BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017640
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 386 bits (992), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/305 (61%), Positives = 224/305 (73%), Gaps = 1/305 (0%)
Query: 47 LGHITRPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLS 106
L R DFPIL+QE+ G LVYLDNAATSQKP AVL+ L +YYE N+NVHRG H LS
Sbjct: 9 LAATVRQDFPILNQEING-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLS 67
Query: 107 AKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAE 166
+ATD YE R KVA FINA EIV+T+NATEAINLVAYSWG++NLK+GDE+I TV E
Sbjct: 68 VRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVME 127
Query: 167 HHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226
HHS +VPWQ+VA KTGA LKF+ L++ ES DL+ K +LS KTKLV + HISN L + P
Sbjct: 128 HHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP 187
Query: 227 IEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDL 286
EEI +H GAKVLVDACQS PH +DVQ +D D+LVAS HKMC PTGIGFL+GK ++
Sbjct: 188 AEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEI 247
Query: 287 LSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIH 346
L AMPPF GGGEMI++VF DH T + P +FEAGTP DYL+ +GM+ IH
Sbjct: 248 LEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIH 307
Query: 347 AYEVK 351
YEV+
Sbjct: 308 NYEVE 312
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VHRGIH LSA+AT+
Sbjct: 11 RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 69
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ + FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 70 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 129
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + KT+L+ I H+SN+L + P+ E++
Sbjct: 130 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 189
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 190 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 249
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
P+ GGG MI+ V L + +T+ P RFEAGTP +Y+S +G+ I YE
Sbjct: 250 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 308
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VHRGIH LSA+AT+
Sbjct: 9 RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ + FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 68 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + KT+L+ I H+SN+L + P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
P+ GGG MI+ V L + +T+ P RFEAGTP +Y+S +G+ I YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 2/299 (0%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VHRGIH LSA+AT+
Sbjct: 9 RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ + FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 68 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + KT+L+ I H+SN+L + P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
P+ GGG MI+ V L + +T+ P RFEAGTP +Y+S +G+ I YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 267 bits (682), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 189/299 (63%), Gaps = 2/299 (0%)
Query: 52 RPDFPILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATD 111
R DFP+L +EV G L YLD+AA++QKP V+ A +Y + VH G H LSA+AT+
Sbjct: 9 RADFPVLSREVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHAGAHTLSAQATE 67
Query: 112 EYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAI 171
+ E RK+ + FINA + E+VF + TE INLVA SWG SN+++GD +I++ EHH+ I
Sbjct: 68 KMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANI 127
Query: 172 VPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV 231
VPWQ++ + GA L+ + LN D + L+ L + T+L+ I H+SN+L + P+ E++
Sbjct: 128 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDAATRLLAITHVSNVLGTENPLAEMI 187
Query: 232 HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMP 291
+H GAKVLVD Q+V H VDVQ LD DF V S HK+ GPTGIG L+ K LL MP
Sbjct: 188 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMP 247
Query: 292 PFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXXDYLSTIGMQKIHAYE 349
P+ GGG MI+ V L + +T+ P RFEAGTP +Y+S +G+ I YE
Sbjct: 248 PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 13/235 (5%)
Query: 68 LVYLDNAATSQKPI--AVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125
+ Y D TS KP+ +L+A+ Y N +H KA + + AR+KVA +N
Sbjct: 1 MAYFD--YTSAKPVDERILEAMLPYMTESFGN-PSSVHSYGFKAREAVQEAREKVAKLVN 57
Query: 126 ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANL 185
G +VFT ATEA NL + + N + G ++++ EH S I P + + QK G +
Sbjct: 58 GG-GGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEV 115
Query: 186 KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVL--V 243
+++ + D+ + + L T LV + H +N + +I P+EEI S + K +
Sbjct: 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEI---SEVLAGKAALHI 172
Query: 244 DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298
DA SV + VDV+ + AD L SS+ + GP G+G L+ + + P LGGG+
Sbjct: 173 DATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKE-AKLQPVILGGGQ 226
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 6/232 (2%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
VY DN AT++ VL+ + +Y N + H + +A E AR+KVA + S
Sbjct: 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
S EI FT ATE+IN + + + K +I T EH + + + ++ K G +K++
Sbjct: 62 S-EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK-GFKVKYV 119
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV--DAC 246
++ L++L++++ T LV I +N + +I P+E++ + LV DA
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV 179
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298
Q++ + ++ L+ D+ S+HK GP G+G + + + P GGG+
Sbjct: 180 QTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG-VPIRPLIHGGGQ 230
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 6/232 (2%)
Query: 69 VYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASD 128
VY DN AT++ VL+ +Y N + H +A E AR+KVA + S
Sbjct: 3 VYFDNNATTRVDDRVLEEXIVFYREKYGNPNSA-HGXGIEANLHXEKAREKVAKVLGVSP 61
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
S EI FT ATE+IN + + + K +I T EH + + + ++ K G +K++
Sbjct: 62 S-EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETXKYLSXK-GFKVKYV 119
Query: 189 NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV--DAC 246
++ L++L++++ T LV I +N + +I P+E++ + LV DA
Sbjct: 120 PVDSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAV 179
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGE 298
Q++ + ++ L+ D+ S+HK GP G+G + + + P GGG+
Sbjct: 180 QTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG-VPIRPLIHGGGQ 230
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)
Query: 62 VYGSKKL-VYLDNAATSQKPIAVLKALQNYY--EAYNSNVHRGIHFLSAKATDEYELARK 118
VY + KL +YLD +AT+ V + + + + N H +A + ++AR
Sbjct: 16 VYRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARN 75
Query: 119 KVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVA 178
++A + A D EIVFT ATE+ NL K G +I + EH + + + +
Sbjct: 76 QIADLVGA-DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL- 133
Query: 179 QKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVG 238
++ G + +L + DL +L+ + T LV I H++N + + I I G
Sbjct: 134 EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG 193
Query: 239 AKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
VDA QSV + +D+ L D + S HK+ GP GIG L+
Sbjct: 194 IIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALY 236
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 4/215 (1%)
Query: 69 VYLDNAATSQKPIAVLKALQNYY--EAYNSNVHRGIHFLSAKATDEYELARKKVAAFINA 126
+YLD +AT+ V + + + + N H +A + ++AR ++A + A
Sbjct: 5 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 64
Query: 127 SDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLK 186
D EIVFT ATE+ NL K G +I + EH + + + + ++ G +
Sbjct: 65 -DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVT 122
Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
+L + DL +L+ + T LV I H++N + + I I G VDA
Sbjct: 123 YLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDAT 182
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLF 281
QSV + +D+ L D + S HK+ GP GIG L+
Sbjct: 183 QSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALY 217
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 5/176 (2%)
Query: 101 GIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEV 160
G H + ++ + AR+ VA +NA D G +V + ++L+A + S G EV
Sbjct: 59 GAHPSARRSAAVLDAAREAVADLVNA-DPGGVVLGADRAVLLSLLAEA-SSSRAGLGYEV 116
Query: 161 ILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLD--KLKEMLSRKTKLVVIHHIS 218
I++ + + I PW A + GA +K+ + D E+ +L + + ++S+ T+LV ++ S
Sbjct: 117 IVSRLDDEANIAPWLRAAHRYGAKVKWAEV-DIETGELPTWQWESLISKSTRLVAVNSAS 175
Query: 219 NMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGP 274
L + + + HDVGA V+VD + P+ ++D++ DAD + ++H GP
Sbjct: 176 GTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGP 231
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 22/278 (7%)
Query: 56 PILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL 115
P LHQ G Y + P L+A+ Y N G ++A + +
Sbjct: 6 PSLHQ-FPGLANKTYFNFGGQGILPTVALEAITAMYGYLQEN---GPFSIAANQHIQQLI 61
Query: 116 A--RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVP 173
A R+ +A N D I T N T ++V WGL + GDE++LT EH I
Sbjct: 62 AQLRQALAETFNV-DPNTITITDNVTTGCDIVL--WGL-DWHQGDEILLTDCEHPGIIAI 117
Query: 174 WQLVAQKTGANLKFL----NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEE 229
Q +A + G +F LN ++ + L L KT+LV++ H+ +LP+ E
Sbjct: 118 VQAIAARFGITYRFFPVAATLNQGDAAAV--LANHLGPKTRLVILSHLLWNTGQVLPLAE 175
Query: 230 IV----HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKS 284
I+ + +VLVD QS + +D L+ D+ + HK GP G+G L+
Sbjct: 176 IMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHG 235
Query: 285 DLLSAM-PPFLGGGEMISDVFLDHSTFADPPSRFEAGT 321
D L + P ++G + + + +A+ RFE T
Sbjct: 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVAT 273
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 16/215 (7%)
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL 176
R+ +A N D I T N T ++V WGL + GDE++LT EH I Q
Sbjct: 61 RQALAETFNV-DPNTITITDNVTTGCDIVL--WGL-DWHQGDEILLTDCEHPGIIAIVQA 116
Query: 177 VAQKTGANLKFL----NLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIV- 231
+A + G +F LN ++ + L L KT+LV++ H+ +LP+ EI+
Sbjct: 117 IAARFGITYRFFPVAATLNQGDAAAV--LANHLGPKTRLVILSHLLWNTGQVLPLAEIMA 174
Query: 232 ---HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLL 287
+ +VLVD QS + +D L+ D+ + H GP G+G L+ D L
Sbjct: 175 VCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHAWFAGPAGVGGLYIHGDCL 234
Query: 288 SAM-PPFLGGGEMISDVFLDHSTFADPPSRFEAGT 321
+ P ++G + + + +A+ RFE T
Sbjct: 235 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVAT 269
>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans
pdb|3VAX|B Chain B, Crytal Structure Of Dnda From Streptomyces Lividans
Length = 400
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 11/238 (4%)
Query: 68 LVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINAS 127
+ YLD AAT++ V + ++ A N H +A E AR+ +A+ ++A
Sbjct: 21 MTYLDAAATTRVDQRVADIVLHWMTAEFGNAG-SRHEYGIRAKRGVERAREYLASTVSA- 78
Query: 128 DSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVA-EHHSAIVPWQLVAQKTGANLK 186
+ E++FT ATE+ N+ ++G I+T A EH + + P + +A + G +
Sbjct: 79 EPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGR-GFEVD 137
Query: 187 FLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDAC 246
FL ++ + E L T LV + H++N I P+ E+ + VDA
Sbjct: 138 FLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAA 197
Query: 247 QSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKS------DLLSAMPPFLGGGE 298
Q + D+ D + S HK+ P G+G L + + + P GGG+
Sbjct: 198 QGYGKVPGDLT-TPIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQ 254
>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|B Chain B, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|D Chain D, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 109/263 (41%), Gaps = 33/263 (12%)
Query: 66 KKLVYLD-NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124
++ VY+D NA T +P + + +EA+ + + KA D AR+ +A I
Sbjct: 24 ERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP--SSPYSAGRKAKDIINAARESLAKMI 81
Query: 125 NASDSGEIVFTKNATEAINLVAYS----WGLSNLKSG-------------DEVILTVAEH 167
+I+FT TE+ NLV +S + + G I + EH
Sbjct: 82 GGKPQ-DIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH 140
Query: 168 HSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226
S +P + + ++ A + F+ ++ ++D + + T+LV I +N ++P
Sbjct: 141 DSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMP 200
Query: 227 IEEIVHW-----SHDVGAK-----VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT- 275
+ EI V A V DA Q++ VDV+ L DFL HK GP
Sbjct: 201 VPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRI 260
Query: 276 GIGFLFGKSDLLSAMPPFLGGGE 298
G ++ G + P GGG+
Sbjct: 261 GALYIRGLGEFTPLYPMLFGGGQ 283
>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase
pdb|3GZC|B Chain B, Structure Of Human Selenocysteine Lyase
pdb|3GZD|C Chain C, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 109/263 (41%), Gaps = 33/263 (12%)
Query: 66 KKLVYLD-NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFI 124
++ VY+D NA T +P + + +EA+ + + KA D AR+ +A I
Sbjct: 24 ERKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP--SSPYSAGRKAKDIINAARESLAKMI 81
Query: 125 NASDSGEIVFTKNATEAINLVAYS----WGLSNLKSG-------------DEVILTVAEH 167
+I+FT TE+ NLV +S + + G I + EH
Sbjct: 82 GGKPQ-DIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEH 140
Query: 168 HSAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILP 226
S +P + + ++ A + F+ ++ ++D + + T+LV I +N ++P
Sbjct: 141 DSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMP 200
Query: 227 IEEIVHW-----SHDVGAK-----VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPT- 275
+ EI V A V DA Q++ VDV+ L DFL HK GP
Sbjct: 201 VPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPRI 260
Query: 276 GIGFLFGKSDLLSAMPPFLGGGE 298
G ++ G + P GGG+
Sbjct: 261 GALYIRGLGEFTPLYPMLFGGGQ 283
>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9X|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9Y|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Y|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Z|A Chain A, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
pdb|3A9Z|B Chain B, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
Length = 432
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 35/263 (13%)
Query: 67 KLVYLD-NAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFIN 125
+ VY+D NA T +P + + EA+ + + KA D AR +A I
Sbjct: 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSS--YVAGRKAKDIINTARASLAKMIG 75
Query: 126 ASDSGEIVFTKNATEAINLVAYS-------WGLSNLKSGDEV----------ILTVAEHH 168
+I+FT TE+ NLV +S ++ D++ I EH
Sbjct: 76 GKPQ-DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHD 134
Query: 169 SAIVPWQLVAQKTGANLKFLNLND-DESPDLDKLKEMLSRKTKLVVIHHISNMLASILPI 227
S +P + + + A + F+ ++ + +++ + + T LV I +N I+PI
Sbjct: 135 SIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPI 194
Query: 228 EEI---VHWSHDVGA-----KVLV--DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGI 277
EI + + + A +VLV DA Q++ VDV+ L DFL HK GP I
Sbjct: 195 SEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-I 253
Query: 278 GFLF--GKSDLLSAMPPFLGGGE 298
G L+ G L P GGG+
Sbjct: 254 GALYVRGVGKLTPLYPMLFGGGQ 276
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
+G IVF+ + ++ S L E ++ A+ H++I + Q N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ DLDK L + KLVV+ + +ML I P++E+V + GA VLVD
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
S+ V + QGL+ DF+V + K G G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG-GFV 273
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
+G IVF+ + ++ S L E ++ A+ H++I + Q N + +
Sbjct: 126 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 174
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ DLDK L + KLVV+ + +ML I P++E+V + GA VLVD
Sbjct: 175 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 234
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
S+ V + QGL+ DF+V + K G G GF+
Sbjct: 235 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG-GFV 274
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
+G IVF+ + ++ S L E ++ A+ H++I + Q N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ DLDK L + KLVV+ + +ML I P++E+V + GA VLVD
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
S+ V + QGL+ DF+V + K G G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG-GFV 273
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
+G IVF+ + ++ S L E ++ A+ H++I + Q N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ DLDK L + KLVV+ + +ML I P++E+V + GA VLVD
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
S+ V + QGL+ DF+V + G G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 273
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
+G IVF+ + ++ S L E ++ A+ H++I + Q N + +
Sbjct: 126 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 174
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ DLDK L + KLVV+ + +ML I P++E+V + GA VLVD
Sbjct: 175 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 234
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
S+ V + QGL+ DF+V + G G GF+
Sbjct: 235 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 274
>pdb|1QZ9|A Chain A, The Three Dimensional Structure Of Kynureninase From
Pseudomonas Fluorescens
Length = 416
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 24/250 (9%)
Query: 58 LHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYY-EAYNSNVHRGIHFLSAKATDEYELA 116
L Q+ + ++YLD + +P+A L Q E + + + R + SA D E
Sbjct: 19 LRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWN--SAGWRDLSERL 76
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIV---- 172
++A I A D GE+V T T +INL L + V T + IV
Sbjct: 77 GNRLATLIGARD-GEVVVTD--TTSINL------FKVLSAALRVQATRSPERRVIVTETS 127
Query: 173 --PWQLVAQKTGANL--KFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIE 228
P L + A++ + L +SP+ +L + + + T +V++ H++ + ++
Sbjct: 128 NFPTDLYIAEGLADMLQQGYTLRLVDSPE--ELPQAIDQDTAVVMLTHVNYKTGYMHDMQ 185
Query: 229 EIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMC--GPTGIGFLFGKSDL 286
+ SH+ GA + D S + VD+ AD+ + ++K GP F++ L
Sbjct: 186 ALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL 245
Query: 287 LSAMPPFLGG 296
+P L G
Sbjct: 246 CDLVPQPLSG 255
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
+G IVF+ + ++ S L E ++ A+ H++I + Q N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ DLDK L + KLVV+ + +ML I P++E+V + GA VLVD
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
S+ V + QGL+ DF+V + G G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 273
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 129 SGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFL 188
+G IVF+ + ++ S L E ++ A+ H++I + Q N + +
Sbjct: 125 TGAIVFSTGYMANLGII------STLAGKGEYVILDADSHASI--YDGCQQ---GNAEIV 173
Query: 189 NLNDDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+ DLDK L + KLVV+ + +ML I P++E+V + GA VLVD
Sbjct: 174 RFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 248 SVPHM------VVDVQGLDA--DFLVASSHKMCGPTGIGFL 280
S+ V + QGL+ DF+V + G G GF+
Sbjct: 234 SMGFFGPNGRGVYEAQGLEGQIDFVVGTFSXSVGTVG-GFV 273
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 133 VFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL---VAQKTGANLKFLN 189
V T AI+LV + LK GD L VA H ++L +A++ + F++
Sbjct: 71 VLTNTGMSAIHLVTTVF----LKPGD---LLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123
Query: 190 LNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVD 244
D+++ L+ L+ K KLV++ SN L ++ I +I H + +VGA +VD
Sbjct: 124 QGDEQA-----LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD 173
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL 176
+K V+ +I+ T AT A LV YS ++ GD VI + QL
Sbjct: 69 KKSVSQLYTGVKPEQILQTNGATGANLLVLYSL----IEPGDHVISLYPTYQ------QL 118
Query: 177 --VAQKTGANLKFLNLNDDES--PDLDKLKEMLSRKTKLVVIHHISNMLASILP---IEE 229
+ + GA + + ++ PDL+KL++++ TK + I++ +N ++ +EE
Sbjct: 119 YDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKXICINNANNPTGAVXDRTYLEE 178
Query: 230 IVHWSHDVGAKVLVD 244
+V + +VGA +L D
Sbjct: 179 LVEIASEVGAYILSD 193
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 114 ELARKKVAAFIN---ASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSA 170
E R ++A + +S +I FT + TE NL+ + N GD + ++ EH S
Sbjct: 53 ETVRAQIATALGITLSSREYDITFTSSGTEGNNLI-----MKNFYDGD-IFISAIEHLSI 106
Query: 171 IVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT---KLVVIHHISNMLASILPI 227
N+K +++N DL+ L+E+L++ KLV I +N + I
Sbjct: 107 YNHINY-----APNIKVISVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNESGVLQDI 161
Query: 228 EEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLL 287
EI + AK D Q + ++++ L DF S H + G G L S+
Sbjct: 162 AEIGKITKKYEAKFHSDLVQGFGRIPINIKALGLDFATISGHXIGGGQGGAALISSSN-F 220
Query: 288 SAMPPFLGGGE 298
P +GGG+
Sbjct: 221 QITPMIIGGGQ 231
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 21/157 (13%)
Query: 132 IVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLN 191
IVF+ + +++ G GD +IL H S L + + +
Sbjct: 108 IVFSTGYQANLGMISTLAG-----KGDYIILDADSHASIYDGCWL------GDAEIVRFR 156
Query: 192 DDESPDLDK-LKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVP 250
+ DLDK L + + KLVV+ + +M+ I P++E+V S GA +LVD +
Sbjct: 157 HNSVEDLDKRLGRLPAEAGKLVVLEGVYSMMGDIAPLQEMVAVSKKHGAMILVDEAHGMG 216
Query: 251 HMVVDVQGL--------DADFLVASSHKMCGPTGIGF 279
+G+ D DF+V + G G GF
Sbjct: 217 FFGEHGRGVFEEAGVEADVDFVVGTFSXSVGTVG-GF 252
>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2EGY|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Substrate Free Form), From Thermus
Thermophilus Hb27
pdb|2ZP7|C Chain C, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|D Chain D, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|F Chain F, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|3CBF|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|3CBF|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase, From Thermus Thermophilus Hb27
pdb|2Z1Y|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2Z1Y|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Leucine), From Thermus
Thermophilus Hb27
pdb|2ZP7|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZP7|E Chain E, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Leucine Complex), From Thermus
Thermophilus Hb27
pdb|2ZYJ|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
pdb|2ZYJ|B Chain B, Crystal Structure Of Lysn, Alpha-Aminoadipate
Aminotransferase (Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate), From Thermus
Thermophilus Hb27
Length = 397
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 105 LSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTV 164
L T+ Y R VA +I E++ T + +A++LV + L G V+L
Sbjct: 68 LQYSPTEGYAPLRAFVAEWIGVRPE-EVLITTGSQQALDLVGKVF----LDEGSPVLLEA 122
Query: 165 AEHHSAIVPWQLVAQKTGANLKFLNL-NDDESPDLDKLKEMLSRKTK--LVVIHHISNML 221
+ AI ++L + FL + +E PDLD L+E+L R+ L +I N
Sbjct: 123 PSYMGAIQAFRLQGPR------FLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPT 176
Query: 222 ASILPI 227
+ P+
Sbjct: 177 GGLTPL 182
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 196 PDLDKLKEMLSRKTKL--VVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV 253
PD+ + +L+ + + H + PI+E+ +H G +VDA S +
Sbjct: 117 PDVQAIDAILNADPTISHIAXVHSETTTGXLNPIDEVGALAHRYGKTYIVDAXSSFGGIP 176
Query: 254 VDVQGLDADFLVASSHK-MCGPTGIGFLFGKSDLLSA 289
D+ L D+L++S++K + G G F+ + L+A
Sbjct: 177 XDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAA 213
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 197 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDV 256
DLD ++ + T+L+ + +N L SI I I D AKVLVD + P + +
Sbjct: 140 DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPL 199
Query: 257 QGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS 308
L AD ++ S+ G G SD+ +GG + +D LD S
Sbjct: 200 S-LGADVVLHSTTXYIG--------GHSDV-------VGGALVTNDEELDQS 235
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 136 KNATEAINLVAYSWGLSNL--------KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKF 187
KN T A+ ++A G++ + ++GD V+ T + +Q G ++F
Sbjct: 92 KNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRF 151
Query: 188 LNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQ 247
+++ D + ++ TKL+ + ISN + +E + H G ++VD
Sbjct: 152 VDVMDSLA-----VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTM 206
Query: 248 SVPHMVVDVQGLDADFLVASSHKM 271
+ P++ ++ + L D V SS K
Sbjct: 207 TPPYL-LEAKRLGVDIEVLSSTKF 229
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 180 KTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGA 239
K G N++F++ E +++ + +TK+V I +N S++ IE + +H GA
Sbjct: 126 KFGINVRFVDAGKPE-----EIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 240 KVLVDACQSVPHMVVDVQGLDADFLVAS 267
++VD P+ +Q L AD +V S
Sbjct: 181 LLVVDNTFMSPYCQQPLQ-LGADIVVHS 207
>pdb|2YRI|A Chain A, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRI|B Chain B, Crystal Structure Of Alanine-pyruvate Aminotransferase
With 2- Methylserine
pdb|2YRR|A Chain A, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
pdb|2YRR|B Chain B, Hypothetical Alanine Aminotransferase (Tth0173) From
Thermus Thermophilus Hb8
Length = 353
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 117 RKKVAAFINASDSGEIVFTKNATEAINLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQL 176
++++AA + + G +V + ++ + A GL+NL G ++L +
Sbjct: 39 QERLAALFDPGE-GALVAALAGSGSLGMEA---GLANLDRGPVLVLVNGAFSQRVAE--- 91
Query: 177 VAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSH 235
+A G + + L+ E D + + L R+ ++V + H + P E I +
Sbjct: 92 MAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAK 151
Query: 236 DVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK-MCGPTGI 277
+ GA +DA ++ + ++ + D+ S K + P G+
Sbjct: 152 EAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGL 194
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 180 KTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGA 239
K G N+ F++ E +++ + +TK+V I +N S++ IE + +H GA
Sbjct: 126 KFGINVSFVDAAKPE-----EIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 240 KVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTG---IGFLFGKSDLL 287
++VD P+ +Q L AD +V S K G G + GK + +
Sbjct: 181 LLVVDNTFMSPYXQQPLQ-LGADIVVHSVTKYINGHGDVIGGIIVGKQEFI 230
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 180 KTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGA 239
K G N++F++ E +++ + +TK+V I +N S++ IE + +H GA
Sbjct: 126 KFGINVRFVDAAKPE-----EIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 240 KVLVDACQSVPHMVVDVQGLDADFLVAS 267
++VD P+ +Q L AD +V S
Sbjct: 181 LLVVDNTFMSPYCQQPLQ-LGADIVVHS 207
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
+K+G+E++ + + V ++G +K +N + LD++ + +TKLV
Sbjct: 168 IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN-----TTKLDEVAAAIGPQTKLVW 222
Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCG 273
+ +N I I +I +H GA VLVD P + ++ L AD ++ S+ K
Sbjct: 223 LESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE-LGADIVMHSATK--- 278
Query: 274 PTGIGFLFGKSDLLSAM 290
F+ G SD+++ +
Sbjct: 279 -----FIAGHSDVMAGV 290
>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
Length = 416
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 33/160 (20%)
Query: 118 KKVAAFINASDSGEIVFTKNATEAINLVAYSWGLS-----NLKSG---DEVILTVAEHHS 169
KK+ I++ + T + EA VA W S LKS D V+L H
Sbjct: 57 KKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHG 116
Query: 170 --------------AIVP------WQLVAQKTGANLKFLNLN--DDESPDLDKLKEMLSR 207
A+VP ++ V + G + F N +D DLD+++ +
Sbjct: 117 ILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD 176
Query: 208 KTKLVVIHHISNMLASILP---IEEIVHWSHDVGAKVLVD 244
KTKL+++ + SN S +E+IV + ++ + D
Sbjct: 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSD 216
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 180 KTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGA 239
K G N+ F++ E +++ + +TK+V I +N S++ IE + +H GA
Sbjct: 126 KFGINVSFVDAAKPE-----EIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 240 KVLVDACQSVPHMVVDVQGLDADFLVAS 267
++VD P+ +Q L AD +V S
Sbjct: 181 LLVVDNTFMSPYCQQPLQ-LGADIVVHS 207
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 180 KTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGA 239
K G N+ F++ E +++ + +TK+V I +N S++ IE + +H GA
Sbjct: 126 KFGINVSFVDAAKPE-----EIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 240 KVLVDACQSVPHMVVDVQGLDADFLVAS 267
++VD P+ +Q L AD +V S
Sbjct: 181 LLVVDNTFMSPYCQQPLQ-LGADIVVHS 207
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 83 VLKALQNYYEAYNSNVHRGIHFLSAKATDEYELARKKVAAFINASDSGEIVFTKNATEAI 142
++KA Q+ E Y + G FL+ EL +K++A++ I+F+ +
Sbjct: 62 IIKAAQDALEKYGTGC-AGSRFLNGTLDIHVEL-EEKLSAYVGKE--AAILFSTGFQSNL 117
Query: 143 NLVAYSWGLSNLKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLK 202
LS L ++ IL H++I+ G+ L F + +++ L+
Sbjct: 118 G------PLSCLMGRNDYILLDERDHASIID--------GSRLSFSKVIKYGHNNMEDLR 163
Query: 203 EMLSR----KTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQG 258
LSR KL+ I +M I+ + E+ +++ A V+VD S+ V+ +G
Sbjct: 164 AKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLG--VIGHKG 221
Query: 259 L----------DADFLVASSHKMCGPTGIGFLFGKSDLL 287
D D ++ + K G GF+ G +D++
Sbjct: 222 AGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVI 259
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 197 DLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
+ D L+ ++ R ++V+ I + L +I P+ E+V+ S + G +LVD S+
Sbjct: 154 NCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSL 207
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 197 DLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
+ D L+ ++ R ++V+ I + L +I P+ E+V+ S + G +LVD S+
Sbjct: 174 NCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSL 227
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 197 DLDKLKEMLSRKT-KLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSV 249
+ D L+ ++ R ++V+ I + L +I P+ E+V+ S + G +LVD S+
Sbjct: 154 NCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSL 207
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 155 KSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVVI 214
+ GDEV+ I + V G +++++ P+ + ++E LS KT+ V +
Sbjct: 93 RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVD------PEPEAVREALSAKTRAVFV 146
Query: 215 HHISNMLASILPIEEIVHWSHDVGAKVLVD 244
++N + +E + + + G ++VD
Sbjct: 147 ETVANPALLVPDLEALATLAEEAGVALVVD 176
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 160 VILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSR---KTK------ 210
V++ H+S+ V A++ G N+ + D PD E ++ +TK
Sbjct: 96 VVMDENCHYSSYV----AAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRGEVV 149
Query: 211 LVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHK 270
L +I + ++ +++I + +LV+ ++ M V ++ + ADF+V S HK
Sbjct: 150 LALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHK 209
Query: 271 ---MCGPTGI 277
GP G+
Sbjct: 210 SMAASGPIGV 219
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMV 253
++ D++K+K TK+V + +N + I+ I H+ GA+++VDA + P +
Sbjct: 130 DTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL 189
Query: 254 VDVQGLDADFLVASSHK 270
++ L AD + S K
Sbjct: 190 KPLE-LGADIALHSVSK 205
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 194 ESPDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVP 250
++ D++K+K TK+V + +N + I+ I H+ GA+++VDA + P
Sbjct: 130 DTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSP 186
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
LK+GD++I + ++ VA + G + F++ + + L+ ++ +TKLV
Sbjct: 102 LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSK-----IKLLEAAITPETKLVW 156
Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLV 243
I +N ++ IE H H G +LV
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILV 186
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 154 LKSGDEVILTVAEHHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKTKLVV 213
LK+GD++I + ++ VA + G + F++ + + L+ ++ +TKLV
Sbjct: 106 LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSK-----IKLLEAAITPETKLVW 160
Query: 214 IHHISNMLASILPIEEIVHWSHDVGAKVLV 243
I +N ++ IE H H G +LV
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILV 190
>pdb|3I16|A Chain A, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|B Chain B, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|C Chain C, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|D Chain D, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
Length = 427
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 182 GANLKFLNLNDDESPDLDKLKEMLSRKTKLVVIHHISNMLAS------ILPIEEIVHWSH 235
G N K ++L +D P+L++++++L + ++H + I I+ IV
Sbjct: 148 GINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVK 207
Query: 236 DVGAKVL--VDACQSVPHMVVDVQGLDADFLVASSHKMCG----PTGIGFLFGKSDLLSA 289
++ ++ VD C + + AD + S K G PTG G+L G D +
Sbjct: 208 NIRKDIICFVDNCYGEFXDTKEPTDVGADLIAGSLIKNIGGGIAPTG-GYLAGTKDCIEK 266
Query: 290 MP-----PFLGG 296
P +GG
Sbjct: 267 TSYRLTVPGIGG 278
>pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|B Chain B, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|C Chain C, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|D Chain D, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFG|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain Bound To A Benzoxaborole-Amp
Adduct
Length = 261
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 56 PILHQEVYGSKKLVYLDNAATSQKPIAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYEL 115
PI+H E YG K +L N Q P ++ AY + G + D+ E
Sbjct: 172 PIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVED 231
Query: 116 ARKKV 120
A+ KV
Sbjct: 232 AKPKV 236
>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
Length = 392
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 152 SNLKSGDEVILTVAE--HHSAIVPWQLVAQKTGANLKFLNLNDDESPDLDKLKEMLSRKT 209
++L S D+V+L +A + W A++ +L + + +E+ D + +ML
Sbjct: 77 ASLISPDDVVLNLASGVYGKGFGYW---AKRYSPHLLEIEVPYNEAIDPQAVADMLKAHP 133
Query: 210 KLVVIH--HISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVAS 267
++ V+ H +I PI+ I GA ++VDA S M + AD V
Sbjct: 134 EITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTG 193
Query: 268 SHKMCG-PTGIGFL 280
+K G P G+ +
Sbjct: 194 PNKCLGAPPGLTMM 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,740,559
Number of Sequences: 62578
Number of extensions: 353010
Number of successful extensions: 961
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 61
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)