Query 017641
Match_columns 368
No_of_seqs 67 out of 69
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 17:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 98.5 7.9E-07 2.7E-11 73.9 11.3 102 254-364 49-151 (151)
2 4gcn_A Protein STI-1; structur 98.5 1.1E-06 3.7E-11 69.0 9.9 102 253-359 20-125 (127)
3 2xev_A YBGF; tetratricopeptide 98.3 7E-06 2.4E-10 61.1 10.4 84 280-364 39-123 (129)
4 3k9i_A BH0479 protein; putativ 98.2 1.8E-05 6.2E-10 60.0 10.5 102 259-366 8-111 (117)
5 3ma5_A Tetratricopeptide repea 98.1 2.2E-05 7.5E-10 58.9 9.4 77 282-362 9-89 (100)
6 2l6j_A TPR repeat-containing p 98.1 4.3E-05 1.5E-09 55.2 10.1 67 280-350 4-71 (111)
7 3qky_A Outer membrane assembly 98.0 1.9E-05 6.7E-10 66.7 9.2 78 283-361 151-239 (261)
8 4gco_A Protein STI-1; structur 98.0 2.8E-05 9.6E-10 61.2 9.2 57 284-344 51-107 (126)
9 2v5f_A Prolyl 4-hydroxylase su 98.0 5.2E-05 1.8E-09 58.4 9.9 72 281-352 6-81 (104)
10 3rkv_A Putative peptidylprolyl 98.0 1.4E-05 4.9E-10 63.2 6.5 64 282-349 65-129 (162)
11 1elr_A TPR2A-domain of HOP; HO 97.9 8.2E-05 2.8E-09 54.0 9.9 84 281-364 39-126 (131)
12 2vgx_A Chaperone SYCD; alterna 97.9 7.1E-05 2.4E-09 60.2 10.4 102 255-365 35-141 (148)
13 2yhc_A BAMD, UPF0169 lipoprote 97.9 3.4E-05 1.2E-09 64.8 8.6 70 280-350 4-74 (225)
14 3upv_A Heat shock protein STI1 97.9 5.4E-05 1.9E-09 57.1 8.7 86 253-347 16-102 (126)
15 2xcb_A PCRH, regulatory protei 97.9 6.8E-05 2.3E-09 58.6 9.5 100 255-363 32-136 (142)
16 2xev_A YBGF; tetratricopeptide 97.9 5.5E-05 1.9E-09 56.2 8.5 68 282-350 4-72 (129)
17 4gcn_A Protein STI-1; structur 97.9 7.7E-05 2.6E-09 58.4 9.2 64 278-345 6-69 (127)
18 2dba_A Smooth muscle cell asso 97.8 0.00036 1.2E-08 52.2 12.2 96 254-355 41-138 (148)
19 4ga2_A E3 SUMO-protein ligase 97.8 0.00019 6.6E-09 57.4 10.6 85 256-349 12-97 (150)
20 2kck_A TPR repeat; tetratricop 97.8 0.00015 5.1E-09 51.4 8.6 66 282-349 42-109 (112)
21 2kc7_A BFR218_protein; tetratr 97.8 7E-05 2.4E-09 54.2 6.8 63 283-349 3-67 (99)
22 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00014 4.9E-09 57.6 9.1 83 254-345 24-106 (164)
23 3qky_A Outer membrane assembly 97.7 0.00015 5.2E-09 61.2 9.6 69 280-349 15-84 (261)
24 1na3_A Designed protein CTPR2; 97.7 0.00053 1.8E-08 47.8 10.7 67 280-350 9-76 (91)
25 3gyz_A Chaperone protein IPGC; 97.7 0.00014 4.7E-09 60.3 8.6 72 271-349 30-102 (151)
26 2xcb_A PCRH, regulatory protei 97.7 0.00026 9E-09 55.3 9.6 74 269-349 10-84 (142)
27 2kat_A Uncharacterized protein 97.7 0.00049 1.7E-08 51.3 10.7 76 261-345 5-80 (115)
28 1elw_A TPR1-domain of HOP; HOP 97.7 0.00021 7E-09 50.9 8.1 85 256-349 19-104 (118)
29 2vgx_A Chaperone SYCD; alterna 97.7 0.00024 8.3E-09 57.1 9.4 73 270-349 14-87 (148)
30 1a17_A Serine/threonine protei 97.6 0.00039 1.3E-08 53.0 9.8 65 282-350 49-114 (166)
31 2yhc_A BAMD, UPF0169 lipoprote 97.6 0.00052 1.8E-08 57.6 11.5 65 284-349 151-216 (225)
32 1elr_A TPR2A-domain of HOP; HO 97.6 0.00031 1E-08 50.9 8.6 63 279-345 3-65 (131)
33 3q49_B STIP1 homology and U bo 97.6 0.0003 1E-08 52.7 8.8 83 254-345 22-104 (137)
34 3upv_A Heat shock protein STI1 97.6 0.00052 1.8E-08 51.6 9.9 67 279-349 3-70 (126)
35 2lni_A Stress-induced-phosphop 97.6 0.00031 1.1E-08 51.4 8.2 88 254-350 29-117 (133)
36 1hxi_A PEX5, peroxisome target 97.6 0.00013 4.5E-09 56.8 6.4 88 253-349 29-117 (121)
37 4gco_A Protein STI-1; structur 97.6 0.00067 2.3E-08 53.2 10.5 72 271-349 7-79 (126)
38 2dba_A Smooth muscle cell asso 97.6 0.00028 9.5E-09 52.8 7.8 69 280-349 28-97 (148)
39 2fbn_A 70 kDa peptidylprolyl i 97.5 0.00041 1.4E-08 56.5 9.1 73 277-349 35-120 (198)
40 2vyi_A SGTA protein; chaperone 97.5 0.00088 3E-08 48.3 9.7 64 282-349 48-112 (131)
41 2kck_A TPR repeat; tetratricop 97.5 0.00077 2.6E-08 47.6 9.2 63 283-349 9-72 (112)
42 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0013 4.4E-08 52.0 11.3 69 277-349 8-77 (164)
43 2lni_A Stress-induced-phosphop 97.5 0.0018 6.2E-08 47.3 11.2 68 278-349 14-82 (133)
44 1hxi_A PEX5, peroxisome target 97.5 0.00042 1.4E-08 53.9 8.1 65 281-349 18-83 (121)
45 2hr2_A Hypothetical protein; a 97.5 0.00024 8.1E-09 62.0 7.4 70 277-346 8-86 (159)
46 3urz_A Uncharacterized protein 97.5 0.0003 1E-08 58.7 7.7 67 280-350 4-87 (208)
47 4i17_A Hypothetical protein; T 97.4 0.00097 3.3E-08 54.8 10.3 58 283-344 10-68 (228)
48 3vtx_A MAMA; tetratricopeptide 97.4 0.0009 3.1E-08 53.0 9.4 64 283-350 8-72 (184)
49 1elw_A TPR1-domain of HOP; HOP 97.4 0.0022 7.5E-08 45.5 10.3 67 279-349 3-70 (118)
50 3qwp_A SET and MYND domain-con 97.4 0.0004 1.4E-08 67.3 8.4 125 217-344 194-355 (429)
51 2pl2_A Hypothetical conserved 97.4 0.0011 3.9E-08 55.5 10.1 86 255-350 98-184 (217)
52 3q49_B STIP1 homology and U bo 97.4 0.0011 3.7E-08 49.7 8.9 66 280-349 9-75 (137)
53 2vyi_A SGTA protein; chaperone 97.3 0.0026 8.8E-08 45.8 10.4 69 277-349 9-78 (131)
54 3vtx_A MAMA; tetratricopeptide 97.3 0.00096 3.3E-08 52.8 8.5 63 283-349 110-173 (184)
55 3ro2_A PINS homolog, G-protein 97.3 0.00078 2.7E-08 55.6 8.0 64 282-345 45-110 (338)
56 3rkv_A Putative peptidylprolyl 97.3 0.0016 5.5E-08 51.3 9.5 57 293-349 24-95 (162)
57 3ieg_A DNAJ homolog subfamily 97.3 0.002 6.7E-08 54.3 10.4 62 284-345 238-299 (359)
58 1a17_A Serine/threonine protei 97.3 0.004 1.4E-07 47.3 11.1 72 274-349 7-79 (166)
59 1na0_A Designed protein CTPR3; 97.3 0.0039 1.3E-07 44.5 10.4 65 282-350 45-110 (125)
60 4a1s_A PINS, partner of inscut 97.2 0.00086 2.9E-08 59.1 8.1 67 278-344 46-112 (411)
61 3urz_A Uncharacterized protein 97.2 0.003 1E-07 52.6 10.8 62 285-350 59-121 (208)
62 1na0_A Designed protein CTPR3; 97.2 0.0025 8.7E-08 45.4 9.0 65 281-349 10-75 (125)
63 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.003 1E-07 50.8 10.4 90 257-351 53-155 (213)
64 2fbn_A 70 kDa peptidylprolyl i 97.2 0.0035 1.2E-07 51.0 10.9 74 281-358 89-164 (198)
65 3uq3_A Heat shock protein STI1 97.2 0.0017 5.7E-08 52.5 8.5 63 278-345 3-65 (258)
66 3ro3_A PINS homolog, G-protein 97.2 0.0019 6.3E-08 47.8 8.0 65 281-345 50-116 (164)
67 3sf4_A G-protein-signaling mod 97.1 0.0013 4.4E-08 56.9 8.0 88 256-345 24-114 (406)
68 1ihg_A Cyclophilin 40; ppiase 97.1 0.0011 3.9E-08 61.9 8.2 75 282-360 275-351 (370)
69 4abn_A Tetratricopeptide repea 97.1 0.0076 2.6E-07 57.3 13.8 75 281-359 103-179 (474)
70 2gw1_A Mitochondrial precursor 97.1 0.0019 6.5E-08 57.9 8.9 81 255-345 20-100 (514)
71 2c2l_A CHIP, carboxy terminus 97.1 0.0021 7.2E-08 56.7 9.1 81 255-344 18-98 (281)
72 4f3v_A ESX-1 secretion system 97.1 0.0033 1.1E-07 59.1 10.8 99 251-353 145-244 (282)
73 3u4t_A TPR repeat-containing p 97.1 0.0018 6.1E-08 53.5 7.9 66 283-349 40-106 (272)
74 3qou_A Protein YBBN; thioredox 97.1 0.0022 7.5E-08 56.5 9.0 71 280-354 117-188 (287)
75 2pl2_A Hypothetical conserved 97.0 0.0022 7.5E-08 53.8 8.4 65 282-350 7-72 (217)
76 3ieg_A DNAJ homolog subfamily 97.0 0.0028 9.5E-08 53.4 8.7 85 255-348 17-102 (359)
77 3uq3_A Heat shock protein STI1 97.0 0.0029 9.8E-08 51.1 8.4 95 257-357 21-119 (258)
78 1xnf_A Lipoprotein NLPI; TPR, 97.0 0.0087 3E-07 49.1 11.4 59 282-344 45-103 (275)
79 3edt_B KLC 2, kinesin light ch 97.0 0.0057 1.9E-07 49.7 10.1 69 278-346 83-155 (283)
80 1p5q_A FKBP52, FK506-binding p 97.0 0.002 6.8E-08 58.6 8.2 93 254-350 160-263 (336)
81 2y4t_A DNAJ homolog subfamily 97.0 0.0023 7.8E-08 56.9 8.3 67 283-349 260-327 (450)
82 2if4_A ATFKBP42; FKBP-like, al 97.0 0.0015 5E-08 59.6 7.3 73 277-349 176-262 (338)
83 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.002 6.8E-08 61.4 8.3 63 282-348 319-382 (457)
84 2hr2_A Hypothetical protein; a 97.0 0.0025 8.7E-08 55.5 8.3 92 252-345 22-129 (159)
85 4i17_A Hypothetical protein; T 96.9 0.0074 2.5E-07 49.5 10.6 87 258-349 59-149 (228)
86 3ro3_A PINS homolog, G-protein 96.9 0.0035 1.2E-07 46.3 7.7 63 283-345 92-156 (164)
87 3u4t_A TPR repeat-containing p 96.9 0.0021 7.2E-08 53.1 7.1 63 282-348 5-67 (272)
88 3as5_A MAMA; tetratricopeptide 96.9 0.0049 1.7E-07 46.8 8.5 56 285-344 115-170 (186)
89 1p5q_A FKBP52, FK506-binding p 96.9 0.0067 2.3E-07 55.1 10.9 60 282-345 232-292 (336)
90 2r5s_A Uncharacterized protein 96.9 0.0016 5.6E-08 52.3 6.2 68 281-352 7-75 (176)
91 1hh8_A P67PHOX, NCF-2, neutrop 96.9 0.0021 7.1E-08 51.7 6.7 85 254-350 19-104 (213)
92 2qfc_A PLCR protein; TPR, HTH, 96.9 0.0058 2E-07 53.1 10.0 67 279-345 154-223 (293)
93 3edt_B KLC 2, kinesin light ch 96.9 0.0045 1.5E-07 50.3 8.7 68 278-345 125-196 (283)
94 3fp2_A TPR repeat-containing p 96.9 0.0029 9.8E-08 57.5 8.4 62 279-344 24-85 (537)
95 3nf1_A KLC 1, kinesin light ch 96.9 0.0038 1.3E-07 51.9 8.4 69 277-345 24-96 (311)
96 2vq2_A PILW, putative fimbrial 96.9 0.006 2.1E-07 48.2 9.1 63 280-346 42-105 (225)
97 2ifu_A Gamma-SNAP; membrane fu 96.8 0.0024 8.2E-08 56.4 7.4 72 278-349 153-226 (307)
98 1ihg_A Cyclophilin 40; ppiase 96.8 0.005 1.7E-07 57.5 9.8 58 292-349 235-305 (370)
99 2fo7_A Synthetic consensus TPR 96.8 0.0077 2.6E-07 43.0 8.7 59 283-345 38-96 (136)
100 2vq2_A PILW, putative fimbrial 96.8 0.0096 3.3E-07 47.0 10.1 64 281-348 114-178 (225)
101 1qqe_A Vesicular transport pro 96.8 0.004 1.4E-07 54.6 8.3 72 280-351 158-233 (292)
102 3as5_A MAMA; tetratricopeptide 96.8 0.012 4E-07 44.7 9.8 58 283-344 45-102 (186)
103 2ho1_A Type 4 fimbrial biogene 96.8 0.007 2.4E-07 49.6 9.0 60 283-346 74-133 (252)
104 4eqf_A PEX5-related protein; a 96.8 0.0036 1.2E-07 54.5 7.7 90 251-349 75-165 (365)
105 2ho1_A Type 4 fimbrial biogene 96.7 0.019 6.4E-07 47.0 11.5 65 281-349 142-207 (252)
106 3nf1_A KLC 1, kinesin light ch 96.7 0.011 3.8E-07 49.1 10.0 68 278-345 151-222 (311)
107 1xnf_A Lipoprotein NLPI; TPR, 96.7 0.013 4.5E-07 48.0 10.2 65 283-351 80-145 (275)
108 2fo7_A Synthetic consensus TPR 96.7 0.0066 2.2E-07 43.4 7.3 63 283-349 4-67 (136)
109 2e2e_A Formate-dependent nitri 96.7 0.011 3.7E-07 46.8 9.2 64 283-350 81-148 (177)
110 2l6j_A TPR repeat-containing p 96.7 0.00035 1.2E-08 50.3 0.5 85 256-345 19-105 (111)
111 1zu2_A Mitochondrial import re 96.6 0.0077 2.6E-07 52.5 9.0 101 250-359 11-133 (158)
112 4gyw_A UDP-N-acetylglucosamine 96.6 0.0054 1.8E-07 63.4 9.3 85 256-349 58-143 (723)
113 2q7f_A YRRB protein; TPR, prot 96.6 0.0074 2.5E-07 48.6 8.2 73 282-358 161-234 (243)
114 2e2e_A Formate-dependent nitri 96.6 0.0086 2.9E-07 47.3 8.4 64 282-349 46-113 (177)
115 3gw4_A Uncharacterized protein 96.6 0.0075 2.6E-07 47.5 7.9 68 278-345 64-134 (203)
116 3gw4_A Uncharacterized protein 96.6 0.0077 2.6E-07 47.5 7.8 80 278-357 105-190 (203)
117 4gyw_A UDP-N-acetylglucosamine 96.6 0.0063 2.2E-07 62.9 9.1 88 254-350 22-110 (723)
118 4eqf_A PEX5-related protein; a 96.5 0.01 3.5E-07 51.7 9.1 67 280-350 65-132 (365)
119 2y4t_A DNAJ homolog subfamily 96.5 0.01 3.4E-07 52.8 9.1 68 280-351 60-128 (450)
120 2vsy_A XCC0866; transferase, g 96.5 0.013 4.4E-07 56.0 10.5 87 254-349 36-123 (568)
121 1fch_A Peroxisomal targeting s 96.5 0.024 8.1E-07 48.8 11.2 90 253-349 193-283 (368)
122 4ga2_A E3 SUMO-protein ligase 96.5 0.013 4.3E-07 46.8 8.8 89 257-354 47-138 (150)
123 1kt0_A FKBP51, 51 kDa FK506-bi 96.5 0.012 4E-07 56.1 9.7 59 283-345 354-413 (457)
124 2q7f_A YRRB protein; TPR, prot 96.5 0.014 4.9E-07 46.9 8.8 62 283-348 94-156 (243)
125 4abn_A Tetratricopeptide repea 96.4 0.028 9.7E-07 53.4 12.2 92 253-350 191-291 (474)
126 3u3w_A Transcriptional activat 96.4 0.025 8.7E-07 49.0 10.9 90 256-345 90-182 (293)
127 2r5s_A Uncharacterized protein 96.4 0.0074 2.5E-07 48.5 6.9 59 283-343 111-169 (176)
128 3ffl_A Anaphase-promoting comp 96.4 0.0097 3.3E-07 53.1 8.2 77 277-353 60-158 (167)
129 3cv0_A Peroxisome targeting si 96.4 0.01 3.5E-07 49.6 7.9 89 252-349 32-121 (327)
130 3qww_A SET and MYND domain-con 96.4 0.019 6.4E-07 56.1 10.9 67 278-344 338-408 (433)
131 3hym_B Cell division cycle pro 96.4 0.022 7.4E-07 47.7 9.8 68 282-349 195-268 (330)
132 3k9i_A BH0479 protein; putativ 96.4 0.0043 1.5E-07 46.7 4.9 58 292-350 2-60 (117)
133 1qqe_A Vesicular transport pro 96.3 0.011 3.7E-07 51.8 8.1 67 279-345 76-145 (292)
134 1fch_A Peroxisomal targeting s 96.3 0.011 3.8E-07 50.9 7.9 90 252-350 75-165 (368)
135 2c2l_A CHIP, carboxy terminus 96.3 0.01 3.4E-07 52.3 7.8 67 280-350 4-71 (281)
136 3qwp_A SET and MYND domain-con 96.3 0.02 6.7E-07 55.5 10.4 72 273-344 322-397 (429)
137 1wao_1 Serine/threonine protei 96.3 0.01 3.5E-07 57.1 8.4 85 257-350 22-107 (477)
138 3u3w_A Transcriptional activat 96.3 0.017 5.9E-07 50.1 8.9 68 278-345 153-223 (293)
139 3qou_A Protein YBBN; thioredox 96.3 0.0091 3.1E-07 52.6 7.3 90 252-350 162-252 (287)
140 3mkr_A Coatomer subunit epsilo 96.3 0.015 5.1E-07 51.8 8.6 55 290-348 176-231 (291)
141 3cv0_A Peroxisome targeting si 96.2 0.024 8.1E-07 47.4 9.0 65 281-349 22-87 (327)
142 3hym_B Cell division cycle pro 96.2 0.012 4.2E-07 49.2 7.2 64 282-349 238-302 (330)
143 3n71_A Histone lysine methyltr 96.2 0.015 5.2E-07 57.6 9.0 67 278-344 307-377 (490)
144 1w3b_A UDP-N-acetylglucosamine 96.1 0.028 9.6E-07 49.5 9.5 57 284-344 275-331 (388)
145 3ro2_A PINS homolog, G-protein 96.1 0.012 3.9E-07 48.6 6.6 65 280-344 223-289 (338)
146 1ouv_A Conserved hypothetical 96.1 0.044 1.5E-06 46.1 10.3 65 282-352 40-112 (273)
147 4a1s_A PINS, partner of inscut 96.0 0.063 2.1E-06 47.2 11.3 68 278-345 221-290 (411)
148 1wao_1 Serine/threonine protei 96.0 0.0042 1.4E-07 59.9 4.2 68 279-350 5-73 (477)
149 2if4_A ATFKBP42; FKBP-like, al 96.0 0.014 4.8E-07 53.2 7.4 64 282-349 232-296 (338)
150 3mkr_A Coatomer subunit epsilo 96.0 0.028 9.5E-07 50.0 9.1 59 283-350 104-163 (291)
151 3ulq_A Response regulator aspa 96.0 0.031 1.1E-06 49.8 9.4 90 256-345 118-211 (383)
152 4b4t_Q 26S proteasome regulato 96.0 0.024 8.3E-07 50.4 8.5 63 283-345 7-82 (434)
153 2ifu_A Gamma-SNAP; membrane fu 95.9 0.021 7.2E-07 50.3 7.9 64 281-345 117-182 (307)
154 2vsy_A XCC0866; transferase, g 95.9 0.02 6.8E-07 54.6 8.2 84 258-350 6-90 (568)
155 2qfc_A PLCR protein; TPR, HTH, 95.9 0.053 1.8E-06 47.0 10.2 67 279-345 114-182 (293)
156 3sf4_A G-protein-signaling mod 95.9 0.017 6E-07 49.8 7.0 66 280-345 267-334 (406)
157 1w3b_A UDP-N-acetylglucosamine 95.8 0.027 9.3E-07 49.6 8.2 63 283-349 308-371 (388)
158 3q15_A PSP28, response regulat 95.8 0.021 7.2E-07 51.1 7.5 66 279-344 181-248 (378)
159 3n71_A Histone lysine methyltr 95.8 0.05 1.7E-06 54.0 10.8 68 277-344 348-419 (490)
160 2gw1_A Mitochondrial precursor 95.8 0.048 1.7E-06 48.8 9.7 77 282-362 414-494 (514)
161 3fp2_A TPR repeat-containing p 95.8 0.1 3.5E-06 47.3 11.8 91 254-349 215-308 (537)
162 3qww_A SET and MYND domain-con 95.7 0.031 1.1E-06 54.6 8.9 65 280-344 298-366 (433)
163 3ulq_A Response regulator aspa 95.7 0.031 1.1E-06 49.8 8.0 67 279-345 183-251 (383)
164 3q15_A PSP28, response regulat 95.7 0.072 2.4E-06 47.6 10.4 89 257-345 117-209 (378)
165 2xpi_A Anaphase-promoting comp 95.5 0.067 2.3E-06 49.6 9.6 64 283-350 519-583 (597)
166 1ouv_A Conserved hypothetical 95.4 0.12 4.1E-06 43.5 10.3 65 282-352 76-148 (273)
167 2pzi_A Probable serine/threoni 95.4 0.04 1.4E-06 55.2 8.4 64 282-349 435-499 (681)
168 4g1t_A Interferon-induced prot 95.3 0.032 1.1E-06 50.2 6.7 61 285-345 56-121 (472)
169 1hz4_A MALT regulatory protein 95.2 0.099 3.4E-06 45.9 9.5 67 279-345 52-120 (373)
170 1hz4_A MALT regulatory protein 95.2 0.057 2E-06 47.4 7.8 67 279-345 92-162 (373)
171 2h6f_A Protein farnesyltransfe 95.2 0.032 1.1E-06 52.8 6.7 63 283-349 169-232 (382)
172 3rjv_A Putative SEL1 repeat pr 95.1 0.1 3.4E-06 43.8 8.8 58 282-346 20-81 (212)
173 2pzi_A Probable serine/threoni 94.9 0.046 1.6E-06 54.8 7.1 93 253-350 445-567 (681)
174 2h6f_A Protein farnesyltransfe 94.9 0.096 3.3E-06 49.5 8.9 84 257-349 113-198 (382)
175 4f3v_A ESX-1 secretion system 94.6 0.04 1.4E-06 51.7 5.6 65 282-348 137-201 (282)
176 2ff4_A Probable regulatory pro 94.5 0.22 7.7E-06 47.3 10.7 130 226-360 91-255 (388)
177 2ond_A Cleavage stimulation fa 94.4 0.23 7.7E-06 43.5 9.6 82 258-346 81-162 (308)
178 2xpi_A Anaphase-promoting comp 94.0 0.16 5.6E-06 47.0 8.3 65 285-349 480-548 (597)
179 2ond_A Cleavage stimulation fa 94.0 0.78 2.7E-05 40.1 12.2 50 293-346 182-231 (308)
180 1klx_A Cysteine rich protein B 93.8 0.34 1.2E-05 38.4 8.8 64 281-350 58-129 (138)
181 2kat_A Uncharacterized protein 93.4 0.16 5.5E-06 37.5 5.8 50 297-350 2-52 (115)
182 4b4t_Q 26S proteasome regulato 93.2 0.31 1.1E-05 43.3 8.3 66 280-345 135-202 (434)
183 3rjv_A Putative SEL1 repeat pr 93.2 1.4 4.8E-05 36.7 11.9 71 280-355 125-205 (212)
184 1na3_A Designed protein CTPR2; 93.2 0.29 9.8E-06 33.7 6.5 68 256-332 24-91 (91)
185 3bee_A Putative YFRE protein; 92.9 0.65 2.2E-05 35.7 8.8 63 283-349 9-75 (93)
186 2kc7_A BFR218_protein; tetratr 92.7 0.12 4.1E-06 36.9 4.1 77 253-345 12-88 (99)
187 4g1t_A Interferon-induced prot 92.4 0.38 1.3E-05 43.2 7.8 60 289-352 222-282 (472)
188 3bee_A Putative YFRE protein; 92.2 0.54 1.8E-05 36.2 7.5 38 283-321 46-83 (93)
189 1klx_A Cysteine rich protein B 91.5 1.3 4.4E-05 35.1 9.2 59 286-350 31-93 (138)
190 2ooe_A Cleavage stimulation fa 91.1 1.5 5E-05 41.3 10.6 59 291-353 23-82 (530)
191 2ooe_A Cleavage stimulation fa 90.3 0.65 2.2E-05 43.7 7.4 51 293-346 292-349 (530)
192 1pc2_A Mitochondria fission pr 90.2 2.3 7.9E-05 36.9 10.3 75 281-360 33-111 (152)
193 2xm6_A Protein corresponding t 89.1 2.5 8.5E-05 39.3 10.3 64 282-351 77-148 (490)
194 2xm6_A Protein corresponding t 89.1 2.5 8.5E-05 39.3 10.3 58 286-349 189-254 (490)
195 3mv2_B Coatomer subunit epsilo 87.4 2.6 8.9E-05 40.1 9.4 65 282-348 102-167 (310)
196 3ly7_A Transcriptional activat 87.2 1.7 5.7E-05 42.8 8.1 68 289-361 286-354 (372)
197 2ff4_A Probable regulatory pro 87.1 3.8 0.00013 38.8 10.4 75 277-352 112-206 (388)
198 1b89_A Protein (clathrin heavy 86.5 1 3.4E-05 45.3 6.3 64 282-345 150-234 (449)
199 3ma5_A Tetratricopeptide repea 85.9 1.1 3.8E-05 32.9 4.8 57 256-317 22-78 (100)
200 1b89_A Protein (clathrin heavy 84.3 1 3.5E-05 45.2 5.2 51 282-344 124-174 (449)
201 2ijq_A Hypothetical protein; s 83.2 3.3 0.00011 36.5 7.4 66 279-344 31-101 (161)
202 2cwy_A Hypothetical protein TT 82.2 1.7 5.9E-05 34.8 4.8 60 283-344 4-65 (94)
203 3e4b_A ALGK; tetratricopeptide 82.1 0.36 1.2E-05 45.6 0.8 85 251-349 13-107 (452)
204 3e4b_A ALGK; tetratricopeptide 81.2 3.1 0.00011 39.2 6.9 48 291-345 262-314 (452)
205 3dss_A Geranylgeranyl transfer 80.5 6.7 0.00023 37.3 8.9 98 245-348 10-141 (331)
206 1xi4_A Clathrin heavy chain; a 80.1 3.7 0.00013 47.4 8.1 62 283-344 1137-1221(1630)
207 3ffl_A Anaphase-promoting comp 79.4 4.7 0.00016 35.9 7.0 61 283-343 23-88 (167)
208 1qsa_A Protein (soluble lytic 79.1 3.6 0.00012 42.3 7.1 55 289-347 294-348 (618)
209 2vkj_A TM1634; membrane protei 77.4 5.8 0.0002 33.2 6.5 49 261-309 31-82 (106)
210 1zu2_A Mitochondrial import re 73.1 5.3 0.00018 34.6 5.5 53 256-313 61-124 (158)
211 1xi4_A Clathrin heavy chain; a 72.3 5.4 0.00019 46.1 6.7 51 282-344 1197-1247(1630)
212 3mv2_B Coatomer subunit epsilo 71.2 9.7 0.00033 36.1 7.3 62 282-348 178-242 (310)
213 3dra_A Protein farnesyltransfe 68.3 64 0.0022 29.8 12.0 74 271-348 47-141 (306)
214 3iqc_A FLIS, flagellar protein 68.2 13 0.00044 31.3 6.7 57 277-333 33-94 (131)
215 4e6h_A MRNA 3'-END-processing 68.0 10 0.00035 39.2 7.2 56 287-346 350-406 (679)
216 2p58_C Putative type III secre 66.7 9.7 0.00033 32.5 5.5 73 278-360 39-111 (116)
217 1orj_A Flagellar protein FLIS; 65.8 8.5 0.00029 32.5 5.1 71 262-332 6-90 (130)
218 3dra_A Protein farnesyltransfe 65.2 20 0.0007 33.2 8.0 69 278-350 30-102 (306)
219 2qx5_A Nucleoporin NIC96; mRNA 65.2 23 0.00079 37.1 9.2 93 258-360 512-636 (661)
220 2uwj_G Type III export protein 64.5 9.5 0.00033 32.5 5.1 73 278-360 38-110 (115)
221 2v5f_A Prolyl 4-hydroxylase su 64.3 21 0.00073 26.7 6.7 34 283-316 49-82 (104)
222 1dce_A Protein (RAB geranylger 62.6 54 0.0018 32.6 11.0 87 255-349 29-141 (567)
223 3mkq_A Coatomer beta'-subunit; 60.3 7.2 0.00025 37.7 4.1 61 285-346 686-764 (814)
224 3ax2_A Mitochondrial import re 60.0 11 0.00037 29.5 4.4 39 278-316 15-53 (73)
225 2hsb_A Hypothetical UPF0332 pr 57.7 10 0.00035 29.9 4.0 33 274-306 6-38 (126)
226 1vh6_A Flagellar protein FLIS; 56.4 16 0.00054 31.4 5.2 74 260-333 8-89 (145)
227 1dce_A Protein (RAB geranylger 54.2 5.7 0.0002 39.6 2.4 61 285-349 33-105 (567)
228 1om2_A Protein (mitochondrial 53.6 13 0.00043 30.5 3.9 45 273-317 12-57 (95)
229 3shg_B VBHA; ampylation, adeny 49.6 28 0.00096 26.8 5.0 36 246-282 3-38 (61)
230 2v6x_A Vacuolar protein sortin 49.0 26 0.00088 26.8 4.9 35 276-310 9-43 (85)
231 1wjt_A Transcription elongatio 47.4 29 0.00099 28.3 5.2 28 338-366 57-85 (103)
232 2w2u_A Hypothetical P60 katani 45.6 27 0.00092 27.3 4.5 33 277-309 16-48 (83)
233 2cpt_A SKD1 protein, vacuolar 44.5 22 0.00076 29.4 4.1 36 276-311 14-49 (117)
234 4a5x_A MITD1, MIT domain-conta 44.4 25 0.00087 27.5 4.2 31 280-310 16-46 (86)
235 4fm3_A Uncharacterized hypothe 44.4 68 0.0023 26.4 6.9 52 255-307 10-61 (98)
236 2v6y_A AAA family ATPase, P60 43.6 29 0.001 26.8 4.5 32 278-309 9-40 (83)
237 2v6y_A AAA family ATPase, P60 43.1 20 0.00067 27.8 3.4 22 322-343 15-36 (83)
238 2w2u_A Hypothetical P60 katani 42.6 26 0.00089 27.4 4.0 22 322-343 23-44 (83)
239 2cfu_A SDSA1; SDS-hydrolase, l 41.3 17 0.00058 37.4 3.5 52 281-336 450-501 (658)
240 3txn_A 26S proteasome regulato 40.4 77 0.0026 31.0 7.8 61 285-345 104-166 (394)
241 1wfd_A Hypothetical protein 15 40.2 43 0.0015 26.4 5.0 37 274-310 9-45 (93)
242 4h7y_A Dual specificity protei 40.0 15 0.00052 32.8 2.6 79 271-352 7-93 (161)
243 4b4t_R RPN7, 26S proteasome re 39.0 1.2E+02 0.0039 29.1 8.7 90 256-353 112-207 (429)
244 3lpz_A GET4 (YOR164C homolog); 38.7 56 0.0019 31.7 6.5 73 253-332 11-89 (336)
245 2rpa_A Katanin P60 ATPase-cont 37.5 31 0.0011 27.2 3.7 36 278-313 10-45 (78)
246 3efz_A 14-3-3 protein; 14-3-3, 36.5 1.7E+02 0.0058 27.8 9.3 85 256-344 101-223 (268)
247 3q7a_A Farnesyltransferase alp 36.1 1.3E+02 0.0044 28.8 8.5 73 271-349 68-157 (349)
248 1wol_A ST0689, 122AA long cons 36.1 42 0.0014 26.6 4.4 35 276-310 7-41 (122)
249 3zwl_E Eukaryotic translation 35.9 33 0.0011 25.2 3.4 28 248-275 22-49 (50)
250 3u64_A Protein TP_0956; tetrat 35.2 2.4E+02 0.0082 27.1 10.2 86 271-361 191-293 (301)
251 1nzn_A CGI-135 protein, fissio 34.8 1.4E+02 0.0047 25.1 7.6 76 283-363 38-117 (126)
252 2wpv_A GET4, UPF0363 protein Y 34.4 74 0.0025 30.3 6.5 75 253-334 12-89 (312)
253 1wy6_A Hypothetical protein ST 34.3 60 0.0021 29.2 5.5 58 290-351 101-158 (172)
254 1ufb_A TT1696 protein; structu 33.6 42 0.0014 26.5 4.0 69 276-345 7-83 (127)
255 2bn5_A PSI; nuclear protein, s 33.3 49 0.0017 22.8 3.6 27 322-348 6-32 (33)
256 1o3u_A Conserved hypothetical 32.6 47 0.0016 27.1 4.2 68 277-345 13-88 (135)
257 2crb_A Nuclear receptor bindin 31.3 75 0.0026 26.4 5.2 28 285-312 20-47 (97)
258 3mkq_A Coatomer beta'-subunit; 30.3 1.2E+02 0.004 29.4 7.2 63 287-361 730-795 (814)
259 4a5x_A MITD1, MIT domain-conta 30.1 54 0.0018 25.6 4.0 35 321-355 19-61 (86)
260 3mkr_B Coatomer subunit alpha; 29.0 66 0.0023 31.2 5.2 42 272-313 94-135 (320)
261 3u64_A Protein TP_0956; tetrat 28.9 70 0.0024 30.8 5.3 54 295-350 178-237 (301)
262 3l9t_A Putative uncharacterize 28.9 1.2E+02 0.0042 28.3 6.9 71 286-360 25-95 (240)
263 1te4_A Conserved protein MTH18 28.4 2E+02 0.0068 22.0 7.4 57 297-360 72-128 (131)
264 1ya0_A SMG-7 transcript varian 28.0 2.6E+02 0.009 28.0 9.5 70 283-356 155-226 (497)
265 3mkq_B Coatomer subunit alpha; 27.5 37 0.0013 30.1 2.9 63 285-348 39-119 (177)
266 4ffb_C Protein STU2; tubulin f 26.8 2.6E+02 0.009 24.3 8.3 47 315-361 154-208 (278)
267 2yhe_A SEC-alkyl sulfatase; hy 32.3 14 0.00048 38.5 0.0 54 280-337 461-514 (668)
268 3mv2_A Coatomer subunit alpha; 26.3 68 0.0023 31.3 4.8 42 271-313 106-147 (325)
269 2v6x_A Vacuolar protein sortin 26.2 71 0.0024 24.3 4.0 31 324-354 19-57 (85)
270 1wfd_A Hypothetical protein 15 26.2 69 0.0024 25.2 4.0 32 323-354 20-59 (93)
271 3u61_B DNA polymerase accessor 25.6 3.2E+02 0.011 24.1 8.7 100 246-353 166-271 (324)
272 3rpd_A Methionine synthase (B1 25.1 1.2E+02 0.004 29.1 6.1 56 215-275 19-74 (357)
273 4g26_A Pentatricopeptide repea 25.0 4.8E+02 0.017 25.3 11.5 78 267-353 133-213 (501)
274 4fx5_A VON willebrand factor t 23.3 82 0.0028 31.0 4.8 35 277-311 379-413 (464)
275 1y8m_A FIS1; mitochondria, unk 23.0 3.1E+02 0.011 23.7 7.9 63 294-362 56-119 (144)
276 4e6h_A MRNA 3'-END-processing 22.8 4.1E+02 0.014 27.3 10.1 51 294-348 484-535 (679)
277 3dss_A Geranylgeranyl transfer 21.9 2.7E+02 0.0091 26.3 7.9 92 255-351 207-309 (331)
278 1jr3_A DNA polymerase III subu 21.7 4E+02 0.014 23.5 8.6 81 257-346 183-273 (373)
279 3ltm_A Alpha-REP4; protein eng 21.5 1.3E+02 0.0043 24.5 4.9 60 297-363 142-201 (211)
280 3ph0_C ASCG; type III secretio 21.2 39 0.0013 26.0 1.6 15 286-300 46-60 (61)
281 2cpt_A SKD1 protein, vacuolar 20.6 86 0.0029 25.9 3.7 19 325-343 25-43 (117)
282 1elk_A Target of MYB1; superhe 20.5 1.8E+02 0.0063 24.5 5.9 61 301-361 19-79 (157)
283 3t5x_A PCI domain-containing p 20.3 2.2E+02 0.0074 24.9 6.5 58 277-334 11-69 (203)
284 2i88_A Colicin-E1; protein-mem 20.3 54 0.0019 30.0 2.6 70 284-358 2-79 (191)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=7.9e-07 Score=73.87 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
..+..+.+..|++-. .++|.... --+..|..++..|+|.+|+..|++|+.+-|... .+.+.++.||..+|+
T Consensus 49 ~g~~~eA~~~~~~al--~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLC--IYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVFHTGQCQLRLKA 119 (151)
T ss_dssp TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCC
Confidence 345566667776544 45555433 356679999999999999999999999887654 578899999999999
Q ss_pred hHHHHHHHHHHh-cCCCHHHHHHHHHHhhhhh
Q 017641 334 PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ 364 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE 364 (368)
.++|+..|++.. ..|+..++++|+.+|-.++
T Consensus 120 ~~eA~~~~~~al~l~~~~~~~~~A~~ll~~l~ 151 (151)
T 3gyz_A 120 PLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151 (151)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999999999985 7999999999999998764
No 2
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=1.1e-06 Score=68.99 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc---hHHHHHHHHHHHH
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQD 329 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L---GGeaqLwLAiAyd 329 (368)
+..+..+.+..|.+-. +++|... ..-+..|..++..|+|.+|+..|++|+++-+..... -+.+...++.||.
T Consensus 20 ~~~~~~~A~~~y~~Al--~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 20 KQKDFEKAHVHYDKAI--ELDPSNI---TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3446678888887654 6677653 335678999999999999999999999987655432 2667788999999
Q ss_pred hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 017641 330 SLHRPKEARIMYEKL-QSHPNALVSKRARQF 359 (368)
Q Consensus 330 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL 359 (368)
+.|+.++|+..|++- ..||++++.++-++|
T Consensus 95 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l 125 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence 999999999999985 579999998876554
No 3
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.29 E-value=7e-06 Score=61.13 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 358 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 358 (368)
.+..+..|..++..|+|.+|+.+|++++..-+.. ..-..+.++++.||...|+.++|+..|+++. .+|+......|+.
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3557888999999999999999999999876543 4457889999999999999999999999985 7899888888877
Q ss_pred Hhhhhh
Q 017641 359 FMFSFQ 364 (368)
Q Consensus 359 LlyiLE 364 (368)
.+-.++
T Consensus 118 ~l~~l~ 123 (129)
T 2xev_A 118 RLQSIR 123 (129)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 665544
No 4
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=1.8e-05 Score=59.99 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHH
Q 017641 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 338 (368)
Q Consensus 259 e~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi 338 (368)
+.+..|++-.-+..+.. ......+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.+++||...|+.++|+
T Consensus 8 ~A~~~~~~al~~~~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGK--DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp CCHHHHHHHHSSCCCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHH
Confidence 34555555543332222 334557888999999999999999999999987765 678899999999999999999
Q ss_pred HHHHHHh-cCC-CHHHHHHHHHHhhhhhcc
Q 017641 339 IMYEKLQ-SHP-NALVSKRARQFMFSFQVY 366 (368)
Q Consensus 339 aLYkkL~-sHP-~~eVrKQAkrLlyiLEAm 366 (368)
..|++.. .+| ++.+..-.+.+.+-.+++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999975 444 455655555555444443
No 5
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.09 E-value=2.2e-05 Score=58.92 Aligned_cols=77 Identities=9% Similarity=0.020 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNALVSKRAR 357 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~eVrKQAk 357 (368)
..+..|..++..|+|.+|+.+|++|+++-+... .+.+.++.||...|+.++|+..|++.. .+++....++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 467889999999999999999999999876654 478899999999999999999999875 467777777766
Q ss_pred HHhhh
Q 017641 358 QFMFS 362 (368)
Q Consensus 358 rLlyi 362 (368)
+++-.
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 6
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.3e-05 Score=55.18 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||-..|+.++|+..|++.. .+|+-
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567889999999999999999999999987654 5678889999999999999999999975 56763
No 7
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.03 E-value=1.9e-05 Score=66.72 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc----------CChHHHHHHHHHHh-cCCCHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL----------HRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~----------GR~~EAiaLYkkL~-sHP~~e 351 (368)
.+..|..++..|+|.+|+..|+++++.-+ .+....++.++++.||..+ |+.++|+..|+++. .||+-.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 38889999999999999999999998755 5667889999999999988 99999999999996 799887
Q ss_pred HHHHHHHHhh
Q 017641 352 VSKRARQFMF 361 (368)
Q Consensus 352 VrKQAkrLly 361 (368)
.-++|..++-
T Consensus 230 ~~~~a~~~l~ 239 (261)
T 3qky_A 230 LLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.02 E-value=2.8e-05 Score=61.15 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
+..|..++..|+|.+|+..|++|+++-+.. ..+-+.++.||..+|+.++|+..|++.
T Consensus 51 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 51 SNRAACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444455555555555555544443322 234444555555555555555555544
No 9
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.98 E-value=5.2e-05 Score=58.43 Aligned_cols=72 Identities=11% Similarity=0.002 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc---cchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (368)
+.-|..|..+|+.|+|..|+.+|+.|+....... .--..+-.+|+.||...|+.++|+.+|+++. -.|+-..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 4568899999999999999999999999886543 2346788899999999999999999999985 6776543
No 10
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=1.4e-05 Score=63.21 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
-.+..|..++..|+|.+|+.+|++|+.+-+.. ..+.+.++.||..+|+.++|+..|++.. .+|+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 34445667777777777777777777664433 4566677777777777777777777764 4555
No 11
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=8.2e-05 Score=53.96 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 356 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 356 (368)
...+..|..++..|+|.+|+.+|+++++..+...... ..+.+.++.+|...|+.++|+..|++.. .+|+..+....
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3456789999999999999999999999876543222 6788889999999999999999999985 67888887777
Q ss_pred HHHhhhhh
Q 017641 357 RQFMFSFQ 364 (368)
Q Consensus 357 krLlyiLE 364 (368)
.++.-.+.
T Consensus 119 ~~~~~~~~ 126 (131)
T 1elr_A 119 QQAEKILK 126 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 12
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.93 E-value=7.1e-05 Score=60.21 Aligned_cols=102 Identities=13% Similarity=0.008 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-+ .++|.... ..+..|..++..|+|.+|+..|++|+.+-+... .+.+.++.||...|+.
T Consensus 35 g~~~~A~~~~~~al--~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 35 GXYEDAHXVFQALC--VLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGEL 105 (148)
T ss_dssp TCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHH--HcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCH
Confidence 34556666666543 44554432 246789999999999999999999999877654 5678899999999999
Q ss_pred HHHHHHHHHHh-cCCC----HHHHHHHHHHhhhhhc
Q 017641 335 KEARIMYEKLQ-SHPN----ALVSKRARQFMFSFQV 365 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP~----~eVrKQAkrLlyiLEA 365 (368)
++|+..|++.. ..|. ..++.++..++-.++-
T Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 106 AEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 99999999885 4554 6778888888766553
No 13
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.92 E-value=3.4e-05 Score=64.83 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
++..|..|..+|..|+|.+|+..|++++..-+ .+...-++.++++.||...|+.++|+..|+++. .||.-
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 35678999999999999999999999998655 466777899999999999999999999999985 67764
No 14
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=5.4e-05 Score=57.08 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
+..+..+.+..|.+-. .++|... ...+..|..++..|+|.+|+..|++|+..-+.. ..+.+.++.||...|
T Consensus 16 ~~~~~~~A~~~~~~al--~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMI--KRAPEDA---RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVK 86 (126)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHH--HhCCCCh---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHh
Confidence 3344566666666444 4444432 345667888888888888888888888775543 456777888888888
Q ss_pred ChHHHHHHHHHHh-cC
Q 017641 333 RPKEARIMYEKLQ-SH 347 (368)
Q Consensus 333 R~~EAiaLYkkL~-sH 347 (368)
+.++|+..|++.. .+
T Consensus 87 ~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 87 EYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888888764 45
No 15
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.90 E-value=6.8e-05 Score=58.62 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-+ .++|... .-.+..|..++..|+|.+|+.+|++|+.+-+... .+.+.++.||...|+.
T Consensus 32 g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 32 GKWDDAQKIFQALC--MLDHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPFHAAECHLQLGDL 102 (142)
T ss_dssp TCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHH--HhCCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCH
Confidence 34455555555433 3344432 2356779999999999999999999999877654 4678899999999999
Q ss_pred HHHHHHHHHHh-cCC----CHHHHHHHHHHhhhh
Q 017641 335 KEARIMYEKLQ-SHP----NALVSKRARQFMFSF 363 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP----~~eVrKQAkrLlyiL 363 (368)
++|+..|++.. .+| ...++.++..++-.+
T Consensus 103 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 103 DGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 99999999875 444 566777777776544
No 16
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=5.5e-05 Score=56.25 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..|..|..++..|+|.+|+.+|++++..-+ .+.....+.++++.||-..|+.++|+..|+++. .+|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 367889999999999999999999998765 455566899999999999999999999999985 57764
No 17
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.87 E-value=7.7e-05 Score=58.38 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+.+......|..+|..|+|.+|+.+|++|+++-|.. ..+-..++.||-.+|+.++|+..|++..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445567999999999999999999999987655 4567789999999999999999999874
No 18
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=0.00036 Score=52.17 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
..+..+.+..|++-..+ +|.........+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+
T Consensus 41 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 41 CGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGR 114 (148)
T ss_dssp TTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCC
Confidence 34566777788776644 45443445667888999999999999999999999885543 6778889999999999
Q ss_pred hHHHHHHHHHHh-cCCC-HHHHHH
Q 017641 334 PKEARIMYEKLQ-SHPN-ALVSKR 355 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~-~eVrKQ 355 (368)
.++|+..|+++. .+|+ ..+...
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 115 LDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHH
Confidence 999999999985 5664 444443
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.79 E-value=0.00019 Score=57.42 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
.+.+.++.|.+.. ..+| +.....|..|..+|..|+|.+|+++|++|+++-+.. ..+...|+.||...|+.+
T Consensus 12 ~~e~ai~~~~~a~--~~~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 12 DVERYIASVQGST--PSPR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTD 82 (150)
T ss_dssp HHHHHHHHHHHHS--CSHH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHhc--ccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchH
Confidence 3455667776554 3333 334456889999999999999999999999987654 567888999999999999
Q ss_pred HHHHHHHHHh-cCCC
Q 017641 336 EARIMYEKLQ-SHPN 349 (368)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (368)
+|+..|++.. .+|+
T Consensus 83 ~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 83 KAVECYRRSVELNPT 97 (150)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 9999999975 5775
No 20
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.77 E-value=0.00015 Score=51.37 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-CChHHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~-sHP~ 349 (368)
..+..|..++..|+|.+|+.+|++++...+. .....+...++.||... |+.++|+..++++. .||+
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 3577899999999999999999999988665 23467888899999999 99999999999996 5664
No 21
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.76 E-value=7e-05 Score=54.17 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHH-HHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL-AALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe-aqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.|..|..++..|+|.+|+..|+++++.-+.. .. +.++++.||...|+.++|+..|++.. .+|+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4788999999999999999999999986654 34 78889999999999999999999985 5664
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.75 E-value=0.00014 Score=57.56 Aligned_cols=83 Identities=14% Similarity=0.059 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
..+..+.+..|++-+ .++|. .....+..|..++..|+|.+|+.+|++|+.+-+.. ..+.+.++.||...|+
T Consensus 24 ~g~~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 24 RKEYSKAIDLYTQAL--SIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMAD 94 (164)
T ss_dssp TTCHHHHHHHHHHHH--HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccC
Confidence 334555666665444 33333 24556677888888888888888888888876554 5677788888888888
Q ss_pred hHHHHHHHHHHh
Q 017641 334 PKEARIMYEKLQ 345 (368)
Q Consensus 334 ~~EAiaLYkkL~ 345 (368)
.++|+..|++..
T Consensus 95 ~~~A~~~~~~al 106 (164)
T 3sz7_A 95 YKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888874
No 23
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.73 E-value=0.00015 Score=61.22 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
++..|..|..+|..|+|.+|+.+|+++++.-+ .+.....+.++++.||-..|+.++|+..|+++. .+|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 45689999999999999999999999998765 455668999999999999999999999999996 5773
No 24
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00053 Score=47.83 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
....+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||...|+.++|+..|++.. .+|+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3456778999999999999999999999886544 4678889999999999999999999985 56653
No 25
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.70 E-value=0.00014 Score=60.35 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=60.3
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.++|.. .+..|..|..++..|+|.+|+.+|++|+.+-|.+ ..+.+.|+.||...||.++|+..|++.. -.|+
T Consensus 30 ~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 30 AIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CSCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 455554 4458999999999999999999999999987755 4467779999999999999999999985 4554
No 26
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.69 E-value=0.00026 Score=55.27 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=61.3
Q ss_pred CCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cC
Q 017641 269 GLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH 347 (368)
Q Consensus 269 Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH 347 (368)
-+.++|.. .+..+..|..++..|+|.+|+.+|++++..-+.+ ..+.+.++.||...|+.++|+..|++.. ..
T Consensus 10 al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 10 LRGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp CTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 35666664 3457889999999999999999999999887654 4567789999999999999999999985 34
Q ss_pred CC
Q 017641 348 PN 349 (368)
Q Consensus 348 P~ 349 (368)
|+
T Consensus 83 p~ 84 (142)
T 2xcb_A 83 IN 84 (142)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 27
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=0.00049 Score=51.33 Aligned_cols=76 Identities=11% Similarity=0.005 Sum_probs=60.6
Q ss_pred HHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHH
Q 017641 261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 340 (368)
Q Consensus 261 LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 340 (368)
+..|++-+ .++|... ...+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.|+.||...|+.++|+..
T Consensus 5 ~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 5 TERLEAML--AQGTDNM---LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp HHHHHHHH--TTTCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHH--HhCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHH
Confidence 44454443 3444432 346788999999999999999999999886644 56788999999999999999999
Q ss_pred HHHHh
Q 017641 341 YEKLQ 345 (368)
Q Consensus 341 YkkL~ 345 (368)
|++..
T Consensus 76 ~~~al 80 (115)
T 2kat_A 76 WESGL 80 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 28
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.67 E-value=0.00021 Score=50.90 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
+..+.+..|.+-. .++|.. ....+..|..++..|+|.+|+.+|++++..-+. ...+.+.++.||...|+.+
T Consensus 19 ~~~~A~~~~~~~~--~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 19 NIDDALQCYSEAI--KLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHH--HHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHH
Confidence 4445555565443 334433 334667788889999999999999998887654 3567788889999999999
Q ss_pred HHHHHHHHHh-cCCC
Q 017641 336 EARIMYEKLQ-SHPN 349 (368)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (368)
+|+..|++.. .+|+
T Consensus 90 ~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 90 EAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHcCCC
Confidence 9999998875 4554
No 29
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.66 E-value=0.00024 Score=57.07 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=60.2
Q ss_pred CcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 270 l~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
+.++|.. ....+..|..++..|+|.+|+.+|++++..-+.+ -.+.+.++.||...|+.++|+..|++.. ..|
T Consensus 14 l~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 14 NEISSDT---LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp TTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HcCCHhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3455654 4457889999999999999999999999987765 3556789999999999999999999985 455
Q ss_pred C
Q 017641 349 N 349 (368)
Q Consensus 349 ~ 349 (368)
+
T Consensus 87 ~ 87 (148)
T 2vgx_A 87 X 87 (148)
T ss_dssp T
T ss_pred C
Confidence 3
No 30
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.65 E-value=0.00039 Score=53.03 Aligned_cols=65 Identities=11% Similarity=-0.061 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+.++|+..|++.. .+|..
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 45667888899999999999999998876543 4677888999999999999999998875 46643
No 31
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.65 E-value=0.00052 Score=57.62 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
+..|..++.+|+|.+|+..|+++++.-|. +....++...++.||..+|+.++|+..+++|. .+|.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 67899999999999999999999988765 44556899999999999999999999999996 4443
No 32
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.62 E-value=0.00031 Score=50.91 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.++..+..|..++..|+|.+|+.+|++++...+.. ..+.+.++.||-..|+.++|+..|++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45667889999999999999999999999986553 5678889999999999999999999985
No 33
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.62 E-value=0.0003 Score=52.72 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
..+..+.+..|++-+ .++|. .....+..|..++..|+|.+|+.+|++|+..-+. ...+.+.++.||...|+
T Consensus 22 ~~~~~~A~~~~~~al--~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~ 92 (137)
T 3q49_B 22 GRKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMES 92 (137)
T ss_dssp TTCHHHHHHHHHHHH--HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTC
T ss_pred hCcHHHHHHHHHHHH--hhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHhh
Confidence 334555566665443 33332 2445566677888888888888888888776544 34567778888888888
Q ss_pred hHHHHHHHHHHh
Q 017641 334 PKEARIMYEKLQ 345 (368)
Q Consensus 334 ~~EAiaLYkkL~ 345 (368)
.++|+..|++..
T Consensus 93 ~~~A~~~~~~a~ 104 (137)
T 3q49_B 93 YDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 34
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00052 Score=51.62 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.++..+..|..+|..|+|.+|+.+|++|+..-+.. ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45677889999999999999999999999987765 4778889999999999999999999985 4665
No 35
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.58 E-value=0.00031 Score=51.38 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
..+..+.+..|.+-. .++|.. ....+..|..++..|+|.+|+.+|++++..-+. ...+.+.++.||...|+
T Consensus 29 ~~~~~~A~~~~~~al--~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 29 KGDYPQAMKHYTEAI--KRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKD 99 (133)
T ss_dssp TTCSHHHHHHHHHHH--TTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhh
Confidence 344556666776554 334432 566777899999999999999999999987554 35677889999999999
Q ss_pred hHHHHHHHHHHh-cCCCH
Q 017641 334 PKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~ 350 (368)
.++|+..|++.. .+|+.
T Consensus 100 ~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 100 YTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 999999999875 56653
No 36
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.57 E-value=0.00013 Score=56.75 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
+..+..+.+..|++-+ .++|.. .+..+..|..++..|++.+|+..|++|+++-+.. ..+.+.|+.||...|
T Consensus 29 ~~g~~~~A~~~~~~al--~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 29 KLANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEH 99 (121)
T ss_dssp HTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH--HHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC
Confidence 3445566666666544 445554 3346778999999999999999999999987764 357788999999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 017641 333 RPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 333 R~~EAiaLYkkL~-sHP~ 349 (368)
+.++|+..|+++. .+|.
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 9999999999875 5664
No 37
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.57 E-value=0.00067 Score=53.24 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=60.9
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.|||+. ++.....|..+|..|+|.+|+.+|++|++.-+.. ..+-..+++||..+|+.++|+..|++.. .+|+
T Consensus 7 ~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 7 YINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 477764 4446778999999999999999999999987765 4577889999999999999999999975 4555
No 38
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=0.00028 Score=52.81 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
++..+..|..++..|+|.+|+.+|++++...+.. ..-..+.++++.||-..|+.++|+..|++.. .+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 4557889999999999999999999999876532 2236788889999999999999999999975 5664
No 39
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.53 E-value=0.00041 Score=56.53 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc-h-----------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-H-----------GLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-G-----------GeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
...++..+..|..++..|+|.+|+.+|++|+...+..... . ..+..+++.||-..|+.++|+..|++.
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3455566778888888888888888888888876654311 1 266777888888888888888888877
Q ss_pred h-cCCC
Q 017641 345 Q-SHPN 349 (368)
Q Consensus 345 ~-sHP~ 349 (368)
. .+|.
T Consensus 115 l~~~p~ 120 (198)
T 2fbn_A 115 LKIDKN 120 (198)
T ss_dssp HHHSTT
T ss_pred HHhCcc
Confidence 4 4553
No 40
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.52 E-value=0.00088 Score=48.27 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|+++. .+|+
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 35667888888999999999999988875443 5677888889999999999999998874 4664
No 41
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.51 E-value=0.00077 Score=47.63 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|++.. .+|.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3567899999999999999999999986654 4677889999999999999999999985 5665
No 42
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.50 E-value=0.0013 Score=52.01 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
...++..+..|..++..|+|.+|+.+|++|+++-+.. ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3566778999999999999999999999999987764 5678889999999999999999999985 5665
No 43
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.49 E-value=0.0018 Score=47.28 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
......+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+.++|+.+|++.. .+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 345567889999999999999999999999876543 6788899999999999999999999985 4554
No 44
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.48 E-value=0.00042 Score=53.91 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
...|..|..++..|+|.+|+..|++|+..-+.. .++.+.+++||...|+.++|+..|++.. ..|+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 346889999999999999999999999987664 5678889999999999999999999985 5664
No 45
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.48 E-value=0.00024 Score=62.04 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC-------c-cchHHHHHHHHHHHHhcCChHHHHHHHHHHh-c
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-------S-ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-S 346 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-------S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-s 346 (368)
.+++...+..|..+|..|+|.+|+..|++|+++.+.. . .+...+-..++.||..+||.+||+..|.+.. .
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4578889999999999999999999999999999872 1 1123377779999999999999999999885 5
No 46
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.48 E-value=0.0003 Score=58.72 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH----------------HHHHHHhcCChHHHHHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ----------------WSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw----------------LAiAydA~GR~~EAiaLYkk 343 (368)
++..+..|..++..|+|.+|+.+|++++..-|.+ .++.+| ++.||...|+.++|+..|++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4567899999999999999999999999886654 346677 99999999999999999999
Q ss_pred Hh-cCCCH
Q 017641 344 LQ-SHPNA 350 (368)
Q Consensus 344 L~-sHP~~ 350 (368)
.. .+|+-
T Consensus 80 al~~~p~~ 87 (208)
T 3urz_A 80 LLQKAPNN 87 (208)
T ss_dssp HHHHCTTC
T ss_pred HHHHCCCC
Confidence 85 67753
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.44 E-value=0.00097 Score=54.79 Aligned_cols=58 Identities=17% Similarity=0.325 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcc-cCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMV-FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~-~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.+..|..++..|+|.+|+.+|+++++.-+ ... .+..+++.||...|+.++|+..|++.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 34444444555555555555555444443 111 33444444444444444444444444
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.41 E-value=0.0009 Score=52.97 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
-+..|..++.+|+|.+|+.+|++|++.-|.+ .++...++.||...|+.++|+..|+++. .+|+.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 4567899999999999999999998876654 4677888999999999999999998885 45543
No 49
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.38 E-value=0.0022 Score=45.51 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.++..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 45667889999999999999999999999886654 5678889999999999999999999985 5664
No 50
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.0004 Score=67.26 Aligned_cols=125 Identities=19% Similarity=0.137 Sum_probs=85.4
Q ss_pred ccccccCCC--------CCCccccCCC-------cccCCCCccC-----cHHHHHHHHHHHHHHHHHHHh----------
Q 017641 217 STWGVFPRP--------GNISKTFGGG-------RTIRPGDVLE-----TAEARAAKEERTRQLLAAYKK---------- 266 (368)
Q Consensus 217 sTWGvFPRP--------~NISkayGGG-------R~IrpGe~lE-----teEEkaar~~rtke~LaaYrk---------- 266 (368)
..+|+||.. .|....|.|+ |.|++|++|. ...-...|.+ .+...|..
T Consensus 194 ~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~---~L~~~~~F~C~C~~C~~~ 270 (429)
T 3qwp_A 194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRK---QLRDQYCFECDCFRCQTQ 270 (429)
T ss_dssp EEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHH---HHHHHHCCCCCSHHHHHT
T ss_pred ceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHH---HHhccCCeEeeCCCCCCC
Confidence 358888864 3677778777 7899999862 1111222322 23333310
Q ss_pred ---hcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHH
Q 017641 267 ---SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARI 339 (368)
Q Consensus 267 ---~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAia 339 (368)
..=+..++.....+++++..-..+...|+|.+|+++|+++++. +......-..+--.|+.+|...|+.++|+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~ 350 (429)
T 3qwp_A 271 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALF 350 (429)
T ss_dssp TTHHHHTCSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHH
Confidence 0002334445566788888889999999999999999999865 333333336777789999999999999999
Q ss_pred HHHHH
Q 017641 340 MYEKL 344 (368)
Q Consensus 340 LYkkL 344 (368)
+|++.
T Consensus 351 ~~~~~ 355 (429)
T 3qwp_A 351 YGTRT 355 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.37 E-value=0.0011 Score=55.53 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-. .++|... ...+..|..++..|+|.+|+..|++|+++- . ..++.+.++.||...|+.
T Consensus 98 g~~~~A~~~~~~al--~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~---~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 98 GYLEQALSVLKDAE--RVNPRYA---PLHLQRGLVYALLGERDKAEASLKQALALE--D---TPEIRSALAELYLSMGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHH--HhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c---chHHHHHHHHHHHHcCCH
Confidence 56677777777554 4556543 335778999999999999999999999876 2 357788999999999999
Q ss_pred HHHHHHHHHHh-cCCCH
Q 017641 335 KEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP~~ 350 (368)
++|+..|+++. .+|+-
T Consensus 168 ~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 168 DEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999985 67754
No 52
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.36 E-value=0.0011 Score=49.65 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
++..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 4457889999999999999999999999987654 5688889999999999999999999985 5665
No 53
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.35 E-value=0.0026 Score=45.78 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
...+...+..|..++..|+|.+|+.+|++++...+.. ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 3456678889999999999999999999999886543 5678889999999999999999999985 5665
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.32 E-value=0.00096 Score=52.82 Aligned_cols=63 Identities=17% Similarity=0.059 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~ 349 (368)
.+..|..++..|+|.+|+..|+++++.-+.. ..+...++.||...|+.++|+..|++. +.+|+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 5667999999999999999999999986654 567888999999999999999999986 46664
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.29 E-value=0.00078 Score=55.64 Aligned_cols=64 Identities=11% Similarity=-0.046 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..+..|..++..|+|.+|+.+|++|++...... ..-..+...++.+|...|+.++|+..|++..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334445555555555555555555544433221 1223344445555555555555555555544
No 56
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.28 E-value=0.0016 Score=51.34 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=38.4
Q ss_pred cCchhhhhHHHHHHHhhc--------ccC------ccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 293 SGKLKEALPFYEKVMNKM--------VFK------SELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 293 rGkYr~AV~~lEkA~~~v--------~~~------S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.|+|.+|+.+|++|+..+ +.. ......+.+.++.||-.+|+.++|+..|++.. .+|+
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 467777777777777761 111 23445566778888888888888888888774 3454
No 57
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.28 E-value=0.002 Score=54.33 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+..|..++..|+|.+|+..|+++++..+....+-..+.+.++.||...|+.++|+.+|+++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455566666666666666666655555444444444555555555555555555555553
No 58
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.25 E-value=0.004 Score=47.33 Aligned_cols=72 Identities=8% Similarity=-0.023 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
......++..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3445677788899999999999999999999999876654 6778889999999999999999999875 4564
No 59
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.25 E-value=0.0039 Score=44.47 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..+..|..++..|+|.+|+.+|++++...+.. ..+.+.++.+|...|+.++|+..|+++. .+|+.
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45677999999999999999999999875543 4567788999999999999999999975 56654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.24 E-value=0.00086 Score=59.09 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..+...+..|..++..|+|.+|+.+|++|++.-+.....-+.+...++.+|...|+.++|+.+|++.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444445555555555555555555544433333333344444445555555555555544443
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.21 E-value=0.003 Score=52.63 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=55.4
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..|..++..|+|.+|+..|++|+++-|.. ..+.+.++.||...|+.++|+..|+++. .+|+-
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 38999999999999999999999987765 4788899999999999999999999985 67763
No 62
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.21 E-value=0.0025 Score=45.44 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
...+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 446778999999999999999999999876543 4677889999999999999999999985 4553
No 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.20 E-value=0.003 Score=50.76 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc------------cchHHHHHHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQW 324 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S------------~LGGeaqLwL 324 (368)
..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|++..+.+. .....+.+.+
T Consensus 53 ~~~A~~~~~~al--~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 53 MTEAEKAFTRSI--NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 344455554433 233433 23467789999999999999999999999877644 2345888999
Q ss_pred HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 325 SICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
+.||...|+.++|+..|++.. .+|...
T Consensus 128 ~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 128 AFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999999999999975 567543
No 64
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.20 E-value=0.0035 Score=51.02 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQ 358 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkr 358 (368)
...+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||...|+.++|+..|++.. .+|. ..+...-..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 456678999999999999999999999986543 5788999999999999999999999975 5664 444443333
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0017 Score=52.48 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+++..+..|..++..|+|.+|+.+|+++++.- . ...+.+.++.||...|+.++|+..|+++.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 467788999999999999999999999999886 2 25788899999999999999999999985
No 66
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.15 E-value=0.0019 Score=47.78 Aligned_cols=65 Identities=12% Similarity=0.010 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
...+..|..++..|+|.+|+.+|+++++......... +.+...++.+|...|+.++|+..|++..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455567777777888888888887777776543222 4556667777777888888888777777
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.0013 Score=56.85 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCCcCChhh-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcC
Q 017641 256 RTRQLLAAYKKSVGLNVDPKL-KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLH 332 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~-~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~G 332 (368)
+..+.+..|++-.. ++|.. ...+...+..|..++..|+|.+|+.+|++|++...... ..-..+...++.+|...|
T Consensus 24 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp CHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 34455555554432 23332 22334455556666666666666666666655543322 223445555666666666
Q ss_pred ChHHHHHHHHHHh
Q 017641 333 RPKEARIMYEKLQ 345 (368)
Q Consensus 333 R~~EAiaLYkkL~ 345 (368)
+.++|+..|++..
T Consensus 102 ~~~~A~~~~~~al 114 (406)
T 3sf4_A 102 NFDEAIVCCQRHL 114 (406)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666665
No 68
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.12 E-value=0.0011 Score=61.85 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQF 359 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL 359 (368)
..+..|..++..|+|.+|+.+|++|+++-+.+ ..+.+.++.||..+|+.++|+..|++.. ..| +..+...-..+
T Consensus 275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44556888899999999999999999876543 5778889999999999999999999874 456 45555544444
Q ss_pred h
Q 017641 360 M 360 (368)
Q Consensus 360 l 360 (368)
+
T Consensus 351 ~ 351 (370)
T 1ihg_A 351 K 351 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.11 E-value=0.0076 Score=57.33 Aligned_cols=75 Identities=12% Similarity=-0.063 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCch-hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641 281 EKALKDGDSLMDSGKL-KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 358 (368)
Q Consensus 281 eea~~~Gk~AmerGkY-r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 358 (368)
+..+..|..++..|+| .+|+.+|++|+++-+.. ..+...|+.||-..|+.++|+..|++.. ..|+..+...-..
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~ 178 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3456679999999999 99999999999986653 5788899999999999999999999985 6888544433333
Q ss_pred H
Q 017641 359 F 359 (368)
Q Consensus 359 L 359 (368)
+
T Consensus 179 ~ 179 (474)
T 4abn_A 179 V 179 (474)
T ss_dssp H
T ss_pred H
Confidence 3
No 70
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0019 Score=57.91 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|.+-.- ++|. ....+..|..++..|+|.+|+..|+++++.-+.. ..+.+.++.||...|+.
T Consensus 20 g~~~~A~~~~~~al~--~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 20 KKYDDAIKYYNWALE--LKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVLLRRASANEGLGKF 89 (514)
T ss_dssp SCHHHHHHHHHHHHH--HCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHh--cCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHHHHHHHHHHHHhhH
Confidence 344555555554442 2332 3345556777777777777777777777654433 25566677777777777
Q ss_pred HHHHHHHHHHh
Q 017641 335 KEARIMYEKLQ 345 (368)
Q Consensus 335 ~EAiaLYkkL~ 345 (368)
++|+..|+++.
T Consensus 90 ~~A~~~~~~~~ 100 (514)
T 2gw1_A 90 ADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.08 E-value=0.0021 Score=56.68 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-+ .++|. .....+..|..++..|+|.+|+..|++|+.+-+.+ ..+.+.++.+|...|+.
T Consensus 18 g~~~~A~~~~~~al--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 18 RKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESY 88 (281)
T ss_dssp TCHHHHHHHHHHHH--HHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHH--HhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCH
Confidence 34455555555333 22332 24445556777777777777777777777664433 35566777777777777
Q ss_pred HHHHHHHHHH
Q 017641 335 KEARIMYEKL 344 (368)
Q Consensus 335 ~EAiaLYkkL 344 (368)
++|+..|++.
T Consensus 89 ~~A~~~~~~a 98 (281)
T 2c2l_A 89 DEAIANLQRA 98 (281)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
No 72
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.07 E-value=0.0033 Score=59.07 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 330 (368)
Q Consensus 251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 330 (368)
..+..|..+.+..+++.... .|+. ....-.|-.|..+-..|++.+|+.+|++|...- ..-..--++++++++||..
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~-~d~~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKW-PDKF--LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGC-SCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhcc-CCcc--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHH
Confidence 45556677777777644322 2443 233456888999999999999999999997321 0011256799999999999
Q ss_pred cCChHHHHHHHHHHh-cCCCHHHH
Q 017641 331 LHRPKEARIMYEKLQ-SHPNALVS 353 (368)
Q Consensus 331 ~GR~~EAiaLYkkL~-sHP~~eVr 353 (368)
.||.+||+++|+++. .+|..++.
T Consensus 221 lGr~deA~~~l~~a~a~~P~~~~~ 244 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTTHPEPKVA 244 (282)
T ss_dssp HTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999996 79984433
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.06 E-value=0.0018 Score=53.52 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..++..|+|.+|+.+|+++++ .+.+..+-+.+.+.++.||...|+.++|+..|++.. .+|+
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 44556677777777777777777777 555556666666777777777777777777777764 3443
No 74
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.06 E-value=0.0022 Score=56.55 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSK 354 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrK 354 (368)
.+..+..|..++..|++.+|+..|++++..-|.+ ..+.+.|+.+|-..||.++|+.+|+++. .+|+.....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 188 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG 188 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH
Confidence 4557899999999999999999999999988866 4788999999999999999999999985 688765443
No 75
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.04 E-value=0.0022 Score=53.80 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..+..|..++..|+|.+|+..|++|+..-|.. ..+..+++.||...|+.++|+..|++.. ..|+-
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 45778999999999999999999999887665 5678899999999999999999999985 56653
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.00 E-value=0.0028 Score=53.43 Aligned_cols=85 Identities=24% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCCh
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (368)
.+..+.+..|++-. ..+|. .....+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.||...|+.
T Consensus 17 g~~~~A~~~~~~~l--~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 17 GQLADALSQFHAAV--DGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGKL 87 (359)
T ss_dssp TCHHHHHHHHHHHH--HHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHH--hhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHcCCh
Confidence 34455555565443 22332 24556667888888888888888888888775443 36677788888888888
Q ss_pred HHHHHHHHHHh-cCC
Q 017641 335 KEARIMYEKLQ-SHP 348 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP 348 (368)
++|+.+|+++. .+|
T Consensus 88 ~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 88888888875 466
No 77
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0029 Score=51.11 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HHHHHHHHHHHHhcCC
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHR 333 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR 333 (368)
..+.+..|++-..++ +. ....+..|..++..|+|.+|+.+|+++++..+....-. ..+.+.++.||...|+
T Consensus 21 ~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 21 FDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 444555555444333 11 23467789999999999999999999999876543222 6888899999999999
Q ss_pred hHHHHHHHHHHh-cCCCHHHHHHHH
Q 017641 334 PKEARIMYEKLQ-SHPNALVSKRAR 357 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~eVrKQAk 357 (368)
.++|+..|++.. .+|...+-.+..
T Consensus 95 ~~~A~~~~~~a~~~~~~~~~~~~~~ 119 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRTADILTKLR 119 (258)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHh
Confidence 999999999986 577766544433
No 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.99 E-value=0.0087 Score=49.10 Aligned_cols=59 Identities=8% Similarity=-0.120 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.++.+|-..|+.++|+.+|++.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34445555555555555555555555543321 234444555555555555555555554
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.99 E-value=0.0057 Score=49.70 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
..+...+..|..++..|+|.+|+.+|++|+.... ........+...++.+|...|+.++|+.+|++...
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677789999999999999999999988752 22455678888999999999999999999998854
No 80
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.98 E-value=0.002 Score=58.59 Aligned_cols=93 Identities=16% Similarity=0.072 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhcCCcCChh----------hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHH
Q 017641 254 EERTRQLLAAYKKSVGLNVDPK----------LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ 323 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~----------~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw 323 (368)
..+..+.+..|++-+.++-+.. ....+...+..|..++..|+|.+|+.+|++|+++-+.+ ..+.+.
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~ 235 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSR 235 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHH
Confidence 3455667777776654433321 01124556677888899999999999999998886654 467788
Q ss_pred HHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 324 WSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
++.||..+|+.++|+..|++.. .+|+-
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999998874 56643
No 81
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.97 E-value=0.0023 Score=56.91 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~ 349 (368)
.+..|..++..|+|.+|+.+|+++++..+....+-..+...++.+|...|+.++|+.+|++. ..+|+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 327 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD 327 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34557777777777777777777777665544444556666777777777777777777775 34553
No 82
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.97 E-value=0.0015 Score=59.63 Aligned_cols=73 Identities=26% Similarity=0.263 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc--chH-----------HHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHG-----------LAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGG-----------eaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
...++..+..|..+|..|+|.+|+.+|++|+...+.... .-| .+.+.++.||-..|+.++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566777888888888888888888888877665431 112 2667788888888888888888887
Q ss_pred Hh-cCCC
Q 017641 344 LQ-SHPN 349 (368)
Q Consensus 344 L~-sHP~ 349 (368)
.. .+|+
T Consensus 256 al~~~p~ 262 (338)
T 2if4_A 256 VLTEEEK 262 (338)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 64 4553
No 83
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.96 E-value=0.002 Score=61.35 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
..+..|..++..|+|.+|+.+|++|+.+-+.+ -.+.+.++.||-.+|+.++|+..|++.. .+|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 34455666666666666666666666665543 3455666666667777777776666653 344
No 84
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.95 E-value=0.0025 Score=55.52 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChh-------hHH--HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---HH
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPK-------LKS--ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GL 319 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~-------~~~--e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---Ge 319 (368)
.+..+..+.+..|++-. .++|. ... .+..-+..|..+..-|+|.+|+..|++|+++.+...++. +.
T Consensus 22 ~~~g~~eeAi~~Y~kAL--~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~ 99 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAM--EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 99 (159)
T ss_dssp HHHTCHHHHHHHHHHHH--HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHCCCHHHHHHHHHHHH--hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence 34556788899998766 44444 221 223566779999999999999999999999833333332 44
Q ss_pred HH----HHHHHHHHhcCChHHHHHHHHHHh
Q 017641 320 AA----LQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 320 aq----LwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+- ..++.||..+||++||+.-|++..
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 55 678999999999999999999874
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.94 E-value=0.0074 Score=49.49 Aligned_cols=87 Identities=7% Similarity=0.042 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc---hHHHHHHHHHHHHhcCCh
Q 017641 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQDSLHRP 334 (368)
Q Consensus 258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L---GGeaqLwLAiAydA~GR~ 334 (368)
.+.+..|.+-. .++|.. ....+..|..++..|+|.+|+..|++++..-+.+..+ -+.+.+.++.+|...|+.
T Consensus 59 ~~A~~~~~~al--~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 59 KEAADYFDIAI--KKNYNL---ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp HHHHHHHHHHH--HTTCSH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH--HhCcch---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence 34444454433 334442 2335667888888888888888888888877766533 235566788888888888
Q ss_pred HHHHHHHHHHh-cCCC
Q 017641 335 KEARIMYEKLQ-SHPN 349 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP~ 349 (368)
++|+..|++.. .+|+
T Consensus 134 ~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 134 EKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHhcCCC
Confidence 88888888875 4665
No 86
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.93 E-value=0.0035 Score=46.31 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc--chHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+..|..++..|+|.+|+.+|+++++....... .-..+...++.+|...|+.++|+..|++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344466666667777777777776666554432 224455556666667777777776666654
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.91 E-value=0.0021 Score=53.10 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (368)
..+..|..++..|+|.+|+.+|+++++.-+... .+.+.++.||-..|+.++|+..|+++...|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 467889999999999999999999998876543 467889999999999999999999997644
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.90 E-value=0.0049 Score=46.85 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..|..++..|+|.+|+.+|++++...+.. ..+...++.+|...|+.++|+..|+++
T Consensus 115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 115 RLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444445555555555555544443222 234444455555555555555555443
No 89
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.90 E-value=0.0067 Score=55.11 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH-HHHHHHHh
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA-RIMYEKLQ 345 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL~ 345 (368)
..+..|..++..|+|.+|+..|++|+++-+.+. .+...|+.||..+|+.++| ..+|+++-
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNK----AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888888888888888888766543 5677788888888888888 56777663
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.90 E-value=0.0016 Score=52.33 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (368)
+..+..|..++..|+|.+|+..|++|++.-|.+ ..+.+.++.+|...|+.++|+.+|+++. .+|++.+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 75 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence 346788999999999999999999998876654 4678889999999999999999999985 5665544
No 91
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.89 E-value=0.0021 Score=51.71 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
..+..+.+..|++- +++ .....+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.++.||-..|+
T Consensus 19 ~~~~~~A~~~~~~a----~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 19 KKDWKGALDAFSAV----QDP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK 86 (213)
T ss_dssp TTCHHHHHHHHHTS----SSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHH----cCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHccc
Confidence 34556667777644 232 45667788999999999999999999998876543 4677788999999999
Q ss_pred hHHHHHHHHHHh-cCCCH
Q 017641 334 PKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~ 350 (368)
.++|+..|++.. .+|..
T Consensus 87 ~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 999999998885 45543
No 92
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.89 E-value=0.0058 Score=53.10 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhh---cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNK---MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~---v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+...+..|..++..|+|.+|+.+|++|++. .+....+...+...++.||...|+.++|+..|++..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556677899999999999999999999944 443434445788889999999999999999999864
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.89 E-value=0.0045 Score=50.29 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..+...+..|..++..|+|.+|+.+|+++++... .....-..+...++.||...|+.++|+.+|++..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455567789999999999999999999998742 2245567888899999999999999999999885
No 94
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.89 E-value=0.0029 Score=57.47 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.++..+..|..++..|+|.+|+.+|++|+..-+.+ ..+.+.++.||-..|+.++|+..|+++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444445555555555555555555555444332 233444455555555555555555544
No 95
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.88 E-value=0.0038 Score=51.87 Aligned_cols=69 Identities=7% Similarity=0.034 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc----CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF----KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~----~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-..++..+..|..++..|+|.+|+.+|+++++.... ....-..+...++.+|-..|+.++|+.+|++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355666888999999999999999999999987643 345667888999999999999999999999875
No 96
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.87 E-value=0.006 Score=48.17 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-CChHHHHHHHHHHhc
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQS 346 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~s 346 (368)
....+..|..++..|+|.+|+.+|++++...+.. ..+.+.++.+|-.. |+.++|+.+|+++..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 3445556888888899999999999988876543 45677788888888 999999999988865
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.85 E-value=0.0024 Score=56.38 Aligned_cols=72 Identities=15% Similarity=-0.016 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQSHPN 349 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 349 (368)
..+...+..|..++..|+|.+|+.+|++|+...+...... +.+.+.++.||-..|+.++|+..|++...+|.
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~ 226 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Confidence 3455667789999999999999999999999876554333 34566788899999999999999999765553
No 98
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.84 E-value=0.005 Score=57.55 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=46.0
Q ss_pred hcCchhhhhHHHHHHHhhccc------------CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 292 DSGKLKEALPFYEKVMNKMVF------------KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 292 erGkYr~AV~~lEkA~~~v~~------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
..|+|.+|+.+|++|+.+++. ....-..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus 235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 367888888888888885544 345567788889999999999999999999985 5664
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.84 E-value=0.0077 Score=42.98 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+..|..++..|++.+|+.+|++++..-+.. ..+.+.++.+|-..|+.++|+.+|+++.
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445666667777777777777766654332 3445566667777777777777776653
No 100
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.84 E-value=0.0096 Score=46.98 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
...+..|..++..|+|.+|+.+|+++++..+.. ..+.+.++.+|...|+.++|+.+|+++. .+|
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345677888888899999999998888876543 5667778888888899999998888874 455
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.80 E-value=0.004 Score=54.56 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-H--HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-G--LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-G--eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
....+..|..++..|+|.+|+.+|++|++..+...... + .+.+.+++||...|+.++|+..|++.. -+|.-.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 34466779999999999999999999999887665432 2 356778999999999999999999985 366543
No 102
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.78 E-value=0.012 Score=44.74 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.+..|..++..|++.+|+.+|++++...+.. ..+.+.++.+|...|+.++|+.+|+++
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445555555566666666665555543322 234445555555555555555555554
No 103
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.77 E-value=0.007 Score=49.56 Aligned_cols=60 Identities=12% Similarity=-0.115 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
.+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.+|...|+.++|+.+|+++..
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455788888888888888888888775543 46777788888888888888888888855
No 104
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.77 E-value=0.0036 Score=54.54 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh
Q 017641 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 330 (368)
Q Consensus 251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 330 (368)
..+..+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||..
T Consensus 75 ~~~~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAI--LQDPGD---AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTN 145 (365)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH--HhCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHc
Confidence 344455566666666444 233322 4556666777778888888888888877765433 4566777777888
Q ss_pred cCChHHHHHHHHHHh-cCCC
Q 017641 331 LHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 331 ~GR~~EAiaLYkkL~-sHP~ 349 (368)
.|+.++|+.+|++.. .+|.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHH
T ss_pred cccHHHHHHHHHHHHHhCcc
Confidence 888888888887764 3443
No 105
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.75 E-value=0.019 Score=46.99 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
...+..|..++..|+|.+|+.+|+++++..+.. ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 345667888889999999999999988876543 5667788888999999999999998875 3443
No 106
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.011 Score=49.07 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----ccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..+...+..|..++..|+|.+|+.+|+++++..... ...-..+...++.||...|+.++|+.+|++..
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567788999999999999999999999875432 45556788889999999999999999999986
No 107
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.69 E-value=0.013 Score=48.02 Aligned_cols=65 Identities=20% Similarity=0.076 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
.+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.++.||-..|+.++|+..|+++. .+|+..
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 5667999999999999999999999987654 4788889999999999999999999985 466544
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.68 E-value=0.0066 Score=43.36 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..++..|++.+|+.+|++++..-+.. ..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 4667899999999999999999998875432 4567778999999999999999999985 4554
No 109
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.67 E-value=0.011 Score=46.76 Aligned_cols=64 Identities=6% Similarity=-0.076 Sum_probs=50.9
Q ss_pred HHHHHHH-HHhcCch--hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 283 ALKDGDS-LMDSGKL--KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 283 a~~~Gk~-AmerGkY--r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.+..|.. ++..|+| .+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|+++. .+|..
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 4566777 6788998 99999999998876654 3567788899999999999999998874 56654
No 110
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.00035 Score=50.33 Aligned_cols=85 Identities=9% Similarity=0.158 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCC
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR 333 (368)
+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|+.+-+... .+-+.+.+.++.||..+|+
T Consensus 19 ~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 19 LYREAVHCYDQLI--TAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566665444 345544 23467889999999999999999999999877652 2237788899999999999
Q ss_pred hHHHHHHHHHHh
Q 017641 334 PKEARIMYEKLQ 345 (368)
Q Consensus 334 ~~EAiaLYkkL~ 345 (368)
.++|+..|+++.
T Consensus 94 ~~~a~~~~~~~~ 105 (111)
T 2l6j_A 94 VQIPVVEVDELP 105 (111)
T ss_dssp CCCCSSSSSSCS
T ss_pred HhhhHhHHHHhH
Confidence 999988877663
No 111
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.65 E-value=0.0077 Score=52.51 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCch----------hhhhHHHHHHHhhcccCccchHH
Q 017641 250 RAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL----------KEALPFYEKVMNKMVFKSELHGL 319 (368)
Q Consensus 250 kaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkY----------r~AV~~lEkA~~~v~~~S~LGGe 319 (368)
..+|..+..+.+..|+.-+ .++|..-+ .-+..|..+++.|+| .+|+..|++|+++-|.. -.
T Consensus 11 ~~~r~~~feeA~~~~~~Ai--~l~P~~ae---a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~----~~ 81 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTY--KSNPLDAD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DE 81 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HH
T ss_pred HHHHHhHHHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc----HH
Confidence 4566777778888887655 45555432 355577777777765 59999999999998775 45
Q ss_pred HHHHHHHHHHhcC-----------ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 017641 320 AALQWSICQDSLH-----------RPKEARIMYEKLQ-SHPNALVSKRARQF 359 (368)
Q Consensus 320 aqLwLAiAydA~G-----------R~~EAiaLYkkL~-sHP~~eVrKQAkrL 359 (368)
+...|.+||.+.| +.++|+..|++-. -.|+-..-++|.++
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6778999998875 8999999999975 68877766666554
No 112
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.65 E-value=0.0054 Score=63.41 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
+..+.+..|++-. .++|..- +..+..|..+++.|+|.+|+++|++|+++-+.. .++...|+.+|...|+.+
T Consensus 58 ~~~eA~~~~~~Al--~l~P~~~---~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 58 KLQEALMHYKEAI--RISPTFA---DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp CHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Confidence 4455556665443 3444432 235566888888888888888888888775543 466777888888888888
Q ss_pred HHHHHHHHHh-cCCC
Q 017641 336 EARIMYEKLQ-SHPN 349 (368)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (368)
+|+..|++.. -+|+
T Consensus 129 eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 129 EAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhCCC
Confidence 8888888763 5664
No 113
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.64 E-value=0.0074 Score=48.61 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 358 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 358 (368)
..+..|..++..|+|.+|+.+|++++...+.. ..+.+.++.||...|+.++|+..|+++. .+|+-..-..+..
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 45678999999999999999999999886543 4577889999999999999999999985 6777655444433
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.63 E-value=0.0086 Score=47.34 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHH-HHhcCCh--HHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-QDSLHRP--KEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA-ydA~GR~--~EAiaLYkkL~-sHP~ 349 (368)
..+..|..++..|+|.+|+.+|++++..-+.+ ..+.+.++.| |...|+. ++|+.+|+++. .+|+
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 46778999999999999999999999987764 5677889999 8899998 99999999985 5775
No 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.61 E-value=0.0075 Score=47.54 Aligned_cols=68 Identities=15% Similarity=0.005 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc---cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..+...+..|..++..|+|.+|+.+|++|++...... ..-+.+...++.+|-..|+.++|+..|++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445567789999999999999999999999855333 2456778889999999999999999998864
No 116
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.59 E-value=0.0077 Score=47.46 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNAL 351 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~e 351 (368)
..+...+..|..++..|+|.+|+.+|+++++......... ..+...++.+|...|+.++|+..|++.. .+.+..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4455567789999999999999999999998765444333 4455889999999999999999998763 455554
Q ss_pred HHHHHH
Q 017641 352 VSKRAR 357 (368)
Q Consensus 352 VrKQAk 357 (368)
..-.+.
T Consensus 185 ~~~~~~ 190 (203)
T 3gw4_A 185 AVNELM 190 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 117
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.56 E-value=0.0063 Score=62.91 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
.-+..+.++.|++-. .++|..- +..+..|..++..|+|.+|+.+|++|+++-+.. .++...|+.||...|+
T Consensus 22 ~G~~~eAi~~~~kAl--~l~P~~~---~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 22 QGNIEEAVRLYRKAL--EVFPEFA---AAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQD 92 (723)
T ss_dssp TTCHHHHHHHHHHHH--HHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence 345667778887654 5566543 346778999999999999999999999886543 5788899999999999
Q ss_pred hHHHHHHHHHHh-cCCCH
Q 017641 334 PKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~ 350 (368)
.++|+..|++.. -+|+-
T Consensus 93 ~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999874 57753
No 118
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.55 E-value=0.01 Score=51.70 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
+...+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|+.++|+.+|++.. .+|+.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 132 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 3457889999999999999999999999987654 6778899999999999999999999985 57763
No 119
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.55 E-value=0.01 Score=52.78 Aligned_cols=68 Identities=24% Similarity=0.156 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
....+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.||...|+.++|+.+|+++. ..|+..
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 4455667899999999999999999999876543 5677889999999999999999999985 577654
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.54 E-value=0.013 Score=55.95 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC
Q 017641 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (368)
..+..+.+..|++-. .++|.. .+..+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||...|+
T Consensus 36 ~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~ 106 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGL--ALHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQ 106 (568)
T ss_dssp HTCHHHHHHHHHHHH--TTSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCC
Confidence 345566677777655 345543 3346778999999999999999999999886554 5677889999999999
Q ss_pred hHHHHHHHHHHh-cCCC
Q 017641 334 PKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 334 ~~EAiaLYkkL~-sHP~ 349 (368)
.++|+..|++.. .+|+
T Consensus 107 ~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 107 AEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 999999999974 5664
No 121
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.53 E-value=0.024 Score=48.77 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
+..+..+.+..|++-. .++|... .+...+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|
T Consensus 193 ~~~~~~~A~~~~~~a~--~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 193 SDSLFLEVKELFLAAV--RLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred hcccHHHHHHHHHHHH--HhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcC
Confidence 3445555556665443 2334311 23345678999999999999999999999875543 467888999999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 017641 333 RPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 333 R~~EAiaLYkkL~-sHP~ 349 (368)
+.++|+..|++.. .+|.
T Consensus 266 ~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPG 283 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 9999999999974 5665
No 122
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.53 E-value=0.013 Score=46.80 Aligned_cols=89 Identities=11% Similarity=-0.036 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (368)
..+.+..|++-. .++|... +.-+..|..++..|+|.+|+.+|++|+++-|.. -.+.+.++.+|...|+.++
T Consensus 47 ~~~A~~~~~~al--~~~p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 47 YDLAKKYICTYI--NVQERDP---KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----KDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHH
Confidence 344455555433 4555543 335677999999999999999999999987765 4577889999999999988
Q ss_pred HHHHH-HH-HhcCCC-HHHHH
Q 017641 337 ARIMY-EK-LQSHPN-ALVSK 354 (368)
Q Consensus 337 AiaLY-kk-L~sHP~-~eVrK 354 (368)
|+..| ++ |+-+|+ +.+-.
T Consensus 118 aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 118 RAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHH
Confidence 77654 65 556775 44433
No 123
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.47 E-value=0.012 Score=56.08 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHH-HHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR-IMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi-aLYkkL~ 345 (368)
.|..|..++..|+|.+|+.+|++|+++-+.+. .+...|+.||..+++.++|. .+|+++-
T Consensus 354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK----AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888888888888888888766554 56777888888888888775 5676663
No 124
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.46 E-value=0.014 Score=46.91 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
.+..|..++..|+|.+|+.+|+++++..+.. ..+.+.++.+|...|+.++|+.+|+++. .+|
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4455777777777777777777777765433 4556667777777777777777777764 344
No 125
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.45 E-value=0.028 Score=53.43 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhc--------CchhhhhHHHHHHHhhcccCccchHHHHHHH
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS--------GKLKEALPFYEKVMNKMVFKSELHGLAALQW 324 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Amer--------GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL 324 (368)
+..+..+.+..|++-+ .++|..- ...+..|..++.. |+|.+|+.+|++|+.+-+. ..-...+.+.+
T Consensus 191 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~l 264 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAV--QMDVLDG---RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNR 264 (474)
T ss_dssp HHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHH
Confidence 4456667777777655 4455543 3356778888888 9999999999999998542 22456788899
Q ss_pred HHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 325 SICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
+.||...|+.++|+..|++.. .+|+-
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999974 56653
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.44 E-value=0.025 Score=49.04 Aligned_cols=90 Identities=7% Similarity=0.011 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhcCCcC-ChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHH--HHHHHHHHHHhcC
Q 017641 256 RTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSICQDSLH 332 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~V-d~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe--aqLwLAiAydA~G 332 (368)
...+.+.-|.+-.-..- ++.......-.+..|...+..|+|.+|+.+|++|++........-++ +...++.||...|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 34455555554333222 22222222223347889999999999999999999965444444344 4577999999999
Q ss_pred ChHHHHHHHHHHh
Q 017641 333 RPKEARIMYEKLQ 345 (368)
Q Consensus 333 R~~EAiaLYkkL~ 345 (368)
+.++|+..|++..
T Consensus 170 ~~~~A~~~~~~al 182 (293)
T 3u3w_A 170 YLKKGIDLFEQIL 182 (293)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999975
No 127
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.43 E-value=0.0074 Score=48.50 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
.+..|..++..|+|.+|+..|++++..-+... ...+...|+.+|...|+.++|+..|++
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 45556666666666666666666655543221 123455556666666666666666654
No 128
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.42 E-value=0.0097 Score=53.13 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc---cCc----cchH--------------HHHHHHHHHHHhcCChH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV---FKS----ELHG--------------LAALQWSICQDSLHRPK 335 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~---~~S----~LGG--------------eaqLwLAiAydA~GR~~ 335 (368)
..+++..+--|+.+|..|.|++|..+|.+|++..- .++ -+|. |+..+.|.||-.+++.+
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 45566677889999999999999999999965443 222 1221 68899999999999999
Q ss_pred HHHHHHHHHh-cCCCHHHH
Q 017641 336 EARIMYEKLQ-SHPNALVS 353 (368)
Q Consensus 336 EAiaLYkkL~-sHP~~eVr 353 (368)
+||++-+.|- +.-.+.|-
T Consensus 140 ~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 140 DAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHHhcCCchhcCHHHH
Confidence 9999988873 55555553
No 129
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.41 E-value=0.01 Score=49.63 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
.+..+..+.+..|++-.. .+|. .....+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.+|...
T Consensus 32 ~~~~~~~~A~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQ--AAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNE 102 (327)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHH--hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHc
Confidence 344455666666654432 2221 34455667889999999999999999998875443 56778889999999
Q ss_pred CChHHHHHHHHHHh-cCCC
Q 017641 332 HRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~ 349 (368)
|+.++|+.+|+++. .+|.
T Consensus 103 ~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHhCCc
Confidence 99999999999885 4554
No 130
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.39 E-value=0.019 Score=56.10 Aligned_cols=67 Identities=10% Similarity=-0.047 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..+......|..+...|+|.+|+++|++|++. ++....-=|..-..|+..|...|+.+||+.||++-
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44444555688999999999999999999754 45555555788889999999999999999999874
No 131
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.022 Score=47.72 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc-----cchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
..+..|..++..|+|.+|+.+|+++++..+... .-...+...++.||...|+.++|+..|++.. .+|+
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 355667778888888888888888877653322 1223566677777777788888877777764 3443
No 132
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.35 E-value=0.0043 Score=46.75 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=43.6
Q ss_pred hcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 292 erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
..|+|.+|+.+|++|+++- ....-...+.+.|+.||-..|+.++|+..|++.. .+|+-
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3689999999999999853 1123356888999999999999999999999985 57763
No 133
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.35 E-value=0.011 Score=51.81 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH--HHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSL-HRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~-GR~~EAiaLYkkL~ 345 (368)
.+......|..+...|+|.+|+.+|++|+++.+......+ .+...++.+|... |+.++|+..|++..
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3455667899999999999999999999998765544443 4556689999995 99999999999874
No 134
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.34 E-value=0.011 Score=50.85 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
.+..+..+.+..|++-. .++|. .....+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||...
T Consensus 75 ~~~g~~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAV--QQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDN----QTALMALAVSFTNE 145 (368)
T ss_dssp HHTTCHHHHHHHHHHHH--HSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHc
Confidence 34445556666665544 22332 24455666777888888888888888877765432 45677778888888
Q ss_pred CChHHHHHHHHHHh-cCCCH
Q 017641 332 HRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~~ 350 (368)
|+.++|+.+|+++. .+|..
T Consensus 146 g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTT
T ss_pred CCHHHHHHHHHHHHHhCcCc
Confidence 88888888887774 45543
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.33 E-value=0.01 Score=52.34 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 3557888999999999999999999999987654 5678889999999999999999999975 57753
No 136
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.32 E-value=0.02 Score=55.49 Aligned_cols=72 Identities=14% Similarity=-0.015 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 273 DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 273 d~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.+.--..+...-..|..++..|+|.+|+++|+++++. ++.....=|..-..|+..|...|+.+||+.+|++-
T Consensus 322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3334455566666789999999999999999998754 56677777888999999999999999999999875
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.31 E-value=0.01 Score=57.13 Aligned_cols=85 Identities=11% Similarity=0.029 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (368)
..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|+++-+.. ..+...++.||...|+.++
T Consensus 22 ~~~A~~~~~~Al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 22 YENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Confidence 334445554333 334544 3456788999999999999999999999885543 5678889999999999999
Q ss_pred HHHHHHHHh-cCCCH
Q 017641 337 ARIMYEKLQ-SHPNA 350 (368)
Q Consensus 337 AiaLYkkL~-sHP~~ 350 (368)
|+..|++.. .+|+.
T Consensus 93 A~~~~~~al~~~p~~ 107 (477)
T 1wao_1 93 ALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999974 57753
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.29 E-value=0.017 Score=50.09 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc---CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.++.-....|..++..|+|.+|+.+|++|++.... ....-..+-..++.||-..|+.++|+..|++..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445677899999999999999999999975542 334445577889999999999999999998763
No 139
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.28 E-value=0.0091 Score=52.60 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 252 ar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
.+..+..+.++.|++-. ..+|.. ....+..+..++.+|.+.+|+..|++++..-|.+ -++.+.|+.+|...
T Consensus 162 ~~~g~~~~A~~~l~~~~--~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~ 232 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIP--LQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQV 232 (287)
T ss_dssp HHTTCHHHHHHHHTTSC--GGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHhCc--hhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHc
Confidence 44556667777776443 344422 2335566677778888888888888888876654 35677888888888
Q ss_pred CChHHHHHHHHHHh-cCCCH
Q 017641 332 HRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~~ 350 (368)
||.++|+..|+++. .+|+.
T Consensus 233 g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 233 GRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp TCHHHHHHHHHHHHHHCTTG
T ss_pred ccHHHHHHHHHHHHhccccc
Confidence 88888888888874 57764
No 140
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.27 E-value=0.015 Score=51.78 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=33.1
Q ss_pred HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC
Q 017641 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP 348 (368)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP 348 (368)
+++.|+|.+|+..|+++++..+.. ..+...+++||...||.++|+..|++. ..+|
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhCchHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345566666666666666664432 334455666666666666666666664 3455
No 141
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.20 E-value=0.024 Score=47.40 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
+..+..|..++..|+|.+|+.+|+++++.-+. ...+.+.++.||...|+.++|+..|++.. .+|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 44688999999999999999999999987654 45677889999999999999999999985 5664
No 142
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.18 E-value=0.012 Score=49.24 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
..+..|..++..|+|.+|+.+|+++++.-+. ...+.+.++.||...|+.++|+..|++.. .+|+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 3556789999999999999999999988654 45778889999999999999999999985 4664
No 143
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.18 E-value=0.015 Score=57.61 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc----cCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..++..++....+..+|+|.+|+++|+++++... .....=..+.-.|+.+|...|+.++|+.||++.
T Consensus 307 ~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4566777788889999999999999999987542 222223667778999999999999999988874
No 144
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.12 E-value=0.028 Score=49.51 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
+..|..++..|++.+|+.+|+++++..+.. ..+...++.+|...|+.++|+.+|++.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555666666666666666666554432 234445555555556666666655555
No 145
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.11 E-value=0.012 Score=48.65 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
+...+..|..++..|+|.+|+.+|+++++.... ....-..+...++.+|...|+.++|+..|++.
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333444455555555555555555554443322 23444444444555555555555555554443
No 146
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.11 E-value=0.044 Score=46.14 Aligned_cols=65 Identities=18% Similarity=0.061 Sum_probs=47.3
Q ss_pred HHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHHH
Q 017641 282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNALV 352 (368)
Q Consensus 282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~eV 352 (368)
..+..|..++. .|++.+|+.+|++|++.- ...+...|+.+|.. .++.++|+..|++....-+...
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 112 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG 112 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccH
Confidence 34556777777 888888888888887651 46677778888888 8888888888888765444433
No 147
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.04 E-value=0.063 Score=47.22 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc--hHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--HGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--GGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..+...+..|..++..|+|.+|+.+|+++++........ -..+...++.+|-..|+.++|+.+|++..
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344566778999999999999999999998887653332 23467778999999999999999998764
No 148
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.04 E-value=0.0042 Score=59.88 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.++..+..|..++..|+|.+|+.+|++|++.-+.. ..+...++.||...|+.++|+..|++.. .||.-
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34455677899999999999999999999986554 6778889999999999999999999985 67753
No 149
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.03 E-value=0.014 Score=53.17 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
..+..|..++..|+|.+|+.+|++|+.+-+.+ ..+.+.++.||..+|+.++|+..|++.. .+|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34667999999999999999999999986644 5678999999999999999999999985 4553
No 150
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.03 E-value=0.028 Score=50.03 Aligned_cols=59 Identities=17% Similarity=-0.013 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.+..|..++..|+|.+|+..|++ .-.-++.+.++.+|...||.++|+.+|+++. .+|+.
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 56678888888888888888877 1233566777888888888888888888875 56664
No 151
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.01 E-value=0.031 Score=49.77 Aligned_cols=90 Identities=9% Similarity=-0.042 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhcCCcC-ChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc---chHHHHHHHHHHHHhc
Q 017641 256 RTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL 331 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~V-d~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~ 331 (368)
+..+.+..|++-..+-- .+.....+...+..|..++..|+|.+|+.+|++|++....... .-+.+...++.||...
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 197 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL 197 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence 34445555555443311 1223345666788899999999999999999999988766532 2356777889999999
Q ss_pred CChHHHHHHHHHHh
Q 017641 332 HRPKEARIMYEKLQ 345 (368)
Q Consensus 332 GR~~EAiaLYkkL~ 345 (368)
|+.++|+..|++..
T Consensus 198 g~~~~A~~~~~~al 211 (383)
T 3ulq_A 198 KQYEDAISHFQKAY 211 (383)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998764
No 152
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.024 Score=50.40 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch-------------HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------------GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-------------GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+++++.++..|+|.+|++.|.++++..+..+... -.+-.+|+.+|...|+.++|+.+|+++.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56677788888888888888888877666554332 1345677888888888888888888764
No 153
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.93 E-value=0.021 Score=50.32 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc--chHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
......|..+.. |+|.+|+.+|++|++..+.... .-..+...++.+|...|+.++|+..|++..
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455777766 9999999999998887765332 235666778889999999999999998874
No 154
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.93 E-value=0.02 Score=54.65 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (368)
.+.+..|++- +..+|... ...+..|..++..|+|.+|+.+|++|+++-+.. ..+.+.|+.||...|+.++|
T Consensus 6 ~~A~~~~~~a--l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 6 PRELLQLRAA--VRHRPQDF---VAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------CCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--HHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence 3444555433 34445432 346778999999999999999999999986654 56788999999999999999
Q ss_pred HHHHHHHh-cCCCH
Q 017641 338 RIMYEKLQ-SHPNA 350 (368)
Q Consensus 338 iaLYkkL~-sHP~~ 350 (368)
+..|++.. .+|+-
T Consensus 77 ~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 77 AVLLQQASDAAPEH 90 (568)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999985 57753
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.92 E-value=0.053 Score=47.04 Aligned_cols=67 Identities=6% Similarity=-0.068 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
...-.+..|..++..|+|.+|+.+|++|+.........- ..+-.+++++|...|+.++|+..|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334456678888999999999999999998765543333 4566789999999999999999998863
No 156
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.90 E-value=0.017 Score=49.79 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+...+..|..++..|+|.+|+.+|++|++...... ..-..+...++.||...|+.++|+..|++..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556678888899999999999999887765442 2225667778999999999999999988853
No 157
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.85 E-value=0.027 Score=49.60 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..+...|++.+|+.+|+++++..+.. ..+...++.+|...|+.++|+.+|++.. .+|+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456888999999999999999999876543 5678889999999999999999999985 5775
No 158
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.84 E-value=0.021 Score=51.09 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.+...+..|..++..|+|.+|+++|++|++.... ....-+.+...++.||...|+.++|+..|++.
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455666667777777777777776665432 22233455566666777777777776666665
No 159
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.82 E-value=0.05 Score=53.96 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh----cccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
-..+......|..+...|+|.+|+++|++|++. ++.....=+..-..||..|...|+.+||+.||++-
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345555666788999999999999999999765 45555555888889999999999999999999875
No 160
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.048 Score=48.82 Aligned_cols=77 Identities=14% Similarity=0.014 Sum_probs=62.5
Q ss_pred HHHHHHHHHHh---cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 017641 282 KALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 357 (368)
Q Consensus 282 ea~~~Gk~Ame---rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 357 (368)
..+..|..++. .|+|.+|+.+|++++..-+.. ..+.+.++.||...|+.++|+..|++.. .+|.-.-..++.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 45667888899 999999999999999876543 5678889999999999999999999985 688766555555
Q ss_pred HHhhh
Q 017641 358 QFMFS 362 (368)
Q Consensus 358 rLlyi 362 (368)
.++..
T Consensus 490 ~~~~~ 494 (514)
T 2gw1_A 490 TFAEA 494 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 161
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.77 E-value=0.1 Score=47.30 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhcCCcCChh--hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc
Q 017641 254 EERTRQLLAAYKKSVGLNVDPK--LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (368)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vd~~--~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (368)
..+..+.+..|++-..++-+.. ....+...+..|..++..|+|.+|+.+|++++..-+. ..+.+.++.+|...
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-----PNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHh
Confidence 3456666666665553332221 1223444556677777777777777777777665432 35555666666666
Q ss_pred CChHHHHHHHHHHh-cCCC
Q 017641 332 HRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~ 349 (368)
|+.++|+.+|+++. .+|+
T Consensus 290 ~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHhccCCC
Confidence 66666666666653 3443
No 162
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.73 E-value=0.031 Score=54.56 Aligned_cols=65 Identities=12% Similarity=-0.104 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhc----ccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
+...++.++.+-..|+|.+|+++|+++++.. ......=..+--.|+.+|...|+.++|+.||++.
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3455667777778899999999999998753 3333333666778999999999999999999875
No 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.71 E-value=0.031 Score=49.80 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+...+..|..++..|+|.+|+.+|++|++...... ..-+.+...++.||...|+.++|+..|++..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556667777788888888888888777655332 3334566667788888888888887777764
No 164
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.71 E-value=0.072 Score=47.64 Aligned_cols=89 Identities=7% Similarity=-0.084 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhcCCcCC-hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc---chHHHHHHHHHHHHhcC
Q 017641 257 TRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSLH 332 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd-~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~G 332 (368)
..+.+..|++-..+--. +.....++..+..|..++..|+|..|+.+|++|++....... .-+.+...++.||...|
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~ 196 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK 196 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence 34455555554433211 123456667788899999999999999999999988776443 23566678999999999
Q ss_pred ChHHHHHHHHHHh
Q 017641 333 RPKEARIMYEKLQ 345 (368)
Q Consensus 333 R~~EAiaLYkkL~ 345 (368)
+.++|+..|++..
T Consensus 197 ~~~~A~~~~~~al 209 (378)
T 3q15_A 197 HYDKALPHLEAAL 209 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998864
No 165
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.46 E-value=0.067 Score=49.56 Aligned_cols=64 Identities=9% Similarity=-0.068 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.+..|..++..|+|.+|+.+|+++++.-+.. ..+...|+.+|...|+.++|+.+|+++. .+|+-
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 3455888899999999999999999886543 4778889999999999999999999985 67754
No 166
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.43 E-value=0.12 Score=43.47 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=53.3
Q ss_pred HHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHHH
Q 017641 282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNALV 352 (368)
Q Consensus 282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~eV 352 (368)
..+..|..++. .|++.+|+.+|++|++.- ...+.+.|+.+|.. .++.++|+..|++....-+...
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a 148 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDG 148 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHH
Confidence 34455788888 999999999999998861 56888999999999 9999999999999875544443
No 167
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.38 E-value=0.04 Score=55.20 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
..+..|..++..|+|.+|+..|++|++.-+.. .++...++.||...|+.++|+..|++.. ..|+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 499 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG 499 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 36677889999999999999999998876654 4577778899999999999999998874 4564
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.28 E-value=0.032 Score=50.18 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=47.5
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccCccc--h---HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--H---GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--G---GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
-.|...+..|+|.+|+++|++|+++....... + -.+-..++.+|...|+.++|+..|++..
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 36899999999999999999999875432111 1 1233468999999999999999998863
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.23 E-value=0.099 Score=45.91 Aligned_cols=67 Identities=16% Similarity=0.003 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH--HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+...+..|..++..|+|.+|+.+|++|+...+......+ .+...++.+|-..|+.++|+.+|++..
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445667789999999999999999999988766544443 345679999999999999999999874
No 170
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.19 E-value=0.057 Score=47.43 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc----cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
.+...+..|..++..|+|.+|+.+|+++++...... .....+...++.+|-..|+.++|+.+|++..
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344456779999999999999999999998775322 3345667778999999999999999998864
No 171
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.18 E-value=0.032 Score=52.79 Aligned_cols=63 Identities=8% Similarity=-0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
-+..|..++..|+|.+|+..|++|+++-+.+. .+-..++.||...|+.++|+..|+++. .+|+
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 45567777778888888888888887766553 455667888888888888888888874 5664
No 172
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.12 E-value=0.1 Score=43.77 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC----ChHHHHHHHHHHhc
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH----RPKEARIMYEKLQS 346 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G----R~~EAiaLYkkL~s 346 (368)
..+..|..++..|++.+|+.+|++|.+. =...+...|+++|.. + +.++|+.+|++...
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 4455666666666666666666666553 124566666666666 5 66666666666643
No 173
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.85 E-value=0.046 Score=54.79 Aligned_cols=93 Identities=6% Similarity=-0.070 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc----------------
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---------------- 316 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L---------------- 316 (368)
+..+..+.+..|++-. .++|.. .+..+..|..++..|+|.+|+.+|++|+++-+.....
T Consensus 445 ~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 445 DLGDVAKATRKLDDLA--ERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp HHTCHHHHHHHHHHHH--HHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred hcCCHHHHHHHHHHHh--ccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence 4455667777776554 333332 2234455556666666666666666665554433211
Q ss_pred -------------hHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 317 -------------HGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 317 -------------GGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
...+.+.++.||...|+.++|+..|++.. .+|+-
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 13466778888888888888888888874 57764
No 174
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.85 E-value=0.096 Score=49.53 Aligned_cols=84 Identities=7% Similarity=0.054 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCc-hhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGk-Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (368)
..+.|..|++-. .++|.... .-+..|..++..|+ |.+|+.+|++|+.+-+.+ -.+-..++.||..+|+.+
T Consensus 113 ~~~Al~~~~~al--~l~P~~~~---a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 113 SERAFKLTRDAI--ELNAANYT---VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp CHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHH--HhCccCHH---HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHccCHH
Confidence 445555555333 34444322 24566888899997 999999999998877664 345667888999999999
Q ss_pred HHHHHHHHHh-cCCC
Q 017641 336 EARIMYEKLQ-SHPN 349 (368)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (368)
+|+..|++.. ..|.
T Consensus 184 eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 184 QELEFIADILNQDAK 198 (382)
T ss_dssp THHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcc
Confidence 9999999885 4554
No 175
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.60 E-value=0.04 Score=51.74 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (368)
..|-.|..++..|+|.+|+.+|+++.... ...+...+.++|.+||..+|++++|+..|++...-|
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 56888999999999999999999765433 122457899999999999999999999999996433
No 176
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.55 E-value=0.22 Score=47.30 Aligned_cols=130 Identities=9% Similarity=0.087 Sum_probs=86.9
Q ss_pred CCCccccCCCcccCCCCccCcHHHH---HH--------------HHHHHHHHHHHHHhhcCCcCC-hhh----HHHHH--
Q 017641 226 GNISKTFGGGRTIRPGDVLETAEAR---AA--------------KEERTRQLLAAYKKSVGLNVD-PKL----KSECE-- 281 (368)
Q Consensus 226 ~NISkayGGGR~IrpGe~lEteEEk---aa--------------r~~rtke~LaaYrk~~Gl~Vd-~~~----~~e~e-- 281 (368)
..|--..|+|..+.+.. .+.+=.. .. ..+...+.|+-||...=-++. ..- ....+
T Consensus 91 ~~i~~~~~~GY~l~~~~-~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~ 169 (388)
T 2ff4_A 91 RVVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVED 169 (388)
T ss_dssp HHHEEECSSEEEECCCG-GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHH
T ss_pred ceEEEEECCEEEEcCCC-ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH
Confidence 34666788999888653 2222211 11 123356667777655433331 111 11112
Q ss_pred ---HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCH
Q 017641 282 ---KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNA 350 (368)
Q Consensus 282 ---ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~ 350 (368)
...+....++..|++.+|+..++.++..-|..-+ +..+|..||-..||+.+|+..|++++. -|.+
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 2223467788999999999999999888777655 456778899999999999999999864 5999
Q ss_pred HHHHHHHHHh
Q 017641 351 LVSKRARQFM 360 (368)
Q Consensus 351 eVrKQAkrLl 360 (368)
+++.--++|+
T Consensus 246 ~l~~l~~~il 255 (388)
T 2ff4_A 246 TLRALNERIL 255 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877765
No 177
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.42 E-value=0.23 Score=43.49 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 258 ke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (368)
.+.+..|++-+-. ++|.... .-+..|..+...|++.+|...|++|+..-+.+.. .+-+.++.++...|+.++|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNML---LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHH
Confidence 4455555544320 3444322 2344566777788888888888888875443321 2666677777788888888
Q ss_pred HHHHHHHhc
Q 017641 338 RIMYEKLQS 346 (368)
Q Consensus 338 iaLYkkL~s 346 (368)
+.+|++...
T Consensus 154 ~~~~~~a~~ 162 (308)
T 2ond_A 154 RMIFKKARE 162 (308)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888753
No 178
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.05 E-value=0.16 Score=46.99 Aligned_cols=65 Identities=8% Similarity=-0.004 Sum_probs=51.0
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhccc---CccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
..|..++..|+|.+|+.+|+++++..+. ....-..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3577888899999999999999887542 222235677789999999999999999999974 5663
No 179
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.99 E-value=0.78 Score=40.06 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=35.8
Q ss_pred cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
.|++.+|+..|++|+...+.. ..+-+.++..+...|+.++|+++|++...
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 578888888888887776543 34555566777777888888888877764
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.82 E-value=0.34 Score=38.45 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 017641 281 EKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA 350 (368)
Q Consensus 281 eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~ 350 (368)
...+..|..++. .+++.+|+.+|++|.+. =...++.+|+++|.. ..+.++|+..|++-..+-+.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 345666777777 78889999999998765 236788889999988 88899999999888655444
No 181
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.36 E-value=0.16 Score=37.49 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 017641 297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (368)
.+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|++.. .+|..
T Consensus 2 ~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CCHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 57899999999876644 4678889999999999999999999985 56653
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.31 Score=43.29 Aligned_cols=66 Identities=9% Similarity=0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCc--cchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+...+..|..+++.|+|.+|+.+|+.++..+.... ..-.++.+.++.+|-+.|+.++|+.+|++..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44556779999999999999999999877654432 3446777888999999999999999999863
No 183
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=93.19 E-value=1.4 Score=36.71 Aligned_cols=71 Identities=7% Similarity=-0.087 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 017641 280 CEKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-H-----RPKEARIMYEKLQSHPN 349 (368)
Q Consensus 280 ~eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-G-----R~~EAiaLYkkL~sHP~ 349 (368)
....+..|..++. .+++.+|+.+|++|.++ +. ...++.+|+++|..- | +.++|+..|++-..+-+
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4456777888888 78999999999999887 22 244889999999754 4 89999999999876555
Q ss_pred HHHHHH
Q 017641 350 ALVSKR 355 (368)
Q Consensus 350 ~eVrKQ 355 (368)
.+-...
T Consensus 200 ~~A~~~ 205 (212)
T 3rjv_A 200 DTGCEE 205 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.18 E-value=0.29 Score=33.68 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.+|...|
T Consensus 24 ~~~~A~~~~~~a~--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 24 DYDEAIEYYQKAL--ELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence 3445555555443 233433 2346778999999999999999999999986543 456677788776554
No 185
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.89 E-value=0.65 Score=35.71 Aligned_cols=63 Identities=16% Similarity=-0.013 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCc---hhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 017641 283 ALKDGDSLMDSGK---LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 283 a~~~Gk~AmerGk---Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (368)
.+..|..+|-.+. ..+|..+|++|+..=+.+ ..+.+.|+..+-..|+.++||..|+++. ..|.
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556777764443 899999999999976654 4678888999999999999999999985 5665
No 186
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.71 E-value=0.12 Score=36.93 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (368)
+..+..+.+..|++-+ .++|.... ...+..|..++..|+|.+|+.+|++|+.+-+...... .+ +
T Consensus 12 ~~~~~~~A~~~~~~al--~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~ 75 (99)
T 2kc7_A 12 NQGDIENALQALEEFL--QTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------K 75 (99)
T ss_dssp HHTCHHHHHHHHHHHH--HHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------H
T ss_pred HcCCHHHHHHHHHHHH--HHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------H
Confidence 3444556666666544 34454332 1467889999999999999999999999887665432 11 5
Q ss_pred ChHHHHHHHHHHh
Q 017641 333 RPKEARIMYEKLQ 345 (368)
Q Consensus 333 R~~EAiaLYkkL~ 345 (368)
+..+|+..|+++.
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 6677788887763
No 187
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=92.35 E-value=0.38 Score=43.22 Aligned_cols=60 Identities=13% Similarity=-0.016 Sum_probs=41.2
Q ss_pred HHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 017641 289 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (368)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (368)
.....|.|.+|+.+|++|+..-+.. ..+...++.+|...|+.++|+..|++.. .||+-..
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 3345577778888888877765443 4566788999999999999999999874 7887543
No 188
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.24 E-value=0.54 Score=36.16 Aligned_cols=38 Identities=8% Similarity=-0.123 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA 321 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaq 321 (368)
.+-.|..+|..|+|++|+.+|+++++..+. +.--..++
T Consensus 46 ~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 46 LSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 455599999999999999999999998887 54433333
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.46 E-value=1.3 Score=35.08 Aligned_cols=59 Identities=8% Similarity=-0.042 Sum_probs=50.4
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA 350 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~ 350 (368)
.|..++..+.+.+|+.+|++|.+. =...++..|+++|.. ..+.++|+..|++-...-++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 93 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQ 93 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCH
Confidence 788888888899999999999886 246899999999998 89999999999998654443
No 190
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=91.08 E-value=1.5 Score=41.29 Aligned_cols=59 Identities=7% Similarity=0.040 Sum_probs=48.0
Q ss_pred HhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 017641 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS 353 (368)
Q Consensus 291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr 353 (368)
+..|++.+|...|++|++..|.. ..+-+.++..+...|+.++|+.+|++.. .||+.++-
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw 82 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLW 82 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH
Confidence 56899999999999999988765 3344446777778999999999999996 68987653
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=90.35 E-value=0.65 Score=43.73 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=38.1
Q ss_pred cCchh-------hhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 293 SGKLK-------EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 293 rGkYr-------~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
.|++. +|+..|++|+..+.++ ...+-+.++..++..|+.++|+.+|+++..
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 68876 8888888888743332 245566678888888999999999988764
No 192
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.21 E-value=2.3 Score=36.91 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcC---chhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHH
Q 017641 281 EKALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRA 356 (368)
Q Consensus 281 eea~~~Gk~AmerG---kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQA 356 (368)
+..|+-|-.+.... .+++++.+||.++..-.+ .-.-+.-..||++|=.+|+.++|+..+++| +..|+-. ||
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~---QA 107 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---QA 107 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---HH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HH
Confidence 44677788888877 888999999999986511 134578899999999999999999999999 4788643 44
Q ss_pred HHHh
Q 017641 357 RQFM 360 (368)
Q Consensus 357 krLl 360 (368)
+.|.
T Consensus 108 ~~Lk 111 (152)
T 1pc2_A 108 KELE 111 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 193
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=89.10 E-value=2.5 Score=39.33 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=48.4
Q ss_pred HHHHHHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 017641 282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL 351 (368)
Q Consensus 282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e 351 (368)
..+..|..++. .+++.+|+.+|++|.+. =...++..|+.+|.. .++.++|+..|++...+-+..
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 148 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS 148 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 34555777887 88899999999998764 135778888888888 788899999998886544433
No 194
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=89.08 E-value=2.5 Score=39.32 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=32.5
Q ss_pred HHHHHHh----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCC
Q 017641 286 DGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPN 349 (368)
Q Consensus 286 ~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~ 349 (368)
.|..++. .+++.+|+.+|++|.+.- .-.+..+|+.+|.. .++.++|+.+|++.....+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444 566666666666665431 13455666666664 5666666666666554333
No 195
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=87.39 E-value=2.6 Score=40.06 Aligned_cols=65 Identities=9% Similarity=-0.058 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
..+-.|..++..|+|.+|+.+|+++++.-+ +...=++.+-++.+|-..||.+.|+.++++++ .+|
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 356779999999999999999999877554 34556778888999999999999999999996 688
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=87.18 E-value=1.7 Score=42.77 Aligned_cols=68 Identities=18% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 017641 289 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF 361 (368)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly 361 (368)
.++-.|++.+|+.++++|+.+= ++ -.+-+.++.+|...|+.++|++.|++- .-.|...+-.-++.|.|
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln--~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLE--MS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred HHHhCCCHHHHHHHHHHHHhcC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence 3455799999999999999994 33 234467899999999999999999776 57999988777776665
No 197
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.09 E-value=3.8 Score=38.83 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchH-------------------HHHHHHHHHHHhcCChHHH
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EA 337 (368)
..+++..+..|..+...|...+|+..|+.|+.+... .-|.| .+...++-++-+.|++.+|
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG-~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRG-PVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-STTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 578889999999999999999999999999988732 22332 1333466778899999999
Q ss_pred HHHHHHHh-cCCCHHH
Q 017641 338 RIMYEKLQ-SHPNALV 352 (368)
Q Consensus 338 iaLYkkL~-sHP~~eV 352 (368)
+..+++|. .||..+-
T Consensus 191 ~~~l~~~~~~~P~~E~ 206 (388)
T 2ff4_A 191 IAELEALTFEHPYREP 206 (388)
T ss_dssp HHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 98888885 7998773
No 198
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=86.47 E-value=1 Score=45.28 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch---------------------HHHHHHHHHHHHhcCChHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------------GLAALQWSICQDSLHRPKEARIM 340 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------------GeaqLwLAiAydA~GR~~EAiaL 340 (368)
.-...+..++.-|+|.+||+.|++|...-.-+.-+. .+-...++-+|+..|+++|||.+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 445668888899999999999998832110011111 11122355788899999999888
Q ss_pred HHHHh
Q 017641 341 YEKLQ 345 (368)
Q Consensus 341 YkkL~ 345 (368)
+++--
T Consensus 230 Le~aL 234 (449)
T 1b89_A 230 LEAAL 234 (449)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88763
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=85.86 E-value=1.1 Score=32.95 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 317 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG 317 (368)
+..+.+..|++-+ .++|.... ..+..|..++..|+|.+|+.+|++|+++.+......
T Consensus 22 ~~~~A~~~~~~al--~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 22 NASRALALFEELV--ETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp CHHHHHHHHHHHH--HHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHH--HhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 3444555555443 34454322 467789999999999999999999998866554444
No 200
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=84.29 E-value=1 Score=45.18 Aligned_cols=51 Identities=18% Similarity=0.019 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.-...|..+++.|+|.+|+.+|..+ .-..-||.||--+|+.++|+..|++.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 4567799999999999999999987 34556899999999999999999999
No 201
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=83.18 E-value=3.3 Score=36.48 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----ccchHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 017641 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAA-LQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaq-LwLAiAydA~GR~~EAiaLYkkL 344 (368)
.-...|..|..+|+.|+|-+|=+.||.+-...... .-+.|.|| +--|+-+-..|+..=|..|+++-
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34457999999999999999999999997766544 46889999 99999999999999999999864
No 202
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=82.19 E-value=1.7 Score=34.80 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhccc--CccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.|..|..+|+.|+|-+|=+.||.+-...+. +.-+.|.+|+--|+-+-..|+. |..|+++-
T Consensus 4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 478899999999999999999999766632 3458899998888877777887 88888764
No 203
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=82.14 E-value=0.36 Score=45.59 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCch---hhhhHHHHHHHhhcccCccchHHHHHHHHHH
Q 017641 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL---KEALPFYEKVMNKMVFKSELHGLAALQWSIC 327 (368)
Q Consensus 251 aar~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkY---r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA 327 (368)
+-+..+..+.+.-|++-. .....+..+..|..++..|.+ .+|+.+|++|.+. ...++..|+.+
T Consensus 13 ~~~~g~~~~A~~~~~~aa-------~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLA-------ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHTCCTGGGTCC-----------------------------------CHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 344556666666665421 112233445567778888888 8888888888755 34667788886
Q ss_pred HHhcC-----ChHHHHHHHHHHh--cCCC
Q 017641 328 QDSLH-----RPKEARIMYEKLQ--SHPN 349 (368)
Q Consensus 328 ydA~G-----R~~EAiaLYkkL~--sHP~ 349 (368)
|...| +.++|+..|++.. .|+.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~ 107 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGN 107 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence 66665 6678888888875 3444
No 204
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=81.24 E-value=3.1 Score=39.17 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=27.1
Q ss_pred HhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC-----ChHHHHHHHHHHh
Q 017641 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----RPKEARIMYEKLQ 345 (368)
Q Consensus 291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----R~~EAiaLYkkL~ 345 (368)
...|++.+|+.+|++|.+.= ...++.+|+.+|. .| +.++|+..|++..
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 34566666666666655321 3455566666665 44 5666666665554
No 205
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=80.54 E-value=6.7 Score=37.27 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=56.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcC--------CcCChhhHHHHHHHHHH-----------HHHHHhcCc----------
Q 017641 245 ETAEARAAKEERTRQLLAAYKKSVG--------LNVDPKLKSECEKALKD-----------GDSLMDSGK---------- 295 (368)
Q Consensus 245 EteEEkaar~~rtke~LaaYrk~~G--------l~Vd~~~~~e~eea~~~-----------Gk~AmerGk---------- 295 (368)
.|+|+.+++..+.++++++|+.-++ -+.+.+..+-+..++.. +..+..-|.
T Consensus 10 ~~~~~~~~~~~~~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~ 89 (331)
T 3dss_A 10 TSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAAL 89 (331)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHH
Confidence 3566666666666677777764332 25555555555544433 444433343
Q ss_pred hhhhhHHHHHHHhhcccCccchHHHHHH--HHHHHHhcCC--hHHHHHHHHHHh-cCC
Q 017641 296 LKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHR--PKEARIMYEKLQ-SHP 348 (368)
Q Consensus 296 Yr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR--~~EAiaLYkkL~-sHP 348 (368)
|.+++.+++.++..-|-+ -++| -..+++.+|+ .+++++.|.++. .||
T Consensus 90 l~~EL~~~~~~L~~~PKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp 141 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADE 141 (331)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 678888888887654433 2333 3456667774 678888887774 565
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=80.14 E-value=3.7 Score=47.38 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccC---ccch--------------------HHHHHHHHHHHHhcCChHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---SELH--------------------GLAALQWSICQDSLHRPKEARI 339 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~---S~LG--------------------GeaqLwLAiAydA~GR~~EAia 339 (368)
-++.|..+...|+|.+|+++|..|....... +.+| -.....++.+|+..|+.++|+.
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 3456888889999999999998877655221 1111 1123457888888888888888
Q ss_pred HHHHH
Q 017641 340 MYEKL 344 (368)
Q Consensus 340 LYkkL 344 (368)
+|.+.
T Consensus 1217 ~Y~kA 1221 (1630)
T 1xi4_A 1217 LYNNV 1221 (1630)
T ss_pred HHHhh
Confidence 88875
No 207
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.42 E-value=4.7 Score=35.90 Aligned_cols=61 Identities=5% Similarity=-0.104 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCc-----cchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (368)
.++..+.+++.|.|..|+.....++.....+- .+.-++.+|+|.+|=.-+.+..|...|++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 57788999999999999999999777764333 35677999999999999999999999988
No 208
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.08 E-value=3.6 Score=42.33 Aligned_cols=55 Identities=9% Similarity=0.040 Sum_probs=45.2
Q ss_pred HHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 017641 289 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 347 (368)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (368)
.++..|++..|..+|+... ....--...+.|++-++++.|+.++|..+|++|..+
T Consensus 294 ~Alr~~d~~~a~~~~~~l~----~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLP----MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSC----TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHCCCHHHHHHHHHHcc----ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 4677899999999886533 333335788999999999999999999999999764
No 209
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=77.35 E-value=5.8 Score=33.18 Aligned_cols=49 Identities=29% Similarity=0.550 Sum_probs=39.3
Q ss_pred HHHHHhhcCCcCChh-hH--HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 261 LAAYKKSVGLNVDPK-LK--SECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 261 LaaYrk~~Gl~Vd~~-~~--~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
.+.|-++-||.+..- ++ .-++..+..|+.+|.-|.|.+|+.+||+|..+
T Consensus 31 F~~YV~kn~Lkel~~~ll~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 31 FENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 345667778877654 43 55778899999999999999999999999754
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=73.14 E-value=5.3 Score=34.60 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhc-----------CchhhhhHHHHHHHhhcccC
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS-----------GKLKEALPFYEKVMNKMVFK 313 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Amer-----------GkYr~AV~~lEkA~~~v~~~ 313 (368)
.+.+.+..|++-. .+||..... .+..|..++.. |+|.+|+.+|++|+++=|.+
T Consensus 61 ~~~eAi~~le~AL--~ldP~~~~A---~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 61 MIQEAITKFEEAL--LIDPKKDEA---VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHH--HHCTTCHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHH--HhCcCcHHH---HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 4678888887544 777775443 67788888876 48999999999999998765
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=72.28 E-value=5.4 Score=46.06 Aligned_cols=51 Identities=18% Similarity=0.023 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
..+..|+.+++.|+|.+|+.+|.+|- --.-++.||.-+|+.++|+..|++-
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~------------ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh------------HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 35568999999999999999999972 4455899999999999999999876
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=71.19 E-value=9.7 Score=36.14 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=42.9
Q ss_pred HHHHHHHHHHh--cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 017641 282 KALKDGDSLMD--SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 282 ea~~~Gk~Ame--rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (368)
..+.++-..+- .++|.+|+..|+.+.+..+.. ....+.|. ||...|+.+||..+.++|. .||
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~----~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTW----KTQLGLLN-LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----HHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc----ccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcc
Confidence 34445533443 449999999999987766521 11233444 9999999999999999875 343
No 213
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=68.31 E-value=64 Score=29.83 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=47.6
Q ss_pred cCChhhHHHHHHHHHH-----------HHHHHhcC--chhhhhHHHHHHHhhcccCccchHHHHHHHHHHH----Hhc--
Q 017641 271 NVDPKLKSECEKALKD-----------GDSLMDSG--KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ----DSL-- 331 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~-----------Gk~AmerG--kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy----dA~-- 331 (368)
+.+++....+..++.. |..+..-| .|.+++.++++++..-|-+..+= ..-..++ +.+
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW----~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIW----NYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHH----HHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHH----HHHHHHHHHHHHhccc
Confidence 4455555555555443 77788888 99999999999988766554221 0111222 444
Q ss_pred -CChHHHHHHHHHHh-cCC
Q 017641 332 -HRPKEARIMYEKLQ-SHP 348 (368)
Q Consensus 332 -GR~~EAiaLYkkL~-sHP 348 (368)
++.++++.+|.++. .||
T Consensus 123 ~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 77888888888874 566
No 214
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=68.17 E-value=13 Score=31.28 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc-----cCccchHHHHHHHHHHHHhcCC
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQDSLHR 333 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAydA~GR 333 (368)
.+.+-..+..++.+|++|++.+.-.++-+|.+.+. .+-+-||++.-.|.--|+-+.|
T Consensus 33 ydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~ 94 (131)
T 3iqc_A 33 YEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIK 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999999987653 3445689999999988886543
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=68.01 E-value=10 Score=39.20 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=45.6
Q ss_pred HHHHHhcCchhhhh-HHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 287 GDSLMDSGKLKEAL-PFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 287 Gk~AmerGkYr~AV-~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
++-....|...+|+ ..|+.|+..+|.. -.+-+.+|..++..|+.+.|..+|+++..
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55566788899998 9999999988753 13344578889999999999999999974
No 216
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.67 E-value=9.7 Score=32.49 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (368)
++|-.++. -..+|+||+|.+|+.+++... --.+.-|+|.|-=.+|-...+-.---.|.+.-.+++-.=|.
T Consensus 39 ~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~c---------~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa~ 108 (116)
T 2p58_C 39 EEAVQLIR-LSSLMNRGDYASALQQGNKLA---------YPDLEPWLALCEYRLGLGSALESRLNRLARSQDPRIQTFVN 108 (116)
T ss_dssp HHHHHHHH-HHHHHHTTCHHHHHHHHTTSC---------CGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHH-HHHHHcchhHHHHHHhcCCCC---------CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44544444 568999999999999887632 23456799999999999888887777888888887766665
Q ss_pred HHh
Q 017641 358 QFM 360 (368)
Q Consensus 358 rLl 360 (368)
-|+
T Consensus 109 g~r 111 (116)
T 2p58_C 109 GMR 111 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 217
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=65.83 E-value=8.5 Score=32.54 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=52.8
Q ss_pred HHHHhhcCCcCChh-----hHHHHHHHHHHHHHHHhcCch-hhh---hHHHHHHHhhc-----ccCccchHHHHHHHHHH
Q 017641 262 AAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKL-KEA---LPFYEKVMNKM-----VFKSELHGLAALQWSIC 327 (368)
Q Consensus 262 aaYrk~~Gl~Vd~~-----~~~e~eea~~~Gk~AmerGkY-r~A---V~~lEkA~~~v-----~~~S~LGGeaqLwLAiA 327 (368)
++|++..=.+-+|. +.+.+-..+..++.+|++|++ .+. -.++-+|.+.+ ..+-+-||++.-.|.--
T Consensus 6 ~~Y~~~~v~tAsP~~Li~mLydgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~L 85 (130)
T 1orj_A 6 EAYFQNMVETATPLEQIILLYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTI 85 (130)
T ss_dssp GGTSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHH
T ss_pred HHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHH
Confidence 45665432233444 247788999999999999999 888 88888887766 44556789999999988
Q ss_pred HHhcC
Q 017641 328 QDSLH 332 (368)
Q Consensus 328 ydA~G 332 (368)
|+-+.
T Consensus 86 Y~y~~ 90 (130)
T 1orj_A 86 YTIIL 90 (130)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 218
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=65.19 E-value=20 Score=33.17 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhcCchh-hhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcC--ChHHHHHHHHHHh-cCCCH
Q 017641 278 SECEKALKDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH--RPKEARIMYEKLQ-SHPNA 350 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr-~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G--R~~EAiaLYkkL~-sHP~~ 350 (368)
++..+++..-...+..|.|. +|+..+++|+.+-|-... +=..-..++.++| +.++|+.+|.++. .||.-
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~ 102 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN 102 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc
Confidence 44556777777788889885 899999999998876642 3344677899999 9999999999985 67753
No 219
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=65.17 E-value=23 Score=37.07 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=60.7
Q ss_pred HHHHHHHHhhc--CCcCChhhHHHHHHHHHHHHHH--HhcCchhhhhHHHHHHHhhcccC------------ccchHHHH
Q 017641 258 RQLLAAYKKSV--GLNVDPKLKSECEKALKDGDSL--MDSGKLKEALPFYEKVMNKMVFK------------SELHGLAA 321 (368)
Q Consensus 258 ke~LaaYrk~~--Gl~Vd~~~~~e~eea~~~Gk~A--merGkYr~AV~~lEkA~~~v~~~------------S~LGGeaq 321 (368)
++.+..|+..- -..|+++..+.|...++..... +..|+|.+|++.+++ +..+|.. ..|+.+|+
T Consensus 512 ~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~d~~~i~~~a~~f~~l~~~V~ 590 (661)
T 2qx5_A 512 RRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFSDELSARKKAQDFSNLDDNIV 590 (661)
T ss_dssp HHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-----CHHHHHHGGGSCHHHH
T ss_pred HHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCCCchHHHHHHHHHhccCHHHH
Confidence 34455565432 2267888889999888876655 999999999999998 6677766 23444443
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHhcCCC---------HHHHHHHHHHh
Q 017641 322 -------LQWSICQDSLHRPKEARIMYEKLQSHPN---------ALVSKRARQFM 360 (368)
Q Consensus 322 -------LwLAiAydA~GR~~EAiaLYkkL~sHP~---------~eVrKQAkrLl 360 (368)
+|--.|+. .+|++|+.... .++|+||+.|+
T Consensus 591 ~~lP~lLl~aM~~l~---------~~~~~l~~~~~~~~~~~~~~~~lr~~ak~l~ 636 (661)
T 2qx5_A 591 KNIPNLLIITLSCIS---------NMIHILNESKYQSSTKGQQIDSLKNVARQCM 636 (661)
T ss_dssp TTHHHHHHHHHHHHH---------HHHHHHHSTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 33333332 36778874432 36788888874
No 220
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.50 E-value=9.5 Score=32.50 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (368)
++|-.++. -..+|+||+|.+|+.+++... --.+.-|+|.|-=.+|-...+-.---.|.+.-.+++-.=|.
T Consensus 38 ~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~c---------~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa~ 107 (115)
T 2uwj_G 38 DEAARLIR-ISSLANQGRYQEALAFAHGNP---------WPALEPWFALCEWHLGLGAALDRRLAGLGGSSDPALADFAA 107 (115)
T ss_dssp HHHHHHHH-HHHHHHTTCHHHHHGGGTTCC---------CGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHH-HHHHHcchhHHHHHHhcCCCC---------CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44544444 568999999999999877532 23456789999889998888877777788888887766665
Q ss_pred HHh
Q 017641 358 QFM 360 (368)
Q Consensus 358 rLl 360 (368)
-|+
T Consensus 108 g~r 110 (115)
T 2uwj_G 108 GMR 110 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=64.32 E-value=21 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 316 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L 316 (368)
.+..|..++..|+|..|+.+|++|+.+-|.....
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3677999999999999999999999988877544
No 222
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=62.59 E-value=54 Score=32.60 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHH-----------HHHHHhcCc----------hhhhhHHHHHHHhhcccC
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKD-----------GDSLMDSGK----------LKEALPFYEKVMNKMVFK 313 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~-----------Gk~AmerGk----------Yr~AV~~lEkA~~~v~~~ 313 (368)
+..+..+.+.++. -+.+.+..+-+..++.. |..+..-|+ |.+++.+|++|+..-+-+
T Consensus 29 ~~~~~~~~~~~~~--~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 29 QSATQAVFQKRQA--GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HHHHHHHHHHHHT--TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 3334444444433 35566656666555543 666666677 999999999998765544
Q ss_pred ccchHHHHHH--HHHHHHhcC--ChHHHHHHHHHHh-cCCC
Q 017641 314 SELHGLAALQ--WSICQDSLH--RPKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 314 S~LGGeaqLw--LAiAydA~G--R~~EAiaLYkkL~-sHP~ 349 (368)
. +.| -..+++.+| +.++|++.|.++. .||.
T Consensus 107 y------~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 107 Y------GTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp H------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred H------HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 2 334 456778888 5599999998884 5664
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.33 E-value=7.2 Score=37.74 Aligned_cols=61 Identities=16% Similarity=-0.002 Sum_probs=39.2
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhh-----ccc----C---ccchHHHHHH------HHHHHHhcCChHHHHHHHHHHhc
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNK-----MVF----K---SELHGLAALQ------WSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~-----v~~----~---S~LGGeaqLw------LAiAydA~GR~~EAiaLYkkL~s 346 (368)
+.|+.|+..|++..|...|.++-+. +-. . .++ +.+.+. -..||-.+|+.++|+.||.++.+
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~-~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTL-AKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHH-HHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4599999999999999999986221 100 0 011 111111 23466668999999999988753
No 224
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.96 E-value=11 Score=29.46 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccc
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 316 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L 316 (368)
.-+-+..+.|..++.+|.+.+|+.+|-+|+.-++....|
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 446678899999999999999999999999888877655
No 225
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=57.68 E-value=10 Score=29.95 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Q 017641 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKV 306 (368)
Q Consensus 274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA 306 (368)
.....++++-|+.++.+++.|.|+.|+-....|
T Consensus 6 ~~~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a 38 (126)
T 2hsb_A 6 ELRIRKAEKLVQDAKKEFEMGLYERCCSTAYYA 38 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 336788999999999999999999775544443
No 226
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=56.37 E-value=16 Score=31.35 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=45.4
Q ss_pred HHHHHHhhcCCcCChhh-----HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc-Ccc--chHHHHHHHHHHHHhc
Q 017641 260 LLAAYKKSVGLNVDPKL-----KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSE--LHGLAALQWSICQDSL 331 (368)
Q Consensus 260 ~LaaYrk~~Gl~Vd~~~-----~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~-~S~--LGGeaqLwLAiAydA~ 331 (368)
..++|++..=.+-+|.. .+.|-..+..++.+|++|++.++-.++-+|.+.+.- .+- +-|++.-.|.--|+-+
T Consensus 8 ~~~aY~~~~v~tAsP~~Li~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~egeiA~nL~~LY~y~ 87 (145)
T 1vh6_A 8 PYTAYQQNSVNTATPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRNIELSASMGAMYDYM 87 (145)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 35678775433446653 478889999999999999999999999999887721 111 1177777777777654
Q ss_pred CC
Q 017641 332 HR 333 (368)
Q Consensus 332 GR 333 (368)
.|
T Consensus 88 ~~ 89 (145)
T 1vh6_A 88 YR 89 (145)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 227
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=54.20 E-value=5.7 Score=39.57 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=44.5
Q ss_pred HHHHHHHhcCchh-hhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCC----------hHHHHHHHHHHh-cCCC
Q 017641 285 KDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR----------PKEARIMYEKLQ-SHPN 349 (368)
Q Consensus 285 ~~Gk~AmerGkYr-~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR----------~~EAiaLYkkL~-sHP~ 349 (368)
..-...+..|.|. +|+..+++|+..-|-... |-..-..|+..+|+ .++|+..|.++. .||.
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t----aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK 105 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 105 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 3334456667775 669999999988776532 23335678888999 899999999985 6774
No 228
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.64 E-value=13 Score=30.53 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=36.4
Q ss_pred Chhh-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccch
Q 017641 273 DPKL-KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 317 (368)
Q Consensus 273 d~~~-~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG 317 (368)
|++. +.-+-+..+.|..++.+|.+..|+.||-+|+..++....|=
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4443 34467888999999999999999999999998888776554
No 229
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=49.61 E-value=28 Score=26.81 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCChhhHHHHHH
Q 017641 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEK 282 (368)
Q Consensus 246 teEEkaar~~rtke~LaaYrk~~Gl~Vd~~~~~e~ee 282 (368)
|+||+..|.+.++..|+.-| =-||++|+...+.++.
T Consensus 3 tEeE~~~Rr~avq~Aian~R-LEGLEpd~~~l~~~er 38 (61)
T 3shg_B 3 SEEEIEYRRRDARNALASQR-LEGLEPDPQVVAQMER 38 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTTCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhh-hccCCCCHHHHHHHHH
Confidence 89999999999999999887 4699999999887664
No 230
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.99 E-value=26 Score=26.81 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
....+...+..+..+=..|.|.+|+.+|..|++.+
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45555666666667777788888888888877654
No 231
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=47.39 E-value=29 Score=28.32 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=21.6
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHhhhhhcc
Q 017641 338 RIMYEKLQSH-PNALVSKRARQFMFSFQVY 366 (368)
Q Consensus 338 iaLYkkL~sH-P~~eVrKQAkrLlyiLEAm 366 (368)
+.+. +|++| ++.+|++.|+.|+-.+..+
T Consensus 57 k~Vn-~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 57 VAVN-GVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHH-HHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHccCCcHHHHHHHHHHHHHHHHH
Confidence 3443 47665 9999999999999877654
No 232
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=45.61 E-value=27 Score=27.25 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
...+-+.++.+..+=..|+|.+|+.+|..+++.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444445555566666667777777777666543
No 233
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=44.50 E-value=22 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (368)
.+..+...+..+..+=..|.|.+|+.+|..|++++-
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 455666666677777778999999999998877643
No 234
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=44.43 E-value=25 Score=27.53 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
+.+.+..+..+=..|+|.+|+.+|..|++.+
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445666677778899999999988887654
No 235
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=44.36 E-value=68 Score=26.44 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHH
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVM 307 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~ 307 (368)
+.|...|..= ..+|-+-.......++..|...+.+|..++|..|--+.|+|.
T Consensus 10 ~~te~Ai~~A-~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 10 RLTEQALEQA-KAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHHHH-HHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3455555553 344544444468899999999999999999999999999963
No 236
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.65 E-value=29 Score=26.81 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhh
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (368)
..+-+.++.+...=..|+|.+|+.+|..+++.
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34444555556666677777777777766554
No 237
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.13 E-value=20 Score=27.82 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 017641 322 LQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk 343 (368)
+..|+-+|..|+.++|+.+|++
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 3446778999999999999975
No 238
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=42.58 E-value=26 Score=27.35 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 017641 322 LQWSICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk 343 (368)
+..|+-+|..|+.+||+.+|++
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 3446778999999999999975
No 239
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=41.30 E-value=17 Score=37.36 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHH
Q 017641 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (368)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (368)
+..++.++.+++.|+|+-|.+.+..++..=+-+. ++.--+|-||+.+|...|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 4677889999999999999999999887766554 577778889988886544
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=40.36 E-value=77 Score=30.98 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=48.3
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhcccC--ccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFK--SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
+.|..++++|+|.+|+..+.+..+.|..- ..+==|+.+--.-.|-+.+....|.++|.+-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77999999999999999999998887541 22334555555666778999999999998874
No 241
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=40.24 E-value=43 Score=26.39 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 274 ~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
......+-+.+..+..+=..|.|.+|+.+|..|++.+
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3345556666667777777788888888888877654
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=40.03 E-value=15 Score=32.78 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=49.7
Q ss_pred cCChhhHHHHHHHHHH----HHHHHhcCchhhhhHHHHHHHhhcccCccch--HHHHHH--HHHHHHhcCChHHHHHHHH
Q 017641 271 NVDPKLKSECEKALKD----GDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQ--WSICQDSLHRPKEARIMYE 342 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~----Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLw--LAiAydA~GR~~EAiaLYk 342 (368)
.|+|...+.|-.-+.. |.-..+ +-+..-++.||.|...+++..... -=|.|| +|. +..++..++|+.+|+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQ 84 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHH
Confidence 5566666555544333 333233 334677789999999999874222 224444 675 577899999999999
Q ss_pred HHhcCCCHHH
Q 017641 343 KLQSHPNALV 352 (368)
Q Consensus 343 kL~sHP~~eV 352 (368)
.+.++ |...
T Consensus 85 ~a~~~-hKkF 93 (161)
T 4h7y_A 85 MARAN-CKKF 93 (161)
T ss_dssp HHHHH-CTTB
T ss_pred HHHHH-hHHH
Confidence 99766 5544
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.99 E-value=1.2e+02 Score=29.10 Aligned_cols=90 Identities=8% Similarity=0.005 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHH--HHHhcCC
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI--CQDSLHR 333 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAi--AydA~GR 333 (368)
+..+.+..+.++...++. ..+..++.|+-+++.|+|..|+..|..+.+.+... +-.+.++|.+ ++=..+.
T Consensus 112 ~l~~~~~~~~~~~~~e~e-----~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~d 183 (429)
T 4b4t_R 112 ELNEKIQKLEEDDEGELE-----QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYND 183 (429)
T ss_dssp HHHHHHHHHHHCCSCCCC-----CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhcc
Confidence 444555555553322221 12235678999999999999999999999988654 3334444332 3334688
Q ss_pred hHHHHHHHHHHh----cCCCHHHH
Q 017641 334 PKEARIMYEKLQ----SHPNALVS 353 (368)
Q Consensus 334 ~~EAiaLYkkL~----sHP~~eVr 353 (368)
...|...++++. ..++++++
T Consensus 184 ~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 184 QLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHH
Confidence 889999998874 34455444
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.65 E-value=56 Score=31.66 Aligned_cols=73 Identities=12% Similarity=0.002 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhH---HHHHHHHHH-HHHHHhcCchhhhhHHHHH-HHhhccc-CccchHHHHHHHHH
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLK---SECEKALKD-GDSLMDSGKLKEALPFYEK-VMNKMVF-KSELHGLAALQWSI 326 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~---~e~eea~~~-Gk~AmerGkYr~AV~~lEk-A~~~v~~-~S~LGGeaqLwLAi 326 (368)
+..||-++|.+- |+.... -|+.+.|+. .-+++.+++|.+|++.|-. |..++.. +...|++..+.++-
T Consensus 11 ~~~~~i~rl~~~-------I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llve 83 (336)
T 3lpz_A 11 KIERIIARLQRR-------IAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVD 83 (336)
T ss_dssp HHHHHHHHHHHH-------HHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHH
Confidence 344555555543 233345 666666665 7789999999999998877 4554444 35788999999999
Q ss_pred HHHhcC
Q 017641 327 CQDSLH 332 (368)
Q Consensus 327 AydA~G 332 (368)
+|+..+
T Consensus 84 vy~~~~ 89 (336)
T 3lpz_A 84 TFRQAG 89 (336)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 998876
No 245
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=37.47 E-value=31 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC
Q 017641 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 313 (368)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~ 313 (368)
.++-+.++.|+..---|.|..|+.+|+.|++.+..-
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 446678899999999999999999999998877653
No 246
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=36.50 E-value=1.7e+02 Score=27.79 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHH--------------hcCch-----------------hhhhHHHH
Q 017641 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM--------------DSGKL-----------------KEALPFYE 304 (368)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Am--------------erGkY-----------------r~AV~~lE 304 (368)
...+++..||+++ ..++...|...++.=+..+ =.|+| ..|...|+
T Consensus 101 ~~~~~i~~yr~ki----e~EL~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq 176 (268)
T 3efz_A 101 EFIQVIEDIKRDF----EESILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYE 176 (268)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 3456788888765 4556777777765532221 01333 46778888
Q ss_pred HHHhh----c--ccCc-cchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 017641 305 KVMNK----M--VFKS-ELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (368)
Q Consensus 305 kA~~~----v--~~~S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (368)
.|++. + ++.. ..=|.+-=+=+--||-++..++|+.|.++-
T Consensus 177 ~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~A 223 (268)
T 3efz_A 177 DALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRA 223 (268)
T ss_dssp HHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88653 3 3322 222555444456688999999999998874
No 247
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=36.08 E-value=1.3e+02 Score=28.80 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=49.1
Q ss_pred cCChhhHHHHHHHHHH-----------HHHHHhcC-chhhhhHHHHHHHhhcccCccchHHHHHH--HHHHHHhc-C-Ch
Q 017641 271 NVDPKLKSECEKALKD-----------GDSLMDSG-KLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSL-H-RP 334 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~-----------Gk~AmerG-kYr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~-G-R~ 334 (368)
+.+++.++.++.++.. |..+..-| .|.+++.++++++..-+-+ .++| -..|++.+ + +.
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------y~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------YQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhcCCCh
Confidence 3455556666655544 66777777 4889999998888655543 2344 44566666 7 88
Q ss_pred HHHHHHHHHHh-cCCC
Q 017641 335 KEARIMYEKLQ-SHPN 349 (368)
Q Consensus 335 ~EAiaLYkkL~-sHP~ 349 (368)
++++++|.++. .||.
T Consensus 142 ~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHHHHHTSSCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 89999998885 5664
No 248
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=36.06 E-value=42 Score=26.57 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (368)
...+++.-|+.++.+++.|.|..|.=+.++|+++.
T Consensus 7 wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~ 41 (122)
T 1wol_A 7 WIKQAERDLEEARYAKSGGYYELACFLSQQCAEKA 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 46788889999999999999998877766655443
No 249
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=35.87 E-value=33 Score=25.20 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcCChh
Q 017641 248 EARAAKEERTRQLLAAYKKSVGLNVDPK 275 (368)
Q Consensus 248 EEkaar~~rtke~LaaYrk~~Gl~Vd~~ 275 (368)
+|+-+=++++++.|...|.-.|+.++|+
T Consensus 22 eEW~awRa~~~~~L~eer~~~~~~~~~~ 49 (50)
T 3zwl_E 22 KQWTEYREKIGQEMEKSMNFKIFDVQPE 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4666677888999999999999999986
No 250
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=35.19 E-value=2.4e+02 Score=27.11 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=56.9
Q ss_pred cCChhhHH-HHHHHHHHHHHHHh-----cCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 017641 271 NVDPKLKS-ECEKALKDGDSLMD-----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS-LHRPKEARIMYEK 343 (368)
Q Consensus 271 ~Vd~~~~~-e~eea~~~Gk~Ame-----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA-~GR~~EAiaLYkk 343 (368)
++||.-.. .+. .-.|..++. -|....|..+||+|+++-+.+. + .+...++--|-- .|+.++|..+.++
T Consensus 191 eLDP~~~~GsA~--~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-i--d~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 191 DLWPSYQEGAVW--NVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-P--DHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHCTTHHHHHHH--HHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-S--HHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HhCCCcccCHHH--HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-c--hHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 56666432 222 123555555 4999999999999999877432 2 345556665544 5999999999998
Q ss_pred Hhc---C--CCHH-----HHHHHHHHhh
Q 017641 344 LQS---H--PNAL-----VSKRARQFMF 361 (368)
Q Consensus 344 L~s---H--P~~e-----VrKQAkrLly 361 (368)
-.. | |... -+++|+.||=
T Consensus 266 AL~a~p~~~P~~~lan~~~q~eA~~LL~ 293 (301)
T 3u64_A 266 ALAIDPESVPHNKLLVILSQKRARWLKA 293 (301)
T ss_dssp HHHCCGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 753 3 5555 5677887763
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=34.78 E-value=1.4e+02 Score=25.08 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCchh---hhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLK---EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQ 358 (368)
Q Consensus 283 a~~~Gk~AmerGkYr---~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkr 358 (368)
.|.-+-.+.....-. .+|.+||..+..-.+ ..-=+.-..||++|=.+|+.++|+..|+.| +.+|+- .||..
T Consensus 38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~QA~~ 112 (126)
T 1nzn_A 38 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQAKE 112 (126)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HHHHH
Confidence 455555666555444 499999997775311 133477889999999999999999999999 578864 46666
Q ss_pred Hhhhh
Q 017641 359 FMFSF 363 (368)
Q Consensus 359 LlyiL 363 (368)
|..-+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65433
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=34.43 E-value=74 Score=30.25 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhcCCcCChhhHHHHHHHHHH-HHHHHhcCchhhhhHHHHHH-Hhhcc-cCccchHHHHHHHHHHHH
Q 017641 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKD-GDSLMDSGKLKEALPFYEKV-MNKMV-FKSELHGLAALQWSICQD 329 (368)
Q Consensus 253 r~~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~-Gk~AmerGkYr~AV~~lEkA-~~~v~-~~S~LGGeaqLwLAiAyd 329 (368)
+-.||.++|.+- |+....-|+.+.|+. .-+++.+++|.+|++.|... ..++. .+...|++..+.++-+|+
T Consensus 12 ~~~r~l~rl~~~-------I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~ 84 (312)
T 2wpv_A 12 KLAKTLQRFENK-------IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYD 84 (312)
T ss_dssp CHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 445555555543 233455677777765 78889999999999997774 44333 344678888889999998
Q ss_pred hcCCh
Q 017641 330 SLHRP 334 (368)
Q Consensus 330 A~GR~ 334 (368)
..+-.
T Consensus 85 ~~~~~ 89 (312)
T 2wpv_A 85 LAEVK 89 (312)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 87653
No 253
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=34.31 E-value=60 Score=29.24 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHH
Q 017641 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351 (368)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~e 351 (368)
+..+|+- +.|+++...+-++....++.-+-+|.||..+|...+|..|-++-...-.++
T Consensus 101 lv~~~Kk----DqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 101 LVIQGKR----DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHTTCH----HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccH----hHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 4445553 457888888777999999999999999999999999999987765444443
No 254
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=33.59 E-value=42 Score=26.52 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc--------ccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM--------VFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 276 ~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v--------~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
...+++.-|+.++.+++.|.|..|+=+.++|+++. ....+-|....| +..+.+..+-..+-+..+..|.
T Consensus 7 w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~lKalL~~~g~~p~tH~l~~L-~~~~~~~~~~~~~~~~~~~~L~ 83 (127)
T 1ufb_A 7 WLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAALKGLHLARGQVAWGHSILDL-LADLPEDVDVPEDLVEAAKVLD 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCHHHH-HHTSCTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHH-HHHHHhccCCCHHHHHHHHHHH
Confidence 46788889999999999999998776666654433 333455653332 3333333454556666666674
No 255
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=33.34 E-value=49 Score=22.79 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCC
Q 017641 322 LQWSICQDSLHRPKEARIMYEKLQSHP 348 (368)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkkL~sHP 348 (368)
.||+--|-++|.++||-++=++++...
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~q~k~~q 32 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEKTLKNKQ 32 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 478889999999999999988887543
No 256
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=32.59 E-value=47 Score=27.13 Aligned_cols=68 Identities=10% Similarity=-0.008 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc--------ccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM--------VFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v--------~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (368)
..+++.-|+.++.+++.|.|..|.=+.++|+++. ....+-|....|- ..+-+..+-..+-+..+..|.
T Consensus 13 ~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~EkalKAlL~~~~~~pktH~l~~L~-~~l~~~~~~~~e~~~~~~~L~ 88 (135)
T 1o3u_A 13 MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQRMGAQAWGYSVPDFL-GELSSRFEIPEELMDHALELD 88 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHH-HHHTTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHH-HHHHHhcCCCHHHHHHHHHHH
Confidence 4678889999999999999988776666655443 2335556644432 222233455556677777774
No 257
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.31 E-value=75 Score=26.40 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=22.6
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhccc
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (368)
..+.+++..|+|.+|++..++|++.+.-
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4578889999999999988888766543
No 258
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=30.26 E-value=1.2e+02 Score=29.37 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=36.3
Q ss_pred HHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC--CHH-HHHHHHHHhh
Q 017641 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP--NAL-VSKRARQFMF 361 (368)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP--~~e-VrKQAkrLly 361 (368)
++.++.+|++..|..+|.+ -|.+.--.- +|..++|.++|+.|.+++..+- .+. +++-+.+|.+
T Consensus 730 ~~~a~~~~~~~~A~~~~~~-----------~g~~~~a~~-~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~ 795 (814)
T 3mkq_A 730 AKDAETTGKFNLAFNAYWI-----------AGDIQGAKD-LLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLIL 795 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----------HTCHHHHHH-HHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCchHHHHHHHHH-----------cCCHHHHHH-HHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 4555556666655555443 233333333 4889999999999999743222 123 3444556654
No 259
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=30.13 E-value=54 Score=25.63 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH--------hcCCCHHHHHH
Q 017641 321 ALQWSICQDSLHRPKEARIMYEKL--------QSHPNALVSKR 355 (368)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL--------~sHP~~eVrKQ 355 (368)
.+.-|+-+|..|+.++|+.+|..- +.-|++..+..
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~ 61 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 61 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 445677789999999999999752 35677765443
No 260
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.98 E-value=66 Score=31.21 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=34.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC
Q 017641 272 VDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 313 (368)
Q Consensus 272 Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~ 313 (368)
+-+.......+.++.|-.+|..|++.+|+..|..++-.+++-
T Consensus 94 ~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~ 135 (320)
T 3mkr_B 94 AVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLL 135 (320)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGC
T ss_pred CcccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhe
Confidence 334445566668999999999999999999999998888654
No 261
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=28.92 E-value=70 Score=30.80 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=45.7
Q ss_pred chhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhc-----CChHHHHHHHHHH-hcCCCH
Q 017641 295 KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-----HRPKEARIMYEKL-QSHPNA 350 (368)
Q Consensus 295 kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-----GR~~EAiaLYkkL-~sHP~~ 350 (368)
...+|+..+|+|+++=+ +-+.|.+...|.+.|..+ |..+.|..+|++- .-+|+.
T Consensus 178 ~l~~A~a~lerAleLDP--~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 178 TVHAAVMMLERACDLWP--SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHHHHhCC--CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 45788889999988765 456899999999999997 9999999999987 468864
No 262
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=28.90 E-value=1.2e+02 Score=28.25 Aligned_cols=71 Identities=13% Similarity=-0.013 Sum_probs=43.2
Q ss_pred HHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 017641 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM 360 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLl 360 (368)
.|..-|++|.+++=+..+++-+..+. -|=.-..+.|..+=+....++.+.|...|-.|+.-+||--|-.|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lL 95 (240)
T 3l9t_A 25 TGGQQMGRGSMKQYVARLEKDFSLIE----HGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLF 95 (240)
T ss_dssp ---------CHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 46777899998888888887655442 232344556666666666888999999999999999988877654
No 263
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=28.41 E-value=2e+02 Score=22.02 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 017641 297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM 360 (368)
Q Consensus 297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLl 360 (368)
..+++.|..++.-- .-.|..+-+.++-.+|. .+++....++-.+++..||..|.+-|
T Consensus 72 ~~a~~~L~~~L~d~------~~~VR~~A~~aL~~~~~-~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ERAVEPLIKLLEDD------SGFVRSGAARSLEQIGG-ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHHC------CTHHHHHHHHHHHHHCS-HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCc-HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56788888877521 24677777888888885 56777777777899999999997655
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.95 E-value=2.6e+02 Score=27.97 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH--hcCCCHHHHHHH
Q 017641 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL--QSHPNALVSKRA 356 (368)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL--~sHP~~eVrKQA 356 (368)
.+-.|+.+-=++.+..|..+|++|.++.|.. |...-|||+.+-..|+.=+|+-.|-+- ..+|.+.-+..-
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~----G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN----GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB----SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCC----CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 4567888888888999999999999999875 788999999999999888888776554 368877655443
No 265
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=27.50 E-value=37 Score=30.12 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=37.6
Q ss_pred HHHHHHHhcCchhhhhHHHHHHHhhccc------------------CccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 017641 285 KDGDSLMDSGKLKEALPFYEKVMNKMVF------------------KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~------------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (368)
+.|+.|+..|++.-|...|.++-+.-.. -....|...+-. +|+=-+|+.++|+.||.+.-+
T Consensus 39 ~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af-~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 39 RLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSML-LNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHH-HHHHHcCCHHHHHHHHHHCCC
Confidence 3599999999999999988886322111 111112222222 233346888888888876654
Q ss_pred CC
Q 017641 347 HP 348 (368)
Q Consensus 347 HP 348 (368)
.|
T Consensus 118 ~~ 119 (177)
T 3mkq_B 118 LP 119 (177)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 266
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=26.79 E-value=2.6e+02 Score=24.29 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHHhcCCh----HH----HHHHHHHHhcCCCHHHHHHHHHHhh
Q 017641 315 ELHGLAALQWSICQDSLHRP----KE----ARIMYEKLQSHPNALVSKRARQFMF 361 (368)
Q Consensus 315 ~LGGeaqLwLAiAydA~GR~----~E----AiaLYkkL~sHP~~eVrKQAkrLly 361 (368)
.+=-++..||..|+...|-. .. .+....+|-.|++++||..|..++-
T Consensus 154 kv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 154 KLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 45567788999999887642 22 2334455668999999999999863
No 267
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=32.34 E-value=14 Score=38.48 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHH
Q 017641 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (368)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (368)
.+..++.++.+|+.|+|+-|.+++..++..=+-+. ++.--+|-||+.+|...|.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~----~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANK----DARALQADAMEQLGYQTEN 514 (668)
Confidence 35678889999999999999999998877655554 5677788999999987664
No 268
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.30 E-value=68 Score=31.26 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=34.6
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC
Q 017641 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 313 (368)
Q Consensus 271 ~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~ 313 (368)
.+-+ ......+.++.|-++|..|++.+|+..|..++-.+++-
T Consensus 106 P~i~-~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~ 147 (325)
T 3mv2_A 106 PYVP-GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLL 147 (325)
T ss_dssp BCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred CCCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhee
Confidence 3445 56666678999999999999999999999998877654
No 269
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.20 E-value=71 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=22.2
Q ss_pred HHHHHHhcCChHHHHHHHHHH--------hcCCCHHHHH
Q 017641 324 WSICQDSLHRPKEARIMYEKL--------QSHPNALVSK 354 (368)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL--------~sHP~~eVrK 354 (368)
.|+-.|..|+.++|+.+|..= +.-|++..+.
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~ 57 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKD 57 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355679999999999999753 2346666554
No 270
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.16 E-value=69 Score=25.20 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=22.9
Q ss_pred HHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHH
Q 017641 323 QWSICQDSLHRPKEARIMYEK--------LQSHPNALVSK 354 (368)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrK 354 (368)
..|+-+|..|+.++|+.+|+. |+.-|++..+.
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~ 59 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRC 59 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 346778999999999999975 23446666543
No 271
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=25.59 E-value=3.2e+02 Score=24.06 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCCh-hhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC-----ccchHH
Q 017641 246 TAEARAAKEERTRQLLAAYKKSVGLNVDP-KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-----SELHGL 319 (368)
Q Consensus 246 teEEkaar~~rtke~LaaYrk~~Gl~Vd~-~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-----S~LGGe 319 (368)
+++++..=-+...+.|...-+..|+.+++ +..+..- ..-.|..++|+..++.+...-... ..++.+
T Consensus 166 ~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~--------~~~~gd~R~a~~~L~~~~~~~~i~~~~v~~~~~~~ 237 (324)
T 3u61_B 166 TDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALV--------KKNFPDFRKTIGELDSYSSKGVLDAGILSLVTNDR 237 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHH--------HHTCSCTTHHHHHHHHHGGGTCBCC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH--------HhCCCCHHHHHHHHHHHhccCCCCHHHHHHHhCCH
Confidence 34444332333344444444566888887 6544322 225699999999999986210000 001110
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHH
Q 017641 320 AALQWSICQDSLHRPKEARIMYEKLQSHPNALVS 353 (368)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVr 353 (368)
-.+.-.+-.-..++.++|+.++..|...|..=++
T Consensus 238 ~~i~~~~~~~~~~~~~~a~~~~~~l~~~~~~i~~ 271 (324)
T 3u61_B 238 GAIDDVLESLKNKDVKQLRALAPKYAADYSWFVG 271 (324)
T ss_dssp --CHHHHHHHHTTCHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCHHHHHH
Confidence 0111111112356788898888888764433333
No 272
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=25.10 E-value=1.2e+02 Score=29.15 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=34.9
Q ss_pred ccccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCChh
Q 017641 215 KVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK 275 (368)
Q Consensus 215 kVsTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaar~~rtke~LaaYrk~~Gl~Vd~~ 275 (368)
..+|=|-||||..|-++ |.-...+.+..+|=++.-++.+++.++.- +..||+|-..
T Consensus 19 ptt~vGSfprp~~l~~a----r~~~~~g~i~~~~l~~~~~~ai~~~V~~Q-~~~Gldvvtd 74 (357)
T 3rpd_A 19 PTSTAGSLPKPLWLAEP----ETLWSPWKLQGEELITGKHDALRLSLQDQ-QLAGIDIVSD 74 (357)
T ss_dssp CCCCSSCCCCCTTTBCT----TCSSCCBSCCHHHHHHHHHHHHHHHHHHH-HHTTCSSBCC
T ss_pred ccceeccCCCCHHHHHH----HHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHcCCCcccC
Confidence 46789999999988876 22222234544444455556666666554 5688887543
No 273
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.03 E-value=4.8e+02 Score=25.32 Aligned_cols=78 Identities=5% Similarity=-0.011 Sum_probs=49.8
Q ss_pred hcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHh-
Q 017641 267 SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ- 345 (368)
Q Consensus 267 ~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~- 345 (368)
+.|+..|..+....- ..+...|++.+|...|+...+. .-..--.+---|.-+|-..|+.++|..++++++
T Consensus 133 ~~g~~Pd~~tyn~lI------~~~~~~g~~~~A~~l~~~M~~~---G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 133 AFGIQPRLRSYGPAL------FGFCRKGDADKAYEVDAHMVES---EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HTTCCCCHHHHHHHH------HHHHHTTCHHHHHHHHHHHHHT---TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCCccceehHHH------HHHHHCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 445555544433322 2244678899999988886543 112223344446678888999999999999986
Q ss_pred --cCCCHHHH
Q 017641 346 --SHPNALVS 353 (368)
Q Consensus 346 --sHP~~eVr 353 (368)
..|+..+-
T Consensus 204 ~g~~ps~~T~ 213 (501)
T 4g26_A 204 LVRQVSKSTF 213 (501)
T ss_dssp HTSSBCHHHH
T ss_pred hCCCcCHHHH
Confidence 57777664
No 274
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=23.32 E-value=82 Score=30.96 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcc
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (368)
+.++.++.++|..++++|++..|..+|+.|.++.-
T Consensus 379 ~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~~~~ 413 (464)
T 4fx5_A 379 QAEMAAAIQEGLDAQAAGDLDTATARLGRAMDLAV 413 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999877653
No 275
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.01 E-value=3.1e+02 Score=23.71 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=48.0
Q ss_pred CchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhhh
Q 017641 294 GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFS 362 (368)
Q Consensus 294 GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyi 362 (368)
...+.+|.+||.....-+. ---+--..||++|=.+|+.++|+..|+.| +..|+- .||+.|...
T Consensus 56 ~di~~GI~LLe~l~~~~~~---~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~QA~~Lk~~ 119 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCS---THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcc---chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Confidence 3456899999998774332 24567889999999999999999999999 578864 456665543
No 276
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=22.80 E-value=4.1e+02 Score=27.34 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=36.2
Q ss_pred CchhhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CC
Q 017641 294 GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HP 348 (368)
Q Consensus 294 GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP 348 (368)
+++..|...||.+++.++-... .-+.++.-..+.|+.+.|+++|++... .|
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~----~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGE----YINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHHHCCCchH----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 3488999999999998665422 223345545678899999999998864 45
No 277
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=21.91 E-value=2.7e+02 Score=26.27 Aligned_cols=92 Identities=15% Similarity=0.023 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhc----------CchhhhhHHHHHHHhhcccCccchHHHHHHH
Q 017641 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS----------GKLKEALPFYEKVMNKMVFKSELHGLAALQW 324 (368)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~Amer----------GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL 324 (368)
.+..+.|.-+.+.. .++|...+-+- |-.|-..-.. +.|+++++++.++++.-|-+ ..-....+.+
T Consensus 207 ~~~~eEle~~~~ai--~~~P~d~SaW~--Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~ 281 (331)
T 3dss_A 207 NVLLKELELVQNAF--FTDPNDQSAWF--YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILL 281 (331)
T ss_dssp HHHHHHHHHHHHHH--HHSTTCHHHHH--HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCCCHHHHH--HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHH
Confidence 34556666665443 67777766653 2222222222 47999999999999888855 4444444445
Q ss_pred HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 017641 325 SICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (368)
..+++-.|..++++..+.+|+ --|...
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 555677899999999999997 366543
No 278
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=21.71 E-value=4e+02 Score=23.49 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCcCChhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccC----------ccchHHHHHHHHH
Q 017641 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----------SELHGLAALQWSI 326 (368)
Q Consensus 257 tke~LaaYrk~~Gl~Vd~~~~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----------S~LGGeaqLwLAi 326 (368)
+.+.|..+-++.|+.++++....+- .+-.|..+.++..++++....... +.........+.-
T Consensus 183 ~~~~l~~~~~~~~~~~~~~a~~~l~--------~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~ 254 (373)
T 1jr3_A 183 IRHQLEHILNEEHIAHEPRALQLLA--------RAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVE 254 (373)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHH--------HHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH--------HHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCCCHHHHHHHHH
Confidence 4556666666678888886544321 124789999999998876432100 0111222223333
Q ss_pred HHHhcCChHHHHHHHHHHhc
Q 017641 327 CQDSLHRPKEARIMYEKLQS 346 (368)
Q Consensus 327 AydA~GR~~EAiaLYkkL~s 346 (368)
+. ..++..+|+.+++.|..
T Consensus 255 ~~-~~~~~~~~~~~~~~l~~ 273 (373)
T 1jr3_A 255 AM-VEANGERVMALINEAAA 273 (373)
T ss_dssp HH-HHTCHHHHHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHHHHHH
Confidence 32 23677889999998864
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.48 E-value=1.3e+02 Score=24.46 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 017641 297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSF 363 (368)
Q Consensus 297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiL 363 (368)
.++++.|...++- . ...+....+.++-.++. .+++....++..|+++.||..|.+.|-.+
T Consensus 142 ~~~~~~L~~~l~d---~---~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ERAVEPLIKALKD---E---DGWVRQSAADALGEIGG-ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp GGGHHHHHHHTTC---S---SHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcC---C---CHHHHHHHHHHHHHhCc-hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3566666554431 1 23567666777777764 67777777787788888888888776543
No 280
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.22 E-value=39 Score=26.02 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=6.5
Q ss_pred HHHHHHhcCchhhhh
Q 017641 286 DGDSLMDSGKLKEAL 300 (368)
Q Consensus 286 ~Gk~AmerGkYr~AV 300 (368)
....+|+||+|.+|+
T Consensus 46 r~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 46 RLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHccchHhHhh
Confidence 457899999999987
No 281
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.63 E-value=86 Score=25.85 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.9
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 017641 325 SICQDSLHRPKEARIMYEK 343 (368)
Q Consensus 325 AiAydA~GR~~EAiaLYkk 343 (368)
|+-+|..|+.++|+.+|..
T Consensus 25 Ave~D~ag~y~eAl~lY~~ 43 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQH 43 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHH
Confidence 4567899999999999975
No 282
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.52 E-value=1.8e+02 Score=24.52 Aligned_cols=61 Identities=10% Similarity=-0.065 Sum_probs=41.1
Q ss_pred HHHHHHHhhcccCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 017641 301 PFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF 361 (368)
Q Consensus 301 ~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (368)
...|+|+......-..+....|.=.+-.+..|=.+-+++|=++|.+|+|+.+.-+|=.||-
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd 79 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLE 79 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3556776666555566666666555555565666667777788887899888877766653
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=20.35 E-value=2.2e+02 Score=24.92 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccCcc-chHHHHHHHHHHHHhcCCh
Q 017641 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE-LHGLAALQWSICQDSLHRP 334 (368)
Q Consensus 277 ~~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~-LGGeaqLwLAiAydA~GR~ 334 (368)
-+.++=.|=.|+-+|-+++|.+|-++|..|...++..+. ---.+..+|..|-=-+|+.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 456666888999999999999999999999999986541 1123344454444445553
No 284
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=20.30 E-value=54 Score=29.99 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCchhhhhHH----HHHHHhhcccCccchHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHHHHHH
Q 017641 284 LKDGDSLMDSGKLKEALPF----YEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNALVSKR 355 (368)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~----lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~eVrKQ 355 (368)
+++++.+.+..+.+.||++ |+++.+...-+.. .|---+|-++ +...+||++.|+++..+|+..++++
T Consensus 2 ~~~~~~~~e~~~ikdAv~~~~~fy~~i~e~~G~Ky~-----kiA~elA~~~kGKkIRs~ddAl~s~eK~k~nl~~K~~~k 76 (191)
T 2i88_A 2 LKKAQNNLLNSQIKDAVDATVSFYQTLTEKYGEKYS-----KMAQELADKSKGKKIGNVNEALAAFEKYKDVLNKKFSKA 76 (191)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHSCHHHH-----HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHSSCHH
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHhcCCCccCCHHHHHHHHHHHhhChhhhccHh
Confidence 4566777777778888764 6666655443332 1212223345 3458999999999999999999877
Q ss_pred HHH
Q 017641 356 ARQ 358 (368)
Q Consensus 356 Akr 358 (368)
=|.
T Consensus 77 Dr~ 79 (191)
T 2i88_A 77 DRD 79 (191)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
Done!