Query 017638
Match_columns 368
No_of_seqs 303 out of 2012
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 3.2E-58 1.1E-62 440.8 31.2 366 1-367 1-373 (529)
2 4b8j_A Importin subunit alpha- 100.0 1.4E-52 4.9E-57 402.4 31.1 365 1-367 3-367 (528)
3 1wa5_B Importin alpha subunit; 100.0 3E-48 1E-52 372.4 25.0 357 7-367 12-379 (530)
4 3ul1_B Importin subunit alpha- 100.0 6.6E-46 2.3E-50 353.6 31.0 336 29-367 14-354 (510)
5 3ul1_B Importin subunit alpha- 100.0 1.5E-36 5.2E-41 289.1 25.1 290 74-367 100-397 (510)
6 3tpo_A Importin subunit alpha- 100.0 3.4E-36 1.2E-40 288.1 27.3 290 74-367 119-416 (529)
7 2jdq_A Importin alpha-1 subuni 100.0 6.4E-35 2.2E-39 274.0 33.8 291 76-367 22-314 (450)
8 3nmw_A APC variant protein; AR 100.0 1.3E-35 4.4E-40 267.3 20.5 276 88-366 46-342 (354)
9 3now_A UNC-45 protein, SD10334 100.0 2E-35 6.7E-40 288.4 20.6 287 75-368 378-704 (810)
10 3nmz_A APC variant protein; pr 100.0 1.7E-34 5.9E-39 267.4 23.2 255 107-362 179-454 (458)
11 3now_A UNC-45 protein, SD10334 100.0 4E-34 1.4E-38 279.2 22.2 290 74-367 421-746 (810)
12 1xm9_A Plakophilin 1; armadill 100.0 2.2E-34 7.6E-39 270.2 19.6 280 75-360 3-362 (457)
13 3nmz_A APC variant protein; pr 100.0 4.9E-34 1.7E-38 264.3 20.6 289 71-367 29-375 (458)
14 2jdq_A Importin alpha-1 subuni 100.0 3.7E-33 1.3E-37 262.0 24.8 289 74-367 64-357 (450)
15 4b8j_A Importin subunit alpha- 100.0 4.9E-33 1.7E-37 266.6 25.7 289 74-367 117-410 (528)
16 1wa5_B Importin alpha subunit; 100.0 6.9E-33 2.4E-37 265.7 26.7 290 74-367 130-424 (530)
17 1xm9_A Plakophilin 1; armadill 100.0 2.1E-32 7E-37 256.9 23.1 281 73-360 43-451 (457)
18 4hxt_A De novo protein OR329; 100.0 1.3E-31 4.5E-36 231.7 23.8 242 117-361 2-244 (252)
19 3l6x_A Catenin delta-1; cateni 100.0 9.1E-31 3.1E-35 247.7 27.3 283 73-359 89-477 (584)
20 4db8_A Armadillo-repeat protei 100.0 1.8E-31 6E-36 231.2 20.6 239 117-358 12-251 (252)
21 3l6x_A Catenin delta-1; cateni 100.0 1.3E-31 4.5E-36 253.4 18.8 282 74-360 48-386 (584)
22 4db8_A Armadillo-repeat protei 100.0 2E-30 6.7E-35 224.7 19.3 239 74-315 12-251 (252)
23 4hxt_A De novo protein OR329; 100.0 8.2E-30 2.8E-34 220.4 23.0 242 74-318 2-244 (252)
24 1jdh_A Beta-catenin; beta-cate 100.0 1.1E-28 3.7E-33 236.4 27.0 284 74-363 101-390 (529)
25 2z6h_A Catenin beta-1, beta-ca 100.0 1.3E-28 4.5E-33 241.2 27.2 284 74-363 98-387 (644)
26 3nmw_A APC variant protein; AR 100.0 1.4E-28 4.7E-33 221.5 19.2 246 73-320 72-339 (354)
27 2z6g_A B-catenin; FULL-length, 100.0 6.2E-27 2.1E-31 233.1 26.9 284 74-363 234-523 (780)
28 1jdh_A Beta-catenin; beta-cate 100.0 1.9E-27 6.4E-32 227.8 21.5 282 74-361 59-342 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 1.7E-26 5.7E-31 226.2 22.1 282 74-361 56-339 (644)
30 4db6_A Armadillo repeat protei 99.9 4E-26 1.4E-30 191.9 19.9 200 114-315 9-209 (210)
31 4db6_A Armadillo repeat protei 99.9 7E-26 2.4E-30 190.4 20.3 199 158-358 10-209 (210)
32 1xqr_A HSPBP1 protein; armadil 99.9 8.8E-26 3E-30 198.0 20.7 226 132-358 54-287 (296)
33 2z6g_A B-catenin; FULL-length, 99.9 4.7E-26 1.6E-30 226.8 21.3 283 74-362 192-476 (780)
34 1xqr_A HSPBP1 protein; armadil 99.9 5.3E-24 1.8E-28 186.7 19.2 239 73-315 27-287 (296)
35 3tt9_A Plakophilin-2; cell adh 99.9 4.5E-24 1.5E-28 179.4 14.6 197 118-316 9-230 (233)
36 3opb_A SWI5-dependent HO expre 99.9 6.4E-23 2.2E-27 196.9 19.6 289 75-367 335-692 (778)
37 3tt9_A Plakophilin-2; cell adh 99.9 9.6E-23 3.3E-27 171.3 11.6 196 75-274 9-230 (233)
38 3opb_A SWI5-dependent HO expre 99.9 6.8E-22 2.3E-26 189.8 18.2 279 74-358 376-728 (778)
39 3grl_A General vesicular trans 99.7 5.2E-16 1.8E-20 145.6 23.5 288 74-362 60-398 (651)
40 3grl_A General vesicular trans 99.7 1.4E-15 4.7E-20 142.8 23.0 286 74-365 21-349 (651)
41 1oyz_A Hypothetical protein YI 99.7 1.4E-15 4.7E-20 133.3 21.2 227 74-358 23-250 (280)
42 4fdd_A Transportin-1; heat rep 99.7 4.5E-16 1.5E-20 157.2 13.2 275 76-360 176-473 (852)
43 1oyz_A Hypothetical protein YI 99.7 6.8E-15 2.3E-19 128.8 19.0 201 114-357 20-220 (280)
44 4fdd_A Transportin-1; heat rep 99.6 1.7E-15 5.7E-20 153.1 15.0 274 75-359 129-430 (852)
45 3ltm_A Alpha-REP4; protein eng 99.6 1.4E-14 4.9E-19 121.2 17.6 189 116-361 18-206 (211)
46 3ltj_A Alpharep-4; protein eng 99.6 3.8E-14 1.3E-18 117.7 17.9 185 116-357 13-197 (201)
47 1ibr_B P95, importin beta-1 su 99.6 1.4E-14 4.6E-19 135.9 16.4 278 75-360 129-439 (462)
48 3ltm_A Alpha-REP4; protein eng 99.6 9.2E-14 3.1E-18 116.3 18.1 188 74-318 19-206 (211)
49 3ltj_A Alpharep-4; protein eng 99.6 3.5E-13 1.2E-17 111.8 20.0 184 74-314 14-197 (201)
50 2vgl_B AP-2 complex subunit be 99.5 4.2E-14 1.4E-18 136.8 13.6 267 76-362 88-386 (591)
51 1b3u_A Protein (protein phosph 99.5 2.3E-13 8E-18 131.4 16.8 267 75-358 282-548 (588)
52 1b3u_A Protein (protein phosph 99.5 6.1E-13 2.1E-17 128.4 19.1 225 76-315 166-392 (588)
53 2vgl_B AP-2 complex subunit be 99.5 1E-12 3.4E-17 127.1 19.3 263 74-362 49-315 (591)
54 1qgr_A Protein (importin beta 99.4 3.5E-12 1.2E-16 129.1 20.0 279 75-361 129-440 (876)
55 1qgr_A Protein (importin beta 99.4 4.5E-12 1.5E-16 128.2 19.6 273 76-359 174-480 (876)
56 1w63_A Adapter-related protein 99.4 9.4E-12 3.2E-16 120.8 19.7 252 75-358 108-379 (618)
57 4gmo_A Putative uncharacterize 99.4 3.3E-12 1.1E-16 125.3 16.4 216 119-358 36-258 (684)
58 2bpt_A Importin beta-1 subunit 99.4 8.1E-12 2.8E-16 126.1 17.7 274 76-359 181-483 (861)
59 2bpt_A Importin beta-1 subunit 99.4 2.7E-12 9.3E-17 129.6 12.9 276 76-360 371-670 (861)
60 1w63_A Adapter-related protein 99.3 4.7E-11 1.6E-15 115.9 19.0 258 74-364 70-348 (618)
61 1ibr_B P95, importin beta-1 su 99.3 7.7E-12 2.6E-16 117.0 13.0 271 77-361 93-398 (462)
62 1u6g_C TIP120 protein, CAND1; 99.3 1.2E-11 4.1E-16 129.6 14.8 274 75-361 7-287 (1230)
63 2vgl_A Adaptor protein complex 99.2 2.9E-09 9.8E-14 103.2 23.3 301 19-358 23-398 (621)
64 2db0_A 253AA long hypothetical 99.1 4.2E-09 1.4E-13 82.1 15.2 185 158-362 30-214 (253)
65 4gmo_A Putative uncharacterize 99.1 1.1E-10 3.7E-15 114.5 6.9 195 74-272 34-257 (684)
66 1u6g_C TIP120 protein, CAND1; 99.1 1.8E-09 6.1E-14 113.3 15.2 275 75-358 87-403 (1230)
67 2db0_A 253AA long hypothetical 99.0 1.2E-07 4.2E-12 74.0 21.3 216 115-358 30-246 (253)
68 4ady_A RPN2, 26S proteasome re 99.0 4.1E-08 1.4E-12 96.8 21.1 240 76-363 431-681 (963)
69 2vgl_A Adaptor protein complex 99.0 4.1E-08 1.4E-12 95.1 20.6 255 76-358 148-433 (621)
70 2qk2_A LP04448P; mini spindles 99.0 7.3E-09 2.5E-13 88.2 13.4 185 78-274 19-206 (242)
71 2qk2_A LP04448P; mini spindles 99.0 3.1E-09 1.1E-13 90.6 10.9 184 120-315 18-205 (242)
72 3tjz_B Coatomer subunit gamma; 98.9 1E-07 3.6E-12 84.7 20.1 252 75-365 69-323 (355)
73 3tjz_B Coatomer subunit gamma; 98.9 3.2E-08 1.1E-12 88.0 15.4 243 75-354 105-349 (355)
74 2qk1_A Protein STU2; STU2P, XM 98.9 1.6E-08 5.5E-13 86.3 12.7 190 122-315 21-220 (249)
75 3b2a_A TON_1937, putative unch 98.9 2.6E-07 8.8E-12 75.3 17.9 187 75-275 34-220 (265)
76 1te4_A Conserved protein MTH18 98.8 6.5E-10 2.2E-14 85.2 1.3 121 116-271 11-131 (131)
77 2qk1_A Protein STU2; STU2P, XM 98.8 6.1E-08 2.1E-12 82.7 13.7 197 164-361 20-225 (249)
78 3b2a_A TON_1937, putative unch 98.8 8.9E-08 3E-12 78.0 13.2 183 160-358 33-218 (265)
79 4ady_A RPN2, 26S proteasome re 98.8 1.2E-06 4.2E-11 86.5 22.1 247 75-361 473-722 (963)
80 1te4_A Conserved protein MTH18 98.7 1.9E-09 6.6E-14 82.5 -0.2 121 159-313 11-131 (131)
81 1ho8_A Vacuolar ATP synthase s 98.6 2.1E-06 7.3E-11 78.1 15.8 233 79-315 172-476 (480)
82 1ho8_A Vacuolar ATP synthase s 98.5 4.7E-06 1.6E-10 75.9 16.8 235 121-359 171-477 (480)
83 2iw3_A Elongation factor 3A; a 98.2 0.00058 2E-08 68.5 24.5 263 75-357 55-323 (986)
84 3dad_A FH1/FH2 domain-containi 98.2 5.1E-05 1.8E-09 65.8 14.3 157 76-235 120-289 (339)
85 2iw3_A Elongation factor 3A; a 98.0 0.00014 4.9E-09 72.8 16.8 271 74-366 14-290 (986)
86 3dad_A FH1/FH2 domain-containi 98.0 0.00019 6.7E-09 62.2 15.5 177 120-298 121-317 (339)
87 1wa5_C Importin alpha RE-expor 98.0 0.00016 5.4E-09 73.9 16.7 221 128-358 416-670 (960)
88 1wa5_C Importin alpha RE-expor 97.9 0.00013 4.4E-09 74.5 14.3 225 85-314 416-669 (960)
89 4ffb_C Protein STU2; tubulin f 97.9 0.00026 8.9E-09 61.2 13.9 191 75-274 11-213 (278)
90 4hat_C Exportin-1; heat repeat 97.8 0.002 7E-08 65.7 21.4 104 256-362 465-573 (1023)
91 3m1i_C Exportin-1; heat repeat 97.7 0.0014 4.7E-08 67.6 18.9 135 222-362 432-573 (1049)
92 2x1g_F Cadmus; transport prote 97.7 0.00028 9.7E-09 72.1 13.2 219 132-358 478-722 (971)
93 2x19_B Importin-13; nuclear tr 97.7 0.0014 4.9E-08 66.8 17.6 219 127-358 459-714 (963)
94 1upk_A MO25 protein; transfera 97.6 0.00076 2.6E-08 58.5 12.7 209 156-367 74-294 (341)
95 3oc3_A Helicase MOT1, MOT1; re 97.6 0.00015 5E-09 66.9 7.7 218 74-314 174-403 (800)
96 4ffb_C Protein STU2; tubulin f 97.5 0.0036 1.2E-07 53.9 15.0 188 122-316 14-213 (278)
97 2of3_A ZYG-9; multifunctional 97.5 0.0017 5.8E-08 55.0 12.1 177 163-358 49-236 (266)
98 2x1g_F Cadmus; transport prote 97.4 0.0031 1E-07 64.5 16.3 169 134-316 437-616 (971)
99 1upk_A MO25 protein; transfera 97.4 0.021 7.2E-07 49.5 18.7 243 111-358 72-332 (341)
100 2of3_A ZYG-9; multifunctional 97.4 0.0011 3.6E-08 56.3 10.5 176 121-315 50-236 (266)
101 3l9t_A Putative uncharacterize 97.3 0.0069 2.4E-07 49.8 13.8 144 119-284 73-218 (240)
102 4hat_C Exportin-1; heat repeat 97.3 0.001 3.6E-08 67.8 10.2 141 172-318 465-621 (1023)
103 3m1i_C Exportin-1; heat repeat 97.2 0.0089 3E-07 61.6 17.2 150 163-317 454-620 (1049)
104 3ibv_A Exportin-T; karyopherin 97.2 0.0017 5.7E-08 66.2 10.7 266 84-358 203-524 (980)
105 1lrv_A LRV, leucine-rich repea 97.2 0.00019 6.4E-09 60.4 3.2 45 289-353 197-241 (244)
106 2x19_B Importin-13; nuclear tr 97.1 0.003 1E-07 64.5 12.2 157 170-336 459-620 (963)
107 3ibv_A Exportin-T; karyopherin 97.1 0.014 4.7E-07 59.5 16.0 224 132-364 457-736 (980)
108 3gjx_A Exportin-1; transport, 96.7 0.16 5.4E-06 52.0 20.6 102 257-363 492-600 (1073)
109 3oc3_A Helicase MOT1, MOT1; re 96.7 0.0059 2E-07 56.5 8.4 214 118-357 175-403 (800)
110 3l9t_A Putative uncharacterize 96.6 0.018 6E-07 47.4 10.0 140 205-367 73-216 (240)
111 3ebb_A Phospholipase A2-activa 96.4 0.12 4E-06 44.9 14.9 173 119-297 105-287 (304)
112 3eg5_B Protein diaphanous homo 96.2 0.55 1.9E-05 42.1 18.5 156 78-235 70-249 (383)
113 3u0r_A Apoptosis inhibitor 5; 96.1 0.037 1.3E-06 50.3 10.5 121 172-312 40-160 (507)
114 3c2g_A SYS-1 protein; beta-cat 96.1 0.11 3.6E-06 45.3 12.5 127 184-312 266-400 (619)
115 2f31_A Diaphanous protein homo 95.9 0.23 7.8E-06 41.3 13.8 140 93-234 20-182 (233)
116 2fv2_A RCD1 required for cell 95.7 0.49 1.7E-05 39.3 14.5 194 76-275 5-226 (268)
117 1lrv_A LRV, leucine-rich repea 95.7 0.0085 2.9E-07 50.3 4.3 46 290-354 174-219 (244)
118 1lsh_A Lipovitellin (LV-1N, LV 95.7 0.66 2.3E-05 47.6 18.6 242 75-358 312-576 (1056)
119 3gjx_A Exportin-1; transport, 95.6 0.44 1.5E-05 48.8 16.7 223 72-316 26-276 (1073)
120 2fv2_A RCD1 required for cell 95.3 0.19 6.7E-06 41.7 10.6 140 92-234 74-226 (268)
121 3ebb_A Phospholipase A2-activa 95.0 0.18 6.3E-06 43.6 10.5 151 76-233 105-264 (304)
122 2bnx_A Diaphanous protein homo 94.7 1.5 5.1E-05 39.3 16.0 141 93-235 24-187 (386)
123 2f31_A Diaphanous protein homo 94.5 1.7 5.7E-05 35.9 14.8 143 150-294 34-207 (233)
124 3c2g_A SYS-1 protein; beta-cat 94.3 0.22 7.5E-06 43.3 8.9 112 141-254 265-377 (619)
125 3eg5_B Protein diaphanous homo 94.3 2 6.7E-05 38.5 15.7 143 150-294 100-273 (383)
126 3a6p_A Exportin-5; exportin-5, 93.7 3.8 0.00013 42.7 18.8 261 75-357 12-330 (1204)
127 3u0r_A Apoptosis inhibitor 5; 93.1 5.2 0.00018 36.6 25.7 255 74-358 29-298 (507)
128 3a6p_A Exportin-5; exportin-5, 92.6 2.5 8.7E-05 44.1 15.5 202 132-358 27-276 (1204)
129 1lsh_A Lipovitellin (LV-1N, LV 92.6 2.1 7.2E-05 44.0 14.5 129 119-276 442-579 (1056)
130 2p8q_B Snurportin-1; heat repe 91.3 0.14 4.9E-06 28.8 2.3 38 11-50 2-40 (40)
131 2bnx_A Diaphanous protein homo 91.1 8.2 0.00028 34.5 16.7 149 151-301 39-218 (386)
132 2npp_B PP2A, B subunit, serine 91.0 7.1 0.00024 35.5 14.6 232 76-321 164-405 (449)
133 3o2t_A Symplekin; heat repeat, 90.9 8.4 0.00029 34.3 22.0 89 89-188 40-128 (386)
134 3gs3_A Symplekin, LD45768P; he 90.5 6.9 0.00024 32.7 21.6 141 76-231 17-172 (257)
135 3fga_B Serine/threonine-protei 90.2 5.3 0.00018 35.7 12.8 228 76-317 131-368 (403)
136 1x5b_A Signal transducing adap 87.2 1.3 4.4E-05 34.4 6.0 74 74-147 52-125 (163)
137 2b6c_A Hypothetical protein EF 86.9 2.9 9.8E-05 34.2 8.3 132 213-367 65-197 (220)
138 3ldz_A STAM-1, signal transduc 86.1 1.1 3.9E-05 33.6 5.0 72 74-147 42-114 (140)
139 3qml_C Protein SLS1, nucleotid 85.9 8.7 0.0003 32.8 10.8 131 136-272 46-188 (315)
140 2npp_B PP2A, B subunit, serine 85.9 15 0.0005 33.5 12.9 193 152-352 154-349 (449)
141 3fga_B Serine/threonine-protei 85.1 16 0.00056 32.6 12.7 79 155-234 124-202 (403)
142 3o2t_A Symplekin; heat repeat, 84.6 8.1 0.00028 34.4 10.5 154 202-363 63-261 (386)
143 1vsy_5 Proteasome activator BL 84.1 0.67 2.3E-05 47.0 3.8 190 161-362 761-970 (997)
144 1mhq_A ADP-ribosylation factor 83.8 2.3 7.9E-05 32.3 5.8 74 74-147 38-116 (148)
145 3qml_C Protein SLS1, nucleotid 83.7 11 0.00037 32.3 10.3 148 75-232 23-189 (315)
146 3g2s_A C-terminal fragment of 83.3 2.6 8.8E-05 32.1 5.9 73 74-147 48-126 (149)
147 2jak_A Serine/threonine-protei 82.8 15 0.00052 32.7 11.5 191 155-353 169-362 (392)
148 3jxy_A Alkylpurine DNA glycosy 80.2 6.5 0.00022 32.3 7.9 138 207-367 65-204 (232)
149 3zyq_A Hepatocyte growth facto 80.2 1.9 6.6E-05 35.4 4.5 74 74-147 45-118 (226)
150 1juq_A ADP-ribosylation factor 78.9 3.3 0.00011 32.3 5.3 75 74-148 50-129 (171)
151 1vsy_5 Proteasome activator BL 77.9 5.9 0.0002 40.3 8.1 186 161-357 134-364 (997)
152 3gae_A Protein DOA1; UFD3, CDC 77.8 8.7 0.0003 32.0 7.9 105 171-275 101-219 (253)
153 1x5b_A Signal transducing adap 76.8 6 0.00021 30.5 6.2 74 161-234 53-127 (163)
154 3pst_A Protein DOA1; protein d 76.0 7.1 0.00024 35.2 7.2 131 135-276 243-392 (425)
155 1dvp_A HRS, hepatocyte growth 75.8 3 0.0001 34.1 4.4 74 74-147 42-115 (220)
156 3l3f_X Protein DOA1, DOA1/UFD3 71.7 7.8 0.00027 34.2 6.3 131 135-276 180-329 (362)
157 3ldz_A STAM-1, signal transduc 70.9 5.8 0.0002 29.7 4.6 94 254-357 19-113 (140)
158 2jak_A Serine/threonine-protei 70.4 10 0.00035 33.8 6.7 72 76-149 176-247 (392)
159 1juq_A ADP-ribosylation factor 70.3 14 0.00047 28.7 6.8 95 254-357 27-127 (171)
160 1mhq_A ADP-ribosylation factor 70.2 12 0.00042 28.2 6.4 95 254-357 15-115 (148)
161 1dvp_A HRS, hepatocyte growth 69.8 8.8 0.0003 31.2 5.9 73 161-233 43-116 (220)
162 3vld_A DNA mismatch repair pro 67.3 76 0.0026 29.1 14.0 143 76-233 75-226 (500)
163 3gs3_A Symplekin, LD45768P; he 64.1 62 0.0021 26.9 14.5 180 175-364 30-249 (257)
164 3zyq_A Hepatocyte growth facto 62.8 9.9 0.00034 31.1 4.9 74 161-234 46-120 (226)
165 3g2s_A C-terminal fragment of 62.7 26 0.0009 26.4 6.9 95 254-357 25-125 (149)
166 1elk_A Target of MYB1; superhe 60.9 17 0.00059 27.7 5.7 74 74-147 53-130 (157)
167 3gjx_B Snurportin-1; transport 60.4 1.6 5.6E-05 37.9 -0.3 44 8-52 28-71 (365)
168 3gae_A Protein DOA1; UFD3, CDC 55.4 35 0.0012 28.3 7.1 133 91-234 71-219 (253)
169 4atg_A TAF6; transcription, TF 51.4 52 0.0018 26.1 7.1 111 161-272 41-161 (196)
170 3pst_A Protein DOA1; protein d 51.1 26 0.00088 31.6 5.8 107 85-196 273-396 (425)
171 1elk_A Target of MYB1; superhe 45.0 66 0.0022 24.4 6.6 95 254-357 30-129 (157)
172 3jxy_A Alkylpurine DNA glycosy 45.0 1.2E+02 0.0042 24.5 10.3 143 163-328 64-208 (232)
173 3l3f_X Protein DOA1, DOA1/UFD3 44.1 26 0.00088 30.8 4.6 105 85-194 210-331 (362)
174 1a92_A Delta antigen; leucine 44.0 22 0.00074 20.7 2.7 19 24-42 11-29 (50)
175 1vsy_4 Proteasome activator BL 42.2 1E+02 0.0034 30.5 9.0 112 161-273 340-455 (799)
176 1t06_A Hypothetical protein; s 41.7 24 0.00082 28.9 3.9 73 288-366 110-188 (235)
177 2b6c_A Hypothetical protein EF 35.3 1.7E+02 0.0058 23.3 13.1 141 120-284 58-199 (220)
178 1sz9_A PCF11 protein; RNA poly 34.4 58 0.002 24.2 4.7 86 258-354 25-110 (144)
179 1vdy_A Hypothetical protein (R 33.2 69 0.0024 23.8 4.8 42 243-284 48-90 (140)
180 3nfq_A Transcription factor IW 32.4 1E+02 0.0035 23.7 5.8 75 279-357 69-150 (170)
181 4atg_A TAF6; transcription, TF 28.1 2.2E+02 0.0075 22.4 11.2 110 203-313 41-160 (196)
182 1vsy_4 Proteasome activator BL 25.3 4.9E+02 0.017 25.6 10.7 100 213-315 349-455 (799)
183 3rru_A TOM1L1 protein; structu 23.5 87 0.003 23.6 4.0 75 74-148 53-131 (152)
184 1vdy_A Hypothetical protein (R 22.8 1.6E+02 0.0055 21.8 5.2 74 74-147 49-130 (140)
185 4flb_A Regulation of nuclear P 22.6 40 0.0014 24.6 1.9 62 246-317 10-71 (132)
186 4fu3_A Regulation of nuclear P 20.9 1.3E+02 0.0046 21.7 4.6 60 246-315 9-68 (135)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.2e-58 Score=440.81 Aligned_cols=366 Identities=51% Similarity=0.804 Sum_probs=286.3
Q ss_pred CCCCCC-cchHHHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHH
Q 017638 1 MSLRPN-ARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA 78 (368)
Q Consensus 1 ~~~~~~-~~~~~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (368)
||-.++ +.+++|+++||+ |++++|+|+||+++.++|||+||||+|+|||+.....++......+...........++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 777766 457899999998 999999999999999999999999999999987543333222111111001111246999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhh
Q 017638 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 158 (368)
Q Consensus 79 l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 158 (368)
+++.++++|++.++.|+..++++++.+.+++++.+++.|++|.|+++|...+++.++.+|+|+|+||+.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999987766999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC
Q 017638 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~ 234 (368)
.|++|.|+.+|.+++..+++.|+|+|+||+.+++.+++.+.+.|++++|+.+|.... ...+++.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995332 3467899999999999987
Q ss_pred -CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017638 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 235 -~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
+........+++|.|+.+|.+++++++.+++|+|++++.++++..+.+++.|+++.|+.+|.++++.++.+|+++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 5566666789999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017638 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+.+++..+..+++.|+++.|..+|.++ ++.++++|||+|+|++++++++++.+
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v 373 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQV 373 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999999999999999999998 99999999999999999999988765
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.4e-52 Score=402.38 Aligned_cols=365 Identities=86% Similarity=1.271 Sum_probs=284.5
Q ss_pred CCCCCCcchHHHHhhcccCCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHH
Q 017638 1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMV 80 (368)
Q Consensus 1 ~~~~~~~~~~~r~~~~k~~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 80 (368)
|++.+++++++|+++||++++++|+|+||+++.++|||+||+|+++|||++....+...+...... .....+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~l~~lv 80 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATG--VDKKLESLPAMI 80 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC------------------------CHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccc--hhhhHHHHHHHH
Confidence 788888899999999999999999999999999999999999999999997433222111100000 112235799999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC
Q 017638 81 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (368)
Q Consensus 81 ~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 160 (368)
+.|.+++++.+..|++.|+++++...+++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|
T Consensus 81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 160 (528)
T 4b8j_A 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (528)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 99999999999999999999998775588899999999999999999876689999999999999998899999999999
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 017638 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 240 (368)
+++.|+.+|.++++.+++.|+|+|+||+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.....
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 240 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999977789999999999999999987777777
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017638 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
...+++|.|+.+|.+++++++..++|+|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus 241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 320 (528)
T 4b8j_A 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ 320 (528)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence 77899999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017638 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 321 ~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
.+.+++.|+++.|+.+|.++.++.++++|+|+|+|++.+++++++.+
T Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999876578999999999999999999887754
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3e-48 Score=372.43 Aligned_cols=357 Identities=54% Similarity=0.808 Sum_probs=305.5
Q ss_pred cchHHHHhhccc-C-CCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccC---CCCC-CCC---CCCcchhhh-hhhccH
Q 017638 7 ARAEVRRNRYKV-A-VDADEGRRRREDNMVEIRKNKREESLLKKRREGLQ---SQQF-PPP---APASNLNLQ-TKLESL 76 (368)
Q Consensus 7 ~~~~~r~~~~k~-~-~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~---~~~~-~~~---~~~~~~~~~-~~~~~i 76 (368)
.+++.|++.||+ + ++++|+|+||++..+++||+||++++.|||+.... .+.. ... ..... .. ...+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i 89 (530)
T 1wa5_B 12 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQ--FYSQLQQEL 89 (530)
T ss_dssp CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC------------------------------CCH
T ss_pred CchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhh--hhhhhHHHH
Confidence 455789999999 8 99999999999999999999999999999998542 1110 000 00000 10 112469
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017638 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
+.+++.|.+++++.+..|+..|+++++...++++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~ 169 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV 169 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999998876567788899999999999999997339999999999999999888889999
Q ss_pred hhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 017638 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-P 235 (368)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~ 235 (368)
++.|+++.|+.+|.++++.+++.|+|+|+||+.+.+.+++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999888999999999999999999 5688999999999999999987 6
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
........+++|.|+.+|.++++.++..++|+|++|+...++....+++.|+++.|+.+|.++++.++..|+++|++++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 66666678999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017638 316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 316 ~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+++...+.+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++++++.+
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~ 379 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAV 379 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998889899999999999999999 89999999999999999999887754
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.6e-46 Score=353.61 Aligned_cols=336 Identities=51% Similarity=0.810 Sum_probs=275.0
Q ss_pred hHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCC
Q 017638 29 REDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSP 108 (368)
Q Consensus 29 r~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~ 108 (368)
|-...++.|+++++....+.++....+++.......+. ....-..++.+++.++|+|++.|+.|+..+|+++|.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p 91 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSN--QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91 (510)
T ss_dssp -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhccc--cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 33456778888887777777765443333211111010 0001146999999999999999999999999999999899
Q ss_pred chHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017638 109 PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188 (368)
Q Consensus 109 ~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla 188 (368)
+++.+++.|+||.|+++|.+++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.++++.|+|+|+||+
T Consensus 92 pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 92 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987766899999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHH
Q 017638 189 GDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTD 263 (368)
Q Consensus 189 ~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~ 263 (368)
.+++.+++.+.+.|++++|+.++.... ...+++.++|++++++.+. +........+++|.|+.++.+++++++..
T Consensus 172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~ 251 (510)
T 3ul1_B 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 251 (510)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999995332 3457889999999999987 55566667899999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCc
Q 017638 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343 (368)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~ 343 (368)
++|+|++|+.++++....+.+.|+++.|+.+|.++++.++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++
T Consensus 252 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~ 330 (510)
T 3ul1_B 252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT 330 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SH
T ss_pred HHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cHHHHHHHHHHHHhcCCHHHhhhc
Q 017638 344 SIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 344 ~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
.++++|+|+|+||+++++++++.+
T Consensus 331 ~v~~~A~~aL~nl~a~~~~~~~~v 354 (510)
T 3ul1_B 331 NIQKEATWTMSNITAGRQDQIQQV 354 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999998765
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.5e-36 Score=289.08 Aligned_cols=290 Identities=27% Similarity=0.447 Sum_probs=258.9
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.+|.|+++|++ +++.+|..|+++|.++++++ ++....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 579999999985 55899999999999998875 677788999999999999999988 999999999999999988999
Q ss_pred hHHHhhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017638 153 TKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 227 (368)
+..+.+.|+++.|+.+|.+++ ..+...++|+|+|++.+...........++++.|+.++ .+++.+++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998754 45788999999999987654445555567899999999 788999999999999
Q ss_pred HHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHH
Q 017638 228 SNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 306 (368)
Q Consensus 228 ~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a 306 (368)
++|+...+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 99998753222 22336899999999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017638 307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM 367 (368)
Q Consensus 307 ~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v 367 (368)
+|+|+||+.+++.+.+.+++.|+++.|+.++.++ ++.+|++|+|+|+|++. ++++++.++
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999997 788887654
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.4e-36 Score=288.14 Aligned_cols=290 Identities=27% Similarity=0.443 Sum_probs=259.8
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.+|.|++.|.+ +++.++..|+++|.+++++. +.....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence 679999999974 56899999999999998764 566778999999999999999998 999999999999999988999
Q ss_pred hHHHhhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017638 153 TKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 227 (368)
+..+++.|+++.|+.+|..++ ..+...++|+|+|++.+...........++++.|+.++ .+++++++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence 999999999999999998654 45788999999999987655445555567899999999 788999999999999
Q ss_pred HHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHH
Q 017638 228 SNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 306 (368)
Q Consensus 228 ~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a 306 (368)
++++.+.+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 99998753222 22337899999999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017638 307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM 367 (368)
Q Consensus 307 ~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v 367 (368)
+|+|+||+.+++.+...+++.|+++.|+.++.++ ++.++++|+|+|+|++. ++++++.++
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999997 788887654
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6.4e-35 Score=274.03 Aligned_cols=291 Identities=62% Similarity=0.968 Sum_probs=267.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhc-CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~-g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
++.+++.++++++..+..|+..|+++++...+++...+++. |++|.|+++|.+++++.++..|+++|++++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88999999999999999999999999875446677778888 99999999999983499999999999999998888888
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++.+.
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999998899999999999999999955578999999999999999876
Q ss_pred -CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017638 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 235 -~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
+........+++|.|+.++.++|+.++..++|+|++++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5555666689999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017638 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 314 ~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+.+++...+.+++.|+++.|..++.++ ++.+++.|+|+|+|++.|++++++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~ 314 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTV 314 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999988888899999999999999998 89999999999999999998887654
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.3e-35 Score=267.27 Aligned_cols=276 Identities=19% Similarity=0.167 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC----------CCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017638 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----------DYPQLQFEAAWALTNIASGTSENTKVVI 157 (368)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 157 (368)
...+..|+++|.++.. + .+..+.+++.|+++.|+.+|..+ .++.++..|+|+|.|++.+++..+..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445589999999954 3 57788899999999999999521 1268999999999999997766777775
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 017638 158 D-HGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK- 234 (368)
Q Consensus 158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~- 234 (368)
. .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+++|..+.+.++++.++++|+||+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 4 46699999999999999999999999999985 66789999999999999998756778899999999999999843
Q ss_pred CCCChhh-hhchHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhcCCCCcchHHHH
Q 017638 235 PQPPFDQ-VRPALPALAQLVHSNDE----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 306 (368)
Q Consensus 235 ~~~~~~~-~~~~~~~L~~lL~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a 306 (368)
....... ..+++|.|+.+|.+.++ +++..++|+|.||+. ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222222 47999999999987654 599999999999997 677888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017638 307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQV 366 (368)
Q Consensus 307 ~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~ 366 (368)
+++|+|++.+++++.+.+.+.|+++.|..+|.++ ++.+++.|+|+|.||+.+++++++.
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 9999999988899999999999999999999998 8999999999999999998887654
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2e-35 Score=288.36 Aligned_cols=287 Identities=15% Similarity=0.133 Sum_probs=246.3
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017638 75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
.++.++++|.++ +++.+..|++.|.++... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence 367788888887 889999999999998542 34444455 6899999999999987 89999999999999986532
Q ss_pred c--------------------------------hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 017638 152 N--------------------------------TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL 199 (368)
Q Consensus 152 ~--------------------------------~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~ 199 (368)
. .+.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|..++
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv 533 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV 533 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 1 26788999999999999999999999999999999986 45899999
Q ss_pred hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCCh--hhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCC
Q 017638 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF--DQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGT 275 (368)
Q Consensus 200 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~ 275 (368)
+.|++++|+.+| .+.+...++.|+|+|++|+.+. |...+ ....+++|.|+.+|.+++ ...+.+|+|+|.||+..+
T Consensus 534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999 6677889999999999999764 22211 123468999999998663 445679999999999998
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017638 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
++..+.+++.|+++.|+.+|.++++.++.+|+++|+||+.+++...+ +.+ .|.++.|+.++.++ +..++++|+|+|+
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa 690 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999997765444 554 68999999999998 8999999999999
Q ss_pred HHhcCCHHHhhhcC
Q 017638 355 NITAGNRDQIQVMI 368 (368)
Q Consensus 355 nl~~~~~~~i~~vi 368 (368)
|+++|+++++++++
T Consensus 691 nLt~~s~~~~~~ii 704 (810)
T 3now_A 691 IITSVSVKCCEKIL 704 (810)
T ss_dssp HHHHHCHHHHHHHH
T ss_pred HHhCCCHHHHHHHH
Confidence 99999999988764
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=267.36 Aligned_cols=255 Identities=20% Similarity=0.179 Sum_probs=221.8
Q ss_pred CCchHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCChHHHHHhhCCCCHH
Q 017638 107 SPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLASPSDD 175 (368)
Q Consensus 107 ~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~ 175 (368)
..+.+.+++.|+++.|+.+|.. ..++.++..|+|+|.|++.+++..+..+.. .|+||.|+.+|.+++++
T Consensus 179 ~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~ 258 (458)
T 3nmz_A 179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHH
Confidence 3445667789999999999952 122679999999999999977667666654 46699999999999999
Q ss_pred HHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHh
Q 017638 176 VREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQ-VRPALPALAQL 252 (368)
Q Consensus 176 v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~L~~l 252 (368)
+++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++.+|+||+... ....... ..+++|.|+.+
T Consensus 259 v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~L 338 (458)
T 3nmz_A 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 338 (458)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHH
Confidence 999999999999985 66789999999999999998757778899999999999999833 2222222 47999999999
Q ss_pred hcCCCH----HHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHH
Q 017638 253 VHSNDE----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII 325 (368)
Q Consensus 253 L~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 325 (368)
|.+.++ +++..++|+|.||+. ..++..+.+++.|+++.|+.+|.+++..++..|+++|+|++.+++++...++
T Consensus 339 L~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~ 418 (458)
T 3nmz_A 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 418 (458)
T ss_dssp TTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 987654 599999999999997 6788888999999999999999999999999999999999988899999999
Q ss_pred HcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017638 326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 326 ~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
+.|+++.|..+|.++ ++.+++.|+|+|.||+.++|.
T Consensus 419 ~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 419 DMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCSC
T ss_pred HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHh
Confidence 999999999999998 999999999999999998765
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=4e-34 Score=279.16 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=246.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCC----------------------------c---hHHHHhcCcHHHH
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSP----------------------------P---IEEVIQSGVVPRF 122 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~----------------------------~---~~~~i~~g~i~~L 122 (368)
+.+|.|+++++++++..++.|++.|.+++.+.+.. . ++.+++.|++|.|
T Consensus 421 g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L 500 (810)
T 3now_A 421 ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL 500 (810)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence 56999999999999999999999999998753111 0 2578899999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhH-HHHHh
Q 017638 123 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCR-DLVLS 200 (368)
Q Consensus 123 v~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~-~~i~~ 200 (368)
+.+|++++ +.+|..|+|+|+||+. +++++..+++.|++|.|+.+|.++++..++.|+|+|+||+.+ ++... .....
T Consensus 501 V~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 501 CALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 99999988 9999999999999997 578999999999999999999999999999999999999864 33210 00012
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHH
Q 017638 201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279 (368)
Q Consensus 201 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~ 279 (368)
.|++++|+.+|..+.+...+..++|+|.||+...+.. ......+++|.|+.+|.++++.++..|+++|+||+.+++..
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~- 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI- 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence 3589999999953334455678999999999875322 22333689999999999999999999999999999876544
Q ss_pred HHHHH-cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017638 280 QAVIE-AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 280 ~~~~~-~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
..+++ .|.++.|+.++.+++..++..|+|+|+|++.+++.+.+.+++ .|+++.|+.+|.++ +..+++.|+|+|+|++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 55554 689999999999999999999999999999988888999999 89999999999999 9999999999999999
Q ss_pred cCCHHHhhhc
Q 017638 358 AGNRDQIQVM 367 (368)
Q Consensus 358 ~~~~~~i~~v 367 (368)
.+++++.+++
T Consensus 737 ~~s~e~~~~l 746 (810)
T 3now_A 737 NAGEEIAKKL 746 (810)
T ss_dssp TTCHHHHHHH
T ss_pred hCCHHHHHHH
Confidence 9888887765
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.2e-34 Score=270.25 Aligned_cols=280 Identities=18% Similarity=0.182 Sum_probs=233.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.++..|.+++++.+..|+++|++++..+ .+....+++.|++|.|+++|++++ +.++..|+|+|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999997542 344558899999999999999988 99999999999999998899999
Q ss_pred HHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc--------c-------cchh
Q 017638 155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------R-------AKLS 218 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~--------~-------~~~~ 218 (368)
.+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.+|.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999998 568888888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhh-h-chHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCC---------------
Q 017638 219 MLRNATWTLSNFCRGKPQPPFDQV-R-PALPALAQLVHS------NDEEVLTDACWALSYLSDGT--------------- 275 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~~~~L~~lL~~------~d~~v~~~a~~~l~~l~~~~--------------- 275 (368)
+++.++|+|+|||.. +....... . |++|.|+.+|.+ .+..++..++++|.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999987 33222222 3 899999999975 46678889999999987320
Q ss_pred -----------------------------------hHHHHHHHHcCChHHHHHhcCC-CCcchHHHHHHHHHHhhcCChH
Q 017638 276 -----------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF 319 (368)
Q Consensus 276 -----------------------------------~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~ 319 (368)
+...+.+.+.|+++.++.+|.+ .++.+++.|+|+|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 1112234456778889999854 4689999999999999987653
Q ss_pred H---H-HHHH-HcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017638 320 Q---T-QCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 320 ~---~-~~~~-~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
. . +.++ +.|++|.|+.+|.++ ++.++++|+|+|+|++.+.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH
Confidence 2 2 3344 689999999999999 9999999999999999853
No 13
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=264.35 Aligned_cols=289 Identities=21% Similarity=0.224 Sum_probs=223.7
Q ss_pred hhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCC-----------HHHHHHH
Q 017638 71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDY-----------PQLQFEA 138 (368)
Q Consensus 71 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~-----------~~v~~~a 138 (368)
.+++.++.++..+.+.++.. .++++++.+.+++. ..+++.|++|.|+++|...+. ++++.+|
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 45677899999999888763 34444444444555 778999999999999997542 7999999
Q ss_pred HHHHHHHhcCCCcchHHHhhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChhh
Q 017638 139 AWALTNIASGTSENTKVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAGDSPRC 194 (368)
Q Consensus 139 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nla~~~~~~ 194 (368)
+|+|+||+.++++......+.|++ +.+++++.+.. .+ +++ +|+|+|+||+.+ +++
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999999999998888888 77777787642 22 545 999999999877 789
Q ss_pred HHHHHhcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhcCCCHHHHH
Q 017638 195 RDLVLSQGALIPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQLVHSNDEEVLT 262 (368)
Q Consensus 195 ~~~i~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~lL~~~d~~v~~ 262 (368)
|+.+.+.|++++|+.+|.. +.+..+++.++|+|.|||.+++...... ..+++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2457899999999999998864222222 356799999999999999999
Q ss_pred HHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhhCC
Q 017638 263 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTH 339 (368)
Q Consensus 263 ~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~g~l~~l~~ll~~ 339 (368)
.++|+|+||+.. +++....+++.|+++.|+.+| .+.++.++..|+++|+||+.++++....+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999985 566778889999999999975 667889999999999999996655555566 78999999999998
Q ss_pred CCCc----cHHHHHHHHHHHHhc---CCHHHhhhc
Q 017638 340 SHKK----SIKKEACWTISNITA---GNRDQIQVM 367 (368)
Q Consensus 340 ~~~~----~v~~~a~~~l~nl~~---~~~~~i~~v 367 (368)
+ ++ .++++|+|+|.|++. +++++.+.|
T Consensus 342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i 375 (458)
T 3nmz_A 342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 375 (458)
T ss_dssp C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 7 43 499999999999997 888887765
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.7e-33 Score=261.98 Aligned_cols=289 Identities=27% Similarity=0.380 Sum_probs=254.9
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.++.|++.+.++ ++..+..|+++|.++.+.. .+....+++.|++|.|+++|.+++ +.++..|+|+|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 4589999999988 8999999999999998754 455667888999999999999987 999999999999999988888
Q ss_pred hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017638 153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
+..+++.|+++.|+.++.+ ++..++..++|+|+|++.+. +.....+. .++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 8999999999999999995 78999999999999999765 43322333 67899999999 677899999999999999
Q ss_pred hcCCCC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017638 231 CRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (368)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 309 (368)
+...+. .......+++|.|+.+|.+++++++..++++|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 986422 2222236899999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC-CHHHhhhc
Q 017638 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQVM 367 (368)
Q Consensus 310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~i~~v 367 (368)
|+|++.+++...+.+++.|+++.|+.+|.++ ++.+|++|+|+|+|++.+ ++++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l 357 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYL 357 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999988888899999999999999998 899999999999999984 78877654
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.9e-33 Score=266.64 Aligned_cols=289 Identities=28% Similarity=0.406 Sum_probs=257.9
Q ss_pred ccHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.++.|++.|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 56999999999887 999999999999998753 566677889999999999999987 999999999999999988888
Q ss_pred hHHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017638 153 TKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
+..+...|+++.|+.+| .+++..++..++|+|+||+...+.. ......|+++.|+.++ .+.+..++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 6788999999999999999876443 3344578999999999 7789999999999999999
Q ss_pred cCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHHHH
Q 017638 232 RGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRT 309 (368)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~ 309 (368)
.+.+... .....+++|.|+.+|.++++.++..|+++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7743221 223368999999999999999999999999999999888888999999999999999888 89999999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017638 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM 367 (368)
Q Consensus 310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v 367 (368)
|+|++.+++.....+++.|+++.|+.+|.++ ++.++++|+|+|+|++. ++++++.++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999888889999999999999999998 89999999999999998 478877654
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=6.9e-33 Score=265.68 Aligned_cols=290 Identities=27% Similarity=0.381 Sum_probs=256.2
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.++.|++.|.++ ++.++..|+++|.++.+.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 5799999999987 8999999999999998753 455677889999999999999887 999999999999999987888
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
+..++..|+++.|+.++.+++..++..++|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999976522234555678999999999 67789999999999999998
Q ss_pred CCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017638 233 GKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (368)
Q Consensus 233 ~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (368)
..+.... ....+++|.|+.+|.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7432212 222589999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCH--HHhhhc
Q 017638 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNR--DQIQVM 367 (368)
Q Consensus 312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~i~~v 367 (368)
+++.+++...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++. +++ ++++++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99998888888899999999999999988 89999999999999998 455 666543
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.1e-32 Score=256.86 Aligned_cols=281 Identities=20% Similarity=0.217 Sum_probs=238.0
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCCCc
Q 017638 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
.+.+|.|+++|.++++..+..|+++|+++...+ +++...+++.|++|.|+++|. +++ ++++..|+|+|+|++.+ ++
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTS-SS
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcC-HH
Confidence 367999999999999999999999999998753 566677889999999999999 666 89999999999999997 78
Q ss_pred chHHHhhCCChHHHHHhh--------CC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHHhccc
Q 017638 152 NTKVVIDHGAVPIFVKLL--------AS--------PSDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAQLNER 214 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL--------~~--------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~-~~i~~l~~~l~~~ 214 (368)
.+..+++ |++|.|+.+| .+ .+..++..|+|+|+||+.+ ++.++.+.+. |++++|+.+|...
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence 8888999 9999999999 32 2466777999999999988 7899999998 9999999887420
Q ss_pred --------------------------------------------------------------------------------
Q 017638 215 -------------------------------------------------------------------------------- 214 (368)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (368)
T Consensus 198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
T 1xm9_A 198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277 (457)
T ss_dssp HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence
Q ss_pred ------------------cchhHHHHHHHHHHHhhcCCCCCC--h--hh--hhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 017638 215 ------------------AKLSMLRNATWTLSNFCRGKPQPP--F--DQ--VRPALPALAQLVHSNDEEVLTDACWALSY 270 (368)
Q Consensus 215 ------------------~~~~~~~~a~~~L~~l~~~~~~~~--~--~~--~~~~~~~L~~lL~~~d~~v~~~a~~~l~~ 270 (368)
.++.+++.++|+|+|||.+..... . .. ..+++|.|+++|.+++.+++..|+|+|+|
T Consensus 278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357 (457)
T ss_dssp GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence 124556678999999998753211 1 12 26899999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhcCCCCc------chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCcc
Q 017638 271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSP------SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS 344 (368)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~------~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~ 344 (368)
++.+. ....++..|+++.|+.+|.+.++ ++...++++++|++.++++....+.+.|+++.|..++.+++++.
T Consensus 358 ls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 358 MSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435 (457)
T ss_dssp HHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred HhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence 99853 33556677899999999987643 57889999999999999989999999999999999999876789
Q ss_pred HHHHHHHHHHHHhcCC
Q 017638 345 IKKEACWTISNITAGN 360 (368)
Q Consensus 345 v~~~a~~~l~nl~~~~ 360 (368)
+++.|+|+|.|+....
T Consensus 436 i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 436 AAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHcch
Confidence 9999999999998643
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=100.00 E-value=1.3e-31 Score=231.73 Aligned_cols=242 Identities=29% Similarity=0.424 Sum_probs=223.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017638 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
|.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.+++..++..++|+|+|++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 67999999999998 99999999999999998778899999999999999999999999999999999999999889999
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017638 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~ 275 (368)
.+.+.|+++.++.++ .+++..++..++|+|.+++...+. .......+++|.|++++.+++++++..++++|++++..+
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 678899999999999999975432 222333689999999999999999999999999999988
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017638 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
++....+++.|+++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999998888899999999999999999998 89999999999999
Q ss_pred HhcCCH
Q 017638 356 ITAGNR 361 (368)
Q Consensus 356 l~~~~~ 361 (368)
++...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 997543
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=9.1e-31 Score=247.68 Aligned_cols=283 Identities=17% Similarity=0.192 Sum_probs=229.9
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
.+.||.|+++|.+++++++..|+++|+++......++...+++.|+||.|+.+|.+..+.+++..|+++|+|++. +++.
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~ 167 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSI 167 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGG
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence 367999999999999999999999999997653356778899999999999999975438999999999999999 5788
Q ss_pred hHHHhhCCChHHHHHhhC------------------CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC-hHHHHHHhcc
Q 017638 153 TKVVIDHGAVPIFVKLLA------------------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA-LIPLLAQLNE 213 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~------------------~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~-i~~l~~~l~~ 213 (368)
+..+++ ++++.|+.++. .++..+++.|+++|.||+.+++..|..+.+.++ +++|+.++..
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 888886 67999999871 235799999999999999988877888877544 4577666532
Q ss_pred -------------------------------------------------------------------------ccchhHH
Q 017638 214 -------------------------------------------------------------------------RAKLSML 220 (368)
Q Consensus 214 -------------------------------------------------------------------------~~~~~~~ 220 (368)
+.++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 1223444
Q ss_pred HHHHHHHHHhhcCCCC-C-Ch-hh--hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017638 221 RNATWTLSNFCRGKPQ-P-PF-DQ--VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (368)
Q Consensus 221 ~~a~~~L~~l~~~~~~-~-~~-~~--~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL 295 (368)
+.++|+|.|||.+... . .. .. ..+++|.|+.+|.+++.+++..++|+|+||+.+.... .++..|+++.|+.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHHHHHHh
Confidence 5555666666554311 0 00 11 1478999999999999999999999999999876533 455789999999999
Q ss_pred CCC--------CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhcC
Q 017638 296 GHP--------SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAG 359 (368)
Q Consensus 296 ~~~--------~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~ 359 (368)
.++ +..++.+|+++|+||+.+++++.+.+++.|+++.|+.++.++ ..+.+++.|+|+|+|++..
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 776 356789999999999999999999999999999999999874 4789999999999999874
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.98 E-value=1.8e-31 Score=231.24 Aligned_cols=239 Identities=36% Similarity=0.560 Sum_probs=219.8
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017638 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
...+.++..|.+++ ++++..|+++|.++.+.+.+.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45899999999998 89999999999887765677888899999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017638 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~ 275 (368)
.+.+.|+++.|+.+| .++++.++..++|+|.+|+...+.. ......+++|.|+.+|.++++.++..++|+|++++.++
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999875433 33344789999999999999999999999999999988
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017638 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
++....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998998999999999999999999998 99999999999999
Q ss_pred Hhc
Q 017638 356 ITA 358 (368)
Q Consensus 356 l~~ 358 (368)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 21
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.98 E-value=1.3e-31 Score=253.41 Aligned_cols=282 Identities=20% Similarity=0.233 Sum_probs=231.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-CCcc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~ 152 (368)
..++.|+++|.+++++.+..|+++|++++... .++...+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 46999999999999999999999999997654 677788999999999999999988 99999999999999985 6899
Q ss_pred hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-----------------cc
Q 017638 153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-----------------ER 214 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-----------------~~ 214 (368)
+..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.. +++++|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6789999999999999985 467777775 57999999872 12
Q ss_pred cchhHHHHHHHHHHHhhcCCCCCCh-h-hhhchHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCChHH--------
Q 017638 215 AKLSMLRNATWTLSNFCRGKPQPPF-D-QVRPALPALAQLVHS------NDEEVLTDACWALSYLSDGTNDK-------- 278 (368)
Q Consensus 215 ~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~~~~~~L~~lL~~------~d~~v~~~a~~~l~~l~~~~~~~-------- 278 (368)
.+..++++++|+|.||+...+.... . ...++++.|+.++++ .+...+..|+|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3579999999999999987533222 2 225778899999864 46789999999999999652111
Q ss_pred -----------------HHHHHHcCChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChH---HHH-HHHHcCChHHHHHh
Q 017638 279 -----------------IQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDF---QTQ-CIITYGALPYLLGL 336 (368)
Q Consensus 279 -----------------~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~---~~~-~~~~~g~l~~l~~l 336 (368)
++.+.+.++++.++.+|. +.++.+++.|+++|.||+.+... ..+ .+.+.|+++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111223345677888884 56789999999999999987632 222 34456889999999
Q ss_pred hCCCCCccHHHHHHHHHHHHhcCC
Q 017638 337 LTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 337 l~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
|.++ +..+++.|+|+|+||+.+.
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDA 386 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTC
T ss_pred HcCC-CHHHHHHHHHHHHHHhCCh
Confidence 9999 8999999999999999854
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=2e-30 Score=224.67 Aligned_cols=239 Identities=37% Similarity=0.572 Sum_probs=217.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
..++.+++.|++++++.+..|++.|+++++. ..+....+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 4589999999999999999999999998886 3677788999999999999999998 9999999999999999889999
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
..+++.|+++.|+.+|.++++.+++.|+|+|+||+.+.+.....+.+.|+++.|+.++ .+++..++..++|+|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998765548899999999999999 777999999999999999987
Q ss_pred CCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 234 KPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 234 ~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
.+... .....+++|.|+.+|.++++.++..++++|++++.++++....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 53222 22337899999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred hhc
Q 017638 313 IVT 315 (368)
Q Consensus 313 l~~ 315 (368)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=8.2e-30 Score=220.42 Aligned_cols=242 Identities=29% Similarity=0.398 Sum_probs=221.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.++.|++.+.+++++.+..|++.|.+++... ......+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 46899999999999999999999999998754 457778899999999999999988 9999999999999999889999
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
..+.+.|+++.|+.+|.++++.++..|+|+|+|++...+..+..+.+.|+++.++.++ .++++.++..++|+|.+|+..
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988888999999999999999999 778899999999999999987
Q ss_pred CCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 234 KPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 234 ~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
.+.. ......+++|.|+.++.++++.++..++++|++++.++++....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5322 223337899999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred hhcCCh
Q 017638 313 IVTGDD 318 (368)
Q Consensus 313 l~~~~~ 318 (368)
++...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 987654
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=1.1e-28 Score=236.38 Aligned_cols=284 Identities=19% Similarity=0.220 Sum_probs=249.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.++.|++.+.++++.++..|++.|.+++... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 57999999999999999999999999998764 455667789999999999999987 8999999999999999888999
Q ss_pred HHHhhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
..+.+.|+++.|+.+|.++ ....+..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..++..++|+|.+|+.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999864 456778899999999975 46788999999999999999 66689999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l 310 (368)
..+.. ....+++|.|++++.+++++++..++|+|++|+.++++....+.+.|+++.|+.+|.+ .++.++.+|+++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 75332 2346899999999999999999999999999999888888999999999999999964 3478999999999
Q ss_pred HHhhcCChH---HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017638 311 GNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 311 ~nl~~~~~~---~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
+|++.+++. ....+.+.|+++.|..+|.++.++.++++|+|+|+|++.++..+
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~ 390 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 390 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh
Confidence 999886543 35578899999999999999833599999999999999876554
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=241.21 Aligned_cols=284 Identities=19% Similarity=0.221 Sum_probs=249.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.++.|++++.++++.++..|+++|.++++.. ......+++.|+++.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 57999999999999999999999999998764 566677889999999999999987 8888888999999998888999
Q ss_pred HHHhhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 154 KVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
..+.+.|+++.|+.+|.+.+ ..+++.++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998754 67889999999999965 56889999999999999999 66689999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l 310 (368)
..+. .....+++|.|+.+|.+.+++++..++|+|++|+.++++....+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 7533 234468999999999999999999999999999998888888999999999999999653 379999999999
Q ss_pred HHhhcCCh--HH-HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017638 311 GNIVTGDD--FQ-TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 311 ~nl~~~~~--~~-~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
+||+...+ .. ...+.+.|+++.|..+|.++.++.++++|+|+|+|++.+...+
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~ 387 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 387 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH
Confidence 99997543 22 3347888999999999998834699999999999999876554
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.4e-28 Score=221.50 Aligned_cols=246 Identities=18% Similarity=0.198 Sum_probs=207.4
Q ss_pred hccHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHH
Q 017638 73 LESLPAMVAGVWS-----------DDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAW 140 (368)
Q Consensus 73 ~~~i~~l~~~l~~-----------~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~ 140 (368)
.+.++.|+.+|.+ .++..+..|+++|++++..+ .+....+. ..|+||.|+.+|.+++ ++++..|+|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~~A~~ 149 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLKSES-EDLQQVIAS 149 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHCHHHHHHHHHGGGCSC-HHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHHHCCCC-HHHHHHHHH
Confidence 4678999998852 24678999999999997643 33444444 4566999999999988 899999999
Q ss_pred HHHHHhcC-CCcchHHHhhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-hcCChHHHHHHhccccch
Q 017638 141 ALTNIASG-TSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVL-SQGALIPLLAQLNERAKL 217 (368)
Q Consensus 141 ~L~~l~~~-~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~-~~~~i~~l~~~l~~~~~~ 217 (368)
+|.|++.+ +++++..+++.|++|.|+.+ +.+.+.++++.++++|+||+...+..+..+. ..|+++.|+.+|....+.
T Consensus 150 aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence 99999985 56788999999999999997 4667899999999999999997666777776 789999999999544333
Q ss_pred ---hHHHHHHHHHHHhhc---CC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017638 218 ---SMLRNATWTLSNFCR---GK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (368)
Q Consensus 218 ---~~~~~a~~~L~~l~~---~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 290 (368)
++++.++|+|.||+. .. .........+++|.|+.+|.+.+.+++..|+|+|+||+.++++....+++.|+++.
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~ 309 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 309 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence 689999999999996 33 22223333789999999999999999999999999999888888899999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017638 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
|+.+|.++++.++..|+++|.||+.+.+..
T Consensus 310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 310 LKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999887643
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=6.2e-27 Score=233.11 Aligned_cols=284 Identities=19% Similarity=0.224 Sum_probs=246.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.++.|++.+.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 56899999999999999999999999998764 455666778999999999999977 8999999999999998888899
Q ss_pred HHHhhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 154 KVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
..+++.|+++.|+.+|++.+ ...++.++.+|.+|+.. +..+..+++.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999999755 45677899999999975 45788899999999999999 66788999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-CC-cchHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS-PSVLIPALRTV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~-~~v~~~a~~~l 310 (368)
..+. .....+++|.|+.+|.+.+++++..++|+|++|+.++++....+++.|+++.|+.+|.+ .+ ..++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 23346899999999999999999999999999999988888899999999999999965 33 38999999999
Q ss_pred HHhhcCChH---HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017638 311 GNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 311 ~nl~~~~~~---~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
+||+...++ ....+...|+++.|+.+|.++..+.++++|+|+|+|++.+...+
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 523 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH
Confidence 999875543 23467889999999999998834599999999999999876554
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=1.9e-27 Score=227.77 Aligned_cols=282 Identities=17% Similarity=0.203 Sum_probs=245.6
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.++.|++.+.+ ++++.+..|+..|+++... ..+...+.+.|++|.|+++|.+++ +.++..|+++|.+++.+++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 468999999975 4899999999999998543 456777889999999999999988 999999999999999977778
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
+..+.+.|+++.|+.+|.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888999999999999999999666677788889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
.+.........++++.|+.++.+++++++..++|+|.+++...+... ...|+++.|+.+|.++++.++..|+++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64332333336899999999999999999999999999997654321 123679999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhcCCH
Q 017638 313 IVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~ 361 (368)
++.++++....+.+.|+++.|+.+|.+. +++.++..|+++|+|++.+++
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~ 342 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence 9998888899999999999999999863 247999999999999998654
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=226.25 Aligned_cols=282 Identities=17% Similarity=0.200 Sum_probs=244.7
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.++.|++.|.++ +++.+..|+..|+++... ......+.+.|+++.|+++|.+++ +.++..|+++|.+++..++..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4589999999865 899999999999987543 446777889999999999999988 999999999999999977778
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999987788899999999999999999766677888999999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
...........++++.|+.++.+.+..++..++|+|.+|+...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6433333334689999999999999999999999999999764321 1113679999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHHHHHHHHhcCCH
Q 017638 313 IVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~ 361 (368)
|+.+++...+.+.+.|+++.|+.++.+.. .+.++..|+++|+|++.+++
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence 99988888899999999999999998742 37999999999999998543
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.95 E-value=4e-26 Score=191.91 Aligned_cols=200 Identities=35% Similarity=0.514 Sum_probs=181.1
Q ss_pred HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017638 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193 (368)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~ 193 (368)
...|..+.|+.+|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+||+.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 35678999999999988 99999999999999988889999999999999999999999999999999999999988888
Q ss_pred hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017638 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 194 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
.+..+.+.|+++.|+.+| .+++..++..++|+|.|++...+... .....+++|.|+.++.+++++++..++|+|++++
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999 77789999999999999998653222 2234789999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
..+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9888888889999999999999999999999999999999975
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=7e-26 Score=190.44 Aligned_cols=199 Identities=35% Similarity=0.511 Sum_probs=181.0
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017638 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 237 (368)
..|..+.|..+|.++++.++..|+|+|++++..++..+..+.+.|+++.|+.+| .++++.++..++|+|.+++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 347889999999999999999999999999988888899999999999999999 6778999999999999999765322
Q ss_pred -ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017638 238 -PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 238 -~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
......+++|.|+.+|.++++.++..++|+|++++.+.++....+++.|+++.|+.+|.++++.++..|+++|+|++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2233378999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 317 ~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++.....+.+.|+++.|..++.++ ++.+++.|+|+|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 888888899999999999999998 99999999999999975
No 32
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.94 E-value=8.8e-26 Score=198.02 Aligned_cols=226 Identities=16% Similarity=0.126 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 017638 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~ 210 (368)
.+-+..|+..|.+++. +.++...+...|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678999999999999 4678888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 017638 211 LNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289 (368)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 289 (368)
|..+++..+++.++|+|++++++.+... .....+++|.|+.+|+++++.++..++|+|++++.++++....+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9555688999999999999999864322 222368999999999999999999999999999988888889999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHc--CC---hHHHHHhhCCCC-CccHHHHHHHHHHHHhc
Q 017638 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GA---LPYLLGLLTHSH-KKSIKKEACWTISNITA 358 (368)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--g~---l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~ 358 (368)
.|+.+|.++++.++..|+++|++|+.+.+......-.. .+ +..-..-++..+ ..++.+.|..++-++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999865443322211 11 222233444332 35777778888887775
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.94 E-value=4.7e-26 Score=226.81 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=243.6
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.++.|++.|.++ +++.+..|+.+|+++... ..+...+.+.|+++.|+++|.+++ +.++..|+++|.+++..++..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 3588999999754 899999999999997543 445667888999999999999988 999999999999999977788
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+...|+++.|+.++...........++.+|.+|+.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888999999999999999999666667777889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
...........++++.|+.++.+.++.++..++|+|.+|+...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5433223334689999999999999999999999999999765321 1123679999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhCCCCC-ccHHHHHHHHHHHHhcCCHH
Q 017638 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~ 362 (368)
|+.+++.....+++.|+++.|+.+|.+..+ ..++..|+|+|+||+.++++
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch
Confidence 999988888999999999999999986423 38999999999999975543
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.92 E-value=5.3e-24 Score=186.74 Aligned_cols=239 Identities=15% Similarity=0.154 Sum_probs=188.7
Q ss_pred hccHHHHHHhhcCCC------------HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHH-hhcCCCCHHHHHHHH
Q 017638 73 LESLPAMVAGVWSDD------------SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE-FLMREDYPQLQFEAA 139 (368)
Q Consensus 73 ~~~i~~l~~~l~~~~------------~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~-lL~~~~~~~v~~~a~ 139 (368)
.+.++..+..|.++. .+.+..|+..|..++.. .++...+...|++|.|+. +|.+++ +.++..|+
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa 103 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHH
Confidence 345777777777652 35778899999988753 356677889999999999 999988 99999999
Q ss_pred HHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017638 140 WALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS 218 (368)
Q Consensus 140 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~ 218 (368)
|+|++++.+++.++..+++.|+++.|+.+|.+ ++..+++.|+|+|+||+.+.+.....+...|++++|+.+| ++++..
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~ 182 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQK 182 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHH
Confidence 99999999999999999999999999999985 5889999999999999998887778889999999999999 778999
Q ss_pred HHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc--CC---hHHHH
Q 017638 219 MLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA--GV---CPRLV 292 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~---~~~L~ 292 (368)
++..++|+|++|+.+.+... .....+++|.|+.+|.++++.++..++++|++|+.+.+......... .+ +..-.
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~ 262 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRC 262 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHH
Confidence 99999999999998753322 23337999999999999999999999999999998855443322211 11 11112
Q ss_pred HhcC-CC-CcchHHHHHHHHHHhhc
Q 017638 293 ELLG-HP-SPSVLIPALRTVGNIVT 315 (368)
Q Consensus 293 ~lL~-~~-~~~v~~~a~~~l~nl~~ 315 (368)
+.+. +. ..++...|..++-++..
T Consensus 263 ~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 263 QLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHccchHHHHHHHHHHHHHHHHHcC
Confidence 2233 22 24555666666666553
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=4.5e-24 Score=179.36 Aligned_cols=197 Identities=19% Similarity=0.140 Sum_probs=171.3
Q ss_pred cHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017638 118 VVPRFVEFLMREDYP--QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~ 195 (368)
.+|.|+++|.+++ + +++..|+++|.+++.++++.+..+.+.|+||.|+.+|.++++++++.|+|+|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999987 6 899999999999998888899999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------CCCHH
Q 017638 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------------SNDEE 259 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~----------------~~d~~ 259 (368)
..+.+.|++++|+.+|....+.++++.++.+|+||+..... ......+.+|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995567899999999999999976433 23334568999988763 13679
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcCC------CCcchHHHHHHHHHHhhcC
Q 017638 260 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 260 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~nl~~~ 316 (368)
++..+.++|.||+..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999877777788876 678999999853 2567899999999999864
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.4e-23 Score=196.92 Aligned_cols=289 Identities=12% Similarity=0.110 Sum_probs=224.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE-- 151 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~-- 151 (368)
..+.+.+.+.+++.+.+..|+..|..+.. . ......+. +.|+++.|+++++...+..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-K-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-S-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-C-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 46677788888777778999999998843 2 33344455 5677999999999633378999999999999984331
Q ss_pred ------------------------------------chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017638 152 ------------------------------------NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (368)
Q Consensus 152 ------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~ 195 (368)
.+..+.+.|++|.|+.++.++++.+++.++|+|+||+.+ +..|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 345678899999999999999999999999999999987 6789
Q ss_pred HHHHhcCChHHHHHHhccccch--hHHHHHHHHHHHhhcCC-CCCChh--hhhchHHHHHHhhcC-CCH-----------
Q 017638 196 DLVLSQGALIPLLAQLNERAKL--SMLRNATWTLSNFCRGK-PQPPFD--QVRPALPALAQLVHS-NDE----------- 258 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~~--~~~~~~~~L~~lL~~-~d~----------- 258 (368)
..+++.|++++|+.++....+. ..+..|+++|.++.... |...+. ...+++|.|+.+|.. ++.
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999555433 37899999999998653 221111 113899999999983 211
Q ss_pred --HHHHHHHHHHHHhhcCCh----HHHHHHHHc-CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC---
Q 017638 259 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG--- 328 (368)
Q Consensus 259 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g--- 328 (368)
--..+|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.+.+...+.+++.+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 126799999999998863 334667885 9999999999999999999999999999985542213344322
Q ss_pred ---ChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017638 329 ---ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 329 ---~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
.++.|+.++.++ +..+|+.|+|+|+|++.+++...+.+
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 378899999888 99999999999999988777655443
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=9.6e-23 Score=171.28 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=165.0
Q ss_pred cHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 75 SLPAMVAGVWSDDS--SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 75 ~i~~l~~~l~~~~~--~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
.++.++++|.++++ +.+..|++.++++.... +++...+++.|+||.|+++|.+++ +++|..|+|+|.||+.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 69999999999988 88999999999987653 566778899999999999999988 999999999999999988999
Q ss_pred hHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----c-----------ccc
Q 017638 153 TKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----E-----------RAK 216 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----~-----------~~~ 216 (368)
+..+.+.|+||.|+.+|. +++.++++.++.+|+||+... ..+..+.+. ++++|+.++. . ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 578999999999999999765 466777764 6999988652 0 126
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCh-hh-hhchHHHHHHhhcC------CCHHHHHHHHHHHHHhhcC
Q 017638 217 LSMLRNATWTLSNFCRGKPQPPF-DQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 217 ~~~~~~a~~~L~~l~~~~~~~~~-~~-~~~~~~~L~~lL~~------~d~~v~~~a~~~l~~l~~~ 274 (368)
.+++++++++|.||+...+.... .. ..|+++.|+.+++. .+...++.++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 69999999999999986422222 22 25788999999964 2568899999999999854
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.8e-22 Score=189.84 Aligned_cols=279 Identities=12% Similarity=0.101 Sum_probs=223.5
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCC-------------------C------------------chHHHHh
Q 017638 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERS-------------------P------------------PIEEVIQ 115 (368)
Q Consensus 74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~-------------------~------------------~~~~~i~ 115 (368)
+.++.|++.+++ ++....+.++..|.+++...+. | ....+++
T Consensus 376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e 455 (778)
T 3opb_A 376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR 455 (778)
T ss_dssp HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence 458889999984 7788899999999999774321 0 1234668
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHH---HHHHHHHHHHHhhCC-C
Q 017638 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD---VREQAVWALGNVAGD-S 191 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nla~~-~ 191 (368)
.|++|.|+.++.+++ +.++..|+|+|.|++. +++++..+++.|+++.|+.+|.+.... .+..|+++|.+|+.. +
T Consensus 456 aGvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 456 TELISFLKREMHNLS-PNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTHHHHHHHHGGGSC-HHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 999999999999988 9999999999999997 589999999999999999999986544 899999999999843 3
Q ss_pred hhhHHHHHh----cCChHHHHHHhccccch-------------hHHHHHHHHHHHhhcCCCC----CChhhh--hchHHH
Q 017638 192 PRCRDLVLS----QGALIPLLAQLNERAKL-------------SMLRNATWTLSNFCRGKPQ----PPFDQV--RPALPA 248 (368)
Q Consensus 192 ~~~~~~i~~----~~~i~~l~~~l~~~~~~-------------~~~~~a~~~L~~l~~~~~~----~~~~~~--~~~~~~ 248 (368)
|.. ++. .|++++|+.+|..++.. --...|+.+|.||+..+.+ .....+ .+++|.
T Consensus 534 p~~---~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~ 610 (778)
T 3opb_A 534 PGL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWST 610 (778)
T ss_dssp HHH---HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHH
T ss_pred HHH---HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHH
Confidence 432 221 37899999999522221 1266899999999988521 112223 379999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc------CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH
Q 017638 249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322 (368)
Q Consensus 249 L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~------~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 322 (368)
|..+|.+++..++..|+++++||+..+....+.+... +.++.|+.++.+++..++..|+++|+|++++.+..++
T Consensus 611 L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 611 IENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 9999999999999999999999998654321233322 2377899999999999999999999999988888888
Q ss_pred HHHHc-CChHHHHHhhCC--CCCccHHHHHHHHHHHHhc
Q 017638 323 CIITY-GALPYLLGLLTH--SHKKSIKKEACWTISNITA 358 (368)
Q Consensus 323 ~~~~~-g~l~~l~~ll~~--~~~~~v~~~a~~~l~nl~~ 358 (368)
.+++. ++++.++.++++ + ++.++..++.++.|++.
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred HHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence 88887 799999999998 7 99999999999999995
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.74 E-value=5.2e-16 Score=145.61 Aligned_cols=288 Identities=14% Similarity=0.202 Sum_probs=226.0
Q ss_pred ccHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCCCC----------------chHHHH-hcCcHHHHHHhhcCCCCHHH
Q 017638 74 ESLPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSP----------------PIEEVI-QSGVVPRFVEFLMREDYPQL 134 (368)
Q Consensus 74 ~~i~~l~~~l~~--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~i-~~g~i~~Lv~lL~~~~~~~v 134 (368)
.+++.|+..|+. .|.+....++..|..+++....+ ..+.++ +.+.++.|+.+|...+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 368999999985 47888888899998887754221 112333 5678999999999888 899
Q ss_pred HHHHHHHHHHHhcCCCc-chHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc
Q 017638 135 QFEAAWALTNIASGTSE-NTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN 212 (368)
Q Consensus 135 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~ 212 (368)
|..++.+|..++...++ .++.+.. .++++.|+.+|.++...+|..++..|.+|+.++++.++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999987766 6677775 499999999999999999999999999999999999999999999999999995
Q ss_pred ccc---chhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCH------HHHHH---HHHHHHHhhcCC----
Q 017638 213 ERA---KLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDE------EVLTD---ACWALSYLSDGT---- 275 (368)
Q Consensus 213 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~lL~~~d~------~v~~~---a~~~l~~l~~~~---- 275 (368)
... ...+...++.++.||.+.++ +.......+++|.|..+|..+++ ....+ ++.++.-++..+
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 433 34678899999999999864 33334446899999999875432 13333 666666666542
Q ss_pred --hHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHHHHHHHHcC---------ChHHHHHhhCCCCC
Q 017638 276 --NDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYG---------ALPYLLGLLTHSHK 342 (368)
Q Consensus 276 --~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g---------~l~~l~~ll~~~~~ 342 (368)
......+.+.|++..+++++..+ ...++..|+.+++.++.+++...+.+.... ++..|+.++.+.+.
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 24456788999999999998665 567899999999999999998777776532 33334455666546
Q ss_pred ccHHHHHHHHHHHHhcCCHH
Q 017638 343 KSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 343 ~~v~~~a~~~l~nl~~~~~~ 362 (368)
..+|-+|+.++..+..++++
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 89999999999999998874
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=1.4e-15 Score=142.76 Aligned_cols=286 Identities=16% Similarity=0.149 Sum_probs=226.2
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCCc
Q 017638 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
+.|+.|+.-+.+. -.+.++.|+..|+.+... ....+..++++.|+..|+.+ ++.++...++.+|.++....++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5799999999854 488999999999988432 22344566799999999864 3478888999999887764432
Q ss_pred -----------------chHHHh-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhc-CChHHHHHHh
Q 017638 152 -----------------NTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAQL 211 (368)
Q Consensus 152 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~-~~i~~l~~~l 211 (368)
..+.++ +.+.++.|+.+|.+++..++..++.+|..|+...+. .++.+... ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 122333 457899999999999999999999999999988877 88888854 8999999999
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCCChh-hhhchHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017638 212 NERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (368)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~L~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 286 (368)
.+..+.++..++..|.+|+.+.+..+.. ..+++++.|+.++.... ..+..+++.++.+|...+......+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 7778889999999999999986443333 33799999999997654 47899999999999999998888999999
Q ss_pred ChHHHHHhcCCCCcc------hHHH---HHHHHHHhhcCC------hHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHH
Q 017638 287 VCPRLVELLGHPSPS------VLIP---ALRTVGNIVTGD------DFQTQCIITYGALPYLLGLLTHSH-KKSIKKEAC 350 (368)
Q Consensus 287 ~~~~L~~lL~~~~~~------v~~~---a~~~l~nl~~~~------~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~ 350 (368)
+++.|..+|..+... .... ++.++.-++..+ ..+...+.+.|+++.+++++.++. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 1222 666666676652 245567889999999999987652 467999999
Q ss_pred HHHHHHhcCCHHHhh
Q 017638 351 WTISNITAGNRDQIQ 365 (368)
Q Consensus 351 ~~l~nl~~~~~~~i~ 365 (368)
.+++.+..|++..-+
T Consensus 335 ~tla~~irgN~~~Q~ 349 (651)
T 3grl_A 335 NTVSEVIRGCQVNQD 349 (651)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHH
Confidence 999999999877544
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.71 E-value=1.4e-15 Score=133.26 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=176.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
..++.|+..|.++++..+..|++.|.++.. .+.++.|+.+|.+++ +.++..|+++|+.+.... ...
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~-~~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccc
Confidence 468999999999999999999999998741 235889999999888 899999999999987532 111
Q ss_pred HHHhhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 154 KVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 154 ~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
. ..++.|. .++.++++.++..++++|+++....+.... ..++.++..+ .++++.++..++++|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 1234444 245778999999999999999754332211 2577888888 78899999999999998754
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
. ..+|.|..++.++++.++..++++|+.+....+. +++.|+..|.++++.+|..|+++|++
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 4788999999999999999999999998644332 46788889998999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+.. ...++.|..++.++ .++..|+++|+.+..
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD 250 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC
T ss_pred hCC-----------HhhHHHHHHHhcCc---cHHHHHHHHHHhcCc
Confidence 862 24677888888765 388999999998853
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=4.5e-16 Score=157.24 Aligned_cols=275 Identities=12% Similarity=0.145 Sum_probs=201.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
++.+++.+.++++.++..|++++..++... ...... .-.++++.++.++.+++ +.++..|+++|..++...++....
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHHH
Confidence 566777778889999999999999887542 211111 11356888999888887 899999999999999865544333
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHHhc----------cc---------
Q 017638 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLN----------ER--------- 214 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--~~~i~~l~~~l~----------~~--------- 214 (368)
.+. ++++.++..+.+.++.++..|++++..++... ..+..+.. ...++.++..+. .+
T Consensus 253 ~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd 330 (852)
T 4fdd_A 253 HMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330 (852)
T ss_dssp GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence 333 47888889999999999999999999998764 23332211 023455555551 12
Q ss_pred --cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 017638 215 --AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (368)
Q Consensus 215 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 292 (368)
.+..++..++.++..++...+ ......++|.+..++.++++.++..++++++.++.+..+...... .++++.++
T Consensus 331 ~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~ 406 (852)
T 4fdd_A 331 TISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLI 406 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHH
Confidence 123467888899998887643 134456888888999999999999999999999988765543322 46789999
Q ss_pred HhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017638 293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
..+.++++.+|..|++++++++...........-.++++.++..+.++ ++.+|..|+|+|++++.+.
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999864321111111225778888888888 8999999999999999643
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.66 E-value=6.8e-15 Score=128.82 Aligned_cols=201 Identities=13% Similarity=0.110 Sum_probs=161.8
Q ss_pred HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017638 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193 (368)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~ 193 (368)
...+.++.|+..|.+++ +.++..|+++|+++.. .++++.|+.+|.++++.++..++++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 35667999999999888 9999999999999873 24689999999999999999999999999754332
Q ss_pred hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017638 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 194 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~ 273 (368)
... .++.+...+..+++..++..++++|..++...+ ......++.|..++.++++.++..++++|+++..
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 233344333367889999999999999985432 1224678999999999999999999999998764
Q ss_pred CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017638 274 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
.+.++.|+.+|.++++.++..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2478999999999999999999999999864443 3467788899888 899999999999
Q ss_pred HHHh
Q 017638 354 SNIT 357 (368)
Q Consensus 354 ~nl~ 357 (368)
+++.
T Consensus 217 ~~~~ 220 (280)
T 1oyz_A 217 SYRK 220 (280)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9986
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=1.7e-15 Score=153.07 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=199.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHH-H---HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEE-V---IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 150 (368)
.++.+++.+.++++..+..|+.++..++... .+.... . .-.++++.|++++.+++ +.+|..|+++|.++....+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 4788899999999999999999999887542 111110 0 01346788888888877 8999999999998887543
Q ss_pred cchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017638 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
......+ .+.++.++.++.++++.++..++++|++++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus 207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 2111111 246788889999999999999999999999766543211111 2566777777 677899999999999999
Q ss_pred hcCCCCCC--hhhhhchHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017638 231 CRGKPQPP--FDQVRPALPALAQLV-----------HS-----------NDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (368)
Q Consensus 231 ~~~~~~~~--~~~~~~~~~~L~~lL-----------~~-----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 286 (368)
+....... ......++|.++..+ .+ .+..++..++.++..++...++. ++ ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence 97531110 112345677777776 22 12356888999999888543221 11 13
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017638 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
+++.+...+.++++.+|..|++++|+++.+........+ .++++.+..++.++ ++.+|..|+|++++++..
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 577788888889999999999999999998876544333 36899999999998 999999999999999974
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.63 E-value=1.4e-14 Score=121.21 Aligned_cols=189 Identities=22% Similarity=0.202 Sum_probs=158.6
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017638 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~ 195 (368)
.+.++.|+.+|.+++ +.+|..|+++|+.+.. .++++.|+.+|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456899999999888 9999999999998755 2578999999999999999999999999863
Q ss_pred HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017638 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~ 275 (368)
.+.++.|+..| .++++.++..++++|..+... ..++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 13678888998 788999999999999998642 578999999999999999999999999853
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017638 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
...++.|..++.++++.++..|+.+|+.+.. + ..++.|..+++++ ++.+|..|.++|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2357889999999999999999999999853 1 3467788888888 89999999999999
Q ss_pred HhcCCH
Q 017638 356 ITAGNR 361 (368)
Q Consensus 356 l~~~~~ 361 (368)
+...+.
T Consensus 201 ~~~~~~ 206 (211)
T 3ltm_A 201 HKSFNH 206 (211)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 987443
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.61 E-value=3.8e-14 Score=117.67 Aligned_cols=185 Identities=22% Similarity=0.209 Sum_probs=159.0
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017638 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~ 195 (368)
.+..+.++++|.+++ +.+|..|+++|+.+.. .++++.|+.+|.++++.++..++++|+.+...
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----- 75 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence 356889999999999 9999999999998765 25789999999999999999999999998532
Q ss_pred HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017638 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~ 275 (368)
+.++.|+..| .++++.++..++++|..+... ..++.|..++.++++.++..++++|+.+..
T Consensus 76 ------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 76 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 3678889988 778999999999999998542 578999999999999999999999999863
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017638 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
.+.++.|..++.++++.++..|+++|+.+. .+ ..++.|..++.++ ++.+|..|.++|.+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 246888999999999999999999999993 22 2467788888888 89999999999998
Q ss_pred Hh
Q 017638 356 IT 357 (368)
Q Consensus 356 l~ 357 (368)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 75
No 47
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.60 E-value=1.4e-14 Score=135.86 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=195.7
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCc
Q 017638 75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~ 151 (368)
.++.++..+.++ ++..+..|+.+|..++........... -..+++.++.++.++. ++.+|..|+++++++.....+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578899999988 899999999999998763211111111 1247888999998872 389999999999997653211
Q ss_pred chH-HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017638 152 NTK-VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 152 ~~~-~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
... ......+++.+...+.+++..++..++++|..++...+..-...+..+.++.++..+ .+.+..++..+++++..+
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHH
Confidence 110 001111467777788888999999999999999865543211111114566666666 677889999999999998
Q ss_pred hcCC---------------C--CCChh----hhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017638 231 CRGK---------------P--QPPFD----QVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAV 282 (368)
Q Consensus 231 ~~~~---------------~--~~~~~----~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~ 282 (368)
+... + ..... ....++|.++..+.. +++.++..++.+|..++..-.+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~ 363 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---H
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---H
Confidence 8642 0 01111 124567777777743 23578999999999998653321 1
Q ss_pred HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017638 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
+ ..+++.+...+.++++.+|..|+.++|.++.+.. ......+ ..+++.+..++.++ ++.+|..|+|+|++++...
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence 1 2467788888899999999999999999998764 2221122 46899999999998 8999999999999999743
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.59 E-value=9.2e-14 Score=116.27 Aligned_cols=188 Identities=21% Similarity=0.197 Sum_probs=157.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.++.|++.|.++++.++..|+..|..+.. .+.++.|+.+|.+++ +.++..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 468999999999999999999999998732 246899999999887 9999999999999864
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
.++++.|+.+|.++++.++..++++|+++... +.++.|+.++ .+++..++..++++|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence 25789999999999999999999999998532 2678899988 88899999999999999853
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017638 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
...++.|..++.++++.++..++++|+.+.. + ..++.|..++.++++.+|..|..+|+++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2578999999999999999999999999853 1 2467788888888999999999999999
Q ss_pred hcCCh
Q 017638 314 VTGDD 318 (368)
Q Consensus 314 ~~~~~ 318 (368)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 86554
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.57 E-value=3.5e-13 Score=111.84 Aligned_cols=184 Identities=21% Similarity=0.204 Sum_probs=157.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
...+.+++.|.++++.++..|+..|..+.. .+.++.|+++|.+++ +.++..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 468899999999999999999999997732 246899999999887 9999999999998854
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
..+++.|+.+|.++++.++..|+++|+++... ..++.|+..+ .++++.++..++++|..+..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence 14789999999999999999999999998532 2678888888 78899999999999999863
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017638 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
...++.|..++.++++.++..++++|+.+.. + ..++.|..++.++++.++..|..+|+.+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2688999999999999999999999999842 2 2467788888888999999999999987
Q ss_pred h
Q 017638 314 V 314 (368)
Q Consensus 314 ~ 314 (368)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=4.2e-14 Score=136.78 Aligned_cols=267 Identities=18% Similarity=0.151 Sum_probs=184.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
+..+.+.+.++++..+..|+.++.++.. .... ..+++.+.+++.+++ +.+|..|++++.++...+++..
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~-----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~-- 156 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV---DKIT-----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV-- 156 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGH-----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHH-----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence 4555666677777777777777766531 1111 224678999999888 9999999999999998666543
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017638 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
.+.+.++.+..+|.++++.++..|+++|+.++.+++..+......+.+..|+..+ .+.++..+..++.++..++...
T Consensus 157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~- 233 (591)
T 2vgl_B 157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD- 233 (591)
T ss_dssp -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS-
T ss_pred -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC-
Confidence 2346789999999999999999999999999988763210011112466777777 5667777778888777766321
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
......+++.+..++++.++.|+..|++++.++... +++..+.+. ..+.+.|+.+++ +++.++..|+.+|+.
T Consensus 234 ---~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 234 ---DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp ---HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 223457888999999999999999999999999742 233333322 245566666554 678888888888888
Q ss_pred hhcCChHH----------------------HHHHH---Hc----CChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017638 313 IVTGDDFQ----------------------TQCII---TY----GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 313 l~~~~~~~----------------------~~~~~---~~----g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
++...+.. .+.+. +. .+++.|...+.+. +..+|++++|+|++++...+.
T Consensus 309 i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 309 IVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 87421110 00010 11 2455566666676 888999999999999876543
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.52 E-value=2.3e-13 Score=131.38 Aligned_cols=267 Identities=14% Similarity=0.102 Sum_probs=198.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.+++.+++++++++..|+.++..++..-............++|.+..++.+++ +.+|..++++|+.++..... .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence 36677778888888888888888888876432221111233557889999999888 89999999999998862211 1
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.....++|.+..++.+++++++..++.+|+.++..... +. .....++.+..++ .+.+..++..++.++..++...
T Consensus 359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence 11234789999999999999999999999988753221 11 1123577777777 6778899999999999988643
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017638 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
+.. .....++|.+..++.++++.++..++.+++.++...... .....+++.+..++.++++.+|..++++++.++
T Consensus 434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 221 122457899999999999999999999999998542221 123457888888888888999999999999998
Q ss_pred cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
...+. ..+...+++.+..++.++ ++.+|..++++++.++.
T Consensus 509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGG
T ss_pred HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHH
Confidence 64322 123347889999999988 89999999999999986
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.51 E-value=6.1e-13 Score=128.44 Aligned_cols=225 Identities=13% Similarity=0.132 Sum_probs=165.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
++.+...+.++++.++..|+..+..+...- .. ......++|.|..++.+++ +.+|..|+.+|+.++...+. .
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~-~~---~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~ 237 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVL-EL---DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---E 237 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-CH---HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---H
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cH---HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---H
Confidence 555666777888999999999999887542 11 1223567899999998887 89999999999998874332 1
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017638 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
.....++|.+..++.+++..+|..++.+|+.++...+. .......++.++.++ .++++.++..++++|..++...+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence 22234788889999999999999999999999853211 112234688888888 77889999999999999998753
Q ss_pred CCCh--hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017638 236 QPPF--DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 236 ~~~~--~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
.... .....++|.+..++.+.++.++..++++|+.++..-... .....+++.+..++.++++.+|..++.+++.+
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 3211 234678899999999999999999999999987431111 11224667777777777777887777777776
Q ss_pred hc
Q 017638 314 VT 315 (368)
Q Consensus 314 ~~ 315 (368)
+.
T Consensus 391 ~~ 392 (588)
T 1b3u_A 391 NE 392 (588)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.50 E-value=1e-12 Score=127.10 Aligned_cols=263 Identities=18% Similarity=0.178 Sum_probs=195.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
..++.+++.+.+++...+..+...+..++... +... .-+++.+.+.|.+++ +.+|..|+.+|+++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~e~~----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--PDMA----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--HHHH----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--chHH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 35788899999999999988888888775431 1111 124678888888888 9999999999998863 4433
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
. ..++.+..++.++++.++..|++++++++..+|+. +...++++.+..+| .++++.++..|+++|..++..
T Consensus 120 ~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 E-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp H-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred H-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 3 24678899999999999999999999998766653 22345778888888 788999999999999999987
Q ss_pred CCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 234 KPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 234 ~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
.+.. ........++.|+..+...++..+...+.+++.++..++.... .+++.+..+|.+.++.++..|+++++.
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6543 2333456677788888888899999999999999866544332 357788888999999999999999999
Q ss_pred hhcC---ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017638 313 IVTG---DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 313 l~~~---~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
+... +++..+.+.. .+.+.|+.++. + ++++|..|+.+|+.++...|+
T Consensus 266 l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~ 315 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLLK-KLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPE 315 (591)
T ss_dssp SCCSCCBTTBSHHHHHH-HTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCS
T ss_pred HhhccCCCHHHHHHHHH-HHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChH
Confidence 8742 3333333322 45566665543 4 677777777777777764443
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.45 E-value=3.5e-12 Score=129.07 Aligned_cols=279 Identities=17% Similarity=0.206 Sum_probs=196.9
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCc
Q 017638 75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~ 151 (368)
.++.++..+.++ ++..+..++.++..++..- .+..-.-.-..+++.+...+.+++ ++.+|..|+++|.+++.....
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888 8999999999999887532 111101112345777888888762 389999999999998863221
Q ss_pred ch-HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017638 152 NT-KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 152 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
.. .......+++.+..++.+++.+++..++++|+.++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 11 0011112577788888888999999999999999875544322223334677777776 677889999999999888
Q ss_pred hcCC----------------C-CC--Chh--hhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017638 231 CRGK----------------P-QP--PFD--QVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAV 282 (368)
Q Consensus 231 ~~~~----------------~-~~--~~~--~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~ 282 (368)
+... + .. ... ....++|.++..+.. +++.++..++.++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 7641 1 11 111 225677778887752 34678999999999988543221 1
Q ss_pred HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017638 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 361 (368)
+ ..+++.+...+.++++.+|..|+++++.++.+.. +.....+ ..+++.++..+.++ ++.+|..|+|++++++...+
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence 2 2456777788888899999999999999998765 3333333 35899999999988 89999999999999997543
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.43 E-value=4.5e-12 Score=128.23 Aligned_cols=273 Identities=19% Similarity=0.233 Sum_probs=195.2
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 76 i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
++.+...+.++ +...+..|+.++..++..- .... .......+++.+..++.+++ ++++..++++|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 44456666665 6889999999999886531 1111 01111235777888887777 899999999999999865555
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------------hHHHHHhcCChHHHHHH
Q 017638 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----------------------CRDLVLSQGALIPLLAQ 210 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~----------------------~~~~i~~~~~i~~l~~~ 210 (368)
....+...+++.++..+.+.++.++..+++.+.+++..... .+..+ ...++.++..
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~ 329 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT 329 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence 44555557889999988888999999999999998753210 00011 1245667777
Q ss_pred hcc------ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 017638 211 LNE------RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVI 283 (368)
Q Consensus 211 l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~ 283 (368)
+.. +.+..++..+..++..++...+. .....++|.+...+.+.++.++..++++++.++.+.. +.....+
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 642 23567888999999998876431 3345678888888888999999999999999998754 4333333
Q ss_pred HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH--HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017638 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
.++++.++..|.++++.+|..|++++++++...+... ...+ ..+++.++..+.++ +.++..|+|+|++++..
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999987644211 0111 14677788888663 78999999999999863
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.42 E-value=9.4e-12 Score=120.82 Aligned_cols=252 Identities=14% Similarity=0.071 Sum_probs=184.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+..+.+.++++++..+-.|++++.++.. + .+. ..+++.+..+|.+++ +.+|..|+.++.++...+++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence 45667777778888888888888887742 1 121 345888999999988 99999999999999986665432
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc--------------ccchhHH
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------------RAKLSML 220 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~--------------~~~~~~~ 220 (368)
+.++.+..+|.++++.++..|+++|+.++..++.....+. ..++.++.+|.. ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 6788888999999999999999999999987765433333 478888887743 2478888
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017638 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (368)
Q Consensus 221 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 294 (368)
..++.+|..++...|. ....+.+.|..++. +.+..+...+++++..+... +.. . ..++..|..+
T Consensus 252 ~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~-~~a~~~L~~~ 321 (618)
T 1w63_A 252 VRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGL----R-VLAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHH----H-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHH----H-HHHHHHHHHH
Confidence 8999999999876431 12234445555442 23467899999999987643 221 1 1346778888
Q ss_pred cCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 295 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
|.++++.++..|+.+|+.++...+.. +. ...+.++.++.++ +..+|+.|..+|..++.
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVN 379 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCC
T ss_pred HhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcc
Confidence 88888999999999999998754432 22 3456677777777 77888888888888876
No 57
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.41 E-value=3.3e-12 Score=125.25 Aligned_cols=216 Identities=15% Similarity=0.080 Sum_probs=159.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-ChhhHH
Q 017638 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGD-SPRCRD 196 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~ 196 (368)
+.++++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+++..|+++|.||+.+ .+..++
T Consensus 36 i~Pll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 344667789988 8999999999999998 688888899999887765 578899999999999999999965 467888
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 017638 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~ 276 (368)
.+...|++++|..++.. ....+..+....... .......+ ..+...++.+|.+|+.+++
T Consensus 114 ~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~l~lL~~L~e~s~ 172 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKL-LKAQQRLV-----------WDITGSLLVLIGLLALARD 172 (684)
T ss_dssp HHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGS-CHHHHHHH-----------HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcChHHHHHHHHHh---------hHHHHhhhccccccc-cHHHHHHH-----------HHHHHHHHHHHHHHHhCCH
Confidence 99999999999999832 122222221111000 00001111 2345667788889998888
Q ss_pred HHHHHHHHcCChHHHHHhcCC---CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--CCCCCccHHHHHHH
Q 017638 277 DKIQAVIEAGVCPRLVELLGH---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL--THSHKKSIKKEACW 351 (368)
Q Consensus 277 ~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll--~~~~~~~v~~~a~~ 351 (368)
+....+...+.++.|+.+|.+ ....++..|+.+|..++..++...+.+.+.+....+..++ ... ....+..+|+
T Consensus 173 ~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~g 251 (684)
T 4gmo_A 173 EIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACG 251 (684)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHH
Confidence 888888888999999998833 2357999999999999999999888888876543322222 233 4557889999
Q ss_pred HHHHHhc
Q 017638 352 TISNITA 358 (368)
Q Consensus 352 ~l~nl~~ 358 (368)
+|.|+..
T Consensus 252 iL~Ni~~ 258 (684)
T 4gmo_A 252 VLHNVFT 258 (684)
T ss_dssp HHHHHHH
T ss_pred HHHhHhh
Confidence 9999863
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.39 E-value=8.1e-12 Score=126.10 Aligned_cols=274 Identities=18% Similarity=0.175 Sum_probs=192.0
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017638 76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 76 i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
++.+...+.++ ++.++..|+.++..++..- .... .......+++.|..++.+++ +.++..++.+|..++...++.
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 55566677766 7899999999999875321 1010 00011235777778887777 899999999999998754443
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-----------------hHHHHHhcCChHHHHHHhccc-
Q 017638 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-----------------CRDLVLSQGALIPLLAQLNER- 214 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-----------------~~~~i~~~~~i~~l~~~l~~~- 214 (368)
....+...+++.+...+.+.+..++..++.++..++..... ...... ...++.++..+...
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN 337 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 33333335677888888899999999999999998754211 111111 22567777777432
Q ss_pred -----cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCCh
Q 017638 215 -----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVC 288 (368)
Q Consensus 215 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~ 288 (368)
++..++..+..+|..++...+ ......+++.+...+.+.++.++..++++++.++.+.. +.....+. .++
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il 413 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QAL 413 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHH
Confidence 234788899999999887533 12345677888888888899999999999999997753 44333333 478
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH--HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017638 289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
+.++..+.++++.+|..++++++.++....... ...+ ..+++.++..+.+. +.++..|||++.+++.+
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH--PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC--hHHHHHHHHHHHHHHHh
Confidence 889999998999999999999999985421100 0011 14577788888653 78999999999999863
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.37 E-value=2.7e-12 Score=129.58 Aligned_cols=276 Identities=12% Similarity=0.129 Sum_probs=189.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch--
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-- 153 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-- 153 (368)
++.+.+.+.+.++..+..|+.++..++.+.........+ ..+++.++..+.+++ +.+|..++|+|+.++.......
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 344555667888999999999999997543112222222 247889999998887 9999999999999986321110
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hhhHHHHHhcCChHHHHHHhcc-ccchhHHHHHHHHH
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTL 227 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-----~~~~~~i~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L 227 (368)
... -..+++.++..+.++ +.++..++|+|.+++... ......+- ..++.++..+.. +.+..++..++.++
T Consensus 449 ~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 449 QQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHH--HHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 011 124578888888776 899999999999997531 11222221 246677777743 33478999999999
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhcCC---------------CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 017638 228 SNFCRGKPQPPFDQVRPALPALAQLVHSN---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (368)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~L~~lL~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 292 (368)
..++...+.........++|.++..+... ...++..++.++..++..-........ ..+++.++
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHH
Confidence 99998754433334456777777766421 356788999999999865433211111 24677778
Q ss_pred HhcCCCCc-chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017638 293 ELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 293 ~lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
..+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..|+++++.++...
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHT
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHh
Confidence 88877766 89999999999998654433333333 4788899988777 8889999999999988643
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.34 E-value=4.7e-11 Score=115.93 Aligned_cols=258 Identities=16% Similarity=0.125 Sum_probs=192.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
......++.+.+++.+.+..+...+..++.. ++..-.+ +++.|.+-|.+++ +.++..|+++|+++.. ++
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~-- 138 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SE-- 138 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HH--
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HH--
Confidence 3567888899999999888888888877643 2221112 4788888999888 8999999999999985 32
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
+. ...++.+..+|.++++.++..|+.+++++....|+... ++++.+..++ .+.++.++..++++|..++..
T Consensus 139 --~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 139 --MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp --HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred --HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence 22 24678889999999999999999999999987665322 4677777788 788999999999999999976
Q ss_pred CCCCChhhhhchHHHHHHhhcC---------------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc---
Q 017638 234 KPQPPFDQVRPALPALAQLVHS---------------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--- 295 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--- 295 (368)
.+.. ......++|.++.+|.. .++..+..++.+|+.++..+++..+ .+.+.|..++
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~ 283 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT 283 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence 4321 22345677877776652 4788999999999999987654322 3444454443
Q ss_pred ---CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017638 296 ---GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 296 ---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
++.+..+...|++++..+... +... . .+++.|..++.++ ++++|..|..+|+.++...|+.+
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~l~----~-~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~ 348 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSE-SGLR----V-LAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV 348 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCC-HHHH----H-HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCC-HHHH----H-HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH
Confidence 223457888999999987542 2211 1 3567888889988 89999999999999997666544
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.34 E-value=7.7e-12 Score=117.04 Aligned_cols=271 Identities=13% Similarity=0.031 Sum_probs=186.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC-Ccch
Q 017638 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQFEAAWALTNIASGT-SENT 153 (368)
Q Consensus 77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~l~~~~-~~~~ 153 (368)
..++..+.++++.+ ..++.++..++... .+.. .-.+++|.|+..+.++ + +.++..|+.+|+.++... ++..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~~~~---~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAE-IPVN---QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-GGGT---CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHh-cccc---ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence 34666677766666 66777777776532 1100 1246799999999987 6 899999999999999743 2221
Q ss_pred HHHhhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017638 154 KVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nla~~~~~~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
.... ..+++.+..++.++ +..++..|+++++++...-...- ........++.+...+ .+.+..++..++++|..+
T Consensus 167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 2222 24678888999887 79999999999999864322110 0000111244444455 677889999999999999
Q ss_pred hcCCCCCChhhhh-chHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH---------------------HHHHHHHcCCh
Q 017638 231 CRGKPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDGTND---------------------KIQAVIEAGVC 288 (368)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~~ 288 (368)
+...+..-..... .+++.++..+.+.+++++..+++.+..++....+ .....+ ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence 9765432223345 7888888888888999999999999988754210 111011 2356
Q ss_pred HHHHHhcCC-------CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017638 289 PRLVELLGH-------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 289 ~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 361 (368)
+.++..+.. +++.+|..|+.+++.++...+. .++. .+++.+...+.++ ++.+|..|+++++.++.|..
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence 667777743 3468899999999999875542 2222 5678888888888 99999999999999998654
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.32 E-value=1.2e-11 Score=129.65 Aligned_cols=274 Identities=14% Similarity=0.138 Sum_probs=199.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.++..+.+.|++.+..|...|.+.+... ......-....+++.+++.|.+++ +.+|..|+.+|+.++...++ .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence 5889999999999999999999998876542 111111112346888999998777 99999999999999975443 1
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 228 (368)
. . ..+++.|+..+.++++.+|..++.+|+.++...... ... .....++.|+..+..+++..++..++.++.
T Consensus 83 ~-~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 Q-V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp H-H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred H-H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 1 1 236788888888888999999999999998543211 111 122368888888843578899999999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHH
Q 017638 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPAL 307 (368)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~ 307 (368)
.++...+..-......+++.+...|.++++.++..++.+++.++....+.. + ..+++.++..|... ++.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---F-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---H-HHHHHHHHHHhccCCchhHHHHHH
Confidence 999653322222446788889999999899999999999999997654321 1 24577777777443 357788899
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017638 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 361 (368)
.+++.++...+......+ ..+++.++..+.+. ++.+|..+.+++..++...+
T Consensus 236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHCh
Confidence 999999865443221111 26789999999887 89999999999999987443
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=2.9e-09 Score=103.18 Aligned_cols=301 Identities=13% Similarity=0.132 Sum_probs=196.8
Q ss_pred CCCchHHHhhhHHHHHHHHHHhhh----HHHHhhhhhc-----cCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCCHH
Q 017638 19 AVDADEGRRRREDNMVEIRKNKRE----ESLLKKRREG-----LQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSS 89 (368)
Q Consensus 19 ~~~~~~~r~kr~~~~~~lRk~kr~----~~l~~kr~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 89 (368)
.++.++-+++=.....++|+.-+. ..-.|++.+. .-.+.+.+ ......++.+.+++..
T Consensus 23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s-------------~~~~~vvkl~~s~~~~ 89 (621)
T 2vgl_A 23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDID-------------FGHMEAVNLLSSNRYT 89 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCC-------------SCHHHHHHGGGCSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCc-------------hhHHHHHHHhcCCCHH
Confidence 345556666666666788877663 2223333211 00111101 3578889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh
Q 017638 90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169 (368)
Q Consensus 90 ~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL 169 (368)
.+..+...+..++..+ +..-.+ +++.+.+-|.+++ +.++-.|+.+|+++.. ++. .+ ..++.+.++|
T Consensus 90 ~Krl~YL~l~~~~~~~--~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~----~~-~l~~~v~~~l 155 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSN--SELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REM----AE-AFAGEIPKIL 155 (621)
T ss_dssp HHHHHHHHHHHSCCCC--HHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHH----HH-HHTTHHHHHH
T ss_pred HHHHHHHHHHHHccCC--cHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHH----HH-HHHHHHHHHH
Confidence 9998888888776432 221112 3677888888888 9999999999999965 332 22 4678889999
Q ss_pred --CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 017638 170 --ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP 247 (368)
Q Consensus 170 --~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 247 (368)
.+.++.|+..|+.++.++....|+. +...+.++.+..+| .+.++.++..++.++..++...+. .....+|
T Consensus 156 ~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~----~~~~~~~ 227 (621)
T 2vgl_A 156 VAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPE----EFKTSVS 227 (621)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHH----HHTTHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChH----HHHHHHH
Confidence 8899999999999999999766643 22246889999999 788999999999999999876432 1112233
Q ss_pred HHH----HhhcCC-------------CHHHHHHHHHHHHHhhcCC-hHHHHH-------HH-------------------
Q 017638 248 ALA----QLVHSN-------------DEEVLTDACWALSYLSDGT-NDKIQA-------VI------------------- 283 (368)
Q Consensus 248 ~L~----~lL~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~-------~~------------------- 283 (368)
.++ .++... ++..+...+..++.++..+ ++.... ++
T Consensus 228 ~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~ 307 (621)
T 2vgl_A 228 LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN 307 (621)
T ss_dssp HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHH
Confidence 222 222111 3455555555555554321 111110 00
Q ss_pred -------------------HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC-CCCCc
Q 017638 284 -------------------EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKK 343 (368)
Q Consensus 284 -------------------~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~-~~~~~ 343 (368)
-..++..|..+|.++++.++..|+..|..++...+. .. ++. .....++.+|. ++ +.
T Consensus 308 aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~-d~ 383 (621)
T 2vgl_A 308 AVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTER-DV 383 (621)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCC-CH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCC-CH
Confidence 012355666777777888888888888888876531 11 222 45677888888 77 88
Q ss_pred cHHHHHHHHHHHHhc
Q 017638 344 SIKKEACWTISNITA 358 (368)
Q Consensus 344 ~v~~~a~~~l~nl~~ 358 (368)
.+|..|.-++..++.
T Consensus 384 ~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 384 SVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcC
Confidence 999999999998874
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.10 E-value=4.2e-09 Score=82.13 Aligned_cols=185 Identities=15% Similarity=0.217 Sum_probs=151.1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017638 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 237 (368)
+..++..++.+|.++-..++..|+..+.+++...|+..+. .+..|+.++..+....+...+..+++.++.-+|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 3457888999999999999999999999999988876554 356677777778888888888999999987654
Q ss_pred ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 017638 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 317 (368)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 317 (368)
..+.+.+|.+..-..-.|++++.....+|..++..+++... +++.-+..++.+++..-+..|+..|+.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45568888888888888999999999999999988776654 34667888888888888888888888887655
Q ss_pred hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017638 318 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 318 ~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
..... ..+|.|..+|.+. +.-+|..|.-+|.|++.-++.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHH
Confidence 43332 5789999999998 899999999999999988876
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.08 E-value=1.1e-10 Score=114.51 Aligned_cols=195 Identities=12% Similarity=0.087 Sum_probs=145.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcC-CCc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQFEAAWALTNIASG-TSE 151 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~-~~~ 151 (368)
+.+.++++.|+++++..|..|+.+|.+++.. ......+...|++..++ .+|.+++ .+++.+|+++|.|++.+ ..+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCch
Confidence 3577888999999999999999999999752 45566677888887654 5677777 89999999999999963 467
Q ss_pred chHHHhhCCChHHHHHhhCCCC---------------------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 017638 152 NTKVVIDHGAVPIFVKLLASPS---------------------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~---------------------~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~ 210 (368)
....++..|++++|..++.+.. ..+.+.++++|++||..+....+.+...+.++.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 7788999999999999885310 2355678899999998777777888888899999998
Q ss_pred hcccc--chhHHHHHHHHHHHhhcCCCCCChhhh-h---chHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017638 211 LNERA--KLSMLRNATWTLSNFCRGKPQPPFDQV-R---PALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 211 l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~---~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
|.... ..++...++.+|..++.+.+....... . .++..+..+..+.+ ..+..+++.+.|+.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 84332 468999999999999987532111111 1 23334444444433 34667788888864
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.05 E-value=1.8e-09 Score=113.26 Aligned_cols=275 Identities=13% Similarity=0.171 Sum_probs=188.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc----hHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGT 149 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~----~~~~i~~g~i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~ 149 (368)
.++.++..+.++++..+..|+.++..++..-.... ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 36777888888888888888888888875432210 1111234578999999984 55 899999999999998532
Q ss_pred CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017638 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
........ ...++.|+..|.+++..++..|+.+|+.++...+. .+. ...++.++..+....+..++..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 22111111 24667788888888999999999999999976532 122 23578888888554445677788889998
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC------------
Q 017638 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------------ 297 (368)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~------------ 297 (368)
++...+..-......++|.+...+.+++++++..+++++..++....+.....+ ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887643322233467999999999988999999999999998865332111111 1234444444421
Q ss_pred -------------------------CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHH
Q 017638 298 -------------------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (368)
Q Consensus 298 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~ 352 (368)
..+.+|..|+.+++.++...+.....++ ..+++.+...+.+. ++.+|..+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1245688999999999875543333344 36788888888887 89999999998
Q ss_pred HHHHhc
Q 017638 353 ISNITA 358 (368)
Q Consensus 353 l~nl~~ 358 (368)
+..++.
T Consensus 398 l~~l~~ 403 (1230)
T 1u6g_C 398 YLSLLK 403 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.05 E-value=1.2e-07 Score=73.98 Aligned_cols=216 Identities=16% Similarity=0.188 Sum_probs=169.2
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 017638 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPR 193 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~ 193 (368)
+..++..++.+|.++- ..++..|+.++.+++...++....+ +..|+.+++ ++...+......++|.++...|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 5567899999999877 8999999999999999777765544 345666654 66778878899999999988876
Q ss_pred hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017638 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 194 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~ 273 (368)
.-+. .+|.+..-+ .-.++.++.+..++|..+.+..| ....+++.-+..++.+.|..-+..++..++.+..
T Consensus 104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 4222 455555555 44599999999999999998764 3445677788889998897778888888888776
Q ss_pred CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017638 274 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
+..... .-+++.|..+|.+.+.-+|..|+.++++++..++..+..+.+ -+.-+.+. +..+++...-.|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCS-CHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCc-HHHHHHHHHHHH
Confidence 655443 346899999999999999999999999999999976553333 45556777 888999999999
Q ss_pred HHHhc
Q 017638 354 SNITA 358 (368)
Q Consensus 354 ~nl~~ 358 (368)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.00 E-value=4.1e-08 Score=96.84 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=172.4
Q ss_pred HHHHHHhhcCCC--------HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017638 76 LPAMVAGVWSDD--------SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 76 i~~l~~~l~~~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+..|...+.+++ +.++..|+..|.....+..++ .+++.|...|.+++ +.++..|+.+|+.+..
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 455566665444 556667777777654443221 23677888888777 6778889999998865
Q ss_pred CCCcchHHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHH
Q 017638 148 GTSENTKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT 226 (368)
Q Consensus 148 ~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 226 (368)
++... .++..|++.+ .+.+..++..++.+|+.+....++ .++.+++.|..+.++-++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 54321 1344555543 456789999999999999877654 578888888777888888888888
Q ss_pred HHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHH
Q 017638 227 LSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLI 304 (368)
Q Consensus 227 L~~l~~~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~ 304 (368)
++.-+-+..+ ...++.|+..+ .+.+..++..|+.+|+.+..+.++ .++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 8765555322 13455444444 455788999999999998877542 356666655 677899999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017638 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
.|..++|.++.+++.. .+++.|..+..+. +..||..|+.+|+.+.+|+.+.
T Consensus 631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999887631 2355677778888 9999999999999999986654
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.98 E-value=4.1e-08 Score=95.08 Aligned_cols=255 Identities=15% Similarity=0.132 Sum_probs=178.0
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 76 LPAMVAGV--WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 76 i~~l~~~l--~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
++.+.+.+ .+.++.++..|+.++.++.... +. .+...++++.+.++|.+++ +.++..|+.++..++..+++.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~--~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~- 221 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PD--LVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEE- 221 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GG--GCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hh--hcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHH-
Confidence 45666677 6777888888888888887642 11 1112478999999998877 999999999999999865432
Q ss_pred HHHhhCCChHHHHH----hhCCC-------------CHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhc---
Q 017638 154 KVVIDHGAVPIFVK----LLASP-------------SDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLN--- 212 (368)
Q Consensus 154 ~~~~~~g~i~~L~~----lL~~~-------------~~~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~--- 212 (368)
+ ...+|.++. ++... ++-.+...+..|+.++.. ++..++.+.+ .+..++..+.
T Consensus 222 --~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 222 --F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp --H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred --H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 1 123444443 33221 577888999999999863 4555554443 3444544331
Q ss_pred -----cccch--hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017638 213 -----ERAKL--SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (368)
Q Consensus 213 -----~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 285 (368)
++.+. .+...++.++..+.. .......+++.|..+|.+.+++++..++.+|..++...+.. . ++ .
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~ 367 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-K 367 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-H
T ss_pred ccccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-H
Confidence 12233 778888888888751 22344567888999999899999999999999999765421 1 22 2
Q ss_pred CChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 286 GVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 286 ~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.....++..|. +++..++..++.++..++.. .+.+.+ +..|...+.+. +.+++.+++.+++.++.
T Consensus 368 ~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I-----v~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 368 THIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI-----VAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH-----HHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH-----HHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 45777888888 88999999999999999853 344433 44566666666 78899999998888874
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.98 E-value=7.3e-09 Score=88.24 Aligned_cols=185 Identities=13% Similarity=0.103 Sum_probs=141.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017638 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
.+.+.+.+.++..+..|+..|..++.+... ..... -..+++.|..++. +++ +.++..|+.+++.++..-.......
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPK-LENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCC-CCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 478888999999999999999999876211 11000 1245788888995 777 8999999999999996322222222
Q ss_pred hhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 017638 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-P 235 (368)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~ 235 (368)
+. .++|.++..+.+.+..+++.+..+|.+++...+ + + ..++.+...+ .+.++.++..++..|..+.... +
T Consensus 96 ~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 AS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCC
Confidence 22 478999999999999999999999999987643 2 1 1567788888 6778999999999999965543 3
Q ss_pred C-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017638 236 Q-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 236 ~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
. ........++|.+..++.+.+++++..|..+++.++..
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 22344578999999999999999999999999988843
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.97 E-value=3.1e-09 Score=90.58 Aligned_cols=184 Identities=12% Similarity=0.149 Sum_probs=139.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-hhhHHH
Q 017638 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDS-PRCRDL 197 (368)
Q Consensus 120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~-~~~~~~ 197 (368)
+.+.+.+.+.+ ...|..|+..|..+..+.+....... ..+++.|...+. +.+..++..|+.+++.|+..- +.+...
T Consensus 18 ~~l~~~l~s~~-w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKK-WTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSS-HHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCC-HHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44778888877 89999999999999875333211101 135778888884 899999999999999998432 122222
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-Ch
Q 017638 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TN 276 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~ 276 (368)
+.. +++.++..+ .+.+..++..+..++..++...+ ...++|.+...+.+.++.++..++..|+.+... .+
T Consensus 96 ~~~--ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 ASA--CVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 222 688888888 77889999999999999987532 356889999999999999999999999996544 22
Q ss_pred HH-HHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 277 DK-IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 277 ~~-~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
+. ....+ ..+++.++..|.++++.+|..|..+++.++.
T Consensus 167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 21 11222 2578999999999999999999999999975
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.95 E-value=1e-07 Score=84.69 Aligned_cols=252 Identities=11% Similarity=0.047 Sum_probs=164.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+..+++.+.++|...+.-....+..+... .++.+ + +++.|.+-+.+++ +-+|-.|+++|++|... +..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence 467788899999999999888888776543 12211 2 4788999999998 99999999999999883 3322
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.+.+.+.+.|.+.++.|+..|+.+...+....|+.. + ++++.+-+++ .+.++.++.+++.++..++..+
T Consensus 139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 245778889999999999999999999998887642 2 5888898888 7889999999999999999753
Q ss_pred CCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017638 235 PQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (368)
+ ..+..++..+... ++-.+...+..+..++..++.. ....+++.+..+|++.++.|.-.|+++|.
T Consensus 208 ~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 R--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp H--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHT
T ss_pred h--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 1 1333344444332 4666666666666665543111 12356778888899999999999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017638 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (368)
Q Consensus 312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~ 365 (368)
.+...+.. +. ..++..+..++.++ ++.+|-.|...|..++...|+.++
T Consensus 276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~ 323 (355)
T 3tjz_B 276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT 323 (355)
T ss_dssp C----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------
T ss_pred hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH
Confidence 88653221 22 24456677778888 889999999999888887777665
No 73
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.91 E-value=3.2e-08 Score=87.96 Aligned_cols=243 Identities=13% Similarity=0.088 Sum_probs=139.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
....+.+.++++++-.+-.|++.+.++... .-.+. +.+.+.+.|.+.+ |-|+..|+.+...+....++.
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~-- 173 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDV-- 173 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHH--
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHH--
Confidence 477888999999999999999999999642 22333 4677888888888 999999999999999876653
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc--chhHHHHHHHHHHHhhc
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCR 232 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~ 232 (368)
++ +.++.+-.++.+.++-++.+|+.+|..+...+.. .+..++..+.... ++-.+...+..+..++.
T Consensus 174 --v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 174 --VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp --HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred --HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 33 6889999999999999999999999999876532 3455555553322 34444444444444443
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
.+ .......+++.+..+|++.++.|..+|+.+|.++...+... . ..++..+..+|+++++.++-.|++.|..
T Consensus 242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLNK 313 (355)
T ss_dssp ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 32 11223467788888999999999999999999987532221 1 2346667778888999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017638 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
++...+...+ ..-.-+..++.++ +..+.-.|..+|-
T Consensus 314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittll 349 (355)
T 3tjz_B 314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTLL 349 (355)
T ss_dssp ------------------------------------------
T ss_pred HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHhh
Confidence 9987775443 2344467778888 7777666665553
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.90 E-value=1.6e-08 Score=86.32 Aligned_cols=190 Identities=12% Similarity=0.174 Sum_probs=141.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHH-HhcCCCcchHHHhh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 017638 122 FVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVID-HGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDS--PRCR- 195 (368)
Q Consensus 122 Lv~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~--~~~~- 195 (368)
+.+.+.+.+ +.-|.+|+..|.. ++.+++.......+ ...+..|...+ ++.+..++..|+.+|+.|+.+- +.+.
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 556677777 8999999999999 87654432210011 13467778888 7889999999999999998432 2232
Q ss_pred HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017638 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
..... .++.++..+ .+....++..+..++..++...+.... .....+++.|...|.+.++.++..++.+|..++..
T Consensus 100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 33333 688888888 677788999999999999986422111 11457889999999999999999999999999865
Q ss_pred Ch---HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 275 TN---DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 275 ~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.. ......+...+++.+.+++.+.++.+|..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 43 333333335789999999999999999999999999873
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=2.6e-07 Score=75.28 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=151.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+..++.++...|+..+..|+..+.+++..- +......+-..+++.++.++.+.+ ..+...|+.||..+..+.+-..+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence 5778899999999999999999999999863 333444455667999999999888 89999999999999997776666
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.+.. ++..|..++.++++-+++.++..++.+-.-++ .+ +.+..+.+++ .+.+..++..+..++.+++...
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence 6664 57889999999999999999999999933222 11 2467788888 8999999999999999999865
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017638 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~ 275 (368)
..+. ....++.-+-.+|++.|+.++.-|+.++-.+...+
T Consensus 182 ~D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 182 ADSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SSCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 3322 23456667778889999999999999999988663
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.83 E-value=6.5e-10 Score=85.19 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=94.3
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017638 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~ 195 (368)
...++.++.+|.+++ +.+|..|+++|+.+.. ..++.|+.+|.++++.++..++|+|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 445788999999888 8999999999986643 136899999999999999999999999863 1
Q ss_pred HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 017638 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l 271 (368)
..++.|+..+ .+++..++..++|+|..+.. ...++.|..++.++++.|+..++++|+.+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1478899988 78899999999999999863 25789999999999999999999998753
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.82 E-value=6.1e-08 Score=82.68 Aligned_cols=197 Identities=12% Similarity=0.143 Sum_probs=142.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhhHHHHHh-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh--
Q 017638 164 IFVKLLASPSDDVREQAVWALGN-VAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-- 239 (368)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~n-la~~~~~~~~~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-- 239 (368)
.+...+.+.+..-|..++..|+. ++.+.+.......+ ...+..+...+..+.+..++..++.++..|+.+-....+
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 87543322100001 123566667775677899999999999999976431233
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-
Q 017638 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD- 318 (368)
Q Consensus 240 ~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~- 318 (368)
.....++|.++..+.+..+.|+..+..++..++...+.......-..+++.|...|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 3456789999999998889999998888888875321100000001257788899999999999999999999986554
Q ss_pred --HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCH
Q 017638 319 --FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNR 361 (368)
Q Consensus 319 --~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~ 361 (368)
......+...++|.+..++.++ ++.+|..|..+++-++. |..
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSG
T ss_pred cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHH
Confidence 3333344357899999999999 99999999999999885 553
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.81 E-value=8.9e-08 Score=77.96 Aligned_cols=183 Identities=19% Similarity=0.154 Sum_probs=147.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017638 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 238 (368)
+.+..|..+|.+.++.++..++.+|.++...-+. .+...++ ..++.++.++ .+.|..+.-.|+.|+..|..+.|-.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~- 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMG- 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBC-
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCC-
Confidence 4688899999999999999999999999876433 3333333 3789999999 8899999999999999999886433
Q ss_pred hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017638 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
...+..+..++..++.+.++-++.+++..++.+--..... +++..+..++.+.+..++..+++++.++++.+.
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 3344568889999999999999999999999994332221 346778888899999999999999999998653
Q ss_pred --HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 319 --FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 319 --~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+... +++.-+..+|++. ++.+++-|.-++-++..
T Consensus 183 D~~i~~-----~I~~eI~elL~~e-D~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 183 DSGHLT-----LILDEIPSLLQND-NEFIVELALDVLEKALS 218 (265)
T ss_dssp SCCCGG-----GTTTTHHHHHTCS-CHHHHHHHHHHHHHHTT
T ss_pred CHHHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 2222 5666788899999 99999999999988875
No 79
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.76 E-value=1.2e-06 Score=86.51 Aligned_cols=247 Identities=16% Similarity=0.137 Sum_probs=173.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.|...+..++......|+..+..+..++.+.. ++..|++.+....+..++..++.+|+.+..+.++
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~--------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e--- 541 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE--------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE--- 541 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH--------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH--------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence 46777888877777666677788877655542222 2455666554443478999999999999887665
Q ss_pred HHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
.++.++..|. +.++.++..++.+++--....... ..++.|+..+..+.+..+++.|+.+|+.+..+
T Consensus 542 ------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 542 ------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp ------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred ------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC
Confidence 4556666554 578899999998887554332211 15777888876777889999999999998766
Q ss_pred CCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 234 KPQPPFDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~-lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
.+ ..++.++. ++++.|+.++..++++++.++.+.+.. .++..|..++++++..++..|+.+||.
T Consensus 609 ~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 609 DY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp SC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 43 23555555 446789999999999999998765432 236677888889999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhcCCH
Q 017638 313 IVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~ 361 (368)
+..++.+....-+ .+++..|.....+. +++..+-.|+.+.+-+-+|..
T Consensus 674 Ig~gtnna~~~rv-a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 674 ILIQQTEKLNPQV-ADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HSTTCCTTTCTTH-HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HhcCCccccchHH-HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 9876553311000 02345566666542 267788888888888877643
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.68 E-value=1.9e-09 Score=82.55 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=93.9
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017638 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238 (368)
Q Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 238 (368)
...++.+..+|.++++.++..|+++|+++... .++.|+..| .++++.++..++|+|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence 35688899999999999999999999987421 258888888 68899999999999998763
Q ss_pred hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017638 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
...++.|..+|.++++.|+..++++|+.+.. + +.++.|..+|.++++.++..|+++|+.|
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2578999999999999999999999999862 1 2477889999988999999999998754
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.55 E-value=2.1e-06 Score=78.14 Aligned_cols=233 Identities=13% Similarity=0.145 Sum_probs=155.0
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhc--CcHHHHHHhhcC----------------CCCHHHHHHHH
Q 017638 79 MVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQS--GVVPRFVEFLMR----------------EDYPQLQFEAA 139 (368)
Q Consensus 79 l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~--g~i~~Lv~lL~~----------------~~~~~v~~~a~ 139 (368)
++..|.+ ++...+..++.++..++.. ...+..+.+. +++|.++.+++. +-..+++++++
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4445554 3455677788888888763 3444455543 347777655441 10267899999
Q ss_pred HHHHHHhcCCCcchHHHhhCCCh--HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh----h-hHHHHHhcCChHHHHHHh
Q 017638 140 WALTNIASGTSENTKVVIDHGAV--PIFVKLLAS-PSDDVREQAVWALGNVAGDSP----R-CRDLVLSQGALIPLLAQL 211 (368)
Q Consensus 140 ~~L~~l~~~~~~~~~~~~~~g~i--~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~----~-~~~~i~~~~~i~~l~~~l 211 (368)
.|++-++.. ++....+...++. +.|+..++. ....+.+.++.+|.|+....+ . ..+.++..++ ++++..|
T Consensus 250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 999999994 5666667666643 566666664 568999999999999997653 1 2223333333 5666666
Q ss_pred cc--ccchhHHHHHHHHHHHhh---------------------cCCCCCCh---------h---hhhchHHHHHHhhcC-
Q 017638 212 NE--RAKLSMLRNATWTLSNFC---------------------RGKPQPPF---------D---QVRPALPALAQLVHS- 255 (368)
Q Consensus 212 ~~--~~~~~~~~~a~~~L~~l~---------------------~~~~~~~~---------~---~~~~~~~~L~~lL~~- 255 (368)
.. -.|+++....-+....|- ++.|.-.. . ....++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 43 236665554333322221 22111100 0 012467788999973
Q ss_pred ---------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 256 ---------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 256 ---------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.|+.+..-||.=|+.++.+.+.....+-+.|+=..+++++.+++++++..|+.|++.+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478899999999999998877776666677999999999999999999999999998764
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.51 E-value=4.7e-06 Score=75.92 Aligned_cols=235 Identities=16% Similarity=0.146 Sum_probs=159.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC--ChHHHHHhhCC-----------------CCHHHHHHHH
Q 017638 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLAS-----------------PSDDVREQAV 181 (368)
Q Consensus 121 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~-----------------~~~~v~~~a~ 181 (368)
.++..|......+.+.-++.+|..+.. .++.+..+.+.+ .++.++.++.. ....++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 566666664325667789999999988 477787777643 35666543331 1356788999
Q ss_pred HHHHHhhCCChhhHHHHHhcCCh--HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-----hh-hchHHHHHHhh
Q 017638 182 WALGNVAGDSPRCRDLVLSQGAL--IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-----QV-RPALPALAQLV 253 (368)
Q Consensus 182 ~~L~nla~~~~~~~~~i~~~~~i--~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-----~~-~~~~~~L~~lL 253 (368)
.+++-++.+.+ ..+.+...+.. +.|+..++....+.+.+-++.+|.|+....+..... .. .++ +.++..|
T Consensus 250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99999988765 45566655533 566677766778999999999999999865322111 11 234 3455555
Q ss_pred c---CCCHHHHHHHHHHHHHhhc---------------------CChHH---------HHHHHH--cCChHHHHHhcCC-
Q 017638 254 H---SNDEEVLTDACWALSYLSD---------------------GTNDK---------IQAVIE--AGVCPRLVELLGH- 297 (368)
Q Consensus 254 ~---~~d~~v~~~a~~~l~~l~~---------------------~~~~~---------~~~~~~--~~~~~~L~~lL~~- 297 (368)
. -.|+++..+.-...-.|-. -++.+ ...+.+ ..++..|+.+|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 3 2467666554333322211 11111 011111 1457888999963
Q ss_pred ---------CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017638 298 ---------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 298 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
.++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|..|+.-+...
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 3688899999999999999998888777889999999999999 999999999999887653
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.18 E-value=0.00058 Score=68.47 Aligned_cols=263 Identities=12% Similarity=0.116 Sum_probs=177.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCC-CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
.+..+.+.+...... ..|+..+..++.... .++.+. .-.+++|.++..+.+.. ..++..|..++..+...-+...
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP-YIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH-HHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc-chHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence 455666666543322 677788888874331 223322 22267999999998877 7899988888888776322222
Q ss_pred HHHhhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017638 154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
. ..++|.|+..|.+. ....+..|+.++..|+...+..-..-+ ...+|.+...+ .+..+++...+..++..+|.
T Consensus 131 ~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 131 I----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp H----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGG
T ss_pred H----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHHh
Confidence 1 24589999988754 589999999999999976653222111 12566666776 77889999999999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
--.+.+ +.+.+|.|++.+.+++. ...+...|+.-+.-.. .-.-.+ .+|.|.+-|...+..+...++-++
T Consensus 205 ~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 205 TVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVII 275 (986)
T ss_dssp GCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred cCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEE
Confidence 544443 35789999999987743 4444455544433221 111112 367777778888888899999999
Q ss_pred HHhhc--CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017638 311 GNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 311 ~nl~~--~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
.|||. .++.... -+-..++|.+-.....--+|++|.-|..++.-+.
T Consensus 276 ~n~~~lv~~~~~~~-~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 276 DNMCKLVEDPQVIA-PFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHTTCCCHHHHH-HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred cchhhhcCCHHHHh-hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 99986 3444444 3334788888887776558899988888777763
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.16 E-value=5.1e-05 Score=65.81 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=124.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
...+++.|.+++......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++-.. ......
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence 567888888888889999999999987754 788899999999999999999887 89999999999999884 334444
Q ss_pred Hh-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--------cC--ChHHHHHHhc--cccchhHHHH
Q 017638 156 VI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--------QG--ALIPLLAQLN--ERAKLSMLRN 222 (368)
Q Consensus 156 ~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--------~~--~i~~l~~~l~--~~~~~~~~~~ 222 (368)
++ ....|..+..++.+.+..|...|+.+|..++..++.....+.+ .| .+..++.+|. ...|.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 44 4457888888999888999999999999998766543333322 11 3778899994 2568899988
Q ss_pred HHHHHHHhhcCCC
Q 017638 223 ATWTLSNFCRGKP 235 (368)
Q Consensus 223 a~~~L~~l~~~~~ 235 (368)
+...+-.+...-|
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 8887777666543
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.04 E-value=0.00014 Score=72.79 Aligned_cols=271 Identities=14% Similarity=0.150 Sum_probs=185.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE-- 151 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~-- 151 (368)
..+..+++.+...+......++..+..++.+.... ..+..+++..|.+.+.+.. .. +.|+.++..++.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 34666777777655666677888888877643111 1222367888888888765 23 8899999999953321
Q ss_pred chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017638 152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
..+.++- +.+|.++..+.+....++..|-.++..|+..-+... + ...+|.|+..|...........++.++..|+
T Consensus 88 ~~e~~~~-~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 88 SVEPYIV-QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp TTHHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CcccchH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 2232222 578999999998889999988888888875433221 1 2368899999955557888999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017638 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (368)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 309 (368)
...|......+..++|.+.+.+.+..++|...|..++..+|.- +.+. ...+|.|+..+.+++. ...++..
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHH
Confidence 7643222334467888888888888899999998888888742 3332 2468888888877643 4556666
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCHHHhhh
Q 017638 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQV 366 (368)
Q Consensus 310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~i~~ 366 (368)
|+.-+.-.. .....+. =++|.|.+-|... ...+++.++-++.|+|. .+|..+..
T Consensus 235 l~~~tfv~~-v~~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~ 290 (986)
T 2iw3_A 235 LGATTFVAE-VTPATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAP 290 (986)
T ss_dssp HTTCCCCSC-CCHHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hhcCeeEee-ecchhHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhh
Confidence 665433222 1111111 1367788888877 88899999999999997 67766544
No 86
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.03 E-value=0.00019 Score=62.21 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=128.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 017638 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL 199 (368)
Q Consensus 120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~ 199 (368)
..+++-|.+.+ ...+..++.-|..+...+.+....++..+++..|+......+...+..++.+|++|..+....-..+-
T Consensus 121 ~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 44566666666 68889999999996655789999999999999999999999999999999999999877443323333
Q ss_pred hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhh-----------chHHHHHHhhc---CCCHHHHHHHH
Q 017638 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-----------PALPALAQLVH---SNDEEVLTDAC 265 (368)
Q Consensus 200 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~~~L~~lL~---~~d~~v~~~a~ 265 (368)
...+|..+..++ .+.+..+.+.++..|..++...+........ .-++.|+.+|+ +.|.+++.+++
T Consensus 200 ~~~fI~~lyslv-~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLC-ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 445677888888 4678999999999999999875322211110 12568889997 67899999999
Q ss_pred HHHHHhhcCCh--H----HHHHHHHcCChHHHHHhcCCC
Q 017638 266 WALSYLSDGTN--D----KIQAVIEAGVCPRLVELLGHP 298 (368)
Q Consensus 266 ~~l~~l~~~~~--~----~~~~~~~~~~~~~L~~lL~~~ 298 (368)
..|..+..+.+ + ..+.+-+.|+=..+.++|+..
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 98887765533 2 222233345555666667554
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.99 E-value=0.00016 Score=73.88 Aligned_cols=221 Identities=11% Similarity=0.112 Sum_probs=126.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC-----CChHH----HHHhhCCC---CHHHHHHHHHHHHHhhCCChhhH
Q 017638 128 REDYPQLQFEAAWALTNIASGTSENTKVVIDH-----GAVPI----FVKLLASP---SDDVREQAVWALGNVAGDSPRCR 195 (368)
Q Consensus 128 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~----L~~lL~~~---~~~v~~~a~~~L~nla~~~~~~~ 195 (368)
+++ ...+..|+.+++.++.+...... -... ...+. ++..|.++ ++.++..|+|+++.++..-+ .
T Consensus 416 ~~~-w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~ 491 (960)
T 1wa5_C 416 SKN-WKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K 491 (960)
T ss_dssp --C-HHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H
T ss_pred chh-HHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H
Confidence 344 68899999999999863211100 0000 12222 23334555 89999999999999986532 1
Q ss_pred HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-------CCChh----hhhchHHHHHHhhcCCC---HH--
Q 017638 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-------QPPFD----QVRPALPALAQLVHSND---EE-- 259 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-------~~~~~----~~~~~~~~L~~lL~~~d---~~-- 259 (368)
+.+. ..++.++..| .+++..++..|+++|.+++.... ..... ....+++.|..++.... +.
T Consensus 492 ~~l~--~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 492 AQLI--ELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp HHHH--HHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred HHHH--HHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 2222 2577788888 56688899999999999997421 11111 22455666666776541 11
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc----CC-CCcchHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHH
Q 017638 260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL----GH-PSPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYL 333 (368)
Q Consensus 260 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL----~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~l 333 (368)
....++.++..++....+....... .+++.|...+ ++ .++..+..++.+|+.++.. .++... -+...++|.+
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~ 646 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTF 646 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHH
Confidence 2234455555443211111111110 1233333333 33 3456777789999999876 333333 3344677888
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 334 LGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 334 ~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
..+|... ...+..++.-+++.+..
T Consensus 647 ~~iL~~~-~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 647 LTVFSED-IQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred HHHHHhh-hHhhHHHHHHHHHHHHH
Confidence 8888766 56677777777776653
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.91 E-value=0.00013 Score=74.55 Aligned_cols=225 Identities=10% Similarity=0.052 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCC--CCchHHH-HhcCcHHH----HHHhhcCC--CCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 85 SDDSSLQLEATTQFRKLLSIER--SPPIEEV-IQSGVVPR----FVEFLMRE--DYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~~--~~~~~~~-i~~g~i~~----Lv~lL~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
+.++..+..|+.++..++.+.. ....... -...+.+. ++..|.++ .++-+|..|+|+++.++..- ..+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH
Confidence 5667788888898888864310 1000000 00022222 33445555 14999999999999998842 1222
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhh-HHHHHh--cCChHHHHHHhccc----cchhHHH
Q 017638 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRC-RDLVLS--QGALIPLLAQLNER----AKLSMLR 221 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-------~~~-~~~i~~--~~~i~~l~~~l~~~----~~~~~~~ 221 (368)
. ..+++.++..|.+++..|+..|+++|.+++... +.+ ++.+.. ...++.|+.++... .......
T Consensus 494 -l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 -L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp -H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred -H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 2 246788899898888999999999999998631 111 222211 01344444555332 0111224
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhc
Q 017638 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL 295 (368)
Q Consensus 222 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-----~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL 295 (368)
.+..++..++...+.........+++.|...+. .+++.+...++.+++.++.. .++.... +...+++.+...|
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL 650 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHH
Confidence 555666655543222222233445555555543 23677888899999988865 3333222 3335667777777
Q ss_pred CCCCcchHHHHHHHHHHhh
Q 017638 296 GHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 296 ~~~~~~v~~~a~~~l~nl~ 314 (368)
.....+....++.+++.+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHH
Confidence 6655566777777776664
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00026 Score=61.18 Aligned_cols=191 Identities=13% Similarity=0.102 Sum_probs=126.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
.+| +-+.|.+.++..|..|+..+.+++........ +..+ -....+.+-..+.+.+ ..++..++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence 455 66789999999999999999998875322111 1111 1234566777887777 89999999999988753211
Q ss_pred --c-hH--HHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHH
Q 017638 152 --N-TK--VVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 225 (368)
Q Consensus 152 --~-~~--~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~ 225 (368)
. .. ...-..+++.|+. .|.+....++..+..++..++...... .. .++.++..+ .+.++.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN 161 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence 1 11 1112346777776 478888999999988887776432111 11 234455555 6778899888888
Q ss_pred HHHHhhcCCCC--CC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017638 226 TLSNFCRGKPQ--PP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 226 ~L~~l~~~~~~--~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
.|..+...... .. ...+..+++.+..+|.+.|+.||..|..++..+...
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 88877654211 11 223345677788889999999999999999887654
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.83 E-value=0.002 Score=65.70 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-----CCcchHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017638 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL 330 (368)
Q Consensus 256 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l 330 (368)
.++..++.++|+++.++.+..+....-.=..+++.|+.++.+ +...++..++|++|..+..-....+ .+. .++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L~-~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HHH-HHH
Confidence 578999999999999998765432222222467777777743 2344566788999987653221111 111 456
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017638 331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 331 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
..++..+..+ ++.++..|||++.++|.....
T Consensus 543 ~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 543 LKLFEFMHET-HEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence 6677777666 788999999999999975443
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.75 E-value=0.0014 Score=67.58 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--
Q 017638 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-- 297 (368)
Q Consensus 222 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-- 297 (368)
.+..+|..++...+. .....+.+.+...+. ..++..+..++++++.++..-.+....-.-..+++.+..+...
T Consensus 432 ~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~ 508 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR 508 (1049)
T ss_dssp HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence 445555555532211 122233344444454 3578899999999999986533321111112245555554322
Q ss_pred ---CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017638 298 ---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 298 ---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
+.+.++..+++++|.++..-....+ .+. .+++.++..+.++ ++.++..||+++.+++...+.
T Consensus 509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 2344555688999987643221111 222 4677788888887 899999999999999974433
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.71 E-value=0.00028 Score=72.09 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 017638 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~ 210 (368)
...+..|+++++.++.+-.......+. ..++.+..+.. ++++.++..++|+++.++..-....+.+. .+++.++..
T Consensus 478 w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~ 554 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRG 554 (971)
T ss_dssp CHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHH
Confidence 678999999999998864432211111 12332223322 35899999999999998742111001111 134555555
Q ss_pred hccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCC--hHHHHHHHH--
Q 017638 211 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGT--NDKIQAVIE-- 284 (368)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~--~~~~~~~~~-- 284 (368)
| . +.++..|++++.++|+.....-......++..+..++... +.+.+..+..+++.++..- ++....+..
T Consensus 555 l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll 630 (971)
T 2x1g_F 555 L-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV 630 (971)
T ss_dssp H-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred h-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5 2 6789999999999997532111122245555666677663 5788888999999887642 222222211
Q ss_pred cCChHHHHHhcCCC--CcchHHHHHHHHHHhh---cC--C-----------hHHHHHHHHcCChHHHHHhhCCC-CCccH
Q 017638 285 AGVCPRLVELLGHP--SPSVLIPALRTVGNIV---TG--D-----------DFQTQCIITYGALPYLLGLLTHS-HKKSI 345 (368)
Q Consensus 285 ~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~---~~--~-----------~~~~~~~~~~g~l~~l~~ll~~~-~~~~v 345 (368)
.-++..+..++... ++..+..+..+++.++ .+ . ......+ ...+++.+..++... .+..+
T Consensus 631 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v 709 (971)
T 2x1g_F 631 SPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDV 709 (971)
T ss_dssp HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHH
Confidence 11222333333333 2323333344444333 21 1 0011112 236788777777542 25689
Q ss_pred HHHHHHHHHHHhc
Q 017638 346 KKEACWTISNITA 358 (368)
Q Consensus 346 ~~~a~~~l~nl~~ 358 (368)
.+.+|+++++++.
T Consensus 710 ~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 710 LEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999775
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.67 E-value=0.0014 Score=66.77 Aligned_cols=219 Identities=13% Similarity=0.147 Sum_probs=130.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 017638 127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 203 (368)
Q Consensus 127 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~ 203 (368)
.+.+ ...+..++++++.++.+-.+.. ...++.++..+ .++++.++..++|+++.++..-.... ..+. ..
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HH
Confidence 3444 7889999999999998644321 12333444433 33578899999999999985321111 2222 47
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCh-HHHH
Q 017638 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN-DKIQ 280 (368)
Q Consensus 204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~-~~~~ 280 (368)
++.++..| .+ +.++..|+++|.++|...+..-......+++.+..++... +.+.+..+..+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888887 33 7889999999999997543222223345666666667653 57888999999999886542 3333
Q ss_pred HHHHcCChHHHHHhc----CCC-CcchHH---HHHHHHHHhhcCCh----------------------HHHHHHHHcCCh
Q 017638 281 AVIEAGVCPRLVELL----GHP-SPSVLI---PALRTVGNIVTGDD----------------------FQTQCIITYGAL 330 (368)
Q Consensus 281 ~~~~~~~~~~L~~lL----~~~-~~~v~~---~a~~~l~nl~~~~~----------------------~~~~~~~~~g~l 330 (368)
..++ .+++.+...+ ..+ +++.+. ..+.+|+.++..-. .....+. ..++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL-QQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH-HHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH-HHHH
Confidence 3322 2344444333 222 333333 45555555542210 0111122 2455
Q ss_pred HHHHHhhCCC-CCccHHHHHHHHHHHHhc
Q 017638 331 PYLLGLLTHS-HKKSIKKEACWTISNITA 358 (368)
Q Consensus 331 ~~l~~ll~~~-~~~~v~~~a~~~l~nl~~ 358 (368)
+.+..++... .++.+.+.+|.+++.++.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 6666665431 256899999999999765
No 94
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.65 E-value=0.00076 Score=58.46 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=149.4
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017638 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~----~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
+...+.+..|+..|..-+-+.+..+..+++++...... ..+.+.. -.+.+..++....++++.-.+...|...+
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 44457888889988888889999999999999865432 3344444 24444555545556666666666666666
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCCCCcchHHHHHH
Q 017638 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPALR 308 (368)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~a~~ 308 (368)
+...........+.+-.+.+.++.++-+|..+|..++.-+..........++.. .++.....+|.+++.-.+..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 653322333334555667788888999999999999999877666665566554 35777888899999999999999
Q ss_pred HHHHhhcCCh--HHH-HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCHHHhhhc
Q 017638 309 TVGNIVTGDD--FQT-QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQVM 367 (368)
Q Consensus 309 ~l~nl~~~~~--~~~-~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~i~~v 367 (368)
.||.+..... ... .++-+..-+..++.+|.+. +..++-+|-.+.--+++ ..+..|..|
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~I 294 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDI 294 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHH
Confidence 9999986532 222 3333346689999999999 99999999999988887 355555443
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.59 E-value=0.00015 Score=66.91 Aligned_cols=218 Identities=17% Similarity=0.151 Sum_probs=144.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc-hHHHHhcCcHHHHHHhhc--C-C----C--CHHHHHHHHHHHH
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-IEEVIQSGVVPRFVEFLM--R-E----D--YPQLQFEAAWALT 143 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~-~~~~i~~g~i~~Lv~lL~--~-~----~--~~~v~~~a~~~L~ 143 (368)
+-...|+..|.++.++.|.-|+..||.++....... .....+..+.-.|+.+|. . + | -..||+.|+.+|+
T Consensus 174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 346778889999999999999999999987541100 000111133444443332 1 1 1 1479999999999
Q ss_pred HHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHH
Q 017638 144 NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNA 223 (368)
Q Consensus 144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a 223 (368)
.+ ..-+.. ..++..++..+..+..+++..++-.|..+ .+ -..+ -.++++.++.-| .+.|.+++..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D--LL~~---Ld~Vv~aVL~GL-~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE--FVED---KDGLCRKLVSLL-SSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG--GCCC---HHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH--HHHH---HHHHHHHHHhhc-CCcccHHHHHH
Confidence 99 644443 23445555555778899999999999888 11 1111 123567777777 77789999999
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-C-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcc
Q 017638 224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-D-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS 301 (368)
Q Consensus 224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 301 (368)
+.+|..++ .+ ..+..++..+...|.+- | .......+..|+.|+..+.. .-.....+|.|.++|.|+-+.
T Consensus 320 AetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 320 AELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHH
T ss_pred HHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHH
Confidence 99999888 12 23445666777766543 3 33345556667777655431 111237899999999999999
Q ss_pred hHHHHHHHHHHhh
Q 017638 302 VLIPALRTVGNIV 314 (368)
Q Consensus 302 v~~~a~~~l~nl~ 314 (368)
||..++.++..+.
T Consensus 391 VR~AVL~TL~tfL 403 (800)
T 3oc3_A 391 VRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998887
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0036 Score=53.91 Aligned_cols=188 Identities=12% Similarity=0.113 Sum_probs=124.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch--HHHh-hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---h
Q 017638 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENT--KVVI-DH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR---C 194 (368)
Q Consensus 122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~-~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~---~ 194 (368)
|-+-|.+.+ ...|.+|+..|..+....+... .... .. ...+.+...+.+.+..++..++.++..++..... .
T Consensus 14 l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 456677777 8999999999988776433221 1111 12 3456677788999999999999999988743210 1
Q ss_pred HH--HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017638 195 RD--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 195 ~~--~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
+. ...-..+++.|+.....+....++..+..++..++..... ...+++.+...+.+.++.++..++..|..+.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11 1111225666776522566778888888888887754311 1235677888889999999999999998876
Q ss_pred cC--ChH-HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017638 273 DG--TND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 273 ~~--~~~-~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
.. ... .....+ ..+++.+..+|.+.++.||..|..+++.+-..
T Consensus 168 ~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 32 110 011111 13466788889999999999999999988653
No 97
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.45 E-value=0.0017 Score=55.03 Aligned_cols=177 Identities=15% Similarity=0.061 Sum_probs=116.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh---ccccchhHHHHHHHHHHHhh----cCCC
Q 017638 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL---NERAKLSMLRNATWTLSNFC----RGKP 235 (368)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l---~~~~~~~~~~~a~~~L~~l~----~~~~ 235 (368)
+.+...|.+.+..-+..++..|.......+. .+.. .++.+++-+ ..+.+..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555556666666666666665543332 2222 233333322 13567777777777766653 3222
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017638 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
.-.......++|.|+.-+.+....++..+-.++..++.. ++. .+++.++.-+.+.++..|..++..++.+.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 222222356889999999888888988888877666532 222 24677788888999999999999999997
Q ss_pred cCChHHHHHHHHcCCh---HHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 315 TGDDFQTQCIITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 315 ~~~~~~~~~~~~~g~l---~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
...... ....+ +.+..++.+. +..||..|.-++..+-.
T Consensus 196 ~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 533211 23568 9999999999 99999999999987665
No 98
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.44 E-value=0.0031 Score=64.46 Aligned_cols=169 Identities=11% Similarity=0.114 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH
Q 017638 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL 208 (368)
Q Consensus 134 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~ 208 (368)
.|..+..+|..++....+ .++. -+++.+-..+.+ .+...++.++++++.++....... ...++.++
T Consensus 437 ~R~~~~~~l~~~~~~~~~---~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLND---YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTCTT---HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH---HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHH
Confidence 556667777776653221 1111 112333333332 567889999999999987643211 12344444
Q ss_pred HHh---cc-ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017638 209 AQL---NE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 209 ~~l---~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
.++ .. +.++.++..++|+++.++...... ......+++.|+..|. +.++..|++++.+++..........+
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~- 582 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA- 582 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence 433 21 347889999999999999764221 2455678888888882 78999999999999965544333222
Q ss_pred cCChHHHHHhcCC--CCcchHHHHHHHHHHhhcC
Q 017638 285 AGVCPRLVELLGH--PSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 285 ~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~ 316 (368)
..++..+..++.. .+...+..++.+++.++..
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 2466677777765 3567889999999999764
No 99
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.43 E-value=0.021 Score=49.51 Aligned_cols=243 Identities=12% Similarity=0.122 Sum_probs=166.3
Q ss_pred HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch----HHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017638 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT----KVVID-HGAVPIFVKLLASPSDDVREQAVWALG 185 (368)
Q Consensus 111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~ 185 (368)
+++...+++..|+..|..=+ -+.|..++.++.++.......+ +.+.. ..++..|+.-.. ++++.-.|...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHH
Confidence 35667788999999999888 7999999999999987544322 22322 123333333333 4555666666777
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh----hhchHHHHHHhhcCCCHHHH
Q 017638 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ----VRPALPALAQLVHSNDEEVL 261 (368)
Q Consensus 186 nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----~~~~~~~L~~lL~~~d~~v~ 261 (368)
..+.+. .+...++..+.+-.+.+.+ +.++=++...|..++..+...-....... ...++.....+|.+++--.+
T Consensus 149 ecir~e-~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 149 ECIRHE-PLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHTSH-HHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhH-HHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 777665 4566777777778888888 77788888899988887665421111111 13566778889999999999
Q ss_pred HHHHHHHHHhhcCCh--HH-HHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCC---hHHHHHHHHc--CChHHH
Q 017638 262 TDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD---DFQTQCIITY--GALPYL 333 (368)
Q Consensus 262 ~~a~~~l~~l~~~~~--~~-~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~---~~~~~~~~~~--g~l~~l 333 (368)
..++..|+.+..... .. ...+-+..-+..++.+|++.+..++..|..+.--+++.+ +.....+... .++..|
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl 306 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL 306 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999986532 22 223333456888999999999999999999999888754 2333333332 567777
Q ss_pred HHhhCCC-CCccHHHHHHHHHHHHhc
Q 017638 334 LGLLTHS-HKKSIKKEACWTISNITA 358 (368)
Q Consensus 334 ~~ll~~~-~~~~v~~~a~~~l~nl~~ 358 (368)
..+..+. ++.....+=...+..|..
T Consensus 307 ~~f~~d~~eDeqF~dEK~~lI~~I~~ 332 (341)
T 1upk_A 307 SKFQNDRTEDEQFNDEKTYLVKQIRD 332 (341)
T ss_dssp HHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcchhhHHHHHHHHHHHHHh
Confidence 7776655 466677776666666554
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0011 Score=56.30 Aligned_cols=176 Identities=11% Similarity=0.081 Sum_probs=116.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH----hhCCCCHHHHHHHHHHHHHhh----CCCh
Q 017638 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK----LLASPSDDVREQAVWALGNVA----GDSP 192 (368)
Q Consensus 121 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~----lL~~~~~~v~~~a~~~L~nla----~~~~ 192 (368)
.+...|-+.+ ..-+..++..|......++ ..++. .++.++. -+.+.+..+...++.+|..+. ..+.
T Consensus 50 ~~~~~lfs~d-~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 50 SLMSQLFHKD-FKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHTCSC-HHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444455555 6677777777776554332 22221 2333333 334778888888888887764 2221
Q ss_pred hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017638 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
...+.-.. -++|.|+..+ .+..+.++..+-.++..++...| ...+++.+...+.+.++..+..++..+.++.
T Consensus 124 ~~~~~ea~-~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 124 PMSQEEVS-AFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCHHHHH-HHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchHHHHH-HHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 22222111 2688999988 67777888777777766664211 1347788888899999999999999999987
Q ss_pred cCChHHHHHHHHcCCh---HHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 273 DGTNDKIQAVIEAGVC---PRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~---~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
....-. ....+ +.+..++.+++..+|..|+.++..+-.
T Consensus 196 ~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 431111 23468 999999999999999999999987643
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.33 E-value=0.0069 Score=49.85 Aligned_cols=144 Identities=17% Similarity=0.062 Sum_probs=106.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhHH
Q 017638 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSPRCRD 196 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~-~~~~~~~ 196 (368)
++.+-.+..++. .++|..|+..|+.. .. . ..+++.+.. +-.+++-.|++.++.+++.++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 566667777777 79999999998877 31 1 124566666 5567889999999999999985 44431
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 017638 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~ 276 (368)
.++.+.... .+++..+++.++..+.-.|.. +. .......++|.|..+..+++..|+....|.|..++..++
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~~-~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-PY-FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-TT-TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-ch-hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 456666666 889999999998877654543 21 122224578888888888899999999999999999988
Q ss_pred HHHHHHHH
Q 017638 277 DKIQAVIE 284 (368)
Q Consensus 277 ~~~~~~~~ 284 (368)
+.+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88666554
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.26 E-value=0.001 Score=67.82 Aligned_cols=141 Identities=14% Similarity=0.224 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHhhCCChh--hHHHHHhcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 017638 172 PSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAQLNE----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 245 (368)
Q Consensus 172 ~~~~v~~~a~~~L~nla~~~~~--~~~~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 245 (368)
.+...++.++|++|.|++.-.. ....+.. +++.|+.++.. ++...++..++|+++.+++.-. ........+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLRTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 5789999999999999975432 2222222 67778887732 2233455578899998887641 122345677
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH----------cCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE----------AGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 246 ~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----------~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
+..|+..+..+++.++..||+++.++|.... ..+.. ..++..+...+..-++.-+..+..+++.++.
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c~---~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7778888877789999999999999996422 22221 1233344444444566777899999999987
Q ss_pred CCh
Q 017638 316 GDD 318 (368)
Q Consensus 316 ~~~ 318 (368)
..+
T Consensus 619 ~~~ 621 (1023)
T 4hat_C 619 EER 621 (1023)
T ss_dssp TCC
T ss_pred hCC
Confidence 543
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.25 E-value=0.0089 Score=61.59 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=93.0
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCCC
Q 017638 163 PIFVKLLA--SPSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNE----RAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 163 ~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~-~~~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
+.+-..+. +.+...++.++++++.+++..... ...+.. ..++.++.+... ++.+-++..++|+++.++....
T Consensus 454 ~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 44444554 357889999999999998653221 111111 133344443211 1334444468999998886531
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH----------HcCChHHHHHhcCCCCcchHHH
Q 017638 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI----------EAGVCPRLVELLGHPSPSVLIP 305 (368)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~----------~~~~~~~L~~lL~~~~~~v~~~ 305 (368)
. .......+++.++..+.++++.|+..||+++.+++..... .+. -..++..+..++...+..-...
T Consensus 533 ~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~---~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 533 A-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp H-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 1 2245567888888888888899999999999999964222 221 1134444555555555555677
Q ss_pred HHHHHHHhhcCC
Q 017638 306 ALRTVGNIVTGD 317 (368)
Q Consensus 306 a~~~l~nl~~~~ 317 (368)
.+.+++.++...
T Consensus 609 ~~eai~~ii~~~ 620 (1049)
T 3m1i_C 609 FYKACGIIISEE 620 (1049)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC
Confidence 788888886543
No 104
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.18 E-value=0.0017 Score=66.16 Aligned_cols=266 Identities=10% Similarity=0.007 Sum_probs=143.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--chHHHhhCCC
Q 017638 84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVIDHGA 161 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~ 161 (368)
.+.++.....++.++...++ -.+...++..++++.+..+|.. ++++..|+.||..+.+.... .+..++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 34778888999999999985 3466778888899999999975 78999999999999875432 2222222101
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCh-----hhHHHH--HhcCChHHHHHHhccccchhHHHHHHHH
Q 017638 162 VPIFVKLLA--SPSDDVREQAVWALGNVA------GDSP-----RCRDLV--LSQGALIPLLAQLNERAKLSMLRNATWT 226 (368)
Q Consensus 162 i~~L~~lL~--~~~~~v~~~a~~~L~nla------~~~~-----~~~~~i--~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 226 (368)
+...+.-+. .++.++.+..+..+..++ ...+ +.+... .-.+.++.++..+ .+++.++...++..
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 111122122 356666654444443332 1111 111100 1123677888888 55666776666666
Q ss_pred HHHhhcCC---CC--CChhhh----hchHHHHHHhhcCC-----------C-----HHHHHHHHHHHHHhhcCChHHH-H
Q 017638 227 LSNFCRGK---PQ--PPFDQV----RPALPALAQLVHSN-----------D-----EEVLTDACWALSYLSDGTNDKI-Q 280 (368)
Q Consensus 227 L~~l~~~~---~~--~~~~~~----~~~~~~L~~lL~~~-----------d-----~~v~~~a~~~l~~l~~~~~~~~-~ 280 (368)
+..+.... +. ...... ..+++.++.-+..+ + .+.|......+..++.-.++.. .
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 66555321 11 111222 33444444433321 1 1345555533323332222222 2
Q ss_pred HHHHcCChHHHHHhcC---CCCcchHHHHHHHHHHhhcCChHHHHHHH-Hc----CChHHHHHhhC-----CCCCccHHH
Q 017638 281 AVIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCII-TY----GALPYLLGLLT-----HSHKKSIKK 347 (368)
Q Consensus 281 ~~~~~~~~~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~----g~l~~l~~ll~-----~~~~~~v~~ 347 (368)
.+.+ -+.+.+...+. +.++..++.++.+++.++.+.......+. +. .+++.+..++. .+ ++.++.
T Consensus 436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 1111 11222333342 34588899999999999876542211110 00 23455555554 44 789999
Q ss_pred HHHHHHHHHhc
Q 017638 348 EACWTISNITA 358 (368)
Q Consensus 348 ~a~~~l~nl~~ 358 (368)
.++|+++..+.
T Consensus 514 ~~~~~l~rys~ 524 (980)
T 3ibv_A 514 LYMEILVRYAS 524 (980)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 105
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.18 E-value=0.00019 Score=60.45 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017638 289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
+.|..++.++++.+|..+...++ .+.+..+ .++ ++.||..|...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 45666677777777777766543 2444445 666 888888876543
No 106
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.14 E-value=0.003 Score=64.45 Aligned_cols=157 Identities=8% Similarity=0.074 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 017638 170 ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP 247 (368)
Q Consensus 170 ~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 247 (368)
.+.+...++.++++++.++...... ....++.++..+. ..+++.++..++|+++.++..-.. .......+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 5567889999999999999764321 1123455555442 224678999999999999875311 1245678889
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHHHHhhcCCh-HHHHHH
Q 017638 248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDD-FQTQCI 324 (368)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~~ 324 (368)
.++..|++ +.|+..|++++.+++..........+ ..++..+..++.. -+...+..++.+++.++...+ +.....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99888854 89999999999999964322111111 1344555555554 246788999999999986543 333333
Q ss_pred HHcCChHHHHHh
Q 017638 325 ITYGALPYLLGL 336 (368)
Q Consensus 325 ~~~g~l~~l~~l 336 (368)
++ .+++.+...
T Consensus 610 ~~-~l~~~l~~~ 620 (963)
T 2x19_B 610 LH-SLISPYIQQ 620 (963)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 33 344444433
No 107
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.06 E-value=0.014 Score=59.50 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHH-hhCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 017638 132 PQLQFEAAWALTNIASGTSENTKVV-IDHG----AVPIFVKLLA-----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~-~~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~ 201 (368)
....+.++.+|+.++.+-......+ -... .++.+..++. .+++.++..++|+++..+..-.. ..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~ 530 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES 530 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 6778889999999988644322211 0112 3455555554 57799999999999998754221 22
Q ss_pred CChHHHHHHhcc-----ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-----CC--------------
Q 017638 202 GALIPLLAQLNE-----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-----ND-------------- 257 (368)
Q Consensus 202 ~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-----~d-------------- 257 (368)
..+++++..+.. +++..++..++.++.++|+.....-......++..+..+|.. .+
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 357777776644 456789999999999999875432222334455555555542 11
Q ss_pred --HHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHH----HHhcCCCC-c-c---hHHHHHHHHHHhhcCChHH---
Q 017638 258 --EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRL----VELLGHPS-P-S---VLIPALRTVGNIVTGDDFQ--- 320 (368)
Q Consensus 258 --~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L----~~lL~~~~-~-~---v~~~a~~~l~nl~~~~~~~--- 320 (368)
.+-+.+...+++.++.. +.+.....++ .+++.+ -..+.... . . -....+.++|+++.+-+..
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~ 689 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE 689 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence 11345566666666522 3333332322 233333 33332221 1 1 2235677788888654211
Q ss_pred ---HHHHHHcCChHHHHHhhC--CCCCccHHHHHHHHHHHHhcCCHHHh
Q 017638 321 ---TQCIITYGALPYLLGLLT--HSHKKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 321 ---~~~~~~~g~l~~l~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
...++. .+.+.+...+. .. +..++..++.++..+...-..++
T Consensus 690 ~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~ 736 (980)
T 3ibv_A 690 EVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDM 736 (980)
T ss_dssp CCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHH
T ss_pred CCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhH
Confidence 122222 35556656665 33 67899999999999987555444
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.75 E-value=0.16 Score=51.98 Aligned_cols=102 Identities=16% Similarity=0.250 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHhhcCChHH-H-HHHHHcCChHHHHHhcCCC-----CcchHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 017638 257 DEEVLTDACWALSYLSDGTNDK-I-QAVIEAGVCPRLVELLGHP-----SPSVLIPALRTVGNIVTGDDFQTQCIITYGA 329 (368)
Q Consensus 257 d~~v~~~a~~~l~~l~~~~~~~-~-~~~~~~~~~~~L~~lL~~~-----~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~ 329 (368)
++.....+||+++.++..-.+. - ..+. .+++.|+.+..++ ...++...++++|..+.--..+.+ +++ .+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~L~-~v 567 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-FLK-TV 567 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-HHH-HH
Confidence 5889999999999998443321 1 2222 3566666666443 234556667888886543221111 222 45
Q ss_pred hHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017638 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 330 l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
+..++..+.++ ++.++..||-++..|+..+..+
T Consensus 568 l~~L~~~m~~~-~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 568 VNKLFEFMHET-HDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHTTCC-STTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877 8999999999999999865554
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.65 E-value=0.0059 Score=56.53 Aligned_cols=214 Identities=13% Similarity=0.089 Sum_probs=137.2
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC----C------C---CHHHHHHHHHHH
Q 017638 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA----S------P---SDDVREQAVWAL 184 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~------~---~~~v~~~a~~~L 184 (368)
+...|+.-|-++. .++|.-|+-+|..+..............+. +..++++. + + -..|||.|+.+|
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 4566666667777 899999999999987532110000011111 22332221 1 1 258999999999
Q ss_pred HHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHH
Q 017638 185 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDA 264 (368)
Q Consensus 185 ~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a 264 (368)
|.+ ..-+.- ..++..++..+ ..+..+++..++-.|-.+..--. ...++++.++..|.+.|.+|+..|
T Consensus 253 GaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 253 SRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHH
Confidence 999 554432 23444444433 55678888888888888821111 156788999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCC
Q 017638 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK 342 (368)
Q Consensus 265 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~ 342 (368)
+.+|.-++ . ++....+ +..+-..|.+ +=.......+..|+.+++.+... -.+...+|.|..++.|+ -
T Consensus 320 AetLiPIA-~-p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-I 388 (800)
T 3oc3_A 320 AELLCHFP-I-TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-V 388 (800)
T ss_dssp HHHHTTSC-C-SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-S
T ss_pred HHHhhhhc-c-hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-c
Confidence 99999999 2 3333333 3333333322 12334566677777777655311 11237899999999999 9
Q ss_pred ccHHHHHHHHHHHHh
Q 017638 343 KSIKKEACWTISNIT 357 (368)
Q Consensus 343 ~~v~~~a~~~l~nl~ 357 (368)
..||+.+..++..+.
T Consensus 389 TSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 389 PEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887665
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.57 E-value=0.018 Score=47.45 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=99.4
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CChHHHHHH
Q 017638 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSD-GTNDKIQAV 282 (368)
Q Consensus 205 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-lL~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~ 282 (368)
..+...|.+++..+++..|+.+|..+ . .....++.+.. +-..++..|+.-++.++..++. ..++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence 34455554777778998999988776 2 11357777777 4456678999999999998884 33322
Q ss_pred HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017638 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
.++.+.....+++..+|..|...+--.+.... .... -+++.+-.+..++ +..||+..+|.|..++..+
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhC
Confidence 46778889999999999988877543332211 1111 2466666666777 9999999999999999999
Q ss_pred HHHhhhc
Q 017638 361 RDQIQVM 367 (368)
Q Consensus 361 ~~~i~~v 367 (368)
|+-+..+
T Consensus 210 Pd~V~~~ 216 (240)
T 3l9t_A 210 PDLVKIE 216 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877653
No 111
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.41 E-value=0.12 Score=44.86 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=104.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 017638 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG----AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR 193 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~ 193 (368)
+..+.+++..+. +.+.-++.++.-.+. .+.....+.+.+ ++..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 456666666554 455566666655554 233333332221 22233444443 346678899999999998754
Q ss_pred hHHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHH
Q 017638 194 CRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWAL 268 (368)
Q Consensus 194 ~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l 268 (368)
.++.+.. ....++..+. .+.+..++..++..+.|++-.. ..........++..+..++. ..|++....++-+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6666665 2455555543 3457889999999999988653 11222223345555556664 35889999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhcCC
Q 017638 269 SYLSDGTNDKIQAVIEAGVCPRLVELLGH 297 (368)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 297 (368)
++|...+.+..+..-.-|+-..+-++.+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998765554433334555555555544
No 112
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.19 E-value=0.55 Score=42.14 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=101.9
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHh
Q 017638 78 AMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIA 146 (368)
Q Consensus 78 ~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~ 146 (368)
.++..|.++. .......+..|+.-+..++..-++.++ .+++..|+.+|.. ..+...+..++.||..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 4455555442 333345667777666544223345666 6678888888852 112578899999999998
Q ss_pred cCCCcchHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhcc
Q 017638 147 SGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNE 213 (368)
Q Consensus 147 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~-~~~i~----------~~~~i~~l~~~l~~ 213 (368)
.. ......++. ...+..|...|.++++.++..++..|+.+|.... .. ...++ +..-+.+++..|..
T Consensus 149 N~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 149 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp SS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred cc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 73 444455554 5688999999999999999999999999986542 21 23332 23346777888854
Q ss_pred ccchhHHHHHHHHHHHhhcCCC
Q 017638 214 RAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 214 ~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
..+.+....++..+-.+....+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHHHHHHHHcCCC
Confidence 4566776666666666666543
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.15 E-value=0.037 Score=50.33 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 017638 172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251 (368)
Q Consensus 172 ~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ 251 (368)
.+...+..|+..+.....+-|...+. ++..+++++ .+.|..++..|...|..+|.+ ..+..+..+|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 46889999999999999988887665 688899999 888999999999999999976 336678899999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 252 lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
+|+++++.-...+-++|..+...++.. .+..+...+..++..+|+.++..|..
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999999877777777777776554322 23333333333456777777777754
No 114
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.11 E-value=0.11 Score=45.29 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=95.1
Q ss_pred HHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHH
Q 017638 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLT 262 (368)
Q Consensus 184 L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~ 262 (368)
|.|+.-++...-+-++..+++..+...+ +.++.++.+..+..|...+..+ ..........+|.++..+. +++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3444444455668888999999999999 8889999999999999988764 2222334678898888875 67889999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCC------CcchHHHHHHHHHH
Q 017638 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHP------SPSVLIPALRTVGN 312 (368)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~------~~~v~~~a~~~l~n 312 (368)
...+.|+|...+.....+..+..|.+..|.... +++ +..-+..||.+++|
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 999999999998877778888889999888776 322 22334555555554
No 115
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.92 E-value=0.23 Score=41.27 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=87.3
Q ss_pred HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCC
Q 017638 93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIASGTSENTKVVID-HGA 161 (368)
Q Consensus 93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~ 161 (368)
..+..|+..+..++..-++.+ ..+++..|+.+|.. + .+...+.+++.||..+.. +....+.++. .++
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence 345555555544322223455 46677778777753 1 125788999999999887 3444555554 567
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017638 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~-~~~i~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
+..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+....+.+....++..+-.
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~ 177 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 177 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999988886542 12 23332 222355566666444455665555555555
Q ss_pred hhcCC
Q 017638 230 FCRGK 234 (368)
Q Consensus 230 l~~~~ 234 (368)
+....
T Consensus 178 li~~~ 182 (233)
T 2f31_A 178 LITPA 182 (233)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 55553
No 116
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.72 E-value=0.49 Score=39.33 Aligned_cols=194 Identities=15% Similarity=0.154 Sum_probs=125.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHH-HH-hcCcHHHHHHhhcC-------CC-CHH---HHHHHHHHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEE-VI-QSGVVPRFVEFLMR-------ED-YPQ---LQFEAAWAL 142 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~-~i-~~g~i~~Lv~lL~~-------~~-~~~---v~~~a~~~L 142 (368)
+..++..|.. ++.+..|+..|.+--. .-+.... +. ..|.+..|++=+-+ +. .+. -.-.|+..|
T Consensus 5 i~qli~~L~~--p~~Re~AL~eLsk~Re--~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 5 IYQWINELSS--PETRENALLELSKKRE--SVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHTSS--TTTHHHHHHHHHHHTT--TCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--chhHHHHHHHHHHhhh--ccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 4455555554 4468888888876522 1233333 33 45667766543321 11 011 224445556
Q ss_pred HHHhcCCCcchHHHhhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhccccc
Q 017638 143 TNIASGTSENTKVVIDHGAVPIFVKLLASP-----SDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAK 216 (368)
Q Consensus 143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~nla~-~~~~~~~~i~~~~~i~~l~~~l~~~~~ 216 (368)
.-+|+ .++.+..++++.+.-.|..+|... .+.++-.++.++|.+.. ++++.-..+++.+++|..++.+ ..++
T Consensus 81 QcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs 158 (268)
T 2fv2_A 81 QCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS 158 (268)
T ss_dssp HHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred HHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence 66777 589999999998777777777642 36788899999999884 5677888889999999999999 6666
Q ss_pred hhHHHHHHHHHHHhhcCCCC--------CChhhhhchHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCC
Q 017638 217 LSMLRNATWTLSNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 217 ~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~~~~L~-~lL~~~d~~v~~~a~~~l~~l~~~~ 275 (368)
+--+.-|++.+..+..++.. ..+..+..++..++ .+...+++.+...+++|-..|++++
T Consensus 159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 66677788887776655311 11222233343333 3345667888999999988888764
No 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.72 E-value=0.0085 Score=50.27 Aligned_cols=46 Identities=22% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017638 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
.+..++.++++.+|..++..+ ..+.|..++.++ ++.||..++..++
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~-d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDP-DWTVRLAAVEHAS 219 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCS-SHHHHHHHHHHSC
T ss_pred HHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence 344555677777777666532 235677888888 9999999988754
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.65 E-value=0.66 Score=47.65 Aligned_cols=242 Identities=14% Similarity=0.108 Sum_probs=137.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCc---HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017638 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV---VPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~---i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
.+-.|++.+..-+.+........+..- ...+....+.+...|- +..+.+++.+.. ... .+|+++|...... ..
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~-~~ 387 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQ-LTS-AEATQIVASTLSN-QQ 387 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHHHT-CC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCH-HHHHHHHHHhhcc-CC
Confidence 456667777766654443333332210 0000111223333443 444566666554 222 3355555543321 11
Q ss_pred chHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhc---cccchhHH
Q 017638 152 NTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLN---ERAKLSML 220 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~----~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~ 220 (368)
-.. ..+..+..++.+ .++.+++.++.+++++.. +.+.+. ...++++.+.+. ...+.+-.
T Consensus 388 Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~ 457 (1056)
T 1lsh_A 388 ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEI 457 (1056)
T ss_dssp CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHH
T ss_pred CCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHH
Confidence 111 245566677765 467788889999988863 222221 123455555442 33456667
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017638 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293 (368)
Q Consensus 221 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 293 (368)
..++.+|.|+... ..++.|.+++.. ....++..|+++|..++...+... -+.+++
T Consensus 458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~ 519 (1056)
T 1lsh_A 458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLP 519 (1056)
T ss_dssp HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHH
T ss_pred HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHH
Confidence 8889999998853 467778887742 135788999999999997765553 344566
Q ss_pred hc--CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 294 LL--GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 294 lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+. ...++++|..|+.+|-.-. ++ . ..+..+...+..+.+..|.....-.|.+++.
T Consensus 520 i~~n~~e~~EvRiaA~~~Lm~t~--P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 520 IFLNVAIKSELRIRSCIVFFESK--PS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHTC--CC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCChHHHHHHHHHHHHHC--cC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 66 4457889999888774322 22 1 1244455556554466677777677777775
No 119
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.55 E-value=0.44 Score=48.76 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=138.1
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--
Q 017638 72 KLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-- 149 (368)
Q Consensus 72 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-- 149 (368)
+++.+..++..+.+++.+.+..|-..|..+-. ++ +....+..+|..+.++.+|.-|+..|.+.....
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~ 94 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HP--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWK 94 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CS--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---Cc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 34578888988888888888888888876522 22 224445555655555899999999999976521
Q ss_pred --CcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHH
Q 017638 150 --SENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLR 221 (368)
Q Consensus 150 --~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~ 221 (368)
+......+...++..+...-.+ .++.++.+.+.+++.|+... |. ...++++.++..+. .++....
T Consensus 95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-----~Wp~fi~dLv~~~~--~~~~~~~ 167 (1073)
T 3gjx_A 95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-----HWPTFISDIVGASR--TSESLCQ 167 (1073)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHH--HCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-----hccHHHHHHHHHhC--CCHHHHH
Confidence 2222333444455555554433 24677788888888887432 11 02335666666662 2334455
Q ss_pred HHHHHHHHhhcCCCCC-----Ch-------hhh----hchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017638 222 NATWTLSNFCRGKPQP-----PF-------DQV----RPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 222 ~a~~~L~~l~~~~~~~-----~~-------~~~----~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
..+.+|..|++.-... .. ..+ ..+++.+..+|. ..++++...++.++..+..--+ ...+++
T Consensus 168 ~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~ 245 (1073)
T 3gjx_A 168 NNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFE 245 (1073)
T ss_dssp HHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhcc
Confidence 6677777766541100 00 011 123333444443 4568888889999999887643 346778
Q ss_pred cCChHHH-HHhcCCCCcchHHHHHHHHHHhhcC
Q 017638 285 AGVCPRL-VELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 285 ~~~~~~L-~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
.++++.+ ..+|. ++..+..|+.||..++..
T Consensus 246 ~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 246 TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence 8889888 47774 568999999999999864
No 120
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.27 E-value=0.19 Score=41.68 Aligned_cols=140 Identities=11% Similarity=0.159 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCC----HHHHHHHHHHHHHHhc-CCCcchHHHhhCCChHHHH
Q 017638 92 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY----PQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFV 166 (368)
Q Consensus 92 ~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~ 166 (368)
..|+..|.-+++ .++....+++..+--.|..+|+..+. .-+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus 74 cnaLaLlQcvAs--hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVAS--HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHH--CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHc--CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 344555555555 26667788999988888899876542 4688999999999886 4566777888899999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--------cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--------QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 167 ~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
+.++.++.--+..|.+++..|..++... ..+.. ...+..++..+...++..+.++++.|...|+.+.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999997665332 22211 1134445555556778889999999999998763
No 121
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.03 E-value=0.18 Score=43.60 Aligned_cols=151 Identities=12% Similarity=0.098 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hc----CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QS----GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~----g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 150 (368)
+..+.+.+..+ .+.++-++..+|-.+. .+...... +. .++..++..+..+..+..+.-+++++.|+... +
T Consensus 105 l~~l~kil~WP-~~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~ 179 (304)
T 3ebb_A 105 LQILWKAINCP-EDIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-Q 179 (304)
T ss_dssp HHHHHHHHTSC-TTTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-H
T ss_pred HHHHHHHHcCC-HHhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-c
Confidence 34444444322 2345556666664432 23332222 21 12334445555444477899999999999984 5
Q ss_pred cchHHHhhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHhcCChHHHHHHhccccchhHHHHHHHH
Q 017638 151 ENTKVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--RDLVLSQGALIPLLAQLNERAKLSMLRNATWT 226 (368)
Q Consensus 151 ~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~--~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 226 (368)
..+..+... .+++.+...+.+++..++..++.++.|++...... .+.... .+..+..++....+.+....++-+
T Consensus 180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--CLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--HHHHHHHHHhccCCHHHHHHHHHH
Confidence 556555542 24555565666778999999999999998421100 011111 344555556555688999999999
Q ss_pred HHHhhcC
Q 017638 227 LSNFCRG 233 (368)
Q Consensus 227 L~~l~~~ 233 (368)
|.+|...
T Consensus 258 LGtL~~~ 264 (304)
T 3ebb_A 258 LGTLISD 264 (304)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999965
No 122
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.72 E-value=1.5 Score=39.35 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=92.2
Q ss_pred HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCC
Q 017638 93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIASGTSENTKVVID-HGA 161 (368)
Q Consensus 93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~ 161 (368)
..+..|+..+..++..-++.+. .+++..|+.+|.. . .+...+..++.||..+... ......++. .++
T Consensus 24 ~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~ 101 (386)
T 2bnx_A 24 SCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEG 101 (386)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSH
T ss_pred HHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHH
Confidence 3455555555543222234554 5667777777752 1 1257889999999999873 444444444 568
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017638 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~-~~~i~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
+..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+.+++..+..+.+.+....++..+-.
T Consensus 102 i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~ 181 (386)
T 2bnx_A 102 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 181 (386)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8999999999999999999999988886442 22 23222 233466788888556677777776666666
Q ss_pred hhcCCC
Q 017638 230 FCRGKP 235 (368)
Q Consensus 230 l~~~~~ 235 (368)
+....+
T Consensus 182 lv~~~~ 187 (386)
T 2bnx_A 182 LITPAE 187 (386)
T ss_dssp HHTTCS
T ss_pred HHCCCC
Confidence 776644
No 123
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.51 E-value=1.7 Score=35.93 Aligned_cols=143 Identities=11% Similarity=0.142 Sum_probs=88.4
Q ss_pred CcchHHHhhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017638 150 SENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS 218 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~ 218 (368)
..+.+.+ ..+++..|+.+|.. .+......++.||..+..........+...+.+..+...| .+++..
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 3445555 34667667766642 1356677899999998876655544444455677777777 777889
Q ss_pred HHHHHHHHHHHhhcCCCCCC-hhhhh------------chHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHH------
Q 017638 219 MLRNATWTLSNFCRGKPQPP-FDQVR------------PALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDK------ 278 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~-~~~~~------------~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~------ 278 (368)
++..++..|..+|....... ...+- .-+..++..+. ..+.+....++..+..+....++.
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 191 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 191 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999999998753222 22211 12334556665 345778888887777777665432
Q ss_pred HHHHHHcCChHHHHHh
Q 017638 279 IQAVIEAGVCPRLVEL 294 (368)
Q Consensus 279 ~~~~~~~~~~~~L~~l 294 (368)
...+...|+.+.+-.+
T Consensus 192 R~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 192 RSELMRLGLHQVLQEL 207 (233)
T ss_dssp HHHHHHTTHHHHHHHH
T ss_pred HHHHHHCChHHHHHHH
Confidence 1233444555544433
No 124
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.29 E-value=0.22 Score=43.33 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=86.9
Q ss_pred HHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHH
Q 017638 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220 (368)
Q Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~ 220 (368)
-|.++.-+.+...+-++..+++..+...++-++.++....+..|...+....-+..-+ ...+|-++..+..+++.++.
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence 4455556678888999999999999999999999999999999988875433221111 12578888888888999999
Q ss_pred HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc
Q 017638 221 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH 254 (368)
Q Consensus 221 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~ 254 (368)
....+.|+|...++ |.+....-.+.++.|...+.
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 99999999999887 55555555788887777663
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.29 E-value=2 Score=38.53 Aligned_cols=143 Identities=12% Similarity=0.138 Sum_probs=92.3
Q ss_pred CcchHHHhhCCChHHHHHhhC-----------CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017638 150 SENTKVVIDHGAVPIFVKLLA-----------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS 218 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~-----------~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~ 218 (368)
......++ .+++..|+.+|. ..+..+...++.||..|..........+.....+..+...+ .+..+.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence 34455555 456777777764 12457788899999999866554444444455677777777 778889
Q ss_pred HHHHHHHHHHHhhcCCCCCC-hhhhh------------chHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChHH------
Q 017638 219 MLRNATWTLSNFCRGKPQPP-FDQVR------------PALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDK------ 278 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~-~~~~~------------~~~~~L~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~------ 278 (368)
++..++..|..+|....... ...+- .-+..++..|.. .+.+....++..|..+....++.
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 257 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 257 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999998753121 22211 124556777765 56788888888888887765422
Q ss_pred HHHHHHcCChHHHHHh
Q 017638 279 IQAVIEAGVCPRLVEL 294 (368)
Q Consensus 279 ~~~~~~~~~~~~L~~l 294 (368)
...+...|+.+.+-.+
T Consensus 258 R~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 258 RSELMRLGLHQVLQEL 273 (383)
T ss_dssp HHHHHHTTHHHHHHHH
T ss_pred HHHHHHCChHHHHHHH
Confidence 2234455666655553
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.75 E-value=3.8 Score=42.72 Aligned_cols=261 Identities=12% Similarity=0.070 Sum_probs=145.1
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 017638 75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASG--- 148 (368)
Q Consensus 75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~--- 148 (368)
.+..++....++ +.+.+..|-..|..+-.. + .....+...|. .+.++.+|.-|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 355555555554 667788888888776321 1 12333333332 333389999999999987642
Q ss_pred -CCcchHHHhhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHH
Q 017638 149 -TSENTKVVIDHGAVPIFVKLLA---SPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNA 223 (368)
Q Consensus 149 -~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a 223 (368)
-+......+...++..+...-. +....++...+.++..|+... |. ...++++.++.++.. +......+
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~--~~~~~e~~ 153 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ--GETQTELV 153 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT--CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC--CHHHHHHH
Confidence 1222233333344555444321 145889999999999998542 21 123467777777733 44556677
Q ss_pred HHHHHHhhcCC---CCCChhh-------h----hchHHHHHHhhcC-------------------CCHHHHHHHHHHHHH
Q 017638 224 TWTLSNFCRGK---PQPPFDQ-------V----RPALPALAQLVHS-------------------NDEEVLTDACWALSY 270 (368)
Q Consensus 224 ~~~L~~l~~~~---~~~~~~~-------~----~~~~~~L~~lL~~-------------------~d~~v~~~a~~~l~~ 270 (368)
+.+|..|+... ....... + ..+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 78888877531 1111100 1 1333444444432 124566777778776
Q ss_pred hhcCChHHHHHHHHcC--ChHHHHHhcCCCCcchHHHHHHHHHHhhcCC--hHHHHHHHHc---CChHHHHHhhC-----
Q 017638 271 LSDGTNDKIQAVIEAG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGD--DFQTQCIITY---GALPYLLGLLT----- 338 (368)
Q Consensus 271 l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~---g~l~~l~~ll~----- 338 (368)
....-+- ..+.+.. +++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++..+.
T Consensus 234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 6654322 2333332 6777776665 4789999999999999754 2222222221 11234444432
Q ss_pred --CCCCccHHHHHHHHHHHHh
Q 017638 339 --HSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 339 --~~~~~~v~~~a~~~l~nl~ 357 (368)
+.++.++.+..|..+..++
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHH
Confidence 1114567777777777766
No 127
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.07 E-value=5.2 Score=36.58 Aligned_cols=255 Identities=16% Similarity=0.095 Sum_probs=153.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.+..++...+. ++.....|+..+.++...- +...+. .+..++.|..+.+ ..||..|++.|..+|.+ +..
T Consensus 29 ~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~F-P~l~~~-----Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~--~~i 98 (507)
T 3u0r_A 29 DAYQVILDGVKG-GTKEKRLAAQFIPKFFKHF-PELADS-----AINAQLDLCEDED-VSIRRQAIKELPQFATG--ENL 98 (507)
T ss_dssp HHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGC-GGGHHH-----HHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT--TCH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhhHHHhhh--hhh
Confidence 456667766655 5888889999999998754 333332 4788999999998 89999999999999986 443
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
. .+.+.|+++|..+++.-....-++|..+...++.. .+..+...+ ...++.++..++..|..=...
T Consensus 99 ~-----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i-~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 99 P-----RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQI-LQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp H-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHH-HHSCHHHHHHHHHHHHHHGGG
T ss_pred h-----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHH-cccchHHHHHHHHHHHHHHhh
Confidence 3 35688999999988877777888888877655532 456666666 335678888888777653332
Q ss_pred C-CC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHh------cCCCCcchHH
Q 017638 234 K-PQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVEL------LGHPSPSVLI 304 (368)
Q Consensus 234 ~-~~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~l------L~~~~~~v~~ 304 (368)
- +. .......-++..+.+.|++-..+=..-.+.+|..+-.... ...+.+ ++.+... +...+++...
T Consensus 165 l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vd 239 (507)
T 3u0r_A 165 LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVD 239 (507)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHH
Confidence 2 21 2222223455566677755444333444455555543322 211222 3333332 1223444444
Q ss_pred HHHHHHHHhh----c--CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 305 PALRTVGNIV----T--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 305 ~a~~~l~nl~----~--~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
..+.|+..-. . .+.....++.+ +++|.+-.+-.....+..|-....+++-++.
T Consensus 240 RlI~C~~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~ 298 (507)
T 3u0r_A 240 RLLQCTRQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSS 298 (507)
T ss_dssp HHHHHHHHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHcc
Confidence 4444444322 1 22234444444 5777555444433234478888888888886
No 128
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.64 E-value=2.5 Score=44.07 Aligned_cols=202 Identities=14% Similarity=0.080 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHhcCCh
Q 017638 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGD-----SPRCRDLVLSQGAL 204 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nla~~-----~~~~~~~i~~~~~i 204 (368)
+..|.+|-..|..+-.. + .+...+...| .+.+..++..|+.+|-|.... +++.+..+.+
T Consensus 27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~---- 92 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN---- 92 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH----
Confidence 67888888888776552 2 1333344433 356789999999999988632 2333333322
Q ss_pred HHHHHHhccc------cchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---
Q 017638 205 IPLLAQLNER------AKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--- 274 (368)
Q Consensus 205 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~--- 274 (368)
.++..+... .+..++..++.++..++... |.. -..+++.|+.++.+ ++.....++.+|..++..
T Consensus 93 -~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 93 -SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp -HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 334443222 45778888899999888764 322 24678888888866 455567788888887642
Q ss_pred ----ChHHHH----HHHHc--CChHHHHHhcCC-------------------CCcchHHHHHHHHHHhhcCChHHHHHHH
Q 017638 275 ----TNDKIQ----AVIEA--GVCPRLVELLGH-------------------PSPSVLIPALRTVGNIVTGDDFQTQCII 325 (368)
Q Consensus 275 ----~~~~~~----~~~~~--~~~~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 325 (368)
...... .+.+. .++..+..+|.. .+..++..++.++.+...--+ ...++
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence 111111 11111 223333333321 123466778888877765443 22344
Q ss_pred HcC--ChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017638 326 TYG--ALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 326 ~~g--~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+.. +++.+..++. ++.++..|+-+|..++.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHT
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHh
Confidence 433 6777777665 45789999999999997
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.56 E-value=2.1 Score=43.95 Aligned_cols=129 Identities=18% Similarity=0.109 Sum_probs=88.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 017638 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDS 191 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nla~~~ 191 (368)
...|.+.+...+ .+-+..++.+|+|+... ..++.|..++.. ....++..|+|+|.+++...
T Consensus 442 ~~~l~~~~~~~~-~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 442 HDLLSQSSDRAK-EEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHhcCC-hHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 444555666666 78889999999998872 356777777642 24578889999999999765
Q ss_pred hhhHHHHHhcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHH
Q 017638 192 PRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALS 269 (368)
Q Consensus 192 ~~~~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~ 269 (368)
|.. +-+.+++++. ...+.+++..|+..|..-. | . ...+..+...+.. .+.+|.......|.
T Consensus 510 p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P--~----~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 510 PRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK---P--S----VALVSMVAVRLRREPNLQVASFVYSQMR 572 (1056)
T ss_dssp HHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---C--C----HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---c--C----HHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 532 2345666663 3457888888888775422 1 1 1355566666655 57889999999999
Q ss_pred HhhcCCh
Q 017638 270 YLSDGTN 276 (368)
Q Consensus 270 ~l~~~~~ 276 (368)
+++....
T Consensus 573 sla~s~~ 579 (1056)
T 1lsh_A 573 SLSRSSN 579 (1056)
T ss_dssp HHTTCCS
T ss_pred HHHhcCC
Confidence 9987654
No 130
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=91.27 E-value=0.14 Score=28.83 Aligned_cols=38 Identities=32% Similarity=0.519 Sum_probs=26.7
Q ss_pred HHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhh
Q 017638 11 VRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRR 50 (368)
Q Consensus 11 ~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~ 50 (368)
+|...||+ +...++..++| + ..+..|++|-+.++.-|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence 47889999 45544444444 4 578889999888877663
No 131
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.06 E-value=8.2 Score=34.49 Aligned_cols=149 Identities=11% Similarity=0.118 Sum_probs=92.2
Q ss_pred cchHHHhhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhH
Q 017638 151 ENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 219 (368)
Q Consensus 151 ~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~ 219 (368)
.+...+. .+|+..|+.+|.. .+......++.||..|..........+...+++..+...| .+.++.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCchH
Confidence 4444554 4566666666531 1356778899999999877655544455556677777777 7778889
Q ss_pred HHHHHHHHHHhhcCCCCCC-hhhhh------------chHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHH------H
Q 017638 220 LRNATWTLSNFCRGKPQPP-FDQVR------------PALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDK------I 279 (368)
Q Consensus 220 ~~~a~~~L~~l~~~~~~~~-~~~~~------------~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~------~ 279 (368)
+..++..|..+|....... ...+- .-+..++..+. +.+.+....++..|..+....++. .
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR 196 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 196 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999998753222 22111 12334555665 456788888888888888765532 2
Q ss_pred HHHHHcCChHHHHHhcCCCCcc
Q 017638 280 QAVIEAGVCPRLVELLGHPSPS 301 (368)
Q Consensus 280 ~~~~~~~~~~~L~~lL~~~~~~ 301 (368)
..+...|+.+.+-.+-...++.
T Consensus 197 ~Ef~~~GL~~il~~Lr~~~~~~ 218 (386)
T 2bnx_A 197 SELMRLGLHQVLQELREIENED 218 (386)
T ss_dssp HHHHHTTHHHHHHHHTTCCCHH
T ss_pred HHHHHCChHHHHHHHhccCChh
Confidence 2345556665554443334443
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.04 E-value=7.1 Score=35.50 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=121.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
+..|+.++.|.|+..+...-..|+.+...- .....++...+-..+.+++.......-..+.+.+++.|..|..---+.
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 667888888888888777777777775432 223333333344556666644332334567788888887764311111
Q ss_pred HhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 156 VIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
-...-....|+-|.+.... .--.+-.+++..+...+|..... ++..|++.= ...+..=....+.-+..+....
T Consensus 242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~eleeile~~ 315 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEEILDVI 315 (449)
T ss_dssp HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHHHHHhC
Confidence 1110112333344443322 22334556666655555544222 122222221 2223332233445555666543
Q ss_pred CCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCC-----CCcchHHH
Q 017638 235 PQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-----PSPSVLIP 305 (368)
Q Consensus 235 ~~~~~~-~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~~ 305 (368)
+...+. ....++..+...+.+++-.|.+.|+....| + .+-.++.. .+++.+...|.. =+..++..
T Consensus 316 ~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~-~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~l 389 (449)
T 2npp_B 316 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 389 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----H-HHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHH
Confidence 333332 224566777788888888888887654321 2 11222221 245666665522 25678999
Q ss_pred HHHHHHHhhcCChHHH
Q 017638 306 ALRTVGNIVTGDDFQT 321 (368)
Q Consensus 306 a~~~l~nl~~~~~~~~ 321 (368)
|..++.-+..-++...
T Consensus 390 a~~vlk~l~e~d~~lf 405 (449)
T 2npp_B 390 IYNALKLFMEMNQKLF 405 (449)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCHHHH
Confidence 9999988877666443
No 133
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.87 E-value=8.4 Score=34.30 Aligned_cols=89 Identities=10% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017638 89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (368)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (368)
..+...+..++.++-.. ++. .-.++++.++.+-..++ .++|...+..|...+....+. +. .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el---~~--~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIEL---LL--KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGG---HH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHH
Confidence 46888888888875532 232 23567999999988887 899999999999888743333 22 357888889
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 017638 169 LASPSDDVREQAVWALGNVA 188 (368)
Q Consensus 169 L~~~~~~v~~~a~~~L~nla 188 (368)
|.++++.+...++.+.+++-
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888874
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.53 E-value=6.9 Score=32.73 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
+-.+++.-+....+.+...+...+.++-.. ++. .-..+++.++.+-.+++ .++|...+..+...+...++..
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~----ll~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~-- 88 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE----LAEEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELL-- 88 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG----GHHHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH--
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh----HHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHH--
Confidence 445555444433368889999999976653 222 12345788888776666 8999999999999886433322
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC---------------ChHHHHHHhccccchhHH
Q 017638 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG---------------ALIPLLAQLNERAKLSML 220 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~---------------~i~~l~~~l~~~~~~~~~ 220 (368)
...++.|..++.++++.+...++.+.+++-.- .-+.+...+ .=..++.++ .+.+..++
T Consensus 89 ---~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~---~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~-~s~n~gvk 161 (257)
T 3gs3_A 89 ---PHVINVVSMLLRDNSAQVIKRVIQACGSIYKN---GLQYLCSLMEPGDSAEQAWNILSLIKAQILDMI-DNENDGIR 161 (257)
T ss_dssp ---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGG-GSSCHHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH-ccCCcchH
Confidence 23578888999999999999999888877311 111111111 112333443 55677777
Q ss_pred HHHHHHHHHhh
Q 017638 221 RNATWTLSNFC 231 (368)
Q Consensus 221 ~~a~~~L~~l~ 231 (368)
..+...+..+.
T Consensus 162 l~~iKF~e~vI 172 (257)
T 3gs3_A 162 TNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777644
No 135
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.23 E-value=5.3 Score=35.72 Aligned_cols=228 Identities=14% Similarity=0.070 Sum_probs=111.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
+..|+.++.|.|+..|...-..|..+... -.....++...+-..|.+++-......-..+.+.+++.|..|-.---+.
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 56677777888887777766667666543 1222333433344555665543321233446677777776653211110
Q ss_pred HhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 156 VIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
-...-....|+-+-+.... .--.+-..++......+|.....+ +..+++.= ...+..=....+.-+..+...-
T Consensus 209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~Ele~iLe~~ 282 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEEILDVI 282 (403)
T ss_dssp HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCcHHHHHHHHHHHHHHHhC
Confidence 0000012233333333322 223455666666665555442221 22222221 2223332333445555566543
Q ss_pred CCCChhh-hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhc----CC-CCcchHHH
Q 017638 235 PQPPFDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----GH-PSPSVLIP 305 (368)
Q Consensus 235 ~~~~~~~-~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL----~~-~~~~v~~~ 305 (368)
+...+.. ...++..+...+.+++-.|.+.|+.... .+.+-.++.. .+++.+...| .. =+..++..
T Consensus 283 ~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn------Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l 356 (403)
T 3fga_B 283 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 356 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc------cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 3223222 2456667777788888888887765431 1222222221 2445544444 22 25778888
Q ss_pred HHHHHHHhhcCC
Q 017638 306 ALRTVGNIVTGD 317 (368)
Q Consensus 306 a~~~l~nl~~~~ 317 (368)
+..++.-+..-+
T Consensus 357 ~~~vlk~l~e~d 368 (403)
T 3fga_B 357 IYNALKLFMEMN 368 (403)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhC
Confidence 888777775543
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.18 E-value=1.3 Score=34.36 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=56.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+++..+.+.|++.++.+++.|+..|..++..........+....++..|+.++....++.|+..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999888887654233334555677888888888764448999999888877765
No 137
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=86.89 E-value=2.9 Score=34.16 Aligned_cols=132 Identities=8% Similarity=-0.048 Sum_probs=78.2
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 017638 213 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (368)
Q Consensus 213 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 291 (368)
.++.-+.+..++..+........ ...++.+-.++. .++..+....|.+++.++...++. +.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 44555666666666665432111 123333444443 345666666666676665433332 24567
Q ss_pred HHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017638 292 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
.....+++.-++..|+... +..........+ ++.+-.++.++ +..|++..+|+|..++..+++.+...
T Consensus 130 ~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~~-----~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~f 197 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQ--LMLKEKTNQDLL-----KKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEEL 197 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTT--TTCGGGCCHHHH-----HHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH--HHHHHCCCHHHH-----HHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 7888888887777776544 222111122222 44444567777 89999999999999999998876543
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.10 E-value=1.1 Score=33.64 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=53.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+++..+.+.|++.++..++.|+..+..++... .... ..+....++..|+.+++..+ +.|+..++..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc-G~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNC-GKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 45777788888888888888888887776544 3333 34546667788888887666 8999988888877664
No 139
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=85.95 E-value=8.7 Score=32.81 Aligned_cols=131 Identities=10% Similarity=0.077 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCCcchHHHhh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHh
Q 017638 136 FEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQL 211 (368)
Q Consensus 136 ~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~--~~i~~l~~~l 211 (368)
..|+--|..++.+ -+..-.++. ...+..|+ +.....+.+++.|..+|+.-.+++|...+.+.+. .++..+..-|
T Consensus 46 e~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L 123 (315)
T 3qml_C 46 EDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAAL 123 (315)
T ss_dssp HHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHH
Confidence 4444455555553 333333332 12223333 2233567899999999999999999887777663 2333443333
Q ss_pred cc---c---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 017638 212 NE---R---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLS 272 (368)
Q Consensus 212 ~~---~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~ 272 (368)
.. . ....++...+++|..|.... ..+ ....+..|.+++... ++.++..++..+..+-
T Consensus 124 ~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~F--~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 124 SNLNDSNHRSSNILIKRYLSILNELPVTS--EDL--PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHCC--CCCHHHHHHHHHHHHHSCCCS--TTC----CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHhcCh--Hhh--hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 11 1 23466777888888888774 112 234556666666656 8889998888887665
No 140
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=85.87 E-value=15 Score=33.50 Aligned_cols=193 Identities=13% Similarity=0.065 Sum_probs=94.0
Q ss_pred chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017638 152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
.....++...+-.|+.++.++|+.=|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++.+++.+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 34555666678889999999999999988888888865544444444332 23344555533333333456677777777
Q ss_pred cCCCCCC-hhhhhchHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017638 232 RGKPQPP-FDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (368)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~L~~lL~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 309 (368)
.+...+- .....-+..+|+.+.....- ..-.....|+..++..++.....+ +..|+++=-..++.-...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence 7753222 12222234455555554432 222333344444444333332221 2222222211222212223333
Q ss_pred HHHhhcC-ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHH
Q 017638 310 VGNIVTG-DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (368)
Q Consensus 310 l~nl~~~-~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~ 352 (368)
|..+... ++...+.+.. .+...+..++.++ +..|.+.|...
T Consensus 308 leeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~ 349 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYY 349 (449)
T ss_dssp HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 3333322 2222222222 3455566666665 55666655543
No 141
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.06 E-value=16 Score=32.60 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=47.5
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
..++...+-.|+.++.++|+.=|+..-.+|..|-+.-...|..+... +-..+.+.+.....-.-....+.+++.+..+.
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 34444567778999999999999999998888876655555444331 22344444422222222335556666666554
No 142
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.56 E-value=8.1 Score=34.39 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=98.1
Q ss_pred CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017638 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 281 (368)
Q Consensus 202 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 281 (368)
.+++.++.+- .+.+.++++.++..|...|.. .......+++.|..+|.+.|+.|...++.+.+++-. ...+.
T Consensus 63 ~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp---l~f~~ 134 (386)
T 3o2t_A 63 NFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYK---VALQW 134 (386)
T ss_dssp GGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 3778888776 677899999999999998864 233446788889999998899888887776665531 11111
Q ss_pred HHHc---------------CChHHHHHhcCCCCcchHHHHHHHHHHhhc--C--C-h-H---------------------
Q 017638 282 VIEA---------------GVCPRLVELLGHPSPSVLIPALRTVGNIVT--G--D-D-F--------------------- 319 (368)
Q Consensus 282 ~~~~---------------~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~--~--~-~-~--------------------- 319 (368)
++.. .+-..++..+.+.+..++..|+..+..++- . . + .
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L 214 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI 214 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence 1111 233456666778889999999998888651 1 0 0 0
Q ss_pred HHHHHHH--cCChHHHHHhhCCCC-CccHHHHHHHHHHHHhcCCHHH
Q 017638 320 QTQCIIT--YGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 320 ~~~~~~~--~g~l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
....+.. .+++..|+.++.++. ++..--.+..+|++|+..-|..
T Consensus 215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~ 261 (386)
T 3o2t_A 215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMF 261 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHH
Confidence 0011111 267888888887642 3334455667777777654443
No 143
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=84.14 E-value=0.67 Score=47.04 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=102.6
Q ss_pred ChHHHHHhhCCCCH-HHHHH-HHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---c-ccchhHHHHHHHHHHHhhcCC
Q 017638 161 AVPIFVKLLASPSD-DVREQ-AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---E-RAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 161 ~i~~L~~lL~~~~~-~v~~~-a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~---~-~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.+|.|+.+.+..+. ++... |..++..++.... ... .++.++..+. . +++- .+..++..+..+....
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~-~~~------~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI-RKN------HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC-CHH------HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC-CHH------HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 67777777776655 67776 5666777764421 111 1333444432 2 3444 5555544443332211
Q ss_pred -CCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCC-h-HHHHHHHH---cCC-----hHHHHHhcCCCCcch
Q 017638 235 -PQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGT-N-DKIQAVIE---AGV-----CPRLVELLGHPSPSV 302 (368)
Q Consensus 235 -~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~-~-~~~~~~~~---~~~-----~~~L~~lL~~~~~~v 302 (368)
..........+...++.+|.++. .+|+..|+.+|+.+.... . .....++. ..+ ...+-+-. +.+...
T Consensus 833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~~ 911 (997)
T 1vsy_5 833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDIK 911 (997)
T ss_dssp TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCHH
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHHH
Confidence 11111222467788899999999 999999999999996554 3 22222222 111 11110000 011245
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC-CC-CCccHHHHHHHHHHHHhcCCHH
Q 017638 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HS-HKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~-~~-~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
+..|+..|+.++...|...- -...+|.++..|. +. +...+++.+--+|+++=...++
T Consensus 912 rH~aVLgL~AlV~a~Py~vP---~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 912 IHGNVLGLGAIISAFPYVFP---LPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HHHHHHHHHHHHTTCSCCSS---CCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHhhCCCCCC---CCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHHhccch
Confidence 67888889998877663320 0123433333332 11 1334999999999998764433
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.82 E-value=2.3 Score=32.28 Aligned_cols=74 Identities=11% Similarity=-0.050 Sum_probs=57.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~ 147 (368)
+++..+.+.|++.++..++.|+..|..++..........+....++..|+.++.. ..++.|+..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999888765433333556677889999999874 1237999999988888775
No 145
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=83.67 E-value=11 Score=32.26 Aligned_cols=148 Identities=9% Similarity=0.031 Sum_probs=95.1
Q ss_pred cHHHHHHhhcCC------CHHHHHHHHHHHHHhhcCCCCCchHHHHhc--CcHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 017638 75 SLPAMVAGVWSD------DSSLQLEATTQFRKLLSIERSPPIEEVIQS--GVVPRFVEFLMREDYPQLQFEAAWALTNIA 146 (368)
Q Consensus 75 ~i~~l~~~l~~~------~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~--g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~ 146 (368)
.+..+..+++++ +.+....|+..|..+.. + -..-..++.. .++..|+ +..... +.++..|+++++...
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-D-i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssL 98 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-D-YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCL 98 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-S-HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-h-HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHH
Confidence 456666677766 44456667777776632 1 2333345542 2333333 223333 789999999999999
Q ss_pred cCCCcchHHHhhC--CChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc--
Q 017638 147 SGTSENTKVVIDH--GAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-- 215 (368)
Q Consensus 147 ~~~~~~~~~~~~~--g~i~~L~~lL~~-------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-- 215 (368)
..||.....+.+. ..+..++.-|.. ....++..-+.+|..|..++..+. ..++..|.+++ ...
T Consensus 99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly-~~~~~ 172 (315)
T 3qml_C 99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVY-ERNNK 172 (315)
T ss_dssp TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHH-HHTTT
T ss_pred ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHH-ccCCC
Confidence 9899888877763 344444433322 345677788888888888764331 34678888888 345
Q ss_pred chhHHHHHHHHHHHhhc
Q 017638 216 KLSMLRNATWTLSNFCR 232 (368)
Q Consensus 216 ~~~~~~~a~~~L~~l~~ 232 (368)
+..++..++..+..+..
T Consensus 173 d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 173 DKQLQIKVLELISKILK 189 (315)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcc
Confidence 88889988888887764
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=83.29 E-value=2.6 Score=32.05 Aligned_cols=73 Identities=8% Similarity=-0.012 Sum_probs=56.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------EDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~------~~~~~v~~~a~~~L~~l~~ 147 (368)
+++..+.+.+++.++..++.|+..|..++..........+....++..|+.++.. .+ +.|+..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4677888888999999999999988888765433333556677788999999964 34 7899999988888775
No 147
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=82.83 E-value=15 Score=32.67 Aligned_cols=191 Identities=13% Similarity=0.049 Sum_probs=102.3
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
..++...+..|+.++.++|+.=|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++..++.+..+.
T Consensus 169 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 169 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 34445567889999999999999998888888866544455444332 33455666633333344456777777777776
Q ss_pred CCCC-hhhhhchHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017638 235 PQPP-FDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 235 ~~~~-~~~~~~~~~~L~~lL~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
..+- .....-+...|+.+.....- ..-.....|+...+..++.....+ +..++++=-..+..-...-+.-|..
T Consensus 248 a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~elee 322 (392)
T 2jak_A 248 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE 322 (392)
T ss_dssp CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHH
Confidence 3222 22222234556666554432 223334455554454444333222 2333333211222222333444444
Q ss_pred hhcCC-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017638 313 IVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 313 l~~~~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
+.... +...+.+.. .+...+..++.++ +..|.+.|....
T Consensus 323 iLe~~~~~~f~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w 362 (392)
T 2jak_A 323 ILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW 362 (392)
T ss_dssp HHHTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 44332 333333332 5677777888887 777777776543
No 148
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=80.25 E-value=6.5 Score=32.29 Aligned_cols=138 Identities=9% Similarity=0.055 Sum_probs=76.7
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHH-HHHHHhhcCChHHHHHHHH
Q 017638 207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDAC-WALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 207 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~-~~l~~l~~~~~~~~~~~~~ 284 (368)
++..|-.++..+.+..++..+........ ...++.+-.++. .++..+....| .+++.+....++
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHIN-------ETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCC-------GGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------
Confidence 44444355555666666666653321111 123334444443 34555544432 344444433222
Q ss_pred cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017638 285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 285 ~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
...+.+...+.+++.-++..|+..+ +......... ..++.+..++.++ +..|++...|+|..+...+++.+
T Consensus 131 -~~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 131 -LISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp -GGGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHH
Confidence 1456677888888877777776543 2221111111 1234455666777 89999999999999999888877
Q ss_pred hhc
Q 017638 365 QVM 367 (368)
Q Consensus 365 ~~v 367 (368)
...
T Consensus 202 ~~f 204 (232)
T 3jxy_A 202 WEY 204 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.18 E-value=1.9 Score=35.37 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=55.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+++..|.+.|++.++.+++.|+..|..++.........++....++..|+.++....++.|+..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46788888899999999999998888776644223334455667777888888664448899999888887765
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=78.91 E-value=3.3 Score=32.27 Aligned_cols=75 Identities=9% Similarity=-0.019 Sum_probs=56.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhcC
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~~ 148 (368)
+++..|.+.|++.++.+++.|+..|..++..........+....++..|+.++.. ..++.|+..++..+...+..
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4577788888899999999999988888765422333456677788899999863 12378999999888887763
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=77.86 E-value=5.9 Score=40.25 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=109.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc---ccchhHHHHHHHHHH--HhhcCCC
Q 017638 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLS--NFCRGKP 235 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~--~l~~~~~ 235 (368)
.+.-|+.+--+...+|+..|-.+|......-+..+.. +++.+++.|.. +.+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 4566777777889999999999999998766555544 46777777754 445555566666554 11111 1
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC------------------------hHHHHH----------
Q 017638 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT------------------------NDKIQA---------- 281 (368)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~------------------------~~~~~~---------- 281 (368)
.........+++.|++..+.+.+.|+..+-.+...+.... ...++.
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1234445667777777776666666555444433332210 000010
Q ss_pred -HHH--cCChHHHHHhc-CCCC--cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017638 282 -VIE--AGVCPRLVELL-GHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 282 -~~~--~~~~~~L~~lL-~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
..+ .++...++... .... +.....+++.+.++....+. .....++..+.+.+.++ .+.+|+.|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 111 13344444554 3344 77777777886666643321 11123456677778888 89999999988866
Q ss_pred Hh
Q 017638 356 IT 357 (368)
Q Consensus 356 l~ 357 (368)
+.
T Consensus 363 il 364 (997)
T 1vsy_5 363 TC 364 (997)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 152
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=77.81 E-value=8.7 Score=32.02 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc-------ccchhHHHHHHHHHHHhhcCCC--CCChhh
Q 017638 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-------RAKLSMLRNATWTLSNFCRGKP--QPPFDQ 241 (368)
Q Consensus 171 ~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~~--~~~~~~ 241 (368)
+.++..+-.++++++|+..+....+..+........++..+.. ..+..++..++..+.|++-... ......
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 4567888999999999998875345555443334445554421 2366788888999999886431 111222
Q ss_pred hhchHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcCC
Q 017638 242 VRPALPALAQLVH-----SNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 242 ~~~~~~~L~~lL~-----~~d~~v~~~a~~~l~~l~~~~ 275 (368)
...++..+...+. ..|++....++-+++++...+
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 2223333333211 237889999999999998543
No 153
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.79 E-value=6 Score=30.49 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=55.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
++..|.+-|.+.++.++-.|+.+|-.+..+. +.++..+....++..++.++....++.++..++..+..-....
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666677778888888888888888763 5577778777888899998854467888888888777666543
No 154
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=75.97 E-value=7.1 Score=35.15 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-
Q 017638 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN- 212 (368)
Q Consensus 135 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~- 212 (368)
+..++-+|.-++.+.+.. +.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555666776666543321 22333332 333556788899999999999876533444433223456666552
Q ss_pred ------cccchhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcCC
Q 017638 213 ------ERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH---------SNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 213 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~---------~~d~~v~~~a~~~l~~l~~~~ 275 (368)
...+..++..++..+.|++-.. .... ..+++.+..++. ..|++....++-+|++|+...
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235678888889999988643 1111 123444555554 358899999999999999644
Q ss_pred h
Q 017638 276 N 276 (368)
Q Consensus 276 ~ 276 (368)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.83 E-value=3 Score=34.07 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=54.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+++..|.+.|++.++..++.|+..|..++.........++....++..|+.++.+..++.|+..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 46778888889999999999998888887643222234455666788888888754447888888877777664
No 156
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=71.67 E-value=7.8 Score=34.16 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-
Q 017638 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN- 212 (368)
Q Consensus 135 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~- 212 (368)
+.-++-+|.-++.+.+. . +.+..++. .+.+..+..+-.++++++|+.......+..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~-~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-H------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 55577777766664321 1 22333332 333556788899999999999876533333322212334454441
Q ss_pred ------cccchhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcCC
Q 017638 213 ------ERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH---------SNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 213 ------~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~---------~~d~~v~~~a~~~l~~l~~~~ 275 (368)
...+..++..++..+.|++-.. .... ....+.+.+++. ..|++....++-++++|+...
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235678888889999988643 1111 133445555554 358899999999999999643
Q ss_pred h
Q 017638 276 N 276 (368)
Q Consensus 276 ~ 276 (368)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 157
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.92 E-value=5.8 Score=29.71 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=63.2
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH-HHHHcCChHH
Q 017638 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CIITYGALPY 332 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~ 332 (368)
..+|.......|..+.. .+... ..++..+.+-|.+.++.++..|+..+-.++..+..... .+.+..++..
T Consensus 19 ~~~dw~~ileicD~I~~----~~~~~-----k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e 89 (140)
T 3ldz_A 19 TAEDWGLILDICDKVGQ----SRTGP-----KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE 89 (140)
T ss_dssp SSCCHHHHHHHHHHHTT----STTHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHC----CCcCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 44566666666655532 11111 12366777888889999999999999888877654443 3444467777
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHh
Q 017638 333 LLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 333 l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
+..++... ++.|+..+.-.+..-+
T Consensus 90 l~~l~~~~-~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 90 VSNVLNKG-HPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHhccC-CHHHHHHHHHHHHHHH
Confidence 88888666 7889988877776655
No 158
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=70.44 E-value=10 Score=33.80 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 017638 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT 149 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~ 149 (368)
+..|+.++.+.|+..|..--..++.+... -.....++...+-..|.+++.......-..+.+.+++.|..+.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 45566666677766666665666555432 1223333333344455555544332233445666666666543
No 159
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.27 E-value=14 Score=28.71 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=66.0
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH-HHHHcCChHH
Q 017638 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CIITYGALPY 332 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~ 332 (368)
..+|+......|..+..=..+ . ..++..|.+-|.+.++.++..|+..|-.++..+..... .+.+..++..
T Consensus 27 ~~~Dw~~ileicD~I~~~~~~---~------k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e 97 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKELEG---P------QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE 97 (171)
T ss_dssp SSCCHHHHHHHHHHHHHSTTH---H------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCcc---H------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 345666666666666543211 1 12366788888999999999999999999988765444 4555678888
Q ss_pred HHHhhCCC-----CCccHHHHHHHHHHHHh
Q 017638 333 LLGLLTHS-----HKKSIKKEACWTISNIT 357 (368)
Q Consensus 333 l~~ll~~~-----~~~~v~~~a~~~l~nl~ 357 (368)
|..++... .+..|++.+...|..-+
T Consensus 98 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 98 LIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 99988631 25688888877776655
No 160
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.25 E-value=12 Score=28.20 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=64.6
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH-HHHHHcCChHH
Q 017638 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALPY 332 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~~ 332 (368)
..+|.......|..+..=.. .. ..++..|.+-|.+.++.++..|+..+-.++.++.... ..+-+..++..
T Consensus 15 ~~~dw~~~leicD~I~~~~~---~~------k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTDPN---GP------THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNE 85 (148)
T ss_dssp SSCCHHHHHHHHHHHHHSSH---HH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCc---cH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence 34566666666655543211 11 1236677788889999999999999999998766444 44556688888
Q ss_pred HHHhhCCC-----CCccHHHHHHHHHHHHh
Q 017638 333 LLGLLTHS-----HKKSIKKEACWTISNIT 357 (368)
Q Consensus 333 l~~ll~~~-----~~~~v~~~a~~~l~nl~ 357 (368)
|..++... .+..|+..+...+..-+
T Consensus 86 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 86 LIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 99988742 25688888777666654
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.81 E-value=8.8 Score=31.22 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=55.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017638 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
++..|..-|.+.++.++..|+.+|-.+..+. +.++..+....++..|..++....+..++..++..+..-...
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4556667777888999999999999988775 447777777778888888886556788888887777665544
No 162
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=67.30 E-value=76 Score=29.06 Aligned_cols=143 Identities=16% Similarity=0.158 Sum_probs=92.2
Q ss_pred HHHHHHhhcCC------CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 017638 76 LPAMVAGVWSD------DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT 149 (368)
Q Consensus 76 i~~l~~~l~~~------~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~ 149 (368)
++.+.+.+.++ |++. .+..+.++++. -+.+.+.+.=-+..++..|.++. +.+...|+.++. .
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~---~~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~ 142 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPM---ADFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----N 142 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHH---SCHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----T
T ss_pred HHHHHHHHcCCccccccCHHH---HHHHHHHHHhc---CCHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----c
Confidence 55555555322 4554 33344444442 23455666556888999999987 899999999998 2
Q ss_pred CcchHHHhhCCChHHHHHhhCCCCH--H-HHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHH
Q 017638 150 SENTKVVIDHGAVPIFVKLLASPSD--D-VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT 226 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~--~-v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 226 (368)
++-+..+...+++..++.++.+++. . +...+=.++..++.+. -+|..+.+. .+ +++..++...+..+.....-.
T Consensus 143 s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssde-Lirrril~n-nl-~lL~~vK~~~~~i~~sRLLdl 219 (500)
T 3vld_A 143 SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDE-LIRRRLFDN-NL-PYLVSVKGRMETVSFVRLIDF 219 (500)
T ss_dssp CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHHHH
T ss_pred cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchH-HHHHHHHHH-hH-HHHHHHhcCCCceeHHHHHHH
Confidence 4556777888999999999887553 3 7777777888887553 356666654 34 455555455566555555655
Q ss_pred HHHhhcC
Q 017638 227 LSNFCRG 233 (368)
Q Consensus 227 L~~l~~~ 233 (368)
+.-+...
T Consensus 220 l~il~~~ 226 (500)
T 3vld_A 220 LTIEFQF 226 (500)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 5555544
No 163
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=64.09 E-value=62 Score=26.88 Aligned_cols=180 Identities=9% Similarity=0.124 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh
Q 017638 175 DVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 253 (368)
Q Consensus 175 ~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL 253 (368)
+.+-..+.-...++-+ +|.+-.. +++.++.+. .+.+.++++.++..+...|..+ ......+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEE-----FLESVLSLA-HDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhc-cCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444445545554433 3333222 466666654 5678889999999998888543 234457888888889
Q ss_pred cCCCHHHHHHHHHHHHHh--------hcCCh--HHHHHHHH--cCChHHHHHhcCCCCcchHHHHHHHHHHhhc--CC--
Q 017638 254 HSNDEEVLTDACWALSYL--------SDGTN--DKIQAVIE--AGVCPRLVELLGHPSPSVLIPALRTVGNIVT--GD-- 317 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l--------~~~~~--~~~~~~~~--~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~-- 317 (368)
.++|+.|...++.+..++ +..+. +..+..=+ ..+-..++..+.+.+..++..|+..+..++- ..
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~ 179 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFAD 179 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCC
Confidence 888888887777766654 32221 11111110 1234456677788889999999998888651 10
Q ss_pred hH--------------------HHHHHHH--cCChHHHHHhhCCCC-CccHHHHHHHHHHHHhcCCHHHh
Q 017638 318 DF--------------------QTQCIIT--YGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 318 ~~--------------------~~~~~~~--~g~l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
.. ....+.. .+.+..|+..+.++. +...--.+..+|+.++..-|...
T Consensus 180 ~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 180 EDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp TTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 00 0011211 266777777766542 22244566677777776555443
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.81 E-value=9.9 Score=31.06 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=57.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017638 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
++..|..-|.+.++.++-.|+.+|-.+..+. +.+...+....++..|..++....+..++..++..+...+...
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4566777777889999999998888887653 3466777777788888888866668889999888888777543
No 165
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.70 E-value=26 Score=26.38 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=64.6
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH-HHHHHcCChHH
Q 017638 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALPY 332 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~~ 332 (368)
..+|.......|..+..= +..- . .++..|.+-+.+.++.++..|+..+-.++..+.... ..+-...++..
T Consensus 25 ~~~dw~~ileicD~I~~~---~~~p-k-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~e 95 (149)
T 3g2s_A 25 KELDWASINGFCEQLNED---FEGP-P-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE 95 (149)
T ss_dssp SSCCHHHHHHHHHHGGGS---SSHH-H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHCC---CCcH-H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 345666666665554321 1111 1 236677788889999999999999999988776554 33555578888
Q ss_pred HHHhhCCC-----CCccHHHHHHHHHHHHh
Q 017638 333 LLGLLTHS-----HKKSIKKEACWTISNIT 357 (368)
Q Consensus 333 l~~ll~~~-----~~~~v~~~a~~~l~nl~ 357 (368)
|..++... .++.|+..+.-.+..-+
T Consensus 96 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 96 LIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 99998742 26788888887777655
No 166
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=60.90 E-value=17 Score=27.67 Aligned_cols=74 Identities=11% Similarity=-0.000 Sum_probs=50.2
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHH-HHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 017638 74 ESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR-FVEFLMRE--DYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~-Lv~lL~~~--~~~~v~~~a~~~L~~l~~ 147 (368)
+++..+.+.|+ +.++..++.|+..|..++..........+....++.. |+.++... ....|+..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 45677777887 4788888888888887776542333334556677887 78887431 125788888877777664
No 167
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=60.43 E-value=1.6 Score=37.88 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=28.0
Q ss_pred chHHHHhhcccCCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhc
Q 017638 8 RAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREG 52 (368)
Q Consensus 8 ~~~~r~~~~k~~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~ 52 (368)
....|...||+...+.+..+|| +...+..|++|.+.++..|++.
T Consensus 28 a~HPR~sqyK~k~~~~~Q~~RR-~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQSERR-RRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCCHHH-HHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHHHHH-HHHHHHHHHHHHHHHHHhcccc
Confidence 4568999999843333333333 4455788889999999999874
No 168
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.42 E-value=35 Score=28.29 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC
Q 017638 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170 (368)
Q Consensus 91 ~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 170 (368)
++-++..+|-++... +. .+.+..++.-...+..+..+.-+++++.|+..+....+..+........++..+.
T Consensus 71 ~fP~lDllRl~~~~~--~~------~~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~ 142 (253)
T 3gae_A 71 KTPAYDIVRLIVKKL--PY------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 142 (253)
T ss_dssp CHHHHHHHHHHGGGC--SC------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHHcCC--ch------HHHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHH
Confidence 555666666555432 11 1233333332222334889999999999999853323444443322344444332
Q ss_pred ----C----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc--------ccchhHHHHHHHHHHHhhcCC
Q 017638 171 ----S----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------RAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 171 ----~----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~--------~~~~~~~~~a~~~L~~l~~~~ 234 (368)
+ ++..++-.++..+.|++......+. +......++..+.. ..+.+....++-++++|...+
T Consensus 143 ~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 143 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 1 3567888889999999842110000 11234455555532 247788999999999998643
No 169
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=51.37 E-value=52 Score=26.07 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=64.0
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc--chhHHHHHHHHHHHhhc
Q 017638 161 AVPIFVKLLAS------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCR 232 (368)
Q Consensus 161 ~i~~L~~lL~~------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~ 232 (368)
.+|.++.++.+ .+.......+.....|..+..-.-+.- -+-.+|+++..+-... ...++..|+..+..+|+
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepY-lH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPY-LHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGG-HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHH-HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 56777766643 355666666666666665532111111 1115777777763221 22799999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHhh
Q 017638 233 GKPQPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLS 272 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d--~~v~~~a~~~l~~l~ 272 (368)
............+...+.+.+.+++ .....-|+..|..+-
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 7543333334556777777665543 445555555555554
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=51.13 E-value=26 Score=31.55 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhc-CcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017638 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMRE-------DYPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~-g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
+..+..++.+++.+.++++. ......++.. .....+++.+... .+..++..++..+.|++......+.
T Consensus 273 ~~~~an~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~-- 348 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 348 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS--
T ss_pred CCChhHHHHHHHHHHHhcCC--cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 45688999999999999864 2323444432 3355666655321 1257899999999998873211110
Q ss_pred hhCCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChhhHH
Q 017638 157 IDHGAVPIFVKLLA---------SPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 157 ~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
+...+..+..++. ..+.+...-++-+||+|....+..+.
T Consensus 349 -~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 349 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1123345555554 24788889999999999865555443
No 171
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.01 E-value=66 Score=24.35 Aligned_cols=95 Identities=8% Similarity=0.062 Sum_probs=61.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChHHHH-HHHHcCChH
Q 017638 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQ-CIITYGALP 331 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~ 331 (368)
.++|+....+.|..+..=. ... . .++..|.+-|. +.++.++..|+..+-.++..+..... .+.+..++.
T Consensus 30 ~~~Dw~~~leicD~I~~~~---~~~-k-----~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~ 100 (157)
T 1elk_A 30 QSEDWALNMEICDIINETE---EGP-K-----DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVE 100 (157)
T ss_dssp SSCCHHHHHHHHHHHHHSS---SHH-H-----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCC---ccH-H-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHH
Confidence 3456777666666654311 111 1 23567777786 47889999999999999887754444 355557788
Q ss_pred H-HHHhhCCCC--CccHHHHHHHHHHHHh
Q 017638 332 Y-LLGLLTHSH--KKSIKKEACWTISNIT 357 (368)
Q Consensus 332 ~-l~~ll~~~~--~~~v~~~a~~~l~nl~ 357 (368)
. |+.++.... ...|++.+...+..-+
T Consensus 101 e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 101 SVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 7 778775321 3478888776666544
No 172
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=44.97 E-value=1.2e+02 Score=24.47 Aligned_cols=143 Identities=7% Similarity=-0.039 Sum_probs=84.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHH-HHHHHhhcCCCCCChh
Q 017638 163 PIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT-WTLSNFCRGKPQPPFD 240 (368)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~-~~L~~l~~~~~~~~~~ 240 (368)
..+..+..++..+.+-.|+..+...... .+. .++.+-..+...++-.+....+ .++..++...|
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p----- 129 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHP----- 129 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCG-----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCH-----
Confidence 3445566777777777777777643221 111 2333444443444555554443 34445444322
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017638 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
....+.+...+.++++-++..++..+.......+. . ..+..+..++.+++.-++....|+|..+...+++.
T Consensus 130 --~~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~--~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 130 --ELISAYIPKWIASDNIWLQRAAILFQLKYKQKMDE--E-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp --GGGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCH--H-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred --HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCH--H-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 12445677888888888887777654322211111 1 12345556778888999999999999999888877
Q ss_pred HHHHHHcC
Q 017638 321 TQCIITYG 328 (368)
Q Consensus 321 ~~~~~~~g 328 (368)
+..+++.+
T Consensus 201 v~~fl~~~ 208 (232)
T 3jxy_A 201 VWEYVQNN 208 (232)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHC
Confidence 66666543
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.05 E-value=26 Score=30.85 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcC-cHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017638 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG-VVPRFVEFLMRE-------DYPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g-~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
+..+..++-+++.+.++.+.. .....++... ....+++.+... .+..++..++..+.|++......+.
T Consensus 210 ~~~~~n~MltlR~laNlF~~~--~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~-- 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS--
T ss_pred CCChhHHHHHHHHHHHhccCc--chHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 556889999999999998642 3234444322 234445544211 1257889999999998873211110
Q ss_pred hhCCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChhh
Q 017638 157 IDHGAVPIFVKLLA---------SPSDDVREQAVWALGNVAGDSPRC 194 (368)
Q Consensus 157 ~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nla~~~~~~ 194 (368)
+......+..++. ..+.+...-++-+||+|....+..
T Consensus 286 -~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~ 331 (362)
T 3l3f_X 286 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 331 (362)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 1223345555554 257888999999999998655544
No 174
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=44.00 E-value=22 Score=20.69 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=15.2
Q ss_pred HHHhhhHHHHHHHHHHhhh
Q 017638 24 EGRRRREDNMVEIRKNKRE 42 (368)
Q Consensus 24 ~~r~kr~~~~~~lRk~kr~ 42 (368)
+.|++.++....+||.++.
T Consensus 11 ~~Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4588888888899988774
No 175
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=42.22 E-value=1e+02 Score=30.47 Aligned_cols=112 Identities=12% Similarity=0.069 Sum_probs=66.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc--ccchhHHHHHHHHHHHhhcCCC--C
Q 017638 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATWTLSNFCRGKP--Q 236 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~~--~ 236 (368)
..|.+..-+.+.+..+...+..+|.+||.-.|.+++.++. ++++.+..-|.. -..+--...++.+|..+++.-. .
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 4566667778889999999999999999877744444433 134444444422 2333344455666666554321 1
Q ss_pred CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017638 237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~ 273 (368)
.-...+..++..++.-+..+|+.=-..++..+..++.
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 1112234555566666777887766666666666543
No 176
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=41.68 E-value=24 Score=28.91 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=49.3
Q ss_pred hHHHHHhcCCCCcchHHHHHH----HHHHhhcC--ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017638 288 CPRLVELLGHPSPSVLIPALR----TVGNIVTG--DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~----~l~nl~~~--~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 361 (368)
.+.+..++.+++.-.+..+.. .++.+... .+.... .+++.+...+.++ +..+++.+.|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 445667778888777777776 44553211 222333 2355566677888 89999999999999998777
Q ss_pred HHhhh
Q 017638 362 DQIQV 366 (368)
Q Consensus 362 ~~i~~ 366 (368)
+....
T Consensus 184 ~~~~~ 188 (235)
T 1t06_A 184 PLHEK 188 (235)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 75543
No 177
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=35.27 E-value=1.7e+02 Score=23.34 Aligned_cols=141 Identities=9% Similarity=-0.038 Sum_probs=87.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017638 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
..+..+..++. -+.+..|+.++........+. .++.+-.++. -++..+....+.+++++....+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~~--------~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSLE--------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCHH--------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCHH--------HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 34455666666 788999998888765321111 1222223333 357788887777788776544431
Q ss_pred HhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH
Q 017638 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 278 (368)
Q Consensus 199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 278 (368)
..+.+..-. .+++.-+++.++-++..... . ......++.+..++.+++.-|+..+.|+|..++..+++.
T Consensus 125 ----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~---~---~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 125 ----LPTIFALFY-GAENFWNRRVALNLQLMLKE---K---TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG---G---CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH---C---CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 123344444 77888888887664421111 1 111335666666788888999999999999999888877
Q ss_pred HHHHHH
Q 017638 279 IQAVIE 284 (368)
Q Consensus 279 ~~~~~~ 284 (368)
...++.
T Consensus 194 v~~fl~ 199 (220)
T 2b6c_A 194 VEELMK 199 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655553
No 178
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=34.45 E-value=58 Score=24.25 Aligned_cols=86 Identities=8% Similarity=-0.051 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh
Q 017638 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL 337 (368)
Q Consensus 258 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll 337 (368)
+.|..-..||+-+.-. .. .++..+...+....+.-+.++++.+-.++..........+..++.+.+....
T Consensus 25 ~~I~~LT~~a~~~~~~-----a~-----~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~ 94 (144)
T 1sz9_A 25 PIITTLTKLAEENISC-----AQ-----YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTY 94 (144)
T ss_dssp HHHHHHHHHHHHTGGG-----HH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 5566666666665431 12 2344555555556688889999999999875443344567778888888888
Q ss_pred CCCCCccHHHHHHHHHH
Q 017638 338 THSHKKSIKKEACWTIS 354 (368)
Q Consensus 338 ~~~~~~~v~~~a~~~l~ 354 (368)
... ++.+|......+.
T Consensus 95 ~~~-d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 95 LLV-DNTTRTKLINMFK 110 (144)
T ss_dssp HTS-CHHHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHHHHH
Confidence 776 6677766555443
No 179
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=33.20 E-value=69 Score=23.76 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=32.4
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH-HHHHHH
Q 017638 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQAVIE 284 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~ 284 (368)
..+++.|.+-|.+.++.+...++.+|-+|+....+. ...+..
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 457888888888889999999999999999665444 344443
No 180
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=32.45 E-value=1e+02 Score=23.73 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHhc------CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHHH
Q 017638 279 IQAVIEAGVCPRLVELL------GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACW 351 (368)
Q Consensus 279 ~~~~~~~~~~~~L~~lL------~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~ 351 (368)
...+++.|++..+-.+| +-++..++...+.+|.++ +-..+.+..+|+-..++-+-.++. .+..|+-|-.
T Consensus 69 ~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~ 144 (170)
T 3nfq_A 69 ADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEK 144 (170)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHH
Q ss_pred HHHHHh
Q 017638 352 TISNIT 357 (368)
Q Consensus 352 ~l~nl~ 357 (368)
.+..-+
T Consensus 145 Li~~Ws 150 (170)
T 3nfq_A 145 LIAEWT 150 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
No 181
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.09 E-value=2.2e+02 Score=22.41 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=66.6
Q ss_pred ChHHHHHHhcc-----ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHhhcC
Q 017638 203 ALIPLLAQLNE-----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDG 274 (368)
Q Consensus 203 ~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~---d~~v~~~a~~~l~~l~~~ 274 (368)
.+|.++..+.. -.+.......+.....|..++.-.-......++|.++.++-.. ...++..|+..++.++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 46666665531 2367778888888888998865444455578888877766322 237999999999999854
Q ss_pred ChHHHHHHHHcCChHHHHHhcCCCC--cchHHHHHHHHHHh
Q 017638 275 TNDKIQAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNI 313 (368)
Q Consensus 275 ~~~~~~~~~~~~~~~~L~~lL~~~~--~~v~~~a~~~l~nl 313 (368)
...... -+...+...+.+.+.+++ ....--|+..+..+
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 211111 122345566666665543 33344444444443
No 182
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=25.31 E-value=4.9e+02 Score=25.60 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=63.5
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC---CCHHHHHHHHHHHHHhhc----CChHHHHHHHHc
Q 017638 213 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS---NDEEVLTDACWALSYLSD----GTNDKIQAVIEA 285 (368)
Q Consensus 213 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~---~d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~ 285 (368)
.+.+..+...+..++.+||.-.|......+.+++..+..-|.+ ..+.=...++.++..++. ...-. ..+.
T Consensus 349 fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr-~hl~-- 425 (799)
T 1vsy_4 349 QNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYR-VHIT-- 425 (799)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGG-GHHH--
T ss_pred CcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccH-HHHH--
Confidence 6778888999999999999876654455556666666666665 456666667777766652 11111 1111
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 286 ~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.++..++.-++..|+.-...++..+..+++
T Consensus 426 ~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 426 NVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 233444444566677666777888877764
No 183
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.51 E-value=87 Score=23.58 Aligned_cols=75 Identities=8% Similarity=-0.006 Sum_probs=42.9
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHH-HHHhhcCC--CCHHHHHHHHHHHHHHhcC
Q 017638 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR-FVEFLMRE--DYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~-Lv~lL~~~--~~~~v~~~a~~~L~~l~~~ 148 (368)
+++..+.+.|++ .++..++.|+..|..++.......-..+....++.. |+.++... ....|+..++..+...+..
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 345666666663 466666667766666654432222233334444543 56666532 2247888888888888763
No 184
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.80 E-value=1.6e+02 Score=21.78 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=43.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhc-CcHHHHHHhhcCCC-----C--HHHHHHHHHHHHHH
Q 017638 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMRED-----Y--PQLQFEAAWALTNI 145 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~-g~i~~Lv~lL~~~~-----~--~~v~~~a~~~L~~l 145 (368)
+.++.|.+-|++.++...++|+..|..++.......+..+... ..|..+.++=-.++ + ..||..|-.++..|
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3467778888888999999999999999765422333334332 22222222211122 1 35666666666655
Q ss_pred hc
Q 017638 146 AS 147 (368)
Q Consensus 146 ~~ 147 (368)
..
T Consensus 129 ~d 130 (140)
T 1vdy_A 129 FS 130 (140)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 185
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.59 E-value=40 Score=24.57 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 017638 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 317 (368)
Q Consensus 246 ~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 317 (368)
+...+.-|....+.+...+.|++.+.-.. .. ++..+.+.+....+.-+.+.++.+-.++..+
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~~~a-----~~-----Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENKKHH-----ST-----IVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTGGGH-----HH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhHHHH-----HH-----HHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 34444455555678999999999875421 11 2444555555556677888888888887543
No 186
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.94 E-value=1.3e+02 Score=21.68 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017638 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 246 ~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
+...+.-|....+.+...+.|++.+.-.. .. ++..+.+.+....+.-+.+.++.+-.++.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~~~~a-----~~-----iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHHRKHA-----GP-----IVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHTGGGH-----HH-----HHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 34444445566688999999999875421 11 23444555544455668888888888863
Done!