Query 017641
Match_columns 368
No_of_seqs 67 out of 69
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 10:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13432 TPR_16: Tetratricopep 98.2 5E-06 1.1E-10 60.4 7.1 62 284-349 1-63 (65)
2 PF14559 TPR_19: Tetratricopep 98.1 1.3E-05 2.8E-10 58.2 6.9 61 290-354 1-63 (68)
3 TIGR02795 tol_pal_ybgF tol-pal 97.9 8.3E-05 1.8E-09 57.2 9.3 78 280-358 39-117 (119)
4 PF13525 YfiO: Outer membrane 97.9 5.9E-05 1.3E-09 67.4 9.5 75 279-354 4-79 (203)
5 TIGR02795 tol_pal_ybgF tol-pal 97.9 9.7E-05 2.1E-09 56.8 9.3 69 280-349 2-71 (119)
6 PF13414 TPR_11: TPR repeat; P 97.8 8.5E-05 1.8E-09 54.1 6.4 62 280-345 3-65 (69)
7 PRK10803 tol-pal system protei 97.7 0.00031 6.8E-09 66.7 10.8 87 274-361 174-261 (263)
8 PF13512 TPR_18: Tetratricopep 97.7 0.00021 4.6E-09 63.5 8.3 70 280-350 10-80 (142)
9 PF13424 TPR_12: Tetratricopep 97.6 0.00034 7.3E-09 52.3 6.9 65 280-344 5-72 (78)
10 PRK10866 outer membrane biogen 97.5 0.00054 1.2E-08 63.9 8.4 72 279-351 31-103 (243)
11 PF09976 TPR_21: Tetratricopep 97.4 0.0027 5.8E-08 53.4 11.6 75 275-350 43-117 (145)
12 PF12688 TPR_5: Tetratrico pep 97.4 0.0009 1.9E-08 57.2 8.3 83 258-343 18-100 (120)
13 TIGR02552 LcrH_SycD type III s 97.3 0.0018 3.8E-08 52.1 8.5 78 282-363 53-135 (135)
14 TIGR03302 OM_YfiO outer membra 97.3 0.00097 2.1E-08 58.7 7.5 73 277-350 30-103 (235)
15 PF13371 TPR_9: Tetratricopept 97.3 0.0017 3.7E-08 47.6 7.7 70 287-360 2-72 (73)
16 PRK15359 type III secretion sy 97.3 0.0031 6.7E-08 53.7 10.2 100 253-361 36-140 (144)
17 TIGR03302 OM_YfiO outer membra 97.2 0.0037 8E-08 55.1 10.8 65 283-348 169-234 (235)
18 cd00189 TPR Tetratricopeptide 97.2 0.0012 2.7E-08 45.1 6.1 57 284-344 4-60 (100)
19 cd00189 TPR Tetratricopeptide 97.1 0.0063 1.4E-07 41.6 8.7 64 281-348 35-99 (100)
20 PF12895 Apc3: Anaphase-promot 97.0 0.0017 3.6E-08 49.8 5.4 56 283-343 28-83 (84)
21 PLN03088 SGT1, suppressor of 96.9 0.0039 8.4E-08 60.9 8.4 100 246-354 7-108 (356)
22 PF12688 TPR_5: Tetratrico pep 96.9 0.0096 2.1E-07 51.0 9.5 75 282-357 3-78 (120)
23 PLN03088 SGT1, suppressor of 96.9 0.0076 1.7E-07 58.9 10.0 65 281-349 3-68 (356)
24 KOG2376 Signal recognition par 96.8 0.0037 8E-08 66.7 8.2 82 270-351 164-257 (652)
25 PRK15359 type III secretion sy 96.8 0.0053 1.1E-07 52.3 7.4 63 283-349 27-90 (144)
26 PF03704 BTAD: Bacterial trans 96.7 0.043 9.4E-07 45.6 11.9 106 251-360 23-146 (146)
27 PF12895 Apc3: Anaphase-promot 96.7 0.0039 8.4E-08 47.7 5.1 68 292-361 1-69 (84)
28 CHL00033 ycf3 photosystem I as 96.6 0.014 3.1E-07 49.8 8.7 72 277-349 32-104 (168)
29 TIGR02552 LcrH_SycD type III s 96.5 0.023 5E-07 45.6 9.0 77 270-353 10-88 (135)
30 cd05804 StaR_like StaR_like; a 96.5 0.026 5.6E-07 52.2 10.4 65 281-345 149-213 (355)
31 KOG0553 TPR repeat-containing 96.5 0.027 5.9E-07 56.0 10.9 81 275-355 76-187 (304)
32 PF13174 TPR_6: Tetratricopept 96.4 0.0037 7.9E-08 39.6 3.2 31 319-349 1-32 (33)
33 PRK15179 Vi polysaccharide bio 96.4 0.02 4.3E-07 61.6 10.6 99 252-359 131-229 (694)
34 PRK02603 photosystem I assembl 96.4 0.041 8.8E-07 47.4 10.4 73 277-350 32-105 (172)
35 PRK10803 tol-pal system protei 96.4 0.019 4.1E-07 54.8 9.1 72 281-353 143-216 (263)
36 PRK15179 Vi polysaccharide bio 96.4 0.01 2.2E-07 63.9 7.9 69 281-349 87-186 (694)
37 TIGR00990 3a0801s09 mitochondr 96.4 0.014 2.9E-07 59.9 8.5 59 283-345 163-221 (615)
38 TIGR02521 type_IV_pilW type IV 96.3 0.026 5.7E-07 46.4 8.4 84 256-348 46-129 (234)
39 PRK15363 pathogenicity island 96.3 0.013 2.7E-07 53.2 6.9 64 278-345 33-96 (157)
40 PF09976 TPR_21: Tetratricopep 96.2 0.071 1.5E-06 44.9 10.4 80 277-357 8-88 (145)
41 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.024 5.2E-07 58.9 7.8 65 281-346 76-140 (453)
42 TIGR02521 type_IV_pilW type IV 95.9 0.079 1.7E-06 43.6 9.4 61 282-346 137-197 (234)
43 TIGR02917 PEP_TPR_lipo putativ 95.9 0.068 1.5E-06 53.0 10.6 87 255-351 717-804 (899)
44 TIGR00990 3a0801s09 mitochondr 95.9 0.037 8E-07 56.8 8.8 63 283-349 402-465 (615)
45 PRK11788 tetratricopeptide rep 95.8 0.17 3.7E-06 47.4 12.1 62 286-350 220-282 (389)
46 PRK10370 formate-dependent nit 95.7 0.091 2E-06 47.5 9.8 79 257-344 55-136 (198)
47 PF14938 SNAP: Soluble NSF att 95.7 0.028 6.1E-07 52.7 6.6 80 281-360 115-199 (282)
48 PRK10866 outer membrane biogen 95.6 0.17 3.6E-06 47.4 11.1 106 255-363 46-170 (243)
49 PRK15174 Vi polysaccharide exp 95.5 0.081 1.8E-06 55.7 9.8 65 282-350 286-351 (656)
50 PRK10370 formate-dependent nit 95.4 0.13 2.9E-06 46.4 9.7 89 256-353 88-180 (198)
51 PRK12370 invasion protein regu 95.3 0.1 2.3E-06 53.5 9.7 60 286-349 344-404 (553)
52 TIGR02917 PEP_TPR_lipo putativ 95.3 0.072 1.6E-06 52.8 8.1 61 281-345 23-83 (899)
53 PRK10747 putative protoheme IX 95.3 0.056 1.2E-06 53.1 7.4 58 282-344 330-387 (398)
54 PRK11189 lipoprotein NlpI; Pro 95.3 0.14 3.1E-06 48.3 9.8 84 259-351 82-166 (296)
55 PF13429 TPR_15: Tetratricopep 95.1 0.051 1.1E-06 49.7 6.2 99 252-359 157-257 (280)
56 PRK10153 DNA-binding transcrip 94.9 0.23 5.1E-06 51.7 11.1 70 287-361 427-497 (517)
57 TIGR03504 FimV_Cterm FimV C-te 94.9 0.06 1.3E-06 39.5 4.8 41 321-361 2-42 (44)
58 CHL00033 ycf3 photosystem I as 94.9 0.2 4.4E-06 42.8 8.9 82 255-342 49-137 (168)
59 PF13429 TPR_15: Tetratricopep 94.8 0.21 4.6E-06 45.7 9.3 59 283-345 149-207 (280)
60 PRK11788 tetratricopeptide rep 94.8 0.11 2.4E-06 48.6 7.5 62 284-345 73-134 (389)
61 COG3118 Thioredoxin domain-con 94.8 0.14 3E-06 51.1 8.4 63 279-345 133-195 (304)
62 PF13525 YfiO: Outer membrane 94.7 0.21 4.6E-06 44.8 8.9 85 278-363 40-136 (203)
63 PF13428 TPR_14: Tetratricopep 94.6 0.063 1.4E-06 37.3 4.2 32 319-350 2-34 (44)
64 KOG0543 FKBP-type peptidyl-pro 94.6 0.12 2.7E-06 53.0 7.8 79 275-353 203-292 (397)
65 PRK11447 cellulose synthase su 94.5 0.29 6.2E-06 54.7 11.0 65 282-350 353-418 (1157)
66 PRK02603 photosystem I assembl 94.4 0.31 6.7E-06 42.0 9.0 84 256-345 50-147 (172)
67 PRK15331 chaperone protein Sic 94.3 0.11 2.4E-06 47.7 6.2 62 277-342 34-95 (165)
68 COG1729 Uncharacterized protei 94.3 0.36 7.9E-06 47.1 10.1 80 281-361 179-259 (262)
69 PRK11447 cellulose synthase su 94.2 0.26 5.7E-06 55.0 10.1 63 284-350 465-528 (1157)
70 KOG0547 Translocase of outer m 94.2 0.11 2.4E-06 55.2 6.6 67 277-348 112-180 (606)
71 PF07719 TPR_2: Tetratricopept 94.1 0.11 2.5E-06 32.9 4.3 31 281-311 2-32 (34)
72 PRK12370 invasion protein regu 94.0 0.44 9.5E-06 49.0 10.4 83 253-344 350-432 (553)
73 PRK09782 bacteriophage N4 rece 93.8 0.27 5.8E-06 55.2 9.1 85 255-349 590-675 (987)
74 PRK09782 bacteriophage N4 rece 93.6 0.48 1E-05 53.2 10.7 93 255-356 623-717 (987)
75 cd05804 StaR_like StaR_like; a 93.3 0.29 6.2E-06 45.4 7.1 59 283-345 117-175 (355)
76 PF14938 SNAP: Soluble NSF att 93.2 0.2 4.4E-06 47.0 6.1 88 257-344 51-141 (282)
77 COG5010 TadD Flp pilus assembl 93.0 0.45 9.7E-06 46.6 8.1 56 286-345 106-161 (257)
78 PRK10049 pgaA outer membrane p 93.0 0.46 1E-05 50.8 9.0 65 282-350 361-426 (765)
79 PRK11189 lipoprotein NlpI; Pro 92.9 0.98 2.1E-05 42.7 10.2 69 279-351 63-132 (296)
80 TIGR00540 hemY_coli hemY prote 92.8 0.38 8.3E-06 47.3 7.5 60 280-344 335-396 (409)
81 PRK15174 Vi polysaccharide exp 92.7 0.66 1.4E-05 49.1 9.5 87 256-351 227-318 (656)
82 KOG4234 TPR repeat-containing 92.4 0.64 1.4E-05 45.4 8.3 75 277-351 92-202 (271)
83 COG3063 PilF Tfp pilus assembl 92.3 0.68 1.5E-05 45.3 8.3 69 277-349 32-101 (250)
84 PF00515 TPR_1: Tetratricopept 92.2 0.31 6.7E-06 31.4 4.1 31 281-311 2-32 (34)
85 COG4105 ComL DNA uptake lipopr 92.2 0.74 1.6E-05 45.0 8.4 66 279-345 33-98 (254)
86 KOG1840 Kinesin light chain [C 91.9 0.85 1.8E-05 48.1 9.1 60 285-344 246-309 (508)
87 KOG1840 Kinesin light chain [C 91.8 1 2.2E-05 47.5 9.6 67 278-344 281-351 (508)
88 PRK10049 pgaA outer membrane p 91.8 0.88 1.9E-05 48.8 9.3 75 282-360 395-470 (765)
89 KOG0550 Molecular chaperone (D 91.0 0.52 1.1E-05 49.4 6.3 77 267-343 227-312 (486)
90 PF13174 TPR_6: Tetratricopept 90.6 0.41 8.9E-06 30.0 3.4 31 282-312 2-32 (33)
91 PF11817 Foie-gras_1: Foie gra 90.6 1.8 3.8E-05 40.5 9.0 87 255-347 159-247 (247)
92 PRK14574 hmsH outer membrane p 90.3 1.4 2.9E-05 48.9 9.2 71 287-364 109-180 (822)
93 PF13181 TPR_8: Tetratricopept 90.0 0.6 1.3E-05 29.8 3.9 31 281-311 2-32 (34)
94 PRK10747 putative protoheme IX 89.7 0.89 1.9E-05 44.8 6.5 58 286-347 159-216 (398)
95 KOG0548 Molecular co-chaperone 89.6 2.2 4.9E-05 45.6 9.7 73 271-350 352-425 (539)
96 PF10602 RPN7: 26S proteasome 89.5 2.1 4.5E-05 38.6 8.2 91 246-346 8-101 (177)
97 KOG4648 Uncharacterized conser 89.2 1.8 4E-05 45.1 8.6 95 267-361 81-210 (536)
98 KOG0543 FKBP-type peptidyl-pro 88.9 0.94 2E-05 46.8 6.2 61 281-345 292-353 (397)
99 PF12862 Apc5: Anaphase-promot 88.7 1.6 3.5E-05 35.0 6.3 57 289-345 7-68 (94)
100 COG1729 Uncharacterized protei 88.6 1.7 3.8E-05 42.5 7.6 66 283-349 144-210 (262)
101 COG4700 Uncharacterized protei 88.4 1.4 3E-05 42.8 6.6 66 279-349 88-156 (251)
102 PF03704 BTAD: Bacterial trans 88.4 4.8 0.0001 33.4 9.1 75 278-352 4-97 (146)
103 COG2956 Predicted N-acetylgluc 88.3 1.1 2.4E-05 46.0 6.2 54 283-339 217-270 (389)
104 PF13176 TPR_7: Tetratricopept 88.1 0.71 1.5E-05 31.1 3.3 24 285-308 4-27 (36)
105 PF13414 TPR_11: TPR repeat; P 87.8 1.5 3.3E-05 31.7 5.1 55 251-310 13-68 (69)
106 PF03745 DUF309: Domain of unk 87.5 1.3 2.9E-05 34.2 4.9 60 282-341 1-62 (62)
107 PRK15363 pathogenicity island 87.3 2.8 6.2E-05 38.2 7.6 77 284-364 73-154 (157)
108 PRK14574 hmsH outer membrane p 87.0 2.6 5.7E-05 46.7 8.7 94 251-353 44-139 (822)
109 TIGR00540 hemY_coli hemY prote 86.8 5.5 0.00012 39.3 10.0 66 286-354 124-191 (409)
110 PF13374 TPR_10: Tetratricopep 86.4 1.4 3.1E-05 28.6 4.0 24 285-308 7-30 (42)
111 PF13432 TPR_16: Tetratricopep 86.4 3.5 7.7E-05 29.6 6.4 55 253-312 9-63 (65)
112 KOG2076 RNA polymerase III tra 86.1 2.1 4.5E-05 48.1 7.2 66 277-345 411-476 (895)
113 PF13424 TPR_12: Tetratricopep 85.1 2.3 4.9E-05 31.6 5.0 35 276-310 42-76 (78)
114 PF12968 DUF3856: Domain of Un 84.8 4 8.6E-05 37.1 7.1 95 247-343 15-125 (144)
115 PF13176 TPR_7: Tetratricopept 84.7 1.6 3.4E-05 29.4 3.6 22 322-343 3-24 (36)
116 PRK14720 transcript cleavage f 84.3 2.6 5.7E-05 47.5 7.1 85 257-346 34-144 (906)
117 PF13428 TPR_14: Tetratricopep 84.0 1.6 3.4E-05 30.3 3.5 34 282-315 3-36 (44)
118 KOG2076 RNA polymerase III tra 83.9 1.8 3.9E-05 48.6 5.6 59 283-345 452-510 (895)
119 PF13374 TPR_10: Tetratricopep 83.9 2.1 4.6E-05 27.8 3.9 25 320-344 4-28 (42)
120 COG0457 NrfG FOG: TPR repeat [ 83.6 11 0.00025 28.4 8.2 52 290-344 177-228 (291)
121 PF07719 TPR_2: Tetratricopept 83.4 2.6 5.7E-05 26.5 4.1 31 319-349 2-33 (34)
122 PF10579 Rapsyn_N: Rapsyn N-te 82.8 4.6 0.0001 33.6 6.2 62 278-340 4-65 (80)
123 PF09613 HrpB1_HrpK: Bacterial 82.7 22 0.00048 32.7 11.2 95 255-361 27-121 (160)
124 PF07721 TPR_4: Tetratricopept 82.0 1.9 4.2E-05 27.4 3.0 24 320-343 3-26 (26)
125 smart00028 TPR Tetratricopepti 81.5 1.9 4E-05 24.3 2.6 26 284-309 5-30 (34)
126 COG4783 Putative Zn-dependent 81.3 4.8 0.0001 42.7 7.2 60 286-349 346-406 (484)
127 KOG1126 DNA-binding cell divis 81.1 6.7 0.00014 42.9 8.4 95 261-364 475-571 (638)
128 KOG1125 TPR repeat-containing 80.6 3.3 7.2E-05 44.7 5.9 68 282-349 287-385 (579)
129 PF09986 DUF2225: Uncharacteri 80.5 4.7 0.0001 37.7 6.2 73 287-359 132-210 (214)
130 PF12569 NARP1: NMDA receptor- 80.0 6.2 0.00013 41.7 7.6 63 283-349 7-70 (517)
131 TIGR00208 fliS flagellar biosy 79.6 14 0.0003 31.9 8.4 73 260-332 6-88 (124)
132 KOG1156 N-terminal acetyltrans 79.3 9.1 0.0002 42.2 8.6 85 257-349 162-251 (700)
133 PRK04841 transcriptional regul 78.9 6.6 0.00014 41.7 7.4 63 283-345 694-758 (903)
134 COG0457 NrfG FOG: TPR repeat [ 78.9 13 0.00028 28.1 7.0 58 283-344 98-156 (291)
135 KOG1155 Anaphase-promoting com 78.4 6.9 0.00015 42.0 7.3 81 256-345 379-459 (559)
136 smart00028 TPR Tetratricopepti 78.2 4.8 0.0001 22.5 3.7 26 320-345 3-28 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 77.9 7.9 0.00017 39.7 7.4 68 280-351 234-301 (395)
138 KOG3060 Uncharacterized conser 77.7 8.3 0.00018 38.6 7.2 62 287-352 59-121 (289)
139 KOG2002 TPR-containing nuclear 77.4 5.8 0.00013 45.3 6.7 66 285-350 457-529 (1018)
140 PF13181 TPR_8: Tetratricopept 77.2 5.3 0.00011 25.4 4.0 27 319-345 2-28 (34)
141 KOG3785 Uncharacterized conser 76.9 9.1 0.0002 40.4 7.5 109 230-348 12-121 (557)
142 PF04184 ST7: ST7 protein; In 76.5 6.2 0.00013 42.4 6.4 37 314-350 255-292 (539)
143 KOG0548 Molecular co-chaperone 76.3 6.5 0.00014 42.2 6.5 74 281-354 3-107 (539)
144 PF04733 Coatomer_E: Coatomer 75.9 8.8 0.00019 37.2 6.8 59 286-348 207-267 (290)
145 KOG1125 TPR repeat-containing 75.7 3.8 8.2E-05 44.3 4.6 85 252-341 475-565 (579)
146 KOG2002 TPR-containing nuclear 74.6 6.5 0.00014 44.9 6.2 53 286-340 686-738 (1018)
147 PRK15331 chaperone protein Sic 73.7 12 0.00025 34.7 6.7 73 287-365 78-153 (165)
148 COG3071 HemY Uncharacterized e 73.6 8.9 0.00019 39.9 6.5 57 283-344 331-387 (400)
149 PF14559 TPR_19: Tetratricopep 72.6 5.6 0.00012 28.5 3.6 55 256-315 6-60 (68)
150 PRK04841 transcriptional regul 71.6 36 0.00077 36.4 10.6 60 286-345 458-518 (903)
151 PF10345 Cohesin_load: Cohesin 70.2 19 0.00041 37.9 8.2 124 242-365 344-504 (608)
152 COG4105 ComL DNA uptake lipopr 70.0 47 0.001 32.8 10.2 72 278-350 165-237 (254)
153 PF08631 SPO22: Meiosis protei 69.8 27 0.00059 33.1 8.4 79 271-349 25-119 (278)
154 PF13371 TPR_9: Tetratricopept 69.6 9.7 0.00021 27.7 4.3 53 255-312 9-61 (73)
155 PF10300 DUF3808: Protein of u 69.4 10 0.00022 39.1 5.9 68 283-350 270-337 (468)
156 PF00515 TPR_1: Tetratricopept 68.5 10 0.00022 24.3 3.7 26 320-345 3-28 (34)
157 KOG4626 O-linked N-acetylgluco 68.4 9.3 0.0002 42.6 5.5 68 277-348 112-181 (966)
158 KOG4056 Translocase of outer m 68.2 14 0.0003 33.8 5.8 42 279-320 80-121 (143)
159 KOG3785 Uncharacterized conser 67.6 6.7 0.00015 41.3 4.1 60 290-352 32-93 (557)
160 TIGR02508 type_III_yscG type I 66.8 14 0.00031 32.6 5.4 73 278-360 38-110 (115)
161 KOG4626 O-linked N-acetylgluco 66.4 12 0.00025 41.9 5.8 59 282-344 356-414 (966)
162 PF13431 TPR_17: Tetratricopep 66.2 7.1 0.00015 26.3 2.8 33 303-339 2-34 (34)
163 KOG0624 dsRNA-activated protei 65.8 11 0.00025 39.5 5.3 80 277-356 35-145 (504)
164 PRK05685 fliS flagellar protei 65.5 46 0.001 28.9 8.3 72 261-332 7-92 (132)
165 PF14346 DUF4398: Domain of un 65.5 74 0.0016 26.0 9.5 37 273-309 38-74 (103)
166 PF13512 TPR_18: Tetratricopep 65.1 48 0.001 29.9 8.6 79 279-358 46-140 (142)
167 COG2976 Uncharacterized protei 64.9 25 0.00054 33.9 7.0 80 257-345 105-186 (207)
168 smart00509 TFS2N Domain in the 64.4 6.5 0.00014 31.3 2.7 26 341-366 47-72 (75)
169 COG4235 Cytochrome c biogenesi 64.0 22 0.00048 35.5 6.8 41 287-327 234-274 (287)
170 COG4235 Cytochrome c biogenesi 64.0 17 0.00038 36.2 6.1 39 283-321 159-198 (287)
171 PF02064 MAS20: MAS20 protein 63.4 12 0.00026 32.9 4.3 41 278-318 61-101 (121)
172 TIGR00985 3a0801s04tom mitocho 62.7 47 0.001 30.3 8.1 53 266-318 75-129 (148)
173 KOG2758 Translation initiation 62.6 39 0.00084 35.3 8.4 76 259-339 113-198 (432)
174 PF14561 TPR_20: Tetratricopep 62.6 19 0.00041 29.4 5.1 54 280-335 22-75 (90)
175 cd00183 TFIIS_I N-terminal dom 61.8 8 0.00017 30.6 2.7 26 341-366 49-74 (76)
176 KOG2003 TPR repeat-containing 61.7 36 0.00078 37.1 8.2 62 281-346 525-586 (840)
177 PF14561 TPR_20: Tetratricopep 61.4 37 0.00079 27.7 6.6 62 299-365 7-70 (90)
178 KOG1173 Anaphase-promoting com 61.1 47 0.001 36.4 9.0 104 246-353 205-314 (611)
179 cd02684 MIT_2 MIT: domain cont 60.9 14 0.00031 29.4 4.0 33 278-310 4-36 (75)
180 PRK04778 septation ring format 60.9 20 0.00044 37.8 6.3 57 253-314 497-553 (569)
181 COG2976 Uncharacterized protei 60.3 28 0.0006 33.6 6.5 75 276-351 85-159 (207)
182 PF09670 Cas_Cas02710: CRISPR- 60.2 56 0.0012 33.0 9.0 72 276-349 127-200 (379)
183 cd02682 MIT_AAA_Arch MIT: doma 59.7 14 0.0003 30.1 3.8 25 319-343 7-31 (75)
184 COG1516 FliS Flagellin-specifi 58.5 26 0.00057 31.5 5.6 72 260-331 6-87 (132)
185 PF10952 DUF2753: Protein of u 58.4 65 0.0014 29.5 8.1 74 285-358 6-124 (140)
186 PLN03077 Protein ECB2; Provisi 58.1 96 0.0021 33.6 10.8 58 290-349 599-656 (857)
187 PRK11619 lytic murein transgly 58.0 66 0.0014 35.0 9.6 43 304-346 332-374 (644)
188 cd02678 MIT_VPS4 MIT: domain c 56.6 20 0.00044 28.0 4.2 35 278-312 4-38 (75)
189 cd02656 MIT MIT: domain contai 56.4 22 0.00047 27.4 4.3 35 278-312 4-38 (75)
190 PF14863 Alkyl_sulf_dimr: Alky 55.3 15 0.00032 32.8 3.6 52 281-336 71-122 (141)
191 PF04184 ST7: ST7 protein; In 55.2 36 0.00077 36.9 6.9 60 283-344 262-321 (539)
192 PF02259 FAT: FAT domain; Int 54.6 59 0.0013 30.2 7.5 70 277-346 143-212 (352)
193 PF04212 MIT: MIT (microtubule 54.3 27 0.00058 26.5 4.4 29 282-310 7-35 (69)
194 PF06160 EzrA: Septation ring 54.1 25 0.00055 37.2 5.6 57 253-314 493-550 (560)
195 PRK14970 DNA polymerase III su 53.0 1.7E+02 0.0037 28.5 10.8 81 256-345 171-261 (367)
196 KOG1129 TPR repeat-containing 51.7 29 0.00063 36.4 5.5 65 285-349 228-322 (478)
197 KOG0550 Molecular chaperone (D 50.9 47 0.001 35.5 6.9 71 282-354 323-409 (486)
198 smart00745 MIT Microtubule Int 50.5 31 0.00066 26.5 4.3 35 278-312 6-40 (77)
199 PF04212 MIT: MIT (microtubule 50.4 28 0.0006 26.4 4.0 36 320-355 7-50 (69)
200 PF06957 COPI_C: Coatomer (COP 50.4 86 0.0019 32.9 8.7 43 271-313 195-237 (422)
201 KOG2183 Prolylcarboxypeptidase 49.0 6.7 0.00014 41.6 0.5 27 208-234 382-409 (492)
202 cd02683 MIT_1 MIT: domain cont 48.9 25 0.00053 28.2 3.6 36 320-355 8-51 (77)
203 PF02561 FliS: Flagellar prote 48.6 94 0.002 26.2 7.3 55 277-331 26-85 (122)
204 PF09450 DUF2019: Domain of un 48.4 30 0.00065 30.1 4.3 67 278-362 6-73 (106)
205 KOG0553 TPR repeat-containing 48.4 40 0.00086 34.2 5.7 87 243-335 83-200 (304)
206 KOG1130 Predicted G-alpha GTPa 48.3 27 0.0006 37.6 4.8 60 278-337 15-74 (639)
207 cd02679 MIT_spastin MIT: domai 48.3 21 0.00045 29.3 3.1 26 321-346 11-36 (79)
208 PF15015 NYD-SP12_N: Spermatog 46.8 49 0.0011 35.7 6.3 70 270-339 166-249 (569)
209 KOG2053 Mitochondrial inherita 46.2 95 0.0021 35.8 8.7 61 287-352 50-112 (932)
210 KOG4814 Uncharacterized conser 46.2 61 0.0013 36.5 7.1 121 221-348 301-424 (872)
211 PF15469 Sec5: Exocyst complex 46.1 1.9E+02 0.0041 25.7 9.1 85 249-348 68-152 (182)
212 KOG4340 Uncharacterized conser 45.9 28 0.00062 36.2 4.3 67 283-353 147-218 (459)
213 PF12348 CLASP_N: CLASP N term 45.4 46 0.00099 29.7 5.2 47 318-364 149-205 (228)
214 COG3629 DnrI DNA-binding trans 45.4 3.3E+02 0.0071 27.2 12.4 68 285-356 158-233 (280)
215 smart00745 MIT Microtubule Int 44.7 36 0.00077 26.2 3.8 22 322-343 12-33 (77)
216 COG2956 Predicted N-acetylgluc 44.5 1E+02 0.0022 32.3 7.9 88 268-359 93-182 (389)
217 cd02680 MIT_calpain7_2 MIT: do 44.4 33 0.00071 27.9 3.7 34 279-312 5-38 (75)
218 PF10938 YfdX: YfdX protein; 43.8 52 0.0011 29.5 5.2 70 245-314 70-151 (155)
219 KOG0547 Translocase of outer m 43.6 1.1E+02 0.0024 33.6 8.3 91 270-364 316-408 (606)
220 cd02681 MIT_calpain7_1 MIT: do 43.6 42 0.00092 27.2 4.2 31 280-310 6-36 (76)
221 KOG1126 DNA-binding cell divis 43.5 68 0.0015 35.5 6.9 109 225-342 486-615 (638)
222 PLN03098 LPA1 LOW PSII ACCUMUL 43.2 56 0.0012 34.7 6.1 86 252-344 86-171 (453)
223 KOG2047 mRNA splicing factor [ 43.2 1.4E+02 0.003 33.8 9.2 88 257-346 527-614 (835)
224 TIGR00756 PPR pentatricopeptid 41.6 41 0.00088 20.5 3.1 23 324-346 6-28 (35)
225 TIGR03362 VI_chp_7 type VI sec 41.3 67 0.0014 31.9 6.0 64 280-345 213-277 (301)
226 cd02678 MIT_VPS4 MIT: domain c 40.8 1.1E+02 0.0023 24.0 6.0 37 322-358 10-54 (75)
227 PF08711 Med26: TFIIS helical 40.8 25 0.00055 25.6 2.3 23 342-364 26-49 (53)
228 COG4649 Uncharacterized protei 40.3 1.9E+02 0.0041 28.2 8.5 104 255-362 108-213 (221)
229 smart00139 MyTH4 Domain in Myo 39.5 1.2E+02 0.0025 26.9 6.7 40 324-363 52-92 (144)
230 KOG1173 Anaphase-promoting com 39.4 25 0.00054 38.5 2.9 64 286-349 420-487 (611)
231 KOG1155 Anaphase-promoting com 38.8 1.1E+02 0.0024 33.3 7.5 77 282-360 468-547 (559)
232 cd02684 MIT_2 MIT: domain cont 38.7 1.1E+02 0.0024 24.4 5.8 37 322-358 10-54 (75)
233 PLN02789 farnesyltranstransfer 38.6 1.3E+02 0.0028 29.8 7.5 56 287-348 78-139 (320)
234 PF08631 SPO22: Meiosis protei 38.6 1.3E+02 0.0028 28.6 7.2 56 253-308 218-274 (278)
235 KOG2003 TPR repeat-containing 38.4 54 0.0012 35.9 5.2 70 286-359 496-567 (840)
236 PF10300 DUF3808: Protein of u 38.2 79 0.0017 32.8 6.2 62 283-347 308-376 (468)
237 cd02681 MIT_calpain7_1 MIT: do 38.2 49 0.0011 26.8 3.8 25 319-343 7-31 (76)
238 PF01535 PPR: PPR repeat; Int 38.0 43 0.00094 20.3 2.8 24 324-347 6-29 (31)
239 PF09797 NatB_MDM20: N-acetylt 37.9 1.7E+02 0.0036 28.8 8.2 86 256-345 150-244 (365)
240 PF10516 SHNi-TPR: SHNi-TPR; 37.5 44 0.00096 23.9 3.1 26 284-309 5-30 (38)
241 PF12968 DUF3856: Domain of Un 37.4 1.8E+02 0.0038 26.8 7.5 59 282-340 11-77 (144)
242 cd02683 MIT_1 MIT: domain cont 37.2 56 0.0012 26.2 4.0 31 280-310 6-36 (77)
243 PF13281 DUF4071: Domain of un 37.1 2.3E+02 0.005 29.4 9.2 58 294-351 155-218 (374)
244 KOG1105 Transcription elongati 36.1 92 0.002 31.5 6.1 38 328-365 39-76 (296)
245 PF05168 HEPN: HEPN domain; I 35.7 72 0.0016 24.9 4.4 86 276-362 4-107 (118)
246 COG4700 Uncharacterized protei 35.6 1.3E+02 0.0029 29.6 6.8 62 283-346 127-188 (251)
247 PRK06585 holA DNA polymerase I 35.4 3.8E+02 0.0082 25.8 10.0 97 254-359 144-258 (343)
248 PF10345 Cohesin_load: Cohesin 35.1 1.9E+02 0.0041 30.7 8.5 79 279-357 360-452 (608)
249 KOG3617 WD40 and TPR repeat-co 35.1 1.8E+02 0.0038 34.2 8.6 65 283-347 861-941 (1416)
250 PF12862 Apc5: Anaphase-promot 35.0 2.3E+02 0.005 22.6 7.2 46 282-327 43-90 (94)
251 PHA02537 M terminase endonucle 34.8 2.3E+02 0.0049 27.6 8.3 82 278-359 127-220 (230)
252 cd02682 MIT_AAA_Arch MIT: doma 34.8 71 0.0015 26.1 4.2 33 278-310 4-36 (75)
253 cd02656 MIT MIT: domain contai 34.8 1.6E+02 0.0034 22.7 6.0 36 322-357 10-53 (75)
254 TIGR02561 HrpB1_HrpK type III 34.6 2.6E+02 0.0056 25.9 8.2 74 283-360 47-120 (153)
255 PF07219 HemY_N: HemY protein 34.2 1.8E+02 0.004 24.1 6.7 34 276-309 55-88 (108)
256 KOG4076 Regulator of ATP-sensi 34.1 35 0.00076 30.5 2.6 28 274-301 46-73 (121)
257 PRK11906 transcriptional regul 34.1 88 0.0019 33.4 5.8 60 283-345 375-434 (458)
258 PF00610 DEP: Domain found in 33.6 41 0.00089 25.5 2.6 35 313-347 16-51 (74)
259 KOG0686 COP9 signalosome, subu 32.7 1.7E+02 0.0038 31.3 7.6 67 250-326 126-193 (466)
260 PF09477 Type_III_YscG: Bacter 32.5 1.5E+02 0.0033 26.5 6.1 65 286-359 46-110 (116)
261 PRK06645 DNA polymerase III su 32.3 4.9E+02 0.011 27.8 11.0 99 257-364 192-306 (507)
262 smart00748 HEPN Higher Eukaryt 32.2 63 0.0014 26.3 3.6 31 278-308 2-32 (113)
263 smart00049 DEP Domain found in 32.2 41 0.00088 25.7 2.4 36 311-347 17-52 (77)
264 KOG0624 dsRNA-activated protei 32.2 2.2E+02 0.0048 30.4 8.3 28 283-310 109-136 (504)
265 PRK14963 DNA polymerase III su 32.2 4.6E+02 0.01 27.8 10.7 94 255-360 178-286 (504)
266 COG4783 Putative Zn-dependent 31.4 1.5E+02 0.0032 32.1 6.9 94 251-350 275-373 (484)
267 TIGR02397 dnaX_nterm DNA polym 31.3 4.6E+02 0.01 24.9 11.4 83 255-346 179-271 (355)
268 PLN03081 pentatricopeptide (PP 30.8 2.8E+02 0.0062 29.4 9.0 59 290-350 436-494 (697)
269 PRK10316 hypothetical protein; 30.1 2E+02 0.0043 28.0 7.0 49 266-314 151-203 (209)
270 cd02677 MIT_SNX15 MIT: domain 29.8 82 0.0018 25.3 3.8 29 281-309 7-35 (75)
271 PF07240 Turandot: Stress-indu 29.2 73 0.0016 26.9 3.5 35 328-362 6-42 (85)
272 PF12487 DUF3703: Protein of u 29.0 4E+02 0.0087 23.5 8.6 48 275-322 4-51 (112)
273 PF10475 DUF2450: Protein of u 28.7 5.4E+02 0.012 24.9 10.8 102 257-361 101-237 (291)
274 KOG0917 Uncharacterized conser 28.6 75 0.0016 32.4 4.1 41 274-314 297-337 (338)
275 KOG0564 5,10-methylenetetrahyd 28.5 25 0.00053 38.2 0.8 64 138-225 453-518 (590)
276 COG5010 TadD Flp pilus assembl 28.4 2.3E+02 0.0049 28.3 7.3 63 283-349 137-199 (257)
277 TIGR03504 FimV_Cterm FimV C-te 28.4 74 0.0016 23.4 3.1 26 283-308 2-27 (44)
278 PF04097 Nic96: Nup93/Nic96; 28.1 3.1E+02 0.0068 29.6 8.8 100 258-360 479-602 (613)
279 PF04652 DUF605: Vta1 like; I 27.7 43 0.00092 32.9 2.2 43 268-310 337-379 (380)
280 KOG2709 Uncharacterized conser 27.7 47 0.001 35.7 2.6 30 318-347 22-51 (560)
281 PRK01631 hypothetical protein; 27.7 1.4E+02 0.0031 24.8 4.9 40 246-285 21-73 (76)
282 PF14853 Fis1_TPR_C: Fis1 C-te 27.6 2.3E+02 0.005 21.4 5.7 40 321-363 4-44 (53)
283 cd04444 DEP_PLEK2 DEP (Disheve 27.5 86 0.0019 27.5 3.8 46 312-358 29-78 (109)
284 PF10228 DUF2228: Uncharacteri 27.1 97 0.0021 30.4 4.5 78 255-335 171-249 (253)
285 cd03311 CIMS_C_terminal_like C 26.8 47 0.001 32.0 2.3 54 217-275 3-56 (332)
286 KOG1070 rRNA processing protei 26.7 3.8E+02 0.0083 33.0 9.7 101 258-362 1494-1612(1710)
287 PLN03218 maturation of RBCL 1; 26.3 1.7E+02 0.0036 34.0 6.8 52 291-345 660-711 (1060)
288 PF00244 14-3-3: 14-3-3 protei 26.0 1.7E+02 0.0036 27.8 5.8 48 297-344 143-195 (236)
289 PF11817 Foie-gras_1: Foie gra 25.8 1.5E+02 0.0032 27.9 5.3 48 298-345 156-205 (247)
290 PF13646 HEAT_2: HEAT repeats; 25.6 2.8E+02 0.0061 20.6 5.9 54 297-357 30-84 (88)
291 PF08969 USP8_dimer: USP8 dime 25.5 1E+02 0.0022 25.7 3.9 34 277-310 35-68 (115)
292 KOG1156 N-terminal acetyltrans 25.3 94 0.002 34.8 4.4 58 283-344 10-67 (700)
293 PF13041 PPR_2: PPR repeat fam 25.0 90 0.002 21.7 2.9 23 325-347 10-32 (50)
294 KOG2376 Signal recognition par 25.0 3.6E+02 0.0078 30.2 8.6 63 285-354 84-146 (652)
295 PF12569 NARP1: NMDA receptor- 24.5 8E+02 0.017 26.4 10.9 89 253-346 158-256 (517)
296 PF12854 PPR_1: PPR repeat 24.2 90 0.0019 20.9 2.7 21 324-344 13-33 (34)
297 PF02184 HAT: HAT (Half-A-TPR) 24.2 71 0.0015 22.6 2.2 19 334-352 3-22 (32)
298 PRK06305 DNA polymerase III su 23.9 6.1E+02 0.013 26.4 9.8 79 256-345 184-274 (451)
299 PRK05563 DNA polymerase III su 23.4 5.1E+02 0.011 27.7 9.3 79 257-346 183-273 (559)
300 PLN03077 Protein ECB2; Provisi 23.3 3.8E+02 0.0083 29.2 8.5 73 260-345 309-381 (857)
301 KOG1464 COP9 signalosome, subu 23.3 1.7E+02 0.0036 30.5 5.4 52 294-345 41-92 (440)
302 PF05235 CHAD: CHAD domain; I 23.2 2E+02 0.0042 26.0 5.5 79 282-366 102-192 (231)
303 PF08311 Mad3_BUB1_I: Mad3/BUB 23.2 93 0.002 26.7 3.2 25 319-343 100-124 (126)
304 TIGR02710 CRISPR-associated pr 22.5 2.6E+02 0.0057 29.1 6.8 62 281-343 131-196 (380)
305 PRK09111 DNA polymerase III su 22.2 5.8E+02 0.013 27.8 9.5 96 256-362 195-305 (598)
306 KOG3824 Huntingtin interacting 21.9 2.7E+02 0.0059 29.4 6.7 69 271-343 107-175 (472)
307 COG3387 SGA1 Glucoamylase and 21.9 72 0.0016 34.6 2.8 38 318-355 537-576 (612)
308 KOG0545 Aryl-hydrocarbon recep 21.7 3.8E+02 0.0082 27.5 7.4 81 268-349 167-262 (329)
309 COG1466 HolA DNA polymerase II 21.7 6.7E+02 0.015 24.6 9.2 95 254-360 142-253 (334)
310 TIGR01385 TFSII transcription 21.3 74 0.0016 31.7 2.6 23 342-364 50-72 (299)
311 KOG4555 TPR repeat-containing 21.3 6E+02 0.013 24.0 8.1 85 271-360 34-119 (175)
312 COG3063 PilF Tfp pilus assembl 21.2 2.3E+02 0.0049 28.3 5.7 86 256-345 70-166 (250)
313 PRK00440 rfc replication facto 21.2 6.7E+02 0.014 23.2 11.0 78 256-345 165-254 (319)
314 COG3404 Methenyl tetrahydrofol 20.9 2.5E+02 0.0054 27.3 5.8 47 245-296 96-142 (208)
315 PRK14971 DNA polymerase III su 20.8 6.5E+02 0.014 27.4 9.6 82 256-346 184-275 (614)
316 PLN02540 methylenetetrahydrofo 20.6 44 0.00096 36.2 0.9 15 211-225 492-506 (565)
317 PRK06647 DNA polymerase III su 20.6 1.1E+03 0.024 25.5 11.4 79 257-345 183-272 (563)
318 PRK14959 DNA polymerase III su 20.6 7.3E+02 0.016 27.5 9.9 79 257-345 183-272 (624)
319 PRK09121 5-methyltetrahydropte 20.4 71 0.0015 31.8 2.2 53 217-274 6-58 (339)
320 KOG1586 Protein required for f 20.4 2.4E+02 0.0052 28.6 5.8 68 277-344 70-140 (288)
321 cd00115 LMWPc Substituted upda 20.4 1.3E+02 0.0027 25.5 3.4 24 212-235 98-121 (141)
322 PRK14950 DNA polymerase III su 20.3 6.1E+02 0.013 27.2 9.1 76 256-346 183-274 (585)
323 PF10373 EST1_DNA_bind: Est1 D 20.2 4.3E+02 0.0094 23.9 7.1 57 299-359 1-59 (278)
No 1
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.23 E-value=5e-06 Score=60.35 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
|..|..+|..|+|.+|+..|+.++..-+. ..++.++|+.||...|+.++|+.+|+++. ..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 67899999999999999999999988755 78999999999999999999999999984 5664
No 2
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.10 E-value=1.3e-05 Score=58.16 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=52.8
Q ss_pred HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHH
Q 017641 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSK 354 (368)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrK 354 (368)
||+.|+|.+|+.+|+++++.-|. ..++.+.|+.||-..|+.++|+.+++++. .+|+ +.+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999877 46788899999999999999999999996 7888 55443
No 3
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=8.3e-05 Score=57.20 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 358 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 358 (368)
.+..+..|..++..|+|.+|+.+|+.++..-+... .-..+.+.++.||...|+.++|+.+|+++. .+|+..+..+|.+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 45578899999999999999999999998766443 334667888999999999999999999985 7999888888843
No 4
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.94 E-value=5.9e-05 Score=67.38 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSK 354 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK 354 (368)
..+..|+.|..+|+.|+|.+|+..|+++.+.-+. |.+...+++|++.||-..|+.++|+..|+++. .||+..-..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 3567999999999999999999999999988555 88999999999999999999999999999974 788865433
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=9.7e-05 Score=56.81 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..|..++..|+|.+|+.+|++++..-+ .+...-.+.++++.||...|+.++|+.+|+++. .+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 35679999999999999999999999987754 344557889999999999999999999999986 4666
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.77 E-value=8.5e-05 Score=54.15 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-RPKEARIMYEKLQ 345 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-R~~EAiaLYkkL~ 345 (368)
++..+..|..+|..|+|.+|+.+|++|++.-+.+ ..+.++++.||...| +.++|+..|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~----~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN----AEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4567889999999999999999999999986554 568999999999999 7999999999864
No 7
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.71 E-value=0.00031 Score=66.73 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (368)
Q Consensus 274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (368)
|.-.......|..|..++..|+|.+|+.+|+++++.-+ .+..-.++-+.++.||...|+.++|+.+|+++. .||+..-
T Consensus 174 P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 174 PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 44333344579999999999999999999999998876 567778899999999999999999999999996 7999999
Q ss_pred HHHHHHHhh
Q 017641 353 SKRARQFMF 361 (368)
Q Consensus 353 rKQAkrLly 361 (368)
.++|++.|-
T Consensus 253 a~~A~~rL~ 261 (263)
T PRK10803 253 AKQAQKRLN 261 (263)
T ss_pred HHHHHHHHh
Confidence 999988763
No 8
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.66 E-value=0.00021 Score=63.54 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.++.|+.|+.+|+.|+|.+|+..||.+.+.-|+ ++..-.++|||+-||=..++.++|++-|+++. -||.-
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 346899999999999999999999999998887 67888999999999999999999999999996 47653
No 9
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.55 E-value=0.00034 Score=52.28 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
+......|..++..|+|.+|+.+|++|++....-..-+ +.+-..+++||...|++++|+.+|++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456789999999999999999999998742222222 566677999999999999999999985
No 10
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.45 E-value=0.00054 Score=63.86 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
..++.|..|..+|+.|+|.+|+..|+++++.-+ .|.+.-.+.+||+.||=..++.++|+..|++.. .||+-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 445689999999999999999999999998666 558888999999999999999999999999995 566543
No 11
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.43 E-value=0.0027 Score=53.41 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 017641 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350 (368)
Q Consensus 275 ~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~ 350 (368)
..--.....|..++.+|+.|+|.+|+..|+.+++.. ....+.-.+.+.||.||-..|+.++|+.+++++..++..
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~ 117 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFK 117 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchH
Confidence 333445668889999999999999999999999977 556888999999999999999999999999886555543
No 12
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.0009 Score=57.23 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (368)
.+.+.-|++-.-..++.... .+..+..|..+..-|+|.+|+..|++++...+. ..+.+.++..+|+|+-+.||++||
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~~~--~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGADR--RRALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHH
Confidence 44555555555444443322 234555666666666666666666666554322 234555556666666666666666
Q ss_pred HHHHHH
Q 017641 338 RIMYEK 343 (368)
Q Consensus 338 iaLYkk 343 (368)
+.+.=.
T Consensus 95 l~~~l~ 100 (120)
T PF12688_consen 95 LEWLLE 100 (120)
T ss_pred HHHHHH
Confidence 666544
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.29 E-value=0.0018 Score=52.07 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH----HHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV----SKRA 356 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV----rKQA 356 (368)
..+..|..++..|+|.+|+..|+.++..-+. ...+...+++||...|+.++|+..|++.. .+|+... .+++
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3556799999999999999999999887544 36677889999999999999999999985 5776554 7778
Q ss_pred HHHhhhh
Q 017641 357 RQFMFSF 363 (368)
Q Consensus 357 krLlyiL 363 (368)
..+++.|
T Consensus 129 ~~~~~~~ 135 (135)
T TIGR02552 129 EAMLESL 135 (135)
T ss_pred HHHHhcC
Confidence 8777764
No 14
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.28 E-value=0.00097 Score=58.73 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
...++..|..|..++..|+|.+|+..|+.++..-+ .+...-.+.+.++.||.+.|+.++|+..|+++. .||+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 44556789999999999999999999999988665 344566788999999999999999999999995 57743
No 15
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.0017 Score=47.60 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=59.3
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHh
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM 360 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl 360 (368)
...++.+++|..|+..++.++..-|.. -.+.+.+++||-..|+.++|+..|++.. .+|+.....+++++|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 356899999999999999999997763 3344558999999999999999999985 799988888887765
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.27 E-value=0.0031 Score=53.74 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
...+..+.+..|+.- +.++|... +..+..|..++..|+|.+|+..|+.|+.+-+. ...+.+.|+.||...|
T Consensus 36 ~~g~~~~A~~~~~~a--l~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 36 QEGDYSRAVIDFSWL--VMAQPWSW---RAHIALAGTWMMLKEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HcCCHHHHHHHHHHH--HHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcC
Confidence 344455566666654 35556543 33577899999999999999999999987553 4678888999999999
Q ss_pred ChHHHHHHHHHHh-cCCCH----HHHHHHHHHhh
Q 017641 333 RPKEARIMYEKLQ-SHPNA----LVSKRARQFMF 361 (368)
Q Consensus 333 R~~EAiaLYkkL~-sHP~~----eVrKQAkrLly 361 (368)
|.++|+..|++.. ..|+- .++.++..++=
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999975 45554 67777776653
No 17
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.24 E-value=0.0037 Score=55.09 Aligned_cols=65 Identities=15% Similarity=0.024 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
.+..|..++.+|+|.+|+..|+.+++..+. +...-++.+.++.+|..+|+.++|+.++++|. +||
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 357788999999999999999999988765 35557889999999999999999999999996 677
No 18
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.23 E-value=0.0012 Score=45.07 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
+..|..++..|+|.+|+.+|+.++...+... .+.++++.||-..++.++|+.+|+++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443322 44555555555555555555555554
No 19
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.11 E-value=0.0063 Score=41.56 Aligned_cols=64 Identities=25% Similarity=0.211 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
...+..|..++..|++.+|+.+|+.++...+... .+...++.+|...|+.++|+.+++++. .+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 4467789999999999999999999998766544 777889999999999999999999985 455
No 20
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.99 E-value=0.0017 Score=49.77 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
.|..|..+|..|+|.+|++.|++ ..+... .-.+.+.+|.||-.+|+.+|||..+++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~--~~~~~~---~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK--LKLDPS---NPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC--HTHHHC---HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH--hCCCCC---CHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34445556666666666555555 111111 134444455566666666666555543
No 21
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.89 E-value=0.0039 Score=60.90 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHH
Q 017641 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS 325 (368)
Q Consensus 246 teEEkaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLA 325 (368)
..-..+-+..+..+.+..|++-+ .++|... ...+..|..++..|+|.+|+..|++|+.+-+. ...+.+.++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al--~~~P~~~---~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg 77 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI--DLDPNNA---ELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKG 77 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHH
Confidence 33455667778888999998655 5566543 34678899999999999999999999998664 467889999
Q ss_pred HHHHhcCChHHHHHHHHHHh-cCCC-HHHHH
Q 017641 326 ICQDSLHRPKEARIMYEKLQ-SHPN-ALVSK 354 (368)
Q Consensus 326 iAydA~GR~~EAiaLYkkL~-sHP~-~eVrK 354 (368)
.||..+|+.++|+..|+++. .+|+ ..+..
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999985 5665 44433
No 22
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.86 E-value=0.0096 Score=50.99 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 357 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 357 (368)
-.|+.+..+...|+..+|+++|+.|+.. .......-.+.|+|+.+|..+||.++|+++-++.. .||..+.....+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 4688899999999999999999999985 44455556799999999999999999999999996 689977766555
No 23
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.85 E-value=0.0076 Score=58.87 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+.+..|..+|..|+|.+|+++|++|+.+-+.. ..+.+.++.||..+|+.++|+..|+++. ..|+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 457788999999999999999999999987765 3567889999999999999999999996 4553
No 24
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0037 Score=66.70 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=64.6
Q ss_pred CcCChhh-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-----------HHHHHHHHHHHHhcCChHHH
Q 017641 270 LNVDPKL-KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 270 l~Vd~~~-~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EA 337 (368)
+..-|++ ..--+..|..+-.+.++|+|.+|++.||+|+..|-..-..+ --+.+|||-+|+-+|+++||
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3444554 33667899999999999999999999999977665444433 35678999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 017641 338 RIMYEKLQSHPNAL 351 (368)
Q Consensus 338 iaLYkkL~sHP~~e 351 (368)
.++|..+.+|-..+
T Consensus 244 ~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 244 SSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999998654433
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.78 E-value=0.0053 Score=52.32 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..++..|+|.+|+.+|..++..=+.. ..+.+.++.|+...|+.++|+..|++.. -.|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567999999999999999999998876654 5677889999999999999999999985 4553
No 26
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.043 Score=45.57 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCh-h----hHHHHHHH-----HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHH
Q 017641 251 AAKEERTRQLLAAYKKSVGLNVDP-K----LKSECEKA-----LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 320 (368)
Q Consensus 251 aar~~rtke~LaaYrk~~Gl~Vd~-~----~~~e~eea-----~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea 320 (368)
..+....++.|+-|+...=-+++. . ....+++. .+.+..+.+.|+|.+|+..++.++..=|.+- .+
T Consensus 23 ~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E----~~ 98 (146)
T PF03704_consen 23 EEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE----EA 98 (146)
T ss_dssp HHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H----HH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH----HH
Confidence 445567788888898776555554 1 12233322 2336678889999999999999999987754 56
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh--------cCCCHHHHHHHHHHh
Q 017641 321 ALQWSICQDSLHRPKEARIMYEKLQ--------SHPNALVSKRARQFM 360 (368)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~--------sHP~~eVrKQAkrLl 360 (368)
..+|..||-+.||+.+|+..|++++ ..|+++++.-.++||
T Consensus 99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~il 146 (146)
T PF03704_consen 99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREIL 146 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHhC
Confidence 6778899999999999999999884 369999888777765
No 27
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.65 E-value=0.0039 Score=47.73 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=52.3
Q ss_pred hcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCHHHHHHHHHHhh
Q 017641 292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNALVSKRARQFMF 361 (368)
Q Consensus 292 erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~eVrKQAkrLly 361 (368)
+.|+|..|+.+||++++..+.++ -..+.+++|.||=..|+.++|+.+++++.. +.+..++-...+.++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999754 556777789999999999999999999653 334455544444444
No 28
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.59 E-value=0.014 Score=49.75 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
...+...+..|..++..|+|.+|+.+|++|+...+. +..-..+...++++|...|++++|+.+|++.. .+|.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 346667788999999999999999999999987542 32234577789999999999999999999975 4554
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.52 E-value=0.023 Score=45.63 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=61.7
Q ss_pred CcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 270 l~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
+.++|... ...+..|..++..|+|.+|+..|+++.+.-+.. ..+...++.||-..|++++|+.+|+++. .+|
T Consensus 10 l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 10 LGLDSEQL---EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HcCChhhH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566643 347889999999999999999999998876553 4677789999999999999999999995 566
Q ss_pred C-HHHH
Q 017641 349 N-ALVS 353 (368)
Q Consensus 349 ~-~eVr 353 (368)
. ..+.
T Consensus 83 ~~~~~~ 88 (135)
T TIGR02552 83 DDPRPY 88 (135)
T ss_pred CChHHH
Confidence 4 3443
No 30
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.50 E-value=0.026 Score=52.25 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
......|..+++.|++.+|+.+|++++...+....+.....+.++.+|-..|+.++|+.+|+++.
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 33566799999999999999999999998876656666667779999999999999999999974
No 31
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.027 Score=55.96 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc-----------cch-------------------HHHHHHH
Q 017641 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----------ELH-------------------GLAALQW 324 (368)
Q Consensus 275 ~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----------~LG-------------------GeaqLwL 324 (368)
+.++.+++.=.+|..+|+.++|++||..|.+|+.+.|.+- +|| -++-.-|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4778888888889999999999999999999999887664 444 2344457
Q ss_pred HHHHHhcCChHHHHHHHHHH-hcCCCHHHHHH
Q 017641 325 SICQDSLHRPKEARIMYEKL-QSHPNALVSKR 355 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQ 355 (368)
-+||=+.|++++|+.-|++- .--|+-++=|.
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence 78899999999999999885 57888776554
No 32
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.45 E-value=0.0037 Score=39.56 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
++.++++.||...|+.++|+.+|++|. .||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 478899999999999999999999996 7886
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.44 E-value=0.02 Score=61.65 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
.|..+..+.|..++.-. ..+|... ...+..|..+.+-|+|.+|++.|++++..-+ ---.+.++|+.+|.-.
T Consensus 131 ~~~~~~eeA~~~~~~~l--~~~p~~~---~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 131 KRQQGIEAGRAEIELYF--SGGSSSA---REILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTRR 201 (694)
T ss_pred HHhccHHHHHHHHHHHh--hcCCCCH---HHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHc
Confidence 34455556666665333 3334332 2366678888888888888888888887222 1236778888888888
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 017641 332 HRPKEARIMYEKLQSHPNALVSKRARQF 359 (368)
Q Consensus 332 GR~~EAiaLYkkL~sHP~~eVrKQAkrL 359 (368)
|+.++|.+.|++...+-...++|-++.|
T Consensus 202 G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 202 GALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred CCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8888888888888765556666656554
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.40 E-value=0.041 Score=47.43 Aligned_cols=73 Identities=21% Similarity=0.155 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
...+...+..|..++..|+|.+|+.+|++|++.-+-.. --+.+...++.||...|+.++|+.+|++.. .||+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 34555678999999999999999999999987644322 135688889999999999999999999885 57754
No 35
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.40 E-value=0.019 Score=54.78 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=61.7
Q ss_pred HHHHHHHHHH-HhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 017641 281 EKALKDGDSL-MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS 353 (368)
Q Consensus 281 eea~~~Gk~A-merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr 353 (368)
...|..+..+ +..|+|.+|+..|++.+..-|. |.+-..+.+||+.+|-..|+.++|+..|+++. .||.-.-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 4568888876 7789999999999999988864 66778999999999999999999999999996 68874333
No 36
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.37 E-value=0.01 Score=63.87 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------------------------HHHHHHHHHHHHh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQDS 330 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAydA 330 (368)
+..+-.|..++.+|.|.+|..+|+.++++.|-+.... ..+++.+|+|++.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 3445557777777777777777777777666554322 6788999999999
Q ss_pred cCChHHHHHHHHHHh-cCCC
Q 017641 331 LHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 331 ~GR~~EAiaLYkkL~-sHP~ 349 (368)
+|+++||+++|+++. -||+
T Consensus 167 ~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 167 IGQSEQADACFERLSRQHPE 186 (694)
T ss_pred hcchHHHHHHHHHHHhcCCC
Confidence 999999999999997 6776
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.37 E-value=0.014 Score=59.91 Aligned_cols=59 Identities=8% Similarity=-0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-+..|..++..|+|.+|++.|++|+++-+.. -.+...++.||..+|+.++|+.-|.++.
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444556666666666666666666554332 2445556666666666666666665553
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.32 E-value=0.026 Score=46.42 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
+..+.+..|.+-. ..+|.. ....+..|..++..|++.+|+.+|++++...+.. +.+...++.+|-..|+.+
T Consensus 46 ~~~~A~~~~~~~l--~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 46 DLEVAKENLDKAL--EHDPDD---YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----GDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred CHHHHHHHHHHHH--HhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcccHH
Confidence 4445555554432 223321 3445667889999999999999999998875543 467788899999999999
Q ss_pred HHHHHHHHHhcCC
Q 017641 336 EARIMYEKLQSHP 348 (368)
Q Consensus 336 EAiaLYkkL~sHP 348 (368)
+|+.+|++...++
T Consensus 117 ~A~~~~~~~~~~~ 129 (234)
T TIGR02521 117 QAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987543
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.28 E-value=0.013 Score=53.19 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+.-+..|..|-.+|+.|+|.+|..+|+..+..=+-+.+ --+-|++|+++.|++++||..|.+..
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455899999999999999999999998776655543 35678999999999999999998864
No 40
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.18 E-value=0.071 Score=44.86 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR 355 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ 355 (368)
..++...|.....++..|.+..+-..++..+.. ..+|.....+.|.+|.++-..|+.++|+.+|+++. .+|++.++..
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 456778899999999999999998888887775 66678999999999999999999999999999996 5688888877
Q ss_pred HH
Q 017641 356 AR 357 (368)
Q Consensus 356 Ak 357 (368)
|+
T Consensus 87 a~ 88 (145)
T PF09976_consen 87 AR 88 (145)
T ss_pred HH
Confidence 74
No 41
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.94 E-value=0.024 Score=58.86 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
+..+..|..++..|+|.+|+..|++|+++-+-.-. .-.+..+++.||-.+|+.++|++.|++-..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34788899999999999999999999999765311 113478999999999999999999998754
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.93 E-value=0.079 Score=43.62 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
..+..|..++..|++.+|+.+|++++...+.. ..+.+.++.+|...|+.++|+.++++...
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667999999999999999999999876543 45778899999999999999999999864
No 43
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.93 E-value=0.068 Score=53.00 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-..+.-++ ...+..+..+...|++.+|+..|+++++..+.. -.+...++.+|...|+.
T Consensus 717 g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDY 786 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCH
Confidence 34455555565544333332 234556778888888888888888888876654 36778889999999999
Q ss_pred HHHHHHHHHHh-cCCCHH
Q 017641 335 KEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP~~e 351 (368)
++|+.+|+++. .+|+..
T Consensus 787 ~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 99999999985 677643
No 44
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.87 E-value=0.037 Score=56.79 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..++..|+|.+|+..|++|+++-+.+ ..+.++|+.+|...|+.++|+.+|++.. .+|+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4556888888888888888888888776543 3456678888888888888888888764 5665
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.78 E-value=0.17 Score=47.37 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=28.6
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.|..++..|++.+|+.+|+++++.-+.. -..+...++.+|...|+.++|+.+++++. .+|+.
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEY---LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3445555555555555555554432211 12233344455555555555555555543 34443
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.72 E-value=0.091 Score=47.46 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHH-HhcCC--
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ-DSLHR-- 333 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy-dA~GR-- 333 (368)
..+.+..|+..+ ..+|...+ .-+..|..++..|+|.+|+..|++|+.+-+.+ ..+.+.+|+|+ ...|+
T Consensus 55 ~~~~i~~l~~~L--~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~----~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 55 PEAQLQALQDKI--RANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGEN----AELYAALATVLYYQAGQHM 125 (198)
T ss_pred HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCC
Confidence 345555665444 33344333 24555777777777777777777777766654 23334445542 44444
Q ss_pred hHHHHHHHHHH
Q 017641 334 PKEARIMYEKL 344 (368)
Q Consensus 334 ~~EAiaLYkkL 344 (368)
.++|+.++++.
T Consensus 126 ~~~A~~~l~~a 136 (198)
T PRK10370 126 TPQTREMIDKA 136 (198)
T ss_pred cHHHHHHHHHH
Confidence 25555555555
No 47
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.69 E-value=0.028 Score=52.67 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhc-CchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc-C-CCHHHHHH
Q 017641 281 EKALKDGDSLMDS-GKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-H-PNALVSKR 355 (368)
Q Consensus 281 eea~~~Gk~Amer-GkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-H-P~~eVrKQ 355 (368)
+.....|..+.+. |+|..|+++|++|++.... .+.....+.+++|.+|-.+|+.++|+.+|+++.. + -+...+=.
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3344557777777 8999999999999988553 4466688889999999999999999999999963 2 23333445
Q ss_pred HHHHh
Q 017641 356 ARQFM 360 (368)
Q Consensus 356 AkrLl 360 (368)
+++++
T Consensus 195 ~~~~~ 199 (282)
T PF14938_consen 195 AKEYF 199 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 48
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.55 E-value=0.17 Score=47.45 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC-
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR- 333 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR- 333 (368)
.+..+.+..|++=. +..|......+..|..|..+|..|+|.+|+.+|+.++..-|.+... ..|...+++|+..+++
T Consensus 46 g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 46 GNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDS 122 (243)
T ss_pred CCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchh
Confidence 34444555554433 3445554555568899999999999999999999999988887666 7888899999766652
Q ss_pred -----------------hHHHHHHHHHHh-cCCCHHHHHHHHHHhhhh
Q 017641 334 -----------------PKEARIMYEKLQ-SHPNALVSKRARQFMFSF 363 (368)
Q Consensus 334 -----------------~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiL 363 (368)
..+|+..+++|. .||+-+-...|++.|--+
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 368999999996 899999999998765443
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.49 E-value=0.081 Score=55.75 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..+..|..++..|++.+|+.+|+.|+++-+. ...+..+|+.+|...|+.++|++.|+++. .||+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3456699999999999999999999987544 35678889999999999999999999985 67764
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.42 E-value=0.13 Score=46.38 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHH-HhcCc--hhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSL-MDSGK--LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~A-merGk--Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
+..+.+..|++-. .++|..... .+..|..+ +..|+ +.+|...|++|+..-+.+. .+.+.|+++|...|
T Consensus 88 ~~~~A~~a~~~Al--~l~P~~~~~---~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~----~al~~LA~~~~~~g 158 (198)
T PRK10370 88 DYDNALLAYRQAL--QLRGENAEL---YAALATVLYYQAGQHMTPQTREMIDKALALDANEV----TALMLLASDAFMQA 158 (198)
T ss_pred CHHHHHHHHHHHH--HhCCCCHHH---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHcC
Confidence 4445556665444 344443222 45567765 56677 6999999999999988765 58899999999999
Q ss_pred ChHHHHHHHHHHh-cCCCHHHH
Q 017641 333 RPKEARIMYEKLQ-SHPNALVS 353 (368)
Q Consensus 333 R~~EAiaLYkkL~-sHP~~eVr 353 (368)
+.++|++.|+++. ..|-..-|
T Consensus 159 ~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 159 DYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred CHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999974 45544333
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=95.32 E-value=0.1 Score=53.48 Aligned_cols=60 Identities=7% Similarity=-0.137 Sum_probs=41.6
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.|..++..|++.+|+.+|++|+++-|... .+..+++.+|-..||.++|+..|++.. -+|.
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 46667777778888888887777765543 345667777777777777777777764 4554
No 52
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.28 E-value=0.072 Score=52.83 Aligned_cols=61 Identities=16% Similarity=0.065 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
...+..|+.++..|+|.+|+..|++++..-+. ..++...++.+|...|+.++|+..|+++.
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34667777777777777777777777764333 44667777777777777777777777775
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.28 E-value=0.056 Score=53.06 Aligned_cols=58 Identities=22% Similarity=0.184 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
-.+..|+.++..|++.+|..+||+++..-|. -.+.++|+.+|++.|++++|..+|++=
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3667899999999999999999999987543 355689999999999999999999964
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.26 E-value=0.14 Score=48.29 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=62.2
Q ss_pred HHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHH
Q 017641 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 338 (368)
Q Consensus 259 e~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi 338 (368)
+.+..|.+-. .++|..- ..-+..|..++..|+|.+|+..|++|+++-|.. ..+.+.+++||-..||.++|+
T Consensus 82 ~A~~~~~~Al--~l~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 82 LARNDFSQAL--ALRPDMA---DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHHH--HcCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence 3344454333 3445432 335677999999999999999999999876553 457788999999999999999
Q ss_pred HHHHHHh-cCCCHH
Q 017641 339 IMYEKLQ-SHPNAL 351 (368)
Q Consensus 339 aLYkkL~-sHP~~e 351 (368)
..|++.. .+|+.-
T Consensus 153 ~~~~~al~~~P~~~ 166 (296)
T PRK11189 153 DDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCH
Confidence 9998874 677654
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.13 E-value=0.051 Score=49.73 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
.+.-+..+.+..|++-+ .++|..... ....+..+.+.|++.++.+.++......+.+..+. ..++.||..+
T Consensus 157 ~~~G~~~~A~~~~~~al--~~~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~----~~la~~~~~l 227 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKAL--ELDPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW----DALAAAYLQL 227 (280)
T ss_dssp HHCCHHHHHHHHHHHHH--HH-TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC----HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HcCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH----HHHHHHhccc
Confidence 34446667777787544 666664443 33457788999999998888888777776666643 4578999999
Q ss_pred CChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 017641 332 HRPKEARIMYEKLQ-SHP-NALVSKRARQF 359 (368)
Q Consensus 332 GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL 359 (368)
|+.++|+.+|+++. .|| ++.+...=..+
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc
Confidence 99999999999986 477 56665443333
No 56
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.94 E-value=0.23 Score=51.73 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=58.9
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF 361 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly 361 (368)
|-.++-+|++.+|..+|++|+++-+ + -++-+.++.+|+..||.++|++.|++- .-.|...+.-..++|.|
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f 497 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF 497 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence 5556678999999999999999885 3 367888999999999999999999875 46888777777777765
No 57
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.91 E-value=0.06 Score=39.46 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 017641 321 ALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF 361 (368)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (368)
.|.||-+|-.+|+.+.|+.+-+.+..+.+...+.+|+.||=
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999984
No 58
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.91 E-value=0.2 Score=42.77 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHH-----
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD----- 329 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd----- 329 (368)
.+..+.+..|++-+.+..++. ......+..|..++..|++.+|+.+|++|+..-+.. +.....++.+|-
T Consensus 49 g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQ 122 (168)
T ss_pred CCHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHH
Confidence 345567777877766654443 223356778999999999999999999999874433 455667777777
Q ss_pred --hcCChHHHHHHHH
Q 017641 330 --SLHRPKEARIMYE 342 (368)
Q Consensus 330 --A~GR~~EAiaLYk 342 (368)
..|+.++|+..|+
T Consensus 123 ~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 123 AIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHcccHHHHHHHHH
Confidence 7778775544443
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.83 E-value=0.21 Score=45.72 Aligned_cols=59 Identities=19% Similarity=0.070 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-+..|..++..|++.+|+..|++|+.+-|.++. +...|+.+|-..|+.++|+.+++.+.
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 455677777788888888888888877777654 34445556667777777777776664
No 60
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.78 E-value=0.11 Score=48.62 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+..|..++..|+|.+|+.+|+.++..-......-..+...|+.+|...|+.++|+.+|+++.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455556666666666666655543211111123444555666666666666666666664
No 61
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.14 Score=51.12 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..+..+.+++.+++.|++.+|.+.|-.|++..+.+ +++.+-||.||-+.|+.++|.+++.+|-
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 66779999999999999999999999999999888 8899999999999999999999999984
No 62
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.73 E-value=0.21 Score=44.76 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHh-
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----------RPKEARIMYEKLQ- 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----------R~~EAiaLYkkL~- 345 (368)
-.-+..|..|...|..|+|.+|+..|+..++.-|... .-..+..++++|+-... ...+|+..++.|.
T Consensus 40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 3345578999999999999999999999998777655 45789999999875543 3458999999996
Q ss_pred cCCCHHHHHHHHHHhhhh
Q 017641 346 SHPNALVSKRARQFMFSF 363 (368)
Q Consensus 346 sHP~~eVrKQAkrLlyiL 363 (368)
.+|+-.-...|++.|--+
T Consensus 119 ~yP~S~y~~~A~~~l~~l 136 (203)
T PF13525_consen 119 RYPNSEYAEEAKKRLAEL 136 (203)
T ss_dssp H-TTSTTHHHHHHHHHHH
T ss_pred HCcCchHHHHHHHHHHHH
Confidence 899999998888766543
No 63
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.60 E-value=0.063 Score=37.35 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
++.+.||.+|...|+.++|+.+|+++. .||+-
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467889999999999999999999995 68864
No 64
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.12 Score=52.97 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-----------HHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 275 ~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
+..+.+...=..|..+|.+|+|..|+..|++|+..+....-.- =-+-+.||+||--+++..+||..|.+
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 4555555566679999999999999999999988887333221 23457899999999999999999999
Q ss_pred HhcCCCHHHH
Q 017641 344 LQSHPNALVS 353 (368)
Q Consensus 344 L~sHP~~eVr 353 (368)
.-.|-..+++
T Consensus 283 vLe~~~~N~K 292 (397)
T KOG0543|consen 283 VLELDPNNVK 292 (397)
T ss_pred HHhcCCCchh
Confidence 8666555554
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.49 E-value=0.29 Score=54.66 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..+..|..++..|+|.+|+.+|++|++.-+... .+.+.|+.+|...|+.++|+..|+++. .+|+-
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345678999999999999999999999876543 577789999999999999999999975 56663
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.45 E-value=0.31 Score=42.02 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC--
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR-- 333 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR-- 333 (368)
+..+.+.-|++-+.+.-++. ......+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||...|+
T Consensus 50 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKA 123 (172)
T ss_pred CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChH
Confidence 33444555554443332222 223456788999999999999999999999986654 3445667888887777
Q ss_pred ------------hHHHHHHHHHHh
Q 017641 334 ------------PKEARIMYEKLQ 345 (368)
Q Consensus 334 ------------~~EAiaLYkkL~ 345 (368)
.++|+.+|++..
T Consensus 124 ~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 124 EEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred hHhhCHHHHHHHHHHHHHHHHHHH
Confidence 466777776664
No 67
>PRK15331 chaperone protein SicA; Provisional
Probab=94.34 E-value=0.11 Score=47.67 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYE 342 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYk 342 (368)
.+.-+..|..|-.+|..|+|.+|..+|.-.+-.=.-+.+. .|-|+.||+..+++++|+.+|-
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y----~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY----TMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555669999999999999999999888765544444432 4556666666666666666664
No 68
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=0.36 Score=47.15 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQF 359 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrL 359 (368)
...|=.|+..|.+|+|.+|-..|..+....+-... -=++-|-|++|+..+|++++|.+.|++|. ..|.-.--++|+.-
T Consensus 179 nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K-ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 179 NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK-APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34555699999999999999999999887665444 45778899999999999999999999995 79999998888876
Q ss_pred hh
Q 017641 360 MF 361 (368)
Q Consensus 360 ly 361 (368)
+.
T Consensus 258 ~~ 259 (262)
T COG1729 258 LK 259 (262)
T ss_pred Hh
Confidence 53
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.23 E-value=0.26 Score=54.97 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
...|..++..|++.+|+..|++|+..-|.. ..+.+.|+.+|...|+.++|+++|+++. .+|+-
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 356888999999999999999999887664 3477899999999999999999999985 57854
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.11 Score=55.23 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHH-HHHHHHHhcCChHHHHHHHHHH-hcCC
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL-QWSICQDSLHRPKEARIMYEKL-QSHP 348 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL-wLAiAydA~GR~~EAiaLYkkL-~sHP 348 (368)
...+.+.=..|..+|..|+|.+|+.+|..|+++++--. |+. ..|-||+++|..++-|..|.+- .-.|
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep-----iFYsNraAcY~~lgd~~~Vied~TkALEl~P 180 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP-----IFYSNRAACYESLGDWEKVIEDCTKALELNP 180 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc-----hhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence 34455555679999999999999999999999999752 222 3788999999999999999764 3444
No 71
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.14 E-value=0.11 Score=32.94 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (368)
+--+..|..+|..|+|.+|+.+|++|+.+-+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3456778888888888888888888887655
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=93.98 E-value=0.44 Score=49.00 Aligned_cols=83 Identities=14% Similarity=0.039 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
...+..+.++.|++-. .++|..-. ..+..|..++..|++.+|+.+|++|+.+-|.... +.++++.++-..|
T Consensus 350 ~~g~~~~A~~~~~~Al--~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g 420 (553)
T PRK12370 350 IHSEYIVGSLLFKQAN--LLSPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHT 420 (553)
T ss_pred HccCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcc
Confidence 4456777888887655 45555433 2466688888888888888888888887766432 2223333333456
Q ss_pred ChHHHHHHHHHH
Q 017641 333 RPKEARIMYEKL 344 (368)
Q Consensus 333 R~~EAiaLYkkL 344 (368)
+.++|+..|+++
T Consensus 421 ~~eeA~~~~~~~ 432 (553)
T PRK12370 421 GIDDAIRLGDEL 432 (553)
T ss_pred CHHHHHHHHHHH
Confidence 666666666665
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.80 E-value=0.27 Score=55.18 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-. .++|. .+..+..|..++..|++.+|+.+|++|+.+-|.+. .+...|+++|...|+.
T Consensus 590 Gr~~eAl~~~~~AL--~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~----~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 590 GQPELALNDLTRSL--NIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS----NYQAALGYALWDSGDI 659 (987)
T ss_pred CCHHHHHHHHHHHH--HhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCH
Confidence 34455555565443 33442 12234556666666666666666666666655443 3455555566666666
Q ss_pred HHHHHHHHHHh-cCCC
Q 017641 335 KEARIMYEKLQ-SHPN 349 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP~ 349 (368)
++|+.+|++.. .+|+
T Consensus 660 eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 660 AQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 66666665543 3443
No 74
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.63 E-value=0.48 Score=53.19 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-. .++|... ...+..|..+.+.|++.+|+.+|++|++.-|.. ..+...|++||...|+.
T Consensus 623 G~~deA~~~l~~AL--~l~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~----~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 623 HNVPAAVSDLRAAL--ELEPNNS---NYQAALGYALWDSGDIAQSREMLERAHKGLPDD----PALIRQLAYVNQRLDDM 693 (987)
T ss_pred CCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCH
Confidence 34555666666544 4455543 236677899999999999999999999987744 47889999999999999
Q ss_pred HHHHHHHHHHh-cCCCH-HHHHHH
Q 017641 335 KEARIMYEKLQ-SHPNA-LVSKRA 356 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP~~-eVrKQA 356 (368)
++|++.|++.. -.|+- .|.-+.
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~ 717 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLT 717 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhh
Confidence 99999999985 56654 555333
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.33 E-value=0.29 Score=45.40 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
....|..++..|+|.+|+..|++++++-+.. ..+...++.+|...||.++|+.+|++..
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 4456888999999999999999999988776 3456678889999999999999999875
No 76
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.24 E-value=0.2 Score=46.96 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhc-CC
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL-HR 333 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~-GR 333 (368)
..+....|.+-.-+.........+-..|..+-..+..+++.+|+.+|++|++..-... ...+.+...+|..|+.. |+
T Consensus 51 ~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d 130 (282)
T PF14938_consen 51 WEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD 130 (282)
T ss_dssp CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3455566655544443334455666778888888888899999999999998765444 44477888899999999 99
Q ss_pred hHHHHHHHHHH
Q 017641 334 PKEARIMYEKL 344 (368)
Q Consensus 334 ~~EAiaLYkkL 344 (368)
.++|+..|++-
T Consensus 131 ~e~Ai~~Y~~A 141 (282)
T PF14938_consen 131 YEKAIEYYQKA 141 (282)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.99 E-value=0.45 Score=46.57 Aligned_cols=56 Identities=23% Similarity=0.196 Sum_probs=50.6
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.|+.++..|+|.+|+..|-+|..+-+.. +++-+-|++|||-+||+++|..-|.|..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d----~~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTD----WEAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCC----hhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 8999999999999999999999887776 4566778999999999999999999874
No 78
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.96 E-value=0.46 Score=50.85 Aligned_cols=65 Identities=11% Similarity=-0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
-.+-.+..++..|++.+|+..|++++...|.+. .+.+.+|++|...|+.++|+.+|++.. -+|+-
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 345678888888999999999999888877774 577888888888888888888888885 46763
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=92.95 E-value=0.98 Score=42.75 Aligned_cols=69 Identities=10% Similarity=-0.074 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
.++--+..|..+...|++.+|+..|++|+++-+.. ..+...++.+|...|+.++|+..|++.. ..|+-.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34557888999999999999999999999986654 5788899999999999999999999985 466543
No 80
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.79 E-value=0.38 Score=47.29 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHH--HHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEK--VMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEk--A~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
|.-.+..|..++..|+|.+|.++||+ +++.-+ ..++...|+.+|+..|++++|..+|++-
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677889999999999999999995 554433 3456678999999999999999999963
No 81
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.65 E-value=0.66 Score=49.06 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhh----hhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKE----ALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~----AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
+..+.+..|++-.. .+|.. ....+..|..++..|+|.+ |+.+|++|+..-|.. ..+.+.|+.+|...
T Consensus 227 ~~~eA~~~~~~al~--~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~ 297 (656)
T PRK15174 227 KYQEAIQTGESALA--RGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN----VRIVTLYADALIRT 297 (656)
T ss_pred CHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHC
Confidence 34445555554432 33432 2335667999999999996 899999999887643 47888999999999
Q ss_pred CChHHHHHHHHHHh-cCCCHH
Q 017641 332 HRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~~e 351 (368)
|+.++|+..|+++. .+|+..
T Consensus 298 g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999985 677743
No 82
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.43 E-value=0.64 Score=45.37 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc-c-----h--------------------HHHHHHH------
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE-L-----H--------------------GLAALQW------ 324 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~-L-----G--------------------GeaqLwL------ 324 (368)
++++..+=.+|..+|..|.|.+|...|..|++.|+.-+. + + --++||-
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 456667778899999999999999999999999997653 1 1 1233343
Q ss_pred ---HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 325 ---SICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 325 ---AiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
|-+|+.+-..++|+.=|++|. +.|...
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 778888999999999999996 777654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.30 E-value=0.68 Score=45.26 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..+..++.|..+|++|++..|...||+|++.=+- +. .+.+-+|..|+..|..+-|...|++-. .||+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YY---LAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH---HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 456677899999999999999999999999986543 33 356667889999999999999999874 5664
No 84
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.16 E-value=0.31 Score=31.43 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (368)
+.-+..|..++..|+|.+|+.+|++|+++-+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3456788888899999999999998887654
No 85
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.15 E-value=0.74 Score=44.98 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-+.+.|+.|...++.|.|.+|+.+||++...- +.|++.=.++|-|+-||=-.+..++|++.-..-.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45679999999999999999999999987544 4577779999999999999999999999887764
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.89 E-value=0.85 Score=48.11 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=50.0
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..|..++..|+|.+|+..|++|++..- ....-=+.+-..||.+|-..|+++||...|+.-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 479999999999999999999987654 333344889999999999999999987777653
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.82 E-value=1 Score=47.54 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc-CccchHHHHHH---HHHHHHhcCChHHHHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSELHGLAALQ---WSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~-~S~LGGeaqLw---LAiAydA~GR~~EAiaLYkkL 344 (368)
..+......+..+..+|+|++|-++++.||.+... -...+++|... ++..+++.+++++|+.+|++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 33444566689999999999999999999888766 23567777765 678899999999999999865
No 88
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.81 E-value=0.88 Score=48.78 Aligned_cols=75 Identities=9% Similarity=-0.000 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHh
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM 360 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl 360 (368)
..+..|..++.+|++.+|+..|++|+.+-|-+.. +.+.+++++...|+.++|.++++++. .+|.-..-+.-++.+
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4677799999999999999999999998876665 66778999999999999999999996 677655544444443
No 89
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=0.52 Score=49.42 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=55.8
Q ss_pred hcCCcCChhhH---------HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641 267 SVGLNVDPKLK---------SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 267 ~~Gl~Vd~~~~---------~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (368)
.++|++||.-. ..|+..=..|..+|..|.|+.|.+.|-.|+..-|-+..--...-+..|.++-.+||..||
T Consensus 227 ~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 227 QQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred hhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhh
Confidence 46788888753 445556667999999999999999999999887776665555555556666666666666
Q ss_pred HHHHHH
Q 017641 338 RIMYEK 343 (368)
Q Consensus 338 iaLYkk 343 (368)
|.-|..
T Consensus 307 isdc~~ 312 (486)
T KOG0550|consen 307 ISDCNE 312 (486)
T ss_pred hhhhhh
Confidence 655543
No 90
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.63 E-value=0.41 Score=30.03 Aligned_cols=31 Identities=10% Similarity=0.296 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
..|..|..++..|++.+|+..|+.+++.-|-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999999999987653
No 91
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.62 E-value=1.8 Score=40.51 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcC
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~G 332 (368)
.-+...+..|++.-. ..-...-.++.|..+|..|+|..|+.+|+.+...... =..|-..+-..|.-|+-.+|
T Consensus 159 ~lL~~A~~~f~~~~~------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 159 ELLEKAYEQFKKYGQ------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 334445555553332 3333445778999999999999999999999322221 14677888889999999999
Q ss_pred ChHHHHHHHHHHhcC
Q 017641 333 RPKEARIMYEKLQSH 347 (368)
Q Consensus 333 R~~EAiaLYkkL~sH 347 (368)
+.++.+.+|=.|-+|
T Consensus 233 ~~~~~l~~~leLls~ 247 (247)
T PF11817_consen 233 DVEDYLTTSLELLSR 247 (247)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999888765
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=90.30 E-value=1.4 Score=48.87 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=53.2
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhhhh
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ 364 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE 364 (368)
|..+...|+|..|++.|+++++.-|.+..+- +-|+++|-..++.++|+..++++. ..|. ..-. ..+.|+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~~ 180 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHHH
Confidence 6677888999999999999998888885333 456788888899999999999986 4565 3332 55566663
No 93
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.99 E-value=0.6 Score=29.85 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (368)
+.-+..|+.++..|++.+|+.+|++|++.-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4456677888888888888888888776543
No 94
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=89.68 E-value=0.89 Score=44.81 Aligned_cols=58 Identities=3% Similarity=-0.212 Sum_probs=46.0
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 347 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (368)
.++.++..|+|.+|+..|+++.+.-|.+. .+...++.+|-..|+.++|+.++.+|..+
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 37777888888888888888877776654 56677788888889999999999988754
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=2.2 Score=45.58 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=58.4
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.++|++ +++.-..|..+|..|+|+.||.+|.+|+..-|-.-+ .--+.|.||-.+|...+|++=|+++. -||+
T Consensus 352 ~~~pe~---A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 352 YINPEK---AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred hhChhH---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 456666 444555599999999999999999999888755433 44567899999999999999999985 5776
Q ss_pred H
Q 017641 350 A 350 (368)
Q Consensus 350 ~ 350 (368)
.
T Consensus 425 ~ 425 (539)
T KOG0548|consen 425 F 425 (539)
T ss_pred H
Confidence 4
No 96
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.48 E-value=2.1 Score=38.60 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCChhhHHHHH-HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHH
Q 017641 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECE-KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW 324 (368)
Q Consensus 246 teEEkaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~e-ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL 324 (368)
+.++.+++-+++...|..|+++. .+++++ ...+.|.-+...|++..|+..|+.+.+.+ +-.|-.+.|++
T Consensus 8 ~~~~~~~~~~~Le~elk~~~~n~-------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l 77 (177)
T PF10602_consen 8 TKAKNAEELEKLEAELKDAKSNL-------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCL 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHH
Confidence 44455777888888999998776 444554 45567999999999999999999999886 45566666665
Q ss_pred HHHHHh--cCChHHHHHHHHHHhc
Q 017641 325 SICQDS--LHRPKEARIMYEKLQS 346 (368)
Q Consensus 325 AiAydA--~GR~~EAiaLYkkL~s 346 (368)
.++.=+ .+..........+..+
T Consensus 78 ~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 78 NVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 554333 3455555555555543
No 97
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.24 E-value=1.8 Score=45.11 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=69.4
Q ss_pred hcCCcCChhh---HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---------------HHHHHHHHHHH
Q 017641 267 SVGLNVDPKL---KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------GLAALQWSICQ 328 (368)
Q Consensus 267 ~~Gl~Vd~~~---~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------GeaqLwLAiAy 328 (368)
++-|.||+=. +...-+.-+.|..+|.+|+|.+|+..|-++|+.-+-+--++ .|+-..+|++|
T Consensus 81 ~~dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 81 KQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hccCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4677888754 33333445679999999999999999999999988776666 34444455544
Q ss_pred ---------------HhcCChHHHHHHHHHH-hcCC-CHHHHHHHHHHhh
Q 017641 329 ---------------DSLHRPKEARIMYEKL-QSHP-NALVSKRARQFMF 361 (368)
Q Consensus 329 ---------------dA~GR~~EAiaLYkkL-~sHP-~~eVrKQAkrLly 361 (368)
.++|...||..=|+.. .-.| +.+++|+..+|.-
T Consensus 161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 4678888999888876 3344 5788888877653
No 98
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=0.94 Score=46.78 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH-HHHHHHHh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA-RIMYEKLQ 345 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL~ 345 (368)
...|+.|+.++.-|.|+.|...|++|+++=|.| =.|+.+|+.|-+-+-++++. ..||+++=
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N----ka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSN----KAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888999999999888888887 46778888888888887776 78888774
No 99
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.70 E-value=1.6 Score=35.02 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=48.2
Q ss_pred HHHhcCchhhhhHHHHHHHhhcccCccch-----HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 289 SLMDSGKLKEALPFYEKVMNKMVFKSELH-----GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+..+|+|.+|++.|....+......... ..+.|.+|.++-..|+.++|+..++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46789999999999999988876666544 5778899999999999999999998763
No 100
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.63 E-value=1.7 Score=42.55 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.|+.+..++..|+|..|...|..=++.-|. |.+-..+..||.-||=+.|+.++|...|-.+. .||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 899999999999999999999998888765 55678999999999999999999999999995 5664
No 101
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.44 E-value=1.4 Score=42.75 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH--HHHHHHhcCChHHHHHHHHHH-hcCCC
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHRPKEARIMYEKL-QSHPN 349 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR~~EAiaLYkkL-~sHP~ 349 (368)
..+..|..|..+-+-|+|.+|+++|++++. ..+.|+.+|- +|.|+=++++..+|+...++| ..||.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 456788999999999999999999999875 3445555544 567778889999999999988 45654
No 102
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.37 E-value=4.8 Score=33.40 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------------HHHHHHHHHHHHhcCChHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------GLAALQWSICQDSLHRPKEARI 339 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------GeaqLwLAiAydA~GR~~EAia 339 (368)
.+++..+..|..+...|.-..+++.|++|+.+....---+ =.+...++.++...|+.++|+.
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4677788889999999999999999999998775432111 2344557778889999999999
Q ss_pred HHHHHh-cCCCHHH
Q 017641 340 MYEKLQ-SHPNALV 352 (368)
Q Consensus 340 LYkkL~-sHP~~eV 352 (368)
+|+++. .+|.-+-
T Consensus 84 ~~~~~l~~dP~~E~ 97 (146)
T PF03704_consen 84 LLQRALALDPYDEE 97 (146)
T ss_dssp HHHHHHHHSTT-HH
T ss_pred HHHHHHhcCCCCHH
Confidence 999996 7998764
No 103
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=88.27 E-value=1.1 Score=45.97 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARI 339 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAia 339 (368)
-+-.|+.++..|.|..||+.||.|.+. +-.+=|||.--|..||..+|+.++.+.
T Consensus 217 si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 217 SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 345699999999999999999998764 567889999999999999999666543
No 104
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.10 E-value=0.71 Score=31.07 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=15.8
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHh
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMN 308 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~ 308 (368)
..|..++..|+|.+|+++||+|+.
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777777777777553
No 105
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.81 E-value=1.5 Score=31.73 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHhhc
Q 017641 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKM 310 (368)
Q Consensus 251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v 310 (368)
..+..+..+.+..|.+-+ .+||..- .-.+..|..++..| +|.+|+..|++|+++-
T Consensus 13 ~~~~~~~~~A~~~~~~ai--~~~p~~~---~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAI--ELDPNNA---EAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHTTHHHHHHHHHHHHH--HHSTTHH---HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCCH---HHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445667888888887655 6677643 35888999999999 8999999999998864
No 106
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=87.51 E-value=1.3 Score=34.21 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcc--cCccchHHHHHHHHHHHHhcCChHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMY 341 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLY 341 (368)
++|..|..+|+.|+|-+|=+.||.+-...+ .+.-+-|.||+--|+.+-..|+..-|..|+
T Consensus 1 ~~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 1 EALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 478899999999999999999999865544 566788999999999898999998888775
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=87.28 E-value=2.8 Score=38.22 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cC----CCHHHHHHHHH
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH----PNALVSKRARQ 358 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH----P~~eVrKQAkr 358 (368)
|-.|--.=..|+|.+|+..|+.|..+-+- .-+.-..++.||=++|+.++|+.-++.-. .+ -+..|+++|+.
T Consensus 73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d----dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 73 FRLGECCQAQKHWGEAIYAYGRAAQIKID----APQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 33466666789999999999999887653 35677889999999999999998888664 33 47789999999
Q ss_pred Hhhhhh
Q 017641 359 FMFSFQ 364 (368)
Q Consensus 359 LlyiLE 364 (368)
+|-.|.
T Consensus 149 ~L~~l~ 154 (157)
T PRK15363 149 MLQQLS 154 (157)
T ss_pred HHHHhh
Confidence 986653
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=87.05 E-value=2.6 Score=46.67 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 330 (368)
Q Consensus 251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 330 (368)
..|.-++.+.+..+++-. ..+|..-.. .++....++..|++.+|+.++|+++ ....+--...+-+|.+|-.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL--~~~P~~~~a---v~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 44 RARAGDTAPVLDYLQEES--KAGPLQSGQ---VDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHhCCCHHHHHHHHHHHH--hhCccchhh---HHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 334444455555555443 344443211 1144566677799999999999988 2233444556667889999
Q ss_pred cCChHHHHHHHHHHh-cCCC-HHHH
Q 017641 331 LHRPKEARIMYEKLQ-SHPN-ALVS 353 (368)
Q Consensus 331 ~GR~~EAiaLYkkL~-sHP~-~eVr 353 (368)
.|+.++|+.+|+++. .+|+ +++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l 139 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLI 139 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 999999999999995 5665 3443
No 109
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=86.84 E-value=5.5 Score=39.33 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=34.9
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHH
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSK 354 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrK 354 (368)
.++.+..+|++..|..+|+++.+..+-. .+ .+.+.++..+-..|+.++|++..+.+. .+| |+.+.+
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~-~l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ 191 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELAGND-NI--LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLK 191 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcC-ch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3556666666666666666665433221 11 123334555555666666666666663 455 333433
No 110
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.42 E-value=1.4 Score=28.56 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=12.2
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHh
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMN 308 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~ 308 (368)
..|..++.+|+|.+|+.++++|++
T Consensus 7 ~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 7 NLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcchhhHHHHHHHH
Confidence 345555555555555555555443
No 111
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.37 E-value=3.5 Score=29.62 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
+..+..+.++.|+.=+ ..+|. ..+..+..|..++..|+|.+|+.+|+.+++.-|.
T Consensus 9 ~~g~~~~A~~~~~~~l--~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQAL--KQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HCTHHHHHHHHHHHHH--CCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HcCCHHHHHHHHHHHH--HHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3345666666676444 33455 4455888999999999999999999999987654
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=86.09 E-value=2.1 Score=48.14 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+.+.--++..+.+|+.|+|.+|+.+|-.++..-.-+. +-+-+-+|-||-.+|+.++||.-|++..
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kvl 476 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN---AFVWYKLARCYMELGEYEEAIEFYEKVL 476 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc---hhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555667778888888888888888877765544444 3333336778888888888888887763
No 113
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.06 E-value=2.3 Score=31.64 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
-...+...+..|......|+|.+|+++|++|++..
T Consensus 42 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 42 HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34557778899999999999999999999998753
No 114
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.79 E-value=4 Score=37.09 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--cCChhh---H----HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch
Q 017641 247 AEARAAKEERTRQLLAAYKKSVGL--NVDPKL---K----SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 317 (368)
Q Consensus 247 eEEkaar~~rtke~LaaYrk~~Gl--~Vd~~~---~----~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG 317 (368)
+-||.-.+.-..+.-+.||+-|-+ +|-++. . .-|-..| ...+-.-|+|.+++..-+.|+-..++..+|+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~L--s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGL--SGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHH--HHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHH--HHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 345555555666677777776532 233321 1 2233332 3456788999999999999999999999998
Q ss_pred -HHHHHH------HHHHHHhcCChHHHHHHHHH
Q 017641 318 -GLAALQ------WSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 318 -GeaqLw------LAiAydA~GR~~EAiaLYkk 343 (368)
-+-.+| -|.|++.+||.+||+.-|+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 233344 56889999999999988875
No 115
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.67 E-value=1.6 Score=29.38 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 017641 322 LQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk 343 (368)
..|+.+|...|++++||.+|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4689999999999999999998
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.33 E-value=2.6 Score=47.48 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHH-----------HHHHHHhcCchhhhhHHHHHHHhhcccCccch--------
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALK-----------DGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------- 317 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~-----------~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-------- 317 (368)
..+++..|+..- --.+..+.|+++++ .|-.++.+|+|.+|.-. .+++..+.++...
T Consensus 34 ~~~Li~~~~~~~---~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 34 LDDLIDAYKSEN---LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence 445666663221 12334555555544 48889999999998877 8888888887221
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 318 -------GLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 318 -------GeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
=.+-.-||+|||.+|+.++|+++|+++..
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 14667799999999999999999999963
No 117
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.03 E-value=1.6 Score=30.27 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE 315 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~ 315 (368)
..+..|..++..|++.+|+..|+++++..|.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 3567799999999999999999999999887753
No 118
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=83.91 E-value=1.8 Score=48.59 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-|..|.-+|+.|.|.+|+++||+|+...|.+. .+.+-||..|+-.|++++|...-.++.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNL----DARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 46779999999999999999999999988765 578999999999999999987777654
No 119
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.90 E-value=2.1 Score=27.76 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 320 AALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
+...|+++|-..|+.++|+.+|++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4567999999999999999998876
No 120
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.63 E-value=11 Score=28.39 Aligned_cols=52 Identities=29% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
....|.+..|+..+..++...... ...+...++.+|...+..++|+..+.+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 445555555555555555544443 3444444555555555555555555554
No 121
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.42 E-value=2.6 Score=26.53 Aligned_cols=31 Identities=26% Similarity=0.097 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
++..+++.+|-..|+.++|+..|++.. ..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 466789999999999999999999985 3443
No 122
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.76 E-value=4.6 Score=33.58 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 340 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 340 (368)
.++.+.++.|..+|+.-..++||.-+++|+..+.... -==.+.=+|+.||.-.|++.+.++-
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999988743 1123334788999999999998763
No 123
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.65 E-value=22 Score=32.69 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
..+..+|++-| -+.|+..+. .+=.|..+|.||++.+|+..|+.+.+. +...+.+.--+|.||.+.|..
T Consensus 27 ~D~e~lL~ALr-----vLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 27 DDAEALLDALR-----VLRPEFPEL---DLFDGWLHIVRGDWDDALRLLRELEER----APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHHH-----HhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHcCCh
Confidence 34455555555 344555444 566799999999999999999986433 344455555679999999986
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 017641 335 KEARIMYEKLQSHPNALVSKRARQFMF 361 (368)
Q Consensus 335 ~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (368)
.==+--.+-|.+.+++..+.-.++|+=
T Consensus 95 ~Wr~~A~evle~~~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDARALVRALLA 121 (160)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 544444556778889988888888763
No 124
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.02 E-value=1.9 Score=27.41 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 017641 320 AALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkk 343 (368)
+.+.|+.+|-..|+.++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567889999999999999988863
No 125
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.55 E-value=1.9 Score=24.30 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
+..|..++..|+|.+|+..|+.++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45566777777777777777776653
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=81.31 E-value=4.8 Score=42.73 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=52.7
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.|+.+++.+++.+|.+.|.+|+.+-|-. ..++|.++.+|=..|+.+|||.+-..+. ..|+
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~----~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS----PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 4899999999999999999999998876 5678889999999999999999988875 4443
No 127
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.14 E-value=6.7 Score=42.92 Aligned_cols=95 Identities=22% Similarity=0.275 Sum_probs=68.6
Q ss_pred HHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHH
Q 017641 261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 340 (368)
Q Consensus 261 LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 340 (368)
+.-||+.+ -|||.-.- ..|=.|..++..++|..|.=+|++|++.=|.++.+ .--+.+.|+.+|+.++|+.+
T Consensus 475 ~~~fr~Al--~~~~rhYn---AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi----~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 475 MKSFRKAL--GVDPRHYN---AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI----LCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred HHHHHhhh--cCCchhhH---HHHhhhhheeccchhhHHHHHHHhhhcCCccchhH----HhhhhHHHHHhhhhhHHHHH
Confidence 34576555 44555443 37888999999999999999999999999888854 33456779999999999999
Q ss_pred HHHHhc--CCCHHHHHHHHHHhhhhh
Q 017641 341 YEKLQS--HPNALVSKRARQFMFSFQ 364 (368)
Q Consensus 341 YkkL~s--HP~~eVrKQAkrLlyiLE 364 (368)
|++-.. --++-.+=+-.++||++.
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 998641 222333334456666654
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.61 E-value=3.3 Score=44.68 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc----cch--------------------------HHHHHHHHHHHHhc
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELH--------------------------GLAALQWSICQDSL 331 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LG--------------------------GeaqLwLAiAydA~ 331 (368)
..|++|..+|+.|.+.+|+=+||.|+..=|.+- .|| =++-|-||++|-.-
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 579999999999999999999999987665442 122 34556688888887
Q ss_pred CChHHHHH-HHHHHhcCCC
Q 017641 332 HRPKEARI-MYEKLQSHPN 349 (368)
Q Consensus 332 GR~~EAia-LYkkL~sHP~ 349 (368)
|-..+|.. ||+.|+.||-
T Consensus 367 g~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 77766654 5677777763
No 129
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.55 E-value=4.7 Score=37.67 Aligned_cols=73 Identities=25% Similarity=0.254 Sum_probs=54.4
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH--HHHHHHhcCChHHHHHHHHHHhcCCCH----HHHHHHHHH
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHRPKEARIMYEKLQSHPNA----LVSKRARQF 359 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR~~EAiaLYkkL~sHP~~----eVrKQAkrL 359 (368)
|+...+.--|+.|+++|++|...-.+...--.++.|- ++--+--+|+.+||+..+.+|..|+.. .+..+||.+
T Consensus 132 ~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 132 GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 4556666779999999999999888755422333333 566678899999999999999876654 567777765
No 130
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=80.01 E-value=6.2 Score=41.69 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+=..+.+.+.|+|.+|+++|++....|.-+. .+.-..|.+|-.+||.+||...|+.|. +.|.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd 70 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPD 70 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34445667889999999999999766665543 234456889999999999999999996 6665
No 131
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=79.64 E-value=14 Score=31.89 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=58.0
Q ss_pred HHHHHHhhcCCcCChhh-----HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc-----ccCccchHHHHHHHHHHHH
Q 017641 260 LLAAYKKSVGLNVDPKL-----KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM-----VFKSELHGLAALQWSICQD 329 (368)
Q Consensus 260 ~LaaYrk~~Gl~Vd~~~-----~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v-----~~~S~LGGeaqLwLAiAyd 329 (368)
-.++|+...=.+.+|.. .+.+-..+..++.++++|++.++-.++-+|.+.+ ..+-+-||++.=+|.--|+
T Consensus 6 ~~~~Y~~~~v~tasp~~Li~mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~ 85 (124)
T TIGR00208 6 PYQAYQQNSVNTASPGELTLMLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYD 85 (124)
T ss_pred HHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 45778877555666663 4888899999999999999999999999987776 3445678999999988887
Q ss_pred hcC
Q 017641 330 SLH 332 (368)
Q Consensus 330 A~G 332 (368)
-+-
T Consensus 86 y~~ 88 (124)
T TIGR00208 86 YMY 88 (124)
T ss_pred HHH
Confidence 643
No 132
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=79.25 E-value=9.1 Score=42.22 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHH----HhhcccCccchHHHHHHHHHHHHhcC
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKV----MNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA----~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
--++|++|++...-++++...+.-+..+-.-+...+.|.++.|+++|.+- ++.+++ +|+ -|.-+--++
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~-----~e~---ka~l~~kl~ 233 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF-----EET---KADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH-----hhh---HHHHHHHHh
Confidence 34678999988887899999999999999999999999999999999874 333332 222 355677889
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 017641 333 RPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 333 R~~EAiaLYkkL~-sHP~ 349 (368)
|.+||+.+|+.|. +.|+
T Consensus 234 ~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPD 251 (700)
T ss_pred hHHhHHHHHHHHHhhCch
Confidence 9999999999996 6775
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=78.87 E-value=6.6 Score=41.72 Aligned_cols=63 Identities=11% Similarity=-0.064 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc--hHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--HGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--GGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
....+..+...|++.+|+.+|+++++........ -..+.++++++|...|+.++|+...++..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3467888999999999999999999875433322 24577889999999999999998887763
No 134
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.86 E-value=13 Score=28.12 Aligned_cols=58 Identities=31% Similarity=0.234 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHH-HHHhcCChHHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI-CQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAi-AydA~GR~~EAiaLYkkL 344 (368)
.+..|...+..|.|..++..++++....... ......+.. +|...|+.++|+..|++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344555555555555555555555433333 222222233 555666666666666654
No 135
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.37 E-value=6.9 Score=41.95 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
.|-+.+.+||.-+ +|+|..... =|-.||.+=--++--=|+=+|.+|.+.-|-.|++ -.-|.-||+.++|.+
T Consensus 379 Nt~AAi~sYRrAv--di~p~DyRA---WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRl----w~aLG~CY~kl~~~~ 449 (559)
T KOG1155|consen 379 NTHAAIESYRRAV--DINPRDYRA---WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRL----WVALGECYEKLNRLE 449 (559)
T ss_pred ccHHHHHHHHHHH--hcCchhHHH---HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHH----HHHHHHHHHHhccHH
Confidence 4566778888544 777776544 4666766655566666888889998888888763 122667999999999
Q ss_pred HHHHHHHHHh
Q 017641 336 EARIMYEKLQ 345 (368)
Q Consensus 336 EAiaLYkkL~ 345 (368)
|||.-|++-.
T Consensus 450 eAiKCykrai 459 (559)
T KOG1155|consen 450 EAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 136
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.19 E-value=4.8 Score=22.50 Aligned_cols=26 Identities=27% Similarity=0.080 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 320 AALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+-..+++||...|+.++|+..|++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678999999999999999999875
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=77.85 E-value=7.9 Score=39.68 Aligned_cols=68 Identities=15% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~e 351 (368)
++....+++.++.+|+|+.|++...+|+...|..- +.-..||.||-.+|+.++|+.-...+-.+|+.+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f----~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF----ETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 44455679999999999999999999999877543 455669999999999999998776665554443
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.69 E-value=8.3 Score=38.61 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=51.3
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (368)
--.||++|+...|..-+..-.+..+..-|+++.- ||-|||.|+.++|+..|..|- -.|.-.+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk----am~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK----AMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH----HHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 4578999999999999999888886666877764 678999999999999999995 4555443
No 139
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=77.40 E-value=5.8 Score=45.26 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=54.5
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcc--cCccch----HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELH----GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~--~~S~LG----GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..|-..|..|.+..|..+|..|...+- .++..| =-....||.|+|.++++..|-.||+.+. -||+-
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 357888999999999999999988854 444444 1246789999999999999999999996 69974
No 140
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.20 E-value=5.3 Score=25.39 Aligned_cols=27 Identities=22% Similarity=0.079 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 319 LAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
++-+.++.+|...|+.++|+..|++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355779999999999999999999874
No 141
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.88 E-value=9.1 Score=40.36 Aligned_cols=109 Identities=24% Similarity=0.237 Sum_probs=75.1
Q ss_pred cccCCCcccCCCCccCcHHHHH-HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHh
Q 017641 230 KTFGGGRTIRPGDVLETAEARA-AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMN 308 (368)
Q Consensus 230 kayGGGR~IrpGe~lEteEEka-ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (368)
++=|+|.+||-|...-.=|+-. .|+=.-.-.|-.++. ++|.+.+ -...+=.|--+|--|.|++|+.-|+-+|+
T Consensus 12 ~~~g~~~~~kkarK~P~Ledfls~rDytGAislLefk~----~~~~EEE--~~~~lWia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 12 KRNGAGPTIKKARKMPELEDFLSNRDYTGAISLLEFKL----NLDREEE--DSLQLWIAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred cccCCCCcchhhhcCchHHHHHhcccchhHHHHHHHhh----ccchhhh--HHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 4668888898887653333332 233233334445543 5555544 33345567788999999999999999998
Q ss_pred hcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 017641 309 KMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (368)
Q Consensus 309 ~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (368)
.-..+ |++-+.||.|+==+|...||.++-.+....|
T Consensus 86 ~~~~~----~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~p 121 (557)
T KOG3785|consen 86 KDDAP----AELGVNLACCKFYLGQYIEAKSIAEKAPKTP 121 (557)
T ss_pred cCCCC----cccchhHHHHHHHHHHHHHHHHHHhhCCCCh
Confidence 65555 4555889999999999999999877766555
No 142
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=76.54 E-value=6.2 Score=42.37 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=28.7
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 314 SELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 314 S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
++..=-+.--||||.-.+||.+|||.|++.|. -+|..
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 33334455569999999999999999999996 47753
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.27 E-value=6.5 Score=42.24 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------------------------HHHHHHHHHHHHh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQDS 330 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAydA 330 (368)
.+.-+.|..||..|+|..||.+|-.|+.+-+.+-.|- +..---+.-|+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 4556779999999999999999999999988865443 2233345678889
Q ss_pred cCChHHHHHHHHH-HhcCCCHHHHH
Q 017641 331 LHRPKEARIMYEK-LQSHPNALVSK 354 (368)
Q Consensus 331 ~GR~~EAiaLYkk-L~sHP~~eVrK 354 (368)
+||+++|+.-|.. |..-|+-.+=+
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~ 107 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLK 107 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHH
Confidence 9999999999976 56667655433
No 144
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=75.92 E-value=8.8 Score=37.18 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh-HHHHHHHHHHh-cCC
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP-KEARIMYEKLQ-SHP 348 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~-~EAiaLYkkL~-sHP 348 (368)
.+-..|..|+|.+|...|+.|++.=+. ...+...+++|..-.|.. +++...-.+|+ .||
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 355667777777777777777653322 356777777777777777 44555666665 566
No 145
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.73 E-value=3.8 Score=44.26 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cch--HHHHHH--HH
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELH--GLAALQ--WS 325 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LG--GeaqLw--LA 325 (368)
+--.|..+.+.+|++-. .+.|.- ++.+|-.|-..|+-|.|++|++||-.|+......+ .=+ +-=.|| |=
T Consensus 475 AN~~~s~EAIsAY~rAL--qLqP~y---VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR 549 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRAL--QLQPGY---VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR 549 (579)
T ss_pred cCCcccHHHHHHHHHHH--hcCCCe---eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence 34456677788887543 444542 23468889999999999999999999987665522 212 212344 67
Q ss_pred HHHHhcCChHHHHHHH
Q 017641 326 ICQDSLHRPKEARIMY 341 (368)
Q Consensus 326 iAydA~GR~~EAiaLY 341 (368)
+++-+.+|.|-++..|
T Consensus 550 ~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 550 LALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHcCCchHHHHhc
Confidence 8999999998666554
No 146
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=74.62 E-value=6.5 Score=44.88 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=42.9
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHH
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 340 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 340 (368)
.|--++++|+|+.||+.||.++..--.+++. +|...||-||...|+.++|..-
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~--~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRS--EVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCH--HHHHHHHHHHHHhhhHHHHHHH
Confidence 4778899999999999999998887766654 4777888888888888888753
No 147
>PRK15331 chaperone protein SicA; Provisional
Probab=73.70 E-value=12 Score=34.66 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=55.1
Q ss_pred HHHHHhcCchhhhhHHHHHHHhh--cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCHHHHHHHHHHhhhh
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNK--MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNALVSKRARQFMFSF 363 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~--v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~eVrKQAkrLlyiL 363 (368)
|--.--.|+|+.|++.|--|..+ -++.. .+..+.||=++|+...|+.-++.... .-+..|+.+|..+|-.|
T Consensus 78 aa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 78 AAVCQLKKQFQKACDLYAVAFTLLKNDYRP------VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCc------cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 44445568889999988886443 33333 56679999999999999998888864 44788999999998776
Q ss_pred hc
Q 017641 364 QV 365 (368)
Q Consensus 364 EA 365 (368)
+-
T Consensus 152 ~~ 153 (165)
T PRK15331 152 KT 153 (165)
T ss_pred Hc
Confidence 53
No 148
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=73.57 E-value=8.9 Score=39.94 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.+..|+.+|.++.+.+|-.+||.|+.+ +...+.-.|+|-+|++.|+.++|.++++.-
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL-----RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 566799999999999999999988765 345667789999999999999999999864
No 149
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=72.58 E-value=5.6 Score=28.54 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE 315 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~ 315 (368)
+..+.+.-|++=. ..+|...+. .+..+..++..|+|.+|...|++++..-+.+..
T Consensus 6 ~~~~A~~~~~~~l--~~~p~~~~~---~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 6 DYDEAIELLEKAL--QRNPDNPEA---RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHHHHHHHHHHH--HHTTTSHHH---HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred CHHHHHHHHHHHH--HHCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 4455555554332 344554333 678899999999999999999999887776443
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=71.59 E-value=36 Score=36.38 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=45.8
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccc-hHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-HGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-GGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.|..++..|+|.+|..+++.|++..+..... -+.+...++.++-..|+.++|+.+|++..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677888999999999999998865544322 24455667888888999999988888764
No 151
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.20 E-value=19 Score=37.94 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=89.1
Q ss_pred CccCcHHHHHHHHHHHHHHHHHHHhhcCCcCChh------hH---H-------------HHHHHHHHHHHHHhcCchhhh
Q 017641 242 DVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK------LK---S-------------ECEKALKDGDSLMDSGKLKEA 299 (368)
Q Consensus 242 e~lEteEEkaar~~rtke~LaaYrk~~Gl~Vd~~------~~---~-------------e~eea~~~Gk~AmerGkYr~A 299 (368)
..+..--++.......+-.+.-|.-=..+....- +. . .+...|=.|.-++..|++..|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 3344455666667777777777765444433332 11 1 123356668999999999999
Q ss_pred hHHHH-------HHHhhcccCccchHHHHHHHHHHHHhcCChHH----HHHHHHHHh----cCCCHHHHHHHHHHhhhhh
Q 017641 300 LPFYE-------KVMNKMVFKSELHGLAALQWSICQDSLHRPKE----ARIMYEKLQ----SHPNALVSKRARQFMFSFQ 364 (368)
Q Consensus 300 V~~lE-------kA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E----AiaLYkkL~----sHP~~eVrKQAkrLlyiLE 364 (368)
+.+|. ......+..++|--.+.|.+++.|+.-++..+ +-.+..+|. .||+..++.-..-++.+++
T Consensus 424 ~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 424 LYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN 503 (608)
T ss_pred HHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh
Confidence 99999 55566677788999999999999999998766 778888774 6999998887777776665
Q ss_pred c
Q 017641 365 V 365 (368)
Q Consensus 365 A 365 (368)
.
T Consensus 504 ~ 504 (608)
T PF10345_consen 504 T 504 (608)
T ss_pred h
Confidence 3
No 152
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=69.99 E-value=47 Score=32.75 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..++..+..|+-+++||.|=.|+--++.+++. -..|.---++-.+|.-+|.++|-.++|...=+-|. .-|+-
T Consensus 165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 45566889999999999999999999999999 67778888999999999999999999999888885 34443
No 153
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=69.80 E-value=27 Score=33.06 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=57.7
Q ss_pred cCChh-hHHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHhhccc------Cc----cchHHHHHHHHHHHHhcCChH---
Q 017641 271 NVDPK-LKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKMVF------KS----ELHGLAALQWSICQDSLHRPK--- 335 (368)
Q Consensus 271 ~Vd~~-~~~e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v~~------~S----~LGGeaqLwLAiAydA~GR~~--- 335 (368)
..+|. .+..|+.-|..|+.+++++ +|..|+.+|+.|.+.++. .+ ++-..+-.-||.||=..+..+
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 44566 5788899999999999999 999999999999998744 12 222455566888887777643
Q ss_pred HHHHHHHHHh-cCCC
Q 017641 336 EARIMYEKLQ-SHPN 349 (368)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (368)
.|+.+-+.++ -||+
T Consensus 105 ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 105 KALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHhCCC
Confidence 4555555564 3666
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=69.58 E-value=9.7 Score=27.67 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
.+..+.+..+..-+ .++|. .....+..|..++..|+|.+|+..|+.+++..+.
T Consensus 9 ~~~~~A~~~~~~~l--~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 9 EDYEEALEVLERAL--ELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CCHHHHHHHHHHHH--HhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 33444444444333 44555 3445778899999999999999999999988873
No 155
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=69.43 E-value=10 Score=39.12 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~ 350 (368)
.+-.|+.+.-+|+..+|++.|+.++..-..--.++-.....++.||=..++.++|...+..|..|-+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 56778999999999999999999885444445788888888999999999999999999999876554
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.49 E-value=10 Score=24.26 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 320 AALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+-..++.||...|+.++|+.-|++-.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45678999999999999999999874
No 157
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.36 E-value=9.3 Score=42.63 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=51.0
Q ss_pred HHHHHHHHH-HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH-HhcCC
Q 017641 277 KSECEKALK-DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK-LQSHP 348 (368)
Q Consensus 277 ~~e~eea~~-~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk-L~sHP 348 (368)
.-++.+.|. .|..+-+||++.+|+.+|+.++++-+-. -++-+.||+||.+-|+.+.|-..|.. |+-.|
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~f----ida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKF----IDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh----hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 345666777 6888888999999999999888776543 35677788888888888888877764 34455
No 158
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.18 E-value=14 Score=33.81 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 320 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea 320 (368)
-+-+..+.|..+|.+|.+.+++.+|-.|+..++....|-+--
T Consensus 80 ~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 80 FFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred HHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 334777889999999999999999999999988877665443
No 159
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.64 E-value=6.7 Score=41.29 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=44.3
Q ss_pred HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHH
Q 017641 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALV 352 (368)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eV 352 (368)
...+-+|--|+.+||-... ..-+--..+++|+|-||=-+|..++|...|+-|. ..|+.++
T Consensus 32 fls~rDytGAislLefk~~---~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN---LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhc---cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 4556678888888877652 1122225789999999999999999999999996 4555443
No 160
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.77 E-value=14 Score=32.62 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (368)
+||-.++. -..+|+||+|.+|+.+.+.. .--.+.-|+|.|-=.+|-...+-.-.-.|.+.-.+++-.=|.
T Consensus 38 ~E~v~lIR-lsSLmNrG~Yq~Al~l~~~~---------~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg~p~lq~Faa 107 (115)
T TIGR02508 38 EEAVQLIR-LSSLMNRGDYQSALQLGNKL---------CYPDLEPWLALCEWRLGLGSALESRLNRLAASGDPRLQTFVA 107 (115)
T ss_pred HHHHHHHH-HHHHHccchHHHHHHhcCCC---------CCchHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44444443 56899999999999988764 133567799999999998888777777777777777766555
Q ss_pred HHh
Q 017641 358 QFM 360 (368)
Q Consensus 358 rLl 360 (368)
-|+
T Consensus 108 g~r 110 (115)
T TIGR02508 108 GMR 110 (115)
T ss_pred HHH
Confidence 443
No 161
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.39 E-value=12 Score=41.88 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.++..|...+|.|+..+|+.+|++|++.-+--+ .+.-.||+.|+--|..++||.-|+.-
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~a----aa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFA----AAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhh----hhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 445556677777777777777777766544332 33445666777777777777777654
No 162
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=66.24 E-value=7.1 Score=26.35 Aligned_cols=33 Identities=15% Similarity=-0.080 Sum_probs=25.8
Q ss_pred HHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHH
Q 017641 303 YEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARI 339 (368)
Q Consensus 303 lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAia 339 (368)
|++|+++=|.+ .++-.+|+.+|...|+.++|++
T Consensus 2 y~kAie~~P~n----~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNN----AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCC----HHHHHHHHHHHHHCcCHHhhcC
Confidence 56666666555 4677899999999999999973
No 163
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=65.78 E-value=11 Score=39.48 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc----------------cch--------------HHHHHHHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----------------ELH--------------GLAALQWSI 326 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----------------~LG--------------GeaqLwLAi 326 (368)
.++++.-|+.|+.++-+|+|.+|+-+|-+|++.=+-+- +.+ --+.||-..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 35667788888888888888888888888776543221 100 123444455
Q ss_pred HHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 017641 327 CQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 356 (368)
Q Consensus 327 AydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 356 (368)
.+=..|..++|++=++++. +.|+.+..+.|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 5556667777877777774 55655555444
No 164
>PRK05685 fliS flagellar protein FliS; Validated
Probab=65.51 E-value=46 Score=28.89 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=54.9
Q ss_pred HHHHHh----hcCCcCChhh-----HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc-----ccCccchHHHHHHHHH
Q 017641 261 LAAYKK----SVGLNVDPKL-----KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM-----VFKSELHGLAALQWSI 326 (368)
Q Consensus 261 LaaYrk----~~Gl~Vd~~~-----~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v-----~~~S~LGGeaqLwLAi 326 (368)
.++|+. ..=.+.+|.. .+.+-..++.++.+++.|++.++-.++-+|.+.+ ..+..-||++.=+|.-
T Consensus 7 ~~~Y~~~~~~~~v~tasp~~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~ 86 (132)
T PRK05685 7 YQAYQQVSVESQVSSASPHKLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSA 86 (132)
T ss_pred HHHHHhccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHH
Confidence 456776 3334455552 4778888999999999999999999999997765 3455678999988888
Q ss_pred HHHhcC
Q 017641 327 CQDSLH 332 (368)
Q Consensus 327 AydA~G 332 (368)
-|+-+-
T Consensus 87 LY~y~~ 92 (132)
T PRK05685 87 LYDYMI 92 (132)
T ss_pred HHHHHH
Confidence 777543
No 165
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=65.48 E-value=74 Score=25.96 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 273 DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 273 d~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
-|.....+++.|+.++.+|+.|+|.+|..+.+.|...
T Consensus 38 Ap~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 38 APVELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999987654
No 166
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=65.09 E-value=48 Score=29.93 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC---------------hHHHHHHHHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR---------------PKEARIMYEK 343 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR---------------~~EAiaLYkk 343 (368)
..+..|..|...|.+|+|.+|+..++.=+.+=|.+-.+.. |..--++|+-...+ ..+|..-+++
T Consensus 46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY-a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~ 124 (142)
T PF13512_consen 46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY-AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ 124 (142)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH-HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence 3466789999999999999999999999999888887763 22223333333332 6789999999
Q ss_pred Hh-cCCCHHHHHHHHH
Q 017641 344 LQ-SHPNALVSKRARQ 358 (368)
Q Consensus 344 L~-sHP~~eVrKQAkr 358 (368)
|. .+|+-+-...|++
T Consensus 125 lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 125 LVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHCcCChhHHHHHh
Confidence 96 7999887777764
No 167
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.89 E-value=25 Score=33.88 Aligned_cols=80 Identities=24% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh--cccCccchHHHHHHHHHHHHhcCCh
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK--MVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~--v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
+.+.++.-+-.++.+.|..++..+ .+..++..+..|+|.+|+..|..+.+. .+..-.+=|.+. =+.|+.
T Consensus 105 ~d~A~aqL~~~l~~t~De~lk~l~--~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDil-------l~kg~k 175 (207)
T COG2976 105 LDKAEAQLKQALAQTKDENLKALA--ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDIL-------LAKGDK 175 (207)
T ss_pred HHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHH-------HHcCch
Confidence 334444444445555555555554 233455666666666666666655443 333334444443 355777
Q ss_pred HHHHHHHHHHh
Q 017641 335 KEARIMYEKLQ 345 (368)
Q Consensus 335 ~EAiaLYkkL~ 345 (368)
++|++=|++=.
T Consensus 176 ~~Ar~ay~kAl 186 (207)
T COG2976 176 QEARAAYEKAL 186 (207)
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 168
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=64.40 E-value=6.5 Score=31.26 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.2
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhhcc
Q 017641 341 YEKLQSHPNALVSKRARQFMFSFQVY 366 (368)
Q Consensus 341 YkkL~sHP~~eVrKQAkrLlyiLEAm 366 (368)
-.+|++|++++|++.|+.|+-.+..+
T Consensus 47 v~~Lrkh~~~~I~~~A~~Li~~WK~~ 72 (75)
T smart00509 47 VNGLRKHKNEEIRKLAKKLIKSWKKL 72 (75)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999877543
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.00 E-value=22 Score=35.52 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=26.3
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHH
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC 327 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA 327 (368)
|..+|+.|+|.+|+..+++-++.++.+..--..|+--.+.+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 66677777777777777777777776665555555444433
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=63.96 E-value=17 Score=36.22 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCc-cchHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-ELHGLAA 321 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-~LGGeaq 321 (368)
=+-.|..+|..|++..|+..|..|..+.+.+- .++|.+.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~ae 198 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAE 198 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45569999999999999999999999999987 4555444
No 171
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=63.35 E-value=12 Score=32.86 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 318 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG 318 (368)
.-+-+..+.|..++.+|++.+|+.+|=.|+..++..+.|=+
T Consensus 61 ~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 61 RFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34667889999999999999999999999998888776544
No 172
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=62.65 E-value=47 Score=30.30 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=42.7
Q ss_pred hhcCCcCChhhHH-HHHHHHHHHHHHHhcC-chhhhhHHHHHHHhhcccCccchH
Q 017641 266 KSVGLNVDPKLKS-ECEKALKDGDSLMDSG-KLKEALPFYEKVMNKMVFKSELHG 318 (368)
Q Consensus 266 k~~Gl~Vd~~~~~-e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v~~~S~LGG 318 (368)
...+...|++..+ -+-+..+.|..++.+| ++.+|+.+|=+|+..++....|=+
T Consensus 75 ~~~p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~ 129 (148)
T TIGR00985 75 AKAPDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLS 129 (148)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566666776544 4778999999999999 999999999999988888776644
No 173
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=62.63 E-value=39 Score=35.30 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc---------chHHHHHH-HHHHH
Q 017641 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---------LHGLAALQ-WSICQ 328 (368)
Q Consensus 259 e~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---------LGGeaqLw-LAiAy 328 (368)
..|..-.++.|+.+ +..+..|+-++-.|+.|.|..|-.+|=--..+++..-+ |..|+-++ |-.|+
T Consensus 113 ~~l~~L~e~ynf~~-----e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~ 187 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTP-----ERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGAL 187 (432)
T ss_pred HHHHHHHHhcCCCH-----HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444454433 46677999999999999999999998887777776655 34555554 89999
Q ss_pred HhcCChHHHHH
Q 017641 329 DSLHRPKEARI 339 (368)
Q Consensus 329 dA~GR~~EAia 339 (368)
|-++|..|-|+
T Consensus 188 edL~rLre~ID 198 (432)
T KOG2758|consen 188 EDLTRLREYID 198 (432)
T ss_pred HHHHHHHHHHc
Confidence 99999877654
No 174
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.56 E-value=19 Score=29.39 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
.+..|+.+..++..|+|.+|++.|..++..-.- --.|.+.--+..+.+.+|..+
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~--~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRD--YEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT--CCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--ccccHHHHHHHHHHHHcCCCC
Confidence 357788888888888888888887776655321 223455544555566666543
No 175
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=61.85 E-value=8 Score=30.57 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhhcc
Q 017641 341 YEKLQSHPNALVSKRARQFMFSFQVY 366 (368)
Q Consensus 341 YkkL~sHP~~eVrKQAkrLlyiLEAm 366 (368)
-.+|++|++++|++.|+.|+-.+...
T Consensus 49 V~~Lrkh~~~~i~~~A~~Lv~~Wk~~ 74 (76)
T cd00183 49 VNSLRKHSNEKIRKLAKALIKSWKKL 74 (76)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999877653
No 176
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.74 E-value=36 Score=37.13 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
+..|..|-.+-..|.+.+|++.|-+.-..+-- ..+|-.|+|..|+.+-....||.+|-|..+
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~n----n~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLN----NAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 34556666666677777777777664333321 257888999999999999999999998864
No 177
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.43 E-value=37 Score=27.74 Aligned_cols=62 Identities=11% Similarity=-0.050 Sum_probs=41.6
Q ss_pred hhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH-HHHhhhhhc
Q 017641 299 ALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA-RQFMFSFQV 365 (368)
Q Consensus 299 AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA-krLlyiLEA 365 (368)
.+..|+++++.-|-.. .+.+.||.+|=+.|+.++|++.+=.|. .|+..+= -.| +.|+=+|++
T Consensus 7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~-~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRDYED-DAARKRLLDIFEL 70 (90)
T ss_dssp HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc-cHHHHHHHHHHHH
Confidence 3566777777655543 899999999999999999999998885 5665521 122 345555554
No 178
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=61.09 E-value=47 Score=36.43 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=75.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCChh-----hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHH
Q 017641 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 320 (368)
Q Consensus 246 teEEkaar~~rtke~LaaYrk~~Gl~Vd~~-----~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea 320 (368)
+-|.....+...+-.+.+++...-+.+.+. +.+-..-.....+.+|..++|++-++.++.++++-+|++.+=+
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~-- 282 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP-- 282 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH--
Confidence 344444444455555667777777777762 2233344566799999999999999999999999999998743
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 017641 321 ALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS 353 (368)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr 353 (368)
+.++ ||--+|...+=.-|=-+|. .||+..|+
T Consensus 283 -~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 283 -LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred -HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcc
Confidence 5566 7777788777777777775 68887665
No 179
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=60.95 E-value=14 Score=29.43 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
..+...++.|...-..|+|.+|+.+|..+++.+
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777776653
No 180
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.87 E-value=20 Score=37.80 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS 314 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S 314 (368)
..+..-+.+-+|+.++ ......+.++|..+..+|..++|.+|++.-..|++.+.+.+
T Consensus 497 ~~a~~lE~~Iqy~nRf-----r~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~ 553 (569)
T PRK04778 497 ENATLTEQLIQYANRY-----RSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEPGV 553 (569)
T ss_pred HHHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcH
Confidence 3444555566776665 44568888999999999999999999999999999998875
No 181
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.26 E-value=28 Score=33.57 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHH
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~e 351 (368)
+..-.-..|..++..++.|+|..|+..|..++.. +..+.|.-.+.+-||-.+=..|..++|+.+-...+-|--..
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~ 159 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA 159 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH
Confidence 4444556788899999999999999999998865 44578999999999999999999999999999888775443
No 182
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.22 E-value=56 Score=33.00 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC--ChHHHHHHHHHHhcCCC
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH--RPKEARIMYEKLQSHPN 349 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G--R~~EAiaLYkkL~sHP~ 349 (368)
...-.+..+.....+|+++.|.+|...|+...+.++..-+ =..--.++.||++=. ++++|...-+++..+..
T Consensus 127 ~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~ 200 (379)
T PF09670_consen 127 YEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDK 200 (379)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Confidence 3344466788899999999999999999998876443333 123345778888855 57889888888876543
No 183
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=59.68 E-value=14 Score=30.13 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 319 LAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
..-+..|+-+|..||.+|||..|+.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~ 31 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKK 31 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456678899999999999999985
No 184
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=58.49 E-value=26 Score=31.54 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCcCChh-----hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc-----cCccchHHHHHHHHHHHH
Q 017641 260 LLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQD 329 (368)
Q Consensus 260 ~LaaYrk~~Gl~Vd~~-----~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAyd 329 (368)
.+.+|+..+=.+-.|. +.+-|-..+..++.+|++|++.+..+++-+|.+.+. .+-+=||++.-.|---|+
T Consensus 6 ~~~aY~qn~V~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~ 85 (132)
T COG1516 6 AYQAYQQNQVNTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYD 85 (132)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHH
Confidence 4567776633333343 248899999999999999999999999999988764 455678999888877776
Q ss_pred hc
Q 017641 330 SL 331 (368)
Q Consensus 330 A~ 331 (368)
=+
T Consensus 86 y~ 87 (132)
T COG1516 86 YM 87 (132)
T ss_pred HH
Confidence 43
No 185
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=58.40 E-value=65 Score=29.50 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=42.0
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccC-----ccchHHHHHHHHHH------HHhcCChHHHH---------------
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFK-----SELHGLAALQWSIC------QDSLHRPKEAR--------------- 338 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-----S~LGGeaqLwLAiA------ydA~GR~~EAi--------------- 338 (368)
-.|..+|..+..-.|+-+|.+|+.++-.- -.+--...||.+.| +.+.|+.+-.+
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiP 85 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIP 85 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhcc
Confidence 34666677777777777777765443222 23334445553333 34555533211
Q ss_pred -------------------HHHHHHhcCCCHHHHHHHHH
Q 017641 339 -------------------IMYEKLQSHPNALVSKRARQ 358 (368)
Q Consensus 339 -------------------aLYkkL~sHP~~eVrKQAkr 358 (368)
+|-.=|++||||+|-++-+.
T Consensus 86 QCp~~~C~afi~sLGCCk~ALl~F~KRHPNP~iA~~vq~ 124 (140)
T PF10952_consen 86 QCPNTECEAFIDSLGCCKKALLDFMKRHPNPEIARLVQH 124 (140)
T ss_pred CCCCcchHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHh
Confidence 24445789999999887654
No 186
>PLN03077 Protein ECB2; Provisional
Probab=58.10 E-value=96 Score=33.64 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=42.0
Q ss_pred HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 017641 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 349 (368)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 349 (368)
.-..|.+.+|..+|+...+.-+..-.+ +.--.++.+|-..|+.+||..+++++...|+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~--~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNL--KHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 456799999999999877443332222 4556678889999999999999998643333
No 187
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.05 E-value=66 Score=35.00 Aligned_cols=43 Identities=9% Similarity=-0.016 Sum_probs=35.1
Q ss_pred HHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 304 EKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 304 EkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
...+.+++....--+..+.|++-++++.|+.++|..+|+++..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3445556665555788999999999999999999999999954
No 188
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.62 E-value=20 Score=28.02 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
..+...++.|...=..|.|.+|+.+|..|++.+-.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45566677777777888888888888888776543
No 189
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=56.40 E-value=22 Score=27.44 Aligned_cols=35 Identities=17% Similarity=0.391 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
..+.+.+..|..+=..|+|.+|+.+|..|++.+-.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34445566666666779999999999888776543
No 190
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.31 E-value=15 Score=32.83 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (368)
+..++.++.+++.|+|+-|.+++..++..=+-+. ++.--+|-||+++|...+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~----~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNE----EARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 4578889999999999999999999887555443 477777888888776544
No 191
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=55.22 E-value=36 Score=36.86 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
....+.-+-..|+.++||.+|...|...+..+.++ |.-+|..||=.+++..|++++-.+-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~--IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN--IRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh--HHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34567777788999999999999999999888887 8889999999999999999886664
No 192
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=54.63 E-value=59 Score=30.17 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
.+.+..-++-++.+...|.|..|..++..+...-...+.+.-.+.+..|-.+-+-|++.+|+.+-+.+..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555667888999999999999999999999888777777888999999999999999999998887765
No 193
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=54.26 E-value=27 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
...+.|..+=+.|+|.+|+.+|..+++.+
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44555556666777777777777766543
No 194
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.09 E-value=25 Score=37.23 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhc-CchhhhhHHHHHHHhhcccCc
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS-GKLKEALPFYEKVMNKMVFKS 314 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Amer-GkYr~AV~~lEkA~~~v~~~S 314 (368)
..+..-+.|-.|-.++ .....++.+++..+..+|.+ |+|.+|++.-..|++.|.+.+
T Consensus 493 ~~A~L~E~~iQYaNRY-----R~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~ 550 (560)
T PF06160_consen 493 DNATLAEQLIQYANRY-----RSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGA 550 (560)
T ss_pred HHHHHHHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCH
Confidence 3445555566665555 22346788899999999999 999999999999999998875
No 195
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.00 E-value=1.7e+02 Score=28.49 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----------ccchHHHHHHHH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----------SELHGLAALQWS 325 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----------S~LGGeaqLwLA 325 (368)
.....|...-++.|++++++....+-. .-.|.++.++..+|+....+... +...-...+.++
T Consensus 171 ~l~~~l~~~~~~~g~~i~~~al~~l~~--------~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~ 242 (367)
T PRK14970 171 DIKEHLAGIAVKEGIKFEDDALHIIAQ--------KADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVT 242 (367)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 355566666667899999886665433 24489999999999987554322 011112222232
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 017641 326 ICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 326 iAydA~GR~~EAiaLYkkL~ 345 (368)
-|. ..|+..+|+.+|+.|.
T Consensus 243 ~ai-~~~~~~~a~~~~~~l~ 261 (367)
T PRK14970 243 DLI-LENKIPELLLAFNEIL 261 (367)
T ss_pred HHH-HcCCHHHHHHHHHHHH
Confidence 222 3478999999999984
No 196
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.73 E-value=29 Score=36.41 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccCcc---------------------------chHHHHHHH--HHHHHhcCChH
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---------------------------LHGLAALQW--SICQDSLHRPK 335 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---------------------------LGGeaqLwL--AiAydA~GR~~ 335 (368)
+.|+-++.-|+|++|-+.|..+++.-+..-. +-++|.+-+ |-.||++++.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 5688999999999999888877654332211 114444443 44577788888
Q ss_pred HHHHHHHHH-hcCCC
Q 017641 336 EARIMYEKL-QSHPN 349 (368)
Q Consensus 336 EAiaLYkkL-~sHP~ 349 (368)
+|..+|+.. .-||+
T Consensus 308 ~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPI 322 (478)
T ss_pred HHHHHHHHHHhcCCc
Confidence 888888765 35664
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=47 Score=35.48 Aligned_cols=71 Identities=24% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch----HHHHHHHHH-----HHHhcCChHHH-----HHHHHHH--h
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH----GLAALQWSI-----CQDSLHRPKEA-----RIMYEKL--Q 345 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG----GeaqLwLAi-----AydA~GR~~EA-----iaLYkkL--~ 345 (368)
..+..|.-.+.-+++.+||+.|++||+.-.- -.. +++++-|-+ =|-.+|=...| ..-|++| .
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~ 400 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALV 400 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHH
Confidence 3567788889999999999999999987654 333 444443322 13344444444 6678877 5
Q ss_pred cCCCHHHHH
Q 017641 346 SHPNALVSK 354 (368)
Q Consensus 346 sHP~~eVrK 354 (368)
.||....-.
T Consensus 401 ~Hpd~~ags 409 (486)
T KOG0550|consen 401 HHPDKNAGS 409 (486)
T ss_pred hCCCcCcch
Confidence 899876543
No 198
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.55 E-value=31 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
..+.+.+..|..+=+.|.|.+|+.+|..|++.+-.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34444555566666678888888888877665543
No 199
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=50.39 E-value=28 Score=26.41 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH--------hcCCCHHHHHH
Q 017641 320 AALQWSICQDSLHRPKEARIMYEKL--------QSHPNALVSKR 355 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL--------~sHP~~eVrKQ 355 (368)
-.++-|+-+|..|+.++|+.+|++= +..++++.+..
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~ 50 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQA 50 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3466788999999999999999863 34466665443
No 200
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.36 E-value=86 Score=32.95 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=31.5
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC
Q 017641 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 313 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~ 313 (368)
.+-+-......+.|+.|-++|-.|++.+|+..|..++-.|++-
T Consensus 195 P~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~ 237 (422)
T PF06957_consen 195 PAIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLL 237 (422)
T ss_dssp BB----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC-
T ss_pred CcCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhee
Confidence 3334456777789999999999999999999999988775543
No 201
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=49.01 E-value=6.7 Score=41.57 Aligned_cols=27 Identities=48% Similarity=0.804 Sum_probs=22.9
Q ss_pred ccccccC-ccccccccCCCCCCccccCC
Q 017641 208 NLEFYKP-KVSTWGVFPRPGNISKTFGG 234 (368)
Q Consensus 208 ~~~~YKP-kVsTWGvFPRP~NISkayGG 234 (368)
+.+.|+= =++||||-|||.+|--.|||
T Consensus 382 n~~~y~e~C~~~~~v~prP~wi~t~fgg 409 (492)
T KOG2183|consen 382 NSESYQEGCMQTFGVTPRPKWITTEFGG 409 (492)
T ss_pred CHHHHHHHHHHhcCCCCCCcceehhhcc
Confidence 4556665 58999999999999999988
No 202
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=48.87 E-value=25 Score=28.25 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHH
Q 017641 320 AALQWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKR 355 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQ 355 (368)
-.+..|+-+|..|+.++|+.+|.+ |..-|+...+..
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~ 51 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKN 51 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 345667889999999999999975 445677666543
No 203
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=48.62 E-value=94 Score=26.22 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc-----cCccchHHHHHHHHHHHHhc
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAydA~ 331 (368)
.+.+-..++.+..+++.|++..+..++-+|.+.+. .+-+-||++.-.|.--|+-+
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~ 85 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYM 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH
Confidence 57788889999999999999999999999877653 45567899999988888764
No 204
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=48.39 E-value=30 Score=30.08 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-CChHHHHHHHHHHhcCCCHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQSHPNALVSKRA 356 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~sHP~~eVrKQA 356 (368)
+++.+.--.=..|+..|+++.+=.+|.+.+.. |+-+ .|-.+.+..--.|-+|||++||-+|
T Consensus 6 ~~Fae~~i~q~~A~~~~d~~~~Nr~~~k~~~~------------------~~eLk~r~gd~r~aLl~LL~hpn~~VRl~A 67 (106)
T PF09450_consen 6 ERFAEISIAQGEAIDRGDARTANRLYDKMIRI------------------YDELKSRGGDQRDALLPLLKHPNMQVRLWA 67 (106)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------------------HHHHHHSTT-GGGGGGGGGGSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH------------------HHHHHhcCcchHHHHHHHHcCCChhHHHHH
Confidence 33333334445678889999888888775432 2222 2333333444456678888888877
Q ss_pred HHHhhh
Q 017641 357 RQFMFS 362 (368)
Q Consensus 357 krLlyi 362 (368)
....-.
T Consensus 68 A~~~L~ 73 (106)
T PF09450_consen 68 AAHTLR 73 (106)
T ss_dssp HHTTTT
T ss_pred HHHHHH
Confidence 765433
No 205
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.37 E-value=40 Score=34.17 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=57.7
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhcCCcCChh--hH------------------HHHHHHH-----------HHHHHHH
Q 017641 243 VLETAEARAAKEERTRQLLAAYKKSVGLNVDPK--LK------------------SECEKAL-----------KDGDSLM 291 (368)
Q Consensus 243 ~lEteEEkaar~~rtke~LaaYrk~~Gl~Vd~~--~~------------------~e~eea~-----------~~Gk~Am 291 (368)
.|-.+=-++++..+..+.|..|-+-. .+||. +. .-|+.++ ..|..+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI--~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAI--ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH--hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34344456899999999999997655 55554 21 2233332 2388999
Q ss_pred hcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 292 erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
..|+|.+|++.|.+|+++=|-+- ..-=.|-+|-+.++...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne----~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNE----SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhcCCC
Confidence 99999999999999999887765 22222445555544433
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=48.29 E-value=27 Score=37.55 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (368)
.-|-+.-.+|.+++..|+|+..|.+|++|++.=.-.-..-.-|--||..||--++..+.|
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kA 74 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKA 74 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHH
Confidence 347788889999999999999999999998643222222223334455555555444444
No 207
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.26 E-value=21 Score=29.29 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 321 ALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
.|..|+++|-.|..++|+++|++=..
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 45668889999999999999998543
No 208
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=46.81 E-value=49 Score=35.66 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=52.9
Q ss_pred CcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--------------HHHHHHHHHHHHhcCChH
Q 017641 270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------------GLAALQWSICQDSLHRPK 335 (368)
Q Consensus 270 l~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--------------GeaqLwLAiAydA~GR~~ 335 (368)
+...|.+-.-++.+|+++..-|.+|.|..|.--|-.|+++|+-.--++ .-+.-.|++||=-+++.+
T Consensus 166 ~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpd 245 (569)
T PF15015_consen 166 FSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPD 245 (569)
T ss_pred cccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence 344566667788888888888888888888888888888876544333 335567999999999988
Q ss_pred HHHH
Q 017641 336 EARI 339 (368)
Q Consensus 336 EAia 339 (368)
-|+-
T Consensus 246 lALn 249 (569)
T PF15015_consen 246 LALN 249 (569)
T ss_pred hHHH
Confidence 8764
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=46.23 E-value=95 Score=35.76 Aligned_cols=61 Identities=26% Similarity=0.232 Sum_probs=46.5
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH-HHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ-WSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw-LAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (368)
|-.++..|++.+|+..||.. ...... -+-.|+ +..||+-++++++|..+|++.. ..|+.+.
T Consensus 50 aLsl~r~gk~~ea~~~Le~~-~~~~~~----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eel 112 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEAL-YGLKGT----DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEEL 112 (932)
T ss_pred HHHHHHhcCchhHHHHHhhh-ccCCCC----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHH
Confidence 66778899999999877764 333333 333444 7999999999999999999984 7898543
No 210
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.22 E-value=61 Score=36.54 Aligned_cols=121 Identities=9% Similarity=0.117 Sum_probs=88.0
Q ss_pred ccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCChhhHHH-HHHHHHHHHHHHhcCchhhh
Q 017641 221 VFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSE-CEKALKDGDSLMDSGKLKEA 299 (368)
Q Consensus 221 vFPRP~NISkayGGGR~IrpGe~lEteEEkaar~~rtke~LaaYrk~~Gl~Vd~~~~~e-~eea~~~Gk~AmerGkYr~A 299 (368)
+|-|-.||++----|-+|+ -+-.++...++|+.+..++.. +|..+..+...- -.-....+...|+--+|-.|
T Consensus 301 ~~~~~~~~~~g~~~~sr~l-----~~~~~~L~~dE~I~e~F~~~~--t~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s 373 (872)
T KOG4814|consen 301 LNSKNDSKFLGKAICSRFL-----ITTQSKLMNDEEIAESFENFS--TQMELTKEAISCIHTLLWNTAKKLFKMEKYVVS 373 (872)
T ss_pred HhhhcccchhhhhhhhHHH-----HHHHHHHhhHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555322233333 356677888889999988885 555555554422 22345778999999999999
Q ss_pred hHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 017641 300 LPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (368)
Q Consensus 300 V~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (368)
+++|+.-|..++-.- +.=...|=.|+.||=.+.+.|.|...|+.-.+|-
T Consensus 374 ~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 374 IRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 999999988876542 2227788889999999999999999999998887
No 211
>PF15469 Sec5: Exocyst complex component Sec5
Probab=46.10 E-value=1.9e+02 Score=25.73 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHH
Q 017641 249 ARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ 328 (368)
Q Consensus 249 Ekaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy 328 (368)
+++.+-+.+...|.+|+.=..| |. .=..++.+|.|..+|..|.+|..+....-.--.-.+--|.-|-
T Consensus 68 ~k~~~l~~~l~~l~r~~flF~L---P~----------~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve 134 (182)
T PF15469_consen 68 EKADKLRNALEFLQRNRFLFNL---PS----------NLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVE 134 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---HH----------HHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455555555666555432211 11 1234578999999999999998877654321122222234444
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 017641 329 DSLHRPKEARIMYEKLQSHP 348 (368)
Q Consensus 329 dA~GR~~EAiaLYkkL~sHP 348 (368)
.-+.+.. ..|+++|...|
T Consensus 135 ~ii~~~r--~~l~~~L~~~~ 152 (182)
T PF15469_consen 135 KIIEEFR--EKLWEKLLSPP 152 (182)
T ss_pred HHHHHHH--HHHHHHHhCCC
Confidence 4443333 37888887655
No 212
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.88 E-value=28 Score=36.17 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-----hcCCCHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-----QSHPNALVS 353 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-----~sHP~~eVr 353 (368)
....|-.+|.-|+|.+||+-|..|++--.+++. ++..+|.|+=.-++.+.|+.+-..+ +.||--.|-
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIG 218 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIG 218 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcc
Confidence 445677889999999999999999998877775 5678899999999999999877665 469976654
No 213
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=45.44 E-value=46 Score=29.72 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcC------Ch----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhh
Q 017641 318 GLAALQWSICQDSLH------RP----KEARIMYEKLQSHPNALVSKRARQFMFSFQ 364 (368)
Q Consensus 318 GeaqLwLAiAydA~G------R~----~EAiaLYkkL~sHP~~eVrKQAkrLlyiLE 364 (368)
-.+..|+..+.+..+ .. +....+-.++...++++||+.|++++..|.
T Consensus 149 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 149 EECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 456678888888888 11 456666677779999999999999998874
No 214
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=45.41 E-value=3.3e+02 Score=27.24 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=54.5
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCHHHHHHH
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNALVSKRA 356 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~eVrKQA 356 (368)
+....+...|.++.++++++.-...=++... +..++--+|...|+...||..|++|.+ -|.+++++.=
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3477888999999999999998887777764 455666789999999999999999986 4666665543
No 215
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.72 E-value=36 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 017641 322 LQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk 343 (368)
+..|+.+|-.|+.++|+.+|.+
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~ 33 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKK 33 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4567889999999999999976
No 216
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=44.47 E-value=1e+02 Score=32.31 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=64.4
Q ss_pred cCCcCChhh--HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 268 VGLNVDPKL--KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 268 ~Gl~Vd~~~--~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
++|.-.|.+ ....-..++.|+-+|..|-|+.|-..|..-++.= ++-=.+-=+|...|++....+.||..-++|.
T Consensus 93 Q~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 93 QTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444443 3444567888999999999999999998866642 2333445567888999999999999999999
Q ss_pred cCCCHHHHHHHHHH
Q 017641 346 SHPNALVSKRARQF 359 (368)
Q Consensus 346 sHP~~eVrKQAkrL 359 (368)
+|--..-+.+-.|+
T Consensus 169 k~~~q~~~~eIAqf 182 (389)
T COG2956 169 KLGGQTYRVEIAQF 182 (389)
T ss_pred HcCCccchhHHHHH
Confidence 88776666555544
No 217
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.42 E-value=33 Score=27.92 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
.+...++.|-..=+.|.|.+|+++|..|++++-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 4445556666666789999999999999988766
No 218
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=43.77 E-value=52 Score=29.52 Aligned_cols=70 Identities=24% Similarity=0.344 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhh--------cCCcCChhh----HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 245 ETAEARAAKEERTRQLLAAYKKS--------VGLNVDPKL----KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 245 EteEEkaar~~rtke~LaaYrk~--------~Gl~Vd~~~----~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
.+-.++..-.+...++|.+-+.. +|.+|+--+ +......++.+..+++.|+|.+|...|..|++-+.+
T Consensus 70 ~~~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~lv~ 149 (155)
T PF10938_consen 70 VPTPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDGLVF 149 (155)
T ss_dssp ---HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-EE
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCeEE
Confidence 34556666666777777766554 455555443 688899999999999999999999999999876655
Q ss_pred Cc
Q 017641 313 KS 314 (368)
Q Consensus 313 ~S 314 (368)
-|
T Consensus 150 ~s 151 (155)
T PF10938_consen 150 DS 151 (155)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 219
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.61 E-value=1.1e+02 Score=33.60 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=75.0
Q ss_pred CcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh--cC
Q 017641 270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SH 347 (368)
Q Consensus 270 l~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sH 347 (368)
-+||.+++-.++..+=.|--.|-.|.+-.|-+.|.+|+.+-+..-.| -|-++.+|--..++++-+.-+.+-. ..
T Consensus 316 n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l----yI~~a~~y~d~~~~~~~~~~F~~A~~ldp 391 (606)
T KOG0547|consen 316 NEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL----YIKRAAAYADENQSEKMWKDFNKAEDLDP 391 (606)
T ss_pred cccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH----HHHHHHHHhhhhccHHHHHHHHHHHhcCC
Confidence 38999999999999999999999999999999999999988777666 5666777777777777777666654 35
Q ss_pred CCHHHHHHHHHHhhhhh
Q 017641 348 PNALVSKRARQFMFSFQ 364 (368)
Q Consensus 348 P~~eVrKQAkrLlyiLE 364 (368)
-|+.|=-+=-||+|+|+
T Consensus 392 ~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred CCCchhHhHHHHHHHHH
Confidence 57788888888888886
No 220
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.56 E-value=42 Score=27.16 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
+.+..+.+..+=..|+|.+|+.+|..|++.+
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3444555666667888888888888887765
No 221
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.48 E-value=68 Score=35.50 Aligned_cols=109 Identities=22% Similarity=0.267 Sum_probs=56.7
Q ss_pred CCCCccccCCCcccCCCCccCcHHHH---------------------HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHH
Q 017641 225 PGNISKTFGGGRTIRPGDVLETAEAR---------------------AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKA 283 (368)
Q Consensus 225 P~NISkayGGGR~IrpGe~lEteEEk---------------------aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea 283 (368)
|++--==||=|-+..-=|.+|.+|=- ..+-+++.+.|.=|.+-. .+||+.--- .
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~--~ld~kn~l~---~ 560 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI--HLDPKNPLC---K 560 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH--hcCCCCchh---H
Confidence 34444457777666554555554421 223444455555554333 444443222 4
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHH
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYE 342 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYk 342 (368)
|..|..+|.-|+|.+|+.-||...+.++..+-++-. ++-.|--+|+.+.|+--|-
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l----lgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFAL----LGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH----HHHHHHHHccchHHHHhhH
Confidence 566666666666666666666666666665544322 2334555555555554443
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=43.23 E-value=56 Score=34.74 Aligned_cols=86 Identities=9% Similarity=0.101 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
.+..+..+.|+.|++-+ .++|..-+....-|..|-.+...|++.+|+.+|++|+++. +..+. .|.-.-.++.+
T Consensus 86 ~~lGryeEAIa~f~rAL--eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f~---~i~~DpdL~pl 158 (453)
T PLN03098 86 FSKGRVKDALAQFETAL--ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKFS---TILNDPDLAPF 158 (453)
T ss_pred HHcCCHHHHHHHHHHHH--hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhHH---HHHhCcchhhh
Confidence 45567888999998555 5666654333446889999999999999999999999972 11111 11122234455
Q ss_pred CChHHHHHHHHHH
Q 017641 332 HRPKEARIMYEKL 344 (368)
Q Consensus 332 GR~~EAiaLYkkL 344 (368)
.+..+...|.+-+
T Consensus 159 R~~pef~eLlee~ 171 (453)
T PLN03098 159 RASPEFKELQEEA 171 (453)
T ss_pred cccHHHHHHHHHH
Confidence 5555665555544
No 223
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=43.22 E-value=1.4e+02 Score=33.82 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (368)
..+...+|-+.+-|===|-+.+.+-+-|..--.-++.-++..|-.+||+|++.|| ...---+.|.+|--=|-.|--.-
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 4456677777666666666777887777777777788899999999999999998 45556677888888888899999
Q ss_pred HHHHHHHHhc
Q 017641 337 ARIMYEKLQS 346 (368)
Q Consensus 337 AiaLYkkL~s 346 (368)
||++|++-.+
T Consensus 605 amsiyerat~ 614 (835)
T KOG2047|consen 605 AMSIYERATS 614 (835)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 224
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=41.63 E-value=41 Score=20.51 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=19.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhc
Q 017641 324 WSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~s 346 (368)
+..+|-..|+.++|..+|+++..
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999974
No 225
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=41.29 E-value=67 Score=31.93 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHh-hcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMN-KMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~-~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+.+...+...+++.|.+.+|+..|+..+. .-....++.. +|-+|-.++..|+.+=|+.+|+.|.
T Consensus 213 ~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~--rL~~A~l~~~~g~~~lA~~ll~~L~ 277 (301)
T TIGR03362 213 WEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHW--RLLLARLLEQAGKAELAQQLYAALD 277 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455677888889999999998887543 3333444432 3445666788899999999999884
No 226
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.81 E-value=1.1e+02 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHHH
Q 017641 322 LQWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRARQ 358 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAkr 358 (368)
+..|+-.|..|+.++|+.+|.+ ++.-|++..+..-++
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~ 54 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRA 54 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3446789999999999999976 335577766554433
No 227
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=40.78 E-value=25 Score=25.58 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=17.6
Q ss_pred HHHhcC-CCHHHHHHHHHHhhhhh
Q 017641 342 EKLQSH-PNALVSKRARQFMFSFQ 364 (368)
Q Consensus 342 kkL~sH-P~~eVrKQAkrLlyiLE 364 (368)
..|..| ++++|++.|++|+=-+.
T Consensus 26 ~~l~k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 26 NKLRKHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHh
Confidence 367788 99999999999975443
No 228
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.30 E-value=1.9e+02 Score=28.23 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
..|.+.+++|-+-..-+--|. .-+--..++.+-.+|+.|.|.+-..-.|. +....+.+--.+.=-|..+-=..|++
T Consensus 108 gdta~AV~aFdeia~dt~~P~-~~rd~ARlraa~lLvD~gsy~dV~srvep---La~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 108 GDTAAAVAAFDEIAADTSIPQ-IGRDLARLRAAYLLVDNGSYDDVSSRVEP---LAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred ccHHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHHHhccccHHHHHHHhhh---ccCCCChhHHHHHHHHhHHHHhccch
Confidence 344555555543222222222 22233567778888899988887666554 33333433333444445555567999
Q ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHhhh
Q 017641 335 KEARIMYEKLQ--SHPNALVSKRARQFMFS 362 (368)
Q Consensus 335 ~EAiaLYkkL~--sHP~~eVrKQAkrLlyi 362 (368)
..|..++.+|. ..-...||..|+-||--
T Consensus 184 a~A~~~F~qia~Da~aprnirqRAq~mldl 213 (221)
T COG4649 184 AKAKSWFVQIANDAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHHHHHHHccccCcHHHHHHHHHHHHH
Confidence 99999999997 45667899999887643
No 229
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=39.49 E-value=1.2e+02 Score=26.88 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHHHHhcCChHHHH-HHHHHHhcCCCHHHHHHHHHHhhhh
Q 017641 324 WSICQDSLHRPKEAR-IMYEKLQSHPNALVSKRARQFMFSF 363 (368)
Q Consensus 324 LAiAydA~GR~~EAi-aLYkkL~sHP~~eVrKQAkrLlyiL 363 (368)
+-.|++.-.=+||.. .||+|+..||+.+-..++=+||+++
T Consensus 52 ~~~~~~~~~LrDEiy~QLiKQtt~Np~~~s~~rgW~Ll~l~ 92 (144)
T smart00139 52 LQKGLAHPELRDEIYCQLIKQLTDNPSRQSEERGWELLYLC 92 (144)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 344555555566654 4899999999999999998888765
No 230
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.39 E-value=25 Score=38.48 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=47.3
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccC---ccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFK---SELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN 349 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~---S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~ 349 (368)
.|.-+|..+.|.+|+.+|++|+.-+.-. +..=--+...|.-+|--+++.+|||.-|++- ...|.
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 4888999999999999999998333211 1111223666888999999999999999985 34443
No 231
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.84 E-value=1.1e+02 Score=33.29 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQ 358 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkr 358 (368)
..+..|+..=+-+++.+|..+||+-++-...-+..+ =++.+|||+=+-.++..++|-.-|.++-.- ...+..|++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~ 545 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHH
Confidence 345667777788899999999999655443333333 478899999988999999998777766544 334455655
Q ss_pred Hh
Q 017641 359 FM 360 (368)
Q Consensus 359 Ll 360 (368)
|+
T Consensus 546 Ll 547 (559)
T KOG1155|consen 546 LL 547 (559)
T ss_pred HH
Confidence 53
No 232
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=38.74 E-value=1.1e+02 Score=24.38 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHHH
Q 017641 322 LQWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRARQ 358 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAkr 358 (368)
+..|+-.|..|+.++|+.+|.+ |..-+++..+..-++
T Consensus 10 v~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~ 54 (75)
T cd02684 10 VVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQ 54 (75)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3456889999999999999976 445677776654443
No 233
>PLN02789 farnesyltranstransferase
Probab=38.60 E-value=1.3e+02 Score=29.81 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHHHhcC-chhhhhHHHHHHHhhcccCccchHHHHHHH--HHHHHhcCCh--HHHHHHHHHH-hcCC
Q 017641 287 GDSLMDSG-KLKEALPFYEKVMNKMVFKSELHGLAALQW--SICQDSLHRP--KEARIMYEKL-QSHP 348 (368)
Q Consensus 287 Gk~AmerG-kYr~AV~~lEkA~~~v~~~S~LGGeaqLwL--AiAydA~GR~--~EAiaLYkkL-~sHP 348 (368)
|..+...| .|.+++.++++|+..-+-+. ++|- ..+++.+|+. ++++.+|+++ ..+|
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDA 139 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc
Confidence 55555555 45666666666665544332 2343 4455666653 5566666443 3444
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=38.56 E-value=1.3e+02 Score=28.60 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHH-HHHHHHHHHHhcCchhhhhHHHHHHHh
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECE-KALKDGDSLMDSGKLKEALPFYEKVMN 308 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~e-ea~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (368)
|-+.+.+.|..--+..+-.++++....+. -..+.|...|+.++|.+|..+|+-++.
T Consensus 218 ~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 218 KIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 34445555555555577788888766665 456889999999999999999998764
No 235
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.38 E-value=54 Score=35.86 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=52.4
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHHHHHHHHH
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALVSKRARQF 359 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eVrKQAkrL 359 (368)
.|..+|-.|.|..|.++|..|+..=. ---++-+.....|+++|+.+||+..+=+|- -.-+.+|--|-..+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda----sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA----SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch----HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 47788999999999999999876432 234667777888999999999999998884 34455555444443
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=38.21 E-value=79 Score=32.76 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh-------HHHHHHHHHHhcC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP-------KEARIMYEKLQSH 347 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~-------~EAiaLYkkL~sH 347 (368)
.|+.|-.+|-.++|++|..+|..-.+.-. --.+--....|.||..+|+. ++|..++++.-.+
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~---WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKESK---WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 67889999999999999999988766322 23788888999999999999 9999999988543
No 237
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.17 E-value=49 Score=26.83 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 319 LAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
--....|+-+|..|+.+||+.+|+.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~ 31 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKE 31 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3445678999999999999999985
No 238
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.00 E-value=43 Score=20.30 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=19.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC
Q 017641 324 WSICQDSLHRPKEARIMYEKLQSH 347 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~sH 347 (368)
+..+|=..|+.++|..+|+++..+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHhHC
Confidence 445788889999999999998753
No 239
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.88 E-value=1.7e+02 Score=28.80 Aligned_cols=86 Identities=28% Similarity=0.263 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCcCC--hhhHHHHHHHHHHHHHHH-------hcCchhhhhHHHHHHHhhcccCccchHHHHHHHHH
Q 017641 256 RTRQLLAAYKKSVGLNVD--PKLKSECEKALKDGDSLM-------DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI 326 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd--~~~~~e~eea~~~Gk~Am-------erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAi 326 (368)
-..+.+..|+....+.-+ .+..---+-++-.+..++ +...+=+|+-.||.++.. |.-.=.+.|||+.
T Consensus 150 ~~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~----s~~n~~~~LlLvr 225 (365)
T PF09797_consen 150 LAQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKK----SPHNYQLKLLLVR 225 (365)
T ss_pred HHHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHc----CCCcHHHHHHHHH
Confidence 567888999887766522 122111122333344444 366677788888887665 5555678999999
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 017641 327 CQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 327 AydA~GR~~EAiaLYkkL~ 345 (368)
.|--+|-...|+.+|..|.
T Consensus 226 lY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 226 LYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHcCCHHHHHHHHHhcC
Confidence 9999999999999999873
No 240
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.53 E-value=44 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
...|..-+++++|.+|+.=|++++++
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45788999999999999999998765
No 241
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.44 E-value=1.8e+02 Score=26.85 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhc---ccCc-----cchHHHHHHHHHHHHhcCChHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKM---VFKS-----ELHGLAALQWSICQDSLHRPKEARIM 340 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v---~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaL 340 (368)
.+|.+|+.-+.-|-|.+|...+-+||+.. |.-- -+-+..--||+-|+--+||.+||+.-
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~s 77 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQS 77 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 57888999999999999999999998853 2222 23467778999999999999999753
No 242
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=37.18 E-value=56 Score=26.24 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
+.+.++.+..+=..|+|.+|+.+|..+++.+
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3445566667777899999999999988764
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=37.11 E-value=2.3e+02 Score=29.38 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=36.9
Q ss_pred CchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh---cCChHHHHHHHHH-Hh--cCCCHH
Q 017641 294 GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS---LHRPKEARIMYEK-LQ--SHPNAL 351 (368)
Q Consensus 294 GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA---~GR~~EAiaLYkk-L~--sHP~~e 351 (368)
-.|..=|.+.|..-.+-..+-.-+..|+.++|-|+-- .|.+++|+.++.+ |. ..++++
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 3455555555554333223333477888888888888 8888888888888 54 345555
No 244
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=36.12 E-value=92 Score=31.46 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhhhhc
Q 017641 328 QDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQV 365 (368)
Q Consensus 328 ydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEA 365 (368)
++.+--+.=.+.++..|..||+.+|++.|+-||=++.+
T Consensus 39 ~ell~~Tr~g~~vn~~~Kk~~n~ev~~~ak~Lik~Wkk 76 (296)
T KOG1105|consen 39 LELLQETRTGMGVNEVLKKHKNEEVRSLAKKLIKSWKK 76 (296)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 44455556677889899999999999999999977764
No 245
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=35.67 E-value=72 Score=24.94 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc--------ccC-ccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM--------VFK-SELHGLAALQWSICQDSLHRPKEARIMYEKLQ- 345 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v--------~~~-S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~- 345 (368)
....++.-|+.++.+++.|.|..|+-+...|+.+. ... ...|+...|.- .+....+...+-....+.|.
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~lkAll~~~~~~~~~~h~l~~l~~-~l~~~~~~~~~~~~~l~~L~~ 82 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKALKALLLKKGGRYPKHHSLIKLFS-ELKEYNPESPELAECLKRLEK 82 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTTS--STSSCHHHHHH-HHHTTSCGGHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcHHHHHH-HHHHhhhhhHHHHHHHHHHHH
Confidence 45778899999999999999999888887776553 111 23444444443 33344433566666666664
Q ss_pred -----cCCCHH---HHHHHHHHhhh
Q 017641 346 -----SHPNAL---VSKRARQFMFS 362 (368)
Q Consensus 346 -----sHP~~e---VrKQAkrLlyi 362 (368)
++|... .+.+|++++-.
T Consensus 83 ~~~~~rY~~~~~~~~~~~a~~~i~~ 107 (118)
T PF05168_consen 83 FRIDARYPDEDEFYSEEEAEEAIEK 107 (118)
T ss_dssp TSCTTTCGGGSSTCHHHHHHHHHHH
T ss_pred hHHhccCCCCCCCCCHHHHHHHHHH
Confidence 233333 35556555543
No 246
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=35.58 E-value=1.3e+02 Score=29.61 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
.+-.++..|.-|+.-+|.+.||+.++.-+-.-.-+|. |-++-+|-+.|+..+|.+-++++.+
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4455677888888888888888887765432222222 2235555555555555555555543
No 247
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=35.45 E-value=3.8e+02 Score=25.84 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-----------HHHHH
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAAL 322 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqL 322 (368)
.......|..+-+..|+.++++.....-+.+. |.+..+..-+||..-.+.....+. .+..+
T Consensus 144 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g--------~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~i 215 (343)
T PRK06585 144 ERDLARLIDDELAEAGLRITPDARALLVALLG--------GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSL 215 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccH
Confidence 45667778888999999999987655443332 666677777777655544333332 11222
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHh---cCCCHH---HHHHHHHH
Q 017641 323 Q-WSICQDSLHRPKEARIMYEKLQ---SHPNAL---VSKRARQF 359 (368)
Q Consensus 323 w-LAiAydA~GR~~EAiaLYkkL~---sHP~~e---VrKQAkrL 359 (368)
+ |+-| =..|+...|+.++++|. .||..= +..+.++|
T Consensus 216 f~l~da-i~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L 258 (343)
T PRK06585 216 DDAADA-ALAGDLAAFERALDRALAEGTAPVLILRAALRHFQRL 258 (343)
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 2 2222 24577778999999995 366543 34444444
No 248
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=35.11 E-value=1.9e+02 Score=30.70 Aligned_cols=79 Identities=13% Similarity=-0.042 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC-----ccchHHHHHHHHHHHHhcCChHHHHHHHH--------HH-
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-----SELHGLAALQWSICQDSLHRPKEARIMYE--------KL- 344 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-----S~LGGeaqLwLAiAydA~GR~~EAiaLYk--------kL- 344 (368)
.|--.+-.+-..+-+|.+..|...++.+.+.+... ..+.-.+.+=.++.+++.|+.+.|...|. ..
T Consensus 360 ~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~ 439 (608)
T PF10345_consen 360 QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAAN 439 (608)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhc
Confidence 34445566888999999999999999988877644 34677888889999999999999999997 33
Q ss_pred hcCCCHHHHHHHH
Q 017641 345 QSHPNALVSKRAR 357 (368)
Q Consensus 345 ~sHP~~eVrKQAk 357 (368)
...+..+++==|.
T Consensus 440 ~~~~~~El~ila~ 452 (608)
T PF10345_consen 440 RKSKFRELYILAA 452 (608)
T ss_pred cCCcchHHHHHHH
Confidence 3577777665443
No 249
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=35.08 E-value=1.8e+02 Score=34.25 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHh---hccc-Cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMN---KMVF-KSEL------------HGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~---~v~~-~S~L------------GGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
-|+-++.+-.||+...|++||||+=. .|.+ =++. --..--||+--+|+.|..+.|++.|..-+-
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 35568889999999999999999611 0000 0000 113345999999999999999999987654
Q ss_pred C
Q 017641 347 H 347 (368)
Q Consensus 347 H 347 (368)
|
T Consensus 941 ~ 941 (1416)
T KOG3617|consen 941 Y 941 (1416)
T ss_pred h
Confidence 3
No 250
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.95 E-value=2.3e+02 Score=22.61 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHH--HHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA--ALQWSIC 327 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea--qLwLAiA 327 (368)
..+..+......|.+.+|+..|+.|+++.-...-..+.. -+|++..
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l 90 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANL 90 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 467788899999999999999999998887776655544 3444443
No 251
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.85 E-value=2.3e+02 Score=27.56 Aligned_cols=82 Identities=10% Similarity=0.027 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcCchhhh--hHHHHHHHhhcccCccchHHHHHHHHHHH---------HhcCChHHHHHHHHHHh-
Q 017641 278 SECEKALKDGDSLMDSGKLKEA--LPFYEKVMNKMVFKSELHGLAALQWSICQ---------DSLHRPKEARIMYEKLQ- 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~A--V~~lEkA~~~v~~~S~LGGeaqLwLAiAy---------dA~GR~~EAiaLYkkL~- 345 (368)
-.+++.++-+..+++.|.--+. +.-++.+.+....+-.+.+...-..+.++ +..++...|+++|++-.
T Consensus 127 ~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~ 206 (230)
T PHA02537 127 FVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQ 206 (230)
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHH
Confidence 3455666667777777752111 12233344445555566666666666666 56788999999999874
Q ss_pred cCCCHHHHHHHHHH
Q 017641 346 SHPNALVSKRARQF 359 (368)
Q Consensus 346 sHP~~eVrKQAkrL 359 (368)
-||+..|++.=++|
T Consensus 207 l~~k~GVK~~i~~l 220 (230)
T PHA02537 207 LNDKCGVKKDIERL 220 (230)
T ss_pred hCCCCChHHHHHHH
Confidence 79999998866655
No 252
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.82 E-value=71 Score=26.09 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
..+..-+..+..+=..|+|.+|+-+|.++.+.+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344555666777778899999999998876654
No 253
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.79 E-value=1.6e+02 Score=22.70 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHH
Q 017641 322 LQWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRAR 357 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAk 357 (368)
+..|+-.|-.|+.++|+.+|.+ +..-|++..++.-+
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~ 53 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLR 53 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3346778999999999999875 34566766655433
No 254
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.56 E-value=2.6e+02 Score=25.95 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM 360 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLl 360 (368)
.+=.|..+|.||.+.+|+..|..+.+- +..-+...--+|.|+.+.|...==+--++-|.+.++++..--.|.|.
T Consensus 47 d~~dg~l~i~rg~w~eA~rvlr~l~~~----~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 47 DMFDGWLLIARGNYDEAARILRELLSS----AGAPPYGKALLALCLNAKGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred chhHHHHHHHcCCHHHHHHHHHhhhcc----CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 344699999999999999988775443 22224444456889988887543333334445555555555555554
No 255
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.21 E-value=1.8e+02 Score=24.10 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
.....++++.+|-.++..|+|..|..++.++.+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999999655
No 256
>KOG4076 consensus Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.14 E-value=35 Score=30.52 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHhcCchhhhhH
Q 017641 274 PKLKSECEKALKDGDSLMDSGKLKEALP 301 (368)
Q Consensus 274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~ 301 (368)
|.-..-..+.++.|+.+|+.|+|.-+-.
T Consensus 46 P~~sd~l~krlQkgrKyFDSGDYam~KA 73 (121)
T KOG4076|consen 46 PGGSDFLRKRLQKGRKYFDSGDYAMAKA 73 (121)
T ss_pred CcccHHHHHHHHhcccccccchHHHHHh
Confidence 4448888999999999999999976543
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=34.07 E-value=88 Score=33.36 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-|-.|..++=.|+..+|++++++|+.+-|++-. -+.+++|+-|-|. .+.++||++|-+-+
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 434 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRK-AVVIKECVDMYVP--NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH-HHHHHHHHHHHcC--CchhhhHHHHhhcc
Confidence 345577777889999999999999988776543 3677777766554 58899999987764
No 258
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=33.56 E-value=41 Score=25.47 Aligned_cols=35 Identities=14% Similarity=-0.069 Sum_probs=26.8
Q ss_pred CccchHHHHHHHHHHHH-hcCChHHHHHHHHHHhcC
Q 017641 313 KSELHGLAALQWSICQD-SLHRPKEARIMYEKLQSH 347 (368)
Q Consensus 313 ~S~LGGeaqLwLAiAyd-A~GR~~EAiaLYkkL~sH 347 (368)
++=.|.++.-||.-+.+ -+..++||+.|++.|..|
T Consensus 16 ~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~ 51 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDH 51 (74)
T ss_dssp CEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHC
T ss_pred CEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHC
Confidence 45567777777775444 488999999999999754
No 259
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.73 E-value=1.7e+02 Score=31.32 Aligned_cols=67 Identities=24% Similarity=0.398 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHH-HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHH
Q 017641 250 RAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALK-DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI 326 (368)
Q Consensus 250 kaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~-~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAi 326 (368)
+..+...+..-|..||.+. .++-++.++. .|+-++..|++..|+..|-.|.+.|. -.+=-|.||+..
T Consensus 126 a~~~le~L~~eLk~yK~n~-------iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT---s~khvInm~ln~ 193 (466)
T KOG0686|consen 126 AVLKLEKLDNELKSYKDNL-------IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT---SAKHVINMCLNL 193 (466)
T ss_pred HHHHHHHHHHHHHHhhcch-------hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc---chHHHHHHHHHH
Confidence 3455566666777787443 5666665555 49999999999999999999999984 445556666543
No 260
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.48 E-value=1.5e+02 Score=26.49 Aligned_cols=65 Identities=20% Similarity=0.106 Sum_probs=43.2
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQF 359 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrL 359 (368)
.-..+|+||+|.+|+ ++. ... -.-...=|+|.|-=.+|-...+-.-..+|...-+++...=|.-|
T Consensus 46 r~~sLmNrG~Yq~AL--l~~-~~~------~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~g~~~~q~Fa~~~ 110 (116)
T PF09477_consen 46 RLSSLMNRGDYQEAL--LLP-QCH------CYPDLEPWAALCAWKLGLASALESRLTRLASSGSPELQAFAAGF 110 (116)
T ss_dssp HHHHHHHTT-HHHHH--HHH-TTS--------GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHH--Hhc-ccC------CCccHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 356899999999993 222 111 11234568899999999999998888888888888776555444
No 261
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.27 E-value=4.9e+02 Score=27.84 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc-Cccch------------HHHHHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSELH------------GLAALQ 323 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~-~S~LG------------GeaqLw 323 (368)
..+.|...-++-|+.++++..+.+-. .-.|.++.|+..|+++...... ...+. =.-.+.
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~--------~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~ 263 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAY--------KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIE 263 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHH
Confidence 34444444455688888876554322 3459999999999998766432 11121 111122
Q ss_pred HHHHHHhcCChHHHHHHHHHHh---cCCCHHHHHHHHHHhhhhh
Q 017641 324 WSICQDSLHRPKEARIMYEKLQ---SHPNALVSKRARQFMFSFQ 364 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~---sHP~~eVrKQAkrLlyiLE 364 (368)
|.-+. ..++..+|+.+|..|. -+|..=+.--+.++.++++
T Consensus 264 L~~ai-~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~ 306 (507)
T PRK06645 264 FVEYI-IHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNK 306 (507)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33322 3478889999999995 2444444555666655554
No 262
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=32.22 E-value=63 Score=26.27 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMN 308 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (368)
++++.-|+.++.+++.|.|..|+=+.++|++
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavE 32 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAE 32 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4577889999999999999877666555543
No 263
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=32.21 E-value=41 Score=25.68 Aligned_cols=36 Identities=8% Similarity=-0.212 Sum_probs=27.1
Q ss_pred ccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 017641 311 VFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 347 (368)
Q Consensus 311 ~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (368)
-.++=.|.++.-||..+.. +..+.+|+.|++.|..+
T Consensus 17 ~~~~F~G~e~v~wL~~~~~-~~~r~eA~~l~~~ll~~ 52 (77)
T smart00049 17 YPNCFTGSELVDWLMDNLE-IIDREEAVHLGQLLLDE 52 (77)
T ss_pred CcceeEcHHHHHHHHHcCC-cCCHHHHHHHHHHHHHC
Confidence 3456678888888877766 45569999999999643
No 264
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=32.20 E-value=2.2e+02 Score=30.37 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
.++.|..+|.+|+|.+|..-|..|++--
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 4455555666666666666665555543
No 265
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.18 E-value=4.6e+02 Score=27.82 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------HHHHH
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------GLAAL 322 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------GeaqL 322 (368)
..+.+.|...-++.|++++++....+-+ +-.|.++.|+..||+++.. ...+. .+...
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~--------~s~GdlR~aln~Lekl~~~---~~~It~~~V~~~l~~~~~~~if 246 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVAR--------LADGAMRDAESLLERLLAL---GTPVTRKQVEEALGLPPQERLR 246 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHCCCcHHHHH
Confidence 3455666666667799998876554322 2349999999999997543 11121 22233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc---CCCHHHHHHHHHHh
Q 017641 323 QWSICQDSLHRPKEARIMYEKLQS---HPNALVSKRARQFM 360 (368)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkkL~s---HP~~eVrKQAkrLl 360 (368)
.+.-++ ..++..+|+.+|+.|.. +|..-++.-.++++
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r 286 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFR 286 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444 44789999999999963 34444555555554
No 266
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=31.35 E-value=1.5e+02 Score=32.06 Aligned_cols=94 Identities=15% Similarity=0.029 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCChhhH--HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHH--H
Q 017641 251 AAKEERTRQLLAAYKKSVGLNVDPKLK--SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS--I 326 (368)
Q Consensus 251 aar~~rtke~LaaYrk~~Gl~Vd~~~~--~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLA--i 326 (368)
..+.+|++.+...|...++-..-.+.. ......|-.+...|.-|+|+.|.+.|..-+...|- -+-+|-. -
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~ 348 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGD 348 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence 456677777777776666555544432 24445788899999999999999999997777773 3333322 2
Q ss_pred HHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 327 CQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 327 AydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.|=..||.++|+..+++.. .-|+.
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcCCCc
Confidence 3456899999999999986 57773
No 267
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=31.34 E-value=4.6e+02 Score=24.90 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----------ccchHHHHHHH
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----------SELHGLAALQW 324 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----------S~LGGeaqLwL 324 (368)
....+.|..+-++.|+.++++....+-+ .-.|.++.++..+|++....... +.........+
T Consensus 179 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~--------~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l 250 (355)
T TIGR02397 179 EDIVERLKKILDKEGIKIEDEALELIAR--------AADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIEL 250 (355)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHH
Confidence 3455666777777899999875544322 23588899999998876543210 00111122233
Q ss_pred HHHHHhcCChHHHHHHHHHHhc
Q 017641 325 SICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~s 346 (368)
.-+. ..++..+|+.++..|..
T Consensus 251 ~~ai-~~~~~~~a~~~~~~l~~ 271 (355)
T TIGR02397 251 LEAI-LNKDTAEALKILDEILE 271 (355)
T ss_pred HHHH-HcCCHHHHHHHHHHHHH
Confidence 3322 24789999999999864
No 268
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=30.82 E-value=2.8e+02 Score=29.41 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=36.4
Q ss_pred HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 017641 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350 (368)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~ 350 (368)
.-..|.+.+|..+|+...+.-..... -+.--.++-+|-..|+.+||..++++.-..|+.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 44678888888888877653222111 122333556777888888888888775444443
No 269
>PRK10316 hypothetical protein; Provisional
Probab=30.14 E-value=2e+02 Score=27.96 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=41.9
Q ss_pred hhcCCcCChhh----HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc
Q 017641 266 KSVGLNVDPKL----KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS 314 (368)
Q Consensus 266 k~~Gl~Vd~~~----~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S 314 (368)
+-.|++|+--. +.+.+..+.....+++.|+|-+|-..|-+|.+-|.+-|
T Consensus 151 klAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~d~iv~ds 203 (209)
T PRK10316 151 RLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAEDGIIVDS 203 (209)
T ss_pred HHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhccceEEee
Confidence 45788888764 58889999999999999999999999999988876644
No 270
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=29.85 E-value=82 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
.+.++.+...=..|.|.+|+.+|..+++.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444455557777777777776654
No 271
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=29.23 E-value=73 Score=26.87 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHhcCChHHHHHHHHHHhcC--CCHHHHHHHHHHhhh
Q 017641 328 QDSLHRPKEARIMYEKLQSH--PNALVSKRARQFMFS 362 (368)
Q Consensus 328 ydA~GR~~EAiaLYkkL~sH--P~~eVrKQAkrLlyi 362 (368)
+.-+.+.++.|++|+++.+. ..++.|.++.+++=-
T Consensus 6 ~tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~ 42 (85)
T PF07240_consen 6 ATKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRR 42 (85)
T ss_pred HHHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHH
Confidence 45567899999999999765 999999999988743
No 272
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=29.01 E-value=4e+02 Score=23.45 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHH
Q 017641 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL 322 (368)
Q Consensus 275 ~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL 322 (368)
.++..++..++.++.++.+|.+..|-.+||-|=-+--...-+|-.+-+
T Consensus 4 ~~~~~~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~ 51 (112)
T PF12487_consen 4 ALRPAYDAELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHW 51 (112)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHH
Confidence 466778889999999999999999999999986555455555554443
No 273
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.72 E-value=5.4e+02 Score=24.86 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcCCcCChhh---HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch----------------
Q 017641 257 TRQLLAAYKKSVGLNVDPKL---KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------- 317 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~---~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------- 317 (368)
..+.|+.||++..+.---+. ...+.+.-..-+.+++.|+|-.|++.++..-+.+..-+.+.
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i 180 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELI 180 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHH
Confidence 44566667776655322222 24455556668889999999999999999776664322222
Q ss_pred ----------------HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 017641 318 ----------------GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF 361 (368)
Q Consensus 318 ----------------GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (368)
-..--.+-.||.-+|+.+. +..+|..|=...|-..+..++.
T Consensus 181 ~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~---~~dkl~~~f~~~i~~~~~~vv~ 237 (291)
T PF10475_consen 181 EEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQS---AMDKLQMHFTSAIHSTTFSVVR 237 (291)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 1111123345666675543 5667766666666666666554
No 274
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.60 E-value=75 Score=32.43 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc
Q 017641 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS 314 (368)
Q Consensus 274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S 314 (368)
|+..++++...+=+..|.+.-..+.||++|.||++++...|
T Consensus 297 pE~faea~K~~kyA~sAl~yedVstavenL~KaL~lLt~~s 337 (338)
T KOG0917|consen 297 PEDFAEAQKYCKYAGSALQYEDVSTAVENLQKALKLLTTGS 337 (338)
T ss_pred HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhhcCC
Confidence 44455556666666677777788899999999999987655
No 275
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=28.49 E-value=25 Score=38.17 Aligned_cols=64 Identities=27% Similarity=0.377 Sum_probs=36.5
Q ss_pred Cccccceeee--cccccccccccccCCCCCCCCccccCCCCCCCCCceEEEecCCCCCCCcccCCCCCCCccccccccCc
Q 017641 138 GKKEGLKISS--IDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPK 215 (368)
Q Consensus 138 ~kk~~~~~~~--~Df~gl~F~~kk~~~glp~gL~~~~d~~~~~~lpeveii~~d~~~f~~~~~~~~~~~~~~~~~~YKPk 215 (368)
+.++.|.+-. +.|+ =.|. +-.-|++.++ -+|-|--..+|.+-+. .-|.+...|.
T Consensus 453 Gp~~GyvyQKaylEfF-----~~k~---~~~~l~~~~k-----~~~~vtY~a~n~~g~~-----------~tn~~~~~~n 508 (590)
T KOG0564|consen 453 GPPGGYVYQKAYLEFF-----VSKE---LLDKLIEKLK-----ALPSVTYHAVNKKGEF-----------VTNADESDPN 508 (590)
T ss_pred CCCCCeEeehhhhHHh-----cCHH---HHHHHHHHHh-----cccceEEEEecccccc-----------ccCCCCCCCc
Confidence 3467777666 4443 2221 2233555555 4566766666654421 2244566789
Q ss_pred cccccccCCC
Q 017641 216 VSTWGVFPRP 225 (368)
Q Consensus 216 VsTWGvFPRP 225 (368)
+-||||||.-
T Consensus 509 AVTWGVFPgr 518 (590)
T KOG0564|consen 509 AVTWGVFPGR 518 (590)
T ss_pred eeEeeccCCC
Confidence 9999999953
No 276
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=28.43 E-value=2.3e+02 Score=28.27 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 349 (368)
.-..|-.++..|+..+|-..|-+|+++.+..-.. .=.++|-|.--|+.++|.++-......|.
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~----~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSI----ANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchh----hhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 3345777777777777777777777776665443 33445555557777777777777765444
No 277
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.43 E-value=74 Score=23.36 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMN 308 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (368)
.|..++.+++-|++..|.+.|+.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46788999999999999999999985
No 278
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=28.14 E-value=3.1e+02 Score=29.56 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcC--CcCChhhHHHHHHHHHH--HHHHHhcCchhhhhHHHHHHHhhcc-----------cCccchHHHHH
Q 017641 258 RQLLAAYKKSVG--LNVDPKLKSECEKALKD--GDSLMDSGKLKEALPFYEKVMNKMV-----------FKSELHGLAAL 322 (368)
Q Consensus 258 ke~LaaYrk~~G--l~Vd~~~~~e~eea~~~--Gk~AmerGkYr~AV~~lEkA~~~v~-----------~~S~LGGeaqL 322 (368)
++.+..|+.... -.+++...+.|...++. -..++.+|+|.+|++.+++- ..+| .-..|+.+|+-
T Consensus 479 ~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L-~liP~~~~~V~~~a~~f~~l~~~V~~ 557 (613)
T PF04097_consen 479 KEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL-DLIPLDPSEVRRCAENFRQLDDEVRR 557 (613)
T ss_dssp HHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT-T-S-S-HHHHHHHHHCGCCS-HHHHT
T ss_pred HHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHhcCCHHHHH
Confidence 445555654322 13888899999988776 55789999999999998873 3444 11224444432
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCC---------HHHHHHHHHHh
Q 017641 323 QWSICQDSLHRPKEARIMYEKLQSHPN---------ALVSKRARQFM 360 (368)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkkL~sHP~---------~eVrKQAkrLl 360 (368)
.+-..+-+. -+=...+|++++.++. .++|+||+.|+
T Consensus 558 ~lp~lLl~~--M~~l~~~~~~~~~~~~~~~~~~~~l~~lr~~ak~l~ 602 (613)
T PF04097_consen 558 NLPDLLLAA--MDCLSRLYQRLKTSSYGSSSRQQQLDELREKAKALM 602 (613)
T ss_dssp THHHHHHHH--HHHHHHHHHHHHSTT---TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHH
Confidence 211111100 0112346777765553 46888888876
No 279
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=27.68 E-value=43 Score=32.92 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=38.2
Q ss_pred cCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 268 VGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 268 ~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
.++.++++...+++...+=+..|++.-++..|+..|++|+++|
T Consensus 337 ~~~~~~~~~i~~aQK~aK~AiSAL~feDv~tA~~~L~~AL~lL 379 (380)
T PF04652_consen 337 SGIMPDPEQIAKAQKHAKFAISALNFEDVPTAIKELRKALELL 379 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccC
Confidence 4557788889999999999999999999999999999999986
No 280
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.68 E-value=47 Score=35.70 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 017641 318 GLAALQWSICQDSLHRPKEARIMYEKLQSH 347 (368)
Q Consensus 318 GeaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (368)
..+++.++.|||-+++.++|+.+|++=.+|
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 345677888999999999999999875443
No 281
>PRK01631 hypothetical protein; Provisional
Probab=27.66 E-value=1.4e+02 Score=24.83 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhc-------------CCcCChhhHHHHHHHHH
Q 017641 246 TAEARAAKEERTRQLLAAYKKSV-------------GLNVDPKLKSECEKALK 285 (368)
Q Consensus 246 teEEkaar~~rtke~LaaYrk~~-------------Gl~Vd~~~~~e~eea~~ 285 (368)
|++|++++.+=-++-|+.+|..+ |-+|.|+.....+..++
T Consensus 21 T~eE~~Eq~~LR~eYl~~fR~~~~~~L~~i~ivD~~G~dvTP~Klk~~q~~~~ 73 (76)
T PRK01631 21 TVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQNGLNVTPAALQDAQIRLK 73 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeECCCCCcCCHHHHHHHHHHHh
Confidence 88899888888888899999764 88888887766655443
No 282
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.64 E-value=2.3e+02 Score=21.41 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhhhh
Q 017641 321 ALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSF 363 (368)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiL 363 (368)
-.++|+++=.+|+.++|+..++.| +.+|+- .||+.|.-.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHH
Confidence 457899999999999999999998 478874 4666665544
No 283
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=27.54 E-value=86 Score=27.48 Aligned_cols=46 Identities=17% Similarity=-0.076 Sum_probs=36.8
Q ss_pred cCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHHHHHHHHH
Q 017641 312 FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNALVSKRARQ 358 (368)
Q Consensus 312 ~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~eVrKQAkr 358 (368)
.++-+|-++-=||.-|-..+ -+.||+.||+.|- -+|....+|-|.+
T Consensus 29 ~~CF~Gse~VDWLv~~~~~i-~R~EAv~l~q~Lmd~gli~hV~~~s~~~~~ 78 (109)
T cd04444 29 KKTFLGSALVDWLISNSFAA-SRLEAVTLASMLMEENFLRPVGVRSMGAIR 78 (109)
T ss_pred cccccchHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCchhhHHHHhhhhhh
Confidence 34667888888999988877 8899999999996 3677777777765
No 284
>PF10228 DUF2228: Uncharacterised conserved protein (DUF2228); InterPro: IPR019361 This entry contains proteins that have no known function.
Probab=27.06 E-value=97 Score=30.45 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc-cchHHHHHHHHHHHHhcCC
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-ELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-~LGGeaqLwLAiAydA~GR 333 (368)
..++.+|..-.+-..-+...+..+..++.+...+.|.+-|.|..+++ =-+++...++ .+|-.+-.-|.+||..++|
T Consensus 171 ~~Lk~il~~i~~a~~~~~~~~~~~~lqel~t~v~~AnDEcDfG~gLE---LG~dLF~~g~~~f~~~~~~lL~~AY~lL~R 247 (253)
T PF10228_consen 171 AELKKILKKIVEAKNDEERQKAFAPLQELVTFVQIANDECDFGMGLE---LGHDLFCYGSKYFHKVALQLLPMAYSLLKR 247 (253)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccccCcchhe---ecceeeecCchHHHHHHHHHHHHHHHHhCc
Confidence 45666676666544444445567888999999999999999999765 4566666665 7888888889999999999
Q ss_pred hH
Q 017641 334 PK 335 (368)
Q Consensus 334 ~~ 335 (368)
.+
T Consensus 248 ~~ 249 (253)
T PF10228_consen 248 PL 249 (253)
T ss_pred hh
Confidence 75
No 285
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=26.85 E-value=47 Score=32.01 Aligned_cols=54 Identities=24% Similarity=0.490 Sum_probs=37.6
Q ss_pred ccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCChh
Q 017641 217 STWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK 275 (368)
Q Consensus 217 sTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaar~~rtke~LaaYrk~~Gl~Vd~~ 275 (368)
++.|-||||.-+.++. +....|+ +..++=+++.++.+++.+..-+ +.||+|-..
T Consensus 3 t~vGS~prp~~l~~a~---~~~~~g~-~~~~~l~~~~~~ai~~~v~~Q~-~~GldiitD 56 (332)
T cd03311 3 TTVGSFPRPKELREAR---AKFKKGE-ISAEELREAEDDAIADAVKDQE-EAGLDVVTD 56 (332)
T ss_pred ceecCCCCCHHHHHHH---HHHhcCC-CCHHHHHHHHHHHHHHHHHHHH-HhCCCcccc
Confidence 5789999999998874 2223443 5566666777777777777664 788887543
No 286
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=26.74 E-value=3.8e+02 Score=32.98 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHh--------------cCchhhhhHHHHHHHhhcccCccchHHHHHH
Q 017641 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD--------------SGKLKEALPFYEKVMNKMVFKSELHGLAALQ 323 (368)
Q Consensus 258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Ame--------------rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw 323 (368)
.|+|+=+-.=++|++-=...+.|++.|+.+-++++ .+++.+|-++|+.-+.+.. +++ .+-+.
T Consensus 1494 eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~---~vW~~ 1569 (1710)
T KOG1070|consen 1494 EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR---KVWIM 1569 (1710)
T ss_pred HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh---hHHHH
Confidence 35565554446666666677888888888777777 5677888888888776654 222 34444
Q ss_pred HHHHHHhcCChHHHHHHHHH-Hh---cCCCHHHHHHHHHHhhh
Q 017641 324 WSICQDSLHRPKEARIMYEK-LQ---SHPNALVSKRARQFMFS 362 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkk-L~---sHP~~eVrKQAkrLlyi 362 (368)
|+..+=..+..++|+.+-++ |+ +|-|.++=.|-.||.|-
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 55555555555556665543 33 57789998888999884
No 287
>PLN03218 maturation of RBCL 1; Provisional
Probab=26.35 E-value=1.7e+02 Score=33.98 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=27.6
Q ss_pred HhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
...|++.+|++.|+...+. .-...-.+.-.|..+|-..|+.++|+.+|+.+.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445555555555554332 111122334445566666777777777777664
No 288
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.97 E-value=1.7e+02 Score=27.80 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHhh----cccCccch-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 297 KEALPFYEKVMNK----MVFKSELH-GLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 297 r~AV~~lEkA~~~----v~~~S~LG-GeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..|...|++|++. +++...+- |.+-=+=+-.|+-+|..++|+.|.++-
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6788888887654 44444333 444333344569999999999999875
No 289
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.76 E-value=1.5e+02 Score=27.87 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=38.8
Q ss_pred hhhHHHHHHHhhcc--cCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 298 EALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 298 ~AV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..|++|++|++... ...++.-.+.+++|.-|-.+|+.++|..+++.+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45667777666544 2368888899999999999999999999999984
No 290
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=25.55 E-value=2.8e+02 Score=20.58 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH-HhcCCCHHHHHHHH
Q 017641 297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK-LQSHPNALVSKRAR 357 (368)
Q Consensus 297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk-L~sHP~~eVrKQAk 357 (368)
.++++.|...+. + =...++.+-+.++-.+|. ++++....+ |...++..||..|-
T Consensus 30 ~~~~~~L~~~l~-----d-~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 30 PEAIPALIELLK-----D-EDPMVRRAAARALGRIGD-PEAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp HHHHHHHHHHHT-----S-SSHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC-SSHHHHHHHH
T ss_pred HhHHHHHHHHHc-----C-CCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 355555555441 1 113566666666666663 444444444 34445555566554
No 291
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=25.46 E-value=1e+02 Score=25.72 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
...|...++++..++..|++..|.-+|-+.++++
T Consensus 35 ~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 35 LRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999877766
No 292
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=25.30 E-value=94 Score=34.75 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.|+.....|+.++|+.++.+.++++. +-.=||+.---+.+-+-.+|+.+||...++.=
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~g 67 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK----KFPEHGESLAMKGLTLNCLGKKEEAYELVRLG 67 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH----hCCccchhHHhccchhhcccchHHHHHHHHHH
Confidence 45666778999999999999999988 44457888777777889999999999988753
No 293
>PF13041 PPR_2: PPR repeat family
Probab=25.02 E-value=90 Score=21.71 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=18.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhcC
Q 017641 325 SICQDSLHRPKEARIMYEKLQSH 347 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~sH 347 (368)
--+|-..|+.++|..||+++..+
T Consensus 10 i~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 10 ISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHc
Confidence 34567789999999999999743
No 294
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.98 E-value=3.6e+02 Score=30.18 Aligned_cols=63 Identities=22% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHH
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSK 354 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrK 354 (368)
+.+--+|.-++..+|+..|+ -++..+.+ .++=++| + +=.+||.++|.++|+.|.+|-..+..-
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-~~~~~~~~-ll~L~AQ----v-lYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-GLDRLDDK-LLELRAQ----V-LYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-cccccchH-HHHHHHH----H-HHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 33445677888888888887 22322211 1222222 3 336799999999999998776665544
No 295
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.46 E-value=8e+02 Score=26.36 Aligned_cols=89 Identities=15% Similarity=0.055 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhcCCc----------CChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHH
Q 017641 253 KEERTRQLLAAYKKSVGLN----------VDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL 322 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~----------Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL 322 (368)
|.+-+.+++-.|..+..-+ ..+..- ..-..|=.++-+--.|+|.+|+++.++|++.-|.- -+.-+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~-~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~----~ely~ 232 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST-LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL----VELYM 232 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHH
Confidence 3456777888887654221 112211 12245666777778999999999999999986543 47789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc
Q 017641 323 QWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkkL~s 346 (368)
+.|-+|--.|+.++|....+.-+.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999988877654
No 296
>PF12854 PPR_1: PPR repeat
Probab=24.23 E-value=90 Score=20.90 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=16.3
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 017641 324 WSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL 344 (368)
|.-+|=..||.++|+.+.++.
T Consensus 13 lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 13 LIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHhC
Confidence 456777889999998888754
No 297
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.22 E-value=71 Score=22.59 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHh-cCCCHHH
Q 017641 334 PKEARIMYEKLQ-SHPNALV 352 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~eV 352 (368)
.+-|++||+++. -||+..+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~ 22 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKN 22 (32)
T ss_pred HHHHHHHHHHHHHhCCCchH
Confidence 578999999996 7998764
No 298
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=23.94 E-value=6.1e+02 Score=26.37 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------HHHHHH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------GLAALQ 323 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------GeaqLw 323 (368)
.+.+.|...-++.|++++++.....-. +-.|.++.|+..||++..... ..+. ...-..
T Consensus 184 el~~~L~~~~~~eg~~i~~~al~~L~~--------~s~gdlr~a~~~Lekl~~~~~--~~It~~~V~~l~~~~~~~~vf~ 253 (451)
T PRK06305 184 TIIDKLALIAKQEGIETSREALLPIAR--------AAQGSLRDAESLYDYVVGLFP--KSLDPDSVAKALGLLSQDSLYT 253 (451)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHHhcc--CCcCHHHHHHHHCCCCHHHHHH
Confidence 344455555566789998886544222 224899999999998765422 1111 122223
Q ss_pred HHHHHHhcCChHHHHHHHHHHh
Q 017641 324 WSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~ 345 (368)
|..|+ ..++.++|+.+|..|.
T Consensus 254 L~~ai-~~~d~~~al~~l~~L~ 274 (451)
T PRK06305 254 LDEAI-TTQNYAQALEPVTDAM 274 (451)
T ss_pred HHHHH-HcCCHHHHHHHHHHHH
Confidence 33222 2357889999998885
No 299
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=23.37 E-value=5.1e+02 Score=27.74 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch------------HHHHHHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------GLAALQW 324 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------GeaqLwL 324 (368)
..+.|...-++.|+.++++....+-. +..|.++.|+..|++++... ...+. -+....+
T Consensus 183 i~~~L~~i~~~egi~i~~~al~~ia~--------~s~G~~R~al~~Ldq~~~~~--~~~It~~~V~~vlg~~~~~~i~~l 252 (559)
T PRK05563 183 IVERLKYILDKEGIEYEDEALRLIAR--------AAEGGMRDALSILDQAISFG--DGKVTYEDALEVTGSVSQEALDDL 252 (559)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHHhc--cCCCCHHHHHHHhCCCCHHHHHHH
Confidence 44445555567799999876554332 33599999999999987652 11221 1122233
Q ss_pred HHHHHhcCChHHHHHHHHHHhc
Q 017641 325 SICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~s 346 (368)
..|+ ..++..+|+.++.+|..
T Consensus 253 ~~al-~~~d~~~al~~l~~l~~ 273 (559)
T PRK05563 253 VDAI-VEGDVAKALKILEELLD 273 (559)
T ss_pred HHHH-HccCHHHHHHHHHHHHH
Confidence 3333 34788899999998853
No 300
>PLN03077 Protein ECB2; Provisional
Probab=23.35 E-value=3.8e+02 Score=29.22 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHH
Q 017641 260 LLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARI 339 (368)
Q Consensus 260 ~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAia 339 (368)
.|-.+..+.|+..|..+... .-..+...|++.+|...|+... .+... +---+..+|-..|+.++|+.
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~------Li~~y~k~g~~~~A~~vf~~m~----~~d~~---s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNS------LIQMYLSLGSWGEAEKVFSRME----TKDAV---SWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHHHHHhCCccchHHHHH------HHHHHHhcCCHHHHHHHHhhCC----CCCee---eHHHHHHHHHhCCCHHHHHH
Confidence 34444455566655443321 1223445566666666665521 11111 11113445555666666666
Q ss_pred HHHHHh
Q 017641 340 MYEKLQ 345 (368)
Q Consensus 340 LYkkL~ 345 (368)
+|+++.
T Consensus 376 lf~~M~ 381 (857)
T PLN03077 376 TYALME 381 (857)
T ss_pred HHHHHH
Confidence 666553
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.31 E-value=1.7e+02 Score=30.51 Aligned_cols=52 Identities=29% Similarity=0.117 Sum_probs=46.6
Q ss_pred CchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 294 GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 294 GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-..++|+..|++|+++-+-+.+-|=.+--|..-.+=.+|+.+|-+.-|++|-
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3788999999999999999999998888888888889999999999999983
No 302
>PF05235 CHAD: CHAD domain; InterPro: IPR007899 The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family IPR008172 from INTERPRO. It has conserved histidines that may chelate metals [].; PDB: 3E0S_B.
Probab=23.24 E-value=2e+02 Score=25.98 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccC--------ccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC----C
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--------SELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP----N 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--------S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP----~ 349 (368)
.+.+.-..+.....|...+..++..+..-... ..+.--+.-.+.-.| ......+..+..+| -
T Consensus 102 ~~~~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~l 175 (231)
T PF05235_consen 102 RAREKLLEALRSARYRRLLLELEAWLAAPPWLTPAEEEASEPLRKFARRRLRRRY------RKLRKALRALDREPDDEEL 175 (231)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHT--S---TTSTTTTSBHHHHHHHHHHHHH------HHHHHHH--------THHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhCccccccccccccccHHHHHHHHHHHHH------HHHHHHHHHhhhcCChHHH
Confidence 33444456677778888777777766333222 122222222222222 22233333332111 3
Q ss_pred HHHHHHHHHHhhhhhcc
Q 017641 350 ALVSKRARQFMFSFQVY 366 (368)
Q Consensus 350 ~eVrKQAkrLlyiLEAm 366 (368)
-++|+++|+|+|.+|..
T Consensus 176 H~lR~~~K~lRY~~e~~ 192 (231)
T PF05235_consen 176 HRLRKAAKRLRYALEFF 192 (231)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999998853
No 303
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.23 E-value=93 Score=26.72 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 319 LAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
.-=+.||..|+..|+.++|-++|+.
T Consensus 100 ~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 100 LFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445699999999999999999975
No 304
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.49 E-value=2.6e+02 Score=29.09 Aligned_cols=62 Identities=8% Similarity=-0.021 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHH--HHHHHHHhcC--ChHHHHHHHHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL--QWSICQDSLH--RPKEARIMYEK 343 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL--wLAiAydA~G--R~~EAiaLYkk 343 (368)
.......+.+|++++|..|...|+...+.... .+.....++ .++.||.+=. ++++|+..-++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44556678999999999999999999887443 334443343 3777888754 46777766653
No 305
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=22.23 E-value=5.8e+02 Score=27.84 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--------H----HHHHH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------G----LAALQ 323 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--------G----eaqLw 323 (368)
.+.+.|...-++.|++++++..+.+-. +-.|.++.++..|++++..- ..++. | ...+.
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~--------~a~Gdlr~al~~Ldkli~~g--~g~It~e~V~~llg~~~~~~if~ 264 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIAR--------AAEGSVRDGLSLLDQAIAHG--AGEVTAEAVRDMLGLADRARVID 264 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHhhc--CCCcCHHHHHHHhCCCCHHHHHH
Confidence 445556666667799999876544322 22589999999999875431 10111 0 11122
Q ss_pred HHHHHHhcCChHHHHHHHHHHhc---CCCHHHHHHHHHHhhh
Q 017641 324 WSICQDSLHRPKEARIMYEKLQS---HPNALVSKRARQFMFS 362 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~s---HP~~eVrKQAkrLlyi 362 (368)
|.. +=..|+.++|+.+|+.|.. +|..=++--++++...
T Consensus 265 L~~-ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L 305 (598)
T PRK09111 265 LFE-ALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLV 305 (598)
T ss_pred HHH-HHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 222 2244788889988888753 6665566666555443
No 306
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=21.87 E-value=2.7e+02 Score=29.43 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=51.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
+-||....|+..+++.+......|+...|..+||-||.+-+.+-. +-+...+-.|.....=+|-.+|-+
T Consensus 107 e~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~----~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 107 ENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ----ILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred ccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH----HHHHHhHHHHhhhhhHhhhhhhhe
Confidence 556777888889999999999999999999999999999887653 444444555555555555555543
No 307
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=21.87 E-value=72 Score=34.64 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHHHHH
Q 017641 318 GLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALVSKR 355 (368)
Q Consensus 318 GeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eVrKQ 355 (368)
+...+||+..|=++|+.++|..|+++|. +||+.-+..|
T Consensus 537 ~i~t~Wl~~~~~~~g~~~~a~~ll~~l~~~a~~~gll~EQ 576 (612)
T COG3387 537 IITTLWLSEYYLALGRLDEAKKLLEWLLAFASPLGLLPEQ 576 (612)
T ss_pred eeehhHHHHHHHHccchHHHHHHHHHHHHhcCCCCCcchh
Confidence 3467999999999999999999999997 5666555443
No 308
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.71 E-value=3.8e+02 Score=27.53 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=55.4
Q ss_pred cCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc---ccCccch-----------HHHHHHHHHHHHhcCC
Q 017641 268 VGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM---VFKSELH-----------GLAALQWSICQDSLHR 333 (368)
Q Consensus 268 ~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v---~~~S~LG-----------GeaqLwLAiAydA~GR 333 (368)
-.|+-|.+.++ ....-+.|.++|..|+|++|...|..|+..+ -.+-.-| --.-+.++-||=-.|.
T Consensus 167 WqlsddeKmka-v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 167 WQLSDDEKMKA-VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred ccCCchHhhhh-hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 33443333332 3445678999999999999999998875433 2222222 1234667889999999
Q ss_pred hHHHHHHHHHHh-cCCC
Q 017641 334 PKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~ 349 (368)
.-|++.-|..+- .||.
T Consensus 246 ~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPG 262 (329)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 999999998875 5553
No 309
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=21.65 E-value=6.7e+02 Score=24.56 Aligned_cols=95 Identities=22% Similarity=0.150 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc--------------ccCccchHH
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM--------------VFKSELHGL 319 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v--------------~~~S~LGGe 319 (368)
.++..+.+..+-+..|+.++++.....-+.+. |.+..+..-+++-.-+. ...+..-+
T Consensus 142 ~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~--------~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~- 212 (334)
T COG1466 142 EAELPQWIKKRAKELGLKIDQEAIQLLLEALG--------GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNI- 212 (334)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC--------CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCH-
Confidence 34677888899999999999997655444433 44444444444443333 33333333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhc---CCCHHHHHHHHHHh
Q 017641 320 AALQWSICQDSLHRPKEARIMYEKLQS---HPNALVSKRARQFM 360 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL~s---HP~~eVrKQAkrLl 360 (368)
+.|+. +=-.|+...|+.+.++|.. +|..=++-..++++
T Consensus 213 --f~l~d-ail~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~ 253 (334)
T COG1466 213 --FDLAD-ALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFR 253 (334)
T ss_pred --HHHHH-HHHCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34444 3356899999999999975 88888888888877
No 310
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=21.31 E-value=74 Score=31.75 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.1
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhh
Q 017641 342 EKLQSHPNALVSKRARQFMFSFQ 364 (368)
Q Consensus 342 kkL~sHP~~eVrKQAkrLlyiLE 364 (368)
.+|++||+.+|++.|+.|+=.+.
T Consensus 50 n~lrkh~~~~I~~lAk~li~~WK 72 (299)
T TIGR01385 50 NKLRKHPNEDISKLAKKIIKSWK 72 (299)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHH
Confidence 57899999999999999986654
No 311
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=21.25 E-value=6e+02 Score=24.02 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc-ccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 017641 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM-VFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 349 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v-~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 349 (368)
..+..-.+.-.+.=-.|..+-+.|++..|++.|-+|+.++ -..|.+--.+| +|--.|+-++|++=..+-..--.
T Consensus 34 ~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQ-----a~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 34 EPDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQ-----ALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred CCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHH-----HHHHcCChHHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHh
Q 017641 350 ALVSKRARQFM 360 (368)
Q Consensus 350 ~eVrKQAkrLl 360 (368)
+.+|-...-+.
T Consensus 109 ~~trtacqa~v 119 (175)
T KOG4555|consen 109 DQTRTACQAFV 119 (175)
T ss_pred ccchHHHHHHH
No 312
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.24 E-value=2.3e+02 Score=28.30 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHH-----------HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKD-----------GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW 324 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~-----------Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL 324 (368)
++--.+|-|-.++|-+..+ .+..+.++.. |--+..+|+|.+|..+|+.|+..=.-.+. -.+...+
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A--~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~--s~t~eN~ 145 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLA--DESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP--SDTLENL 145 (250)
T ss_pred HHHHHHHHHHHHcCChhhH--HHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc--chhhhhh
Confidence 3334455555555544332 2344445544 77888999999999999999876444333 3355667
Q ss_pred HHHHHhcCChHHHHHHHHHHh
Q 017641 325 SICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~ 345 (368)
.+|-=-.|+++.|...|++=.
T Consensus 146 G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHH
Confidence 888888899999999998754
No 313
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=21.18 E-value=6.7e+02 Score=23.25 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHH------------HHHH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL------------AALQ 323 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe------------aqLw 323 (368)
.+...|..+-++.|+.++++....+-. +-.|.++.++..++++... +..+.-+ -...
T Consensus 165 ei~~~l~~~~~~~~~~i~~~al~~l~~--------~~~gd~r~~~~~l~~~~~~---~~~it~~~v~~~~~~~~~~~i~~ 233 (319)
T PRK00440 165 AVAERLRYIAENEGIEITDDALEAIYY--------VSEGDMRKAINALQAAAAT---GKEVTEEAVYKITGTARPEEIRE 233 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHhCCCCHHHHHH
Confidence 345666666667899999886655422 3469999999999987653 1112111 1112
Q ss_pred HHHHHHhcCChHHHHHHHHHHh
Q 017641 324 WSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~ 345 (368)
+.-+. ..++..+|+.+|..|.
T Consensus 234 l~~~~-~~~~~~~a~~~l~~ll 254 (319)
T PRK00440 234 MIELA-LNGDFTEAREKLRDLM 254 (319)
T ss_pred HHHHH-HcCCHHHHHHHHHHHH
Confidence 22222 3478999999999985
No 314
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=20.93 E-value=2.5e+02 Score=27.33 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCch
Q 017641 245 ETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL 296 (368)
Q Consensus 245 EteEEkaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkY 296 (368)
+|+|||++|++.....|..=+ .|-=+.--.|.+++..+..+.+.|.-
T Consensus 96 ~teEEK~~R~~~lQ~Alk~Aa-----~vP~~ia~~~~~~l~l~e~l~~~gNk 142 (208)
T COG3404 96 STEEEKAARRKALQNALKEAA-----KVPLDIATLMVDLLELLEKLVEKGNK 142 (208)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHhccH
Confidence 699999999999988886543 44445566777888888888888764
No 315
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.79 E-value=6.5e+02 Score=27.42 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----------ccchHHHHHHHH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----------SELHGLAALQWS 325 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----------S~LGGeaqLwLA 325 (368)
.+...|...-++.|++++++....+-+ .-.|.++.|+..|+++......+ +...-+..+.|+
T Consensus 184 ei~~~L~~ia~~egi~i~~~al~~La~--------~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~ 255 (614)
T PRK14971 184 DIVNHLQYVASKEGITAEPEALNVIAQ--------KADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLT 255 (614)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHH
Confidence 344556666666799999875444222 12489999999999876554221 001111111222
Q ss_pred HHHHhcCChHHHHHHHHHHhc
Q 017641 326 ICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 326 iAydA~GR~~EAiaLYkkL~s 346 (368)
- +=..++..+|+.+|..|..
T Consensus 256 d-ai~~~~~~~al~ll~~Ll~ 275 (614)
T PRK14971 256 D-ALLAGKVSDSLLLFDEILN 275 (614)
T ss_pred H-HHHcCCHHHHHHHHHHHHH
Confidence 2 1134678999999999863
No 316
>PLN02540 methylenetetrahydrofolate reductase
Probab=20.63 E-value=44 Score=36.22 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=11.7
Q ss_pred cccCccccccccCCC
Q 017641 211 FYKPKVSTWGVFPRP 225 (368)
Q Consensus 211 ~YKPkVsTWGvFPRP 225 (368)
...|..=||||||.=
T Consensus 492 ~~~~navtwgvfp~~ 506 (565)
T PLN02540 492 PGDVNAVTWGVFPAK 506 (565)
T ss_pred CCCCceeeecCCCCC
Confidence 345888999999953
No 317
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=20.62 E-value=1.1e+03 Score=25.52 Aligned_cols=79 Identities=8% Similarity=0.013 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHH---------HHHHHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA---------LQWSIC 327 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaq---------LwLAiA 327 (368)
+.+.|...-++.|+.++++....+-. +-.|.++.|+..|++++..... .+--+.- -.+.-.
T Consensus 183 l~~~L~~i~~~egi~id~eAl~lLa~--------~s~GdlR~alslLdklis~~~~--~It~e~V~~llg~~~~~~if~L 252 (563)
T PRK06647 183 IYNMLKKVCLEDQIKYEDEALKWIAY--------KSTGSVRDAYTLFDQVVSFSDS--DITLEQIRSKMGLTGDEFLEKL 252 (563)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHhhcCC--CCCHHHHHHHhCCCCHHHHHHH
Confidence 34445555556788998886655332 3348999999999987654321 1111000 011112
Q ss_pred HH--hcCChHHHHHHHHHHh
Q 017641 328 QD--SLHRPKEARIMYEKLQ 345 (368)
Q Consensus 328 yd--A~GR~~EAiaLYkkL~ 345 (368)
.+ ..++..+|+.++..|.
T Consensus 253 idaI~~~D~~~al~~l~~Ll 272 (563)
T PRK06647 253 ASSILNEDAKELLCVLDSVF 272 (563)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 23 3567888888888875
No 318
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.56 E-value=7.3e+02 Score=27.53 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC-----------ccchHHHHHHHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-----------SELHGLAALQWS 325 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-----------S~LGGeaqLwLA 325 (368)
+.+.|...-++.|+.++++....+-+ +-.|.++.|+..|++++. +... +....+..+.+.
T Consensus 183 L~~~L~~il~~egi~id~eal~lIA~--------~s~GdlR~Al~lLeqll~-~g~~~It~d~V~~~lg~~~~e~vfeLl 253 (624)
T PRK14959 183 LEAHLTKVLGREGVDYDPAAVRLIAR--------RAAGSVRDSMSLLGQVLA-LGESRLTIDGARGVLGLAGQELFLRLM 253 (624)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 33445555556688898886554332 446999999999998652 1111 111222333444
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 017641 326 ICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 326 iAydA~GR~~EAiaLYkkL~ 345 (368)
.++ ..++...++.++..|.
T Consensus 254 ~AL-~~~D~~aal~~l~~Ll 272 (624)
T PRK14959 254 EAL-AAQDCLGVANVVRELL 272 (624)
T ss_pred HHH-hcCCHHHHHHHHHHHH
Confidence 333 3456777777777774
No 319
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=20.40 E-value=71 Score=31.80 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=34.7
Q ss_pred ccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCh
Q 017641 217 STWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDP 274 (368)
Q Consensus 217 sTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaar~~rtke~LaaYrk~~Gl~Vd~ 274 (368)
++.|-||||.-+-++. +..+.|+ +..++-+++-++.+++.++.= +..||+|-.
T Consensus 6 t~VGS~prp~~l~~~~---~~~~~g~-i~~~~l~~~~~~ai~~~V~~Q-~~aGldiit 58 (339)
T PRK09121 6 STAGSLPKPSWLAEPE---TLWSPWK-LQGEELIEGKQDALRLSLQEQ-EDAGIDIVS 58 (339)
T ss_pred ceecCCCCCHHHHHHH---HHHHcCC-CCHHHHHHHHHHHHHHHHHHH-HHhCCCcee
Confidence 6789999999888774 3344454 544555566666666666554 567887643
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.39 E-value=2.4e+02 Score=28.56 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc--hHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--HGLAALQWSICQDSL-HRPKEARIMYEKL 344 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--GGeaqLwLAiAydA~-GR~~EAiaLYkkL 344 (368)
+..+-.-|-++-..|.+++-.+||.-||+|+++.....++ +..--+.++--||+- ...+.||+-|++-
T Consensus 70 khDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~A 140 (288)
T KOG1586|consen 70 KHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQA 140 (288)
T ss_pred chhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455667888888999999999999999998887554433 233334555556654 5555555555543
No 321
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=20.39 E-value=1.3e+02 Score=25.51 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.0
Q ss_pred ccCccccccccCCCCCCccccCCC
Q 017641 212 YKPKVSTWGVFPRPGNISKTFGGG 235 (368)
Q Consensus 212 YKPkVsTWGvFPRP~NISkayGGG 235 (368)
+.++|-+||.|.++.+|..=||++
T Consensus 98 ~~~~v~~~~~~~~~~~i~DP~~~~ 121 (141)
T cd00115 98 GRAKVELLGEYAGDREVPDPYYGS 121 (141)
T ss_pred CcceEEeHhhhCcCCCCCCCCCCC
Confidence 357899999999888899999987
No 322
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.34 E-value=6.1e+02 Score=27.18 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHH-------------
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL------------- 322 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL------------- 322 (368)
...+.|..+-++.|+.++++....+-. +-.|.++.|+..|++..... ||.+.+
T Consensus 183 el~~~L~~~a~~egl~i~~eal~~La~--------~s~Gdlr~al~~LekL~~y~------~~~It~e~V~~ll~~s~~~ 248 (585)
T PRK14950 183 DMAAHLRKIAAAEGINLEPGALEAIAR--------AATGSMRDAENLLQQLATTY------GGEISLSQVQSLLGISGDE 248 (585)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHHhc------CCCCCHHHHHHHhcCCCHH
Confidence 445556666667799999876544322 23599999999999854431 222222
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHhc
Q 017641 323 ---QWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 323 ---wLAiAydA~GR~~EAiaLYkkL~s 346 (368)
.|.-+. ..|+.++|+.++..|..
T Consensus 249 ~vf~Lidal-~~~d~~~al~~l~~L~~ 274 (585)
T PRK14950 249 EVKALAEAL-LAKDLKAALRTLNAVAA 274 (585)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 122222 35789999999999964
No 323
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=20.25 E-value=4.3e+02 Score=23.86 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=38.9
Q ss_pred hhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH-H-hcCCCHHHHHHHHHH
Q 017641 299 ALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK-L-QSHPNALVSKRARQF 359 (368)
Q Consensus 299 AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk-L-~sHP~~eVrKQAkrL 359 (368)
|..+|.+|..++|.. |...-|||+-+-..|+.=+|+=-|-+ | .+||.+.-+..=..+
T Consensus 1 A~~~Y~~A~~l~P~~----G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN----GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTB----SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC----CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 678999999999876 88999999998888877777644433 3 378987655444333
Done!