BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017641
         (368 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q25|A Chain A, Crystal Structure Of N-terminal 3 Domains Of Ci-mpr
 pdb|1SYO|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
 pdb|1SYO|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
 pdb|1SZ0|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
 pdb|1SZ0|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
          Length = 432

 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 129 RGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVG 188
           RG+   +VG  +EGLK+ S D + L++   KEG G P         F +G +P V I   
Sbjct: 200 RGDRAFDVGRPQEGLKLVSNDRLVLSYV--KEGAGQP--------DFCDGHSPAVTITFV 249

Query: 189 DTSKFGESTVLRPGPKQEENLEF 211
             S+  E T+  P    + N  F
Sbjct: 250 CPSERREGTI--PKLTAKSNCRF 270


>pdb|2L21|A Chain A, Chicken Igf2r Domain 11
          Length = 154

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 263 AYKKSVGLNVDPKLKSECEK----ALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 313
           ++ + + LNV  + KS C       + DG   +++GKL + L + ++V+ K+V++
Sbjct: 36  SHNRKIELNVCAEAKSSCANGAAVCITDGPKTLNAGKLSKTLTYEDQVL-KLVYE 89


>pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group
          Length = 161

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 267 SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYE 304
           SV LNVDP L+ +   AL + D +  +   K  LP ++
Sbjct: 3   SVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQ 40


>pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group
          Length = 161

 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 267 SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYE 304
           SV LNVDP L+ +   AL + D +  +   K  LP ++
Sbjct: 3   SVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQ 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.130    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,754,181
Number of Sequences: 62578
Number of extensions: 464470
Number of successful extensions: 787
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 8
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)