Query 017639
Match_columns 368
No_of_seqs 111 out of 124
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:41:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di0_A Activating signal coint 73.2 5.3 0.00018 31.4 5.0 37 52-89 14-59 (71)
2 1tpx_A Prion protein, major pr 65.6 4.1 0.00014 35.0 3.1 26 46-71 84-110 (121)
3 2e9x_A DNA replication complex 64.4 5.6 0.00019 33.9 3.8 47 62-110 72-119 (149)
4 2ozb_B U4/U6 small nuclear rib 54.4 7.1 0.00024 36.8 2.9 51 44-94 100-151 (260)
5 2es9_A Putative cytoplasmic pr 54.3 8.2 0.00028 32.5 2.9 42 74-116 55-105 (115)
6 3icx_A PRE mRNA splicing prote 50.0 9 0.00031 36.2 2.9 56 42-97 84-140 (255)
7 3hh0_A Transcriptional regulat 47.8 1E+02 0.0035 25.8 8.8 74 44-132 37-110 (146)
8 1b8z_A Protein (histonelike pr 44.6 18 0.00062 27.8 3.4 29 70-98 1-29 (90)
9 3doe_B ADP-ribosylation factor 43.5 16 0.00054 32.7 3.2 47 49-98 66-115 (165)
10 1mul_A NS2, HU-2, DNA binding 42.6 23 0.00078 27.2 3.7 28 70-97 1-28 (90)
11 2q9q_C DNA replication complex 38.7 35 0.0012 30.1 4.8 49 61-111 71-120 (196)
12 3gp4_A Transcriptional regulat 37.3 1.8E+02 0.0061 24.2 9.9 37 44-81 35-71 (142)
13 3pla_A NOP5, PRE mRNA splicing 36.9 19 0.00064 36.0 2.9 56 42-97 217-273 (388)
14 2o97_B NS1, HU-1, DNA-binding 36.5 27 0.00093 26.9 3.2 27 70-96 1-27 (90)
15 1owf_A IHF-alpha, integration 36.3 28 0.00097 27.3 3.4 29 70-98 3-31 (99)
16 2nnw_A NOP5/NOP56 related prot 35.9 17 0.00059 36.0 2.5 51 45-95 221-272 (376)
17 4hw4_A Induced myeloid leukemi 35.8 64 0.0022 27.9 5.8 52 54-116 4-69 (157)
18 1p71_A DNA-binding protein HU; 35.7 27 0.00091 27.1 3.1 28 70-97 1-28 (94)
19 3c4i_A DNA-binding protein HU 35.3 27 0.00092 27.5 3.1 28 70-97 1-28 (99)
20 3e98_A GAF domain of unknown f 34.9 9.9 0.00034 35.1 0.6 16 120-135 101-116 (252)
21 2iie_A Integration HOST factor 33.7 89 0.0031 27.9 6.6 50 48-97 17-74 (204)
22 1exe_A Transcription factor 1; 33.6 30 0.001 27.3 3.1 30 70-99 1-30 (99)
23 4e2i_2 DNA polymerase alpha su 32.1 27 0.00093 27.8 2.6 29 50-79 17-45 (78)
24 1q06_A Transcriptional regulat 31.6 2.1E+02 0.0073 23.4 10.3 78 44-133 33-110 (135)
25 2zhg_A Redox-sensitive transcr 30.6 2.4E+02 0.0083 23.7 8.7 78 44-132 43-120 (154)
26 2keb_A DNA polymerase subunit 30.3 40 0.0014 28.2 3.4 47 50-99 40-90 (101)
27 3rhi_A DNA-binding protein HU; 29.0 28 0.00095 27.1 2.2 28 69-96 3-30 (93)
28 1owf_B IHF-beta, integration H 28.1 48 0.0016 25.6 3.4 27 70-96 1-28 (94)
29 3gpv_A Transcriptional regulat 26.8 2.7E+02 0.0094 23.1 9.4 36 44-80 49-84 (148)
30 2jml_A DNA binding domain/tran 24.3 87 0.003 23.2 4.1 37 45-82 40-77 (81)
31 1dx0_A Prion protein; brain, r 24.0 48 0.0017 30.9 3.1 25 47-71 184-209 (219)
32 1g2h_A Transcriptional regulat 22.4 95 0.0033 22.2 3.9 35 59-100 23-57 (61)
33 2qia_A UDP-N-acetylglucosamine 21.9 1.5E+02 0.005 26.1 5.7 43 48-90 205-247 (262)
34 3hsq_A Acyl-[acyl-carrier-prot 21.0 81 0.0028 27.9 3.9 44 48-91 200-243 (259)
35 1gk6_A Vimentin; intermediate 20.6 2.1E+02 0.0071 20.9 5.4 34 93-126 19-52 (59)
36 3pkr_A FLIG, flagellar motor s 20.2 1.8E+02 0.0063 27.4 6.4 57 48-107 113-176 (279)
No 1
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=73.17 E-value=5.3 Score=31.37 Aligned_cols=37 Identities=30% Similarity=0.643 Sum_probs=31.1
Q ss_pred HHhHHHHHHH--------HHHHHHhh-cCHHHHHHHHHHhcCCCCcc
Q 017639 52 RQDIELVQNL--------IERCLQLY-MNRDEVVKTLLTRARIDPGF 89 (368)
Q Consensus 52 ~edI~~VQnL--------IErCLqly-Msk~Evv~~L~~~a~I~P~f 89 (368)
.+.|..|+.| |++||..| -+-|+||.+|.+. ++.|..
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L 59 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTL 59 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHH
Confidence 3688889876 89999999 8999999999975 566654
No 2
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=65.64 E-value=4.1 Score=35.04 Aligned_cols=26 Identities=15% Similarity=0.579 Sum_probs=21.9
Q ss_pred CCCcccHHhHHHHHHHH-HHHHHhhcC
Q 017639 46 DSRKVSRQDIELVQNLI-ERCLQLYMN 71 (368)
Q Consensus 46 ~~r~vS~edI~~VQnLI-ErCLqlyMs 71 (368)
..++.+..||+.+..|| |.|.++||-
T Consensus 84 ~~kn~te~e~rvl~rvi~emC~~qy~~ 110 (121)
T 1tpx_A 84 KGENFTETDIKIMERVVEQMCITQYQR 110 (121)
T ss_dssp HSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999 589999964
No 3
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=64.38 E-value=5.6 Score=33.91 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHhh-cCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHH
Q 017639 62 IERCLQLY-MNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYI 110 (368)
Q Consensus 62 IErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~ 110 (368)
+.|||.-| +.+-+-|+.+.-+.+ ..+...++..|-.+-.+||+.|..
T Consensus 72 nKrcLlAYl~~Rl~kI~~~~w~~g--~~L~~~~~~~LS~~E~~f~~~Y~~ 119 (149)
T 2e9x_A 72 NRRCTVAYLYDRLLRIRALRWEYG--SVLPNALRFHMAAEEMEWFNNYKR 119 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--SSCCHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--ccCChHHHhcCCHHHHHHHHHHHH
Confidence 46899998 567777887776654 244677889999999999999954
No 4
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=54.40 E-value=7.1 Score=36.79 Aligned_cols=51 Identities=14% Similarity=0.366 Sum_probs=45.1
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHH
Q 017639 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVW 94 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW 94 (368)
...++.+|.+|+..|+.+.++.+.++=-|+++.++|..+ ..|-|.+|.+|=
T Consensus 100 ~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG 151 (260)
T 2ozb_B 100 TTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIG 151 (260)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 345789999999999999999999999999999999988 558898888854
No 5
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=54.33 E-value=8.2 Score=32.48 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCcchHHH--HHHHHH-------HcHHHHHHHHHHHHHHH
Q 017639 74 EVVKTLLTRARIDPGFTTLV--WQKLEE-------ENADFFRAYYIRLKLKK 116 (368)
Q Consensus 74 Evv~~L~~~a~I~P~fT~~V--W~kLEe-------eNpeFFkaYy~Rl~LK~ 116 (368)
+.|.+--.|-+-+|+||..| |.+--+ .|||||..| .|-+||.
T Consensus 55 ~dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstY-M~eeLka 105 (115)
T 2es9_A 55 EVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTY-MQEQLKE 105 (115)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHH-HHHHHHH
T ss_pred HHHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHH-HHHHHHH
Confidence 44555667899999999987 544322 699999999 3444443
No 6
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=50.04 E-value=9 Score=36.16 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=47.9
Q ss_pred ccCCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHHHH
Q 017639 42 ASSNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQKL 97 (368)
Q Consensus 42 ~~~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW~kL 97 (368)
+....++.+|.+|+..|+.+.++.+.++=-|+++.++|+.+ ..|-|.+|.+|=..+
T Consensus 84 a~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~v 140 (255)
T 3icx_A 84 AKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPAL 140 (255)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHH
Confidence 34456788999999999999999999999999999999998 448999988876433
No 7
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=47.78 E-value=1e+02 Score=25.82 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=48.5
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHH
Q 017639 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNH 123 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~ 123 (368)
.+..|..+.+||..++ .|-.+..+-|+.+||-..|... ..-....|+.|+++ +-.|.+||.+...
T Consensus 37 ~~g~R~Y~~~dl~~l~-~I~~lr~~G~sl~~I~~~l~~~----~~~~~~~~~~L~~q----------~~~L~~~i~~l~~ 101 (146)
T 3hh0_A 37 EGGHRLYTKDDLYVLQ-QIQSFKHLGFSLGEIQNIILQR----DIETEVFLRQMHFQ----------REVLLAEQERIAK 101 (146)
T ss_dssp TTSCEEBCHHHHHHHH-HHHHHHHTTCCHHHHHHHHTSS----EEEHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_pred CCCCEeeCHHHHHHHH-HHHHHHHcCCCHHHHHHHHHcc----CCCHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 4567889999999986 4666778899999998887532 11223455555543 3356667766666
Q ss_pred HHHHHHhhh
Q 017639 124 LLEHQYHLM 132 (368)
Q Consensus 124 Lle~Q~~lm 132 (368)
+++.=.+++
T Consensus 102 ~l~~l~~~i 110 (146)
T 3hh0_A 102 VLSHMDEMT 110 (146)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665444433
No 8
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=44.58 E-value=18 Score=27.76 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.3
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 017639 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLE 98 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kLE 98 (368)
||+.|+++.+.++.++...-...|++.|.
T Consensus 1 mtk~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTIL 29 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 89999999999988887766666555443
No 9
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=43.54 E-value=16 Score=32.71 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=33.5
Q ss_pred cccHHhHHHHHHHHHHHHHh---hcCHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 017639 49 KVSRQDIELVQNLIERCLQL---YMNRDEVVKTLLTRARIDPGFTTLVWQKLE 98 (368)
Q Consensus 49 ~vS~edI~~VQnLIErCLql---yMsk~Evv~~L~~~a~I~P~fT~~VW~kLE 98 (368)
.|=.+|+.+|.++||.-|+- ..|.++++.+|+++ .-.+...||+.|-
T Consensus 66 ~I~~eY~~LVE~~Le~~L~e~i~Gfsme~F~~~l~~~---~~e~~~dIfe~Ll 115 (165)
T 3doe_B 66 PIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHH---KDEVAGDIFDMLL 115 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHTTT---CC--CCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc---chhhHHHHHHHHH
Confidence 34467888888888888877 67899999999865 3356666666554
No 10
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=42.59 E-value=23 Score=27.23 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 017639 70 MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (368)
||+.|+++.+.++.++...-...|++.|
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALEST 28 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999998887766555555444
No 11
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=38.72 E-value=35 Score=30.11 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHH
Q 017639 61 LIERCLQLY-MNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIR 111 (368)
Q Consensus 61 LIErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~R 111 (368)
-+.|||.-| +.+-+-|+.+.-+.+ ......++..|-.+-.+||+.|..-
T Consensus 71 R~Kr~l~aYlr~Rl~KI~~~~w~~~--~~l~~~~~~~LS~~E~~y~~~y~~l 120 (196)
T 2q9q_C 71 RNRRCTVAYLYDRLLRIRALRWEYG--SILPNALRFHMAAEEMEWFNNYKRS 120 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--SSCCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHhhCCHHHHHHHHHHHHH
Confidence 346899988 567777777766544 4445667889999999999999543
No 12
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.35 E-value=1.8e+02 Score=24.19 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=30.5
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 017639 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLT 81 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~ 81 (368)
.+..|..+.+||..++ +|-++-.+-|+.+||-+.|..
T Consensus 35 ~~g~R~Y~~~dl~~l~-~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 35 ESGVRKFGAEDLRWIL-FTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp TTSCBCBCHHHHHHHH-HHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHH-HHHHHHHcCCCHHHHHHHHHH
Confidence 4567899999999886 566778899999999887754
No 13
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=36.88 E-value=19 Score=36.00 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=48.2
Q ss_pred ccCCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHHHH
Q 017639 42 ASSNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQKL 97 (368)
Q Consensus 42 ~~~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW~kL 97 (368)
+....++.+|.+|+..|+.+.++.+.++=-|+++.++|+.+ ..|-|.+|.+|=..+
T Consensus 217 A~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~v 273 (388)
T 3pla_A 217 AKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPAL 273 (388)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHH
Confidence 34456789999999999999999999999999999999998 459999998876443
No 14
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=36.50 E-value=27 Score=26.88 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=19.2
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHH
Q 017639 70 MNRDEVVKTLLTRARIDPGFTTLVWQK 96 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~k 96 (368)
|||.|+++.|.++.++...-...|.+.
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~ 27 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRALDA 27 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 899999999998887766554444443
No 15
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=36.31 E-value=28 Score=27.29 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 017639 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLE 98 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kLE 98 (368)
|++.|+++.|.++.++...-...|++.|.
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~ 31 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFF 31 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999998887766666665543
No 16
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=35.88 E-value=17 Score=36.01 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=44.9
Q ss_pred CCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHH
Q 017639 45 NDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQ 95 (368)
Q Consensus 45 ~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW~ 95 (368)
..++.+|.+|+..|+.+.++.+.++=-|+++.++|..+ ..|-|.+|.+|=.
T Consensus 221 S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG~ 272 (376)
T 2nnw_A 221 TMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGA 272 (376)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCh
Confidence 35688999999999999999999999999999999988 5588988888544
No 17
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=35.84 E-value=64 Score=27.86 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHhhc--------------CHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 017639 54 DIELVQNLIERCLQLYM--------------NRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKK 116 (368)
Q Consensus 54 dI~~VQnLIErCLqlyM--------------sk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~ 116 (368)
-....+.||-+||+-++ .-.|++.+|.+ |=.+||+.++.+|+.+-.+|.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr~-----------vgdele~~~~~~f~~m~~~L~it~ 69 (157)
T 4hw4_A 4 LYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRR-----------VGDGVQRNHETAFQGMLRKLDIKN 69 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHHHHH-----------HHHHHHHHTHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCCCCCchHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35567888999999887 45677787764 457899999999999977766543
No 18
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=35.71 E-value=27 Score=27.12 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=20.3
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 017639 70 MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (368)
|||.|+++.|.++.++...-...|.+.|
T Consensus 1 M~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAA 28 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8899999999988877665555544433
No 19
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=35.34 E-value=27 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 017639 70 MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (368)
|||.|+++.|.++.++...-...|++.|
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~ 28 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENV 28 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8899999999888877666555555443
No 20
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=34.92 E-value=9.9 Score=35.09 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhcCC
Q 017639 120 LFNHLLEHQYHLMKYP 135 (368)
Q Consensus 120 ~FN~Lle~Q~~lm~~~ 135 (368)
.|+++.+-+..|+.-.
T Consensus 101 l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 101 LFDKTRRLVLDLLDAT 116 (252)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5677777777777654
No 21
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=33.73 E-value=89 Score=27.89 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=33.9
Q ss_pred CcccHHhHHHHHHHH-H-HHHHhh------cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 017639 48 RKVSRQDIELVQNLI-E-RCLQLY------MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (368)
Q Consensus 48 r~vS~edI~~VQnLI-E-rCLqly------Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (368)
..+++.|+..+=+.| | =|-.|+ |++.|+++.|.++.++...-...|++.|
T Consensus 17 ~~l~~~~v~~~Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~lsk~da~~vl~~l 74 (204)
T 2iie_A 17 SHIPAKTVEDAVKEMLEHMASTLAQGGSGGLTKAEMSEYLFDKLGLSKRDAKELVELF 74 (204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 457777777644443 3 344565 8999999999998887766555555443
No 22
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=33.60 E-value=30 Score=27.30 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=25.0
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 017639 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLEE 99 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kLEe 99 (368)
|||.|+++.|.++.++...-...|++.|.+
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~~ 30 (99)
T 1exe_A 1 MNKTELIKAIAQDTGLTQVSVSKMLASFEK 30 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999988877777765543
No 23
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=32.09 E-value=27 Score=27.81 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=24.3
Q ss_pred ccHHhHHHHHHHHHHHHHhhcCHHHHHHHH
Q 017639 50 VSRQDIELVQNLIERCLQLYMNRDEVVKTL 79 (368)
Q Consensus 50 vS~edI~~VQnLIErCLqlyMsk~Evv~~L 79 (368)
|.++| ..|..|+|-|+....+-+|+|..+
T Consensus 17 i~c~d-~v~eKl~ElC~~y~~~~~e~V~ew 45 (78)
T 4e2i_2 17 LDCEE-ALIEKLVELCVQYGQNEEGMVGEL 45 (78)
T ss_dssp CCCCH-HHHHHHHTHHHHSCCCHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44556 689999999999999999988765
No 24
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.64 E-value=2.1e+02 Score=23.36 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=49.3
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHH
Q 017639 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNH 123 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~ 123 (368)
.+..|..+.+||..++ .|-++-.+-|+.+||-+.|.... ++..+..-|.+ .++. .+-.|.+||.....
T Consensus 33 ~~g~R~Y~~~dl~~l~-~I~~lr~~G~sl~eI~~~l~~~~--~~~~~~~~~~~-------~l~~--~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 33 ENGYRTYTQQHLNELT-LLRQARQVGFNLEESGELVNLFN--DPQRHSADVKR-------RTLE--KVAEIERHIEELQS 100 (135)
T ss_dssp TTSCEECCHHHHHHHH-HHHHHHHTTCCHHHHHHHHHHHH--CTTCCHHHHHH-------HHHH--HHHHHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHH-HHHHHHHCCCCHHHHHHHHHhhh--cCCchHHHHHH-------HHHH--HHHHHHHHHHHHHH
Confidence 4566889999999887 46667889999999999886432 12223222222 2222 23456777777776
Q ss_pred HHHHHHhhhc
Q 017639 124 LLEHQYHLMK 133 (368)
Q Consensus 124 Lle~Q~~lm~ 133 (368)
+++.=..++.
T Consensus 101 ~~~~L~~~~~ 110 (135)
T 1q06_A 101 MRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655545443
No 25
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=30.59 E-value=2.4e+02 Score=23.69 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=48.8
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHH
Q 017639 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNH 123 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~ 123 (368)
.+..|..+.+||..++. |-++-.+-|+.+||-+.|.... -...-+...|..+-++ .+-.|.+||.....
T Consensus 43 ~~g~R~Y~~~dl~~l~~-I~~lr~~G~sl~eI~~~l~~~~-~~~~~~~~~~~~ll~~---------~~~~l~~qi~~L~~ 111 (154)
T 2zhg_A 43 SGNQRRYKRDVLRYVAI-IKIAQRIGIPLATIGEAFGVLP-EGHTLSAKEWKQLSSQ---------WREELDRRIHTLVA 111 (154)
T ss_dssp TTSCEEBCTTHHHHHHH-HHHHHHHTCCHHHHHHHHCC------CCCHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred CCCCEEeCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHhcc-ccCcccHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 35668899999999874 6677889999999998874211 1111233334443321 23468888887777
Q ss_pred HHHHHHhhh
Q 017639 124 LLEHQYHLM 132 (368)
Q Consensus 124 Lle~Q~~lm 132 (368)
+++.=.+++
T Consensus 112 ~~~~L~~~~ 120 (154)
T 2zhg_A 112 LRDELDGCI 120 (154)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 665444444
No 26
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.34 E-value=40 Score=28.16 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=31.7
Q ss_pred ccHHhHHHHHHHHHHHHHhhcCHHHHHHHHH----HhcCCCCcchHHHHHHHHH
Q 017639 50 VSRQDIELVQNLIERCLQLYMNRDEVVKTLL----TRARIDPGFTTLVWQKLEE 99 (368)
Q Consensus 50 vS~edI~~VQnLIErCLqlyMsk~Evv~~L~----~~a~I~P~fT~~VW~kLEe 99 (368)
|.++| ..|..++|-|+....+-+|.|..+- ...|++| |..-..++|.
T Consensus 40 i~~~d-~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~p--T~enL~~FEh 90 (101)
T 2keb_A 40 LDCEE-ALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGL--TSEILNSFEH 90 (101)
T ss_dssp CBCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBC--CHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Confidence 33444 5689999999999999999887542 2345555 4444455553
No 27
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=29.02 E-value=28 Score=27.11 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=16.6
Q ss_pred hcCHHHHHHHHHHhcCCCCcchHHHHHH
Q 017639 69 YMNRDEVVKTLLTRARIDPGFTTLVWQK 96 (368)
Q Consensus 69 yMsk~Evv~~L~~~a~I~P~fT~~VW~k 96 (368)
-|||.|+++.|.++.++...-...|++.
T Consensus 3 ~mtk~eLi~~ia~~~~lsk~~~~~~v~~ 30 (93)
T 3rhi_A 3 AMNKTELIKNVAQNAEISQKEATVVVQT 30 (93)
T ss_dssp ----CHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 3889999999988887765544444433
No 28
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=28.14 E-value=48 Score=25.61 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.4
Q ss_pred cCHHHHHHHHHHh-cCCCCcchHHHHHH
Q 017639 70 MNRDEVVKTLLTR-ARIDPGFTTLVWQK 96 (368)
Q Consensus 70 Msk~Evv~~L~~~-a~I~P~fT~~VW~k 96 (368)
||+.|+++.+.++ .++...-...|.+.
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~ 28 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKE 28 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 8999999999888 47766555544443
No 29
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.78 E-value=2.7e+02 Score=23.09 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=30.5
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 017639 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLL 80 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~ 80 (368)
.+..|..+.+||..++. |-++-.+-|+.+||-+.|.
T Consensus 49 ~~g~R~Y~~~dl~~l~~-I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 49 EKGDRIFNEEALKYLEM-ILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp TTCCEEBCHHHHHHHHH-HHHHHTTTCCHHHHHHHHH
T ss_pred CCCCeecCHHHHHHHHH-HHHHHHcCCCHHHHHHHHH
Confidence 45678899999999874 7777889999999998886
No 30
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=24.33 E-value=87 Score=23.24 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=30.1
Q ss_pred CCCCcccHHhHHHHHHHHHHHH-HhhcCHHHHHHHHHHh
Q 017639 45 NDSRKVSRQDIELVQNLIERCL-QLYMNRDEVVKTLLTR 82 (368)
Q Consensus 45 ~~~r~vS~edI~~VQnLIErCL-qlyMsk~Evv~~L~~~ 82 (368)
+..|..+.+||..++ .|-.+. .+-|+.+||.+.|...
T Consensus 40 ~g~R~Y~~~dl~~l~-~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 40 NNYRVYSREEVEAVR-RVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp SSSCEECHHHHHHHH-HHHHHHHHTSTHHHHHHHHHHHS
T ss_pred CCeeecCHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHcc
Confidence 566889999999886 466667 7899999999988654
No 31
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A
Probab=24.02 E-value=48 Score=30.94 Aligned_cols=25 Identities=20% Similarity=0.620 Sum_probs=17.0
Q ss_pred CCcccHHhHHHHHHHHH-HHHHhhcC
Q 017639 47 SRKVSRQDIELVQNLIE-RCLQLYMN 71 (368)
Q Consensus 47 ~r~vS~edI~~VQnLIE-rCLqlyMs 71 (368)
.++.+..|++.+..||| =|+++||.
T Consensus 184 ~kndte~~vrI~~rlI~emC~~qY~~ 209 (219)
T 1dx0_A 184 GENFTETDIKMMERVVEQMCITQYQR 209 (219)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777774 57777753
No 32
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.38 E-value=95 Score=22.16 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 017639 59 QNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEE 100 (368)
Q Consensus 59 QnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEee 100 (368)
+.+|++.|..+-++.++.+ ..||.+. ++|++|++-
T Consensus 23 r~~I~~aL~~~gn~~~aA~----~LGIsr~---tL~rklkk~ 57 (61)
T 1g2h_A 23 AQVLKLFYAEYPSTRKLAQ----RLGVSHT---AIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHSCSHHHHHH----HTTSCTH---HHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHH----HhCCCHH---HHHHHHHHh
Confidence 3455555655557776655 4578764 789998764
No 33
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=21.87 E-value=1.5e+02 Score=26.07 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=31.9
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcch
Q 017639 48 RKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFT 90 (368)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT 90 (368)
+.++.+++..++.....-+..-++.+|.++.|+++..=.|.+.
T Consensus 205 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (262)
T 2qia_A 205 RGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAETYPEVK 247 (262)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCGGGH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHH
Confidence 6788888888887777777777888888888877654445433
No 34
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=21.04 E-value=81 Score=27.88 Aligned_cols=44 Identities=5% Similarity=-0.016 Sum_probs=34.5
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchH
Q 017639 48 RKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTT 91 (368)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~ 91 (368)
|.++.++++.++...+.-++.-++.+|-++.|.++..-.|.+..
T Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (259)
T 3hsq_A 200 AGFSPEVRNAIKHAYKVIYHSGISTRKALDELEASGNLIEQVKY 243 (259)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHH
Confidence 56899999998888887777778899999999887665665443
No 35
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.59 E-value=2.1e+02 Score=20.93 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017639 93 VWQKLEEENADFFRAYYIRLKLKKQILLFNHLLE 126 (368)
Q Consensus 93 VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~Lle 126 (368)
+...++.++.||=.-..++++|--.|..|-+||+
T Consensus 19 ~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 19 LENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 6778888899998888999999999999999997
No 36
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=20.19 E-value=1.8e+02 Score=27.37 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=43.7
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCH-------HHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHH
Q 017639 48 RKVSRQDIELVQNLIERCLQLYMNR-------DEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRA 107 (368)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlyMsk-------~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFka 107 (368)
..|+.+-++.|-..+++||....++ +.+++.| + +++...-..|...|++++|++.+.
T Consensus 113 ~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~IL-N--~~d~~~e~~iL~~L~~~dpelAe~ 176 (279)
T 3pkr_A 113 GEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIF-N--RLGQKSAKTTLARIESVDNKLAGA 176 (279)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHH-H--TSCHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHH-H--cCChHHHHHHHHHHHhhCHHHHHH
Confidence 5789999999999999999987664 3344433 3 346666678999999999999876
Done!