BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017637
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 162/285 (56%), Gaps = 13/285 (4%)
Query: 61 VPTIDLECLLSEEDTNSQ--LDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLP 118
VPTIDL+ + S+++ + ++ L+ +WG+ L+NHGI + L+E++K EF+ L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 119 IEEKMRY--QRKPGDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLR 174
+EEK +Y + G +GYGS + G L+W D F+ + P +R ++P+ P
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 175 KTLESYVQELQKLSMELLGAMGKALKMDAKEMEEM---FEDGRQSVRMAYYPPCPTPGQV 231
+ Y + L+ L+ ++ A+ L ++ +E+ E+ +++ YYP CP P
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 226
Query: 232 MGLAPHSDASGIT-ILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYR 290
+G+ H+D S +T ILH N V GL++ +G W+ A +PD++++++GD LEI+SNG Y+
Sbjct: 227 LGVEAHTDVSALTFILH--NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 291 SVEHRATVNSVKERISIAFFVSPKFDAQV-GPATSLISPENPPLF 334
S+ HR VN K RIS A F P D V P ++S E+P F
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 162/285 (56%), Gaps = 13/285 (4%)
Query: 61 VPTIDLECLLSEEDTNSQ--LDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLP 118
VPTIDL+ + S+++ + ++ L+ +WG+ L+NHGI + L+E++K EF+ L
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 105
Query: 119 IEEKMRY--QRKPGDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLR 174
+EEK +Y + G +GYGS + G L+W D F+ + P +R ++P+ P
Sbjct: 106 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 165
Query: 175 KTLESYVQELQKLSMELLGAMGKALKMDAKEMEEM---FEDGRQSVRMAYYPPCPTPGQV 231
+ Y + L+ L+ ++ A+ L ++ +E+ E+ +++ YYP CP P
Sbjct: 166 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 225
Query: 232 MGLAPHSDASGIT-ILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYR 290
+G+ H+D S +T ILH N V GL++ +G W+ A +PD++++++GD LEI+SNG Y+
Sbjct: 226 LGVEAHTDVSALTFILH--NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 283
Query: 291 SVEHRATVNSVKERISIAFFVSPKFDAQV-GPATSLISPENPPLF 334
S+ HR VN K RIS A F P D V P ++S E+P F
Sbjct: 284 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 158/285 (55%), Gaps = 13/285 (4%)
Query: 61 VPTIDLECLLSEEDTNSQ--LDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLP 118
VPTIDL+ + S+++ + ++ L+ +WG+ L+NHGI + L E++K EF+ L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLS 106
Query: 119 IEEKMRY--QRKPGDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLR 174
+EEK +Y + G +GYGS + G L+W D F+ + P +R ++P+ P
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 175 KTLESYVQELQKLSMELLGAMGKALKMDAKEMEEM---FEDGRQSVRMAYYPPCPTPGQV 231
+ Y + L+ L+ ++ A+ L ++ +E+ E+ ++ YYP CP P
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELA 226
Query: 232 MGLAPHSDASGIT-ILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYR 290
+G+ H+D S +T ILH N V GL++ +G W+ A +PD+++ ++GD LEI+SNG Y+
Sbjct: 227 LGVEAHTDVSALTFILH--NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYK 284
Query: 291 SVEHRATVNSVKERISIAFFVSPKFDAQV-GPATSLISPENPPLF 334
S+ HR VN K RIS A F P D V P +S E+P F
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 138/279 (49%), Gaps = 11/279 (3%)
Query: 82 LRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGS 141
++ C+ WG F+LVNHGI + + ++ YK E++ + EG V
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG---VQAE 80
Query: 142 DGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKM 201
DW F+ P+ P+L R+ + + L+KL+ ELL + + L +
Sbjct: 81 VTDXDWESTFFLKHLPISNISE--VPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGL 138
Query: 202 DAKEMEEMFEDGRQ---SVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIK 258
+ ++ F + +++ YPPCP P + GL H+DA GI +L Q + V GL++
Sbjct: 139 EKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL 198
Query: 259 KDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQ 318
KDG WI +++VN+GD LE+++NG Y+SV HR R S+A F +P DA
Sbjct: 199 KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAV 258
Query: 319 VGPATSLI---SPENPPLFIRVGMEEFVKTFFSHKLNEK 354
+ PA +L+ + EN ++ + +++ K + K K
Sbjct: 259 IYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 126/279 (45%), Gaps = 20/279 (7%)
Query: 70 LSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKP 129
L +D L A + +G L ++ + + ++ F+ LP+E K +Y
Sbjct: 14 LYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVK 73
Query: 130 GDAEGY-----GSVAGSDGILDWGDRFYTVTN--PLHQRKSH----LFPELPPSLRKTLE 178
G A GY + G+D D + ++ + P H+ ++H ++P P+ + +
Sbjct: 74 GGARGYIPFGVETAKGADH-YDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVS 132
Query: 179 SYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHS 238
L ++L A+ LK++ + +DG +R+ +YPP P + H
Sbjct: 133 WLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHG 192
Query: 239 DASGITILHQVNGVDGLEI-KKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRAT 297
D + IT+L GLE+ +DG W+P + P L++N+GD LE ++N V S HR
Sbjct: 193 DINTITLLLGAE-EGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-V 250
Query: 298 VNSVKERISIAFFVSPKF-----DAQVGPATSLISPENP 331
VN ER + + +P F D ++ + ++ ENP
Sbjct: 251 VNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENP 289
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 86 CKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGIL 145
+E G L NH I L+E++ + F+ + + + R+ D S++ +
Sbjct: 22 LRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASISETA--- 78
Query: 146 DWGDRFYTVTNPLHQRKSHLFP--ELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDA 203
+ +TV + + H++P +P SLR + +Y ++ L+ ELL + +
Sbjct: 79 ----KGHTVKDI--KEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEI 132
Query: 204 KEM------EEMFEDGRQSVRMAYYPPCPTPGQVMGL--APHSDASGITILHQVNGVDGL 255
K E + + +R+ +YPP + + A H D + IT+L N GL
Sbjct: 133 KAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGL 191
Query: 256 EIK-KDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRAT----VNSVKERISIAFF 310
++K KDG W+ +++N+GD L+ S+G + S HR + K RIS+ F
Sbjct: 192 QVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
Query: 311 VSP 313
+ P
Sbjct: 252 LHP 254
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 39/294 (13%)
Query: 61 VPTIDLECLLSEEDTNSQ--LDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFY-KL 117
VP ID+ L ++ + A ++ G F VNHGI +++L EF+ +
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSI 65
Query: 118 PIEEKM-----RYQRKPGD---AEGYGSVAGSDGI--LDWGDRFYTVTNPLHQRKS---- 163
EEK Y ++ D A Y S+ G + + + +T +P Q K+
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 164 -HLFPELP--PSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMF--EDGRQSVR 218
+++P+ P + E Y ++ LS LL AL + F +D SV
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 219 MAYYP---PCP-------TPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHI 268
+ YP P P G + H D S IT+L+Q N V L+++ +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEA 244
Query: 269 LPDALLVNVGDILEIMSNGVYRSVEHRAT-VNSVKERISIAFFVSPKFDAQVGP 321
L+N G + ++N Y++ HR VN+ ER S+ FFV+ +D+ + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 124/294 (42%), Gaps = 39/294 (13%)
Query: 61 VPTIDLECLLSEEDTNSQ--LDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFY-KL 117
VP ID+ L ++ + A ++ G F VNHGI +++L EF+ +
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEFHMSI 65
Query: 118 PIEEKM-----RYQRKPGD---AEGYGSVAGSDGI--LDWGDRFYTVTNPLHQRKS---- 163
EEK Y ++ D A Y S+ G + + + +T +P Q K+
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 164 -HLFPELP--PSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMF--EDGRQSVR 218
+++P+ P + E Y ++ LS LL AL + F +D SV
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 219 MAYYP---PCP-------TPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHI 268
+ YP P P G + H D S IT+L+Q N V L+++ +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEA 244
Query: 269 LPDALLVNVGDILEIMSNGVYRSVEHRAT-VNSVKERISIAFFVSPKFDAQVGP 321
L+N G + ++N Y++ HR VN+ ER S+ FFV+ +D+ + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 105/278 (37%), Gaps = 34/278 (12%)
Query: 61 VPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIE 120
VPT L +E D R ++ G+F L + G+ + L+ K +++F++ E
Sbjct: 5 VPTFSL----AELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSE 60
Query: 121 EKMRYQRKPG----------DAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELP 170
+ R P ++E + + D+ + T +LFP
Sbjct: 61 AEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNLFPS-- 112
Query: 171 PSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCP---- 226
+ Y S + + +A + E F D +R Y+P P
Sbjct: 113 GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRS 172
Query: 227 TPGQVMGLAPHSDASGITILHQV---NGVDGLEIKKDGVWIPAHILPDALLVNVGDILEI 283
Q + +APH D S +T++ Q NG L+ + G + PDA+LV G I +
Sbjct: 173 AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATL 232
Query: 284 MSNGVYRSVEH-----RATVNSVKERISIAFFVSPKFD 316
++ G ++ H R + R S FF+ P D
Sbjct: 233 VTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 105/278 (37%), Gaps = 34/278 (12%)
Query: 61 VPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIE 120
VPT L +E D R ++ G+F L + G+ + L+ K +++F++ E
Sbjct: 5 VPTFSL----AELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSE 60
Query: 121 EKMRYQRKPG----------DAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELP 170
+ R P ++E + + D+ + T +LFP
Sbjct: 61 AEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNLFPS-- 112
Query: 171 PSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCP---- 226
+ Y S + + +A + E F D +R Y+P P
Sbjct: 113 GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRS 172
Query: 227 TPGQVMGLAPHSDASGITILHQV---NGVDGLEIKKDGVWIPAHILPDALLVNVGDILEI 283
Q + +APH D S +T++ Q NG L+ + G + PDA+LV G I +
Sbjct: 173 AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATL 232
Query: 284 MSNGVYRSVEH-----RATVNSVKERISIAFFVSPKFD 316
++ G ++ H R + R S FF+ P D
Sbjct: 233 VTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 105/278 (37%), Gaps = 34/278 (12%)
Query: 61 VPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIE 120
VPT L +E D R ++ G+F L + G+ + L+ K +++F++ E
Sbjct: 5 VPTFSL----AELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSE 60
Query: 121 EKMRYQRKPG----------DAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELP 170
+ R P ++E + + D+ + T +LFP
Sbjct: 61 AEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNLFPS-- 112
Query: 171 PSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCP---- 226
+ Y S + + +A + E F D +R Y+P P
Sbjct: 113 GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRS 172
Query: 227 TPGQVMGLAPHSDASGITILHQV---NGVDGLEIKKDGVWIPAHILPDALLVNVGDILEI 283
Q + +APH D S +T++ Q NG L+ + G + PDA+LV G I +
Sbjct: 173 AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATL 232
Query: 284 MSNGVYRSVEH-----RATVNSVKERISIAFFVSPKFD 316
++ G ++ H R + R S FF+ P D
Sbjct: 233 VTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 105/278 (37%), Gaps = 34/278 (12%)
Query: 61 VPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIE 120
VPT L +E D R ++ G+F L + G+ + L+ K +++F++ E
Sbjct: 25 VPTFSL----AELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSE 80
Query: 121 EKMRYQRKPG----------DAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELP 170
+ R P ++E + + D+ + T +LFP
Sbjct: 81 AEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNLFPS-- 132
Query: 171 PSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCP---- 226
+ Y S + + +A + E F D +R Y+P P
Sbjct: 133 GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRS 192
Query: 227 TPGQVMGLAPHSDASGITILHQV---NGVDGLEIKKDGVWIPAHILPDALLVNVGDILEI 283
Q + +APH D S +T++ Q NG L+ + G + PDA+LV G I +
Sbjct: 193 AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATL 252
Query: 284 MSNGVYRSVEH-----RATVNSVKERISIAFFVSPKFD 316
++ G ++ H R + R S FF+ P D
Sbjct: 253 VTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 105/278 (37%), Gaps = 34/278 (12%)
Query: 61 VPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIE 120
VPT L +E D R ++ G+F L + G+ + L+ K +++F++ E
Sbjct: 5 VPTFSL----AELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSE 60
Query: 121 EKMRYQRKPG----------DAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELP 170
+ R P ++E + + D+ + T +LFP
Sbjct: 61 AEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNLFPS-- 112
Query: 171 PSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCP---- 226
+ Y S + + +A + E F D +R Y+P P
Sbjct: 113 GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRS 172
Query: 227 TPGQVMGLAPHSDASGITILHQV---NGVDGLEIKKDGVWIPAHILPDALLVNVGDILEI 283
Q + +APH D S +T++ Q NG L+ + G + PDA+LV G I +
Sbjct: 173 AEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATL 232
Query: 284 MSNGVYRSVEH-----RATVNSVKERISIAFFVSPKFD 316
++ G ++ H R + + S FF+ P D
Sbjct: 233 VTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From
Archaeoglobus Fulgidus
Length = 256
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 220 AYYPPCPTPGQVMGLA----PHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLV 275
A P P + M +A P I+ L+ GV E ++DG WI +P +
Sbjct: 174 ALKPILPLKFEEMEIAIKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVMRIPSGMYG 233
Query: 276 NVGDILEIMSNG 287
++ D+L ++ G
Sbjct: 234 DLMDLLGKVAKG 245
>pdb|2BOE|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca
pdb|2BOF|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Cellotetrose
pdb|2BOG|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Methyl
Cellobiosyl- 4-Thio-Beta-Cellobioside
Length = 286
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 116 KLPIEEKMRYQRKPGDAEGYGSVAGS---DGILDWGDRFYTVTNPLHQRKSHLFPELPPS 172
K+PI + PG G S G+ W D F L R +++ E P
Sbjct: 66 KIPI---LVVSNAPGRDCGNHSSGGAPSHSAYRSWIDEFAA---GLKNRPAYIIVE--PD 117
Query: 173 LRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQS 216
L + S +Q +Q+ +E + GKALK + + F+ G +
Sbjct: 118 LISLMSSCMQHVQQEVLETMAYAGKALKAGSSQARIYFDAGHSA 161
>pdb|2BOD|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a From
Thermobifida Fusca In Complex With Methyl Cellobiosyl-4-
Thio-Beta-Cellobioside
pdb|1TML|A Chain A, Crystal Structure Of The Catalytic Domain Of A
Thermophilic Endocellulase
Length = 286
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 147 WGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEM 206
W D F L R +++ E P L + S +Q +Q+ +E + GKALK + +
Sbjct: 97 WIDEFAA---GLKNRPAYIIVE--PDLISLMSSCMQHVQQEVLETMAYAGKALKAGSSQA 151
Query: 207 EEMFEDGRQS 216
F+ G +
Sbjct: 152 RIYFDAGHSA 161
>pdb|4DQ8|A Chain A, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
pdb|4DQ8|B Chain B, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
Length = 391
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 83 RAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSD 142
R + W I + HG E + EF PI + + G+ +VAG
Sbjct: 159 RELADVWKIRRYGFHGTSH---EYVSQQAAEFLGKPIGDLNQIVLHLGNGASASAVAGGR 215
Query: 143 GILDWGDRFYTVTNPLH-----QRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGK 197
+ PL R L P + L +T + V E++ + G +G
Sbjct: 216 PV-----ETSMGLTPLEGLVMGTRSGDLDPGVIGYLWRTAKLGVDEIESMLNHRSGMLGL 270
Query: 198 ALKMDAKEMEEMFEDGRQSVRMAY 221
A + D + + M +DG + +AY
Sbjct: 271 AGERDFRRLRAMIDDGDPAAELAY 294
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome
Protein Orthologue From Archaeoglobus Fulgidus
Length = 240
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 232 MGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNG 287
+ + P I+ L+ GV E ++DG WI +P ++ D+L ++ G
Sbjct: 174 IKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVXRIPSGXYGDLXDLLGKVAKG 229
>pdb|3L9T|A Chain A, The Crystal Structure Of Smu.31 From Streptococcus Mutans
Ua159
Length = 240
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 139 AGSDGILDWGDRFYTVTNPLH--QRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMG 196
A ++G+ W +R Y NP +R + L ++ +RK++ + ++++ K +L+
Sbjct: 158 AATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217
Query: 197 KALKMDAKEMEEMFE 211
K K+++KE+ ++++
Sbjct: 218 KNWKLESKEINQVYK 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,082,200
Number of Sequences: 62578
Number of extensions: 472510
Number of successful extensions: 1213
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 26
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)