensus 346 ~~d~~~~~cGpviDdV~v~~ 365 (368)
. +.--.=.||||++.+
T Consensus 140 --~--~~~~~iaiDdi~~~~ 155 (160)
T PF00629_consen 140 --S--SYRGDIAIDDISLSP 155 (160)
T ss_dssp -----SS--EEEEEEEEEES
T ss_pred --C--CCceEEEEEEEEEeC
Confidence 1 111334599999973
No 11
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=71.35 E-value=16 Score=34.50 Aligned_cols=76 Identities=28% Similarity=0.444 Sum_probs=51.2
Q ss_pred CCcEE------eeeEEEEeCC-CCCCCceeecCCCceEEEe--------CCcceeeEEE-----eecCCCeEEEEEEeCC
Q 017636 58 PKWEI------NGFVEFIAGG-PQPGGMFFPVSHGVHAIRL--------GNEASISQTI-----TVKPGALYALTFGASR 117 (368)
Q Consensus 58 pgW~i------~G~VeyI~sg-~~~g~m~~~vPeG~~AV~L--------G~easI~Q~~-----~t~~G~~Y~LTFsaar 117 (368)
..|++ .+.++|-... ......||.+|++...|.+ |.+-+-.+++ .+.+|.+|.|+|.+..
T Consensus 127 ~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~~~~~ 206 (235)
T PF14900_consen 127 SDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTFDPSD 206 (235)
T ss_pred cceEEEEEccCCccEEEeeccCCCCcceEEECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEEeecc
Confidence 66776 2257762221 1235678999997777776 3222344444 6899999999999986
Q ss_pred CCCCcceEEEEeCCCc
Q 017636 118 TCAQDEVLRVSVPPQS 133 (368)
Q Consensus 118 ~ca~~~~l~Vsv~~~s 133 (368)
.-.+...+.+.|....
T Consensus 207 ~~~g~~~i~I~vd~~~ 222 (235)
T PF14900_consen 207 SSAGSIGITITVDDTT 222 (235)
T ss_pred CCCCeeEEEEEEeCCe
Confidence 6666778888887753
No 12
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=65.43 E-value=96 Score=27.25 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=55.3
Q ss_pred eEEEEEEeccCCCCCCcceEEEEEe-CCCceeeEEEeCCC--CCcEEEEEEEEEcccceEEEEEEeeceeccCCCCCccc
Q 017636 279 EYNLTFTIGDAKNGCHGSMRVEAFA-GKDTVAVPFESKGK--GGFKSASLKFKAIAARTRITFFSTYYHTKINDFGSLCG 355 (368)
Q Consensus 279 ~Y~lsF~~gda~n~c~g~~~v~a~a-g~~~~~~~~~s~G~--gg~~~~~~~F~A~~~~Trv~F~S~~~~~~~d~~~~~cG 355 (368)
.+-|+|.+--.+ ...|.+.|.+.. +....+.-++..|. ..|+++.+.+......-+|.|.... .. +...-
T Consensus 76 ~~cl~F~Y~m~G-~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~----g~--~~~g~ 148 (161)
T smart00137 76 THCLTFWYYMYG-SGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTR----GK--GHSGY 148 (161)
T ss_pred CeEEEEEEEecC-CCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEE----cC--Cccce
Confidence 566999874443 235667777653 33333444666666 4599999999988888999999974 22 33445
Q ss_pred ceeeeeEEEe
Q 017636 356 PVLDEVRVLS 365 (368)
Q Consensus 356 pviDdV~v~~ 365 (368)
=.||||++.+
T Consensus 149 IAiDDI~i~~ 158 (161)
T smart00137 149 IALDDILLSN 158 (161)
T ss_pred EEEeEEEeec
Confidence 6899999975
No 13
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=52.58 E-value=1.5e+02 Score=25.28 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=41.8
Q ss_pred EEEEccCCCeEEEEEEecc------CCCCCCcceEEEEEeCCCceeeEEEeC--CCCCcEEEEEEEEEcccceEEEEEEe
Q 017636 270 QILRTVPNKEYNLTFTIGD------AKNGCHGSMRVEAFAGKDTVAVPFESK--GKGGFKSASLKFKAIAARTRITFFST 341 (368)
Q Consensus 270 Q~v~T~~G~~Y~lsF~~gd------a~n~c~g~~~v~a~ag~~~~~~~~~s~--G~gg~~~~~~~F~A~~~~Trv~F~S~ 341 (368)
..++-.+|-.|++.|...+ .++.+.....+....-...+.+...-. +..+-....++|.+....|+|++.-.
T Consensus 39 ~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~lt~~~~ 118 (146)
T cd08895 39 HEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNERIVYTDVFDDPSLSGEMTMTWTLSPVSGGTDVTIVQS 118 (146)
T ss_pred EEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCCEEEEEEEecCCCCCceEEEEEEEEecCCCEEEEEEEe
Confidence 3566677888888776533 122222233344344444443332221 11233468899999999999999886
Q ss_pred e
Q 017636 342 Y 342 (368)
Q Consensus 342 ~ 342 (368)
.
T Consensus 119 ~ 119 (146)
T cd08895 119 G 119 (146)
T ss_pred C
Confidence 4
No 14
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=51.87 E-value=73 Score=24.06 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCCCceeEEeccCCcceeeEEEEccCCCeEEEEEEec
Q 017636 251 VPYGHAAVELVAGRESAIAQILRTVPNKEYNLTFTIG 287 (368)
Q Consensus 251 vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~lsF~~g 287 (368)
+|.|.+.|++-...--...+.|.-.+|+...|.+.|-
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 7788888888666555677888888888888888873
No 15
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=51.38 E-value=1e+02 Score=26.40 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred CeEEEEEEeCCCCCCcceEEEEeCCCcc--eeeeeeeeec--CC-eEEEEEEEEccceEEEEEECCCCCCCCCcceeeec
Q 017636 107 ALYALTFGASRTCAQDEVLRVSVPPQSG--DLPLQTLYDI--NG-DTYAWGFRAKTNIVTVTFHNPGVQEDPACGPLIDA 181 (368)
Q Consensus 107 ~~Y~LTFsaar~ca~~~~l~Vsv~~~s~--~~~~qt~y~s--~g-~~~s~~F~A~~~~t~L~F~s~~~~~~~~CGPvID~ 181 (368)
...-|+|..-..-.....|+|.+..... ..++-+.... .. ....+.+.+.....+|+|....- .+....=.|||
T Consensus 71 ~~~Cl~F~y~~~g~~~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~-~~~~g~IAIDd 149 (157)
T cd06263 71 SSHCLSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG-SGSRGDIALDD 149 (157)
T ss_pred CCeEEEEEEEecCCCCCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC-CCccccEEEeE
Confidence 3455999862221214567777765443 3333333322 22 88889999988889999998421 23456678999
Q ss_pred ccccc
Q 017636 182 VAIKE 186 (368)
Q Consensus 182 VaV~~ 186 (368)
|+|..
T Consensus 150 I~l~~ 154 (157)
T cd06263 150 ISLSP 154 (157)
T ss_pred EEEec
Confidence 99873
No 16
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=51.23 E-value=28 Score=29.06 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=31.1
Q ss_pred CceeecCCCceEEEe---CCcc-----eeeEEEeecCCCeEEEEEE
Q 017636 77 GMFFPVSHGVHAIRL---GNEA-----SISQTITVKPGALYALTFG 114 (368)
Q Consensus 77 ~m~~~vPeG~~AV~L---G~ea-----sI~Q~~~t~~G~~Y~LTFs 114 (368)
-.|..+|.|.|-|++ |... -++.++...+|+.|+|--.
T Consensus 35 s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 35 SDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred cCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 347899999999999 5542 3578899999999999766
No 17
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=49.20 E-value=1.5e+02 Score=24.39 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=63.7
Q ss_pred CceeEEeccCCcceeeEEEEccCCCeEEEEEEeccCCCCCCcceEEEEEe--CCCceeeEEEeCCC-CCcEEEEEEEEEc
Q 017636 254 GHAAVELVAGRESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFA--GKDTVAVPFESKGK-GGFKSASLKFKAI 330 (368)
Q Consensus 254 G~~aveL~~g~e~aI~Q~v~T~~G~~Y~lsF~~gda~n~c~g~~~v~a~a--g~~~~~~~~~s~G~-gg~~~~~~~F~A~ 330 (368)
|.+.+-.+...+......|+--.+-.|+|++.+.....+ +.+.|.+.. |...-++.+..+|. ..|+..+...+..
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~--~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~ 98 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG--GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLP 98 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS--EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC--cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeC
Confidence 667777766666777777888889999999998665543 444444332 23445666655443 2366666666666
Q ss_pred ccceEEEEEEeeceeccCCCCCcccceeeeeEEE
Q 017636 331 AARTRITFFSTYYHTKINDFGSLCGPVLDEVRVL 364 (368)
Q Consensus 331 ~~~Trv~F~S~~~~~~~d~~~~~cGpviDdV~v~ 364 (368)
.-+-+|.|.... + .. |.+=||-+++.
T Consensus 99 ~G~h~i~l~~~~-----~--~~-~~~niD~~~f~ 124 (125)
T PF03422_consen 99 AGKHTIYLVFNG-----G--DG-WAFNIDYFQFT 124 (125)
T ss_dssp SEEEEEEEEESS-----S--SS-B-EEEEEEEEE
T ss_pred CCeeEEEEEEEC-----C--CC-ceEEeEEEEEE
Confidence 666678888752 1 11 77778887764
No 18
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=48.18 E-value=55 Score=24.75 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=29.5
Q ss_pred ecCCCceEEEe--CCcceeeEEEeecCCCeEEEEEEeC
Q 017636 81 PVSHGVHAIRL--GNEASISQTITVKPGALYALTFGAS 116 (368)
Q Consensus 81 ~vPeG~~AV~L--G~easI~Q~~~t~~G~~Y~LTFsaa 116 (368)
.+|.|.|.|++ .+--...+++.+.+|+...|.+.+.
T Consensus 31 ~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 31 DLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred ecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 38999999999 2234577899999999999999874
No 19
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=44.36 E-value=1.9e+02 Score=24.32 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=39.8
Q ss_pred ccCCCeEEEEEEeccCCCCCCcceEEEEEeCCCceeeEEEeCCCCCcEEEEEEEEEcc-cceEEEEEEee
Q 017636 274 TVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFESKGKGGFKSASLKFKAIA-ARTRITFFSTY 342 (368)
Q Consensus 274 T~~G~~Y~lsF~~gda~n~c~g~~~v~a~ag~~~~~~~~~s~G~gg~~~~~~~F~A~~-~~Trv~F~S~~ 342 (368)
-.+|..|+..|.+.+.. . ...+....-...+.+.+. +.+...+..++|.+.. ..|+|++.-..
T Consensus 37 ~~~Gg~~~~~~~~~~~~--~--~g~~~~~~p~~~l~~~w~--~~~~~s~v~~~l~~~~~ggT~ltl~~~~ 100 (136)
T cd08901 37 LEEGKTVTWDWEMYGAS--V--PVNVLEIEPNKRIVIEWG--DPGEPTTVEWTFEELDDGRTFVTITESG 100 (136)
T ss_pred ccCCCEEEEEEEccCCc--e--EEEEEEEcCCCEEEEEec--CCCCCEEEEEEEEECCCCcEEEEEEECC
Confidence 34788888888775421 1 123333333334444333 3345678899999988 89999999664
No 20
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=41.63 E-value=67 Score=26.98 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=30.9
Q ss_pred CceeecCCCceEEEeC-CcceeeEEE-----eecCCCeEEEEEEe-CCCCC
Q 017636 77 GMFFPVSHGVHAIRLG-NEASISQTI-----TVKPGALYALTFGA-SRTCA 120 (368)
Q Consensus 77 ~m~~~vPeG~~AV~LG-~easI~Q~~-----~t~~G~~Y~LTFsa-ar~ca 120 (368)
|=+|..-.|.-+|||| -....++++ ..++|+.|.+.|-. -|-..
T Consensus 28 DDvWVFIn~kLv~DlGG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~~ERht~ 78 (90)
T TIGR02148 28 DDVWVFINNKLVVDIGGQHPAVPGAVDLDTLGLKEGKTYPFDIFYCERHTT 78 (90)
T ss_pred CeEEEEECCEEEEEccCcCCCcccEEEhhhcCCccCcEeeEEEEEEeecCC
Confidence 4468888999999995 333334444 47899999999965 44433
No 21
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=41.36 E-value=1.2e+02 Score=25.28 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=40.2
Q ss_pred CCeEEEEEEeCCCCCCcceEEEEeCCC--cceeeeeeeeec--CC-eEEEEEEEEccceEEEEEECCCCCCCCCcceeee
Q 017636 106 GALYALTFGASRTCAQDEVLRVSVPPQ--SGDLPLQTLYDI--NG-DTYAWGFRAKTNIVTVTFHNPGVQEDPACGPLID 180 (368)
Q Consensus 106 G~~Y~LTFsaar~ca~~~~l~Vsv~~~--s~~~~~qt~y~s--~g-~~~s~~F~A~~~~t~L~F~s~~~~~~~~CGPvID 180 (368)
...+-|+|..-..-.....|+|.+... ...-++-+.... .. ....+.+.+.....+|+|....- .+..-.=.||
T Consensus 71 ~~~~cl~F~y~~~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~-~~~~~~iaiD 149 (160)
T PF00629_consen 71 SGNSCLSFWYYMYGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRG-SSYRGDIAID 149 (160)
T ss_dssp SS--EEEEEEEEE-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE---SS--EEEEE
T ss_pred cccceeEEEEeeccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEc-CCCceEEEEE
Confidence 335669999732222224577777654 122222222222 22 88899999989999999987321 1223456799
Q ss_pred cccccc
Q 017636 181 AVAIKE 186 (368)
Q Consensus 181 ~VaV~~ 186 (368)
||.|..
T Consensus 150 di~~~~ 155 (160)
T PF00629_consen 150 DISLSP 155 (160)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999983
No 22
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=38.53 E-value=2e+02 Score=22.93 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=42.5
Q ss_pred EccCCCeEEEEEEeccCCCCCCcceEEEEEeCCCceeeEEEeCCC--CCcEEEEEEEEEcccceEEEEEEee
Q 017636 273 RTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFESKGK--GGFKSASLKFKAIAARTRITFFSTY 342 (368)
Q Consensus 273 ~T~~G~~Y~lsF~~gda~n~c~g~~~v~a~ag~~~~~~~~~s~G~--gg~~~~~~~F~A~~~~Trv~F~S~~ 342 (368)
+..+|..|++ ..+.+..+.....+....-...+.+.+...+. +...+..+.|.+...+|+|.+.-..
T Consensus 29 ~~~~Gg~~~~---~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~l~~~~~~ 97 (124)
T PF08327_consen 29 DFRPGGSFRF---MDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPESRVTFEFEEEGGGTRLTLTHSG 97 (124)
T ss_dssp ECSTTEEEEE---EETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeecCCEEEE---EecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCceEEEEEEEEcCCcEEEEEEEEc
Confidence 3456776666 22333333344445556666666666554432 3467888999999999999998753
No 23
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=35.63 E-value=35 Score=24.07 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=7.7
Q ss_pred cccCCccCCC
Q 017636 27 YFEGYLPNGD 36 (368)
Q Consensus 27 ~~~nLL~NG~ 36 (368)
...+.+.||+
T Consensus 22 ~pG~ViING~ 31 (36)
T PF08194_consen 22 TPGNVIINGK 31 (36)
T ss_pred CCCeEEECce
Confidence 4678889986
No 24
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=33.48 E-value=1.1e+02 Score=27.51 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=45.0
Q ss_pred eeecCCCccCCCCCCCCcEEeeeceee-------EeecCCccCCCCceeEEeccCCcceeeEEEEccCCCeEEEEEEecc
Q 017636 216 GVLLPPRQEDLTSPLPGWIIESLKAVK-------FIDAKHFNVPYGHAAVELVAGRESAIAQILRTVPNKEYNLTFTIGD 288 (368)
Q Consensus 216 gvl~p~~~~~~~s~lpgW~v~s~kaV~-------yid~~h~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~lsF~~gd 288 (368)
|||..| ..-|++|=+|+ +||.+ -.-+.+-.-..|.+++++--| .|+++..+..
T Consensus 7 GvL~dg----~G~pv~g~~I~-L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG---------------~Y~V~l~~~g 66 (134)
T PF08400_consen 7 GVLKDG----AGKPVPGCTIT-LKARRTSSTVVVGTVASVVTGEAGEYSFDVEPG---------------VYRVTLKVEG 66 (134)
T ss_pred EEEeCC----CCCcCCCCEEE-EEEccCchheEEEEEEEEEcCCCceEEEEecCC---------------eEEEEEEECC
Confidence 777665 66799999998 67753 111111112367777777544 4888888877
Q ss_pred CCCCCCcceEEEEEeCCCce
Q 017636 289 AKNGCHGSMRVEAFAGKDTV 308 (368)
Q Consensus 289 a~n~c~g~~~v~a~ag~~~~ 308 (368)
..-.|.|.+.|.-.-...|+
T Consensus 67 ~~~~~vG~I~V~~dS~pGTL 86 (134)
T PF08400_consen 67 RPPVYVGDITVYEDSKPGTL 86 (134)
T ss_pred CCceeEEEEEEecCCCCCcH
Confidence 66666677777644444443
No 25
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=32.58 E-value=3.9e+02 Score=29.83 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=58.8
Q ss_pred CCceeEEeccCCc--ceeeEEEEccCCCeEEEEEEeccCCCCCCcceEEE--EEeCCCce-eeEEEe-------CCC-CC
Q 017636 253 YGHAAVELVAGRE--SAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVE--AFAGKDTV-AVPFES-------KGK-GG 319 (368)
Q Consensus 253 ~G~~aveL~~g~e--~aI~Q~v~T~~G~~Y~lsF~~gda~n~c~g~~~v~--a~ag~~~~-~~~~~s-------~G~-gg 319 (368)
+|+++.=--.|.. ..+.+.|+-..++.=+|+|..-=.=-.---.+.|+ ..+|..+. ..+.+. .+. |+
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~sg~ 418 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFKAWYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGSSGG 418 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEeehheecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCCccc
Confidence 6666554433332 45667666544555567775311000001135555 23343332 222221 222 67
Q ss_pred cEEEEEEEEEcccc-eEEEEEEeeceeccCCCCCcccceeeeeEEE
Q 017636 320 FKSASLKFKAIAAR-TRITFFSTYYHTKINDFGSLCGPVLDEVRVL 364 (368)
Q Consensus 320 ~~~~~~~F~A~~~~-Trv~F~S~~~~~~~d~~~~~cGpviDdV~v~ 364 (368)
|+..+++-.|=+-+ -+|.|.=. +|..-..-|-+||||+|.
T Consensus 419 Wv~~~~DLSayAGqtV~LrFrY~-----TD~~v~~~G~~vDdi~v~ 459 (645)
T PF05547_consen 419 WVDASFDLSAYAGQTVQLRFRYV-----TDGGVAGRGFYVDDIRVT 459 (645)
T ss_pred eeEeEeccccccCCeEEEEEEEE-----cCCCccCCcEEEEEEEEE
Confidence 99999999985544 46777543 464456678999999996
No 26
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=30.93 E-value=1.8e+02 Score=26.81 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=15.3
Q ss_pred CCCCCCcEEeeeEEEEeCCC
Q 017636 54 KHALPKWEINGFVEFIAGGP 73 (368)
Q Consensus 54 ~s~IpgW~i~G~VeyI~sg~ 73 (368)
-..|..|+++|.+-|...++
T Consensus 42 l~~l~~w~~~Gria~~~~~~ 61 (202)
T PRK00022 42 LQQITQYQTRGRFAYISPQQ 61 (202)
T ss_pred HhhhhceEEEEEEEEECCCc
Confidence 34789999999888775544
No 27
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=29.94 E-value=3.1e+02 Score=22.45 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=53.3
Q ss_pred CceEEEeCC-cceee-EEEeecCCCeEEEEEEeCCCCCCcceEEEEeCCC----cceeeeeeeeecCC---eEEEEEEEE
Q 017636 85 GVHAIRLGN-EASIS-QTITVKPGALYALTFGASRTCAQDEVLRVSVPPQ----SGDLPLQTLYDING---DTYAWGFRA 155 (368)
Q Consensus 85 G~~AV~LG~-easI~-Q~~~t~~G~~Y~LTFsaar~ca~~~~l~Vsv~~~----s~~~~~qt~y~s~g---~~~s~~F~A 155 (368)
|.+.+.... -+.|. ..+.+..+-.|.|++.++..-.. -.+++.+++. ...+++..++.-.. .+..+...+
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~ 99 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG-GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPA 99 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS-EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEES
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC-cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCC
Confidence 556666622 23333 34889999999999887544332 6788999882 24444422222111 223445555
Q ss_pred ccceEEEEEECCCCCCCCCcceeeeccccc
Q 017636 156 KTNIVTVTFHNPGVQEDPACGPLIDAVAIK 185 (368)
Q Consensus 156 ~~~~t~L~F~s~~~~~~~~CGPvID~VaV~ 185 (368)
-....+|+|.+.. .|.+=||.+.+.
T Consensus 100 G~h~i~l~~~~~~-----~~~~niD~~~f~ 124 (125)
T PF03422_consen 100 GKHTIYLVFNGGD-----GWAFNIDYFQFT 124 (125)
T ss_dssp EEEEEEEEESSSS-----SB-EEEEEEEEE
T ss_pred CeeEEEEEEECCC-----CceEEeEEEEEE
Confidence 4444455554421 177889988764
No 28
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=26.08 E-value=1.8e+02 Score=27.00 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=13.8
Q ss_pred CCCCCcEEeeeEEEEeCC
Q 017636 55 HALPKWEINGFVEFIAGG 72 (368)
Q Consensus 55 s~IpgW~i~G~VeyI~sg 72 (368)
..|..|.++|.+-|+...
T Consensus 43 ~~~~~w~~~Gria~~~~~ 60 (202)
T TIGR00548 43 SELDAYQIDGKVGYISPR 60 (202)
T ss_pred hhhhccEeeeeEEEECCC
Confidence 468999999987777543
No 29
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=26.06 E-value=5.7e+02 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.7
Q ss_pred EEEeecCCCeEEEEEEe
Q 017636 99 QTITVKPGALYALTFGA 115 (368)
Q Consensus 99 Q~~~t~~G~~Y~LTFsa 115 (368)
..|...+|+.|+|+-.+
T Consensus 92 ~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 92 NSFRGRPGRTYRLEVET 108 (298)
T ss_pred ccccccCCCEEEEEEEE
Confidence 45678999999999998
No 30
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=24.30 E-value=2.1e+02 Score=27.53 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=16.3
Q ss_pred CCCCCCcEEeeeEEEEeCCC
Q 017636 54 KHALPKWEINGFVEFIAGGP 73 (368)
Q Consensus 54 ~s~IpgW~i~G~VeyI~sg~ 73 (368)
-..|+.|...|.+-||.-.+
T Consensus 46 l~~i~~yq~~G~~~yis~~q 65 (206)
T COG3017 46 LQEIQSYQARGRLAYISDQQ 65 (206)
T ss_pred HHhhhhheecceEEEEcCCC
Confidence 34799999999999996543
No 31
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=24.18 E-value=1e+02 Score=25.54 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=33.9
Q ss_pred eeeEee-cCCccCCCCceeEEe-ccCCcc-----eeeEEEEccCCCeEEEEEEeccCC
Q 017636 240 AVKFID-AKHFNVPYGHAAVEL-VAGRES-----AIAQILRTVPNKEYNLTFTIGDAK 290 (368)
Q Consensus 240 aV~yid-~~h~~vp~G~~aveL-~~g~e~-----aI~Q~v~T~~G~~Y~lsF~~gda~ 290 (368)
.+.|=+ +.+..+|.|.+.|++ -+|... .+...+.-.+|+.|+|- .+|.++
T Consensus 28 ~v~y~~~s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~-~~g~~~ 84 (122)
T PF14344_consen 28 NVAYGQASDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLF-AVGTAA 84 (122)
T ss_pred cCCCCcccCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEE-EECCCC
Confidence 444442 346788999999999 344441 45677888899999984 445544
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.44 E-value=4.7e+02 Score=21.93 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=35.3
Q ss_pred cCCCeEEEEEEeccCCCCCCcceEEEEEeCCCceeeEEEeCCCCCcEEEEEEEEEcccceEEEEEEe
Q 017636 275 VPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFESKGKGGFKSASLKFKAIAARTRITFFST 341 (368)
Q Consensus 275 ~~G~~Y~lsF~~gda~n~c~g~~~v~a~ag~~~~~~~~~s~G~gg~~~~~~~F~A~~~~Trv~F~S~ 341 (368)
.+|-.|++.+.- ..+..+.....+....-...+.+++... +.-.+..++|.+....|||++.-.
T Consensus 44 ~~GG~~~~~~~~-~~g~~~~~~g~v~e~~p~~~l~~t~~~~--~~~~~v~~~~~~~~~gT~ltl~~~ 107 (139)
T cd08894 44 RPGGRWRFVMHG-PDGTDYPNRIVFLEIEPPERIVYDHGSG--PPRFRLTVTFEEQGGKTRLTWRQV 107 (139)
T ss_pred cCCCEEEEEEEC-CCCCEecceEEEEEEcCCCEEEEEeccC--CCcEEEEEEEEECCCCEEEEEEEE
Confidence 356666665531 1122222223444444444444443322 334567899999999999999875
No 33
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=21.85 E-value=5.2e+02 Score=24.95 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=62.2
Q ss_pred CceeecCCCceEEEe----CCcceeeEEEeecCCCeEEEEEEeCCCCCCcceEEEEeCCCcceeeeeeeeecC---C--e
Q 017636 77 GMFFPVSHGVHAIRL----GNEASISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDIN---G--D 147 (368)
Q Consensus 77 ~m~~~vPeG~~AV~L----G~easI~Q~~~t~~G~~Y~LTFsaar~ca~~~~l~Vsv~~~s~~~~~qt~y~s~---g--~ 147 (368)
|++|.+..|. -||- .++.....+|.|. |+.++|.|+.+.++ .+.++...+.. . -
T Consensus 29 d~Lfva~~g~-~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDY---------------lvTlE~k~~~~~~~fvR~ 91 (215)
T PF14761_consen 29 DALFVAASGC-KVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDY---------------LVTLEEKNKRSPVDFVRA 91 (215)
T ss_pred ceEEEEcCCC-EEEEEEcccCCCceeEEEcch-hheeEEEeccccce---------------EEEEEeecCCccceEEEE
Confidence 6777764444 3554 5778899999988 99999999865333 23344444444 2 2
Q ss_pred EEEEEEE-EccceEEEEEECCCCCCCCCcceeeecccccccCCCC
Q 017636 148 TYAWGFR-AKTNIVTVTFHNPGVQEDPACGPLIDAVAIKELYPPM 191 (368)
Q Consensus 148 ~~s~~F~-A~~~~t~L~F~s~~~~~~~~CGPvID~VaV~~l~~p~ 191 (368)
-..|... ....++++.....-+ +.+..++.-|...|.++|..+
T Consensus 92 Y~NWr~~~~~~~~v~vRiaG~~v-~~~~~~~~~~qleiiElPl~~ 135 (215)
T PF14761_consen 92 YFNWRSQKEENSPVRVRIAGHRV-TPSFNESSKDQLEIIELPLSE 135 (215)
T ss_pred EEEhhhhcccCCcEEEEEccccc-ccCCCCccccceEEEEecCCC
Confidence 2245444 566777776665222 356778888888888887653
No 34
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=21.57 E-value=5.9e+02 Score=22.78 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=40.3
Q ss_pred ceeeEEEEccCCCeEEEEEEeccCCCCC-CcceEEEEEe-CCCceeeE--EEe--CC-------------CCCcEEEEEE
Q 017636 266 SAIAQILRTVPNKEYNLTFTIGDAKNGC-HGSMRVEAFA-GKDTVAVP--FES--KG-------------KGGFKSASLK 326 (368)
Q Consensus 266 ~aI~Q~v~T~~G~~Y~lsF~~gda~n~c-~g~~~v~a~a-g~~~~~~~--~~s--~G-------------~gg~~~~~~~ 326 (368)
.-|...+ +|. .+|+|-+......+ .....|.+.- |.+.-+|. ++. .. .+-|+...+.
T Consensus 64 WLISP~l---~g~-~~i~f~v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~ 139 (167)
T PF07675_consen 64 WLISPQL---SGA-QTISFWVKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVD 139 (167)
T ss_dssp EEE-S-----TT--EEEEEEEEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEE
T ss_pred eEEecCc---CCC-CEEEEEEEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEe
Confidence 4444445 775 69999997655443 3455666543 44443443 111 11 2569999999
Q ss_pred EEEcccceEEEEEEeeceeccCCCCCcccceeeeeEE
Q 017636 327 FKAIAARTRITFFSTYYHTKINDFGSLCGPVLDEVRV 363 (368)
Q Consensus 327 F~A~~~~Trv~F~S~~~~~~~d~~~~~cGpviDdV~v 363 (368)
..+-.. -|.|.- ++..|. ..=.||||+|
T Consensus 140 Lp~gt~--Y~afrh---~~~td~----~~l~iDDV~v 167 (167)
T PF07675_consen 140 LPAGTK--YFAFRH---YNSTDA----FYLMIDDVTV 167 (167)
T ss_dssp E-TT----EEEEEE---ES--SS-----EEEEEEEEE
T ss_pred CCCCCc--EEEEEe---ccCCCc----eEEEeccEEC
Confidence 976555 555542 233452 3457999987
No 35
>PF13991 BssS: BssS protein family
Probab=21.17 E-value=1e+02 Score=25.00 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCCCcEEeeeEEEEeCCCCCCCceeecCCCceEEEeCCcceeeEEE-eecCCCeEEEEEEeC
Q 017636 56 ALPKWEINGFVEFIAGGPQPGGMFFPVSHGVHAIRLGNEASISQTI-TVKPGALYALTFGAS 116 (368)
Q Consensus 56 ~IpgW~i~G~VeyI~sg~~~g~m~~~vPeG~~AV~LG~easI~Q~~-~t~~G~~Y~LTFsaa 116 (368)
|+.||.|+= |. -.++-.+||.--.+-.|.. ...+|++|-||=.++
T Consensus 2 Pv~GW~i~p-v~---------------~~dal~lrl~yls~~~q~~e~a~~~~~~~lT~e~A 47 (73)
T PF13991_consen 2 PVTGWDIGP-VD---------------SYDALMLRLHYLSSPDQPPEEAQVGRTYWLTTEMA 47 (73)
T ss_pred Ccccceecc-cc---------------ccceeEEEecccCCCCCCccccccCceeEecHHHH
Confidence 788999862 21 1355567775434445555 477899999986654
No 36
>PRK02710 plastocyanin; Provisional
Probab=20.98 E-value=4.7e+02 Score=22.07 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.1
Q ss_pred EeecCCCeEEEEEEe
Q 017636 101 ITVKPGALYALTFGA 115 (368)
Q Consensus 101 ~~t~~G~~Y~LTFsa 115 (368)
+...+|..|+++|..
T Consensus 82 ~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 82 LAFAPGESWEETFSE 96 (119)
T ss_pred cccCCCCEEEEEecC
Confidence 346789999999985
No 37
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.92 E-value=5.5e+02 Score=24.09 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=9.5
Q ss_pred ecCCCCCCcEEe
Q 017636 52 VGKHALPKWEIN 63 (368)
Q Consensus 52 ~g~s~IpgW~i~ 63 (368)
.-.-++|||+++
T Consensus 67 ~kp~PkpGW~le 78 (178)
T COG4549 67 AKPQPKPGWTLE 78 (178)
T ss_pred ecccCCCCcEEE
Confidence 456789999985
No 38
>PRK15252 putative fimbrial-like adhesin protein StcD; Provisional
Probab=20.36 E-value=6.7e+02 Score=25.95 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=51.0
Q ss_pred ccccCCccCCCCCCCCCCCCCcceEEecCCCCCCcEEeeeEEEEeCCCCCCCceeecCCCceEEEeC----CcceeeEEE
Q 017636 26 KYFEGYLPNGDFEELPKPTNLKKTVLVGKHALPKWEINGFVEFIAGGPQPGGMFFPVSHGVHAIRLG----NEASISQTI 101 (368)
Q Consensus 26 a~~~nLL~NG~FE~gP~~~~~~gt~~~g~s~IpgW~i~G~VeyI~sg~~~g~m~~~vPeG~~AV~LG----~easI~Q~~ 101 (368)
...++++...+|-..+.......+...|.+ =+-.+. | +..++-+.+...+.|++-|+|- ....| ++
T Consensus 27 t~~~~~i~~~~l~~~~~~s~~~~~~f~gt~----Cs~~~~---v-t~~~~~~~ivGf~~~k~~l~~~it~~~~n~i--~l 96 (344)
T PRK15252 27 SVQHNLVVQGDFALNQTQSATYEHNFNDSS----CVSTNT---I-TPMSPSDIIVGLYNDTIKLNLHFEWTNKNNI--TL 96 (344)
T ss_pred ccccCceeecccccCCcceeEEEeeccCCc----ccCCCc---c-CCCCCccEEEEecCCeEEEEEEEEecCCCce--ec
Confidence 356788888888776544211111111110 001112 2 4445667778889999999992 22333 22
Q ss_pred eecCC---CeEEEEEEeCCCCCCcceEEEEeCC
Q 017636 102 TVKPG---ALYALTFGASRTCAQDEVLRVSVPP 131 (368)
Q Consensus 102 ~t~~G---~~Y~LTFsaar~ca~~~~l~Vsv~~ 131 (368)
.-..| ..|+|+|.....- +.++|++++
T Consensus 97 ~n~~g~~~a~ytv~~t~~~s~---~~v~vsa~~ 126 (344)
T PRK15252 97 SNNQTSFTSGYSVTVTPAASN---AKVNVSAGS 126 (344)
T ss_pred cCCCceEecceEEEEEEccCC---ccEEEecCC
Confidence 11222 2799999985432 378888765
Done!