BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017641
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P47418|AMPM_MYCGE Methionine aminopeptidase OS=Mycoplasma genitalium (strain ATCC
           33530 / G-37 / NCTC 10195) GN=map PE=3 SV=1
          Length = 248

 Score = 35.0 bits (79), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 115 SFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDP 174
           +  N   + F+ +G   L KE GG   G+KI   D + LN+ +K +G  L  G+V   +P
Sbjct: 146 NLSNAIQTYFENKGYF-LVKEFGGHGCGIKIHE-DPLILNWGEKNQGVRLQEGMVICIEP 203

Query: 175 FAEGDTPEVEI 185
               D+ E+ +
Sbjct: 204 MVMTDSSEITM 214


>sp|B0THN3|ATPG_HELMI ATP synthase gamma chain OS=Heliobacterium modesticaldum (strain
           ATCC 51547 / Ice1) GN=atpG PE=3 SV=1
          Length = 290

 Score = 35.0 bits (79), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 39  NATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVAR 98
           +A S  D    QP+    P PEA LD +   + + + YR L ES +    EQ        
Sbjct: 194 SANSAKDSKGPQPLYAFEPSPEAVLDELLPKYVENQIYRALLESKAS---EQGARMTAMG 250

Query: 99  AAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGG 138
           +A + AKE   NK T+SF     +    E    + + VGG
Sbjct: 251 SATDNAKEM-INKLTLSFNRARQAAITKE----ISEVVGG 285


>sp|C5BMR1|RECA_TERTT Protein RecA OS=Teredinibacter turnerae (strain ATCC 39867 / T7901)
           GN=recA PE=3 SV=1
          Length = 342

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 22/123 (17%)

Query: 192 KFGESTVLRPGPKQEENLEFYKPKVST--------WGVFPRP-GNISKTFG---GGRTIR 239
           +FG+ TV+R G K+ E +    P VST         G+   P G I + +G    G+T  
Sbjct: 19  QFGKGTVMRMGDKELEAI----PAVSTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTL 74

Query: 240 PGDVLETAEAR---AAKEERTRQLLAAYKKSVGLNVDPKLKSE---CEKALKDGDSLMDS 293
              V+  A+ +    A  +    L   Y   +G+NVD  + S+    E+AL+  D L+ S
Sbjct: 75  TLQVIAEAQRKGGTCAFVDAEHALDPIYAAKLGVNVDDLIVSQPDTGEQALEVADMLVRS 134

Query: 294 GKL 296
           G +
Sbjct: 135 GAI 137


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.128    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,629,666
Number of Sequences: 539616
Number of extensions: 6561743
Number of successful extensions: 17051
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 16710
Number of HSP's gapped (non-prelim): 324
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)