Query 017642
Match_columns 368
No_of_seqs 796 out of 1920
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 10:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.5E-42 1.8E-46 281.0 25.4 252 78-344 108-450 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-39 1.4E-43 267.1 18.3 242 76-331 208-458 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-38 3.5E-43 264.8 18.7 250 83-346 173-431 (459)
4 KOG0271 Notchless-like WD40 re 100.0 7.9E-37 1.7E-41 251.8 21.1 244 75-331 147-479 (480)
5 KOG0315 G-protein beta subunit 100.0 9.7E-36 2.1E-40 232.3 25.3 253 80-344 35-299 (311)
6 KOG0263 Transcription initiati 100.0 2.5E-36 5.3E-41 270.0 22.0 243 84-338 377-654 (707)
7 KOG0279 G protein beta subunit 100.0 1.7E-34 3.7E-39 228.9 28.6 253 79-344 9-273 (315)
8 KOG0286 G-protein beta subunit 100.0 1.8E-34 3.8E-39 230.2 28.2 255 79-345 49-315 (343)
9 KOG0286 G-protein beta subunit 100.0 6.3E-34 1.4E-38 227.0 27.4 237 82-331 94-343 (343)
10 KOG2111 Uncharacterized conser 100.0 8.9E-34 1.9E-38 228.9 28.1 270 87-368 7-280 (346)
11 KOG0279 G protein beta subunit 100.0 7.4E-34 1.6E-38 225.3 25.9 243 78-334 56-314 (315)
12 KOG0295 WD40 repeat-containing 100.0 1.1E-33 2.5E-38 231.8 23.3 250 79-342 102-373 (406)
13 KOG0273 Beta-transducin family 100.0 3.1E-33 6.8E-38 236.3 25.5 245 85-344 235-493 (524)
14 KOG0266 WD40 repeat-containing 100.0 1.6E-31 3.4E-36 244.0 30.9 253 82-344 156-420 (456)
15 KOG0316 Conserved WD40 repeat- 100.0 5.5E-32 1.2E-36 209.8 22.2 249 77-341 9-265 (307)
16 KOG0295 WD40 repeat-containing 100.0 4E-32 8.7E-37 222.8 20.4 243 79-332 144-405 (406)
17 KOG0265 U5 snRNP-specific prot 100.0 2.4E-31 5.2E-36 213.1 22.9 249 78-338 40-301 (338)
18 KOG0263 Transcription initiati 100.0 2.7E-31 5.9E-36 237.8 24.2 207 72-290 438-650 (707)
19 KOG0285 Pleiotropic regulator 100.0 3.7E-31 8.1E-36 216.7 22.6 247 77-339 143-395 (460)
20 KOG0291 WD40-repeat-containing 100.0 1.2E-30 2.5E-35 232.3 26.4 246 81-339 346-618 (893)
21 KOG0645 WD40 repeat protein [G 100.0 1.6E-29 3.4E-34 200.0 29.6 247 78-333 7-311 (312)
22 KOG0282 mRNA splicing factor [ 100.0 2.7E-32 5.9E-37 231.4 14.7 240 79-331 208-503 (503)
23 KOG0284 Polyadenylation factor 100.0 5E-32 1.1E-36 225.2 14.7 243 80-335 133-382 (464)
24 KOG0296 Angio-associated migra 100.0 2.3E-30 5E-35 212.6 24.3 245 77-333 98-398 (399)
25 KOG0273 Beta-transducin family 100.0 3.2E-30 7E-35 218.1 25.2 243 77-333 268-523 (524)
26 KOG0284 Polyadenylation factor 100.0 6.2E-32 1.4E-36 224.7 14.0 243 85-342 96-346 (464)
27 KOG0291 WD40-repeat-containing 100.0 1.4E-29 2.9E-34 225.6 28.6 242 83-339 305-556 (893)
28 KOG0276 Vesicle coat complex C 100.0 1.6E-30 3.4E-35 227.1 22.2 249 82-343 10-267 (794)
29 KOG0318 WD40 repeat stress pro 100.0 1.8E-29 3.9E-34 216.3 28.1 250 79-338 184-565 (603)
30 KOG1407 WD40 repeat protein [F 100.0 3E-30 6.6E-35 203.0 21.0 253 79-344 14-272 (313)
31 cd00200 WD40 WD40 domain, foun 100.0 5.9E-29 1.3E-33 214.6 31.2 248 81-342 5-258 (289)
32 KOG0266 WD40 repeat-containing 100.0 1.1E-29 2.5E-34 231.8 27.1 240 81-333 199-454 (456)
33 KOG0293 WD40 repeat-containing 100.0 4.1E-30 8.9E-35 214.2 21.5 249 74-335 213-515 (519)
34 KOG0265 U5 snRNP-specific prot 100.0 9.3E-30 2E-34 204.0 22.4 241 77-331 82-336 (338)
35 KOG0643 Translation initiation 100.0 5.2E-29 1.1E-33 196.7 26.1 243 80-334 5-318 (327)
36 KOG0283 WD40 repeat-containing 100.0 1.8E-29 4E-34 227.9 26.2 247 79-337 261-580 (712)
37 KOG0281 Beta-TrCP (transducin 100.0 3.2E-31 6.9E-36 216.4 12.4 234 83-340 195-435 (499)
38 KOG2110 Uncharacterized conser 100.0 7.1E-28 1.5E-32 198.5 29.7 244 85-336 5-251 (391)
39 KOG0315 G-protein beta subunit 100.0 1.2E-28 2.6E-33 192.7 23.9 220 77-311 75-308 (311)
40 cd00200 WD40 WD40 domain, foun 100.0 6.1E-28 1.3E-32 208.2 30.5 238 80-331 46-289 (289)
41 PLN00181 protein SPA1-RELATED; 100.0 5.1E-28 1.1E-32 236.6 33.0 240 82-336 480-741 (793)
42 KOG0319 WD40-repeat-containing 100.0 4.1E-29 8.8E-34 222.1 22.1 250 75-336 355-622 (775)
43 KOG0292 Vesicle coat complex C 100.0 8E-29 1.7E-33 224.2 21.0 242 84-339 8-286 (1202)
44 KOG0292 Vesicle coat complex C 100.0 5.8E-28 1.3E-32 218.7 25.8 241 80-335 46-323 (1202)
45 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-26 2.9E-31 187.5 29.5 248 84-343 13-272 (311)
46 KOG0318 WD40 repeat stress pro 100.0 3.2E-27 7E-32 202.6 26.7 254 78-340 52-357 (603)
47 PLN00181 protein SPA1-RELATED; 100.0 5.1E-27 1.1E-31 229.6 32.2 236 84-332 531-792 (793)
48 KOG0305 Anaphase promoting com 100.0 1.8E-27 3.9E-32 209.6 24.7 246 79-336 211-464 (484)
49 KOG0306 WD40-repeat-containing 100.0 8.9E-28 1.9E-32 214.0 22.8 244 80-334 368-665 (888)
50 KOG0281 Beta-TrCP (transducin 100.0 1E-28 2.2E-33 201.9 15.2 241 78-344 230-488 (499)
51 KOG0278 Serine/threonine kinas 100.0 1.7E-28 3.8E-33 192.0 14.5 242 79-338 53-302 (334)
52 KOG0276 Vesicle coat complex C 100.0 2.3E-27 4.9E-32 207.5 22.1 233 83-327 53-293 (794)
53 KOG0294 WD40 repeat-containing 100.0 1.4E-26 3.1E-31 187.0 24.0 241 79-338 37-286 (362)
54 KOG0319 WD40-repeat-containing 100.0 3.2E-27 6.9E-32 210.2 20.9 249 81-344 319-588 (775)
55 KOG0277 Peroxisomal targeting 100.0 2.4E-27 5.1E-32 186.1 17.6 239 82-332 57-308 (311)
56 KOG0296 Angio-associated migra 100.0 2.9E-26 6.2E-31 188.6 24.2 250 79-344 58-367 (399)
57 KOG0275 Conserved WD40 repeat- 100.0 2.6E-28 5.6E-33 197.9 12.1 242 79-331 207-507 (508)
58 KOG0640 mRNA cleavage stimulat 100.0 8.8E-27 1.9E-31 187.9 20.1 244 80-333 107-426 (430)
59 KOG0645 WD40 repeat protein [G 100.0 1.3E-25 2.8E-30 177.9 25.0 200 122-333 8-225 (312)
60 PTZ00421 coronin; Provisional 100.0 2.4E-25 5.2E-30 202.8 30.3 246 84-339 19-296 (493)
61 KOG0285 Pleiotropic regulator 100.0 6.7E-26 1.4E-30 186.0 23.1 243 80-336 188-442 (460)
62 PTZ00421 coronin; Provisional 100.0 4.2E-25 9E-30 201.3 30.7 228 79-314 69-314 (493)
63 KOG0973 Histone transcription 99.9 3.7E-26 7.9E-31 211.8 23.1 253 75-336 59-358 (942)
64 KOG0313 Microtubule binding pr 99.9 8.7E-26 1.9E-30 186.6 22.8 244 76-333 135-418 (423)
65 KOG0274 Cdc4 and related F-box 99.9 1.6E-25 3.4E-30 204.4 25.7 240 81-341 245-490 (537)
66 KOG0310 Conserved WD40 repeat- 99.9 3.3E-25 7E-30 188.8 25.6 240 81-337 64-313 (487)
67 KOG0288 WD40 repeat protein Ti 99.9 2.6E-26 5.7E-31 191.6 18.4 239 78-331 212-459 (459)
68 KOG0310 Conserved WD40 repeat- 99.9 1.5E-25 3.2E-30 190.9 22.2 239 84-336 25-271 (487)
69 KOG0288 WD40 repeat protein Ti 99.9 6.2E-27 1.3E-31 195.3 13.4 254 77-344 167-428 (459)
70 KOG0274 Cdc4 and related F-box 99.9 1.9E-25 4E-30 203.9 23.1 242 83-344 206-452 (537)
71 KOG0316 Conserved WD40 repeat- 99.9 2.5E-25 5.5E-30 172.9 19.5 203 127-344 15-224 (307)
72 KOG1407 WD40 repeat protein [F 99.9 1.3E-24 2.8E-29 171.4 23.5 239 79-333 58-311 (313)
73 KOG0264 Nucleosome remodeling 99.9 2.3E-25 5E-30 188.3 20.5 247 79-334 118-405 (422)
74 KOG2096 WD40 repeat protein [G 99.9 9.5E-25 2.1E-29 176.8 22.8 243 76-331 77-400 (420)
75 KOG0313 Microtubule binding pr 99.9 5.5E-25 1.2E-29 181.9 21.1 244 75-336 95-379 (423)
76 PTZ00420 coronin; Provisional 99.9 9.7E-24 2.1E-28 193.4 30.8 219 105-336 53-296 (568)
77 KOG0772 Uncharacterized conser 99.9 2.2E-25 4.7E-30 191.1 18.5 249 80-340 162-452 (641)
78 KOG0289 mRNA splicing factor [ 99.9 2.9E-24 6.2E-29 180.6 24.8 240 83-335 217-464 (506)
79 KOG0268 Sof1-like rRNA process 99.9 7E-26 1.5E-30 186.2 14.6 248 80-338 61-350 (433)
80 KOG0299 U3 snoRNP-associated p 99.9 1.1E-24 2.3E-29 184.4 21.3 250 78-337 135-414 (479)
81 KOG0277 Peroxisomal targeting 99.9 8.5E-25 1.8E-29 171.8 19.0 236 89-337 12-269 (311)
82 PTZ00420 coronin; Provisional 99.9 1.5E-23 3.3E-28 192.1 29.6 228 79-316 68-319 (568)
83 KOG0647 mRNA export protein (c 99.9 1.4E-23 3.1E-28 168.8 24.5 257 78-347 20-295 (347)
84 KOG0308 Conserved WD40 repeat- 99.9 3.6E-25 7.8E-30 194.6 16.2 229 95-335 35-287 (735)
85 KOG0278 Serine/threonine kinas 99.9 5.6E-25 1.2E-29 172.5 15.5 201 81-293 96-301 (334)
86 KOG0282 mRNA splicing factor [ 99.9 1.6E-25 3.5E-30 190.4 13.5 210 126-344 211-473 (503)
87 KOG0641 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 157.2 26.9 239 84-335 31-305 (350)
88 KOG1332 Vesicle coat complex C 99.9 2.7E-24 5.9E-29 168.0 17.7 249 78-335 4-288 (299)
89 KOG0641 WD40 repeat protein [G 99.9 3.3E-22 7.3E-27 154.8 26.9 246 78-333 82-349 (350)
90 KOG0275 Conserved WD40 repeat- 99.9 8.2E-25 1.8E-29 177.7 12.4 210 127-345 211-479 (508)
91 KOG0973 Histone transcription 99.9 3.4E-23 7.4E-28 192.3 24.6 247 82-340 10-319 (942)
92 KOG1036 Mitotic spindle checkp 99.9 6.3E-23 1.4E-27 165.6 22.8 243 79-337 48-320 (323)
93 KOG0639 Transducin-like enhanc 99.9 2.7E-24 5.8E-29 184.0 15.7 235 84-332 464-703 (705)
94 KOG1036 Mitotic spindle checkp 99.9 1.6E-22 3.5E-27 163.3 23.7 245 83-344 11-273 (323)
95 KOG0647 mRNA export protein (c 99.9 8.4E-23 1.8E-27 164.4 21.9 228 79-321 66-311 (347)
96 KOG0639 Transducin-like enhanc 99.9 4.8E-23 1E-27 176.3 21.7 247 81-339 415-669 (705)
97 KOG4283 Transcription-coupled 99.9 7E-23 1.5E-27 164.4 20.7 209 76-292 34-279 (397)
98 KOG0289 mRNA splicing factor [ 99.9 1.7E-22 3.7E-27 170.0 23.1 240 79-332 255-505 (506)
99 KOG0301 Phospholipase A2-activ 99.9 9.6E-23 2.1E-27 180.7 22.5 235 82-339 54-294 (745)
100 KOG1274 WD40 repeat protein [G 99.9 3.9E-22 8.4E-27 182.1 26.2 244 80-336 8-265 (933)
101 KOG0283 WD40 repeat-containing 99.9 5.2E-23 1.1E-27 186.5 20.2 204 126-338 264-537 (712)
102 KOG0293 WD40 repeat-containing 99.9 1.2E-23 2.5E-28 175.9 14.8 205 78-290 262-514 (519)
103 KOG0306 WD40-repeat-containing 99.9 5E-22 1.1E-26 177.7 26.0 241 85-339 320-586 (888)
104 KOG1446 Histone H3 (Lys4) meth 99.9 3.3E-21 7.2E-26 156.4 27.4 241 80-336 51-306 (311)
105 KOG2445 Nuclear pore complex c 99.9 5.7E-22 1.2E-26 160.1 22.6 245 79-334 7-319 (361)
106 KOG0299 U3 snoRNP-associated p 99.9 2.7E-22 5.8E-27 170.0 21.7 236 82-334 199-457 (479)
107 KOG0300 WD40 repeat-containing 99.9 1.9E-22 4.2E-27 163.5 19.4 242 79-336 142-431 (481)
108 KOG0301 Phospholipase A2-activ 99.9 1.5E-22 3.3E-27 179.4 20.1 235 80-333 9-249 (745)
109 KOG0640 mRNA cleavage stimulat 99.9 5.2E-23 1.1E-27 166.3 14.6 209 127-345 110-347 (430)
110 KOG2055 WD40 repeat protein [G 99.9 8.6E-22 1.9E-26 167.0 21.4 239 84-333 212-512 (514)
111 KOG0305 Anaphase promoting com 99.9 7.9E-22 1.7E-26 174.1 22.1 241 89-345 181-431 (484)
112 KOG0267 Microtubule severing p 99.9 5.7E-24 1.2E-28 189.2 8.5 218 99-336 6-229 (825)
113 KOG0308 Conserved WD40 repeat- 99.9 1.1E-22 2.4E-27 179.1 16.4 244 79-335 67-329 (735)
114 KOG0643 Translation initiation 99.9 1.7E-21 3.8E-26 154.3 21.5 204 127-340 8-227 (327)
115 KOG0646 WD40 repeat protein [G 99.9 5.4E-22 1.2E-26 168.4 19.5 221 81-316 77-332 (476)
116 KOG2919 Guanine nucleotide-bin 99.9 1.5E-21 3.3E-26 158.6 20.5 242 85-337 49-331 (406)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.8E-20 6.2E-25 162.3 30.4 237 87-339 32-285 (300)
118 KOG0646 WD40 repeat protein [G 99.9 1E-21 2.2E-26 166.8 20.3 235 98-342 51-316 (476)
119 KOG0269 WD40 repeat-containing 99.9 3.1E-22 6.7E-27 179.5 16.8 240 85-335 39-298 (839)
120 KOG0772 Uncharacterized conser 99.9 7E-22 1.5E-26 169.7 17.8 206 122-337 161-398 (641)
121 KOG0267 Microtubule severing p 99.9 4.4E-23 9.6E-28 183.6 9.6 231 81-325 24-260 (825)
122 KOG1273 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 152.9 21.4 237 88-337 26-326 (405)
123 KOG1408 WD40 repeat protein [F 99.9 2.9E-21 6.4E-26 172.0 19.2 237 83-334 457-714 (1080)
124 KOG2048 WD40 repeat protein [G 99.9 6.4E-20 1.4E-24 162.6 26.6 241 83-337 23-279 (691)
125 KOG0270 WD40 repeat-containing 99.9 6.6E-21 1.4E-25 161.0 18.9 242 89-338 177-454 (463)
126 KOG4283 Transcription-coupled 99.9 1.7E-20 3.7E-25 150.8 18.6 206 127-340 41-283 (397)
127 KOG0302 Ribosome Assembly prot 99.9 1.5E-20 3.2E-25 155.8 17.8 189 139-337 163-382 (440)
128 KOG0269 WD40 repeat-containing 99.9 2.1E-21 4.6E-26 174.2 13.1 237 87-335 89-342 (839)
129 KOG1332 Vesicle coat complex C 99.9 4.6E-21 9.9E-26 150.1 13.1 198 127-333 9-241 (299)
130 KOG0650 WD40 repeat nucleolar 99.9 4.6E-20 9.9E-25 161.3 20.2 262 57-331 374-678 (733)
131 KOG0302 Ribosome Assembly prot 99.9 9E-20 2E-24 151.2 20.4 239 81-331 147-436 (440)
132 KOG1539 WD repeat protein [Gen 99.9 9.2E-20 2E-24 165.0 21.4 160 176-341 449-614 (910)
133 KOG4378 Nuclear protein COP1 [ 99.9 4.8E-20 1E-24 157.9 18.1 236 87-337 36-284 (673)
134 KOG0300 WD40 repeat-containing 99.9 5E-20 1.1E-24 149.6 17.0 246 78-336 183-479 (481)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-18 3.8E-23 151.0 28.0 227 98-338 2-242 (300)
136 KOG0307 Vesicle coat complex C 99.8 7.2E-21 1.6E-25 177.9 13.1 245 85-338 64-332 (1049)
137 KOG0321 WD40 repeat-containing 99.8 1.2E-19 2.5E-24 159.9 19.6 244 82-338 97-396 (720)
138 KOG2106 Uncharacterized conser 99.8 3.4E-18 7.3E-23 147.0 27.9 237 84-337 199-481 (626)
139 KOG1408 WD40 repeat protein [F 99.8 1.5E-19 3.4E-24 161.1 20.5 256 81-344 365-682 (1080)
140 KOG0264 Nucleosome remodeling 99.8 5.1E-20 1.1E-24 156.1 16.5 201 80-289 172-404 (422)
141 KOG1539 WD repeat protein [Gen 99.8 4.7E-19 1E-23 160.5 22.6 234 86-333 396-648 (910)
142 KOG2106 Uncharacterized conser 99.8 7.2E-18 1.6E-22 145.0 27.9 229 86-332 247-520 (626)
143 KOG0294 WD40 repeat-containing 99.8 1.9E-18 4.1E-23 140.3 22.8 221 100-337 4-241 (362)
144 KOG1274 WD40 repeat protein [G 99.8 9.7E-19 2.1E-23 160.1 22.8 226 84-330 55-297 (933)
145 KOG1034 Transcriptional repres 99.8 4.1E-18 9E-23 139.1 23.4 246 79-333 32-383 (385)
146 KOG0322 G-protein beta subunit 99.8 2.3E-19 5E-24 142.2 15.5 238 80-332 9-322 (323)
147 KOG1063 RNA polymerase II elon 99.8 1.2E-18 2.6E-23 154.9 21.8 250 79-335 261-650 (764)
148 KOG1063 RNA polymerase II elon 99.8 9.2E-19 2E-23 155.6 20.9 246 79-334 355-700 (764)
149 KOG0268 Sof1-like rRNA process 99.8 4.2E-20 9.1E-25 152.4 11.4 203 127-340 64-309 (433)
150 KOG2096 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 142.8 17.9 197 127-334 84-309 (420)
151 KOG1538 Uncharacterized conser 99.8 9.2E-19 2E-23 155.2 19.1 231 87-335 14-295 (1081)
152 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-18 2.3E-23 149.8 16.7 216 87-315 81-305 (673)
153 KOG4328 WD40 protein [Function 99.8 3.4E-18 7.3E-23 145.3 17.9 249 78-336 179-453 (498)
154 KOG2048 WD40 repeat protein [G 99.8 2.1E-17 4.5E-22 146.8 23.5 230 128-367 24-270 (691)
155 KOG1273 WD40 repeat protein [G 99.8 8.4E-18 1.8E-22 136.6 18.8 193 132-334 26-227 (405)
156 KOG1009 Chromatin assembly com 99.8 1.3E-17 2.8E-22 139.8 19.9 244 79-336 59-375 (434)
157 KOG1007 WD repeat protein TSSC 99.8 1.6E-17 3.5E-22 133.4 18.8 245 78-333 56-361 (370)
158 KOG0270 WD40 repeat-containing 99.8 6.7E-18 1.5E-22 143.0 16.2 206 79-295 237-455 (463)
159 KOG1445 Tumor-specific antigen 99.8 4.3E-18 9.4E-23 150.2 15.6 100 235-337 646-754 (1012)
160 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-15 3.1E-20 138.5 32.1 249 80-340 60-321 (466)
161 PRK11028 6-phosphogluconolacto 99.8 4.1E-16 8.9E-21 137.9 27.3 239 86-334 35-305 (330)
162 KOG0321 WD40 repeat-containing 99.8 2.6E-17 5.7E-22 145.3 19.2 234 98-340 65-354 (720)
163 KOG1188 WD40 repeat protein [G 99.8 1.4E-17 3.1E-22 136.7 15.3 225 98-334 41-347 (376)
164 KOG1007 WD repeat protein TSSC 99.8 4.2E-17 9.1E-22 131.1 17.4 202 79-289 117-361 (370)
165 KOG0771 Prolactin regulatory e 99.8 2.6E-17 5.6E-22 138.8 15.3 197 133-336 148-357 (398)
166 KOG0307 Vesicle coat complex C 99.7 4.2E-18 9.1E-23 159.6 10.2 243 90-343 11-294 (1049)
167 KOG0642 Cell-cycle nuclear pro 99.7 2E-17 4.4E-22 144.1 13.6 249 80-338 289-566 (577)
168 KOG1272 WD40-repeat-containing 99.7 8.3E-18 1.8E-22 143.2 10.2 227 85-331 129-360 (545)
169 KOG2445 Nuclear pore complex c 99.7 1.4E-15 3E-20 123.5 21.9 201 126-336 10-259 (361)
170 KOG4328 WD40 protein [Function 99.7 8.4E-17 1.8E-21 136.9 15.3 197 128-333 185-399 (498)
171 KOG2919 Guanine nucleotide-bin 99.7 3.5E-16 7.7E-21 127.7 17.9 240 81-334 100-368 (406)
172 KOG0290 Conserved WD40 repeat- 99.7 7E-16 1.5E-20 124.2 19.2 239 86-337 45-322 (364)
173 KOG0290 Conserved WD40 repeat- 99.7 5E-16 1.1E-20 125.1 18.3 237 82-330 93-362 (364)
174 KOG1524 WD40 repeat-containing 99.7 1.5E-16 3.2E-21 138.0 16.2 224 82-331 11-284 (737)
175 KOG0650 WD40 repeat nucleolar 99.7 8.1E-16 1.7E-20 135.1 20.5 200 127-335 398-639 (733)
176 KOG2055 WD40 repeat protein [G 99.7 1.1E-15 2.4E-20 130.3 20.2 198 126-336 210-420 (514)
177 KOG0303 Actin-binding protein 99.7 2.1E-15 4.5E-20 126.3 20.7 210 72-292 68-297 (472)
178 KOG4227 WD40 repeat protein [G 99.7 2.4E-15 5.3E-20 125.9 21.1 243 80-333 51-387 (609)
179 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 2.9E-20 138.6 21.1 251 77-338 234-521 (555)
180 KOG0644 Uncharacterized conser 99.7 9.8E-17 2.1E-21 145.7 12.5 243 81-339 186-474 (1113)
181 KOG0303 Actin-binding protein 99.7 5.9E-15 1.3E-19 123.6 21.7 201 126-336 78-297 (472)
182 KOG1538 Uncharacterized conser 99.7 3.2E-15 7E-20 133.0 20.2 199 74-288 42-292 (1081)
183 PF08662 eIF2A: Eukaryotic tra 99.7 3.7E-15 8.1E-20 120.1 18.8 146 180-333 10-179 (194)
184 KOG2394 WD40 protein DMR-N9 [G 99.7 3.8E-15 8.3E-20 129.4 19.7 240 87-339 125-458 (636)
185 KOG1963 WD40 repeat protein [G 99.7 1.3E-14 2.8E-19 133.1 24.1 237 91-342 22-331 (792)
186 COG2319 FOG: WD40 repeat [Gene 99.7 1.1E-13 2.3E-18 126.1 30.7 238 86-336 110-362 (466)
187 KOG2110 Uncharacterized conser 99.7 2.7E-13 5.7E-18 113.0 29.0 230 87-335 48-332 (391)
188 KOG0649 WD40 repeat protein [G 99.7 9.9E-14 2.1E-18 109.3 23.3 226 87-333 12-274 (325)
189 PRK01742 tolB translocation pr 99.7 5.4E-15 1.2E-19 135.0 19.1 215 80-314 198-426 (429)
190 PRK11028 6-phosphogluconolacto 99.7 1.7E-13 3.7E-18 121.3 26.9 222 104-336 10-261 (330)
191 KOG2139 WD40 repeat protein [G 99.7 1.2E-13 2.6E-18 114.7 23.8 249 79-334 134-432 (445)
192 PRK01742 tolB translocation pr 99.7 1.8E-14 3.9E-19 131.5 20.4 209 107-333 185-401 (429)
193 KOG1963 WD40 repeat protein [G 99.6 1.5E-13 3.2E-18 126.2 24.3 254 75-336 195-541 (792)
194 KOG1272 WD40-repeat-containing 99.6 6.1E-16 1.3E-20 132.0 8.3 196 130-338 130-328 (545)
195 KOG0649 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 107.0 22.2 230 82-330 59-313 (325)
196 KOG1034 Transcriptional repres 99.6 2.6E-14 5.6E-19 117.2 17.1 162 174-337 37-215 (385)
197 KOG1587 Cytoplasmic dynein int 99.6 5.4E-14 1.2E-18 128.3 19.6 223 107-342 223-481 (555)
198 PRK03629 tolB translocation pr 99.6 5.2E-13 1.1E-17 121.7 25.8 213 108-334 181-407 (429)
199 KOG1517 Guanine nucleotide bin 99.6 6.8E-14 1.5E-18 130.7 19.9 243 84-337 1108-1385(1387)
200 KOG0771 Prolactin regulatory e 99.6 1.3E-14 2.8E-19 122.7 13.7 189 89-290 148-355 (398)
201 PRK05137 tolB translocation pr 99.6 6.8E-13 1.5E-17 121.6 26.2 218 108-337 184-416 (435)
202 KOG4497 Uncharacterized conser 99.6 8.2E-15 1.8E-19 120.2 11.9 220 90-334 13-241 (447)
203 KOG2315 Predicted translation 99.6 3.3E-13 7.2E-18 118.2 21.9 114 213-334 269-391 (566)
204 KOG1188 WD40 repeat protein [G 99.6 5E-14 1.1E-18 116.1 15.9 178 156-340 50-249 (376)
205 KOG3881 Uncharacterized conser 99.6 2.1E-13 4.6E-18 114.4 19.7 243 84-338 54-325 (412)
206 PRK03629 tolB translocation pr 99.6 3.3E-13 7.2E-18 123.0 22.8 221 81-313 194-427 (429)
207 KOG1523 Actin-related protein 99.6 2.3E-13 5.1E-18 111.3 19.0 221 84-316 9-262 (361)
208 PRK04922 tolB translocation pr 99.6 3E-13 6.4E-18 123.8 22.3 214 108-335 186-413 (433)
209 PRK04922 tolB translocation pr 99.6 2.4E-13 5.2E-18 124.4 20.5 179 156-338 184-373 (433)
210 KOG2321 WD40 repeat protein [G 99.6 3E-13 6.5E-18 118.7 19.2 242 82-339 48-349 (703)
211 KOG2139 WD40 repeat protein [G 99.6 4.8E-13 1E-17 111.2 19.4 238 83-334 96-384 (445)
212 KOG1517 Guanine nucleotide bin 99.6 3.7E-13 8E-18 125.9 20.6 241 87-336 1066-1336(1387)
213 KOG1523 Actin-related protein 99.6 3.4E-13 7.5E-18 110.3 17.0 199 128-337 9-240 (361)
214 KOG0644 Uncharacterized conser 99.6 7.6E-15 1.7E-19 133.7 8.0 201 127-342 188-435 (1113)
215 PRK02889 tolB translocation pr 99.6 1.1E-12 2.5E-17 119.6 21.8 174 156-337 176-364 (427)
216 KOG1445 Tumor-specific antigen 99.6 6.5E-14 1.4E-18 124.2 13.0 177 156-336 603-801 (1012)
217 PRK02889 tolB translocation pr 99.6 3.5E-12 7.5E-17 116.4 24.9 196 127-332 193-402 (427)
218 KOG1524 WD40 repeat-containing 99.5 2.8E-14 6.1E-19 124.1 10.3 157 156-323 85-246 (737)
219 KOG1009 Chromatin assembly com 99.5 6.5E-14 1.4E-18 117.8 11.9 159 174-338 12-200 (434)
220 KOG2394 WD40 protein DMR-N9 [G 99.5 8.1E-14 1.8E-18 121.3 12.6 184 156-344 144-373 (636)
221 KOG0642 Cell-cycle nuclear pro 99.5 1.4E-13 3.1E-18 120.4 13.6 210 79-299 338-571 (577)
222 PRK05137 tolB translocation pr 99.5 3E-12 6.5E-17 117.4 23.1 174 156-336 182-369 (435)
223 PF08662 eIF2A: Eukaryotic tra 99.5 1.3E-12 2.9E-17 105.3 18.3 135 157-298 40-187 (194)
224 PF10282 Lactonase: Lactonase, 99.5 1.8E-10 3.8E-15 102.3 32.5 239 87-334 38-323 (345)
225 KOG1310 WD40 repeat protein [G 99.5 2.5E-13 5.4E-18 118.6 13.5 211 78-298 43-312 (758)
226 KOG1310 WD40 repeat protein [G 99.5 4.8E-13 1E-17 116.9 14.3 207 122-338 44-308 (758)
227 KOG2111 Uncharacterized conser 99.5 6.8E-11 1.5E-15 97.0 25.4 209 107-333 76-322 (346)
228 TIGR02800 propeller_TolB tol-p 99.5 1.9E-11 4.2E-16 111.9 24.3 212 108-333 172-397 (417)
229 KOG1240 Protein kinase contain 99.5 3.2E-11 6.9E-16 114.9 24.3 251 78-338 1041-1339(1431)
230 PF02239 Cytochrom_D1: Cytochr 99.5 1.8E-10 3.9E-15 102.3 27.6 236 89-339 40-353 (369)
231 KOG1334 WD40 repeat protein [G 99.5 9.8E-13 2.1E-17 113.3 12.7 246 80-338 137-471 (559)
232 COG2706 3-carboxymuconate cycl 99.5 7.5E-10 1.6E-14 92.9 28.8 248 82-336 36-324 (346)
233 PF02239 Cytochrom_D1: Cytochr 99.4 3.3E-10 7.1E-15 100.6 27.4 229 97-337 5-306 (369)
234 TIGR02800 propeller_TolB tol-p 99.4 2.5E-11 5.4E-16 111.2 20.9 177 156-337 170-358 (417)
235 KOG1354 Serine/threonine prote 99.4 2.2E-11 4.9E-16 100.8 18.1 245 84-338 24-364 (433)
236 KOG0322 G-protein beta subunit 99.4 5.3E-12 1.1E-16 100.8 13.6 208 127-344 12-292 (323)
237 PRK04792 tolB translocation pr 99.4 4.4E-11 9.5E-16 109.6 21.7 218 82-313 214-446 (448)
238 PRK01029 tolB translocation pr 99.4 1.7E-10 3.7E-15 105.0 24.9 201 128-338 183-408 (428)
239 PRK00178 tolB translocation pr 99.4 1.7E-10 3.7E-15 105.9 25.3 213 108-334 181-407 (430)
240 PRK04792 tolB translocation pr 99.4 2.1E-10 4.5E-15 105.2 25.5 198 127-333 215-425 (448)
241 PRK00178 tolB translocation pr 99.4 1E-10 2.2E-15 107.4 22.9 219 81-313 194-427 (430)
242 PRK01029 tolB translocation pr 99.4 4.1E-10 8.9E-15 102.5 24.3 224 84-315 183-426 (428)
243 KOG2321 WD40 repeat protein [G 99.4 1.1E-10 2.5E-15 102.8 19.5 208 127-344 49-313 (703)
244 KOG4227 WD40 repeat protein [G 99.4 1.2E-10 2.5E-15 98.2 18.5 154 127-289 54-225 (609)
245 KOG4547 WD40 repeat-containing 99.4 3.4E-10 7.4E-15 100.3 22.0 189 141-342 5-229 (541)
246 TIGR02658 TTQ_MADH_Hv methylam 99.3 5.7E-09 1.2E-13 90.8 28.2 236 93-341 53-338 (352)
247 KOG3881 Uncharacterized conser 99.3 1.7E-10 3.7E-15 97.2 16.9 220 83-315 103-343 (412)
248 KOG4497 Uncharacterized conser 99.3 8.7E-10 1.9E-14 91.1 20.0 233 84-326 90-425 (447)
249 PF10282 Lactonase: Lactonase, 99.3 1.7E-08 3.6E-13 89.7 29.9 218 85-311 86-345 (345)
250 KOG0974 WD-repeat protein WDR6 99.3 1.7E-10 3.8E-15 108.3 16.6 191 156-354 109-309 (967)
251 KOG2315 Predicted translation 99.3 3E-09 6.5E-14 93.8 21.8 220 81-313 161-410 (566)
252 PLN02919 haloacid dehalogenase 99.2 2.2E-08 4.7E-13 100.5 30.7 236 89-337 571-892 (1057)
253 KOG0974 WD-repeat protein WDR6 99.2 4.4E-10 9.6E-15 105.6 17.0 192 86-290 88-289 (967)
254 KOG1409 Uncharacterized conser 99.2 2.1E-09 4.6E-14 89.3 18.5 202 78-289 61-270 (404)
255 KOG0280 Uncharacterized conser 99.2 3E-09 6.5E-14 86.6 19.0 220 107-338 47-289 (339)
256 KOG4547 WD40 repeat-containing 99.2 7.1E-09 1.5E-13 92.1 22.9 185 95-290 3-221 (541)
257 KOG1409 Uncharacterized conser 99.2 1E-09 2.2E-14 91.2 16.0 245 78-337 17-274 (404)
258 KOG1240 Protein kinase contain 99.2 2.2E-09 4.7E-14 102.7 20.0 212 118-338 1038-1278(1431)
259 PRK04043 tolB translocation pr 99.2 2.2E-08 4.8E-13 90.7 25.9 192 131-335 189-402 (419)
260 KOG1064 RAVE (regulator of V-A 99.2 1.1E-10 2.4E-15 115.0 11.0 189 128-339 2207-2404(2439)
261 COG4946 Uncharacterized protei 99.2 3E-08 6.5E-13 86.1 22.8 149 76-234 350-508 (668)
262 COG5354 Uncharacterized protei 99.1 1.5E-08 3.3E-13 88.5 20.2 241 85-335 32-308 (561)
263 KOG3914 WD repeat protein WDR4 99.1 1.5E-09 3.1E-14 92.1 13.5 157 179-339 66-229 (390)
264 KOG1354 Serine/threonine prote 99.1 2.3E-09 5E-14 89.1 13.9 233 85-330 84-431 (433)
265 KOG2041 WD40 repeat protein [G 99.1 1.9E-09 4.1E-14 97.8 14.4 226 85-324 14-279 (1189)
266 KOG2314 Translation initiation 99.1 2.6E-08 5.7E-13 87.9 21.0 238 88-334 213-479 (698)
267 PRK04043 tolB translocation pr 99.1 4.6E-08 1E-12 88.6 23.2 200 87-298 189-408 (419)
268 PF07433 DUF1513: Protein of u 99.1 2.8E-07 6.1E-12 77.6 25.7 235 87-334 6-284 (305)
269 COG5354 Uncharacterized protei 99.1 7.1E-08 1.5E-12 84.5 22.5 237 90-337 136-399 (561)
270 PF08450 SGL: SMP-30/Gluconola 99.1 1.3E-06 2.7E-11 73.9 30.2 211 90-321 4-243 (246)
271 PF04762 IKI3: IKI3 family; I 99.1 2.1E-07 4.6E-12 91.9 27.6 254 77-337 112-460 (928)
272 PF15492 Nbas_N: Neuroblastoma 99.1 7.3E-07 1.6E-11 73.0 25.6 228 90-337 2-263 (282)
273 COG2706 3-carboxymuconate cycl 99.0 4.6E-07 9.9E-12 76.4 24.5 217 89-312 92-345 (346)
274 COG4946 Uncharacterized protei 99.0 1.9E-07 4.1E-12 81.2 22.7 144 186-337 331-481 (668)
275 KOG1064 RAVE (regulator of V-A 99.0 2.2E-09 4.8E-14 106.2 12.2 193 83-299 2206-2408(2439)
276 KOG2314 Translation initiation 99.0 9.6E-08 2.1E-12 84.5 20.6 236 90-334 310-574 (698)
277 KOG0280 Uncharacterized conser 99.0 9.4E-08 2E-12 78.1 18.9 180 156-341 46-250 (339)
278 KOG4532 WD40-like repeat conta 99.0 1.8E-07 4E-12 75.5 19.1 236 90-337 72-335 (344)
279 PF13360 PQQ_2: PQQ-like domai 99.0 1.5E-06 3.3E-11 73.0 26.1 215 105-337 2-234 (238)
280 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.8E-06 3.8E-11 75.5 26.2 219 106-340 27-294 (352)
281 KOG0882 Cyclophilin-related pe 98.9 1.8E-08 3.9E-13 86.8 12.8 247 80-338 4-310 (558)
282 KOG4190 Uncharacterized conser 98.9 1.7E-09 3.6E-14 95.4 6.7 199 127-335 733-950 (1034)
283 COG5170 CDC55 Serine/threonine 98.9 8.1E-08 1.8E-12 79.1 15.7 239 83-332 24-366 (460)
284 PF08450 SGL: SMP-30/Gluconola 98.9 6.5E-06 1.4E-10 69.6 28.2 193 134-337 4-216 (246)
285 PLN02919 haloacid dehalogenase 98.9 9.1E-07 2E-11 89.1 26.5 197 87-293 625-892 (1057)
286 KOG2041 WD40 repeat protein [G 98.9 1.9E-07 4E-12 85.2 18.5 228 78-319 64-324 (1189)
287 KOG1912 WD40 repeat protein [G 98.9 4E-07 8.6E-12 83.8 20.5 233 88-334 18-305 (1062)
288 PF04762 IKI3: IKI3 family; I 98.9 8.1E-07 1.8E-11 87.8 23.5 238 83-334 73-334 (928)
289 KOG4532 WD40-like repeat conta 98.9 7.1E-07 1.5E-11 72.2 18.6 190 140-338 83-287 (344)
290 PF07433 DUF1513: Protein of u 98.8 3.5E-06 7.7E-11 71.1 22.9 183 156-341 28-255 (305)
291 KOG0309 Conserved WD40 repeat- 98.8 3.7E-08 8.1E-13 89.9 11.9 239 87-335 69-341 (1081)
292 KOG1334 WD40 repeat protein [G 98.8 3.3E-08 7.1E-13 86.0 10.9 201 123-332 137-365 (559)
293 PF00400 WD40: WD domain, G-be 98.8 1.9E-08 4E-13 58.2 6.4 39 291-331 1-39 (39)
294 KOG1912 WD40 repeat protein [G 98.8 3E-06 6.6E-11 78.2 23.5 93 272-367 439-540 (1062)
295 KOG3914 WD repeat protein WDR4 98.8 1E-07 2.2E-12 81.1 12.1 151 137-298 70-232 (390)
296 KOG4190 Uncharacterized conser 98.8 2.9E-08 6.3E-13 87.8 9.1 211 75-298 725-957 (1034)
297 TIGR03300 assembly_YfgL outer 98.8 9.5E-06 2.1E-10 73.3 25.2 220 96-339 104-344 (377)
298 PF00400 WD40: WD domain, G-be 98.8 3.2E-08 6.8E-13 57.2 5.8 38 249-287 2-39 (39)
299 TIGR03300 assembly_YfgL outer 98.7 1.1E-05 2.4E-10 72.9 25.0 218 97-338 65-302 (377)
300 PF04053 Coatomer_WDAD: Coatom 98.7 5.4E-06 1.2E-10 75.2 22.3 217 85-333 32-262 (443)
301 KOG4714 Nucleoporin [Nuclear s 98.7 4.4E-07 9.6E-12 73.0 13.1 133 193-331 158-316 (319)
302 KOG1920 IkappaB kinase complex 98.7 8E-06 1.7E-10 79.2 22.3 200 127-334 66-323 (1265)
303 PF06433 Me-amine-dh_H: Methyl 98.6 0.00012 2.6E-09 62.8 26.3 240 90-340 40-327 (342)
304 KOG1920 IkappaB kinase complex 98.6 6.8E-06 1.5E-10 79.7 20.4 242 79-333 103-365 (1265)
305 PF15492 Nbas_N: Neuroblastoma 98.6 3.5E-05 7.6E-10 63.4 20.8 199 86-299 44-269 (282)
306 KOG2695 WD40 repeat protein [G 98.6 2.7E-07 5.9E-12 77.1 8.6 150 90-250 216-379 (425)
307 PF11768 DUF3312: Protein of u 98.6 7.2E-06 1.6E-10 73.9 17.2 135 195-335 185-331 (545)
308 KOG2695 WD40 repeat protein [G 98.5 6.7E-07 1.5E-11 74.9 8.2 140 192-337 232-380 (425)
309 COG5170 CDC55 Serine/threonine 98.5 2.3E-06 4.9E-11 70.8 10.8 199 128-337 25-313 (460)
310 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00027 5.8E-09 64.2 25.3 209 91-319 34-275 (410)
311 KOG0309 Conserved WD40 repeat- 98.4 2.4E-06 5.1E-11 78.5 11.4 220 83-316 22-258 (1081)
312 COG0823 TolB Periplasmic compo 98.4 1.4E-05 3E-10 72.3 16.4 160 157-322 219-388 (425)
313 COG0823 TolB Periplasmic compo 98.4 6.7E-05 1.5E-09 67.9 20.3 174 156-336 173-361 (425)
314 PRK02888 nitrous-oxide reducta 98.4 0.0001 2.2E-09 68.4 20.8 166 156-334 215-405 (635)
315 PRK11138 outer membrane biogen 98.4 0.00013 2.8E-09 66.4 21.7 220 98-337 70-316 (394)
316 KOG4714 Nucleoporin [Nuclear s 98.4 3.4E-06 7.4E-11 68.0 9.2 72 260-334 181-255 (319)
317 PF13360 PQQ_2: PQQ-like domai 98.4 0.0002 4.3E-09 60.1 20.7 174 155-336 2-194 (238)
318 PF03178 CPSF_A: CPSF A subuni 98.3 0.00073 1.6E-08 59.6 24.8 216 107-330 3-262 (321)
319 KOG2114 Vacuolar assembly/sort 98.3 0.00038 8.3E-09 65.6 22.8 201 87-298 27-252 (933)
320 KOG1275 PAB-dependent poly(A) 98.3 1.7E-05 3.7E-10 74.8 14.0 177 97-287 147-340 (1118)
321 KOG1645 RING-finger-containing 98.3 7.2E-05 1.6E-09 64.3 16.5 243 78-334 186-462 (463)
322 COG3386 Gluconolactonase [Carb 98.3 0.00068 1.5E-08 58.6 22.7 211 92-322 31-274 (307)
323 PF02897 Peptidase_S9_N: Proly 98.3 0.0014 3E-08 60.1 26.1 243 87-337 125-408 (414)
324 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00036 7.8E-09 62.4 21.5 231 85-321 42-345 (353)
325 KOG0882 Cyclophilin-related pe 98.3 1.7E-05 3.7E-10 68.9 12.3 208 128-342 8-240 (558)
326 PRK11138 outer membrane biogen 98.3 0.00056 1.2E-08 62.2 22.5 221 97-339 120-359 (394)
327 KOG2066 Vacuolar assembly/sort 98.2 0.00012 2.5E-09 68.4 17.0 162 156-336 59-236 (846)
328 PF03178 CPSF_A: CPSF A subuni 98.2 0.00094 2E-08 58.9 22.3 170 156-334 2-203 (321)
329 KOG1832 HIV-1 Vpr-binding prot 98.2 1.5E-06 3.2E-11 81.4 4.0 212 81-320 1097-1318(1516)
330 KOG1275 PAB-dependent poly(A) 98.1 8.8E-05 1.9E-09 70.2 14.5 168 156-331 157-340 (1118)
331 PRK02888 nitrous-oxide reducta 98.1 0.00072 1.6E-08 62.9 20.3 186 92-290 199-405 (635)
332 COG3391 Uncharacterized conser 98.1 0.0076 1.6E-07 54.4 27.6 239 87-339 32-289 (381)
333 KOG3617 WD40 and TPR repeat-co 98.1 0.00013 2.7E-09 68.7 13.8 102 91-202 21-131 (1416)
334 KOG2114 Vacuolar assembly/sort 98.0 0.00028 6E-09 66.5 15.6 186 138-337 32-247 (933)
335 COG3391 Uncharacterized conser 98.0 0.0069 1.5E-07 54.7 24.5 216 88-314 76-309 (381)
336 COG3490 Uncharacterized protei 98.0 0.0038 8.2E-08 51.8 20.3 236 88-331 70-346 (366)
337 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0016 3.6E-08 59.1 20.2 169 157-337 62-250 (410)
338 PF11768 DUF3312: Protein of u 98.0 0.00091 2E-08 60.8 17.6 114 172-290 202-330 (545)
339 PF00780 CNH: CNH domain; Int 98.0 0.005 1.1E-07 53.0 22.1 193 88-299 38-265 (275)
340 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0066 1.4E-07 49.7 21.6 127 97-233 23-154 (354)
341 cd00216 PQQ_DH Dehydrogenases 97.9 0.0071 1.5E-07 56.6 23.7 234 98-340 111-431 (488)
342 PF06977 SdiA-regulated: SdiA- 97.9 0.0087 1.9E-07 50.0 23.9 192 127-330 19-247 (248)
343 PF08553 VID27: VID27 cytoplas 97.9 0.0018 3.9E-08 62.5 19.4 127 156-288 504-646 (794)
344 KOG1008 Uncharacterized conser 97.9 6.2E-06 1.4E-10 74.7 2.6 202 132-343 61-285 (783)
345 PF05694 SBP56: 56kDa selenium 97.8 0.019 4.2E-07 51.1 25.3 223 96-321 86-391 (461)
346 PF08553 VID27: VID27 cytoplas 97.8 0.0068 1.5E-07 58.7 21.3 132 193-333 503-647 (794)
347 KOG4640 Anaphase-promoting com 97.8 0.00013 2.8E-09 66.4 8.7 79 258-340 20-99 (665)
348 KOG1645 RING-finger-containing 97.8 0.00012 2.6E-09 63.0 7.7 91 244-338 179-271 (463)
349 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0033 7.2E-08 56.2 17.5 168 156-337 23-222 (353)
350 PF14583 Pectate_lyase22: Olig 97.7 0.026 5.7E-07 49.7 22.4 230 92-337 42-332 (386)
351 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 40.9 5.6 38 292-331 3-40 (40)
352 PF06433 Me-amine-dh_H: Methyl 97.7 0.026 5.5E-07 48.9 23.2 197 90-299 99-330 (342)
353 PF04053 Coatomer_WDAD: Coatom 97.7 0.0051 1.1E-07 56.1 18.0 180 87-289 70-262 (443)
354 COG3386 Gluconolactonase [Carb 97.7 0.026 5.5E-07 49.0 21.4 180 156-338 47-247 (307)
355 KOG1832 HIV-1 Vpr-binding prot 97.7 3.2E-05 6.9E-10 72.9 3.6 160 169-339 1094-1261(1516)
356 KOG4640 Anaphase-promoting com 97.7 0.00024 5.2E-09 64.7 8.8 93 216-313 22-115 (665)
357 PF05096 Glu_cyclase_2: Glutam 97.6 0.027 5.8E-07 47.0 24.8 179 88-279 47-251 (264)
358 KOG3621 WD40 repeat-containing 97.6 0.00042 9.2E-09 63.9 9.8 115 216-334 35-155 (726)
359 smart00320 WD40 WD40 repeats. 97.6 0.00019 4.1E-09 40.2 5.2 37 250-287 4-40 (40)
360 PF06977 SdiA-regulated: SdiA- 97.6 0.03 6.5E-07 46.9 25.1 190 85-286 21-247 (248)
361 KOG4499 Ca2+-binding protein R 97.6 0.026 5.6E-07 45.7 18.6 132 175-313 108-263 (310)
362 PF08596 Lgl_C: Lethal giant l 97.6 0.051 1.1E-06 49.0 23.5 235 87-342 3-299 (395)
363 KOG3621 WD40 repeat-containing 97.6 0.011 2.3E-07 55.1 18.0 119 78-203 26-155 (726)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.075 1.6E-06 50.1 23.7 235 99-339 122-496 (527)
365 cd00216 PQQ_DH Dehydrogenases 97.5 0.043 9.3E-07 51.4 22.1 191 96-298 61-328 (488)
366 KOG3617 WD40 and TPR repeat-co 97.5 0.00031 6.8E-09 66.1 7.6 118 218-339 19-137 (1416)
367 KOG2066 Vacuolar assembly/sort 97.5 0.01 2.2E-07 56.1 17.2 125 80-215 53-200 (846)
368 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.066 1.4E-06 48.3 24.0 80 258-339 307-404 (415)
369 KOG2395 Protein involved in va 97.5 0.0025 5.5E-08 57.2 12.4 137 141-288 346-499 (644)
370 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.051 1.1E-06 44.7 19.8 32 93-124 101-133 (354)
371 KOG2079 Vacuolar assembly/sort 97.4 0.00099 2.2E-08 64.5 9.6 99 235-336 105-206 (1206)
372 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.021 4.6E-07 40.6 13.8 91 142-242 16-109 (111)
373 KOG2395 Protein involved in va 97.4 0.026 5.7E-07 51.0 17.4 133 194-333 356-500 (644)
374 PRK13616 lipoprotein LpqB; Pro 97.4 0.014 3E-07 55.5 16.7 154 176-338 350-530 (591)
375 PF00780 CNH: CNH domain; Int 97.3 0.086 1.9E-06 45.3 24.5 218 95-339 5-261 (275)
376 KOG1897 Damage-specific DNA bi 97.3 0.22 4.7E-06 48.8 23.8 227 98-334 685-943 (1096)
377 PRK10115 protease 2; Provision 97.2 0.24 5.2E-06 48.5 29.5 239 87-336 128-397 (686)
378 PF02897 Peptidase_S9_N: Proly 97.2 0.15 3.2E-06 46.8 21.6 198 132-333 126-357 (414)
379 KOG1008 Uncharacterized conser 97.0 9.5E-05 2.1E-09 67.4 -1.3 162 79-246 96-274 (783)
380 COG3204 Uncharacterized protei 97.0 0.16 3.5E-06 42.8 18.1 180 86-274 86-299 (316)
381 PF12894 Apc4_WD40: Anaphase-p 97.0 0.003 6.6E-08 37.5 5.4 34 303-337 11-44 (47)
382 PRK13616 lipoprotein LpqB; Pro 96.9 0.18 3.9E-06 48.2 19.2 186 86-281 350-561 (591)
383 PF05096 Glu_cyclase_2: Glutam 96.9 0.21 4.5E-06 41.9 25.8 190 122-322 37-249 (264)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.38 8.2E-06 45.5 20.9 187 99-294 71-338 (527)
385 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0055 1.2E-07 36.4 5.4 35 258-294 11-45 (47)
386 PF14583 Pectate_lyase22: Olig 96.7 0.43 9.4E-06 42.3 26.7 240 91-335 86-383 (386)
387 COG3490 Uncharacterized protei 96.6 0.2 4.3E-06 42.0 14.8 156 164-321 56-243 (366)
388 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.16 3.5E-06 36.2 14.4 96 222-328 10-109 (111)
389 PF08596 Lgl_C: Lethal giant l 96.5 0.14 3E-06 46.3 14.3 80 252-333 80-173 (395)
390 KOG2444 WD40 repeat protein [G 96.4 0.015 3.2E-07 46.8 7.0 101 235-338 76-182 (238)
391 COG3823 Glutamine cyclotransfe 96.3 0.15 3.3E-06 40.6 12.0 103 96-206 55-162 (262)
392 PF10647 Gmad1: Lipoprotein Lp 96.3 0.4 8.7E-06 40.6 15.7 120 216-338 25-149 (253)
393 PRK10115 protease 2; Provision 96.2 1.4 3E-05 43.3 25.2 200 130-333 127-344 (686)
394 COG5167 VID27 Protein involved 96.2 0.23 4.9E-06 45.1 13.9 144 185-337 477-636 (776)
395 PF10168 Nup88: Nuclear pore c 96.2 0.68 1.5E-05 45.3 18.4 90 87-204 86-181 (717)
396 KOG2079 Vacuolar assembly/sort 96.2 0.35 7.5E-06 47.9 15.9 100 95-201 97-202 (1206)
397 PHA02713 hypothetical protein; 96.1 1.4 3E-05 42.2 21.7 67 269-340 463-540 (557)
398 KOG4499 Ca2+-binding protein R 95.9 0.78 1.7E-05 37.5 14.2 131 85-224 108-263 (310)
399 PF12234 Rav1p_C: RAVE protein 95.7 0.21 4.5E-06 47.5 12.1 105 92-201 36-155 (631)
400 PF15390 DUF4613: Domain of un 95.7 1.8 3.9E-05 40.4 21.8 111 85-201 56-185 (671)
401 PF05694 SBP56: 56kDa selenium 95.7 1.6 3.4E-05 39.5 18.3 153 94-248 138-343 (461)
402 KOG3630 Nuclear pore complex, 95.6 0.17 3.6E-06 50.3 11.3 142 175-321 100-261 (1405)
403 PF15390 DUF4613: Domain of un 95.6 0.39 8.4E-06 44.5 12.9 148 175-333 19-186 (671)
404 KOG1897 Damage-specific DNA bi 95.5 2.9 6.3E-05 41.5 20.5 214 108-330 752-1001(1096)
405 PF08728 CRT10: CRT10; InterP 95.5 0.61 1.3E-05 44.9 14.5 114 217-333 103-246 (717)
406 KOG1916 Nuclear protein, conta 95.5 0.019 4.2E-07 55.1 4.6 155 174-333 131-323 (1283)
407 PF14870 PSII_BNR: Photosynthe 95.4 1.6 3.5E-05 37.8 27.6 232 85-336 16-263 (302)
408 TIGR03074 PQQ_membr_DH membran 95.4 3.2 7E-05 41.1 23.0 140 156-297 270-485 (764)
409 PF10168 Nup88: Nuclear pore c 95.3 0.37 8E-06 47.0 12.9 76 259-336 85-182 (717)
410 TIGR02604 Piru_Ver_Nterm putat 95.1 1.6 3.5E-05 39.3 15.7 138 176-322 14-202 (367)
411 PF10647 Gmad1: Lipoprotein Lp 95.1 1.8 3.9E-05 36.7 19.9 145 131-281 25-188 (253)
412 PF10313 DUF2415: Uncharacteri 95.1 0.13 2.9E-06 29.6 5.5 31 259-290 1-34 (43)
413 PF12234 Rav1p_C: RAVE protein 95.1 1.5 3.2E-05 42.0 15.5 96 236-334 48-157 (631)
414 COG3823 Glutamine cyclotransfe 95.0 1.6 3.4E-05 35.1 15.4 175 133-321 49-247 (262)
415 KOG2280 Vacuolar assembly/sort 94.9 3.1 6.6E-05 40.0 16.6 194 108-314 66-270 (829)
416 COG3204 Uncharacterized protei 94.8 2.2 4.7E-05 36.3 19.5 193 127-330 83-309 (316)
417 PF07995 GSDH: Glucose / Sorbo 94.8 2.7 5.8E-05 37.3 26.4 236 87-328 3-330 (331)
418 PF14761 HPS3_N: Hermansky-Pud 94.7 1.9 4E-05 35.0 15.9 150 178-333 20-214 (215)
419 PF10313 DUF2415: Uncharacteri 94.7 0.14 3.1E-06 29.4 4.9 31 304-334 1-34 (43)
420 KOG1900 Nuclear pore complex, 94.6 0.78 1.7E-05 46.6 12.9 156 174-335 77-274 (1311)
421 KOG2444 WD40 repeat protein [G 94.2 0.18 3.9E-06 40.8 6.4 100 97-203 70-178 (238)
422 PF07569 Hira: TUP1-like enhan 94.2 0.38 8.3E-06 39.6 8.5 69 266-336 18-98 (219)
423 COG5167 VID27 Protein involved 94.1 1.5 3.3E-05 40.1 12.5 137 141-289 480-632 (776)
424 PHA02713 hypothetical protein; 94.1 5.8 0.00013 38.0 17.7 25 269-294 512-538 (557)
425 TIGR03118 PEPCTERM_chp_1 conse 93.9 3.7 8.1E-05 35.2 20.3 204 128-340 21-286 (336)
426 KOG2280 Vacuolar assembly/sort 93.6 3.6 7.8E-05 39.6 14.4 172 156-338 64-251 (829)
427 COG5276 Uncharacterized conser 93.6 4.2 9.1E-05 34.7 24.0 225 93-333 134-369 (370)
428 COG4880 Secreted protein conta 93.5 2.3 5E-05 38.0 12.2 168 156-332 406-591 (603)
429 PF07569 Hira: TUP1-like enhan 93.4 0.63 1.4E-05 38.4 8.4 65 132-203 15-96 (219)
430 PF10395 Utp8: Utp8 family; I 93.3 8 0.00017 37.2 25.6 160 171-336 125-308 (670)
431 PF14870 PSII_BNR: Photosynthe 93.3 5.1 0.00011 34.8 27.2 149 174-330 143-301 (302)
432 COG5276 Uncharacterized conser 93.0 5.2 0.00011 34.1 21.8 193 128-336 85-288 (370)
433 PF14761 HPS3_N: Hermansky-Pud 93.0 4.2 9E-05 33.0 16.5 51 134-191 22-75 (215)
434 PF05935 Arylsulfotrans: Aryls 92.9 8.1 0.00018 36.2 16.4 135 194-336 128-304 (477)
435 KOG4441 Proteins containing BT 92.8 9.5 0.00021 36.6 16.7 175 156-339 301-505 (571)
436 KOG2377 Uncharacterized conser 92.8 7.4 0.00016 35.3 16.3 139 89-232 26-171 (657)
437 KOG4441 Proteins containing BT 92.6 10 0.00022 36.4 21.5 235 95-339 283-552 (571)
438 COG1770 PtrB Protease II [Amin 92.4 11 0.00023 36.2 24.4 240 87-337 130-400 (682)
439 PF03022 MRJP: Major royal jel 92.4 6.8 0.00015 33.9 24.3 164 156-321 34-253 (287)
440 TIGR02604 Piru_Ver_Nterm putat 92.3 8.3 0.00018 34.7 17.4 148 131-280 15-205 (367)
441 KOG2247 WD40 repeat-containing 92.0 0.022 4.8E-07 51.0 -1.8 136 128-273 33-174 (615)
442 PF05935 Arylsulfotrans: Aryls 91.9 11 0.00024 35.4 18.4 152 139-299 113-311 (477)
443 PF14655 RAB3GAP2_N: Rab3 GTPa 91.7 6.3 0.00014 35.9 13.2 38 82-119 304-342 (415)
444 TIGR03118 PEPCTERM_chp_1 conse 91.7 8.1 0.00018 33.3 22.5 220 87-313 24-307 (336)
445 KOG1916 Nuclear protein, conta 91.6 0.18 3.9E-06 48.8 3.4 104 79-190 126-239 (1283)
446 KOG2377 Uncharacterized conser 91.5 3 6.4E-05 37.7 10.5 106 78-191 59-169 (657)
447 PF07995 GSDH: Glucose / Sorbo 91.3 10 0.00022 33.6 14.4 101 177-278 3-133 (331)
448 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.6 3.5E-05 24.7 6.1 32 268-300 1-33 (42)
449 PF08801 Nucleoporin_N: Nup133 91.0 13 0.00027 34.3 15.1 31 304-334 190-220 (422)
450 PF03022 MRJP: Major royal jel 90.8 10 0.00022 32.8 18.9 153 178-335 3-217 (287)
451 PF12657 TFIIIC_delta: Transcr 90.7 2.9 6.2E-05 33.1 9.1 31 259-290 86-122 (173)
452 KOG3630 Nuclear pore complex, 90.7 2.8 6.2E-05 42.2 10.4 116 156-275 124-260 (1405)
453 PF11715 Nup160: Nucleoporin N 90.0 1.7 3.8E-05 41.5 8.6 33 305-337 216-252 (547)
454 PF09826 Beta_propel: Beta pro 89.5 19 0.00042 34.1 23.6 188 138-335 281-520 (521)
455 KOG1983 Tomosyn and related SN 89.3 10 0.00022 39.1 13.6 73 256-337 196-268 (993)
456 KOG1898 Splicing factor 3b, su 89.3 27 0.00058 35.4 18.9 170 157-334 854-1049(1205)
457 PF12657 TFIIIC_delta: Transcr 89.2 3.5 7.5E-05 32.6 8.5 30 305-334 87-122 (173)
458 KOG4460 Nuclear pore complex, 87.9 6 0.00013 36.6 9.7 77 260-338 105-203 (741)
459 PHA03098 kelch-like protein; P 87.4 27 0.0006 33.3 20.0 64 269-337 437-515 (534)
460 PF07676 PD40: WD40-like Beta 87.0 2.6 5.6E-05 23.5 4.8 28 84-111 7-38 (39)
461 TIGR03074 PQQ_membr_DH membran 86.9 36 0.00077 34.1 22.8 58 283-340 416-484 (764)
462 KOG3616 Selective LIM binding 86.8 20 0.00043 35.0 12.7 33 85-117 14-47 (1636)
463 PF08728 CRT10: CRT10; InterP 86.4 35 0.00075 33.5 15.8 144 97-246 49-245 (717)
464 PRK13684 Ycf48-like protein; P 86.4 23 0.0005 31.4 25.1 148 175-331 172-329 (334)
465 PF07676 PD40: WD40-like Beta 86.0 4.2 9.2E-05 22.6 5.5 30 256-286 6-38 (39)
466 COG4590 ABC-type uncharacteriz 85.8 4.2 9E-05 36.8 7.5 157 174-338 219-391 (733)
467 PF03088 Str_synth: Strictosid 85.5 9.7 0.00021 26.2 8.8 42 276-321 33-74 (89)
468 COG5290 IkappaB kinase complex 84.2 34 0.00074 33.7 12.9 93 218-316 250-349 (1243)
469 PHA03098 kelch-like protein; P 83.5 42 0.00092 32.0 19.9 107 95-205 293-417 (534)
470 COG4257 Vgb Streptogramin lyas 83.2 28 0.0006 29.7 16.3 191 133-335 65-264 (353)
471 PF07250 Glyoxal_oxid_N: Glyox 82.9 27 0.00058 29.3 10.9 137 157-299 47-207 (243)
472 KOG1520 Predicted alkaloid syn 82.9 34 0.00074 30.5 12.3 111 176-286 115-247 (376)
473 TIGR03606 non_repeat_PQQ dehyd 82.8 35 0.00075 31.7 12.4 102 179-280 33-167 (454)
474 PF10214 Rrn6: RNA polymerase 82.7 57 0.0012 32.9 17.4 112 86-203 146-277 (765)
475 KOG1898 Splicing factor 3b, su 82.6 50 0.0011 33.7 13.7 99 196-296 855-969 (1205)
476 PF14269 Arylsulfotran_2: Aryl 82.3 33 0.00071 29.9 17.1 70 261-332 146-219 (299)
477 PF11715 Nup160: Nucleoporin N 80.9 4.4 9.5E-05 38.8 6.3 38 260-298 216-257 (547)
478 COG5308 NUP170 Nuclear pore co 80.5 9.5 0.00021 37.7 8.1 141 191-337 99-279 (1263)
479 COG5290 IkappaB kinase complex 80.4 30 0.00064 34.1 11.1 140 90-233 206-355 (1243)
480 KOG3611 Semaphorins [Signal tr 79.8 29 0.00064 34.3 11.4 72 258-329 407-489 (737)
481 KOG1900 Nuclear pore complex, 79.1 46 0.00099 34.8 12.5 130 156-290 99-273 (1311)
482 PRK13684 Ycf48-like protein; P 79.0 46 0.001 29.5 24.9 233 85-336 45-290 (334)
483 PHA02790 Kelch-like protein; P 78.9 58 0.0013 30.6 17.2 103 96-205 271-387 (480)
484 TIGR02171 Fb_sc_TIGR02171 Fibr 78.3 15 0.00032 36.7 8.8 78 239-318 329-413 (912)
485 KOG2247 WD40 repeat-containing 77.6 0.56 1.2E-05 42.5 -0.7 139 179-325 38-180 (615)
486 smart00564 PQQ beta-propeller 77.3 6.2 0.00013 20.8 3.8 24 272-296 8-31 (33)
487 TIGR02276 beta_rpt_yvtn 40-res 76.6 11 0.00024 21.1 5.9 28 156-183 14-41 (42)
488 PF02333 Phytase: Phytase; In 75.8 62 0.0013 29.3 22.4 185 140-335 67-292 (381)
489 PF10214 Rrn6: RNA polymerase 75.1 97 0.0021 31.2 21.4 117 214-336 145-279 (765)
490 PF02333 Phytase: Phytase; In 74.8 65 0.0014 29.1 18.9 135 192-333 76-237 (381)
491 PF01731 Arylesterase: Arylest 74.3 16 0.00035 24.9 5.8 30 305-334 55-85 (86)
492 PF01436 NHL: NHL repeat; Int 73.4 11 0.00023 19.3 4.3 25 306-330 4-28 (28)
493 PF01011 PQQ: PQQ enzyme repea 72.5 13 0.00027 20.6 4.3 28 272-300 2-29 (38)
494 PF14781 BBS2_N: Ciliary BBSom 72.5 38 0.00082 25.4 11.8 113 132-252 1-130 (136)
495 PLN00033 photosystem II stabil 72.0 80 0.0017 28.9 27.2 144 177-330 240-396 (398)
496 PF09826 Beta_propel: Beta pro 71.2 98 0.0021 29.5 20.2 103 95-199 20-144 (521)
497 PF13449 Phytase-like: Esteras 71.1 74 0.0016 28.1 12.2 61 260-322 86-165 (326)
498 PF13117 Cag12: Cag pathogenic 69.9 2.2 4.9E-05 30.7 0.9 16 1-16 4-19 (113)
499 PHA02790 Kelch-like protein; P 68.8 1.1E+02 0.0023 28.9 19.3 62 269-336 407-473 (480)
500 PF11725 AvrE: Pathogenicity f 68.7 1.8E+02 0.004 31.7 15.7 147 174-336 361-519 (1774)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-42 Score=281.04 Aligned_cols=252 Identities=15% Similarity=0.261 Sum_probs=222.3
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
.+...+|.++|.|++|+|+|+.|++|+ |.++|+||+++.... .... +|...|.+++|+|++..+++++.| |
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~~d-----g 179 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGSKD-----G 179 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccccC-----C
Confidence 355679999999999999999999999 999999999887666 4454 999999999999999999999998 9
Q ss_pred cEEEEeCCCCcEEE-EEe-cCCceeEEEEee-----CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCC
Q 017642 157 KVMIWDDHQSRCIG-ELS-FRSEVRSVKLRR-----DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (368)
Q Consensus 157 ~i~vwd~~~~~~~~-~~~-~~~~v~~~~~~~-----~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (368)
+|++||.++|+++. .+. |...|++++|.| ..+.++ .||.|+|||+..++++..+.+|..+|+|+.|--+|
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG 259 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc
Confidence 99999999997664 455 999999999987 456666 59999999999999999999999999999987666
Q ss_pred CeEEEEeecCCCCeEEEEecCc----------------------------------------------------------
Q 017642 227 GSLVLVCPGLQKGQVRVEHYAS---------------------------------------------------------- 248 (368)
Q Consensus 227 ~~~~l~~~g~~dg~i~i~~~~~---------------------------------------------------------- 248 (368)
++++|+.|++|++|+...
T Consensus 260 ----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 260 ----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred ----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 445699999999986531
Q ss_pred ----------------------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642 249 ----------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 249 ----------------------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
+++..+.+|..-|+.+.|+||++++|+++-|.. |++||.++|+.+..|++ |-+.|
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~V 412 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAV 412 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--cccee
Confidence 112245578888999999999999999999999 99999999999999999 88999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
+.++|+.|.++|++|+.|.++++|++++.+-.-+..++
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence 99999999999999999999999999999988877765
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.5e-39 Score=267.11 Aligned_cols=242 Identities=18% Similarity=0.159 Sum_probs=221.3
Q ss_pred CCcccccCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642 76 PAESTSSSPPPTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (368)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~~--g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~ 152 (368)
.......+|...|.++.|+|. +..||+|+ |+.+++|+++..... ..+. +|...|..++|+|++.++.+++.|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~TasfD-- 282 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTASFD-- 282 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeecccc--
Confidence 455677899999999999997 66899999 999999999876555 5565 889999999999999999999998
Q ss_pred CCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642 153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 153 ~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (368)
.+-++||++++..+...+ |...|.+++|.+||.+++ .|..-+|||+++|+++..+.+|..+|..++|+|+|-.
T Consensus 283 ---~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 283 ---STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred ---cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE
Confidence 999999999998877777 999999999999999999 5889999999999999999999999999999999953
Q ss_pred EEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642 229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
+| +|+.|++++||+... ..+.++.+|..-|+.|.|+| .|.+|++++.|++ ++||...++.+++.+.+ |.+.|
T Consensus 360 --lA-Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV 433 (459)
T KOG0272|consen 360 --LA-TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKV 433 (459)
T ss_pred --Ee-ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--Cccce
Confidence 44 589999999998876 55778899999999999998 7789999999999 99999999999999999 89999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
.++++++|+.++++++.|++|++|.
T Consensus 434 ~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 434 ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=264.78 Aligned_cols=250 Identities=16% Similarity=0.187 Sum_probs=228.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCCCcEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~~~i~ 159 (368)
+-+.+|..+.|+.|++.|++|+ ++.++||+...... ...|. +|...+.++.|+|. ...+++++.| |+++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~D-----gtvk 244 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLR-GHTSRVGAAVFHPVDSDLNLATASAD-----GTVK 244 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEe-ccccceeeEEEccCCCccceeeeccC-----Ccee
Confidence 4567899999999999999999 99999999876643 36676 99999999999986 6789999998 9999
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
+|++.+..++..+. |...|..++|+|+|++++ .|.+-++||++++..+...++|...|.+++|.+||. |+++|
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~tG 321 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAATG 321 (459)
T ss_pred eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eeecc
Confidence 99999999999998 999999999999999999 699999999999999888899999999999999997 56679
Q ss_pred CCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec-
Q 017642 236 LQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS- 313 (368)
Q Consensus 236 ~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp- 313 (368)
+.|..-+||+. +++++..+.+|..+|.+|+|+|+|..||||+.|++ ++|||++..+.++.+.. |..-|..|.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEeccc
Confidence 99999999775 56888899999999999999999999999999999 99999999999999988 888999999998
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCC
Q 017642 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRST 346 (368)
Q Consensus 314 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 346 (368)
.|.+|++++.|++++||.-.+.+..+...++..
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~ 431 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG 431 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCcc
Confidence 788999999999999999999999988887743
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-37 Score=251.80 Aligned_cols=244 Identities=18% Similarity=0.255 Sum_probs=209.1
Q ss_pred CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-----CeEEEEecC
Q 017642 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-----NILALVGGG 148 (368)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~ 148 (368)
.++..+-.+|...|.|++|+|||+.||+|+ |+.|++||-.+++... +.+. +|...|.+++|.| ....+++++
T Consensus 147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~-gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALR-GHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-cccc-CcccceeEEeecccccCCCccceeccc
Confidence 344556789999999999999999999999 8889999988776653 4554 8999999999964 566899999
Q ss_pred CCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEe--------------
Q 017642 149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE-------------- 211 (368)
Q Consensus 149 ~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~-------------- 211 (368)
.| |.|+|||+..+.++..+. |...|+|++|-.+|.+.. .|++|++|+...|++.+.++
T Consensus 225 kD-----g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 225 KD-----GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred CC-----CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence 98 999999999999999988 999999999988876665 58999999887765333333
Q ss_pred -----------------------------------------------------------------ccCCCeeEEEEecCC
Q 017642 212 -----------------------------------------------------------------TIANPKGLCAVSQGV 226 (368)
Q Consensus 212 -----------------------------------------------------------------~~~~~v~~~~~~~~~ 226 (368)
+|...|+.+.|+||+
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc
Confidence 444556677888888
Q ss_pred CeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642 227 GSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (368)
Q Consensus 227 ~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (368)
+. +| +++-|..|++|+-. ++.+..+.+|-..|+.++|+.|.++|++|+.|.+ +++||+++.+....+.+ |...
T Consensus 380 r~--IA-SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DE 453 (480)
T KOG0271|consen 380 RY--IA-SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADE 453 (480)
T ss_pred cE--EE-EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCce
Confidence 73 55 47889999997754 5777889999999999999999999999999999 99999999999999998 7889
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 306 IYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 306 v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
|.++.|+|||+.+++|+.|+.+++|.
T Consensus 454 Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999995
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.7e-36 Score=232.30 Aligned_cols=253 Identities=22% Similarity=0.290 Sum_probs=218.0
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
.....+..|+.+.+.||++.||+++...||+||+++........++ +|...|..+.|..++...+++++| |+++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseD-----gt~k 108 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSED-----GTVK 108 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCC-----ceEE
Confidence 3344566899999999999999999999999999988876667786 888999999999999999999998 9999
Q ss_pred EEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeec
Q 017642 160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 160 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
|||++...+.+.+++..+|+++..+|+...++ .+|.|++||+.+..+.+.+ ......+.++.+.|||.. ++. +
T Consensus 109 IWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm--l~a-~ 185 (311)
T KOG0315|consen 109 IWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM--LAA-A 185 (311)
T ss_pred EEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE--EEE-e
Confidence 99999988889999999999999999866555 5799999999887666555 344567899999999986 332 4
Q ss_pred CCCCeEEEEecCc-------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEE
Q 017642 236 LQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIY 307 (368)
Q Consensus 236 ~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~ 307 (368)
...|..++|+... .++..++.|.+.|..+.+|||+++||+++.|.+ ++||+.++. +.-..+.+ |...++
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvW 262 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVW 262 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEE
Confidence 5789999998654 345567899999999999999999999999999 999999887 44445555 778999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
+.+||.||+||++|+.|+.+++|++..+++....+++
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 9999999999999999999999999999988776665
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-36 Score=270.01 Aligned_cols=243 Identities=18% Similarity=0.273 Sum_probs=218.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-----------------------------ceEEEcccCCceeEE
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-----------------------------IFRRDFERGGGIGVV 133 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-----------------------------~~~~~~~~~~~~~~~ 133 (368)
-...++|..|++|+++||.|- |..|++|.+.+.+. ...+.+. +|...|.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVy 455 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVY 455 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCcee
Confidence 345899999999999999998 77899999874210 0112233 8899999
Q ss_pred EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEE
Q 017642 134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQ 209 (368)
Q Consensus 134 ~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~ 209 (368)
...|+|+..++++++.| +++|+|.+.+..++..++ |..+|+.+.|+|.|.+++ .|++.++|.....+.++.
T Consensus 456 g~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred eeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 99999999999999998 999999999999999998 999999999999999999 599999999998999999
Q ss_pred EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (368)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~ 288 (368)
+.+|...|.|+.|+|+..+ ++ +|+.|.++++|+.. +..++.+.+|.++|.+++|+|+|++|++|++||. |+|||+
T Consensus 531 faghlsDV~cv~FHPNs~Y--~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl 606 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNY--VA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDL 606 (707)
T ss_pred hcccccccceEEECCcccc--cc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEc
Confidence 9999999999999999984 55 48999999998765 5778889999999999999999999999999999 999999
Q ss_pred CCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.+++.+..+.+ |.+.|.+|.|+.||..||+|+.|.+|++||+.+....
T Consensus 607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999998 7899999999999999999999999999999876554
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-34 Score=228.87 Aligned_cols=253 Identities=14% Similarity=0.210 Sum_probs=215.4
Q ss_pred ccccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcce---EEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~ 153 (368)
.....|++.|+.++..+.+ ..+.+++ |..+.+|++......+ .+.+. +|...+..+..++++.+.++++.|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD--- 84 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWD--- 84 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEecccc---
Confidence 3567899999999999875 4667777 8889999997654433 56676 899999999999999999999998
Q ss_pred CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEecc--CCCeeEEEEecCCC
Q 017642 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVG 227 (368)
Q Consensus 154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 227 (368)
+.+++||+.+++..+.|. |...|.+++|++|.+.++ .|.+|++|++... +..++... .+.|.++.|+|+..
T Consensus 85 --~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 85 --GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred --ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCC
Confidence 999999999999999998 999999999999999998 5999999998654 44444333 78899999999986
Q ss_pred eEEEEeecCCCCeEEEEecCccee-eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642 228 SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
..+++. ++.|++|++|+.....+ ..+.+|.+.++.++++|||.++++|+.||. +.+||++.++.++.+. +...|
T Consensus 162 ~p~Ivs-~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~v 236 (315)
T KOG0279|consen 162 NPIIVS-ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDIV 236 (315)
T ss_pred CcEEEE-ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCeE
Confidence 666665 78999999999887554 457899999999999999999999999999 9999999999988887 56799
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
.+++|+|+.-+|+.+.. ..|+|||++++....+..-.
T Consensus 237 ~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred eeEEecCCceeEeeccC-CceEEEeccchhhhhhcccc
Confidence 99999999877776654 45999999999888776543
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=230.20 Aligned_cols=255 Identities=15% Similarity=0.131 Sum_probs=224.7
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
.+..+|.+.|+++.|++|.++|++++ |+.+.|||.-+........ -....|+.++|+|.+.++++++-| +.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAcGGLd-----N~ 120 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVACGGLD-----NK 120 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEecCcC-----ce
Confidence 67789999999999999999999999 8889999987666553333 467889999999999999999998 99
Q ss_pred EEEEeCCCC------cEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec-CCC
Q 017642 158 VMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVG 227 (368)
Q Consensus 158 i~vwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 227 (368)
..||++.+. ...+++. |.+.+.++.|..|+.++. .|.++-+||+++++.+..|.+|.+.|.+++++| +++
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 999998854 3445566 999999999999998888 688999999999999999999999999999999 665
Q ss_pred eEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642 228 SLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
. ++ +|+-|+..++|+.. +..++.+.+|+..|++|.|.|+|.-+++|++|++ .++||++..+.+..+.......+|
T Consensus 201 t--Fv-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 201 T--FV-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred e--EE-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCc
Confidence 4 33 47889999997755 5778899999999999999999999999999999 999999999999888864455689
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS 345 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 345 (368)
++++||-.|++|.+|..|.++.+||.-+++..-...++.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe 315 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE 315 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC
Confidence 999999999999999999999999999988877766663
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.3e-34 Score=227.04 Aligned_cols=237 Identities=16% Similarity=0.202 Sum_probs=206.5
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCC--C--cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF--R--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
......|..++|+|.|+++|+|+ |+...||++... + ....+.+. +|...+.++.|-++..++.+.+ | .
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~~ilT~SG-D-----~ 166 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDNHILTGSG-D-----M 166 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcCCCceEecCC-C-----c
Confidence 34567899999999999999999 999999999754 2 23345565 8999999999988766655554 4 8
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
+..+||+++++.+..|. |.+.|.++.++| +++.++ .|+..++||++.+.+.++|.+|...|+.+.|.|+|.. +
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a--f 244 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA--F 244 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe--e
Confidence 99999999999999999 999999999999 888877 5999999999999999999999999999999999985 4
Q ss_pred EeecCCCCeEEEEecCc-ceeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642 232 VCPGLQKGQVRVEHYAS-KRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~-~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (368)
+ +|+.|++.++++... +.+..+.. -..+|++++|+-.|++|++|..|.+ +.+||.-.++.+..+.+ |...|.+
T Consensus 245 a-tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvSc 320 (343)
T KOG0286|consen 245 A-TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSC 320 (343)
T ss_pred e-ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEE
Confidence 4 499999999966555 44444432 3457999999999999999999999 99999999999999998 8999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEE
Q 017642 309 LAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 309 l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
+..+|||..|++|+.|.++|||.
T Consensus 321 l~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 321 LGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999994
No 10
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=8.9e-34 Score=228.88 Aligned_cols=270 Identities=59% Similarity=0.976 Sum_probs=238.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~ 166 (368)
...+++|+.|...+++|.|.+.+||++++.++...+.+. .....+..|.|..+.+++++|+..+.|..+.|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 455699999999999999999999999998776666665 4558889999999999999999999999999999998888
Q ss_pred cEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcC-CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe
Q 017642 167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (368)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~ 245 (368)
+++.++....+|.++.+.++...++..+.|+||... +.+.++.+....++-..+++.|..+..+||+.|-.-|.|.|-+
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 999999999999999999999888899999999997 6788888887777777899999988889999999999999944
Q ss_pred cCcce---eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642 246 YASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (368)
Q Consensus 246 ~~~~~---~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 322 (368)
..... ...+.+|...|.|++.+-+|.++|+++..|+.|||||..+|+.+++++.+.....|.+|+|||++.+|+++|
T Consensus 166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 44433 377899999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCeEEEEEccCCCCCCCCCCCCCCCCCccCCCcccccceeeeeeC
Q 017642 323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGEESIFIF 368 (368)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (368)
+.|+|+||.++......+ ..++++|...++|+||.
T Consensus 246 dKgTlHiF~l~~~~~~~~-----------~~SSl~~~~~~lpky~~ 280 (346)
T KOG2111|consen 246 DKGTLHIFSLRDTENTED-----------ESSSLSFKRLVLPKYFS 280 (346)
T ss_pred CCCeEEEEEeecCCCCcc-----------ccccccccccccchhcc
Confidence 999999999988665432 11667777778888763
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-34 Score=225.27 Aligned_cols=243 Identities=14% Similarity=0.256 Sum_probs=204.7
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
.....+|...|..+..++||++.++++ |+.+++||+.+++.. +.|. +|...+++++++++...+++++.| +
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t--~~f~-GH~~dVlsva~s~dn~qivSGSrD-----k 127 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST--RRFV-GHTKDVLSVAFSTDNRQIVSGSRD-----K 127 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE--EEEE-ecCCceEEEEecCCCceeecCCCc-----c
Confidence 455678999999999999999999999 999999999987554 5565 999999999999999999999998 9
Q ss_pred cEEEEeCCCCcEEEEEe---cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642 157 KVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (368)
+|++||+.. .+..++. +.+.|.+++|+|+ ..+++ .|++|++||+++.+....+.+|.+-++.++++|||.
T Consensus 128 Tiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs- 205 (315)
T KOG0279|consen 128 TIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS- 205 (315)
T ss_pred eeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-
Confidence 999999654 4555554 3789999999998 55666 699999999999999999999999999999999998
Q ss_pred EEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-------
Q 017642 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA------- 301 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~------- 301 (368)
+.+ +|+.||.+.+|+.+.+.-.....|...|.+++|+|+.-.|+.+... . |+|||+.++.++.+++...
T Consensus 206 -lca-sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-s-IkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 206 -LCA-SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-S-IKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred -EEe-cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC-c-eEEEeccchhhhhhcccccccccccc
Confidence 244 5899999999998876665666788899999999987666655544 4 9999999998887766421
Q ss_pred CcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
......+++|++||..|++|..|+.|++|.+..
T Consensus 282 ~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 122456789999999999999999999999853
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=231.81 Aligned_cols=250 Identities=18% Similarity=0.243 Sum_probs=221.2
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
....+|...|+.+-|+|+-.++++++ |.+|++||..+++.. ..+. +|...+.+++|+..+..+++++.| -.
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~Lr-GHt~sv~di~~~a~Gk~l~tcSsD-----l~ 173 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLR-GHTDSVFDISFDASGKYLATCSSD-----LS 173 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhh-ccccceeEEEEecCccEEEecCCc-----cc
Confidence 34456999999999999999999998 778999999887774 6676 888889999999999999999998 77
Q ss_pred EEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 158 VMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 158 i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
+++||..+ .++++.+. |...|.+++|-|.|.+++ .|.+|+.|++.+|-++.++.+|...+..+..+.||. +++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i~A 251 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--IIA 251 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--EEE
Confidence 99999876 45565555 999999999999999888 599999999999999999999999999998888885 455
Q ss_pred eecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCC---------------CCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642 233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQD---------------GQLLATSSTKGTLVRIFNTLDGTLLQE 296 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~---------------g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (368)
+++.|.++++|....+ +...+..|+.+|.|++|.|. +.++++++.|++ |++||+.++.++.+
T Consensus 252 -s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~t 329 (406)
T KOG0295|consen 252 -SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFT 329 (406)
T ss_pred -ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEE
Confidence 5889999999987764 55678899999999999763 359999999999 99999999999999
Q ss_pred eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
+.+ |...|..++|+|.|+||+++.+|+++++||+++++.....+
T Consensus 330 L~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 330 LVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred Eec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 998 88999999999999999999999999999999998776555
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-33 Score=236.28 Aligned_cols=245 Identities=18% Similarity=0.285 Sum_probs=217.2
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~ 163 (368)
...|++++|+.+|.+||+|. ++.++||+... ... ..+. .|..+|+++.|+..+.++++++.| +++.+||.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~--~tl~-~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd~ 305 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLI--STLG-QHKGPIFSLKWNKKGTYILSGGVD-----GTTILWDA 305 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhh--hhhh-ccCCceEEEEEcCCCCEEEeccCC-----ccEEEEec
Confidence 46899999999999999999 77799999653 222 3453 899999999999999999999998 99999999
Q ss_pred CCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642 164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (368)
Q Consensus 164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~ 240 (368)
.+++..+.+. |..+-.++.|-.+..+.. .|+.|+|+.+...+++.++.+|.++|.++.|.|.+. +|+ +++.|++
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLa-S~SdD~T 382 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLA-SCSDDGT 382 (524)
T ss_pred cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEE-EecCCCe
Confidence 9999999998 666668899998888887 699999999988889999999999999999999987 344 4789999
Q ss_pred EEEEec-CcceeeeeeccCcceEEEEECCCC---------CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 241 VRVEHY-ASKRTKFIMAHDSRIACFALTQDG---------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 241 i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g---------~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
++||.. .......+.+|...|..+.|+|+| ..|++++.|++ |++||+..+.++..|.. |..+|.+++
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEEE
Confidence 999984 456777899999999999999965 37999999999 99999999999999987 889999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
|+|+|+++|+|+.||.|.+|++++++-.......
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 9999999999999999999999999887655543
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=243.99 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=218.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v 160 (368)
..|...|.++.|+++|++|++++ ++.+++|+...........+. +|...|.+++|++++.++++++.| ++|++
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D-----~tiri 229 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDD-----KTLRI 229 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCC-----ceEEE
Confidence 44578999999999999999998 888999999655522234443 899999999999999999999998 99999
Q ss_pred EeC-CCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 161 WDD-HQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 161 wd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
||+ ..+..++++. |...|++++|+|++++++ .|++|++||+++++++..+.+|...|..++|++++.. +++ +
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~--l~s-~ 306 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL--LVS-A 306 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE--EEE-c
Confidence 999 5568889998 999999999999998777 6999999999999999999999999999999999985 443 5
Q ss_pred CCCCeEEEEecCcce---eeeeeccCcc--eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc-ccEEEE
Q 017642 236 LQKGQVRVEHYASKR---TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSL 309 (368)
Q Consensus 236 ~~dg~i~i~~~~~~~---~~~~~~~~~~--i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l 309 (368)
+.|+.|++|+..... ...+..+... ++++.|+|++++|++++.|+. +++||+..+..+..+..+... ..+.+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence 789999999988766 4566666555 999999999999999999999 999999999999999884321 145556
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
..++.+.++++|+.|+.|++||+.++......+.+
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 66789999999999999999999998887777777
No 15
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-32 Score=209.78 Aligned_cols=249 Identities=15% Similarity=0.255 Sum_probs=210.1
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
...+...|.++|..+.|+-||+|.++++ |++|++|+...+ .+.+++. +|...+.+.+.+.+...+++++.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYs-ghG~EVlD~~~s~Dnskf~s~GgD----- 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYS-GHGHEVLDAALSSDNSKFASCGGD----- 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeec-CCCceeeeccccccccccccCCCC-----
Confidence 3455678999999999999999988877 999999996544 4447776 899999999999999999999988
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC--CeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
..+.+||+++|+.++.+. |.+.|+.++|+.+...++ .|..+++||.++ .++++.+....+.|.++.+....
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~he--- 157 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHE--- 157 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccE---
Confidence 999999999999999999 999999999999999888 599999999975 57788888888888888876443
Q ss_pred EEEeecCCCCeEEEEecCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642 230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (368)
++ +|+.||+++.++..... ..... ..+|+++.|++|++.++.++.|++ |++.|-.+|+.+..++++.....-..
T Consensus 158 -Iv-aGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 158 -IV-AGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred -EE-eeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeee
Confidence 34 38999999996655443 33333 448999999999999999999999 99999999999999999554445556
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 017642 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (368)
Q Consensus 309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 341 (368)
.+++.....+++|++||.|++||+.+.......
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeee
Confidence 777777889999999999999999887766443
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-32 Score=222.76 Aligned_cols=243 Identities=17% Similarity=0.286 Sum_probs=216.1
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
....+|++.|..|+|+..|++|++++ |-.+++||.+...... +.+ ++|...+.++.|-|.+..++++++| .+
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~-~gh~h~vS~V~f~P~gd~ilS~srD-----~t 216 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI-KSL-IGHEHGVSSVFFLPLGDHILSCSRD-----NT 216 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH-HHh-cCcccceeeEEEEecCCeeeecccc-----cc
Confidence 45678999999999999999999999 6669999988643332 223 3888889999999999999999998 99
Q ss_pred EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC------
Q 017642 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG------ 227 (368)
Q Consensus 158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------ 227 (368)
|+.|++.+|.++.++. |...|..++.+.||.+++ .|.+|++|-+.++++...+..|..++.+++|.|...
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 9999999999999999 999999999999999999 588999999999999999999999999999977431
Q ss_pred -------eEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642 228 -------SLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (368)
Q Consensus 228 -------~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (368)
..+++ +|+.|++|++|+... .++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++...+..
T Consensus 297 at~~~~~~~~l~-s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 297 ATGSTNGGQVLG-SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA 374 (406)
T ss_pred ccCCCCCccEEE-eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC
Confidence 12444 489999999988765 778889999999999999999999999999999 99999999999999987
Q ss_pred ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
|..-|++++|+.+..++++|+-|.++++|.-
T Consensus 375 --h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 7789999999999999999999999999964
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=213.09 Aligned_cols=249 Identities=17% Similarity=0.210 Sum_probs=211.7
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
.-...+|++.|+.+.|+|+|.+||+|+ |..|.+|++......+ ..+. +|...|+.+.|..++..+++++.| .
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~gtD-----k 112 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCGTD-----K 112 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEecCC-----c
Confidence 345679999999999999999999999 9999999975433332 3343 899999999999999999999998 9
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
+|+.||+++|++++.++ |..-|..+.-+.-|..++ .|+++++||+++..+++++. ...+++++.|...++..+
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~- 190 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVI- 190 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccccee-
Confidence 99999999999999999 899999998666677776 58999999999998888874 456788999998888633
Q ss_pred EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC----CceeEeeEeccCcc--
Q 017642 232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRA-- 304 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~----~~~~~~~~~~~~~~-- 304 (368)
+|.-|+.|++|+... .....+.+|...|+.|..+++|.++.+-+.|.+ +++||++- ..++..+.++.|.-
T Consensus 191 --sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 191 --SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred --eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence 477899999988754 667789999999999999999999999999999 99999974 34577787765544
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
....++|+|++..+.+|+.|+.+++||.....-.
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccEE
Confidence 4557789999999999999999999999875543
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.7e-31 Score=237.85 Aligned_cols=207 Identities=16% Similarity=0.252 Sum_probs=189.1
Q ss_pred CCCCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642 72 PLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (368)
Q Consensus 72 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 150 (368)
.....+.....+|.++|+.+.|+|+.++|++++ |.++|+|.+++...... +. +|...|+.+.|+|.+.++++++.|
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~--y~-GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI--YK-GHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEE--ec-CCCcceeeEEecCCceEEEecCCC
Confidence 334455566889999999999999999999999 78899999998877744 54 899999999999999999999998
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCC
Q 017642 151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (368)
++-++|......+.+.+. |-..|.|+.|+|+..+++ .|.+|++||+.+|..++.|.+|.++|.+++|+|+|
T Consensus 515 -----~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 515 -----QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred -----ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC
Confidence 999999999999999888 999999999999999999 69999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 227 GSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 227 ~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
.+ |++ |+.||.|.+|+... ..+..+.+|.+.|.+|.|+.+|.+||+|+.|.. |++||+..
T Consensus 590 r~--LaS-g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns-V~lWD~~~ 650 (707)
T KOG0263|consen 590 RY--LAS-GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS-VRLWDLTK 650 (707)
T ss_pred ce--Eee-cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe-EEEEEchh
Confidence 85 554 88999999999877 777889999999999999999999999999999 99999864
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-31 Score=216.72 Aligned_cols=247 Identities=18% Similarity=0.246 Sum_probs=220.3
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
-+.+..+|.+.|.|+++.|-.++|++|+ |++++|||+.+++.. ..+. +|...+..+++++...++++++.|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~ged----- 214 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAGED----- 214 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEecCC-----
Confidence 3467789999999999999999999999 999999999987776 4454 888999999999999999999998
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
+.|+.||++..+.++.+. |-..|.+++.+|.-..++ .|.+++|||+++...+..+.+|..+|..+.+.+-... +
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq--v 292 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ--V 292 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc--e
Confidence 999999999999999988 999999999999887777 6899999999999999999999999999998876654 3
Q ss_pred EeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 232 VCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
+ +|+.|++|++|+.. ++...++..|...+.+++.+|....+|+++.|. |+-|++..|+.+..+.+ |.+.|++++
T Consensus 293 i-t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~ 367 (460)
T KOG0285|consen 293 I-TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLS 367 (460)
T ss_pred E-EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeee
Confidence 3 48899999997765 577778899999999999999999999999986 89999999999999887 888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
...|| ++++|+++|.|.+||.+++-.-.
T Consensus 368 ~nsD~-v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 368 VNSDG-VLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred eccCc-eEEEcCCceEEEEEecCcCcccc
Confidence 98776 67789999999999999875543
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-30 Score=232.30 Aligned_cols=246 Identities=15% Similarity=0.246 Sum_probs=207.8
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
..+|...+++++++|||+++|+|+ |+.|+|||...+-+. .+|. .|...+..+.|...+..+++.+-| |+|+
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~--vTFt-eHts~Vt~v~f~~~g~~llssSLD-----GtVR 417 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF--VTFT-EHTSGVTAVQFTARGNVLLSSSLD-----GTVR 417 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE--EEec-cCCCceEEEEEEecCCEEEEeecC-----CeEE
Confidence 357999999999999999999999 777999997755554 6676 899999999999999999999998 9999
Q ss_pred EEeCCCCcEEEEEec--CCceeEEEEeeCccEEEe---C-CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 160 IWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVL---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 160 vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~---d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
.||+...+..+++.. +....+++..|.|.+++. | =.|++|++++|+.+..+.+|.++|.+++|+|+++. |+
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~--La- 494 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL--LA- 494 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe--EE-
Confidence 999999999999984 445678888888998882 3 37999999999999999999999999999999983 44
Q ss_pred ecCCCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe------------
Q 017642 234 PGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR------------ 299 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~------------ 299 (368)
+|+.|.+|++|+.-.. .+.++. +...+..++|+|+|+.|++++.||. |.+||...+..+..+.+
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D 572 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETD 572 (893)
T ss_pred eccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccccc
Confidence 5999999999986554 444443 4567899999999999999999999 99999987655533332
Q ss_pred ------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 300 ------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 300 ------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
.......+.+++++||.++++|+..+.|+||++.++--.+
T Consensus 573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 1123578999999999999999999999999998875443
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-29 Score=199.99 Aligned_cols=247 Identities=15% Similarity=0.270 Sum_probs=204.7
Q ss_pred cccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 154 (368)
.....+|.+.|..++|+|- |..||+++ |+.|+||+... ..-.+...+...|...|.+++|+|.+.++++++-|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---- 82 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---- 82 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc----
Confidence 4456789999999999998 88999999 88899999874 33344455656789999999999999999999998
Q ss_pred CCcEEEEeCCCC--cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC---CeEEEEEeccCCCeeEEEEecC
Q 017642 155 LNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQG 225 (368)
Q Consensus 155 ~~~i~vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~ 225 (368)
.++.||.-..+ +++..++ |...|.+++|+++|.+|+ .|+.|-||.+.. .++...++.|...|..+.|+|.
T Consensus 83 -~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 83 -ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred -ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 99999986544 6888888 999999999999999999 599999999963 4678888999999999999998
Q ss_pred CCeEEEEeecCCCCeEEEEecC----cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-------Cc--
Q 017642 226 VGSLVLVCPGLQKGQVRVEHYA----SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT-- 292 (368)
Q Consensus 226 ~~~~~l~~~g~~dg~i~i~~~~----~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-------~~-- 292 (368)
.. +|+ +++.|.+|++|... ..+++++.+|...|.+++|++.|..|+++++|++ |+||-... ++
T Consensus 162 ~d--lL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y 237 (312)
T KOG0645|consen 162 ED--LLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALY 237 (312)
T ss_pred cc--eeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceE
Confidence 76 344 47899999995544 3678899999999999999999999999999999 99997321 11
Q ss_pred ----------------eeEeeE----------------eccCcccEEEEEEecC-CCEEEEEeCCCeEEEEEcc
Q 017642 293 ----------------LLQEVR----------------RGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 293 ----------------~~~~~~----------------~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~ 333 (368)
.+..|+ .+.|...|++++|.|. ...|+++++||.|++|.+.
T Consensus 238 ~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 238 DVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 011111 1336678999999995 6789999999999999875
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=231.37 Aligned_cols=240 Identities=14% Similarity=0.190 Sum_probs=206.8
Q ss_pred ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
-...+|+..|.++.|.| .+.+|++++ |+.|+||++-. ...+.+++. +|...|.++.|+..+..+.+++.| +
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD-----~ 280 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFD-----R 280 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhh-cchhhhhhhhccccCCeeeeeecc-----e
Confidence 45679999999999999 788889888 99999999976 333446776 999999999999999999999998 9
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEeeCc-cEE-E--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIV-V--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l-~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
.|++||+++|+++..+.....++++.|+|++ ..+ + .|+.|+.||+++++.++.+..|-+.+..+.|-+++..++.
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis- 359 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS- 359 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee-
Confidence 9999999999999999999999999999987 333 3 6999999999999999999999999999999999997443
Q ss_pred eecCCCCeEEEEecCcce-----------------------------------------------eeeeeccC--cceEE
Q 017642 233 CPGLQKGQVRVEHYASKR-----------------------------------------------TKFIMAHD--SRIAC 263 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~~~~-----------------------------------------------~~~~~~~~--~~i~~ 263 (368)
.+.|+.++||...... .+.+++|. +.-..
T Consensus 360 --sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 360 --SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred --eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 4689999998765210 12234443 33567
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEE
Q 017642 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN 331 (368)
Q Consensus 264 v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd 331 (368)
+.|||||.+|++|+.||. +.+||.++.+.+..++. |.+.+..+.|+|.. ..+|+++.||.|++|+
T Consensus 438 v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 899999999999999999 99999999999999998 78899999999965 4789999999999996
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=5e-32 Score=225.24 Aligned_cols=243 Identities=14% Similarity=0.148 Sum_probs=209.9
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
+...|+..|.++.|+++|.++++|+ ++.|++|+.+-.... .+...|...|.+++|+++...++++++| |+|
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk---~~~ahh~eaIRdlafSpnDskF~t~SdD-----g~i 204 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK---IIQAHHAEAIRDLAFSPNDSKFLTCSDD-----GTI 204 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH---HhhHhhhhhhheeccCCCCceeEEecCC-----CeE
Confidence 4567999999999999999999999 555999996533222 2332556889999999999999999998 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
+|||....+....+. |.-.|.+++|+|...+++ .|..|++||.+++.++.++..|...|..+.|+++++. |++
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~--Llt- 281 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW--LLT- 281 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCe--eEE-
Confidence 999999888877887 999999999999887777 4789999999999999999999999999999999964 444
Q ss_pred cCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642 235 GLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 235 g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (368)
++.|..+++++.. .+.+..+++|+..++++.|+|-. .+|.+|+.||. |..|.+...+++..+.. .|...|++++|+
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~h 359 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAYH 359 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeecc
Confidence 7899999996655 78888999999999999999954 48999999999 99999886677766654 388999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCC
Q 017642 313 SNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 313 p~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
|-|.+|++|+.|.++++|.-..+
T Consensus 360 PlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccceeEeecCCCcceeeeccCCC
Confidence 99999999999999999976543
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=2.3e-30 Score=212.55 Aligned_cols=245 Identities=17% Similarity=0.227 Sum_probs=205.3
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
......+|.+.|+++.|+.||.+||+|+ ++.|+||+..++..... +. ..-..+.-+.|+|...+++.|+.|
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~--~~-~e~~dieWl~WHp~a~illAG~~D----- 169 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK--LD-QEVEDIEWLKWHPRAHILLAGSTD----- 169 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE--ee-cccCceEEEEecccccEEEeecCC-----
Confidence 4556789999999999999999999999 99999999988776633 32 344556678899999999999998
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCC----------------
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN---------------- 215 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~---------------- 215 (368)
|.+.+|.+..+...+.+. |..++++-.|.|+|+.++ .||+|++||..+++++..+....+
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 999999999987777777 999999999999999988 699999999999988777651110
Q ss_pred -----------------------------------CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcc
Q 017642 216 -----------------------------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR 260 (368)
Q Consensus 216 -----------------------------------~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~ 260 (368)
.+.++.+.|....+-|++.|+.||+|.||+.....++..-.|...
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence 001112222222333444588999999999999888888899999
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 261 i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
|..+.|-+ ..+|++++.+|. |++||.++|+++..+.+ |...|.+++++|++++++++|.|++.+||++.
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999988 679999999999 99999999999999999 88899999999999999999999999999874
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=3.2e-30 Score=218.14 Aligned_cols=243 Identities=16% Similarity=0.239 Sum_probs=210.9
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
.......|.++|.++.|+.+|.+|++++ |+++.|||..++... +.+. -|.....++.|..+..+..+ +.|
T Consensus 268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~--q~f~-~~s~~~lDVdW~~~~~F~ts-~td----- 338 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK--QQFE-FHSAPALDVDWQSNDEFATS-STD----- 338 (524)
T ss_pred hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE--Eeee-eccCCccceEEecCceEeec-CCC-----
Confidence 3456678999999999999999999999 999999998776665 4443 46666678888776665554 444
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC----
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---- 227 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 227 (368)
+.|+|+.+....++.++. |.+.|.++.|+|.+.+++ .|++++||.+....+...+..|...|..+.|+|.|.
T Consensus 339 ~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 339 GCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred ceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCC
Confidence 999999999999999998 999999999999999999 699999999998889999999999999999999763
Q ss_pred ---eEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc
Q 017642 228 ---SLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (368)
Q Consensus 228 ---~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 303 (368)
...++. .+.|++|++|+.. +.++..+..|..+|++++|+|+|+|+|+|+.||. |.||++++++.++.+.+ .
T Consensus 419 ~~~~~~l~s-as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~~---~ 493 (524)
T KOG0273|consen 419 PNMNLMLAS-ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKTGKLVKSYQG---T 493 (524)
T ss_pred CcCCceEEE-eecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEeccccchheeEeecC---C
Confidence 234444 5679999997754 5778889999999999999999999999999999 99999999999999885 5
Q ss_pred ccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+.|..++|+.+|..|..+-.|+.+++-|++
T Consensus 494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 494 GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 679999999999999999899999999985
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=6.2e-32 Score=224.65 Aligned_cols=243 Identities=12% Similarity=0.178 Sum_probs=206.5
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~ 163 (368)
...|..|.|.|+|+.|++|+ .+.+.+|+.....-+ ..+. .|...|.++.|+.++.++++++.+ |.|++|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--tilQ-aHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TILQ-AHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHhh-hhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence 44899999999999999999 555999996433322 2233 899999999999999999999998 99999996
Q ss_pred CCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642 164 HQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (368)
Q Consensus 164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d 238 (368)
+... ++.+. |...|++++|+|+...++ .||+|+|||....+..+.+.+|.-.|.+++|+|... +++ +|+.|
T Consensus 168 nmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--Lia-sgskD 243 (464)
T KOG0284|consen 168 NMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIA-SGSKD 243 (464)
T ss_pred chhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeE-EccCC
Confidence 6543 44444 569999999999665555 699999999998888888999999999999999876 344 58899
Q ss_pred CeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC-CC
Q 017642 239 GQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQ 316 (368)
Q Consensus 239 g~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~ 316 (368)
..|++|+. ++.++.++.+|+..|..+.|++++++|++++.|.. ++++|+++.+.++.+++ |...|+++.|+|- ..
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence 99999775 45888999999999999999999999999999999 99999999999999998 8889999999994 56
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642 317 WLAVSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 317 ~l~s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
+|.+|+.||.|..|.+...++....+
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred ceeeccCCCceEEEeccccccccCCC
Confidence 88899999999999998665555444
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.4e-29 Score=225.58 Aligned_cols=242 Identities=18% Similarity=0.358 Sum_probs=204.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v 160 (368)
....+|..++|+..|.+||.|+.+ .+-||++....-++.++ +|...+.++.+++++..+++|++| |+|+|
T Consensus 305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaTG~eD-----gKVKv 376 (893)
T KOG0291|consen 305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIATGAED-----GKVKV 376 (893)
T ss_pred cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEeccCC-----CcEEE
Confidence 345689999999999999999944 59999998766665443 889999999999999999999998 99999
Q ss_pred EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC-CCeeEEEEecCCCeEEEEeec
Q 017642 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~g 235 (368)
||...+-|..+|. |...|+.+.|+..++.++ .||+|+.||+...+..+++..+. ....+++..|.|. +++.|
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe---lV~AG 453 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE---LVCAG 453 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC---EEEee
Confidence 9999999999999 999999999999999888 69999999999999999986533 2345677777776 44446
Q ss_pred CCCC-eEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEe
Q 017642 236 LQKG-QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 236 ~~dg-~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s 312 (368)
+.|. .|.+|.... +.+..+.+|+++|.+++|+|+|..|++++.|.+ ||+||+-... .+.++. +...+..++|+
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfr 529 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFR 529 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEc
Confidence 6554 567788665 566678999999999999999999999999999 9999987543 344555 45579999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 313 SNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 313 p~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
|||+-|++++.||.|.+||++...+.-
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeec
Confidence 999999999999999999998876653
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.6e-30 Score=227.05 Aligned_cols=249 Identities=14% Similarity=0.188 Sum_probs=220.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v 160 (368)
..|.+.|-++.|+|...+++++- .+.|.|||.++...+ +.+. -....+.+..|-....++++|++| ..|+|
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfe-V~~~PvRa~kfiaRknWiv~GsDD-----~~IrV 81 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFE-VSEVPVRAAKFIARKNWIVTGSDD-----MQIRV 81 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeee-ecccchhhheeeeccceEEEecCC-----ceEEE
Confidence 34888999999999999998888 777999998876665 5554 567778888888899999999998 99999
Q ss_pred EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
|+.++++.+..|. |.+-|++++.+|..-+++ .|-.|++||-+.+ .+.+++++|..-|..++|.|.....+ + ++
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF-a-S~ 159 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF-A-SA 159 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce-e-ee
Confidence 9999999999999 999999999999988888 4789999999764 78889999999999999999877644 3 47
Q ss_pred CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCC--CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642 236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g--~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (368)
+-|++|++|.... .+..++++|...|+|+.+-+-| .+|++|++|.. |+|||..+..|++++.+ |...|..+.|+
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~fh 236 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFFH 236 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEec
Confidence 8999999998765 5677899999999999998755 49999999999 99999999999999999 77899999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (368)
Q Consensus 313 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 343 (368)
|.=.++++|++||++|||+-.+-+.+...+-
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence 9999999999999999999988877766553
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.8e-29 Score=216.35 Aligned_cols=250 Identities=16% Similarity=0.210 Sum_probs=198.9
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
...+.|..-|+|+.|+|||+++++.+ |+.+.+||=.+++......-...|...+.++.|+|+...+++.+.| .+
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt 258 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KT 258 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ce
Confidence 45678999999999999999999988 9999999988777664433224789999999999999999999998 99
Q ss_pred EEEEeCCCCcEEEEE-------------------------------------------e-cCCceeEEEEeeCccEEE--
Q 017642 158 VMIWDDHQSRCIGEL-------------------------------------------S-FRSEVRSVKLRRDRIIVV-- 191 (368)
Q Consensus 158 i~vwd~~~~~~~~~~-------------------------------------------~-~~~~v~~~~~~~~~~~l~-- 191 (368)
++|||+.+.++++++ . |...|+++..++++.++.
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 999999887655443 2 677899999999999888
Q ss_pred -eCCcEEEEEcCCCeEE-----------EEEeccC---------------------------------------------
Q 017642 192 -LEQKIFVYNFADLKLL-----------HQIETIA--------------------------------------------- 214 (368)
Q Consensus 192 -~d~~i~vwd~~~~~~~-----------~~~~~~~--------------------------------------------- 214 (368)
.||.|.-||..+|..- ..+....
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG 418 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence 6999999998665311 0010000
Q ss_pred -------------------------CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce---eeeeeccCcceEEEEE
Q 017642 215 -------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFAL 266 (368)
Q Consensus 215 -------------------------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~~~~~i~~v~~ 266 (368)
....+++++|+++. ++. |++|+.|+|+...+.. ...+..|.++|+++++
T Consensus 419 ~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~--vaV-GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE--VAV-GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred EEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE--EEE-ecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 01124566777764 333 7799999998777633 3346789999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 267 sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
+||+.|||+|...+. +.+||+.+.+.. .-.-..|.+.|.+|+|+|+..++|+|+.|..|.||+++.+...
T Consensus 496 Spd~~yla~~Da~rk-vv~yd~~s~~~~-~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRK-VVLYDVASREVK-TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CCCCcEEEEeccCCc-EEEEEcccCcee-cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 999999999999999 999999988763 3232338899999999999999999999999999999887654
No 30
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3e-30 Score=202.97 Aligned_cols=253 Identities=16% Similarity=0.223 Sum_probs=207.7
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN 156 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~ 156 (368)
....+|...|.+++|+-+|..|++|+ |+.+.+|+++........... +|...+-.++|++. ...+++.+.| .
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~d-----k 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGD-----K 87 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCC-----c
Confidence 44568899999999999999999999 999999999887555444443 67777888888653 2233444443 8
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
+|++||++.+++...+...+.-.-+.|+|+|.+++ .|..|...|.++.+.....+ ....+..++|+-+++ ++++.
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd-~Fflt 165 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND-LFFLT 165 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC-EEEEe
Confidence 99999999999999999777777889999999888 57899999999887766654 344667788985554 45555
Q ss_pred ecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642 234 PGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 234 ~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (368)
+| .|.|.| --...+++..+++|.....||.|+|+|+|+|+|+.|.. +.+||+...-+++.+.. +.-+|..+.|+
T Consensus 166 ~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS 240 (313)
T KOG1407|consen 166 NG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFS 240 (313)
T ss_pred cC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEec
Confidence 44 689998 33466888999999999999999999999999999999 99999999999999988 78899999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 313 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
.||++||++++|..|-|=++++|.+.-+.+-.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEeecc
Confidence 99999999999999999999999877655443
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.9e-29 Score=214.56 Aligned_cols=248 Identities=21% Similarity=0.336 Sum_probs=209.6
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
...|...|.+++|+|++++|++++ ++.+++|++...+.. ..+. .+...+..+.|.+++..+++++.+ +.|+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~ 76 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLK-GHTGPVRDVAASADGTYLASGSSD-----KTIR 76 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEe-cCCcceeEEEECCCCCEEEEEcCC-----CeEE
Confidence 347999999999999999999999 888999999876543 3333 566677789999988777777766 9999
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
+||+.+++.+..+. |...+.++.|++++.+++ . ++.|++||+++++....+..|...+.++.|++++.. +++ +
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~-~ 153 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VAS-S 153 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE--EEE-E
Confidence 99999888888887 788999999999987777 3 899999999989988888888889999999999653 333 5
Q ss_pred CCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 236 LQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 236 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
+.++.+++|+.. .+....+..|...+.++.|+|+++.|++++.++. |++||+.+++.+..+.. |...+.++.|+++
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~ 230 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPD 230 (289)
T ss_pred cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCC
Confidence 569999998876 4666777888889999999999999999999999 99999999988888865 6779999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642 315 AQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 315 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
+.++++++.||.|++||+.+++......
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 8899888889999999998766544333
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=231.77 Aligned_cols=240 Identities=19% Similarity=0.311 Sum_probs=208.5
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
...|...|.+++|+|+|+++++++ |..|+|||+.. .....+.+. +|...+.+++|++.+..+++++.| ++|+
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~-~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D-----~tvr 271 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD-DGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDD-----GTVR 271 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccC-CCeEEEEec-CCCCceEEEEecCCCCEEEEecCC-----CcEE
Confidence 378999999999999999999999 88899999932 333346675 999999999999999999999998 9999
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe--EEEEEeccCCC--eeEEEEecCCCeEEE
Q 017642 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETIANP--KGLCAVSQGVGSLVL 231 (368)
Q Consensus 160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~l 231 (368)
|||+++++++..+. |.+.|.+++|++++.+++ .|+.|++||+.++. +...+..+... +..+.|+|++++++.
T Consensus 272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence 99999999999999 999999999999999998 59999999999998 56677665555 899999999997543
Q ss_pred EeecCCCCeEEEEecC-cceeeeeeccCcc---eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC-cccE
Q 017642 232 VCPGLQKGQVRVEHYA-SKRTKFIMAHDSR---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-RAEI 306 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~---i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~-~~~v 306 (368)
+..|+.+++|+.. ...+..+.+|... +.+...++.++++++|+.|+. |++||+.++..+..+.+ | ...+
T Consensus 352 ---~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~--h~~~~~ 425 (456)
T KOG0266|consen 352 ---ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEG--HSKAAV 425 (456)
T ss_pred ---ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcC--CCCCce
Confidence 5579999999888 5667777887764 444556778999999999999 99999999999989988 6 7889
Q ss_pred EEEEEecCCCEEEEEe--CCCeEEEEEcc
Q 017642 307 YSLAFSSNAQWLAVSS--DKGTVHVFNLK 333 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s--~dg~i~iwd~~ 333 (368)
..+.+++...++++++ .|+.|++|..+
T Consensus 426 ~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 426 SDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999988 78999999764
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=214.21 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=195.3
Q ss_pred CCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeCCeEEEEecCCCC
Q 017642 74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (368)
Q Consensus 74 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~ 151 (368)
+..+..+...|.+.|+.+.||++|++||+++ |.+..+|.+..... .+..++. +|...|..+.|+|+..++++++.+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~- 290 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFD- 290 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCch-
Confidence 3445677889999999999999999999999 88899999865544 3345565 899999999999999999999987
Q ss_pred CCCCCcEEEEeCCCCcEEEEEec--CCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC-CCeeEEEEecC
Q 017642 152 QYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQG 225 (368)
Q Consensus 152 ~~~~~~i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~ 225 (368)
..+.+||+.+|.....+.+ ...+.+++|.|||..++ .|++|..||+. |+.+...++-. ..|.++++.+|
T Consensus 291 ----e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 291 ----EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred ----HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCC
Confidence 8899999999999999884 48899999999998877 58999999984 44444444322 35788999999
Q ss_pred CCeEEEEeecCCCCeEEEEecCcc------------------------------------------eeeeeeccCcc--e
Q 017642 226 VGSLVLVCPGLQKGQVRVEHYASK------------------------------------------RTKFIMAHDSR--I 261 (368)
Q Consensus 226 ~~~~~l~~~g~~dg~i~i~~~~~~------------------------------------------~~~~~~~~~~~--i 261 (368)
|+.+++++ .|..|++++...+ .+..+.+|... |
T Consensus 366 gk~vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 366 GKYVLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI 442 (519)
T ss_pred CcEEEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence 99866654 4666666443321 12223344332 2
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCC
Q 017642 262 ACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 262 ~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~ 335 (368)
-.-+|-- +..++++|++|+. |+||+..+|+++.++.+ |...|++++|+|.. .++|++++||+||||.....
T Consensus 443 IrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--CcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 2222322 3468999999999 99999999999999998 88999999999955 57899999999999987654
No 34
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=9.3e-30 Score=204.00 Aligned_cols=241 Identities=14% Similarity=0.155 Sum_probs=206.5
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP 154 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~ 154 (368)
-.-...+|.++|..+.|++|+..|++++ |+.|+.||+++++.. +.+. .|...+..+.....+. .+.+++.|
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~--rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD---- 154 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI--RKHK-GHTSFVNSLDPSRRGPQLVCSGSDD---- 154 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceee--ehhc-cccceeeecCccccCCeEEEecCCC----
Confidence 3445569999999999999999999888 999999999988877 4454 6777777777665554 55666666
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
+++++||+++.+.++++..+..++++.|..++..+. .|+.|++||++......++.+|.+.|+.+..+++|..+
T Consensus 155 -~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~l-- 231 (338)
T KOG0265|consen 155 -GTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFL-- 231 (338)
T ss_pred -ceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcc--
Confidence 999999999999999999999999999999877666 69999999999999999999999999999999999863
Q ss_pred EeecCCCCeEEEEecCc-----ceeeeeeccCc----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642 232 VCPGLQKGQVRVEHYAS-----KRTKFIMAHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~-----~~~~~~~~~~~----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~ 302 (368)
. +-+.|.++++|+... +++..+.+|.. ....++|+|+++.+..|+.|.. +++||......++.+.+ |
T Consensus 232 l-snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklpG--h 307 (338)
T KOG0265|consen 232 L-SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLPG--H 307 (338)
T ss_pred c-cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcCC--c
Confidence 3 467899999988764 45666766533 3457899999999999999999 99999988899999998 8
Q ss_pred cccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 303 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
.+.|.+++|+|...+|.+++.|++|++=.
T Consensus 308 ~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 308 YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 89999999999999999999999998743
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.2e-29 Score=196.67 Aligned_cols=243 Identities=14% Similarity=0.181 Sum_probs=209.5
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
...+|+.+++-+.|+.+|.+|.+++ |....||--.+++.. .++. +|...|+++..+.+...+++++.| .++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGSAD-----~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGSAD-----QTA 76 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecccc-----cee
Confidence 4568999999999999999999999 888999987666665 5565 999999999999999999999998 999
Q ss_pred EEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e------CCcEEEEEcC-------CCeEEEEEeccCCCeeEEEEe
Q 017642 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L------EQKIFVYNFA-------DLKLLHQIETIANPKGLCAVS 223 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~------d~~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~~ 223 (368)
++||+++|+++..++....|..+.|+.+|.+++ . .+.|.++|++ ..++...+..+...++...|.
T Consensus 77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999999999999999999999998877 2 4679999997 345577777788899999999
Q ss_pred cCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe--
Q 017642 224 QGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-- 299 (368)
Q Consensus 224 ~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-- 299 (368)
+-++. +++ |..||.|.+|+... ..+...+.|...|+.|++++|..++++++.|.+ -++||+.+.++++++..
T Consensus 157 ~l~~~--ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 157 PLGET--IIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred ccCCE--EEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeecc
Confidence 99985 443 88999999988775 445556789999999999999999999999999 99999987665555431
Q ss_pred ---------------------------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642 300 ---------------------------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVH 328 (368)
Q Consensus 300 ---------------------------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~ 328 (368)
..|-++|++++|+|+|+..++|++||.|+
T Consensus 233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 12678999999999999999999999999
Q ss_pred EEEccC
Q 017642 329 VFNLKV 334 (368)
Q Consensus 329 iwd~~~ 334 (368)
+..++.
T Consensus 313 ~h~Fd~ 318 (327)
T KOG0643|consen 313 LHHFDS 318 (327)
T ss_pred EEEecc
Confidence 987653
No 36
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=227.92 Aligned_cols=247 Identities=17% Similarity=0.268 Sum_probs=195.5
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC----------------------------c-c---------
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR----------------------------E-I--------- 119 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----------------------------~-~--------- 119 (368)
.+...|.+.|+++.||+||+|||+|+ |+.|+||.+...+ . .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 34448999999999999999999999 8889999986500 0 0
Q ss_pred ------e--------------EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCcee
Q 017642 120 ------F--------------RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR 179 (368)
Q Consensus 120 ------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~ 179 (368)
. ...| .+|...|+++.|+.++.+|.+ +.| .+|+||++...+|++.|.|..-|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~fLLSS-SMD-----KTVRLWh~~~~~CL~~F~HndfVT 413 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNNFLLSS-SMD-----KTVRLWHPGRKECLKVFSHNDFVT 413 (712)
T ss_pred cccCCccccCCCccccccccchhhh-hccchhheecccccCCeeEec-ccc-----ccEEeecCCCcceeeEEecCCeeE
Confidence 0 0001 478889999999988776555 455 999999999999999999999999
Q ss_pred EEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee--
Q 017642 180 SVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-- 253 (368)
Q Consensus 180 ~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~-- 253 (368)
|++|+| |.++++ .|++|+||++...+.+.... ...-|++++|.|||+..++ |+.+|.+++++..+..+..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEee
Confidence 999999 566776 69999999998877665554 3478999999999986443 7799999997766633321
Q ss_pred -eecc------CcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642 254 -IMAH------DSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (368)
Q Consensus 254 -~~~~------~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg 325 (368)
+..| ...|+.+.|.|... .|++.+.|.. |||+|.++.+++..|++......-....|+.||++|+++++|.
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1111 22799999997443 5777788888 9999999999999999764445556788999999999999999
Q ss_pred eEEEEEccCCCC
Q 017642 326 TVHVFNLKVNSG 337 (368)
Q Consensus 326 ~i~iwd~~~~~~ 337 (368)
.|+||++.....
T Consensus 569 ~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 569 WVYIWKNDSFNS 580 (712)
T ss_pred eEEEEeCCCCcc
Confidence 999999865544
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.2e-31 Score=216.45 Aligned_cols=234 Identities=14% Similarity=0.300 Sum_probs=195.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
.....|+|+.+. ...+++|. |++|+|||.+..... +.+. +|...++++.|... .+++|+.| .+|++|
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqyd~r--viisGSSD-----sTvrvW 262 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQYDER--VIVSGSSD-----STVRVW 262 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeeccce--EEEecCCC-----ceEEEE
Confidence 355689999984 45788888 999999998766655 5565 99999999999765 77888887 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCe---EEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
|+++|+++.++- |.+.|..+.|+..-..-. .|.+|.+||+.... +.+.+.+|...|+.+.|+. + +++ +++
T Consensus 263 Dv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIV-sAS 337 (499)
T KOG0281|consen 263 DVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIV-SAS 337 (499)
T ss_pred eccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEE-Eec
Confidence 999999999987 899999999986433333 69999999996643 3456678999999888753 3 344 366
Q ss_pred CCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642 237 QKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (368)
Q Consensus 237 ~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 315 (368)
.|.+|++|+.+. ..++++.+|...|.|+.+ .|+++++|+.|.+ |++||+..|.+++.+.+ |..-|.++.|. .
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRFd--~ 410 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRFD--N 410 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheeec--C
Confidence 799999988765 778889999999999988 7899999999999 99999999999999998 88899999995 5
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCC
Q 017642 316 QWLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 316 ~~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
+.+++|+.||+|+|||+..+.....
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ceeeeccccceEEEEecccccCCcc
Confidence 7899999999999999988766543
No 38
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.97 E-value=7.1e-28 Score=198.52 Aligned_cols=244 Identities=39% Similarity=0.690 Sum_probs=214.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~ 164 (368)
...+..+.|+.+...|..|+..+.++|+.+..+...... .....++.+.|+...+++++..+- +.+++++++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~---~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD---TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc---CCCeEEEEeecccceeEEEecCCC-----ceEEEEEcc
Confidence 456788889999999999999999999998776642222 577889999999999999998654 789999999
Q ss_pred CCcEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEecc-CCCeeEEEEecCCCeEEEEeecCC-CCeEE
Q 017642 165 QSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ-KGQVR 242 (368)
Q Consensus 165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~g~~-dg~i~ 242 (368)
.+..++++.....|.++.++.+...++....|+|||+++.+.++++... .++-..++++++....++++.++. .|.|.
T Consensus 77 k~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 77 KKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred cCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999999999999999999998888887777999999999999998765 556667888888887788886654 58899
Q ss_pred EEe-cCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642 243 VEH-YASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 243 i~~-~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 321 (368)
+|+ .+.+.+..+.+|++.+.+++|+++|.+||++++.|+.||||.+.+|+.+++|+++.....|.+++|+||+++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 955 4558888899999999999999999999999999999999999999999999998777789999999999999999
Q ss_pred eCCCeEEEEEccCCC
Q 017642 322 SDKGTVHVFNLKVNS 336 (368)
Q Consensus 322 s~dg~i~iwd~~~~~ 336 (368)
+..++|+||.+++..
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 999999999998876
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=192.74 Aligned_cols=220 Identities=16% Similarity=0.275 Sum_probs=187.6
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
+.....+|...|+++.|..+|+++++|+ |+.++|||+...... +.+ .+...|.++..+|+..-++++..+
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q--R~~--~~~spVn~vvlhpnQteLis~dqs----- 145 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ--RNY--QHNSPVNTVVLHPNQTELISGDQS----- 145 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc--hhc--cCCCCcceEEecCCcceEEeecCC-----
Confidence 4456678999999999999999999999 778999999874443 566 566889999999999999999988
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC------eEEEEEeccCCCeeEEEEec
Q 017642 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL------KLLHQIETIANPKGLCAVSQ 224 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~ 224 (368)
|.|++||+.+..+...+- ....|.++...+||..++ ..|..++|++-+. +++..++.|.+.+..+.++|
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 999999999988877775 567899999999999998 5789999999553 45667888999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642 225 GVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (368)
Q Consensus 225 ~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~ 302 (368)
|+++ |++ ++.|.+++||..+.- ....+++|...+..++||.||+||++|+.|+. +++||+..++.++.+.+ |
T Consensus 226 d~k~--lat-~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~-~rlW~~~~~k~v~qy~g--h 299 (311)
T KOG0315|consen 226 DVKY--LAT-CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT-ARLWDLSAGKEVRQYQG--H 299 (311)
T ss_pred CCcE--EEe-ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc-eeecccccCceeeecCC--c
Confidence 9985 554 567999999988774 44567899999999999999999999999999 99999999999999988 4
Q ss_pred cccEEEEEE
Q 017642 303 RAEIYSLAF 311 (368)
Q Consensus 303 ~~~v~~l~~ 311 (368)
.....+++.
T Consensus 300 ~K~~vc~~l 308 (311)
T KOG0315|consen 300 HKAAVCVAL 308 (311)
T ss_pred ccccEEEEe
Confidence 445555554
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.1e-28 Score=208.20 Aligned_cols=238 Identities=21% Similarity=0.342 Sum_probs=204.4
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
....|...+..+.|++++++|++++ ++.|++|++...+.. ..+. .+...+.++.+.+++.++++++.+ +.|
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i 117 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV--RTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KTI 117 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce--EEEe-ccCCcEEEEEEcCCCCEEEEecCC-----CeE
Confidence 4456788899999999999998888 888999999865444 3343 566688999999987778877766 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
++||+.+++....+. |...+.+++|++++.+++ . ++.|++||+++++.+..+..+...+.++.|+++++.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--- 194 (289)
T cd00200 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--- 194 (289)
T ss_pred EEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEE---
Confidence 999999898888888 888999999999988877 3 899999999999888888888889999999999976443
Q ss_pred cCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642 235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (368)
Q Consensus 235 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 313 (368)
++.++.+++|+... ..+..+..|...+.++.|++++.++++++.||. |++||+.+++.+..+.. |...|.+++|++
T Consensus 195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~ 271 (289)
T cd00200 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSP 271 (289)
T ss_pred ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECC
Confidence 33599999988764 555666688889999999999889998888999 99999999998888885 778999999999
Q ss_pred CCCEEEEEeCCCeEEEEE
Q 017642 314 NAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 314 ~~~~l~s~s~dg~i~iwd 331 (368)
++++|++++.||.|++|+
T Consensus 272 ~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 272 DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCEEEEecCCCeEEecC
Confidence 999999999999999996
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.1e-28 Score=236.62 Aligned_cols=240 Identities=15% Similarity=0.217 Sum_probs=194.1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc------ceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCC
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE------IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQY 153 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~ 153 (368)
..|.+.|.+++|+|+|++||+|+ |+.|+||++..... .....+ .+...+.++.|++ ....+++++.|
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~D--- 554 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFE--- 554 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCC---
Confidence 34889999999999999999999 88899999753210 011122 2344677788875 35567888877
Q ss_pred CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec-CCC
Q 017642 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVG 227 (368)
Q Consensus 154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 227 (368)
|.|++||+.+++.+..+. |.+.|++++|++ ++.+++ .|+.|++||+++++.+..+..+ ..+.++.|.+ ++.
T Consensus 555 --g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 555 --GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred --CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC
Confidence 999999999999988887 999999999997 677766 5899999999999888888654 5788888865 454
Q ss_pred eEEEEeecCCCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC------CceeEeeEe
Q 017642 228 SLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRR 299 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~------~~~~~~~~~ 299 (368)
. +++ |+.||.|++|+.... ....+.+|...|.++.|. ++.+|++++.|+. |+|||+.. .+.+..+.+
T Consensus 632 ~--lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 632 S--LAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred E--EEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence 3 443 778999999987653 356678999999999997 7789999999999 99999974 356777776
Q ss_pred ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
|...+..++|++++.+|++|+.|+.|++|+...+.
T Consensus 707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 77889999999999999999999999999986553
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.1e-29 Score=222.11 Aligned_cols=250 Identities=11% Similarity=0.154 Sum_probs=210.5
Q ss_pred CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeCC-eEEEEecCCC
Q 017642 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCN-ILALVGGGPD 150 (368)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d 150 (368)
.+..++..+|++.|.++....+|-+|++|+ |+.+++|.+++.... ..... .+|...+.+++.+.. -.++++++.|
T Consensus 355 ~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 355 TSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred CCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCC
Confidence 444568899999999999777889999999 999999998544332 11222 267777777777543 3577888887
Q ss_pred CCCCCCcEEEEeCCCCc-----EEE----EEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642 151 PQYPLNKVMIWDDHQSR-----CIG----ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK 217 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~-----~~~----~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v 217 (368)
+++++|++...+ .+. +.. |...|++++++|+.++++ .|.+.+||+++..+...++.+|...+
T Consensus 434 -----~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv 508 (775)
T KOG0319|consen 434 -----CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV 508 (775)
T ss_pred -----ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccce
Confidence 999999987622 111 112 899999999999999999 69999999999999999999999999
Q ss_pred eEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (368)
.++.|++..+- ++ +++.|++|+||.... .+++++.+|...|..+.|-.+|+.|++++.||- |+||++++++++.+
T Consensus 509 w~V~Fs~~dq~--la-T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~t 584 (775)
T KOG0319|consen 509 WCVSFSKNDQL--LA-TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMT 584 (775)
T ss_pred EEEEeccccce--eE-eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhh
Confidence 99999999873 44 367899999998765 788999999999999999999999999999999 99999999999999
Q ss_pred eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
+.. |...|++++.++.+.++++|+.||.|.+|.=.+.+
T Consensus 585 lD~--H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 585 LDA--HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhh--ccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 998 88899999999999999999999999999654443
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8e-29 Score=224.18 Aligned_cols=242 Identities=15% Similarity=0.218 Sum_probs=211.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
....|-.++|+|...+++++- .+.|++||..-+... ..|. .|...|..+.|++..-++++|++| ..|++|+
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFVSGGDD-----ykIkVWn 79 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFVSGGDD-----YKIKVWN 79 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEEecCCc-----cEEEEEe
Confidence 345788999999999999998 777999998765555 4565 899999999999999999999998 9999999
Q ss_pred CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (368)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d 238 (368)
.++.+++.++. |-+.|+.+.|++.--+++ .|.+|+||+..+++++..+.+|..-|.|..|+|..+. ++ +++-|
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl--IV-SaSLD 156 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL--IV-SASLD 156 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce--EE-Eeccc
Confidence 99999999988 999999999999999888 5889999999999999999999999999999998773 33 58899
Q ss_pred CeEEEEecCcc------------------------------eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642 239 GQVRVEHYASK------------------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (368)
Q Consensus 239 g~i~i~~~~~~------------------------------~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~ 288 (368)
.+||||+..+- ....+++|...|+-++|+|.-.++++|++|+. |++|.+
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm 235 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM 235 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence 99999997641 01346789999999999999999999999999 999998
Q ss_pred CCCce--eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 289 LDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 289 ~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
...+. +-+.++ |.+.|.++-|+|...++++.|+|++|+|||+++.+...
T Consensus 236 netKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 236 NETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred ccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence 75443 334556 78899999999999999999999999999998876543
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-28 Score=218.66 Aligned_cols=241 Identities=17% Similarity=0.304 Sum_probs=206.1
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
....|.++|..++|+|++.++++|+ |..|+||+....++. .++. +|-..|..+.|+...-+++++++| .+|
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl--ftL~-GHlDYVRt~~FHheyPWIlSASDD-----QTI 117 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL--FTLL-GHLDYVRTVFFHHEYPWILSASDD-----QTI 117 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh--hhhc-cccceeEEeeccCCCceEEEccCC-----CeE
Confidence 4568999999999999999999999 666999999877766 4454 899999999999999999999998 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe-----------------------------
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK----------------------------- 205 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~----------------------------- 205 (368)
+||+..+++++..+. |...|.|..|+|....++ .|.+|+|||+...+
T Consensus 118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 999999999999999 999999999999777777 69999999984311
Q ss_pred EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee---eeeeccCcceEEEEECCCCCEEEEEeCCCcE
Q 017642 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTL 282 (368)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~---~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~ 282 (368)
..+.+++|...|+-++|+|.-. ++.+|+.|..|++|..+.... .+..+|.+.|.++-|+|...++++.++|++
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlp---liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks- 273 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLP---LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS- 273 (1202)
T ss_pred eeeeecccccccceEEecCCcc---eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-
Confidence 1245678888999999998765 344699999999998877554 346789999999999999999999999999
Q ss_pred EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
|+|||+...+.+++++. .....+.++-+|..+++++|- |+-+.||.++..
T Consensus 274 irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleRE 323 (1202)
T KOG0292|consen 274 IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERE 323 (1202)
T ss_pred EEEEecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEccc
Confidence 99999999999999987 556889999999998887764 444777777643
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-26 Score=187.51 Aligned_cols=248 Identities=13% Similarity=0.205 Sum_probs=192.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
-.+.|+++.|+++|.+|++++ |+.++|||...+......... .......++...++.....+...| .+|+..+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~~~i~sStk~d-----~tIryLs 86 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSNTVIHSSTKED-----DTIRYLS 86 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCceEEEccCCCC-----CceEEEE
Confidence 466899999999999999988 779999999877766433321 334555555555565555555555 8999999
Q ss_pred CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (368)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d 238 (368)
+.+.+.++.+. |...|..++.+|-+..++ .|++|++||++..++...+..... ..++|.|.|-. +|. +...
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLi--fA~-~~~~ 161 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLI--FAL-ANGS 161 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcE--EEE-ecCC
Confidence 99999999999 999999999999776666 699999999998888777654333 45789888853 333 4444
Q ss_pred CeEEEEecCc---ceeeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc-EEEEEE
Q 017642 239 GQVRVEHYAS---KRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-IYSLAF 311 (368)
Q Consensus 239 g~i~i~~~~~---~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~ 311 (368)
+.|++++.+. ++..++. ......+.|.|+|||++|+.+...+. +++.|.-+|..+..+......+. -.+.+|
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 5899966553 3333332 34667899999999999999999999 99999999999988887543332 257789
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (368)
Q Consensus 312 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 343 (368)
+||++++++|+.||+|++|+++++.......+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 99999999999999999999999887665444
No 46
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=3.2e-27 Score=202.64 Aligned_cols=254 Identities=13% Similarity=0.226 Sum_probs=207.9
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCC-CCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-PQYPL 155 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~~~~ 155 (368)
..+.+.|...++-..|+|.|.|+|+|+ .+.|||||....+..+..++. .-...+.++.|+.++..++..++. ..|
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~-v~aG~I~Di~Wd~ds~RI~avGEGrerf-- 128 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ-VLAGPIKDISWDFDSKRIAAVGEGRERF-- 128 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee-ecccccccceeCCCCcEEEEEecCccce--
Confidence 567889999999999999999999999 777999998776666666665 566677888888777666554432 123
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
|.+.+|| +|..+.++. |...|.++.|-|..-+=+ .|+.|.+|+=.-.+...++..|..-|.++.|+|||+.
T Consensus 129 g~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~-- 204 (603)
T KOG0318|consen 129 GHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR-- 204 (603)
T ss_pred eEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--
Confidence 5677776 777888888 999999999999765433 6899999997777777888889999999999999985
Q ss_pred EEeecCCCCeEEEE-ecCcceeeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe-------
Q 017642 231 LVCPGLQKGQVRVE-HYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR------- 299 (368)
Q Consensus 231 l~~~g~~dg~i~i~-~~~~~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~------- 299 (368)
+++ .+.||++.++ -.+++.+..+. +|.+.|.+++|+||++.+++++.|.+ ++|||+.+.+++.++..
T Consensus 205 Fat-~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dq 282 (603)
T KOG0318|consen 205 FAT-AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQ 282 (603)
T ss_pred EEE-ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhce
Confidence 444 4469999994 46667777887 89999999999999999999999999 99999987665554331
Q ss_pred ----------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642 300 ----------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 300 ----------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
..|...|+++..++|+++|++|+.||.|.-|+..++...+-
T Consensus 283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence 12678899999999999999999999999999999877644
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=5.1e-27 Score=229.59 Aligned_cols=236 Identities=13% Similarity=0.220 Sum_probs=194.1
Q ss_pred CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEE
Q 017642 84 PPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMI 160 (368)
Q Consensus 84 h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~v 160 (368)
+...|.+++|++. +.+|++++ |+.|+|||+.+.+.. ..+. .|...|.++.|++ ++..+++++.| +.|++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~i 602 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMK-EHEKRVWSIDYSSADPTLLASGSDD-----GSVKL 602 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--EEec-CCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEE
Confidence 4568999999874 78899888 888999999876544 4454 7888999999986 67788888888 99999
Q ss_pred EeCCCCcEEEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCe-EEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 161 WDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 161 wd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
||+.++..+..+.+...|.++.|++ ++.+++ .|+.|++||+++++ .+..+.+|...|..+.|. ++.. +++ +
T Consensus 603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~--lvs-~ 678 (793)
T PLN00181 603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST--LVS-S 678 (793)
T ss_pred EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE--EEE-E
Confidence 9999999998888777899999964 677777 59999999998765 466777899999999997 5553 443 6
Q ss_pred CCCCeEEEEecCc-------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe---------
Q 017642 236 LQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--------- 299 (368)
Q Consensus 236 ~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--------- 299 (368)
+.|+.|++|+... ..+..+.+|...+.+++|++++.+|++|+.|+. |+||+......+..+..
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCccccc
Confidence 6899999998752 456778899999999999999999999999999 99999876554433221
Q ss_pred --ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 300 --GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 300 --~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
..+...|.+++|++++..|++|+.||.|+||++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 123457999999999999999999999999996
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-27 Score=209.61 Aligned_cols=246 Identities=14% Similarity=0.169 Sum_probs=207.0
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
.....+.+.|+++.|+++|.+|++|. ++.|.|||....+.. ..+...|...+-+++|. ...+.+|+.+ +.
T Consensus 211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGsr~-----~~ 281 (484)
T KOG0305|consen 211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGSRD-----GK 281 (484)
T ss_pred EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEecCC-----Cc
Confidence 33444588999999999999999999 777999998876665 44542388888899997 5566777777 99
Q ss_pred EEEEeCCCCcEEEE-Ee-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 158 VMIWDDHQSRCIGE-LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 158 i~vwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
|..+|++..+.... +. |...|..++|++|+.+++ .|+.+.|||....+....+..|...|.+++|+|....++..
T Consensus 282 I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 282 ILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred EEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE
Confidence 99999998876555 55 999999999999999999 58999999998888888999999999999999999886666
Q ss_pred eecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEE--eCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS--STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
..|+.|+.|++|+........-..-...|.+|.|++..+-|+++ ..++. |.||+..+.+.+..+.+ |...|..++
T Consensus 362 GGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la 438 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLA 438 (484)
T ss_pred cCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEE
Confidence 66788999999887765544444456779999999998766554 34556 99999999999999988 888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
++|||..+++|+.|.++++|++-...
T Consensus 439 ~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 439 LSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ECCCCCEEEEecccCcEEeccccCCC
Confidence 99999999999999999999997753
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=8.9e-28 Score=213.98 Aligned_cols=244 Identities=18% Similarity=0.258 Sum_probs=210.9
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc----------------------------------
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE---------------------------------- 125 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~---------------------------------- 125 (368)
...+|...|.+++++.+...+++|..+.++||+.++.++.......
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 3468999999999999999999998889999998876654221100
Q ss_pred ---cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-----Cc--E------EEEEecCCceeEEEEeeCccE
Q 017642 126 ---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-----SR--C------IGELSFRSEVRSVKLRRDRII 189 (368)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-----~~--~------~~~~~~~~~v~~~~~~~~~~~ 189 (368)
..|...++.++..+++..+++++.| .+|++||..- |. . .++++....|.|+.++||+++
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCC-----cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 4677788888889999999999988 9999999641 11 1 133446789999999999999
Q ss_pred EE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEE
Q 017642 190 VV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFA 265 (368)
Q Consensus 190 l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~ 265 (368)
++ .|.+++||-+.+.+....+.+|.-+|.++.++||++. ++ +|+.|..|+||-.+- .+.+.+.+|...|.++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl--iv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL--IV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe--EE-eccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99 6999999999999999999999999999999999983 33 588999999998875 66778999999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
|.|....+.+++.|+. |+-||-.+.+.++.+.+ |...|++++.+|+|.++++++.|.+|++|.-..
T Consensus 600 F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EcccceeEEEecCcce-EEeechhhhhhheeecc--chheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999 99999999999999998 778999999999999999999999999998766
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1e-28 Score=201.90 Aligned_cols=241 Identities=15% Similarity=0.285 Sum_probs=193.3
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
.....+|++.|.|+.|. .+.+++|+ |.+|+|||+++++.. ..+- .|...++.+.|+.+.. ++++.| .
T Consensus 230 ~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l--~tli-hHceaVLhlrf~ng~m--vtcSkD-----r 297 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL--NTLI-HHCEAVLHLRFSNGYM--VTCSKD-----R 297 (499)
T ss_pred HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh--hHHh-hhcceeEEEEEeCCEE--EEecCC-----c
Confidence 34667999999999985 55889998 889999999998876 4453 7888999999987655 556666 9
Q ss_pred cEEEEeCCCCcEE---EEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 157 KVMIWDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 157 ~i~vwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
++.+||+.....+ +.+. |...|..+.|+.. +++ .|.+|++|++.+++.++++.+|...|.|+.+. ++
T Consensus 298 siaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r-- 371 (499)
T KOG0281|consen 298 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR-- 371 (499)
T ss_pred eeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce--
Confidence 9999998765422 2233 8889999998765 555 69999999999999999999999988877653 43
Q ss_pred EEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce---------eEeeEe
Q 017642 230 VLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---------LQEVRR 299 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~---------~~~~~~ 299 (368)
++.+|+.|.+|++|+.. +.+++.+++|+.-|.|+.| |.+.+++|+.||. |+|||+..+.. +..+..
T Consensus 372 -lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 372 -LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred -EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEecccccCCcccccchHHHhhhh
Confidence 33469999999998766 4677889999999999999 6778999999999 99999987542 333444
Q ss_pred ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
|.+.|..+.|. ...+++++.|.+|.|||+.++.........
T Consensus 448 --hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~~~~~~r 488 (499)
T KOG0281|consen 448 --HSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPSAAEETR 488 (499)
T ss_pred --ccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCccccccCC
Confidence 78899999995 567889999999999999988766444444
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=192.03 Aligned_cols=242 Identities=14% Similarity=0.183 Sum_probs=203.4
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
-+..+|.+.|+...++.+....|++. |-+-+|||.-++... ..| .|..-|..++|+.+...+++++.+ .-
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf--~hkhivk~~af~~ds~~lltgg~e-----kl 123 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSF--EHKHIVKAVAFSQDSNYLLTGGQE-----KL 123 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhh--hhhheeeeEEecccchhhhccchH-----HH
Confidence 35568999999999999988888888 888999998877766 556 466667888999999999999987 89
Q ss_pred EEEEeCCCCc-EEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 158 VMIWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 158 i~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
++|||++..+ +..++. |.+.|+.+.|....+.++ .|++|++||.++++.++++. ...++.++.++++|+.+.++
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe
Confidence 9999988653 456666 999999999988766665 58999999999999999986 46789999999999976655
Q ss_pred eecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee-EeccCcccEEEEE
Q 017642 233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV-RRGADRAEIYSLA 310 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~ 310 (368)
. .+.|.+|+... ..++.+ .....|.+..++|+...+++|++|.. ++.||..+++.+..+ ++ |.++|.|+.
T Consensus 203 ~----gssV~Fwdaksf~~lKs~-k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg--h~gpVhcVr 274 (334)
T KOG0278|consen 203 Y----GSSVKFWDAKSFGLLKSY-KMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG--HFGPVHCVR 274 (334)
T ss_pred c----CceeEEeccccccceeec-cCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC--CCCceEEEE
Confidence 4 46788888765 333333 33456889999999999999999999 999999999998876 44 789999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
|+|||...++|++||+|+||....++..
T Consensus 275 FSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999877665
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-27 Score=207.46 Aligned_cols=233 Identities=15% Similarity=0.247 Sum_probs=205.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
..+-+|.+..|-...+++++|+ |..|+||+.++.+.+ ..|+ .|...+.++.-+|...++.++++| -.|++|
T Consensus 53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV--~~Fe-AH~DyIR~iavHPt~P~vLtsSDD-----m~iKlW 124 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV--KTFE-AHSDYIRSIAVHPTLPYVLTSSDD-----MTIKLW 124 (794)
T ss_pred ecccchhhheeeeccceEEEecCCceEEEEecccceee--EEee-ccccceeeeeecCCCCeEEecCCc-----cEEEEe
Confidence 4456889999999999999999 666999999988877 5675 999999999999999999999998 999999
Q ss_pred eCCCC-cEEEEEe-cCCceeEEEEeeC-ccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 162 DDHQS-RCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 162 d~~~~-~~~~~~~-~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
|.+.+ .+.++++ |..-|.+++|+|. ...++ .|++|+||.+.+..+..++++|...|+++.+-+.|+..++++ |
T Consensus 125 ~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs-g 203 (794)
T KOG0276|consen 125 DWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS-G 203 (794)
T ss_pred eccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe-c
Confidence 98765 7888888 9999999999995 44454 699999999999889999999999999999999998888886 8
Q ss_pred CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
+.|..++||+... .+++++.+|...|..+.|+|.-.++++|++||+ +|||+..+-+....+.- .-..+++++-.+.
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~--gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY--GLERVWCIAAHKG 280 (794)
T ss_pred CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--CCceEEEEeecCC
Confidence 8999999999876 678899999999999999999999999999999 99999888777777665 3468999998888
Q ss_pred CCEEEEEeCCCeE
Q 017642 315 AQWLAVSSDKGTV 327 (368)
Q Consensus 315 ~~~l~s~s~dg~i 327 (368)
++.++.|.+.|.|
T Consensus 281 ~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 281 DGKIAVGFDEGSV 293 (794)
T ss_pred CCeEEEeccCCcE
Confidence 8888888777754
No 53
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-26 Score=187.03 Aligned_cols=241 Identities=15% Similarity=0.245 Sum_probs=193.4
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE--EEEecCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPL 155 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~d~~~~~ 155 (368)
-....|.+.|++++. +|.++|+|+ |.+|+|||+...... ..+. .|...+.++.|.+... .+.++.+|
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql--g~ll-~HagsitaL~F~~~~S~shLlS~sdD----- 106 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL--GILL-SHAGSITALKFYPPLSKSHLLSGSDD----- 106 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh--ccee-ccccceEEEEecCCcchhheeeecCC-----
Confidence 345689999999997 588999999 999999999865554 3333 6788889999987765 78888888
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
|.|.+|+....+++..++ |.+.|+.++++|.+++.+ .|+.+++||+-.|+.-..+... ..-..+.|+|.|+++++
T Consensus 107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVV 185 (362)
T ss_pred CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEE
Confidence 999999999999999999 999999999999999887 6999999999888765555432 23344899999998665
Q ss_pred EeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 311 (368)
.. ...|-+|......+.........+.|+.|- ++.+|++|.+|+. |++||..+..+...+.. |...|.++.+
T Consensus 186 ~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~ 257 (362)
T KOG0294|consen 186 SG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIAS 257 (362)
T ss_pred Ee----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEE
Confidence 43 356667766654443333333557777775 5668999999999 99999999999988888 8899999985
Q ss_pred --ecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 312 --SSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 312 --sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.|++.+|++++.||.|+|||++...+.
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EecCCceEEEEeccCceEEEEEccccccC
Confidence 467889999999999999999887443
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=210.15 Aligned_cols=249 Identities=16% Similarity=0.246 Sum_probs=204.3
Q ss_pred ccCCCCCEEEEEE-cCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 81 SSSPPPTLLHISF-NQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 81 ~~~h~~~v~~~~~-s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
.-+-.+.|..|+| .|+.++||+++ ...+|+|++.+..+. .+ ++|...+.++.-...+.++++++.| +++
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii-~GH~e~vlSL~~~~~g~llat~sKD-----~sv 389 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---II-PGHTEAVLSLDVWSSGDLLATGSKD-----KSV 389 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EE-eCchhheeeeeecccCcEEEEecCC-----ceE
Confidence 3455678888887 57788999999 556999987765554 23 3899999999966667899999998 999
Q ss_pred EEEeCCCCc----EEEEEe-cCCceeEEEEeeCccE-EE---eCCcEEEEEcCCCe---------EEEEEeccCCCeeEE
Q 017642 159 MIWDDHQSR----CIGELS-FRSEVRSVKLRRDRII-VV---LEQKIFVYNFADLK---------LLHQIETIANPKGLC 220 (368)
Q Consensus 159 ~vwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~-l~---~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~ 220 (368)
++|.++.+. ++.... |...|.+++++..+.- ++ .|+++++|++...+ +..+...|...|+++
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 999885442 233334 9999999999876543 33 69999999996521 111234688999999
Q ss_pred EEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642 221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (368)
Q Consensus 221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (368)
+++|+.+ |+++|++|.+.+||+... ....++.+|...|.++.|++..+.|+|++.|++ |+||.+.+..++++|.+
T Consensus 470 aia~ndk---LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 470 AIAPNDK---LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFEG 545 (775)
T ss_pred EecCCCc---eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeecC
Confidence 9999987 444599999999988774 556678999999999999999999999999999 99999999999999999
Q ss_pred ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
|...|..+.|-.+|+.|++++.||.|++|+++++.-......+
T Consensus 546 --H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 546 --HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred --ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 8899999999999999999999999999999998776554443
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-27 Score=186.08 Aligned_cols=239 Identities=15% Similarity=0.168 Sum_probs=190.8
Q ss_pred cCCCCCEEEEEEcCCCC-EE-EEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcE
Q 017642 82 SSPPPTLLHISFNQDHG-CF-AAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~-~l-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i 158 (368)
-.-.+.+..++|++... .+ ++.+|+.++|||+..... ....++ .|...|.++.|+. ++..+++++.| ++|
T Consensus 57 ~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD-----~Ti 129 (311)
T KOG0277|consen 57 YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWD-----GTI 129 (311)
T ss_pred eecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHH-hhhhheEEeccccccceeEEeeccC-----Cce
Confidence 34467899999998654 34 444499999999654333 234454 8899999999986 34455556888 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeCc-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
++|+...++.++++. |...|...+|+|.. .+++ .|+.+++||++.......+..|...+.++.|+.-... +++
T Consensus 130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~- 207 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLA- 207 (311)
T ss_pred EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc-EEE-
Confidence 999999999999998 99999999999964 4444 6999999999764444458889999999999988776 334
Q ss_pred ecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCce-eEeeEeccCcccEEEE
Q 017642 234 PGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSL 309 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l 309 (368)
+|+.|+.|++|+... .++..+.+|.-.|+.|+|||... +|++++.|-+ ++|||...+.. +.++.. |..-+..+
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~ 284 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGL 284 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEecc
Confidence 588999999998776 45667889999999999999765 8999999999 99999986554 334443 78889999
Q ss_pred EEec-CCCEEEEEeCCCeEEEEEc
Q 017642 310 AFSS-NAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 310 ~~sp-~~~~l~s~s~dg~i~iwd~ 332 (368)
.|++ ++.++|+++.|+.++||+-
T Consensus 285 Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccCceeeecccccceeeecc
Confidence 9997 5679999999999999983
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.9e-26 Score=188.60 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=207.6
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
.....|+..|.+++.+|+.+++++|+ |+.-.||++.++... ..+. +|...|.++.|+-++.++++++.+ |.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~elt-gHKDSVt~~~FshdgtlLATGdms-----G~ 129 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELT-GHKDSVTCCSFSHDGTLLATGDMS-----GK 129 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEec-CCCCceEEEEEccCceEEEecCCC-----cc
Confidence 45678999999999999999999999 888999999888755 4454 899999999999999999999998 99
Q ss_pred EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
|+||+..++.....+. .-..+.=+.|+|.+.+++ .||.+.+|.+.++...+.+.+|..++++=.|.|+|++++.
T Consensus 130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t-- 207 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT-- 207 (399)
T ss_pred EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE--
Confidence 9999999999888886 667788899999988887 6999999999988888899999999999999999997443
Q ss_pred ecCCCCeEEEEecCc-ceeeeee---------------------------------------------------ccCcce
Q 017642 234 PGLQKGQVRVEHYAS-KRTKFIM---------------------------------------------------AHDSRI 261 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~-~~~~~~~---------------------------------------------------~~~~~i 261 (368)
|..||+|++|+... .++..+. .+...+
T Consensus 208 -gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 208 -GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred -EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 66899999998653 1111111 122223
Q ss_pred EEEE---ECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 262 ACFA---LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 262 ~~v~---~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.+|. |+..-.+.|+|+.||+ |.|||+...+..+.+. |...|..+.|-+ ..+|++++.+|.|+.||.++++..
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hhhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 3333 3334458899999999 9999999888776666 778899999998 789999999999999999999887
Q ss_pred CCCCCC
Q 017642 339 ARSEPR 344 (368)
Q Consensus 339 ~~~~~~ 344 (368)
-...++
T Consensus 362 ~~y~GH 367 (399)
T KOG0296|consen 362 FTYTGH 367 (399)
T ss_pred EEEecC
Confidence 666655
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.6e-28 Score=197.94 Aligned_cols=242 Identities=15% Similarity=0.244 Sum_probs=203.2
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc-----cCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQ 152 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~d~~ 152 (368)
++..+...-+.|..|+|||++|++|+ |+-|.+||..+++......+. .-+...+.++.|+.+...+++|+.|
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD-- 284 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD-- 284 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC--
Confidence 34455667789999999999999999 888999999877654221111 1356789999999999999999998
Q ss_pred CCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642 153 YPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 153 ~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (368)
|.|++|.+.+|.|++.|. |...|+++.|+.|+..+. .|.++++.-+.+|++++.+.+|..-|+...|.++|.
T Consensus 285 ---GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 285 ---GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred ---CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC
Confidence 999999999999999998 999999999999988777 589999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEecCcc-e--------------------------------------------eeeeec---cCc
Q 017642 228 SLVLVCPGLQKGQVRVEHYASK-R--------------------------------------------TKFIMA---HDS 259 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~~-~--------------------------------------------~~~~~~---~~~ 259 (368)
.++ +++.||+|++|+.... + ++.+.. ..+
T Consensus 362 ~ii---saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 362 HII---SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGG 438 (508)
T ss_pred eEE---EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCC
Confidence 744 3567999999976421 1 111110 122
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
...+...+|.|.++++.++|+. ++.|.+.+|+.-..+.. |...+..++-+|..+.|++-++||.+++|.
T Consensus 439 dFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchhhhcC
Confidence 3445678999999999999999 99999999999999888 788899999999999999999999999995
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=8.8e-27 Score=187.89 Aligned_cols=244 Identities=16% Similarity=0.217 Sum_probs=198.5
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCC----------------CcceEEEcccCCceeEEEEEEeCCeE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF----------------REIFRRDFERGGGIGVVEMLFRCNIL 142 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (368)
..+.|..++.+.+|++||.++|+|+ |..|+|.|++.. .....+++. .|...|..+.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRET 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhh
Confidence 4568999999999999999999999 888999998621 113345555 7888899999999999
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCcE---EEEEecCCceeEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEE---ecc
Q 017642 143 ALVGGGPDPQYPLNKVMIWDDHQSRC---IGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQI---ETI 213 (368)
Q Consensus 143 ~~~s~~~d~~~~~~~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~---~~~ 213 (368)
.++++++| ++|++||+..-.. .+.++....|.++.|+|.|.+++ . ...+++||+++.++...- ..|
T Consensus 186 ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 186 ILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred eEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 99999998 9999999876433 33445778999999999999888 3 458999999998886544 357
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCCCeEEEEec-Ccceeeeee-ccC-cceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIM-AHD-SRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~-~~~-~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
.+.|+++.+++.++. .+ +|+.||.|++|+- ..+++.++. +|. ..|.+..|..+|+|+++.+.|.. +++|++.+
T Consensus 261 t~ai~~V~Ys~t~~l--Yv-TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t 336 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSL--YV-TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEIST 336 (430)
T ss_pred ccceeEEEecCCccE--EE-EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecC
Confidence 788999999999973 33 4889999999774 557777764 465 46899999999999999999999 99999999
Q ss_pred CceeEeeEe-----------------------------------------------ccCcccEEEEEEecCCCEEEEEeC
Q 017642 291 GTLLQEVRR-----------------------------------------------GADRAEIYSLAFSSNAQWLAVSSD 323 (368)
Q Consensus 291 ~~~~~~~~~-----------------------------------------------~~~~~~v~~l~~sp~~~~l~s~s~ 323 (368)
++++.++.+ ..|.+.+..+.-||.+..+++++.
T Consensus 337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 888777653 125677788888888888888888
Q ss_pred CCeEEEEEcc
Q 017642 324 KGTVHVFNLK 333 (368)
Q Consensus 324 dg~i~iwd~~ 333 (368)
|..+|+|--+
T Consensus 417 D~raRFWyrr 426 (430)
T KOG0640|consen 417 DFRARFWYRR 426 (430)
T ss_pred cceeeeeeec
Confidence 8889888643
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=177.88 Aligned_cols=200 Identities=20% Similarity=0.272 Sum_probs=174.0
Q ss_pred EEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCC---CcEEEEEe--cCCceeEEEEeeCccEEE---e
Q 017642 122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ---SRCIGELS--FRSEVRSVKLRRDRIIVV---L 192 (368)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~---~ 192 (368)
+.+. +|...+..++|++. +..|++++.| +.|++|+... -.+...+. |+..|+.++|+|.|++++ .
T Consensus 8 ~~~~-gh~~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 8 QKLS-GHKDRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred Eeec-CCCCcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 4454 77788999999998 8899999998 9999999874 34444554 899999999999999999 6
Q ss_pred CCcEEEEEcCC--CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEE
Q 017642 193 EQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFAL 266 (368)
Q Consensus 193 d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~ 266 (368)
|.++.||.-.. .+++.++++|.+.|.+++|+.+|+. ||+ ++.|..|-||.... .+...+..|...|..+.|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~--LAT-CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY--LAT-CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE--EEE-eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence 99999998653 4789999999999999999999984 554 77999999987663 566778999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEECC---CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 267 TQDGQLLATSSTKGTLVRIFNTL---DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 267 sp~g~~l~s~~~dg~~i~iwd~~---~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+|...+|++++.|.+ |++|+-. ..++++++.+ |...|.+++|++.|..|+++++|++++||.+.
T Consensus 159 HPt~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred cCCcceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999999999999999 9999866 3467888888 77799999999999999999999999999965
No 60
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.4e-25 Score=202.81 Aligned_cols=246 Identities=11% Similarity=0.067 Sum_probs=179.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcce-----------EEEcccCCceeEEEEEEeC-CeEEEEecCCC
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF-----------RRDFERGGGIGVVEMLFRC-NILALVGGGPD 150 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d 150 (368)
|-..|.....++++..+++++ +.....|+...+...+ ...+. +|...|.++.|++ +...+++++.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 334455555666655455444 3335556543221110 01232 7888999999998 77788888888
Q ss_pred CCCCCCcEEEEeCCCC-------cEEEEEe-cCCceeEEEEeeCc-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCee
Q 017642 151 PQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKG 218 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~ 218 (368)
++|++||+.++ +.+..+. |...|.+++|+|++ .+++ .|+.|+|||+++++.+..+..|...|.
T Consensus 98 -----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 98 -----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred -----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999765 3456666 89999999999975 4555 599999999999999999989999999
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcc-eEEEEECCCCCEEEEEe----CCCcEEEEEECCCCc
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSR-IACFALTQDGQLLATSS----TKGTLVRIFNTLDGT 292 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~-i~~v~~sp~g~~l~s~~----~dg~~i~iwd~~~~~ 292 (368)
+++|++++.. +++ |+.|+.|++|+.. ++.+..+.+|.+. +..+.|.+++..|++++ .|+. |++||+++..
T Consensus 173 sla~spdG~l--Lat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~ 248 (493)
T PTZ00421 173 SLEWNLDGSL--LCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMA 248 (493)
T ss_pred EEEEECCCCE--EEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCC
Confidence 9999999974 443 7789999998865 4556677788764 45678999888777654 4788 9999998765
Q ss_pred eeEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCC
Q 017642 293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 293 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~ 339 (368)
.............+....|++++++|++++ .|+.|++||+.+++...
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 333322211334566778999999998887 59999999999876543
No 61
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=6.7e-26 Score=186.04 Aligned_cols=243 Identities=14% Similarity=0.243 Sum_probs=204.1
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
...+|-..|..+++|+-..||.+++ |+.|+.||++..+.+ +.+ ++|-..|.++...|....++++++| ..+
T Consensus 188 tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI--R~Y-hGHlS~V~~L~lhPTldvl~t~grD-----st~ 259 (460)
T KOG0285|consen 188 TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI--RHY-HGHLSGVYCLDLHPTLDVLVTGGRD-----STI 259 (460)
T ss_pred eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH--HHh-ccccceeEEEeccccceeEEecCCc-----ceE
Confidence 4567999999999999999999999 777999999876665 556 4999999999999999999999998 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeC-ccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
+|||+++...+..+. |...|..+.+.|- ..++. .|++|++||++.|+...++..|...+.+++.+|.... +| +
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~--fA-S 336 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL--FA-S 336 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh--hh-c
Confidence 999999999999999 9999999999984 44444 6999999999999999999999999999999998753 44 3
Q ss_pred cCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec------cCcccEE
Q 017642 235 GLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG------ADRAEIY 307 (368)
Q Consensus 235 g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~------~~~~~v~ 307 (368)
++.| .|+-|... +..+..+.+|...|++++...|| ++++|+++|. |.+||.++|...+.+... .....|.
T Consensus 337 as~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~-~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~ 413 (460)
T KOG0285|consen 337 ASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGS-IMFWDWKSGHNYQRGQTIVQPGSLESEAGIF 413 (460)
T ss_pred cCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceE-EEEEecCcCcccccccccccCCcccccccee
Confidence 5544 46666554 45566688999999999998887 7889999999 999999998766554211 1245789
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
+.+|...|..|++|..|.+|++|.-....
T Consensus 414 as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 414 ASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred EEeecccCceEEeccCCcceEEEeccccc
Confidence 99999999999999999999999765443
No 62
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.2e-25 Score=201.27 Aligned_cols=228 Identities=14% Similarity=0.162 Sum_probs=176.9
Q ss_pred ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCc-----ceEEEcccCCceeEEEEEEeCCe-EEEEecCCC
Q 017642 79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD 150 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d 150 (368)
....+|.+.|++++|+| ++.+|++|+ |+.|+|||+..... .....+. +|...|.++.|++.. ..+++++.|
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 34568999999999999 889999999 88899999975432 1223454 788889999999864 577787877
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe-eEEEEecC
Q 017642 151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQG 225 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~ 225 (368)
+.|+|||+.+++.+..+. |...|.+++|++++.+++ .|+.|++||+++++.+..+..|.+.. ..+.|.++
T Consensus 148 -----gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 148 -----MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred -----CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 999999999999988888 899999999999999888 59999999999999988888887643 45778887
Q ss_pred CCeEEEEe-ecCCCCeEEEEecCc--ceeeeeecc-CcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEec
Q 017642 226 VGSLVLVC-PGLQKGQVRVEHYAS--KRTKFIMAH-DSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRG 300 (368)
Q Consensus 226 ~~~~~l~~-~g~~dg~i~i~~~~~--~~~~~~~~~-~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~ 300 (368)
+..++.+. +++.|+.|++|+... ..+.....+ ...+....|++++++|++++ .|+. |++||+.+++.+......
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS 301 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc
Confidence 76533211 124689999999764 223333322 34566678999999998887 5999 999999999877665432
Q ss_pred cCcccEEEEEEecC
Q 017642 301 ADRAEIYSLAFSSN 314 (368)
Q Consensus 301 ~~~~~v~~l~~sp~ 314 (368)
+..++..++|.|.
T Consensus 302 -s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 -SVEPHKGLCMMPK 314 (493)
T ss_pred -CCCCCcceEeccc
Confidence 4456788888884
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.7e-26 Score=211.82 Aligned_cols=253 Identities=16% Similarity=0.153 Sum_probs=202.3
Q ss_pred CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC------C----Cc------ceEEEcccCCceeEEEEEE
Q 017642 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------F----RE------IFRRDFERGGGIGVVEMLF 137 (368)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~~------~~~~~~~~~~~~~~~~~~~ 137 (368)
......-..|.+.|+|+.|++||++||+|+ |+-|.||.... . .. .....+. +|...|.++.|
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~W 137 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNW 137 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceecc
Confidence 344556678999999999999999999999 55599999873 0 00 1223444 89999999999
Q ss_pred eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEecc
Q 017642 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI 213 (368)
Q Consensus 138 ~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~ 213 (368)
+|+..++++++.| ++|.+||..+.+.+..+. |.+.|..+.|.|-|++++ .|++|++|++.+....+.+..+
T Consensus 138 sp~~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 138 SPDDSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred CCCccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence 9999999999998 999999999999999998 999999999999999999 6999999998887777777554
Q ss_pred CC------CeeEEEEecCCCeEEEEeecCCC--CeEEEEec-CcceeeeeeccCcceEEEEECCC-------------CC
Q 017642 214 AN------PKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHY-ASKRTKFIMAHDSRIACFALTQD-------------GQ 271 (368)
Q Consensus 214 ~~------~v~~~~~~~~~~~~~l~~~g~~d--g~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~-------------g~ 271 (368)
.. ....+.|+|||+++...- +-+. ..+.|..+ ..+.-..+-+|..++.++.|+|. ..
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~n-A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPN-AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN 291 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchh-hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence 33 356789999999744332 2222 24555333 33556678899999999999981 11
Q ss_pred ----EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 272 ----LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 272 ----~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
.+|+|+.|++ |-||.....+++.....- ....|.+++|+|||..|.++|.||+|.++.++..+
T Consensus 292 ~~y~i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred cceEEEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 6889999999 999998877776555432 34589999999999999999999999999998743
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=8.7e-26 Score=186.64 Aligned_cols=244 Identities=13% Similarity=0.201 Sum_probs=197.3
Q ss_pred CCcccccCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEecCCCcceE--EEcccCCceeEEEEEEeCCeEEEEecCC
Q 017642 76 PAESTSSSPPPTLLHISFNQD---HGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGP 149 (368)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~~---g~~l~~~~-d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 149 (368)
....+..+|.++|.+++|--. ...|++++ |..+++|.++.++.... ... .+|...|-++.-.+++..+++++.
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC-RGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh-cccccceeEEEecCCCCeEEeecc
Confidence 344567899999998888432 23577777 88999999987665432 122 388999999999999999999999
Q ss_pred CCCCCCCcEEEEeCCC-------------------------CcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEc
Q 017642 150 DPQYPLNKVMIWDDHQ-------------------------SRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNF 201 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~-------------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~ 201 (368)
| ..|+||+..+ +.++.++. |.+.|.++.|.+.+..+. .|.+|+.||+
T Consensus 214 D-----~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 214 D-----TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred c-----ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEe
Confidence 8 9999999321 12445556 999999999999655444 6999999999
Q ss_pred CCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc----eeeeeeccCcceEEEEECCCCC-EEEEE
Q 017642 202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDGQ-LLATS 276 (368)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~i~~v~~sp~g~-~l~s~ 276 (368)
++++.+.++.+ .....++.+++..+ +|++ |+.|..+++|+...+ ....+.+|.+.|.++.|+|... +|++|
T Consensus 289 etg~~~~~~~~-~ksl~~i~~~~~~~--Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 289 ETGGLKSTLTT-NKSLNCISYSPLSK--LLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred ecccceeeeec-CcceeEeecccccc--eeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 99999888764 55788899999765 4555 889999999886652 3456889999999999999765 78899
Q ss_pred eCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 277 STKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 277 ~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+.|++ +++||+++.+ +++.+.+ |...|.++.|. ++..+++|+.|.+|+|+.-.
T Consensus 365 S~D~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 365 SYDNT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ecCCe-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999 9999999887 8999988 78899999997 57789999999999998653
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=204.40 Aligned_cols=240 Identities=20% Similarity=0.317 Sum_probs=203.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
..+|.+.|.+++|..-+.+|++|+ |.+++|||+.++++. ..+. +|...+.++...+ ..+++|+.| .+|+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~~--~~~~sgs~D-----~tVk 314 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTIDP--FLLVSGSRD-----NTVK 314 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEccC--ceEeeccCC-----ceEE
Confidence 679999999999988788999999 999999998887776 5564 7888887776654 445667777 9999
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
+|++.++.++..+. |.+.|+++..+ ...++. .|+.|++||+.++++++.+.+|...|.++.+... + .+. +|+
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~-Sgs 389 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N--RLL-SGS 389 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c--eEE-eee
Confidence 99999999999999 99999999998 333333 6999999999999999999999999999977664 3 233 588
Q ss_pred CCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 237 QKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 237 ~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
.|+.|++|+.... ++..+.+|..-+..+.+ .+++|++++.|+. |++||..++++++.+... |.+.|..+++.
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG-- 463 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--
Confidence 9999999988876 78889999998877765 6789999999999 999999999999999874 45778888876
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCC
Q 017642 315 AQWLAVSSDKGTVHVFNLKVNSGSARS 341 (368)
Q Consensus 315 ~~~l~s~s~dg~i~iwd~~~~~~~~~~ 341 (368)
...+++++.||++++||+++++.....
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cceEEEEecCCeeEEEecccCchhhhh
Confidence 457888899999999999999877644
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-25 Score=188.84 Aligned_cols=240 Identities=19% Similarity=0.276 Sum_probs=194.6
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i 158 (368)
.......|+++.|-.||++||+|+ .+.|+|||+.+ ....+.+. .|...+....|++ ++..++++++| +.+
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd-----~v~ 135 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDD-----KVV 135 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHh-hccCceeEEEecccCCeEEEecCCC-----ceE
Confidence 445678899999999999999999 55599999554 22224554 7888888888887 45667777777 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
++||+.+.....++. |++.|++.+|+|... +++ .||.|++||++.. ..+.++ .|..+|..+.+-|.|.. ++
T Consensus 136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~--ia 212 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSL--IA 212 (487)
T ss_pred EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCE--EE
Confidence 999999988765676 999999999999755 444 6999999999876 566666 48889999999999875 44
Q ss_pred eecCCCCeEEEEecC-cce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 233 CPGLQKGQVRVEHYA-SKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~-~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
++| ...+++|+.. +.. +..+..|...|+|+.+..++..|++|+-|+. |++||+.+.+.++.+. ..++|.+++
T Consensus 213 sAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsia 286 (487)
T KOG0310|consen 213 SAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIA 286 (487)
T ss_pred EcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEE
Confidence 333 4789999987 433 3345559999999999999999999999999 9999999999998888 578999999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.+|+++.++.|..||.+.+=+....++
T Consensus 287 vs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 287 VSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred ecCCCceEEEecccceeeeehhhcccC
Confidence 999999999999999877765544433
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=191.60 Aligned_cols=239 Identities=18% Similarity=0.274 Sum_probs=196.8
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
.+...+..+.|+++.|.++++++++++ |+.+++|+++..+.. .++. +|...+.++.|.-....+++++.| .
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~vVsgs~D-----R 283 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRVVSGSAD-----R 283 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccceeecccc-----c
Confidence 345566777899999999999887777 888999999876655 5565 899999999998777778999988 9
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
+|++||+....|.+++-....+.+|..+ ...++ .|++|++||+++..+...+..+. .|+++.++.++..++ .
T Consensus 284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-s- 358 (459)
T KOG0288|consen 284 TIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-S- 358 (459)
T ss_pred hhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-e-
Confidence 9999999999999998888888888877 23333 68999999999999999887654 899999999998733 3
Q ss_pred ecCCCCeEEEEecCcce-eeeeec----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642 234 PGLQKGQVRVEHYASKR-TKFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~~~-~~~~~~----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (368)
.+.|.++.+.+..+.. ...+.+ .....+.+.|||++.|+++|+.||. |+||++.++++...+........|++
T Consensus 359 -ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 359 -SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITS 436 (459)
T ss_pred -ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEE
Confidence 3689999995555543 333432 1234789999999999999999999 99999999999988887533337999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEE
Q 017642 309 LAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 309 l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
++|+|.|..|++++.++.+.+|.
T Consensus 437 ~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 437 LSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999993
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=190.89 Aligned_cols=239 Identities=15% Similarity=0.204 Sum_probs=194.6
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 84 PPPTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 84 h~~~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
..+.|.+++|+|... -+|+.+.-.+.||+..+.... +.+. .-...+.+..|..++..++.|+.. |.|+|||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~s-rFk~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD 96 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFS-RFKDVVYSVDFRSDGRLLAAGDES-----GHVKVFD 96 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhh--hhHH-hhccceeEEEeecCCeEEEccCCc-----CcEEEec
Confidence 346899999999655 467777778999997654443 3333 445678899999999999999987 9999999
Q ss_pred CCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (368)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~ 237 (368)
.++...++.+. |..+|..+.|+|++..++ .|+.+++||+.+......+.+|.+-|.+.+|+|..++++ .+|+.
T Consensus 97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv--vtGsY 174 (487)
T KOG0310|consen 97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV--VTGSY 174 (487)
T ss_pred cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE--EecCC
Confidence 77766777777 999999999999766555 477999999998887668899999999999999988743 36999
Q ss_pred CCeEEEEecCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEeeEeccCcccEEEEEEecCC
Q 017642 238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNA 315 (368)
Q Consensus 238 dg~i~i~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~ 315 (368)
||.|++|+..... ...--.|..+|..+.+-|.|..+++++.+. |+|||+.+|.. +..+.. |...|+|+++..++
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMFN--HNKTVTCLRLASDS 250 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhhc--ccceEEEEEeecCC
Confidence 9999999987753 223346899999999999999999998764 99999996554 444443 77899999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCC
Q 017642 316 QWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 316 ~~l~s~s~dg~i~iwd~~~~~ 336 (368)
..|++++-|+.+++||+.+-+
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred ceEeecccccceEEEEccceE
Confidence 999999999999999976543
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.2e-27 Score=195.33 Aligned_cols=254 Identities=15% Similarity=0.209 Sum_probs=209.9
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
.......|.+.+..+.|-++...|++|+ |..|++|++...+......+. +....+.++.|+.++..+++.+.|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d----- 240 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASND----- 240 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCC-----
Confidence 3456678999999999999988899988 989999999877766666775 777889999999999888888887
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
+.+++|++...+...++. |.+.|+++.|......++ .|.+|++||+....|.+++.. ...+..++.+ + ..
T Consensus 241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~---~~ 314 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--I---SD 314 (459)
T ss_pred Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--c---ee
Confidence 999999999999999998 999999999988776555 689999999999888877643 3344445554 1 23
Q ss_pred EeecCCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--CcccEEE
Q 017642 232 VCPGLQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYS 308 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~ 308 (368)
+.+|..|++|++|+. .......+..+. .|+++..+.+|..|.+++.|.. +.+.|+++.+....+.... .....+.
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccce
Confidence 346899999999994 456666666655 8999999999999999999999 9999999998887776421 2235889
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
+.|||++.|+++|+.||.|+||++.+++-+......
T Consensus 393 vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred eEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence 999999999999999999999999999877665544
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=203.88 Aligned_cols=242 Identities=19% Similarity=0.302 Sum_probs=202.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
.+...+.+..|. ..++.++. +..|++|+..+..... ..+. +|...+.++.+......+++|+.| .++++|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvW 276 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGSTD-----KTERVW 276 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEecC-----CcEEeE
Confidence 467788899988 44666666 8889999987655542 2254 899999999998777778888887 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg 239 (368)
|..+|++...+. |.+.|.++...+....-. .|.+|++|++++++++..+.+|.++|.++.+. +. +++ +|+.|+
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lv-sgs~d~ 351 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLV-SGSYDG 351 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEE-EEecCc
Confidence 999999999999 999999988766543333 79999999999999999999999999999887 33 244 488999
Q ss_pred eEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCCCE
Q 017642 240 QVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQW 317 (368)
Q Consensus 240 ~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~ 317 (368)
.|++|+.. .+.++.+.+|...|+++.+... .++++|+.|+. |++||+++. +++..+.. |..-+..+.+ .+++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~ 425 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNF 425 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccce
Confidence 99998765 4778889999999999988654 89999999999 999999999 99999998 7777766654 5789
Q ss_pred EEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 318 LAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 318 l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
|++++.|++|++||.++++.....+..
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred eEeccccccEEEeecccCceeeeeccC
Confidence 999999999999999999888766653
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=172.91 Aligned_cols=203 Identities=16% Similarity=0.184 Sum_probs=180.5
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA 202 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~ 202 (368)
.+...+..+.|+.++.+.++++.| .+|++|+...+.+++++. |...|..++.+.|+..++ .|..|.+||++
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 677889999999999999999988 999999999999999999 999999999999988887 58899999999
Q ss_pred CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc---ceeeeeeccCcceEEEEECCCCCEEEEEeCC
Q 017642 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (368)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d 279 (368)
+|+.++.+.+|...|+.+.|+.+.. +++ +|+.|..+++|+... ++++.+......|.+|.. .+..|++|+.|
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~D 164 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESS--VVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVD 164 (307)
T ss_pred cCeeeeecccccceeeEEEecCcce--EEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccC
Confidence 9999999999999999999988775 344 699999999999776 566667777888999988 45689999999
Q ss_pred CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
|+ ++.||++.|+....+.+ .+|+++.|++|++.++.++.|++|++.|-++++-....-++
T Consensus 165 Gt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 165 GT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred Cc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 99 99999999998776665 38999999999999999999999999999999876655544
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=171.41 Aligned_cols=239 Identities=15% Similarity=0.218 Sum_probs=202.2
Q ss_pred ccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
-...+|.+.|-.++|+|. ..+|++++ |+.|++||....++..... ....-+-+.|+|++..++.++.| .
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~----~~~eni~i~wsp~g~~~~~~~kd-----D 128 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE----TKGENINITWSPDGEYIAVGNKD-----D 128 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee----ccCcceEEEEcCCCCEEEEecCc-----c
Confidence 345689999999999875 45777777 8899999998877764433 33444567788999998888887 8
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
.|.+.|.++.+.+.+.+....+..+.|+-++.+++ ..|+|.|......+.++.++.|.....|+.|+|+|++ +|+
T Consensus 129 ~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry--fA~ 206 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY--FAT 206 (313)
T ss_pred cEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCce--Eee
Confidence 99999999999999888888899999997776666 3589999999999999999999998999999999995 554
Q ss_pred ecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642 234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (368)
|+.|..+.+|+.+. -+++.+..+..+|+.+.|+-||++||+|++|.. |-|=++++|..+.+++ +.++...++|+
T Consensus 207 -GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWH 281 (313)
T KOG1407|consen 207 -GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWH 281 (313)
T ss_pred -ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEec
Confidence 88999999988765 566778889999999999999999999999999 9999999999999998 57899999999
Q ss_pred cCCCEEEEEeCC---------CeEEEEEcc
Q 017642 313 SNAQWLAVSSDK---------GTVHVFNLK 333 (368)
Q Consensus 313 p~~~~l~s~s~d---------g~i~iwd~~ 333 (368)
|...+||-+++| |.+++|-+.
T Consensus 282 Pk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 282 PKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999877654 456666543
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.3e-25 Score=188.26 Aligned_cols=247 Identities=13% Similarity=0.173 Sum_probs=188.9
Q ss_pred ccccCCCCCEEEEEEcCCCCEE-EEEe-CCeEEEEEecCCCcceE--------EEcccCCceeEEEEEEeCCe-EEEEec
Q 017642 79 STSSSPPPTLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFR--------RDFERGGGIGVVEMLFRCNI-LALVGG 147 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~s~ 147 (368)
...-.|.+.|+.+.+.|....+ |+++ .+.|.|||..+...... ..+. +|......++|+... ..++++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeec
Confidence 3456899999999999987655 5555 44499999865433221 1333 555556777887643 456677
Q ss_pred CCCCCCCCCcEEEEeCCCCc-------EEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcC--CCeEEEEEecc
Q 017642 148 GPDPQYPLNKVMIWDDHQSR-------CIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA--DLKLLHQIETI 213 (368)
Q Consensus 148 ~~d~~~~~~~i~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~--~~~~~~~~~~~ 213 (368)
+.| +.|++||+.... ....+. |...|..++|++-...++ .|+.+.|||+| +.++.+...+|
T Consensus 197 ~~d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 197 SDD-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred cCC-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence 776 999999987542 233445 999999999999654444 68999999999 55667778899
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCC
Q 017642 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~ 290 (368)
..++.+++|+|.+.. +|| +|+.|++|++|+.+. .++..+.+|...|.+|.|+|+.. +||+++.|+. +.|||+..
T Consensus 272 ~~~vn~~~fnp~~~~-ilA-T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ 348 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEF-ILA-TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSR 348 (422)
T ss_pred CCceeEEEeCCCCCc-eEE-eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccc
Confidence 999999999999975 445 488999999988775 56778999999999999999765 8999999999 99999964
Q ss_pred CceeE------------eeEeccCcccEEEEEEecCCCE-EEEEeCCCeEEEEEccC
Q 017642 291 GTLLQ------------EVRRGADRAEIYSLAFSSNAQW-LAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 291 ~~~~~------------~~~~~~~~~~v~~l~~sp~~~~-l~s~s~dg~i~iwd~~~ 334 (368)
-...+ .|.-+.|...|..+.|+|+..+ |++.++|+.+.||+...
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22111 1332338889999999998875 56778999999999874
No 74
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.5e-25 Score=176.83 Aligned_cols=243 Identities=18% Similarity=0.242 Sum_probs=186.2
Q ss_pred CCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE----EEcc-------------------------
Q 017642 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR----RDFE------------------------- 125 (368)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~----~~~~------------------------- 125 (368)
...+...+|.+.|++++|+.||++|++++ |+.|+||+++....... ..++
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 34567789999999999999999999999 88899999865432110 0000
Q ss_pred ---------------------------cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCc
Q 017642 126 ---------------------------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE 177 (368)
Q Consensus 126 ---------------------------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~ 177 (368)
..|...++.+-...+..++++++.| ..|.+|+++ |+.+..+. ....
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d-----t~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD-----TKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC-----CcEEEEecC-Cceeeeecccccc
Confidence 1234445555556677888888887 999999988 88888887 6667
Q ss_pred eeEEEEeeCccEEEe---CCcEEEEEc---CCC-----eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec
Q 017642 178 VRSVKLRRDRIIVVL---EQKIFVYNF---ADL-----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246 (368)
Q Consensus 178 v~~~~~~~~~~~l~~---d~~i~vwd~---~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~ 246 (368)
-+..+.+|+|++++. --.|++|.+ ++| ..+..+++|...|...+|+++....+. .+.||.++||+.
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt---vSkDG~wriwdt 307 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT---VSKDGKWRIWDT 307 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE---EecCCcEEEeec
Confidence 788899999999994 457999987 333 235567899999999999999987443 568999999987
Q ss_pred Ccce--------eee----eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 247 ASKR--------TKF----IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 247 ~~~~--------~~~----~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
+.+. ++. +..-.+....++++|.|+.||.+... . |+++..++|+...++... |...|.+++|+++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~-l~~~~se~g~~~~~~e~~-h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-D-LKVFASEDGKDYPELEDI-HSTTISSISYSSD 384 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-c-eEEEEcccCccchhHHHh-hcCceeeEEecCC
Confidence 6422 111 11223334589999999988876644 4 999999999888777754 7899999999999
Q ss_pred CCEEEEEeCCCeEEEEE
Q 017642 315 AQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 315 ~~~l~s~s~dg~i~iwd 331 (368)
|+++++++ |+.++++.
T Consensus 385 g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCG-DRYVRVIR 400 (420)
T ss_pred CcEEeeec-ceeeeeec
Confidence 99999986 67788876
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=5.5e-25 Score=181.94 Aligned_cols=244 Identities=14% Similarity=0.198 Sum_probs=191.4
Q ss_pred CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC---CeEEEEecCCC
Q 017642 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPD 150 (368)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d 150 (368)
++.+.....|++.|.++... ++++++|+ |+.+++|+... +.. ..+. +|...+.++.+.- ....+++++.|
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~--~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSI--KTIV-GHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceE--EEEe-cCCcceeeeEEEecCCccceEEEecCC
Confidence 34455566899999999887 77999999 88899999753 333 3333 7777777666643 33358888888
Q ss_pred CCCCCCcEEEEeCCCCcEEEE----E-ecCCceeEEEEeeCccEEE---eCCcEEEEEcCC-------------------
Q 017642 151 PQYPLNKVMIWDDHQSRCIGE----L-SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD------------------- 203 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~------------------- 203 (368)
.++++|-++.++.... - .|...|.++...+++..++ .|..|++|+.++
T Consensus 169 -----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 169 -----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred -----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 9999999887754322 2 3899999999999999888 699999999321
Q ss_pred ------CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642 204 ------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS 277 (368)
Q Consensus 204 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~ 277 (368)
+.++.++.+|..+|..+.|++.+ ++++++.|.+|+.|+........-......+.++..+|..++|++|+
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~----v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDAT----VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCCC----ceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence 12456778999999999999844 45568899999999887655444334456799999999999999999
Q ss_pred CCCcEEEEEECCCCc---eeEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCC
Q 017642 278 TKGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 278 ~dg~~i~iwd~~~~~---~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~ 336 (368)
.|.. |++||.+++. ..+.|.+ |.+.|.++.|+|... .|++++.|+++++||+++.+
T Consensus 320 sdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 320 SDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9999 9999998753 3456666 888999999999654 68899999999999999877
No 76
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.7e-24 Score=193.36 Aligned_cols=219 Identities=10% Similarity=0.101 Sum_probs=165.8
Q ss_pred CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCc--------EEEEEe-c
Q 017642 105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-F 174 (368)
Q Consensus 105 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~--------~~~~~~-~ 174 (368)
++.+++|+..... ....+. +|...|.++.|++. ...+++++.| +.|++||+.++. ++..+. |
T Consensus 53 ~gvI~L~~~~r~~--~v~~L~-gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 53 IGAIRLENQMRKP--PVIKLK-GHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred eeEEEeeecCCCc--eEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecC
Confidence 5568999876543 334554 88899999999986 6788888888 999999997642 234555 8
Q ss_pred CCceeEEEEeeCccEE-E---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-c
Q 017642 175 RSEVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K 249 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l-~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~ 249 (368)
...|.+++|+|++..+ + .|+.|++||+++++.+..+. +...+.+++|+++|.. +++ ++.|+.|+||+... .
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l--Lat-~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL--LSG-TCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE--EEE-EecCCEEEEEECCCCc
Confidence 8999999999988654 3 59999999999998777775 5678999999999984 443 56799999988665 5
Q ss_pred eeeeeeccCcceEE-----EEECCCCCEEEEEeCCC----cEEEEEECCC-CceeEeeEeccCcccEEEEEEecCCCEEE
Q 017642 250 RTKFIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLA 319 (368)
Q Consensus 250 ~~~~~~~~~~~i~~-----v~~sp~g~~l~s~~~dg----~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 319 (368)
.+..+.+|.+.+.+ ..|++++.+|++++.|+ . |+|||+++ ++++..+....+.+.+......++|.+++
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence 56678889876543 33568888999888764 6 99999995 56666555432333344444455688999
Q ss_pred EEeCCCeEEEEEccCCC
Q 017642 320 VSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 320 s~s~dg~i~iwd~~~~~ 336 (368)
+|+.|+.|++|++..+.
T Consensus 280 sGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEECCCeEEEEEccCCc
Confidence 99999999999997653
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=191.08 Aligned_cols=249 Identities=14% Similarity=0.200 Sum_probs=180.9
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE--EEccc--CCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFER--GGGIGVVEMLFRCNILALVGGGPDPQYP 154 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 154 (368)
....|+..|.++++.|.|..|++|+ |..|++||+........ +.+.. .|.+....+....+.++++++.
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------ 235 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------ 235 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------
Confidence 4567788999999999999999999 99999999976543221 22222 3444444444445556666665
Q ss_pred CCcEEEEeCCCCcEEEEE-------------e-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe-EEEEEe----
Q 017642 155 LNKVMIWDDHQSRCIGEL-------------S-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK-LLHQIE---- 211 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~-------------~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~-~~~~~~---- 211 (368)
...+|+| +.|..+.++ + |...+++.+|+|+.+-.+ .||++++||+.+.+ .++.++
T Consensus 236 -aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 236 -AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred -cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 6799999 555444332 2 677899999999765433 69999999997643 333443
Q ss_pred -ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee----eeeeccCc--ceEEEEECCCCCEEEEEeCCCcEEE
Q 017642 212 -TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDS--RIACFALTQDGQLLATSSTKGTLVR 284 (368)
Q Consensus 212 -~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~----~~~~~~~~--~i~~v~~sp~g~~l~s~~~dg~~i~ 284 (368)
+..-+++.|+|++|++. +|+ |..||.|.+|+.....+ ..-.+|.. .|+||.||+||++|++-+.|++ ++
T Consensus 314 ~g~Rv~~tsC~~nrdg~~--iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LK 389 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKL--IAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LK 389 (641)
T ss_pred CCcccCceeeecCCCcch--hhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-ee
Confidence 23346788999999985 454 78999999999755332 23356776 8999999999999999999999 99
Q ss_pred EEECCCC-ceeEeeEeccCcccEEEEEEecCCCEEEEEeC------CCeEEEEEccCCCCCCC
Q 017642 285 IFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 285 iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~ 340 (368)
+||++.. +++....+-....+-+.++|||+.++|++|+. .|++.+||..+-.....
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 9999975 45555444334456788999999999999853 46899999877665433
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=180.58 Aligned_cols=240 Identities=13% Similarity=0.207 Sum_probs=201.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
.....|.++...+....+++|+ |..+.++|....+.. ..+. +|...+..+.++++...+.+++.| ..|+||
T Consensus 217 t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vw 288 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITASAD-----EIIRVW 288 (506)
T ss_pred cCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecCCc-----ceEEee
Confidence 3456889999988877888888 778999998766655 5565 999999999999999999999987 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeec
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
......+..... |.++|+.+..+|.|.|++ .|++.-+.|++++.++..... ..-.+++.+|+|||- +..+|
T Consensus 289 s~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL---ifgtg 365 (506)
T KOG0289|consen 289 SVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL---IFGTG 365 (506)
T ss_pred ccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce---EEecc
Confidence 988776666666 999999999999999998 589999999999988777654 234578899999994 44459
Q ss_pred CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
..||.++||+... ..+..|.+|.++|..|+|+.+|-+|+++++|+. |++||++..+...++... ....+.++.|.+.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQS 443 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCC
Confidence 9999999988766 456678999999999999999999999999999 999999999888888764 3347999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCC
Q 017642 315 AQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 315 ~~~l~s~s~dg~i~iwd~~~~ 335 (368)
|.+|+.++.|=.|++++-.+.
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred CCeEEeecceeEEEEEecccc
Confidence 999999987766666664443
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7e-26 Score=186.19 Aligned_cols=248 Identities=15% Similarity=0.226 Sum_probs=187.1
Q ss_pred cccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC------
Q 017642 80 TSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------ 151 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~------ 151 (368)
...+|.+.|.|++=+|.. ..+++|+ ||.|+|||+....+. ..+. .|...|..++++.+ .++++++|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~~--~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQT--SFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEeccc--ceEEecCCcceeeee
Confidence 347999999999999987 6788998 999999999866555 4554 77777777777663 333333330
Q ss_pred -------------------------CC--CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEE
Q 017642 152 -------------------------QY--PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVY 199 (368)
Q Consensus 152 -------------------------~~--~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vw 199 (368)
.| ....|.|||.....++..+. ....|.++.|+|-...++ +|+.|.||
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 00 01236666666666777777 667789999999765544 69999999
Q ss_pred EcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSS 277 (368)
Q Consensus 200 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~ 277 (368)
|++++.+++.+.. ...-+.++|+|.+- .++ +|++|..++.++... ..+....+|...|..+.|+|.|+-+++|+
T Consensus 216 D~R~~~Pl~KVi~-~mRTN~IswnPeaf--nF~-~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 216 DLRQASPLKKVIL-TMRTNTICWNPEAF--NFV-AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred ecccCCccceeee-eccccceecCcccc--cee-eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 9999988876642 33446799999443 233 478999999855443 56677889999999999999999999999
Q ss_pred CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.|.+ |+||..+.+...-.+... .-..|.++.||.|.+++++||+|+.|++|...-.++.
T Consensus 292 yDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 292 YDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ccce-EEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 9999 999999887665444322 2357999999999999999999999999987655443
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=184.38 Aligned_cols=250 Identities=16% Similarity=0.196 Sum_probs=210.7
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc---eEE------E-----cc-cCCceeEEEEEEeCCe
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI---FRR------D-----FE-RGGGIGVVEMLFRCNI 141 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~---~~~------~-----~~-~~~~~~~~~~~~~~~~ 141 (368)
......|.-.|.+|+++|++++..+++ ++.|.-|++.++... ... . .. ..|...+++++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 567788999999999999999999999 888999998765532 111 0 00 1677889999999999
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK 217 (368)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v 217 (368)
.++++++.| ..|.||+..+.+.++.+. |.+.|.+++|-.....+. .|..|++|++.....+.++.+|.+.|
T Consensus 215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 999999998 999999999999999988 999999999987544333 79999999999988888999999999
Q ss_pred eEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (368)
..+....-++ +++.|..|+++++|.........+.+|.+.+.|++|-.+ .++++|+.+|. |.+|++.+.+++...
T Consensus 290 ~~IdaL~reR---~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 290 LGIDALSRER---CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTS 364 (479)
T ss_pred eeechhcccc---eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEe
Confidence 8887766665 444588999999999988777888999999999999854 57999999999 999999999888776
Q ss_pred Eecc----------CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 298 RRGA----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 298 ~~~~----------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
+..+ +...|++++..|...++++|+.+|.|++|.+.++-+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 5421 112789999999999999999999999999998844
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.5e-25 Score=171.79 Aligned_cols=236 Identities=18% Similarity=0.199 Sum_probs=180.4
Q ss_pred EEEEEcC--CCCEE-EEE------eCCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCCC
Q 017642 89 LHISFNQ--DHGCF-AAG------TDHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLN 156 (368)
Q Consensus 89 ~~~~~s~--~g~~l-~~~------~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~~ 156 (368)
+++.||| ++++. |++ +.+.+.|.++...+. .....+ .-.....+++|+++ ..+++.. .| |
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~Wse~~e~~~~~a~-GD-----G 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY--DTEDGLFDVAWSENHENQVIAAS-GD-----G 83 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee--ecccceeEeeecCCCcceEEEEe-cC-----c
Confidence 5678888 33332 222 234488888863333 333444 45566778888764 3344443 33 9
Q ss_pred cEEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642 157 KVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 157 ~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
.+++||+.. ..++..++ |...|.++.|++-.+..+ .|++|++|+...++.++++.+|...|....|+|....++
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 999999643 36778888 999999999999544433 599999999999999999999999999999999988754
Q ss_pred EEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEE
Q 017642 231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIY 307 (368)
Q Consensus 231 l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~ 307 (368)
.. .+.|+.+++|+.+. .....+..|...|.|+.|+. +.++|+||+.|+. |++||+++. .++.++.+ |.-.|.
T Consensus 164 as--~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVR 238 (311)
T KOG0277|consen 164 AS--ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVR 238 (311)
T ss_pred EE--ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEE
Confidence 43 56799999988654 33344889999999999997 4568999999999 999999975 46777766 788999
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEEccCCCC
Q 017642 308 SLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 308 ~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.+.|||.. .+|++++.|-++||||...+..
T Consensus 239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred EEecCcchhhHhhhccccceEEecccccchh
Confidence 99999965 5789999999999999976544
No 82
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.5e-23 Score=192.05 Aligned_cols=228 Identities=12% Similarity=0.163 Sum_probs=171.3
Q ss_pred ccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcc------eEEEcccCCceeEEEEEEeCCeE-EEEecCC
Q 017642 79 STSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREI------FRRDFERGGGIGVVEMLFRCNIL-ALVGGGP 149 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~ 149 (368)
....+|.+.|.+++|+|+ +.+|++|+ |+.|+||++...... ....+. +|...+.++.|+|++. ++++++.
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeC
Confidence 345689999999999997 78999999 888999999754321 112343 7788899999999765 4567777
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEE-----
Q 017642 150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA----- 221 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~----- 221 (368)
| +.|++||+.+++.+..+.+...|.+++|+++|.+++ .|+.|+|||+++++.+..+.+|.+.+....
T Consensus 147 D-----gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 147 D-----SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred C-----CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 7 999999999999888888888999999999999988 489999999999999999988887654433
Q ss_pred EecCCCeEEEEeecCCC---CeEEEEecCc--ceeeeee--ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642 222 VSQGVGSLVLVCPGLQK---GQVRVEHYAS--KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (368)
Q Consensus 222 ~~~~~~~~~l~~~g~~d---g~i~i~~~~~--~~~~~~~--~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~ 294 (368)
|+++++. ++++|..+ +.|+||+... ..+..+. .+.+.+......++|.++++|+.|+. |++|++..+. +
T Consensus 222 fs~d~~~--IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~ 297 (568)
T PTZ00420 222 LGGDDNY--ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-I 297 (568)
T ss_pred EcCCCCE--EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-E
Confidence 3466664 44434333 4799999773 3343332 23334444444556889999999999 9999998764 3
Q ss_pred EeeEeccCcccEEEEEEecCCC
Q 017642 295 QEVRRGADRAEIYSLAFSSNAQ 316 (368)
Q Consensus 295 ~~~~~~~~~~~v~~l~~sp~~~ 316 (368)
..+....+..++.+++|.|+..
T Consensus 298 ~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 298 RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EeecccccCCCccceEEccccc
Confidence 4454444567889999999653
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-23 Score=168.83 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=191.3
Q ss_pred cccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
+.+....++.|.+|+|||. ..+|++|+ |+.||+|+++......-+.. ..+...+++++|+.++..+++++.|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-~~~~~PvL~v~WsddgskVf~g~~D----- 93 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-QSHDGPVLDVCWSDDGSKVFSGGCD----- 93 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-hccCCCeEEEEEccCCceEEeeccC-----
Confidence 4445566789999999995 44555777 99999999987433222223 3788999999999999988888887
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc--EEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
+.+++||+.+++....-.|.++|..+.|-+... .|+ .|++|+.||++...++.++... ..+.++.. -.. +
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~p--m 168 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYP--M 168 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCc--e
Confidence 999999999997766666999999999988765 555 6999999999998888887643 34443332 222 2
Q ss_pred EEeecCCCCeEEEEecCccee--eeee-ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeEeeEeccC---
Q 017642 231 LVCPGLQKGQVRVEHYASKRT--KFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGAD--- 302 (368)
Q Consensus 231 l~~~g~~dg~i~i~~~~~~~~--~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~--- 302 (368)
++. +..+..|.++....... +.++ .-...++||+..+|....+.|+-+|. +-|..+..+ +.-..|+.|..
T Consensus 169 ~vV-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 169 AVV-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred eEE-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCC
Confidence 222 34578888877654321 1121 23445889999998888899999999 999988876 44445555321
Q ss_pred ----cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCCC
Q 017642 303 ----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS 347 (368)
Q Consensus 303 ----~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (368)
-..|++|+|+|.-..|++++.||++.+||-+...+....+.....
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qp 295 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQP 295 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCc
Confidence 125788999999999999999999999999888887776665443
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-25 Score=194.57 Aligned_cols=229 Identities=17% Similarity=0.289 Sum_probs=191.6
Q ss_pred CCCCEEEEEe-CCeEEEEEecCCCcc----eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC--c
Q 017642 95 QDHGCFAAGT-DHGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--R 167 (368)
Q Consensus 95 ~~g~~l~~~~-d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~--~ 167 (368)
|.+++|.+|+ |+.|++|++...... +...++ .|...+.++....++..+++++.| -+|++|+...+ -
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsD-----tTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSD-----TTVKVWNAHKDNTF 108 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCC-----ceEEEeecccCcch
Confidence 5677899998 888999998654432 334554 788888888888888888888887 99999998877 5
Q ss_pred EEEEEe-cCCceeEEEE-eeCccEEE---eCCcEEEEEcCCCe--EEEE--------Ee-ccCCCeeEEEEecCCCeEEE
Q 017642 168 CIGELS-FRSEVRSVKL-RRDRIIVV---LEQKIFVYNFADLK--LLHQ--------IE-TIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 168 ~~~~~~-~~~~v~~~~~-~~~~~~l~---~d~~i~vwd~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~~~l 231 (368)
+..++. |.+.|.|+++ .++..+++ .|+.|++||++++. .+.. +. ++...+.+++.++.|. ++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~i 186 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT--II 186 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce--EE
Confidence 677777 9999999999 66777777 59999999999772 2222 22 5667888899988883 34
Q ss_pred EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
+ +|+..+.+++|+... +.+..+.+|...|..+..+.||+.+++++.||+ |++||+...+++.++.. |...|+++.
T Consensus 187 v-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e~VWaL~ 262 (735)
T KOG0308|consen 187 V-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKEGVWALQ 262 (735)
T ss_pred E-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccCceEEEe
Confidence 4 588899999988665 667778999999999999999999999999999 99999999999999988 777899999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
.+|+=..+++|+.||.|..=|+.+.
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999999885
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=5.6e-25 Score=172.45 Aligned_cols=201 Identities=19% Similarity=0.326 Sum_probs=169.0
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
+-.|..-|.+++|+.|.++|++|+ ++-+||||++..+... ..+. +|...|..+.|......+++..+| ++||
T Consensus 96 sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~-ghtg~Ir~v~wc~eD~~iLSSadd-----~tVR 168 (334)
T KOG0278|consen 96 SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEIS-GHTGGIRTVLWCHEDKCILSSADD-----KTVR 168 (334)
T ss_pred hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhc-CCCCcceeEEEeccCceEEeeccC-----CceE
Confidence 457888999999999999999999 7779999998655432 3444 888899999988777777776776 9999
Q ss_pred EEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642 160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (368)
Q Consensus 160 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~ 237 (368)
+||.++++.++++..+..|+++.++++|+++. ..+.|..||..+...++.++. ...|.+..++|+.. ++++ |++
T Consensus 169 LWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~--~fVa-Gge 244 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKE--FFVA-GGE 244 (334)
T ss_pred EEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCc--eEEe-cCc
Confidence 99999999999999999999999999999988 567999999999998888764 45678889999885 3444 789
Q ss_pred CCeEEEEecCc-ceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642 238 KGQVRVEHYAS-KRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (368)
Q Consensus 238 dg~i~i~~~~~-~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~ 293 (368)
|..++.+++.. ..+..+ ++|.++|.|+.|+|+|...++|++||+ |+||.+..++.
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~ 301 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKT 301 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCc
Confidence 99999866554 444443 899999999999999999999999999 99999866553
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.6e-25 Score=190.40 Aligned_cols=210 Identities=17% Similarity=0.237 Sum_probs=175.7
Q ss_pred cCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEE
Q 017642 126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVY 199 (368)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vw 199 (368)
++|...+.++.|.+ .+.++++++.| +.|+||++.. +++++++. |..+|.+++|+.+|..+. .|+.|++|
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD-----~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMD-----GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCC-----ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 48999999999998 78888999998 9999999876 89999998 999999999999998877 69999999
Q ss_pred EcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeC
Q 017642 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSST 278 (368)
Q Consensus 200 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~ 278 (368)
|+++|+++..+.. ....+++.|+|++.+++|+ |..|+.|+.|+... +.++.+..|-+.|..+.|-++|+++++.++
T Consensus 286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred ccccceEEEEEec-CCCceeeecCCCCCcEEEE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999863 4577899999999765554 67899999977654 666778889999999999999999999999
Q ss_pred CCcEEEEEECCCCcee----------------------------------------------EeeEeccCcccEEEEEEe
Q 017642 279 KGTLVRIFNTLDGTLL----------------------------------------------QEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 279 dg~~i~iwd~~~~~~~----------------------------------------------~~~~~~~~~~~v~~l~~s 312 (368)
|+. ++||+.+..-.+ ..+.++.-.+.-..+.||
T Consensus 363 dks-~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 363 DKS-VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred Ccc-EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 999 999997543111 112222223556789999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 313 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
|||.+|++|+.||.+.+||.++.+.......+
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 99999999999999999999998776655444
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-22 Score=157.19 Aligned_cols=239 Identities=16% Similarity=0.251 Sum_probs=189.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC------C----Cc---ceEEEcccCCceeEEEEEEeCCeEEEEecCC
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------F----RE---IFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 149 (368)
....|.+++|+|.|.+.++|+ .++++|-.... . .. +.-+.- ..|...+.+.+|++.+..+++++.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~-khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN-KHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec-cccCccEEEEEecCccCeEEecCC
Confidence 345899999999999999999 66666643211 0 00 111112 367888999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCCcE-----EEEEe-cCCceeEEEEeeC----ccEEE----eCCcEEEEEcCCCeEEEEEeccCC
Q 017642 150 DPQYPLNKVMIWDDHQSRC-----IGELS-FRSEVRSVKLRRD----RIIVV----LEQKIFVYNFADLKLLHQIETIAN 215 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~-----~~~~~-~~~~v~~~~~~~~----~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~ 215 (368)
| ..|++.-.+...+ -.++. |.+.|+.++|..+ +.+++ .|..|++-|...|+..+.+.+|.+
T Consensus 110 d-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 110 D-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred C-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 8 9999987654432 23455 9999999999764 55666 477899999999999999999999
Q ss_pred CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeec--c-----CcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMA--H-----DSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (368)
Q Consensus 216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~--~-----~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd 287 (368)
.|..+ +++++- +..+|++|.+|++|+.... .+.++.. | ...|.+++..|.|++|++|-.|.. ..+||
T Consensus 185 hilal-yswn~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lyd 259 (350)
T KOG0641|consen 185 HILAL-YSWNGA---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYD 259 (350)
T ss_pred cEEEE-EEecCc---EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEE
Confidence 88754 566664 3446999999999987753 3333321 2 256899999999999999999999 99999
Q ss_pred CCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
++.++.++.+.. |...|.++.|+|...+|++++.|..|++=|++-.
T Consensus 260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 999999999987 8899999999999999999999999999999754
No 88
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-24 Score=168.03 Aligned_cols=249 Identities=16% Similarity=0.182 Sum_probs=194.3
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY 153 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~ 153 (368)
..+-+.|.+.|..+...--|++||+++ |+.|+|+.+.+... ....++. +|...+..+.|.. -+.+|++++.|
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYD--- 79 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYD--- 79 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecC---
Confidence 345678999999999888899999999 99999999987665 5556776 9999999999865 67899999998
Q ss_pred CCCcEEEEeCCCCcEEE--EEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCC---eEEEEEeccCCCeeEEEE
Q 017642 154 PLNKVMIWDDHQSRCIG--ELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAV 222 (368)
Q Consensus 154 ~~~~i~vwd~~~~~~~~--~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~ 222 (368)
|+|.||.-..++-.+ ++. |...|++++|.|. |..|+ .||.|.|.+.++. ...+....|.-.+++++|
T Consensus 80 --gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 80 --GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred --ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 999999977774433 334 8999999999996 44555 7999999998653 123344678888999999
Q ss_pred ecC---CC--------e-EEEEeecCCCCeEEEEecCc---ceeeeeeccCcceEEEEECCCC----CEEEEEeCCCcEE
Q 017642 223 SQG---VG--------S-LVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLV 283 (368)
Q Consensus 223 ~~~---~~--------~-~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~v~~sp~g----~~l~s~~~dg~~i 283 (368)
.|. |. . .-++ +|+.|..|+||..+. ..-+++.+|.+.|+.++|.|.- .+||+++.||+ |
T Consensus 158 apa~~~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-v 235 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-V 235 (299)
T ss_pred cCcCCCccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-E
Confidence 886 31 0 1244 477899999998887 5556689999999999999964 38999999999 9
Q ss_pred EEEECCCC-ce-eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 284 RIFNTLDG-TL-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 284 ~iwd~~~~-~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
.||-.... +. ..++.. .....++.+.||..|+.|++++.|+.|.+|.-...
T Consensus 236 iIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 99976521 11 111111 13457999999999999999999999999976543
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-22 Score=154.82 Aligned_cols=246 Identities=11% Similarity=0.131 Sum_probs=188.7
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcce---EEEcccCCceeEEEEEEeC----CeEEEEecCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRC----NILALVGGGP 149 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~ 149 (368)
......|.+.|+|.+|+|+|++|++|+ |+.|++...+...+.. ..+|. -|...+.+++|-. .+..+++++.
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC
Confidence 345668999999999999999999999 8889887665433221 12343 5677788888743 4556666554
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec--c-----CCCee
Q 017642 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET--I-----ANPKG 218 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~--~-----~~~v~ 218 (368)
. |..|++-|..+|+..+.+. |.+.|.++- +=++-.++ .|.+|++||++-..++.++.. | ...|.
T Consensus 161 g----dc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 161 G----DCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred C----cceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 2 2778888999999999988 999988773 33455555 589999999998888887742 1 24678
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeE
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQ 295 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~ 295 (368)
.+++.|.|+ +++ +|..|....+++.. ++.++.+..|...|+|+.|+|...||++++.|.. |++-|+... +.+.
T Consensus 236 av~vdpsgr--ll~-sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 236 AVAVDPSGR--LLA-SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELP 311 (350)
T ss_pred EEEECCCcc--eee-eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCc
Confidence 899999997 345 58889999995554 5788899999999999999999999999999999 999998532 1111
Q ss_pred eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
.+....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 312 ~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 22223377888899999999889999999999999764
No 90
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=8.2e-25 Score=177.69 Aligned_cols=210 Identities=17% Similarity=0.262 Sum_probs=178.6
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe---------cCCceeEEEEeeCccEEE---eCC
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---------FRSEVRSVKLRRDRIIVV---LEQ 194 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~---~d~ 194 (368)
+....+-+..|+|++.++++++.| |-|.+||..+|+..+.++ +...|.|+.|+.|...++ .||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvD-----GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVD-----GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccccchhheeeCCCCceEeecccc-----ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 556667788999999999999998 999999999987665442 678999999999999998 599
Q ss_pred cEEEEEcCCCeEEEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCE
Q 017642 195 KIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQL 272 (368)
Q Consensus 195 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~ 272 (368)
.|++|.+++|.|++.|. .|...|+++.|+.|+..++ +++.|.++++ -...++.++.+.+|...|+...|.+||.+
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL---S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL---SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH 362 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh---cccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence 99999999999999996 7999999999999998743 4778999999 66778899999999999999999999999
Q ss_pred EEEEeCCCcEEEEEECCCCceeEeeEe--------------------------------------------c-cCcccEE
Q 017642 273 LATSSTKGTLVRIFNTLDGTLLQEVRR--------------------------------------------G-ADRAEIY 307 (368)
Q Consensus 273 l~s~~~dg~~i~iwd~~~~~~~~~~~~--------------------------------------------~-~~~~~v~ 307 (368)
+++++.||+ |+||+.++.+++.+|+. + ...+...
T Consensus 363 iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 363 IISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred EEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceE
Confidence 999999999 99999987766555442 1 1223455
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCC
Q 017642 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS 345 (368)
Q Consensus 308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 345 (368)
+.+.+|.|.++.+.++|+.++.|.+.+++-+....-+.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 66789999999999999999999999998776555443
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=3.4e-23 Score=192.28 Aligned_cols=247 Identities=19% Similarity=0.217 Sum_probs=198.8
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCc----------ceEEEcccCCceeEEEEEEeCCeEEEEecC
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFRE----------IFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 148 (368)
..+...|.++..+|||..+|+|+ |++++||+.+.... ...... ..|...+.++.|++++.++++|+
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeecc
Confidence 34555799999999999999998 77888999754221 111122 37888999999999999999999
Q ss_pred CCCCCCCCcEEEEeCCC------------------CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE
Q 017642 149 PDPQYPLNKVMIWDDHQ------------------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL 206 (368)
Q Consensus 149 ~d~~~~~~~i~vwd~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~ 206 (368)
+| +.|.||+... .+++..+. |...|..++|+|++.+++ .|++|.+||.+++++
T Consensus 89 DD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 89 DD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred Cc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence 98 9999998662 13556666 999999999999999999 699999999999999
Q ss_pred EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeecc------CcceEEEEECCCCCEEEEEeC-
Q 017642 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAH------DSRIACFALTQDGQLLATSST- 278 (368)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~------~~~i~~v~~sp~g~~l~s~~~- 278 (368)
+..+++|...|..+.|.|-|++ +|+ -+.|++|+||... ....+.+.++ ......+.|+|||++|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky--~AS-qsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKY--FAS-QSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeeecccccccceEECCccCe--eee-ecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 9999999999999999999995 554 6689999999844 3455555443 235788999999999998643
Q ss_pred ---CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC-----CC------------EEEEEeCCCeEEEEEccCCCCC
Q 017642 279 ---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQ------------WLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 279 ---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~------------~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
-.. +.|.+..+.+.-..|.+ |.+++.++.|+|. .+ .+|+|+.|++|-||.....++.
T Consensus 241 n~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 241 NGGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred cCCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 224 89999888887788888 7889999999872 11 6788999999999999766654
Q ss_pred CC
Q 017642 339 AR 340 (368)
Q Consensus 339 ~~ 340 (368)
-.
T Consensus 318 ~v 319 (942)
T KOG0973|consen 318 FV 319 (942)
T ss_pred hh
Confidence 33
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6.3e-23 Score=165.63 Aligned_cols=243 Identities=19% Similarity=0.301 Sum_probs=188.3
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
...-.|..++++++|.++.+ +++|+ |+.|+++|+++...... ..|...+.++.+....-.+++++.| ++
T Consensus 48 ~~~~~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~i----gth~~~i~ci~~~~~~~~vIsgsWD-----~~ 117 (323)
T KOG1036|consen 48 KLKFKHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQI----GTHDEGIRCIEYSYEVGCVISGSWD-----KT 117 (323)
T ss_pred hhheecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceee----ccCCCceEEEEeeccCCeEEEcccC-----cc
Confidence 34457888999999998655 55555 99999999998766532 2688888999998877888999998 99
Q ss_pred EEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEE--eccCCCeeEEEEecCCCeEEEEee
Q 017642 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 158 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
|++||.+....+..+.....|.++....+..++. .|..+.+||+++....... ......+.++++-|++...++
T Consensus 118 ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--- 194 (323)
T KOG1036|consen 118 IKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--- 194 (323)
T ss_pred EEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE---
Confidence 9999998877777777777999999988777665 7999999999886543322 123456789999997776432
Q ss_pred cCCCCeEEEEecC-c----ceeeeeeccCc---------ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642 235 GLQKGQVRVEHYA-S----KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (368)
Q Consensus 235 g~~dg~i~i~~~~-~----~~~~~~~~~~~---------~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (368)
++-||.|.+...+ . .....++.|.. +|++|+|+|-...||||+.||. |.+||+.+.+.+..+..
T Consensus 195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~- 272 (323)
T KOG1036|consen 195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAK- 272 (323)
T ss_pred EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccC-
Confidence 5689999993222 2 33345666643 7999999999889999999999 99999999999988887
Q ss_pred cCcccEEEEEEecCCCEEEEEeC-----CCe-------EEEEEccCCCC
Q 017642 301 ADRAEIYSLAFSSNAQWLAVSSD-----KGT-------VHVFNLKVNSG 337 (368)
Q Consensus 301 ~~~~~v~~l~~sp~~~~l~s~s~-----dg~-------i~iwd~~~~~~ 337 (368)
....|.+++|+.||..||.++. ... |.|.++.+.+.
T Consensus 273 -~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e~ 320 (323)
T KOG1036|consen 273 -YETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYET 320 (323)
T ss_pred -CCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecccccc
Confidence 5678999999999999998863 122 66666655444
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.7e-24 Score=183.96 Aligned_cols=235 Identities=11% Similarity=0.207 Sum_probs=202.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
..+-|.++.+.|||+.|++|+ -.++.|||+......+...+. ...-.+.+++.+++..+.+++..| |.|.|||
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsd-----GnI~vwD 537 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSD-----GNIAVWD 537 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccC-----CcEEEEE
Confidence 456788999999999999999 555999999877666555554 455567788889988888887777 9999999
Q ss_pred CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (368)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d 238 (368)
+.+...++.|+ |.+.+.||.+++||..+. .|++|+.||+++++.+.... ....|.++..+|.+++++ . |..+
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWla--v-GMen 613 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLA--V-GMEN 613 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcccee--e-eccc
Confidence 99999999999 999999999999999888 68999999999988766543 456788899999999744 3 7788
Q ss_pred CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEE
Q 017642 239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (368)
Q Consensus 239 g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 318 (368)
+.+.|-..++.....+.-|+..|.++.|.+.|+++++.+.|.. +..|.+.-|..+...+ ....|.++.+|-|.+++
T Consensus 614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYI 689 (705)
T ss_pred CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEE
Confidence 9998877777777788899999999999999999999999999 9999999898887776 46789999999999999
Q ss_pred EEEeCCCeEEEEEc
Q 017642 319 AVSSDKGTVHVFNL 332 (368)
Q Consensus 319 ~s~s~dg~i~iwd~ 332 (368)
++|+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888876
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.6e-22 Score=163.27 Aligned_cols=245 Identities=14% Similarity=0.163 Sum_probs=183.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
.+.+.|.+|.|+|.+..|++++ |+.+++|++...... ..+ .+...+++++|.+....+.++ -| |.|+.+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~--~~~~plL~c~F~d~~~~~~G~-~d-----g~vr~~ 80 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKF--KHGAPLLDCAFADESTIVTGG-LD-----GQVRRY 80 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhe--ecCCceeeeeccCCceEEEec-cC-----ceEEEE
Confidence 3467899999999888887777 999999999876444 445 577889999998866655554 44 999999
Q ss_pred eCCCCcEEEEEecCCceeEEEEeeC-ccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642 162 DDHQSRCIGELSFRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (368)
Q Consensus 162 d~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d 238 (368)
|+++++....-.|...|.++.+.+. +.++. .|++|++||.+.......+.. ...|.++. -.++.+++ |..+
T Consensus 81 Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~--v~g~~LvV---g~~~ 154 (323)
T KOG1036|consen 81 DLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD--VSGNRLVV---GTSD 154 (323)
T ss_pred EecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEe--ccCCEEEE---eecC
Confidence 9999988877779999999999975 44444 799999999987555555543 33555444 45665444 4478
Q ss_pred CeEEEEecCcce-eee--eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----ceeEeeEeccC-------cc
Q 017642 239 GQVRVEHYASKR-TKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGAD-------RA 304 (368)
Q Consensus 239 g~i~i~~~~~~~-~~~--~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~~~~-------~~ 304 (368)
..+.+|+...-. ... -..-+-.++||++-|++.=+++++-||+ |.+=.+... +..+.|+.|.. --
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 999997765422 211 1223456899999998888899999998 777655544 34445555211 13
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
+|++|+|+|-.+.|++|+.||.|-+||+.+.++..+....
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 7999999999999999999999999999999988776655
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.4e-23 Score=164.41 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=181.1
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL 155 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~ 155 (368)
.....|.++|.+++|+.||..+++|+ |+.+++||+.+++... +. .|...+..+.|-+. ...|++|+.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~---v~-~Hd~pvkt~~wv~~~~~~cl~TGSWD----- 136 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ---VA-AHDAPVKTCHWVPGMNYQCLVTGSWD----- 136 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee---ee-ecccceeEEEEecCCCcceeEecccc-----
Confidence 55668999999999999999999888 9999999999875442 22 56666666666554 5599999999
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEE-EE-eccCCCeeEEEEecCCCeEEEE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLH-QI-ETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
++|++||.+...++.++...+.++++..-..-..++ .+..|.+|+++++.... .+ ......+++++...+.+..+|
T Consensus 137 KTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al- 215 (347)
T KOG0647|consen 137 KTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL- 215 (347)
T ss_pred cceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe-
Confidence 999999999999999999999999998876666666 79999999997764321 11 123346788999999887543
Q ss_pred eecCCCCeEEE-EecCc--ceeeeeeccCc---------ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642 233 CPGLQKGQVRV-EHYAS--KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (368)
Q Consensus 233 ~~g~~dg~i~i-~~~~~--~~~~~~~~~~~---------~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (368)
|+-+|.+.| +.... ..-..++.|.. .|++|+|+|....|++++.||+ +.+||-.....+.+...
T Consensus 216 --GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~- 291 (347)
T KOG0647|consen 216 --GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET- 291 (347)
T ss_pred --eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc-
Confidence 778999998 33332 34445666763 4788999998889999999999 99999877777777776
Q ss_pred cCcccEEEEEEecCCCEEEEE
Q 017642 301 ADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 301 ~~~~~v~~l~~sp~~~~l~s~ 321 (368)
|..+|++.+|+.+|.+++-+
T Consensus 292 -~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 292 -HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred -CCCccceeEecCCCCEEEEE
Confidence 78999999999999998765
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.8e-23 Score=176.31 Aligned_cols=247 Identities=13% Similarity=0.158 Sum_probs=197.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc-eEEEcc-cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI-FRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
.-.|..-|.++++|...+++.+|+.+.|+|||+...... -...+. ......+.++...+++..++.|+.- .+|
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stl 489 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STL 489 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----cee
Confidence 346888888899999999999999999999999643321 111111 1355667788888888888887775 899
Q ss_pred EEEeCCCCcEEE--EEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 159 MIWDDHQSRCIG--ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 159 ~vwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
.|||+....... ++. ..-..++++.+||.++.+ .||.|.|||+.+...++.|++|.+.+.|+.+++||..++
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-- 567 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-- 567 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee--
Confidence 999998665433 333 345678899999998887 799999999999999999999999999999999998755
Q ss_pred eecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (368)
+|+-|.+||.|+........-......|.++..+|++.+|+.|-+++. +.|......+ .+.+.. |...|.++.|.
T Consensus 568 -TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~-kyqlhl--heScVLSlKFa 642 (705)
T KOG0639|consen 568 -TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPE-KYQLHL--HESCVLSLKFA 642 (705)
T ss_pred -cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCcc-ceeecc--cccEEEEEEec
Confidence 588999999998765443333344567999999999999999999998 8888754333 334444 88999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 313 SNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 313 p~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
+.|+++++.+.|+.+-.|..--+..+=
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred ccCceeeecCchhhhhhccCcccccee
Confidence 999999999999999999988776653
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=7e-23 Score=164.40 Aligned_cols=209 Identities=12% Similarity=0.203 Sum_probs=165.9
Q ss_pred CCcccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcc----------e--EEEcccCCceeEEEEEEeC-C
Q 017642 76 PAESTSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREI----------F--RRDFERGGGIGVVEMLFRC-N 140 (368)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~-~ 140 (368)
......+.|.+.|+++...+ .|+++++|+ |+.|.|||+++.... + .+.-+..|...+..+.|-| +
T Consensus 34 ~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 34 NDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred CCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 34456678999999999987 589999999 888999999764311 0 1111245677777777765 3
Q ss_pred eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeC---ccEEE---eCCcEEEEEcCCCeEEEEEeccC
Q 017642 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---RIIVV---LEQKIFVYNFADLKLLHQIETIA 214 (368)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~---~d~~i~vwd~~~~~~~~~~~~~~ 214 (368)
.-.+.+++-| .++++||.++-+....|+.++.|+.-+++|- ..+++ .|-.|++-|+.+|...+++.+|.
T Consensus 114 tGmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 114 TGMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred Cceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 3345566666 9999999999999999999999999999983 33444 47799999999999999999999
Q ss_pred CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc--eee--------------eeeccCcceEEEEECCCCCEEEEEeC
Q 017642 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTK--------------FIMAHDSRIACFALTQDGQLLATSST 278 (368)
Q Consensus 215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~--------------~~~~~~~~i~~v~~sp~g~~l~s~~~ 278 (368)
+.|.++.|+|..++ +.++|+.||.|++|+.... +.. .-.+|.+.+..++|..+|.++++++.
T Consensus 189 ~~vlaV~Wsp~~e~--vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEW--VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred CceEEEEeccCcee--EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 99999999999885 3445999999999987541 221 22357788999999999999999999
Q ss_pred CCcEEEEEECCCCc
Q 017642 279 KGTLVRIFNTLDGT 292 (368)
Q Consensus 279 dg~~i~iwd~~~~~ 292 (368)
|.. +++|+..+|+
T Consensus 267 d~r-~r~wn~~~G~ 279 (397)
T KOG4283|consen 267 DDR-IRVWNMESGR 279 (397)
T ss_pred ccc-eEEeecccCc
Confidence 999 9999998764
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=169.97 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=198.3
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
.+..+|.-.|+.+.|+++...+++++ |..|+||......... ... .|...|..+..++.+.++++++.| +.
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--~~~-~h~~~V~~ls~h~tgeYllsAs~d-----~~ 326 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--SSR-PHEEPVTGLSLHPTGEYLLSASND-----GT 326 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--ccc-cccccceeeeeccCCcEEEEecCC-----ce
Confidence 56678999999999999999999999 8889999986655432 232 788889999999999999999998 99
Q ss_pred EEEEeCCCCcEEEEEecC---CceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 158 VMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 158 i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
..+.|++++..+....+. -.+++.+|+|||.++. .|+.|++||+.++..+..|.+|.++|..++|+.+|-+ +
T Consensus 327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~--L 404 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW--L 404 (506)
T ss_pred EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceE--E
Confidence 999999999988887754 3589999999999998 6999999999999999999999999999999998854 4
Q ss_pred EeecCCCCeEEEEecCc-ceeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECC--CCceeEeeEeccCcccEE
Q 017642 232 VCPGLQKGQVRVEHYAS-KRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEVRRGADRAEIY 307 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~-~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~--~~~~~~~~~~~~~~~~v~ 307 (368)
++ +.+|+.|++|+.+. +..+++.. ...++.++.|.+.|++|+.++.|=. |++++-. +..++..+.. |.+..+
T Consensus 405 at-~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~-Vy~~~k~~k~W~~~~~~~~--~sg~st 480 (506)
T KOG0289|consen 405 AT-AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ-VYICKKKTKSWTEIKELAD--HSGLST 480 (506)
T ss_pred EE-EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE-EEEEecccccceeeehhhh--cccccc
Confidence 43 55899999988765 44444432 2337999999999999999988755 5555522 4566666665 777899
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 308 SLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 308 ~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
++.|..+.+++++++.|..++++.+
T Consensus 481 ~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 481 GVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeecccceEEeeccchhheEEeec
Confidence 9999999999999999999998865
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=9.6e-23 Score=180.67 Aligned_cols=235 Identities=16% Similarity=0.239 Sum_probs=194.5
Q ss_pred cCCCCCEEE-EEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 82 SSPPPTLLH-ISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 82 ~~h~~~v~~-~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
..|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........ ..+. +|...|.+++...+.. +++++.| .++
T Consensus 54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~iSgSWD-----~Ta 124 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-LISGSWD-----STA 124 (745)
T ss_pred ccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-eEecccc-----cce
Confidence 356666666 77764 444566777 888999998776665 4565 8999999999877777 8899998 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
++|-. +++...+. |...|++++.-|++.++. .|.+|++|. .++++++|.+|.+-|+.+++-+++. ++. +
T Consensus 125 kvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~--flS--c 196 (745)
T KOG0301|consen 125 KVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH--FLS--C 196 (745)
T ss_pred EEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC--eEe--e
Confidence 99974 45555677 999999999999997777 799999998 4889999999999999999998875 343 5
Q ss_pred CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (368)
Q Consensus 236 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 315 (368)
+.||.|++|+.++..+..+.+|...|+++....++..++++++|++ ++||+.. ++.+.+.. ....|+++.+-++|
T Consensus 197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNG 271 (745)
T ss_pred cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCC
Confidence 6899999999999999999999999999998888889999999999 9999865 77777774 23489999999988
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCC
Q 017642 316 QWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 316 ~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
.. ++|+.||.||||.....+...
T Consensus 272 DI-vvg~SDG~VrVfT~~k~R~As 294 (745)
T KOG0301|consen 272 DI-VVGGSDGRVRVFTVDKDRKAS 294 (745)
T ss_pred CE-EEeccCceEEEEEecccccCC
Confidence 75 567789999999988655443
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.9e-22 Score=182.06 Aligned_cols=244 Identities=15% Similarity=0.172 Sum_probs=196.9
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
..-.|...-+.|+|.++|++|++++ |+.|++|+........ ..+. .+...+.+++...+ .+++++.+ ++|
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~-~~g~~v~~ia~~s~--~f~~~s~~-----~tv 78 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETID-ISGELVSSIACYSN--HFLTGSEQ-----NTV 78 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhh-ccCceeEEEeeccc--ceEEeecc-----ceE
Confidence 3457999999999999999998888 8889999976553221 2221 25566666666555 55666666 999
Q ss_pred EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
.+|.+..++.-..+. ..-++++++++.+|.+++ .|-.|++.++.+......+.+|..+|.++.|+|.++. ||+
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f--LAv- 155 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF--LAV- 155 (933)
T ss_pred EEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE--EEE-
Confidence 999999887665555 778899999999999998 5779999999999889999999999999999999985 443
Q ss_pred cCCCCeEEEEecCcceeee-eec-------c-CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642 235 GLQKGQVRVEHYASKRTKF-IMA-------H-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (368)
Q Consensus 235 g~~dg~i~i~~~~~~~~~~-~~~-------~-~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (368)
.+-||.|++|+...+.+.. +.+ - ...+..++|+|+|..|+....|+. |++|+...++....++...+...
T Consensus 156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccc
Confidence 3469999999987644332 211 1 345678999999888888888999 99999999999999987766667
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
+..++|+|+|+|||+++.||.|.|||+++-.
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 9999999999999999999999999999733
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.2e-23 Score=186.46 Aligned_cols=204 Identities=13% Similarity=0.188 Sum_probs=170.7
Q ss_pred cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC----------------------------------------
Q 017642 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ---------------------------------------- 165 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~---------------------------------------- 165 (368)
..|...|+++.|+++|.++|+++.| +.|+||.+..
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 3788999999999999999999999 9999997654
Q ss_pred --------------------CcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEE
Q 017642 166 --------------------SRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAV 222 (368)
Q Consensus 166 --------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 222 (368)
.++++.+. |.+.|.++.|+.++.+|. .|.+|+||++...+|+..|. |.+-|+|++|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 01223334 788999999999998887 79999999999999999995 8999999999
Q ss_pred ecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (368)
Q Consensus 223 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~ 302 (368)
+|-.+..++ +|+-||.++||......+.....-..-|++++|.|||++.+.|+.+|. +++|++...+....+....+
T Consensus 418 nPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 418 NPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred cccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeec
Confidence 998887444 599999999999999888887776788999999999999999999999 99999988776655543211
Q ss_pred ------cccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCC
Q 017642 303 ------RAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 303 ------~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
...|+.+.|.|... .|++.+.|..|||||.++.+..
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 22799999997443 4667788999999999665443
No 102
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=175.93 Aligned_cols=205 Identities=18% Similarity=0.307 Sum_probs=158.4
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
..+..+|..+|..+.||||.++|++++ +..+.+||+.++... ..+.+++...+.+++|.|++..+++|+.| +
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r 334 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----R 334 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCC-----C
Confidence 345678999999999999999998888 888999999988776 34544567888999999999999999998 8
Q ss_pred cEEEEeCCCC----------------------cEEE--------------------EEecCCceeEEEEeeCccEEE---
Q 017642 157 KVMIWDDHQS----------------------RCIG--------------------ELSFRSEVRSVKLRRDRIIVV--- 191 (368)
Q Consensus 157 ~i~vwd~~~~----------------------~~~~--------------------~~~~~~~v~~~~~~~~~~~l~--- 191 (368)
.+..||+... +.+. .+....+|+++.++.|++++.
T Consensus 335 ~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 335 TIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred cEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence 8888876532 1111 011345788888888888877
Q ss_pred eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCC
Q 017642 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDG 270 (368)
Q Consensus 192 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g 270 (368)
.+..|++||++..+.++.+.+|...-..+.-+..|..--++.+|++|+.|+||... ++.+..+.+|...|+||+|+|..
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 58889999998888888887776654444333333221233469999999998765 57788899999999999999966
Q ss_pred C-EEEEEeCCCcEEEEEECCC
Q 017642 271 Q-LLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 271 ~-~l~s~~~dg~~i~iwd~~~ 290 (368)
. ++|++++||+ ||||-...
T Consensus 495 p~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCe-EEEecCCc
Confidence 5 8999999999 99997653
No 103
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=5e-22 Score=177.67 Aligned_cols=241 Identities=15% Similarity=0.264 Sum_probs=200.5
Q ss_pred CCCEEEEEEcCCCC---EEEEEeCCeEEEEEecCCCcc-------eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642 85 PPTLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (368)
Q Consensus 85 ~~~v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 154 (368)
...|-++.|-|.+. .|+.-.++.+..|.++..... ....+ .+|+..|..++++.+..++++++.
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~Sga~----- 393 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLASGAG----- 393 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeeecCC-----
Confidence 34788888877654 445545888999988762211 11233 389999999999999999999887
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
+.|++|+..+.++++++... .+.+..|-|.+++++ ..|.+.+||+.+...+.+++.|.+.++.++.+||+..++
T Consensus 394 -~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v- 470 (888)
T KOG0306|consen 394 -ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV- 470 (888)
T ss_pred -CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE-
Confidence 79999999999999999855 788999999888887 589999999999999999999999999999999999854
Q ss_pred EeecCCCCeEEEEecCcc------eeeeee-------ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642 232 VCPGLQKGQVRVEHYASK------RTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~~------~~~~~~-------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (368)
+|+.|.+|++|+.... ..+.+. .-...|.|+.+||||++||.+=-|.+ |+||-+.+.+....+.
T Consensus 471 --T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT-VkVyflDtlKFflsLY 547 (888)
T KOG0306|consen 471 --TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT-VKVYFLDTLKFFLSLY 547 (888)
T ss_pred --EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe-EEEEEecceeeeeeec
Confidence 3678999999986531 111111 23457999999999999999999999 9999999999988998
Q ss_pred eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 299 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
+ |.-+|.+|..|||++.+++||.|.+|+||-++-|.-.+
T Consensus 548 G--HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 548 G--HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred c--cccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence 8 88999999999999999999999999999998886654
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-21 Score=156.40 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=187.7
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
+...+.-.|..++|......++.++ |..||..++.+.+.+ +-|. +|...|..+..+|....+++++.| +
T Consensus 51 ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl--RYF~-GH~~~V~sL~~sP~~d~FlS~S~D-----~ 122 (311)
T KOG1446|consen 51 TINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL--RYFP-GHKKRVNSLSVSPKDDTFLSSSLD-----K 122 (311)
T ss_pred EeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE--EEcC-CCCceEEEEEecCCCCeEEecccC-----C
Confidence 3344556788889976655555444 777999999876655 7786 999999999999999999999998 9
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e-CCcEEEEEcCCC--eEEEEEe---ccCCCeeEEEEecCCCe
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADL--KLLHQIE---TIANPKGLCAVSQGVGS 228 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~ 228 (368)
+|++||++..++...+...+ -..++|.|+|.+++ . .+.|++||++.. .+..++. ........+.|++||+.
T Consensus 123 tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 123 TVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred eEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence 99999999888877766332 33578999999998 2 338999999864 3334443 23556788999999998
Q ss_pred EEEEeecCCCCeEEE-EecCcceeeeeeccCcce---EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc
Q 017642 229 LVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRI---ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i---~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~ 304 (368)
++|.+ ..+.+++ +..++.....+..+...- -...|.||++++++|+.||+ |.+|++++++.+..+.+. +.+
T Consensus 202 iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~-i~vw~~~tg~~v~~~~~~-~~~ 276 (311)
T KOG1446|consen 202 ILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT-IHVWNLETGKKVAVLRGP-NGG 276 (311)
T ss_pred EEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc-EEEEEcCCCcEeeEecCC-CCC
Confidence 66644 5677777 888888777777665432 56789999999999999999 999999999999999875 578
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
++.++.|+|.-.+++++ +..+-+|=....+
T Consensus 277 ~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 277 PVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred CccccccCCceeeeeec--CceEEEEeccccc
Confidence 99999999977666665 5678888665433
No 105
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.7e-22 Score=160.06 Aligned_cols=245 Identities=17% Similarity=0.250 Sum_probs=177.1
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE--EEcccCCceeEEEEEEe--CCeEEEEecCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFR--CNILALVGGGPDPQY 153 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~ 153 (368)
.+.+.|.+-|+++.|.+-|+.+|+|+ |..++|||.+....... ...+ .|...+..+.|. .=|.++++++.|
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~D--- 82 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYD--- 82 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecC---
Confidence 35568999999999999999999999 88899999765555433 3333 677777777774 347889999998
Q ss_pred CCCcEEEEeCCC---------CcEEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCe------EEEEEe-
Q 017642 154 PLNKVMIWDDHQ---------SRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLK------LLHQIE- 211 (368)
Q Consensus 154 ~~~~i~vwd~~~---------~~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~------~~~~~~- 211 (368)
+++.||.-.. .....++. ....|+++.|.|. |..++ .||.++||+.-+.- +...+.
T Consensus 83 --rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 83 --RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred --CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 9999998421 12233444 7789999999995 55555 69999999875432 222222
Q ss_pred ------ccCCCeeEEEEecCCCe-EEEEeecCCC-----CeEEEEecCc-----ceeeeeeccCcceEEEEECCCC----
Q 017642 212 ------TIANPKGLCAVSQGVGS-LVLVCPGLQK-----GQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDG---- 270 (368)
Q Consensus 212 ------~~~~~v~~~~~~~~~~~-~~l~~~g~~d-----g~i~i~~~~~-----~~~~~~~~~~~~i~~v~~sp~g---- 270 (368)
.+..+..|+.|++..-. .++|. |+.+ +.+.||.... ..+..+.+|..+|+.|+|.|+-
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 23445667778754321 24444 5443 3677754433 3345677899999999999953
Q ss_pred CEEEEEeCCCcEEEEEECCCC--------------------ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642 271 QLLATSSTKGTLVRIFNTLDG--------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 271 ~~l~s~~~dg~~i~iwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iw 330 (368)
.+||+++.|| |+||.+... +.+..+.. |.+.|+.+.|+-.|..|++.++||.||+|
T Consensus 240 ~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 240 HLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred eeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 4899999999 899998631 22333444 88999999999999999999999999999
Q ss_pred EccC
Q 017642 331 NLKV 334 (368)
Q Consensus 331 d~~~ 334 (368)
...-
T Consensus 316 kany 319 (361)
T KOG2445|consen 316 KANY 319 (361)
T ss_pred hhhh
Confidence 7653
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.7e-22 Score=169.98 Aligned_cols=236 Identities=19% Similarity=0.270 Sum_probs=187.9
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v 160 (368)
..|...|.+++.++||+|||+|+ |..|.||+.++.+.. +.+. +|...|.+++|.....-+.+++.| +.|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv--~~~~-ghr~~V~~L~fr~gt~~lys~s~D-----rsvkv 270 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV--KVFK-GHRGAVSSLAFRKGTSELYSASAD-----RSVKV 270 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh--hccc-ccccceeeeeeecCccceeeeecC-----CceEE
Confidence 38999999999999999999999 888999999987776 4465 899999999998877777777777 99999
Q ss_pred EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
|+++....+.++- |.+.|.++....-++.+. .|.++++|++... ....+.++.+.+.|++|-.+.. ++ +|+
T Consensus 271 w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H---fv-sGS 345 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH---FV-SGS 345 (479)
T ss_pred EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc---ee-ecc
Confidence 9999888777766 999999999888777776 6999999999443 3345667888899999987765 34 499
Q ss_pred CCCeEEEEecCcc-eeeeee-cc-----------CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----ceeEeeEe
Q 017642 237 QKGQVRVEHYASK-RTKFIM-AH-----------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRR 299 (368)
Q Consensus 237 ~dg~i~i~~~~~~-~~~~~~-~~-----------~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~ 299 (368)
.+|.|.+|....+ ++.+.. +| ...|++++..|...++++|+.+|. |++|-+..+ +++..+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls- 423 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS- 423 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc-
Confidence 9999999886653 332221 12 237999999999999999999999 999999877 3444554
Q ss_pred ccCcccEEEEEEecCCCEEEEE-eCCCeEEEEEccC
Q 017642 300 GADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKV 334 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~ 334 (368)
-.+.|++|+|+++|+.+++| +....+--|-...
T Consensus 424 --~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 424 --LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred --cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence 36789999999999966655 4555555555443
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=163.54 Aligned_cols=242 Identities=15% Similarity=0.232 Sum_probs=201.2
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
....+|.+.|+.++.......+.+++ |.+.+||.++.+.+... +. +|...+.++.|++.+.++++++.| ++
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~--Y~-GH~GSVNsikfh~s~~L~lTaSGD-----~t 213 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT--YT-GHTGSVNSIKFHNSGLLLLTASGD-----ET 213 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee--ec-ccccceeeEEeccccceEEEccCC-----cc
Confidence 44678999999999887777888888 99999999999888744 44 899999999999999999999888 88
Q ss_pred EEEEe------CCC------------------------------C----cEEEEEe-cCCceeEEEEeeCccEEE---eC
Q 017642 158 VMIWD------DHQ------------------------------S----RCIGELS-FRSEVRSVKLRRDRIIVV---LE 193 (368)
Q Consensus 158 i~vwd------~~~------------------------------~----~~~~~~~-~~~~v~~~~~~~~~~~l~---~d 193 (368)
-.||. +.. + .++..+. |...|.+..|...|..++ .|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 88884 111 0 1334455 778888888988888777 69
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC
Q 017642 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ 271 (368)
Q Consensus 194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~ 271 (368)
.+..+||+++|+.+..+.+|....+.++-+|..+ |+.+.+.|.+.++|+... ..+..|.+|...|+++.|.-+.
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr---LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd- 369 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQR---LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD- 369 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcce---EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-
Confidence 9999999999999999999999999999888876 333478999999999875 4566789999999999998765
Q ss_pred EEEEEeCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 272 LLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
.+++|+.|.+ |+|||+++.. ++.+++. ..+++.++.+..+..++.--+++.|++||++-..
T Consensus 370 ~vVSgSDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 370 RVVSGSDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ceeecCCCce-EEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 5889999999 9999999865 5666664 5689999999888888888888999999997543
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.5e-22 Score=179.38 Aligned_cols=235 Identities=15% Similarity=0.255 Sum_probs=192.2
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEE-EEEeC-CeEEEEecCCCCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC-NILALVGGGPDPQYPLN 156 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~s~~~d~~~~~~ 156 (368)
...+|...|..+++.+.. ++++++ |+++++|+-...+......+. ++...+.. +++.+ +.-.++.++.| .
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D-----~ 81 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMD-----T 81 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeeccc-----c
Confidence 456899999998887655 566666 889999996544444333443 34443333 55543 33346677777 9
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
.|.+|...+..+...+. |...|.++....++.++. .|.++++|-. +++...+.+|...|+++..-|++. ++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~---~v- 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENT---YV- 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCc---EE-
Confidence 99999999999999998 999999999999988555 6999999985 566777899999999999888873 33
Q ss_pred ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 313 (368)
+|+.|.+|++|.- ++.++++.+|...|+.+++-+++ .+++++.||. |++|++ +|+++.++.+ |...|.++....
T Consensus 156 TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEecC
Confidence 4889999999976 78889999999999999998775 4789999999 999998 8999999998 889999999888
Q ss_pred CCCEEEEEeCCCeEEEEEcc
Q 017642 314 NAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 314 ~~~~l~s~s~dg~i~iwd~~ 333 (368)
++..++++++|++++||+..
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CCCeEEEecCCceEEEeecC
Confidence 88999999999999999987
No 109
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=5.2e-23 Score=166.26 Aligned_cols=209 Identities=14% Similarity=0.233 Sum_probs=173.6
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC------------C------cEEEEEe-cCCceeEEEEeeCc
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------------S------RCIGELS-FRSEVRSVKLRRDR 187 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~------------~------~~~~~~~-~~~~v~~~~~~~~~ 187 (368)
.|...+.+.+|++++.++++|+.| ..|+|+|++. + -.++++- |.+.|.++.|+|..
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 688889999999999999999998 9999999862 1 1345554 99999999999999
Q ss_pred cEEE---eCCcEEEEEcCCCeE---EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee----eecc
Q 017642 188 IIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----IMAH 257 (368)
Q Consensus 188 ~~l~---~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~----~~~~ 257 (368)
.+++ .|++|++||+..... .+.+. ...++.++.|+|.|+.+++ |.....+++++.+..+... -..|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllv---gTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLV---GTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEE---ecCCCceeEEeccceeEeeecCccccc
Confidence 9988 599999999965322 22332 3458999999999996443 6678899997776643222 3468
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.+.|+++.+++.|++.++++.||. |+|||--+++++.++...+....|.+..|..+|+++++.+.|..+++|.+.+++.
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999999999999 9999999999999888664556899999999999999999999999999999988
Q ss_pred CCCCCCCC
Q 017642 338 SARSEPRS 345 (368)
Q Consensus 338 ~~~~~~~~ 345 (368)
.....+.+
T Consensus 340 l~~YtGAg 347 (430)
T KOG0640|consen 340 LKEYTGAG 347 (430)
T ss_pred EEEEecCC
Confidence 87766653
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.6e-22 Score=167.00 Aligned_cols=239 Identities=19% Similarity=0.262 Sum_probs=179.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEE
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vw 161 (368)
..+.|++|.|+|...+|++++ |+.++||.++.........+. -....+.+..|.+++. .+++++.. ..++.|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysy 285 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSY 285 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccc-----eEEEEe
Confidence 356899999999999998888 999999999865544433332 3455566666766666 55555554 566777
Q ss_pred eCCCC---------------------------------------------cEEEEEecCCceeEEEEeeCccEEE---eC
Q 017642 162 DDHQS---------------------------------------------RCIGELSFRSEVRSVKLRRDRIIVV---LE 193 (368)
Q Consensus 162 d~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~---~d 193 (368)
|+.+. +.+..++-.+.|..++|+.|++.++ .+
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC
Confidence 76653 2333334456788999999998777 58
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCe--eEEEEecCCCeEEEEeecCCCCeEEEEecCc-------ceeeeeeccCcceEEE
Q 017642 194 QKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRTKFIMAHDSRIACF 264 (368)
Q Consensus 194 ~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~v 264 (368)
|.|++||++...+++.+.. .+.+ +.++.+.++. ++|+ |+..|.|.|++.+. +++..+..-...|++|
T Consensus 366 GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~--ylA~-GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS--YLAT-GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred ceEEEEecCCcceEEEEee-cCccceeeeeecCCCc--eEEe-ccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 9999999999999988854 3333 4567778887 5675 99999999987543 5566666677789999
Q ss_pred EECCCCCEEEEEeC--CCcEEEEEECCCCceeEeeEecc-CcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 265 ALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 265 ~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+|++|+++||.++. +.. +|+--+.+......+.... .-+.|+||+|||.|.+||.|.++|.+.+|.+.
T Consensus 442 ~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999988875 456 8888888777666655421 22479999999999999999999999999874
No 111
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.9e-22 Score=174.13 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=197.2
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642 89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (368)
Q Consensus 89 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~ 168 (368)
+-+.|+ ....||+|....|.+|+...+.......+ +...+.++.|++++..|+.|..+ |.|.|||..+.+.
T Consensus 181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKK 251 (484)
T ss_pred hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhccc
Confidence 346777 56688999888999999877665444343 37889999999999999999887 9999999999888
Q ss_pred EEEEe--cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642 169 IGELS--FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (368)
Q Consensus 169 ~~~~~--~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~ 244 (368)
+..+. |...|-+++|+....... .|+.|..+|++..+.... +.+|...|..+.|++|+.. +|. |+.|+.+.||
T Consensus 252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lAS-GgnDN~~~Iw 328 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LAS-GGNDNVVFIW 328 (484)
T ss_pred cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--ecc-CCCccceEec
Confidence 88876 789999999993332222 699999999988765544 7889999999999999985 554 8899999998
Q ss_pred ec-CcceeeeeeccCcceEEEEECCCC-CEEEEEe--CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEE
Q 017642 245 HY-ASKRTKFIMAHDSRIACFALTQDG-QLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (368)
Q Consensus 245 ~~-~~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 320 (368)
+. .......+..|.+.|.+++|+|.. .+||+|+ .|+. |++||..+++.+..+.. ...|.+|.|++..+-|++
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLS 404 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEE
Confidence 87 446777889999999999999954 4888875 4888 99999999999988874 568999999999876665
Q ss_pred E--eCCCeEEEEEccCCCCCCCCCCCC
Q 017642 321 S--SDKGTVHVFNLKVNSGSARSEPRS 345 (368)
Q Consensus 321 ~--s~dg~i~iwd~~~~~~~~~~~~~~ 345 (368)
+ ..++.|.||++.+.+......++.
T Consensus 405 thG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred ecCCCCCcEEEEeccccceeeeecCCc
Confidence 4 357789999999988777766653
No 112
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.7e-24 Score=189.16 Aligned_cols=218 Identities=18% Similarity=0.289 Sum_probs=185.9
Q ss_pred EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCC
Q 017642 99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS 176 (368)
Q Consensus 99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~ 176 (368)
+++... +..+++|+.... . .|...+-++..-.....++.|+.| ..+-+|.+..-..+..+. |..
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~--~-------~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hes 71 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF--V-------AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHES 71 (825)
T ss_pred ccceeeeeeccccccchhh--h-------hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCC
Confidence 344443 455778885421 1 344455555555567778888887 888899988877777777 999
Q ss_pred ceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceee
Q 017642 177 EVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTK 252 (368)
Q Consensus 177 ~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~ 252 (368)
+|.++.|+.+..+++ .+|+|++||++.++.++++.+|...+..+.|+|-+.+ .+ +|+.|+.+++|+.. ..+..
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~--~a-~gStdtd~~iwD~Rk~Gc~~ 148 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF--FA-SGSTDTDLKIWDIRKKGCSH 148 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE--ec-cccccccceehhhhccCcee
Confidence 999999999998888 6899999999999999999999999999999999975 34 59999999998877 68888
Q ss_pred eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 253 ~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
.+.+|...+..+.|+|+|++++.+++|.. ++|||+..|+.+.+|.. |.+.+..+.|+|..-++++|+.|++|++||+
T Consensus 149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 149 TYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeecc
Confidence 89999999999999999999999999999 99999999999999998 8899999999999999999999999999999
Q ss_pred cCCC
Q 017642 333 KVNS 336 (368)
Q Consensus 333 ~~~~ 336 (368)
++-+
T Consensus 226 etfe 229 (825)
T KOG0267|consen 226 ETFE 229 (825)
T ss_pred ceeE
Confidence 9543
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=179.07 Aligned_cols=244 Identities=11% Similarity=0.173 Sum_probs=203.2
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeEEEEecCCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~~ 156 (368)
..-..|.+.|+.+....+|+.|++++ |.+|++|+......-+...+. .|...|.++++ ..+...+++|+-| +
T Consensus 67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD-----~ 140 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLD-----R 140 (735)
T ss_pred hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCC-----c
Confidence 34467999999999999998888888 888999998876544445665 89999999999 8889999999998 9
Q ss_pred cEEEEeCCCCc--EEEEE----------ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEE
Q 017642 157 KVMIWDDHQSR--CIGEL----------SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA 221 (368)
Q Consensus 157 ~i~vwd~~~~~--~~~~~----------~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 221 (368)
.|.+||++++. .+..+ .+...|++++-++.|..++ ..+.|++||.++++.+..+.+|...|.++.
T Consensus 141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE
Confidence 99999999872 33222 2567899999999998888 477899999999999999999999999999
Q ss_pred EecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEe
Q 017642 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRR 299 (368)
Q Consensus 222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~ 299 (368)
++.||..++ +++.||+|++|+... +++.++..|...|.++..+|+-.++++|+.||. |..=|+++. +....++
T Consensus 221 ~~dDGt~~l---s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~-i~~Tdl~n~~~~tlick- 295 (735)
T KOG0308|consen 221 VNDDGTRLL---SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN-IYRTDLRNPAKSTLICK- 295 (735)
T ss_pred EcCCCCeEe---ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc-EEecccCCchhheEeec-
Confidence 999998743 477899999998876 677889999999999999999999999999999 999999984 3443344
Q ss_pred ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
...+|..+..+.+.+-+-+++.|+.|+-|..+-.
T Consensus 296 --~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 296 --EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred --CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 3557888888865555577788999999987643
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-21 Score=154.33 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=173.6
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA 202 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~ 202 (368)
+|...+..+.|+.++-++.+++.| ....+|-..+|+.+.++. |.+.|+++..+-+.+.++ .|.++++||++
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 788899999999999999999998 999999988999999999 999999999999988888 69999999999
Q ss_pred CCeEEEEEeccCCCeeEEEEecCCCeEEEEeec---CCCCeEEEEecC--------cceeeeeeccCcceEEEEECCCCC
Q 017642 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG---LQKGQVRVEHYA--------SKRTKFIMAHDSRIACFALTQDGQ 271 (368)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g---~~dg~i~i~~~~--------~~~~~~~~~~~~~i~~v~~sp~g~ 271 (368)
+|+++..++ ...+|..+.|+.+|+..+ +++- +..+.|.+++.. ..+...+..+...++.+-|.|-++
T Consensus 83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l-~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQLATWK-TNSPVKRVDFSFGGNLIL-ASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcEEEEee-cCCeeEEEeeccCCcEEE-EEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999886 456889999999998644 3321 123456664433 234667778889999999999999
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
+|++|.+||. |.+||+++|+.+.. ... |...|++|++++|..++++++.|.+-++||+.+-+-.+.
T Consensus 161 ~ii~Ghe~G~-is~~da~~g~~~v~s~~~--h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 161 TIIAGHEDGS-ISIYDARTGKELVDSDEE--HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEEEecCCCc-EEEEEcccCceeeechhh--hccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 9999999999 99999999865543 344 777999999999999999999999999999988765443
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.4e-22 Score=168.45 Aligned_cols=221 Identities=13% Similarity=0.228 Sum_probs=181.8
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
...-++.|.|++-+|+|.+|+.|+ .+.+++|.+.++.... .+. .|-..+.++.|+.++..+++++.| |.|.
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--v~~-aHYQ~ITcL~fs~dgs~iiTgskD-----g~V~ 148 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--VLS-AHYQSITCLKFSDDGSHIITGSKD-----GAVL 148 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--HHH-hhccceeEEEEeCCCcEEEecCCC-----ccEE
Confidence 344567899999999999999997 7779999999888763 343 899999999999999999999999 9999
Q ss_pred EEeCC---------CCcEEEEEe-cCCceeEEEEeeCc---cEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec
Q 017642 160 IWDDH---------QSRCIGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (368)
Q Consensus 160 vwd~~---------~~~~~~~~~-~~~~v~~~~~~~~~---~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 224 (368)
+|++. +-++++.+. |.-.|+++...+.| +++. .|.++++||+..|..+.++. ....+.++++.|
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDp 227 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDP 227 (476)
T ss_pred EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcc
Confidence 99753 235677777 89999999988753 3332 69999999999999888875 566889999999
Q ss_pred CCCeEEEEeecCCCCeEEEEecC-----------------cceeeeeeccCc--ceEEEEECCCCCEEEEEeCCCcEEEE
Q 017642 225 GVGSLVLVCPGLQKGQVRVEHYA-----------------SKRTKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRI 285 (368)
Q Consensus 225 ~~~~~~l~~~g~~dg~i~i~~~~-----------------~~~~~~~~~~~~--~i~~v~~sp~g~~l~s~~~dg~~i~i 285 (368)
.+..+++ |..+|.|.+.+.. +..+..+.+|.+ .|+|++++-||.+|++|+.||. |+|
T Consensus 228 ae~~~yi---Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-Vcv 303 (476)
T KOG0646|consen 228 AERVVYI---GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCV 303 (476)
T ss_pred cccEEEe---cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEE
Confidence 9986443 7889999883321 123455678888 9999999999999999999999 999
Q ss_pred EECCCCceeEeeEeccCcccEEEEEEecCCC
Q 017642 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (368)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 316 (368)
||+.+.++++++.. ..++|+.+.+.|-.+
T Consensus 304 Wdi~S~Q~iRtl~~--~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 304 WDIYSKQCIRTLQT--SKGPVTNLQINPLER 332 (476)
T ss_pred EecchHHHHHHHhh--hccccceeEeecccc
Confidence 99999999988874 467899999866433
No 116
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=158.65 Aligned_cols=242 Identities=14% Similarity=0.158 Sum_probs=177.9
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC------------cceEEEcccCCceeEEEEEEe-------CCeEEE
Q 017642 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR------------EIFRRDFERGGGIGVVEMLFR-------CNILAL 144 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 144 (368)
.+-...+.|+|||..|++-+ |+.+++|++.... ......+ .....+...+|- |+..++
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCcccee
Confidence 34556789999999998888 9999999984211 1111112 234445555553 566777
Q ss_pred EecCCCCCCCCCcEEEEeCCCCcEEEEEe---cCC---ceeEEEEeeCccEEE--eCCcEEEEEc-CCCeEEEE---E--
Q 017642 145 VGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRS---EVRSVKLRRDRIIVV--LEQKIFVYNF-ADLKLLHQ---I-- 210 (368)
Q Consensus 145 ~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~--~d~~i~vwd~-~~~~~~~~---~-- 210 (368)
++.+++ .-|++||.-+|+....+. |.. ...+++|+|||..++ ....|++||+ +.|+.... +
T Consensus 127 a~ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 127 AVSSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eecccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence 777777 899999999999888775 433 456899999999888 6789999999 66643221 1
Q ss_pred --eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe-cCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642 211 --ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (368)
Q Consensus 211 --~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd 287 (368)
.+..+-+.+++|+|.... .+++ |+....+-|+. ...+++..+.+|.+.|+.+.|+++|+.|++|+.....|..||
T Consensus 202 ~k~gq~giisc~a~sP~~~~-~~a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSK-TLAV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred ccccccceeeeeeccCCCCc-ceee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 123456788999998765 3455 77788888843 445677788899999999999999999999987443399999
Q ss_pred CCC-CceeEeeEeccCcc-cEEEEEE--ecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 288 TLD-GTLLQEVRRGADRA-EIYSLAF--SSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 288 ~~~-~~~~~~~~~~~~~~-~v~~l~~--sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
++. ..++..+.+ |.+ .-..|-| .|++++|++|+.||.|++||+++...
T Consensus 280 iR~~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 280 IRYSRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred ehhccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 985 566777776 333 3344544 58999999999999999999998544
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.8e-20 Score=162.33 Aligned_cols=237 Identities=15% Similarity=0.169 Sum_probs=170.5
Q ss_pred CEEEEEEcCCCCEE-EEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeC
Q 017642 87 TLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 87 ~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~ 163 (368)
.+.+++|+|+|+.+ +++. ++.|++||..+++.. ..+. .+ .....+.+++++..+ +++..+ +.|++||+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP-SG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc-CC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 46789999999976 4555 677999998876543 3332 22 223456777776544 455555 89999999
Q ss_pred CCCcEEEEEecCCceeEEEEeeCccEEE---eC-CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC
Q 017642 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (368)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg 239 (368)
.+++.+..+.+...+.+++|+|++.+++ .+ ..+++||.++++....+.. ......++|+++++.+++ ++..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~--~~~~~~ 179 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV--SSEIGG 179 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE--EcCCCC
Confidence 9988888887666688999999999887 23 3578889988877665533 234567899999986443 355689
Q ss_pred eEEEEecCcce-eeeeeccC-------cceEEEEECCCCCEEEEE-eCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 240 QVRVEHYASKR-TKFIMAHD-------SRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 240 ~i~i~~~~~~~-~~~~~~~~-------~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
.|++|+..... +..+..+. .....++|+|++++++++ +.++. |.+||+.+++.+..+.. ...+.+++
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~---~~~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLV---GQRVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEe---CCCcceEE
Confidence 99998876543 33333211 123568899999975543 45667 99999999888766542 34789999
Q ss_pred EecCCCEEEEE-eCCCeEEEEEccCCCCCC
Q 017642 311 FSSNAQWLAVS-SDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 311 ~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~ 339 (368)
|+|+|++|+++ +.+|.|++||+++++...
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99999999876 468999999999877643
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=166.77 Aligned_cols=235 Identities=12% Similarity=0.120 Sum_probs=190.1
Q ss_pred CEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-c
Q 017642 98 GCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F 174 (368)
Q Consensus 98 ~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~ 174 (368)
.+++++. ...+.+|.+........+. --+..+.++.-++.+.+++.+.-. +.|++|.+.+|..+..+. |
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aH 122 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYI---VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAH 122 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhc---ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhh
Confidence 5777777 3349999987654443111 345668889999999999988655 999999999999998888 9
Q ss_pred CCceeEEEEeeCccEEE---eCCcEEEEEcC---------CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642 175 RSEVRSVKLRRDRIIVV---LEQKIFVYNFA---------DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l~---~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~ 242 (368)
-..|+++.|+.|+.+++ .||.|.+|++. +-+.++.+..|.-+|+.+...+.|..-.+.+ .+.|.+++
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k 201 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIK 201 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEE
Confidence 99999999999999999 59999999873 2356788888999999998888765544554 77999999
Q ss_pred EEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----------------ceeEeeEeccCcccE
Q 017642 243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------------TLLQEVRRGADRAEI 306 (368)
Q Consensus 243 i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----------------~~~~~~~~~~~~~~v 306 (368)
+|+.....+..-......+.+++.+|-++.++.|+.+|. |.+.++... ..+..+.++.....|
T Consensus 202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 999988776655566778999999999999999999999 888877432 344556663333499
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
+|++++-||.+|++|+.||.++|||+...+-+....
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 999999999999999999999999999887766555
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.1e-22 Score=179.50 Aligned_cols=240 Identities=13% Similarity=0.215 Sum_probs=182.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceE--EEcc--cCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEE
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFE--RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~ 159 (368)
.....+|..+++-..++.++...++||.++....... ..+. ..-...+.++.|.. ...++++++.. |.|.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i~ 113 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVIS 113 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcEE
Confidence 4467778888998889888888899998875443222 1111 01122333445542 23445666655 9999
Q ss_pred EEeCCC---CcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 160 IWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 160 vwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
+||+.. .+.+..|. |...+.++.|++-.-.++ .||.|++||++..+-..++.+....|..+.|+|.....+
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F- 192 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF- 192 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE-
Confidence 999987 45556676 999999999999765544 599999999999888888888888999999999876543
Q ss_pred EeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce--eEeeEeccCcccEE
Q 017642 232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIY 307 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~ 307 (368)
+ ++...|.+++|+... +....+.+|.++|.|+.|+|++.+||+|+.|+. |+|||+.+.+. +.++. ...+|.
T Consensus 193 ~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~ 267 (839)
T KOG0269|consen 193 A-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVG 267 (839)
T ss_pred E-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceee
Confidence 3 367899999999876 556678899999999999999999999999999 99999986543 33444 356899
Q ss_pred EEEEecCCCE-EEEEe--CCCeEEEEEccCC
Q 017642 308 SLAFSSNAQW-LAVSS--DKGTVHVFNLKVN 335 (368)
Q Consensus 308 ~l~~sp~~~~-l~s~s--~dg~i~iwd~~~~ 335 (368)
+|.|-|+..+ |++++ .|-.|+|||++.+
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999998764 56654 5778999999764
No 120
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=7e-22 Score=169.74 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=157.5
Q ss_pred EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe--cCCceeEEEEeeCccEEE---e
Q 017642 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS--FRSEVRSVKLRRDRIIVV---L 192 (368)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~---~ 192 (368)
..+. +|...|.++.+++.+..+++|+.| ..|++||+... +..+.+. ....|.++.|++.|..++ .
T Consensus 161 i~l~-hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 161 IQLK-HGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred Eecc-CCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 4454 677788999999999999999998 99999998643 2233343 567899999999876655 4
Q ss_pred CCcEEEEEcCCCeEEEEE------------eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce--eeeee---
Q 017642 193 EQKIFVYNFADLKLLHQI------------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIM--- 255 (368)
Q Consensus 193 d~~i~vwd~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~--~~~~~--- 255 (368)
...++|+|-...+..... ++|...+++.+|+|+.+..+|.| +.||+++||+..... ...++
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeecc
Confidence 668999995433322222 35777889999999999877754 689999999877622 22222
Q ss_pred --ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc--eeEeeEeccCcc--cEEEEEEecCCCEEEEEeCCCeEEE
Q 017642 256 --AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHV 329 (368)
Q Consensus 256 --~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~dg~i~i 329 (368)
+..-+++.++|++||++||+|+.||. |.+|+..+.. ....++. .|.. .|++|.||+||++|++-+.|+++++
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccCCCceee
Confidence 33457899999999999999999999 9999975432 2222332 2554 8999999999999999999999999
Q ss_pred EEccCCCC
Q 017642 330 FNLKVNSG 337 (368)
Q Consensus 330 wd~~~~~~ 337 (368)
||++..++
T Consensus 391 WDLrq~kk 398 (641)
T KOG0772|consen 391 WDLRQFKK 398 (641)
T ss_pred eecccccc
Confidence 99987654
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.4e-23 Score=183.58 Aligned_cols=231 Identities=13% Similarity=0.216 Sum_probs=201.1
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
...|...|.|+..-..++.+++|+ |..+-+|.+....... .+. +|...|-++.|+.....++.+..+ |+|+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--S~~-~hespIeSl~f~~~E~Llaagsas-----gtiK 95 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--SLT-GHESPIESLTFDTSERLLAAGSAS-----GTIK 95 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--eee-ccCCcceeeecCcchhhhcccccC-----Ccee
Confidence 346788888988877888999998 6668899987655553 354 899999999999999999999888 9999
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
+||++.++.++++. |...+..+.|+|-+.+.+ .|..+++||++...|.+.+.+|...+.++.|+|+|.+ ++ .|
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~--v~-~g 172 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW--VA-SG 172 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCce--ee-cc
Confidence 99999999999988 999999999999999997 6999999999988899999999999999999999984 44 47
Q ss_pred CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
+.|..++||+... +....+..|.+.+..+.|+|..-++++|+.|++ |++||+++.+.+..... ....|.++.|+|+
T Consensus 173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPD 249 (825)
T ss_pred CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCC
Confidence 7899999988755 566678999999999999999999999999999 99999999888877665 4678999999999
Q ss_pred CCEEEEEeCCC
Q 017642 315 AQWLAVSSDKG 325 (368)
Q Consensus 315 ~~~l~s~s~dg 325 (368)
++.+++|....
T Consensus 250 ~~~~~~G~q~s 260 (825)
T KOG0267|consen 250 GKIVLSGEQIS 260 (825)
T ss_pred ceeeecCchhh
Confidence 99998886543
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=152.93 Aligned_cols=237 Identities=14% Similarity=0.214 Sum_probs=184.2
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642 88 LLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (368)
Q Consensus 88 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~ 166 (368)
..|+.|++-|.+||+|. +|.|.|||+.+.... +.+. +|-..+.+++|++++..+++++.| ..|.+||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCC
Confidence 78999999999999999 888999999987754 4565 888999999999999999999998 99999999999
Q ss_pred cEEEEEecCCceeEEEEeeC-----------------------------------------------ccEEE---eCCcE
Q 017642 167 RCIGELSFRSEVRSVKLRRD-----------------------------------------------RIIVV---LEQKI 196 (368)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~-----------------------------------------------~~~l~---~d~~i 196 (368)
.+++.+....+|+.+.|+|. |+++. ..|.+
T Consensus 98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 99888877777776666653 23333 35678
Q ss_pred EEEEcCCCeEEEEEeccC-CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------cee---eeee--ccCcceEE
Q 017642 197 FVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRT---KFIM--AHDSRIAC 263 (368)
Q Consensus 197 ~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~---~~~~--~~~~~i~~ 263 (368)
.++|.++.+++..++... ..|..+.++..|+.+++ .+.|..||.++... ..+ ..+. .....-.+
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii---NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII---NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEE---ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 888888888887776555 67788899999986544 44799999965441 011 1111 11223467
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 264 v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
++|+.+|.|++.++.....++||....|.+++.+.+. ......++.|+|-...+++. ..|.++||.......
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCC-chhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 8999999999988866555999999999999988873 23578899999988888877 788999999866543
No 123
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.9e-21 Score=171.96 Aligned_cols=237 Identities=16% Similarity=0.232 Sum_probs=186.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC---CeEEEEecCCCCCCCCCcE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d~~~~~~~i 158 (368)
.....+.+++.+|+|++||+|+ -+.++||++...+.... ++ .|...+.++.|+. ...+++++++| .-|
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~--~e-AHesEilcLeyS~p~~~~kLLASasrd-----RlI 528 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF--ME-AHESEILCLEYSFPVLTNKLLASASRD-----RLI 528 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhh--ee-cccceeEEEeecCchhhhHhhhhccCC-----ceE
Confidence 3456899999999999999999 55699999987666533 43 8999999999875 35678999998 999
Q ss_pred EEEeCCCC-cEEEEEe-cCCceeEEEEeeCc--cEEE---eCCcEEEEEcCC----CeEEE--EEeccCCCeeEEEEecC
Q 017642 159 MIWDDHQS-RCIGELS-FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFAD----LKLLH--QIETIANPKGLCAVSQG 225 (368)
Q Consensus 159 ~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~--~~l~---~d~~i~vwd~~~----~~~~~--~~~~~~~~v~~~~~~~~ 225 (368)
.|||+... ..++++. |...|+++.|..+| ..++ .|+.|. |+... |.... +-......+..+++.|.
T Consensus 529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCC
Confidence 99998755 5667777 89999999999877 3344 455554 33322 22111 00112345677888888
Q ss_pred CCeEEEEeecCCCCeEEEEe-cCcceeeeeec---cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642 226 VGSLVLVCPGLQKGQVRVEH-YASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (368)
Q Consensus 226 ~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~---~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (368)
.+..+. ++.|..|+|++ ..++..+.+++ |++..-.+...|.|.|||+.+.|.+ +.++|..+|+++..+.+
T Consensus 608 ~k~v~t---~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G-- 681 (1080)
T KOG1408|consen 608 SKLVVT---VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG-- 681 (1080)
T ss_pred cceEEE---EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--
Confidence 875443 55899999955 45566777764 6777888999999999999999999 99999999999999998
Q ss_pred CcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchheeeeeecccchhheeecCCceEEEEECch
Confidence 888999999999999999999999999999854
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.4e-20 Score=162.56 Aligned_cols=241 Identities=13% Similarity=0.197 Sum_probs=192.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
.-+..|.+++|+.+.+.||++. ++.|.||++... -.....+..+....+-.++|.+++..+.++.. |.|..|
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~Ew 95 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITEW 95 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEEE
Confidence 4467899999999999999998 888999999763 33334443345566778888876666666554 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEE--EEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLH--QIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
|+.+++....+. ..+.|++++.+|.+..++ .||.++.++...++... .+....+.+-++.|++++.. ++ +|
T Consensus 96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~-~G 172 (691)
T KOG2048|consen 96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IA-GG 172 (691)
T ss_pred ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EE-ec
Confidence 999999999998 889999999999888777 58888888887776543 33334578889999999875 44 48
Q ss_pred CCCCeEEEEecCcceeee-----e---ec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642 236 LQKGQVRVEHYASKRTKF-----I---MA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 236 ~~dg~i~i~~~~~~~~~~-----~---~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
+.||.|++|+........ + .. ...-|.++.|-.++ .|++|...|+ |++||-..+..++.+.. |.+.|
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adV 248 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADV 248 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhcce
Confidence 999999999876533222 1 11 23357788887665 6899999999 99999999999999988 88999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.+++..+++.++++++.|+.|.-|...+.+.
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 9999999999999999999999999887765
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.6e-21 Score=160.97 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=176.9
Q ss_pred EEEEEcC-------CCCEEEEEe-CCeEEEEEecCCCcceE-EEcc-----------------cCCceeEEEEEEeCC-e
Q 017642 89 LHISFNQ-------DHGCFAAGT-DHGFRIYNCDPFREIFR-RDFE-----------------RGGGIGVVEMLFRCN-I 141 (368)
Q Consensus 89 ~~~~~s~-------~g~~l~~~~-d~~i~iw~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~-~ 141 (368)
.|++|.. .|+++|.|+ |..|.|||++-.....- ..+. .+|...+..++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5667743 367999999 88999999863322110 0010 146666777888764 4
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCCC
Q 017642 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANP 216 (368)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~~ 216 (368)
.+|++++.| .+|++||+.++++...+. |.+.|.++.|++..- +++ .|++|.+.|.+........-...+.
T Consensus 257 nVLaSgsaD-----~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~ 331 (463)
T KOG0270|consen 257 NVLASGSAD-----KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE 331 (463)
T ss_pred eeEEecCCC-----ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc
Confidence 578889988 999999999999999999 999999999999654 444 6999999999853222222224567
Q ss_pred eeEEEEecCCCeEEEEeecCCCCeEEEEe-cCc-ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCce
Q 017642 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL 293 (368)
Q Consensus 217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~-~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~ 293 (368)
|-.++|.+.....+++ +..||+++-.+ +.. +++.++++|.++|.+|+++..-. +|++++.|+. |++|++.....
T Consensus 332 VEkv~w~~~se~~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~ 408 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSP 408 (463)
T ss_pred eEEEEecCCCceeEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCC
Confidence 8889999998875554 57899999844 333 78889999999999999987654 7999999999 99999875443
Q ss_pred eEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCC
Q 017642 294 LQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 294 ~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.........-+...|+++.|+-. +|+.|+..+.++|||+.+....
T Consensus 409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 22211111123467777888765 5677788888999999887654
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.7e-20 Score=150.82 Aligned_cols=206 Identities=16% Similarity=0.248 Sum_probs=159.6
Q ss_pred CCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCc----------EEEEE------ecCCceeEEEEeeC--c
Q 017642 127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSR----------CIGEL------SFRSEVRSVKLRRD--R 187 (368)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~----------~~~~~------~~~~~v~~~~~~~~--~ 187 (368)
.|...|..+...+ .+.++++|+.| |.|.+||++... .+..+ .|+..|..+.|-|- |
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 3444555555543 56778888887 999999987532 11111 16778999999993 4
Q ss_pred cEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC-eEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEE
Q 017642 188 IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIAC 263 (368)
Q Consensus 188 ~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~ 263 (368)
.+.. .|.+++|||..+.+....|+ ..+.|..-+++|-.. +.++| .|..+-+|++ +...+.....+.+|.+.|.+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA-~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIA-AGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEE-EecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 4443 59999999999998887775 466788888988765 44555 4889999999 77778888899999999999
Q ss_pred EEECCCCC-EEEEEeCCCcEEEEEECCCC-ceeEeeE------------eccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642 264 FALTQDGQ-LLATSSTKGTLVRIFNTLDG-TLLQEVR------------RGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (368)
Q Consensus 264 v~~sp~g~-~l~s~~~dg~~i~iwd~~~~-~~~~~~~------------~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i 329 (368)
+.|+|... .|++|+.||. |++||++.. .+...+. ...|.+.|..++|+.|+.++++++.|..+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 99999877 6889999999 999999864 2333322 2236788999999999999999999999999
Q ss_pred EEccCCCCCCC
Q 017642 330 FNLKVNSGSAR 340 (368)
Q Consensus 330 wd~~~~~~~~~ 340 (368)
|+..+|+....
T Consensus 273 wn~~~G~ntl~ 283 (397)
T KOG4283|consen 273 WNMESGRNTLR 283 (397)
T ss_pred eecccCccccc
Confidence 99999876543
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=155.79 Aligned_cols=189 Identities=15% Similarity=0.198 Sum_probs=150.5
Q ss_pred CCeEEEEecCCCCCCCCCcEEEEeCCC----------------CcEEEEEe-cCCceeEEEEee--CccEEEe--CCcEE
Q 017642 139 CNILALVGGGPDPQYPLNKVMIWDDHQ----------------SRCIGELS-FRSEVRSVKLRR--DRIIVVL--EQKIF 197 (368)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~i~vwd~~~----------------~~~~~~~~-~~~~v~~~~~~~--~~~~l~~--d~~i~ 197 (368)
++..+.++-+.. |.|+|||+.. .+++.++. |.+.-++++|+| .|.++.. -+.|+
T Consensus 163 ~~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~ 237 (440)
T KOG0302|consen 163 GNEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIH 237 (440)
T ss_pred CCcceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceE
Confidence 355666666665 9999999753 24566676 888899999999 4555553 46899
Q ss_pred EEEcCCCeE---EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECCCCC
Q 017642 198 VYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQ 271 (368)
Q Consensus 198 vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp~g~ 271 (368)
+|...+|.- ...+.+|...|..++|+|..+.++ + +++.||.|+||+.+.. .....++|.+.|+.|.|+.+-.
T Consensus 238 lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf-a-ScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 238 LWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF-A-SCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP 315 (440)
T ss_pred eeeeccCceeecCccccccccchhhhccCCccCceE-E-eeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence 999987642 233456888999999999988744 3 4678999999998775 3334588999999999998888
Q ss_pred EEEEEeCCCcEEEEEECCC---CceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCC
Q 017642 272 LLATSSTKGTLVRIFNTLD---GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~---~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
+||+|+.||+ ++|||++. ++++..|+. |..+|++|.|+|.. ..|++++.|..|.|||+.....
T Consensus 316 lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 316 LLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 9999999999 99999985 578888988 88999999999854 5778888999999999976544
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.1e-21 Score=174.21 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=179.9
Q ss_pred CEEEEEEcC-CCCEEEEEe-CCeEEEEEecCC-CcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEe
Q 017642 87 TLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 87 ~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
.+..|.|+. +.++||+++ .+.|.+||+... .......|. .|...+..+.|+. .-.++++|+.| |.|++||
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQD-----g~vK~~D 162 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQD-----GTVKCWD 162 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCC-----ceEEEEe
Confidence 345678874 467899999 666999999862 222223454 7888899999976 45677899998 9999999
Q ss_pred CCCCcEEEEEe-cCCceeEEEEeeC-ccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642 163 DHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
++..+...++. ..+.|++|.|+|. +..++ ..|.+.+||++.. ++...+..|.++|.++.|+|++. +||+ |+
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lAT-GG 239 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLAT-GG 239 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeee-cC
Confidence 99988888877 7789999999994 34444 5789999999764 56677889999999999999665 5665 78
Q ss_pred CCCeEEEEecCcceeeee--eccCcceEEEEECCCCC-EEEEEeC--CCcEEEEEECCCCce-eEeeEeccCcccEEEEE
Q 017642 237 QKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQ-LLATSST--KGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLA 310 (368)
Q Consensus 237 ~dg~i~i~~~~~~~~~~~--~~~~~~i~~v~~sp~g~-~l~s~~~--dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~ 310 (368)
.|++|+||+.+......+ .....++.+|+|-|+.. +||+++. |-. |+|||++..-. ...+.. |...++.++
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRPYIP~~t~~e--H~~~vt~i~ 316 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRPYIPYATFLE--HTDSVTGIA 316 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccccccceeeec--cCcccccee
Confidence 999999999886433322 12356899999999876 5776654 456 99999987543 445555 778899999
Q ss_pred Eec-CCCEEEEEeCCCeEEEEEccCC
Q 017642 311 FSS-NAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 311 ~sp-~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
|.. |...|.+++.||+|..-.+++.
T Consensus 317 W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 317 WDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccCCCceeeEeecCccHHHHhhhhcc
Confidence 965 4567889999998876655544
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.6e-21 Score=150.12 Aligned_cols=198 Identities=16% Similarity=0.226 Sum_probs=157.9
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC---cEEEEEe-cCCceeEEEEee--CccEEE---eCCcEE
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIF 197 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~-~~~~v~~~~~~~--~~~~l~---~d~~i~ 197 (368)
.|...+.+...+--+..+++++.| +.|+|+.++.+ +.+.++. |.++|+.++|.. -|.+|+ .||+|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 444445444444456677888877 99999998755 4567777 999999999976 688888 699999
Q ss_pred EEEcCCCe--EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEECCC--
Q 017642 198 VYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQD-- 269 (368)
Q Consensus 198 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp~-- 269 (368)
||.-++++ .......|...+++++|.|.+-.+.|+| ++.||.|.|...+. ...+....|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 99988774 2344567889999999999999999998 78899999943332 233456789999999999985
Q ss_pred -C-----------CEEEEEeCCCcEEEEEECCCCce--eEeeEeccCcccEEEEEEecCC----CEEEEEeCCCeEEEEE
Q 017642 270 -G-----------QLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVHVFN 331 (368)
Q Consensus 270 -g-----------~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s~dg~i~iwd 331 (368)
| +.|++|+.|.. |+||+..+++- -..|.+ |...|+.++|.|.- .+|++++.||++.||.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 4 57999999999 99999887643 233555 88999999999964 4799999999999998
Q ss_pred cc
Q 017642 332 LK 333 (368)
Q Consensus 332 ~~ 333 (368)
.+
T Consensus 240 ~~ 241 (299)
T KOG1332|consen 240 KD 241 (299)
T ss_pred ec
Confidence 76
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.6e-20 Score=161.35 Aligned_cols=262 Identities=16% Similarity=0.208 Sum_probs=195.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEE
Q 017642 57 SFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEM 135 (368)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 135 (368)
+.-|.+|.|.... +.+....-...+|++.|.+|...|.|.+|++|+ |++|+||.+.++.++....+. ..|.++
T Consensus 374 ~LiPkLPsp~dLr--PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d----~~I~~v 447 (733)
T KOG0650|consen 374 SLIPKLPSPKDLR--PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD----SEIRSV 447 (733)
T ss_pred HhcccCCChhhcC--CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec----ceeEEE
Confidence 3444444444433 333445567889999999999999999999999 777999999999988665552 356666
Q ss_pred EEeCC--eEEEEecCCC---------------------------CCCCCCcEEEEeCCCC-----cEEEEEecCCceeEE
Q 017642 136 LFRCN--ILALVGGGPD---------------------------PQYPLNKVMIWDDHQS-----RCIGELSFRSEVRSV 181 (368)
Q Consensus 136 ~~~~~--~~~~~s~~~d---------------------------~~~~~~~i~vwd~~~~-----~~~~~~~~~~~v~~~ 181 (368)
+|++. ..+++.+... ..+.++.+..|.-... .....+.|...|..+
T Consensus 448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred EecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 66653 2222222211 0123455667753311 122345699999999
Q ss_pred EEeeCccEEE------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeee
Q 017642 182 KLRRDRIIVV------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI 254 (368)
Q Consensus 182 ~~~~~~~~l~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~ 254 (368)
.|+..|.+++ ....|.|+++...+...-|....+.+.++.|+|....+++++ ...|+|++... ..++.+
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKL 603 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHH
Confidence 9999999998 246899999987766666666677899999999998877665 57899966544 555566
Q ss_pred eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 255 ~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
......|..++++|.|.-|+.|+.|+. +..||+.-. ++.+.++. |...+++|+|++.-.++++|+.||++.||.
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 666778999999999999999999999 999999754 55666666 788999999999999999999999999885
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=9e-20 Score=151.20 Aligned_cols=239 Identities=10% Similarity=0.131 Sum_probs=169.0
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe--CCe-EEEEEecCCCc--------------ceEEEcccCCceeEEEEEEeCCeE-
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT--DHG-FRIYNCDPFRE--------------IFRRDFERGGGIGVVEMLFRCNIL- 142 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~--d~~-i~iw~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~- 142 (368)
.-.|.+.++.+.-++-|+-.++++ +.+ |+||++...-. .....+. +|...-+.+.|+|-..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeeccccccc
Confidence 346777888888877765444443 555 99999843211 1112333 6777788888888322
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCcEEEE---Ee-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCC---eEEEEEe
Q 017642 143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGE---LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL---KLLHQIE 211 (368)
Q Consensus 143 ~~~s~~~d~~~~~~~i~vwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~---~~~~~~~ 211 (368)
.+++|.-- +.|++|...+|..... +. |...|..++|+|...-++ .||.|+|||++.+ .++.+ +
T Consensus 226 ~LlsGDc~-----~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 226 RLLSGDCV-----KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred ccccCccc-----cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence 24444433 7899999888754322 22 999999999999765444 5999999999988 33333 7
Q ss_pred ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEE
Q 017642 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIF 286 (368)
Q Consensus 212 ~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iw 286 (368)
.|...|+.+.|+..-. +||+ |+.||+++||+.+. .++..++-|..+|++|.|+|.. ..|++++.|.. |.||
T Consensus 300 Ah~sDVNVISWnr~~~--lLas-G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiW 375 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREP--LLAS-GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIW 375 (440)
T ss_pred ccCCceeeEEccCCcc--eeee-cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEE
Confidence 8899999999987765 5564 89999999998765 5667899999999999999954 47888888988 9999
Q ss_pred ECCCCc----------------eeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEE
Q 017642 287 NTLDGT----------------LLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN 331 (368)
Q Consensus 287 d~~~~~----------------~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd 331 (368)
|+.... +.+-+..|.....+..|.|++.- .+|++.+.|| +.||.
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 985321 11112222224478889999854 4778888888 66664
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=9.2e-20 Score=165.05 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=136.5
Q ss_pred CceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEE---eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc
Q 017642 176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (368)
Q Consensus 176 ~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~ 249 (368)
..+++++.++.|.+.+ +.|.|-+|++++|.....+ ..|..+|..++...-++ .+++ ++.+|.+.+|+...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~--~~vs-a~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR--LLVS-AGADGILKFWDFKKK 525 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc--eEEE-ccCcceEEEEecCCc
Confidence 5688899999998887 5899999999999888888 47889999888765554 3444 568999999999887
Q ss_pred eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642 250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (368)
Q Consensus 250 ~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i 329 (368)
.+..--.-...+.++..+.....++.+..|-. |+++|+.+.+.+++|.+ |...|++++|||||++|++++.|++|++
T Consensus 526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred ceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 75443344567888888888889999999988 99999999999999998 8899999999999999999999999999
Q ss_pred EEccCCCCCCCC
Q 017642 330 FNLKVNSGSARS 341 (368)
Q Consensus 330 wd~~~~~~~~~~ 341 (368)
||+-++..+...
T Consensus 603 wDlpt~~lID~~ 614 (910)
T KOG1539|consen 603 WDLPTGTLIDGL 614 (910)
T ss_pred EeccCcceeeeE
Confidence 999999887643
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.8e-20 Score=157.91 Aligned_cols=236 Identities=15% Similarity=0.165 Sum_probs=182.4
Q ss_pred CEEEEEEcCCCCEEEEEe---CCeEEEEEecCCC--cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 87 TLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
.+.++.|+.... |++++ |..+++|.-.... ........ +. ...|+.......++++++.. +.|+||
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-gd--~~~Cv~~~s~S~y~~sgG~~-----~~Vkiw 106 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-GD--NAFCVACASQSLYEISGGQS-----GCVKIW 106 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccc-cc--hHHHHhhhhcceeeeccCcC-----ceeeeh
Confidence 589999988765 44433 6669999754321 12222221 22 33334444445888888887 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCC-CeeEEEEecCCCeEEEEeecC
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~g~ 236 (368)
|++...+.+.++ |...|+++.++-...+++ ..|.|.|..+.++.....|....+ .+..+.|++..+.++. +.+
T Consensus 107 dl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~--~as 184 (673)
T KOG4378|consen 107 DLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS--IAS 184 (673)
T ss_pred hhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE--eec
Confidence 999777777777 999999999999888888 478999999999988888865534 4557899998886443 356
Q ss_pred CCCeEEEEecCccee--eeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642 237 QKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (368)
Q Consensus 237 ~dg~i~i~~~~~~~~--~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 313 (368)
.+|.|.+|+.++... ...+.|..+...|+|+|... +|++.+.|.. |.+||+...+....+.. ..+...++|++
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~y---~~Plstvaf~~ 260 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLTY---SHPLSTVAFSE 260 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceeee---cCCcceeeecC
Confidence 899999999988543 33578999999999999654 8899999999 99999998877777663 55899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCC
Q 017642 314 NAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 314 ~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
+|.+|+.|...|.|..||++..+.
T Consensus 261 ~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 261 CGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred CceEEEeecCCceEEEEecccCCC
Confidence 999999999999999999986543
No 134
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5e-20 Score=149.60 Aligned_cols=246 Identities=15% Similarity=0.167 Sum_probs=193.3
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEe------cC--------CCcc-----------------------
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNC------DP--------FREI----------------------- 119 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~------~~--------~~~~----------------------- 119 (368)
.....+|.+.|++++|++.+.++++++ |.+..||.. .. .+..
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR 262 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR 262 (481)
T ss_pred eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence 456789999999999999999999999 888999972 11 0000
Q ss_pred -eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCC
Q 017642 120 -FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQ 194 (368)
Q Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~ 194 (368)
....+ .+|...+.+..|-..+..+++++.| .+-.+||+++++.+..+. |....+.++-+|..++++ .|.
T Consensus 263 vPl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWD-----RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 263 VPLMRL-TGHRAVVSACDWLAGGQQMVTASWD-----RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred eeeeee-eccccceEehhhhcCcceeeeeecc-----ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc
Confidence 00112 2566667777777788888888888 999999999999999998 999999999999999888 588
Q ss_pred cEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC
Q 017642 195 KIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ 271 (368)
Q Consensus 195 ~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~ 271 (368)
+.++||++.. ..+..|++|...|+++.|..+.+ ++ +|+.|.+|++|+... ..+.++. ...+++.++.+..+.
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---vV-SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---VV-SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP 411 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEecCCc---ee-ecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc
Confidence 9999999743 45678899999999999998886 44 489999999988765 2333443 356789999998888
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEeeEe---ccCcccEEEEEEecCC--CEEEEEeCCCeEEEEEccCCC
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQEVRR---GADRAEIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~--~~l~s~s~dg~i~iwd~~~~~ 336 (368)
+|+.--.+.. |++||+. |..+..+.. ..|..-|.|++|..+. .-|++++.|+.+.=|++..+.
T Consensus 412 iIAiPhDNRq-vRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 412 IIAIPHDNRQ-VRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eEEeccCCce-EEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8888888888 9999985 444444431 1267789999998654 357899999999999998765
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=1.7e-18 Score=151.05 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=156.8
Q ss_pred CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (368)
Q Consensus 98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~ 175 (368)
.++++++ |+.+++||+.+++.. ..+. .+ ..+..+.+++++..+ +++..+ +.|++||..+++....+...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~--~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT--RTFP-VG-QRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE--EEEE-CC-CCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCC
Confidence 4667777 888999998876644 3343 22 234567888877544 555555 89999999999888777644
Q ss_pred CceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC-eEEEEecCcce
Q 017642 176 SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKR 250 (368)
Q Consensus 176 ~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg-~i~i~~~~~~~ 250 (368)
..+..+++++++..++ .++.|++||+++++.+..+.. ...+..++|+|+++.+++ +..++ .+.+|+.....
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~---~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVN---TSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEE---EecCCCeEEEEeCCCCe
Confidence 5567889999988665 378999999998887777753 234577999999986433 22343 45556655433
Q ss_pred eeeeeccCcceEEEEECCCCCEEEEE-eCCCcEEEEEECCCCceeEeeEecc---C--cccEEEEEEecCCCEEEEE-eC
Q 017642 251 TKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA---D--RAEIYSLAFSSNAQWLAVS-SD 323 (368)
Q Consensus 251 ~~~~~~~~~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~---~--~~~v~~l~~sp~~~~l~s~-s~ 323 (368)
..........+.+++|+++|++|+.+ ..++. |++||+.+++.+..+.... + ......++|+|++++++++ +.
T Consensus 149 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 149 IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 32211223346789999999987554 45888 9999999998877665311 1 1123568899999986543 55
Q ss_pred CCeEEEEEccCCCCC
Q 017642 324 KGTVHVFNLKVNSGS 338 (368)
Q Consensus 324 dg~i~iwd~~~~~~~ 338 (368)
++.|.+||+++++..
T Consensus 228 ~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 228 ANRVAVVDAKTYEVL 242 (300)
T ss_pred CCeEEEEECCCCcEE
Confidence 678999999876654
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.2e-21 Score=177.88 Aligned_cols=245 Identities=14% Similarity=0.204 Sum_probs=192.7
Q ss_pred CCCEEEEEEcCCCCE----EEEEe-CCeEEEEEecCC----CcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCC
Q 017642 85 PPTLLHISFNQDHGC----FAAGT-DHGFRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP 154 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~----l~~~~-d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~ 154 (368)
..+-+.++|.+.|.. ||.|. ||.|.+||.... +......+. .|...|..+.|++... .+++|+.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~---- 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD---- 138 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC----
Confidence 346788999988776 66666 777999998652 222223343 7889999999998665 88999988
Q ss_pred CCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCC--CeeEEEEecC
Q 017642 155 LNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQG 225 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~ 225 (368)
|.|.|||++.-+.-..+. ..+.|.+++|+..-..++ .+|.+.|||++..+.+-.+..+.+ .+..+.|+|+
T Consensus 139 -geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 139 -GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred -CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 999999998755444442 567899999998654444 478999999998877776655444 3567999999
Q ss_pred CCeEEEEeecCCC-CeEEEEecCc--ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642 226 VGSLVLVCPGLQK-GQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (368)
Q Consensus 226 ~~~~~l~~~g~~d-g~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (368)
....+++++++.. -.|.+|+.+. ..++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+.++..
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~-- 294 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA-- 294 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC--
Confidence 9887777655322 2455588654 6677889999999999999966 79999999999 99999999999999987
Q ss_pred CcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCC
Q 017642 302 DRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 302 ~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
....+..+.|+|..- .+++++-||.|.||.+......
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTD 332 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence 567899999999665 7888899999999999877643
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=159.92 Aligned_cols=244 Identities=14% Similarity=0.129 Sum_probs=168.6
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEE
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~ 159 (368)
..|.+.|..+.|-|....|++++ |.++++||++..+..-...+. +|...+.+++|.+ +...|++|+.| |.|.
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRD-----g~il 170 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRD-----GEIL 170 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCC-----CcEE
Confidence 47999999999999555667766 889999999887765444343 8999999999987 45678889988 9999
Q ss_pred EEeCCCCc--------------------EE-------EEEe-cCCceeE---EEEeeCccEEE----eCCcEEEEEcCCC
Q 017642 160 IWDDHQSR--------------------CI-------GELS-FRSEVRS---VKLRRDRIIVV----LEQKIFVYNFADL 204 (368)
Q Consensus 160 vwd~~~~~--------------------~~-------~~~~-~~~~v~~---~~~~~~~~~l~----~d~~i~vwd~~~~ 204 (368)
|||++-.. .. .... +...|.+ +.+..|...|+ .|+.|+|||++..
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99976322 00 0001 2333444 55556666666 4999999999875
Q ss_pred eEEEEE--------ecc---CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee---eeeccCc---ceEEEEEC
Q 017642 205 KLLHQI--------ETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDS---RIACFALT 267 (368)
Q Consensus 205 ~~~~~~--------~~~---~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~~~~~---~i~~v~~s 267 (368)
...... ..+ ...+.++.....|.+++.-| .|+.|++|+.....+. .+.++.. .+.+ ..+
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lS 326 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELS 326 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEeccccCcCchhhccCcccceeeeee-ecC
Confidence 432221 112 22344555555667644333 5999999887764333 3333221 1222 358
Q ss_pred CCCCEEEEEeCCCcEEEEEECCCCceeE-eeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCC
Q 017642 268 QDGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 268 p~g~~l~s~~~dg~~i~iwd~~~~~~~~-~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
||+.+|++|+.|.. .++|.+.+.+.-. .+.+ |...|++++|.|.. .-++++++|.+++||++..+-..
T Consensus 327 pd~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 327 PDDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred CCCceEeccCCCcc-eeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 99999999999999 9999998866443 4444 78899999998743 34667799999999999766544
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=3.4e-18 Score=146.97 Aligned_cols=237 Identities=16% Similarity=0.237 Sum_probs=179.9
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCeEEEEEecCCCcceEE-EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 84 PPPTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 84 h~~~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
..+.|...+|+|.+. ++++.+.+.+..|+++.+...... .|+......|.++.|.+++..+.+.+. |.|.||
T Consensus 199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~------G~i~Iw 272 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG------GNILIW 272 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC------ceEEEE
Confidence 356788899999765 556666888999998876654332 344344578999999999988776554 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE------------E------------------
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL------------H------------------ 208 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~------------~------------------ 208 (368)
+..+.+..+... |.+.|.+++...+|.++. .|..|..||- .-+.+ +
T Consensus 273 ~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 273 SKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred eCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 988777766666 999999999999999998 6889999983 21111 1
Q ss_pred -----------EEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642 209 -----------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS 277 (368)
Q Consensus 209 -----------~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~ 277 (368)
...+|......++.+|+.+. +++ ++.|+.+++|+ ..+.. --+.-..++.|+.|+|.| .+|.|.
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q--~~T-~gqdk~v~lW~-~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQ--LLT-CGQDKHVRLWN-DHKLE-WTKIIEDPAECADFHPSG-VVAVGT 425 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhh--eee-ccCcceEEEcc-CCcee-EEEEecCceeEeeccCcc-eEEEee
Confidence 11234445556677777664 333 56899999998 33332 223345688999999999 999999
Q ss_pred CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
..|. ..+.|.++...+ .+.. ...++..+.|+|+|.+||.|+.|+.|+||.+.....
T Consensus 426 ~~G~-w~V~d~e~~~lv-~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 426 ATGR-WFVLDTETQDLV-TIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred ccce-EEEEecccceeE-EEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 9999 999999885555 4444 467999999999999999999999999999987654
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=161.13 Aligned_cols=256 Identities=11% Similarity=0.191 Sum_probs=197.1
Q ss_pred ccCCCCCEEEEEEcC------------CCCEEEEEe-CCeEEEEEecCCC--cceEEEcc--------------------
Q 017642 81 SSSPPPTLLHISFNQ------------DHGCFAAGT-DHGFRIYNCDPFR--EIFRRDFE-------------------- 125 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~------------~g~~l~~~~-d~~i~iw~~~~~~--~~~~~~~~-------------------- 125 (368)
.-.|...|+.+.--| .+ .+++++ |++|++|+++... ..+.+.+.
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 345666676665544 23 456666 9999999987521 11111100
Q ss_pred ------------cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeC---ccE
Q 017642 126 ------------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---RII 189 (368)
Q Consensus 126 ------------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~---~~~ 189 (368)
-+.+.++.+++.+|++..+++|+.. |+|+||++..-+....+. |...|.|+.++.. .++
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence 1345678899999999999999988 999999999988888888 9999999999863 455
Q ss_pred EE---eCCcEEEEEc-CCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeec-----cCc
Q 017642 190 VV---LEQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMA-----HDS 259 (368)
Q Consensus 190 l~---~d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~-----~~~ 259 (368)
++ .|.-|+|||+ ++..+++++.+|...|+++.|...|-..-++. ++.|..|.+.... ......+.. ...
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis-cGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS-CGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe-ccCchhhheehhccccCceeccccccccccc
Confidence 66 5889999999 45567889999999999999998885544554 3468887773322 111222222 234
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.++.|+..|..+++++++.|.. |+|||+.+++..+.|++.. |.+....+...|.|.||++.+.|++|.++|+.+++-.
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 6899999999999999999999 9999999999999998753 4578889999999999999999999999999999887
Q ss_pred CCCCCC
Q 017642 339 ARSEPR 344 (368)
Q Consensus 339 ~~~~~~ 344 (368)
...-++
T Consensus 677 A~m~GH 682 (1080)
T KOG1408|consen 677 AQMTGH 682 (1080)
T ss_pred hhhcCc
Confidence 766665
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=5.1e-20 Score=156.11 Aligned_cols=201 Identities=16% Similarity=0.221 Sum_probs=157.0
Q ss_pred cccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCc----c-eEEEcccCCceeEEEEEEeCC-eEEEEecCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFRE----I-FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDP 151 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~ 151 (368)
...+|...=+.++|++... .|++++ |++|++||+..... . ....+ ++|...|-.++|++- ...++++++|
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd- 249 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDD- 249 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCC-
Confidence 5668888788899998643 455555 88899999975443 1 22334 488888999999874 3456667776
Q ss_pred CCCCCcEEEEeCCC--CcEEEEEe-cCCceeEEEEeeCccEE-E---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEe
Q 017642 152 QYPLNKVMIWDDHQ--SRCIGELS-FRSEVRSVKLRRDRIIV-V---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVS 223 (368)
Q Consensus 152 ~~~~~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l-~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~ 223 (368)
+.+.|||+++ .++..... |.+.|.+++|+|-+.++ + .|++|.+||+|+. +++.++.+|...|..+.|+
T Consensus 250 ----~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 250 ----GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred ----CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 9999999994 45555555 99999999999965544 4 5999999999885 5688899999999999999
Q ss_pred cCCCeEEEEeecCCCCeEEEEecCc---------------ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEE
Q 017642 224 QGVGSLVLVCPGLQKGQVRVEHYAS---------------KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFN 287 (368)
Q Consensus 224 ~~~~~~~l~~~g~~dg~i~i~~~~~---------------~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd 287 (368)
|+.+. ++|+ ++.|+.+.||+... +.+..-.+|...|..+.|+|+.. .|+++++|+. +.||.
T Consensus 326 Ph~et-vLAS-Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~ 402 (422)
T KOG0264|consen 326 PHNET-VLAS-SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQ 402 (422)
T ss_pred CCCCc-eeEe-cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce-EEEee
Confidence 99987 4565 44899999998764 12234458999999999999887 6888999999 99998
Q ss_pred CC
Q 017642 288 TL 289 (368)
Q Consensus 288 ~~ 289 (368)
+.
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 75
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=4.7e-19 Score=160.51 Aligned_cols=234 Identities=15% Similarity=0.213 Sum_probs=179.6
Q ss_pred CCEEEEEEcCCC----CEEEEEe--CCeEEEEEecCCCcceEEEccc----CCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 86 PTLLHISFNQDH----GCFAAGT--DHGFRIYNCDPFREIFRRDFER----GGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 86 ~~v~~~~~s~~g----~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
.+|..+++.... .-++++. +..++.|++.+...- ...+.+ .....+.+++.+..+.+.+.|...
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G-~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~----- 469 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG-RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK----- 469 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc-cEEecCccccccCcceEEEEEeccCceEEEeccC-----
Confidence 366666665432 1244444 555999998754431 122221 244667777776666555555444
Q ss_pred CcEEEEeCCCCcEEEEE----ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642 156 NKVMIWDDHQSRCIGEL----SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (368)
|.|-+|++++|-....+ .|.++|++++...-++.++ .+|.++.||..+...+..+.. ...+.++..+....-
T Consensus 470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDL 548 (910)
T ss_pred CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhh
Confidence 99999999999988888 3999999999998887777 699999999988887777753 446677777777764
Q ss_pred EEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEE
Q 017642 229 LVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (368)
+.+ +..|-.|++ +..+.+.++.+.+|.+.|+.++|||||++|++++.|++ |++||+.++.++-.+.. +.++.
T Consensus 549 ~a~---~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~v---d~~~~ 621 (910)
T KOG1539|consen 549 LAI---ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLLV---DSPCT 621 (910)
T ss_pred hhh---hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEec---CCcce
Confidence 333 446888888 66666778889999999999999999999999999999 99999999999988774 56899
Q ss_pred EEEEecCCCEEEEEeCC-CeEEEEEcc
Q 017642 308 SLAFSSNAQWLAVSSDK-GTVHVFNLK 333 (368)
Q Consensus 308 ~l~~sp~~~~l~s~s~d-g~i~iwd~~ 333 (368)
++.|+|+|.+||+...| .-|++|-=.
T Consensus 622 sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 622 SLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eeEECCCCCEEEEEEecCceEEEEEch
Confidence 99999999999999877 569999643
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=7.2e-18 Score=144.97 Aligned_cols=229 Identities=17% Similarity=0.256 Sum_probs=174.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (368)
Q Consensus 86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~ 165 (368)
.-|.|++|.++|..+..-+++.|.||+... ....+... .|...+.+++.-.++..+. ++.| ..|..||- .
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~--~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd~-~ 316 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGT--NRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWDD-N 316 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCC--ceEEeEee-ecCCceEEEEEecCccEee-cCcc-----ceEEeccc-c
Confidence 579999999999865544477799999643 33334443 7889999999999998887 8887 99999982 2
Q ss_pred CcE------------------------------------------EEEEecCCceeEEEEeeCccEEE---eCCcEEEEE
Q 017642 166 SRC------------------------------------------IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYN 200 (368)
Q Consensus 166 ~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd 200 (368)
-+. +..+.|....+.++.+|+...++ .|+.+++|+
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 110 01112666788888888776666 599999999
Q ss_pred cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC
Q 017642 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (368)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg 280 (368)
..+++.+.. ...+..++.|+|.| .++. |...|...+.+.+.+.+.++.....++++++|+|+|.+||.|+.|+
T Consensus 397 --~~k~~wt~~-~~d~~~~~~fhpsg---~va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 397 --DHKLEWTKI-IEDPAECADFHPSG---VVAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred --CCceeEEEE-ecCceeEeeccCcc---eEEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 555555443 45688899999999 3454 7778888886666566556655588999999999999999999999
Q ss_pred cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
. |+||-+..........+..+..+|+.+.||+|+++|.+-+.|-.|..|.-
T Consensus 470 ~-iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 470 H-IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred e-EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 9 99999876544444333335589999999999999999999999999943
No 143
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.9e-18 Score=140.27 Aligned_cols=221 Identities=13% Similarity=0.208 Sum_probs=168.9
Q ss_pred EEEEe-CCeEEEEEecCCC------cc--e--EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642 100 FAAGT-DHGFRIYNCDPFR------EI--F--RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (368)
Q Consensus 100 l~~~~-d~~i~iw~~~~~~------~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~ 168 (368)
+++|+ +..|.=++++... .. + ...+ +.|...+.+++. ++.++++|+.| -+|+|||+.....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~q 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQ 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhh
Confidence 45566 6666666665332 11 1 1122 367777777776 56788999988 9999999999888
Q ss_pred EEEEe-cCCceeEEEEeeCc---cEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642 169 IGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (368)
Q Consensus 169 ~~~~~-~~~~v~~~~~~~~~---~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~ 242 (368)
+..+- |.+.|+++.|.++. .++. .||.|.+|+....+++..++.|.+.|+.++++|.++- .|. -+.|+.++
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL-ALs--Vg~D~~lr 152 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKL-ALS--VGGDQVLR 152 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCce-EEE--EcCCceee
Confidence 88877 99999999999876 3444 7999999999999999999999999999999999973 333 34699999
Q ss_pred EEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642 243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (368)
Q Consensus 243 i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 322 (368)
+|+.-.........-....+.|.|+|.|.+++.+..++ |-||.+.+.....++.. ...+.++.|. ++..|++|+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG 226 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence 98865544433333333445699999999999988886 89999988877766653 3467788875 567888999
Q ss_pred CCCeEEEEEccCCCC
Q 017642 323 DKGTVHVFNLKVNSG 337 (368)
Q Consensus 323 ~dg~i~iwd~~~~~~ 337 (368)
+|+.|.+||.+....
T Consensus 227 d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTP 241 (362)
T ss_pred CCceEEEeccCCCcc
Confidence 999999999987444
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.7e-19 Score=160.14 Aligned_cols=226 Identities=14% Similarity=0.137 Sum_probs=173.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc-eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
+...|.+++.. +.+|++|+ ++.|.+|....++.. ... .-...+..++++.++..++.|++| -.|++.
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~----Rftlp~r~~~v~g~g~~iaagsdD-----~~vK~~ 123 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILA----RFTLPIRDLAVSGSGKMIAAGSDD-----TAVKLL 123 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceee----eeeccceEEEEecCCcEEEeecCc-----eeEEEE
Confidence 66778887754 44888888 788999998776654 222 233457788899999999999988 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEecc--------CCCeeEEEEecCCCeE
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--------ANPKGLCAVSQGVGSL 229 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~ 229 (368)
++.+......+. |.++|.++.|+|++.+++ .||.|++||+.++.+..++.+- ...+..++|+|++..+
T Consensus 124 ~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l 203 (933)
T KOG1274|consen 124 NLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL 203 (933)
T ss_pred eccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE
Confidence 999988888887 999999999999999999 5999999999998876666431 2345668999998876
Q ss_pred EEEeecCCCCeEEEEecCc-ceeeeee--ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642 230 VLVCPGLQKGQVRVEHYAS-KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~-~~~~~~~--~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
++.. .|+.|++++..+ .....+. .+...+..+.|+|+|+|||+++.||. |.|||..+.+. +. ....|
T Consensus 204 a~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t~~~-~~-----~~~~V 273 (933)
T KOG1274|consen 204 AVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDTHER-HE-----FKRAV 273 (933)
T ss_pred Eeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEecccchh-cc-----cccee
Confidence 5544 589999966655 3333333 34455999999999999999999999 99999988333 22 23479
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEE
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iw 330 (368)
.+++|.|++..+-.-...|...+|
T Consensus 274 c~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 274 CCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEecCCCCCeeEEEeeccccccC
Confidence 999999998866544445544444
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=4.1e-18 Score=139.09 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=178.0
Q ss_pred ccccCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEEecCCCcc--eEEEcccCCceeEEEEEE--eCC--eEEEEec
Q 017642 79 STSSSPPPTLLHISFNQ-----DHGCFAAGTDHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLF--RCN--ILALVGG 147 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~-----~g~~l~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~--~~~~~s~ 147 (368)
.+...|..+|..++|++ +-..+|+.+.+.+.||+....... +.......+......++| ..+ ..+++.+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 45567888999999984 234677777888999998755422 222222224444444444 322 4555555
Q ss_pred CCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE---eccCCCeeE
Q 017642 148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI---ETIANPKGL 219 (368)
Q Consensus 148 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~---~~~~~~v~~ 219 (368)
+.- |.|+|.|+.++++...+. |...|..+.+.|+...++ .|..|++|++++..++..+ .+|.+.|.+
T Consensus 112 G~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 112 GYL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred cce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 555 999999999999999988 999999999999874443 5999999999999999887 568899999
Q ss_pred EEEecCCCeEEEEeecCCCCeEEEEecCccee-----------------------e------eeeccCc-----------
Q 017642 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------K------FIMAHDS----------- 259 (368)
Q Consensus 220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-----------------------~------~~~~~~~----------- 259 (368)
+.|+.+|+. +++ ++.|..+++|..+.+.. . +-.-|..
T Consensus 187 vD~~~~gd~--i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ 263 (385)
T KOG1034|consen 187 VDFSLDGDR--IAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF 263 (385)
T ss_pred EEEcCCCCe--eec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence 999999994 554 66899999998762100 0 0000111
Q ss_pred -------------------------------------------ceEEE--EECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642 260 -------------------------------------------RIACF--ALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (368)
Q Consensus 260 -------------------------------------------~i~~v--~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~ 294 (368)
.|.-| +|.+.++.||.|...|. |.+||++..++.
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~-v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK-VYVWDLDNNEPP 342 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCc-EEEEECCCCCCc
Confidence 12222 34566788999999999 999999987653
Q ss_pred --EeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 295 --QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 295 --~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
.++........|...+|+.||.+|+..++|++|.-||..
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 223322234579999999999999999999999999864
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=142.16 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=167.2
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
..+.|...|+++.|..+++ |.+|. .+-|++|++.+........+ .+...+..+..-++ ..+.+-++| ..+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd-----~~L 79 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRD-----PLL 79 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCC-----ceE
Confidence 4458899999999988777 66676 66699999988776644332 45666777766666 455666666 888
Q ss_pred EEEeCCCCcEEEE--------------E-----------e-----------------------------cCCceeEEEEe
Q 017642 159 MIWDDHQSRCIGE--------------L-----------S-----------------------------FRSEVRSVKLR 184 (368)
Q Consensus 159 ~vwd~~~~~~~~~--------------~-----------~-----------------------------~~~~v~~~~~~ 184 (368)
.+|++.-+..+.. + . ..+.+.+..+.
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 8888665211100 0 0 11234444422
Q ss_pred e-CccEEE-----eCCcEEEEEcCCCeE----------EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc
Q 017642 185 R-DRIIVV-----LEQKIFVYNFADLKL----------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (368)
Q Consensus 185 ~-~~~~l~-----~d~~i~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~ 248 (368)
. ++..++ .+|.+.+||+.++.. ......|..++.++.+.+.-+.-+ +|+.+..+..|..+.
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNH 236 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc---CCCccccceeeeecc
Confidence 2 233322 589999999988733 333345778888888876543312 355566666655443
Q ss_pred c-----eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC
Q 017642 249 K-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323 (368)
Q Consensus 249 ~-----~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 323 (368)
. ....+.-..-.|..+.+-||++++|+++.|++ ||||..++.+++..++- |.+.|++++|+|+..++|+++.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccC
Confidence 2 12223334456889999999999999999999 99999999999999987 7899999999999999999999
Q ss_pred CCeEEEEEc
Q 017642 324 KGTVHVFNL 332 (368)
Q Consensus 324 dg~i~iwd~ 332 (368)
|++|-+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999986
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=1.2e-18 Score=154.93 Aligned_cols=250 Identities=16% Similarity=0.199 Sum_probs=179.8
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc----cCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQY 153 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~d~~~ 153 (368)
.+..+|++.|+++.|+|++..|++++ |+++.+|.-+....+...... .+...+.....|++++..+++-+..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~--- 337 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT--- 337 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence 45569999999999999997777777 999999997766554443322 1334568889999999888888876
Q ss_pred CCCcEEEEeCCCC-cEEEE--Ee-cCCceeEEEEeeCccEEE---eCCcEEEEEcC--------------------C---
Q 017642 154 PLNKVMIWDDHQS-RCIGE--LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA--------------------D--- 203 (368)
Q Consensus 154 ~~~~i~vwd~~~~-~~~~~--~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~--------------------~--- 203 (368)
|..++|..++. ..... +. |.+.|++++|.|.|.+++ .|.+-|+|--- .
T Consensus 338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 99999983332 22222 22 888999999999888777 35554443221 0
Q ss_pred ------------CeE-----------------------------------------------------------------
Q 017642 204 ------------LKL----------------------------------------------------------------- 206 (368)
Q Consensus 204 ------------~~~----------------------------------------------------------------- 206 (368)
.+.
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 000
Q ss_pred ----------------------EEEEeccCCCeeEEEEecCCCeEEEEeecC--CCCeEEEEecCc-ceeeeeeccCcce
Q 017642 207 ----------------------LHQIETIANPKGLCAVSQGVGSLVLVCPGL--QKGQVRVEHYAS-KRTKFIMAHDSRI 261 (368)
Q Consensus 207 ----------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~--~dg~i~i~~~~~-~~~~~~~~~~~~i 261 (368)
++.+.+|...|.+++.+|+++-++-+|-.+ ....|++|.... ..+..+..|.-.|
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV 575 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence 111115666778888888888432222111 123466677655 5566799999999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE---eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR---RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 262 ~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~---~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
+.++|+|||++|++++.|++ +.+|........ .+. ...|..-|++..|+|++.+++++|.|.+|+||.....
T Consensus 576 T~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEECCCCcEEEEeecCce-EEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999999999999 999987543221 111 2338889999999999999999999999999999887
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=9.2e-19 Score=155.65 Aligned_cols=246 Identities=13% Similarity=0.129 Sum_probs=184.3
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
...++|.+.|..++|.|.|++|++.+ |.+-|||---..+.... .+. .-|.....++++-+....++++.+.
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wH-EiaRPQiHGyDl~c~~~vn~~~~FVSgAdE----- 428 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWH-EIARPQIHGYDLTCLSFVNEDLQFVSGADE----- 428 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeeccccccccee-eecccccccccceeeehccCCceeeecccc-----
Confidence 45679999999999999999998888 99988876432222111 111 2455666777777756667777665
Q ss_pred CcEEEEeCCC-------------------------------------------CcE------------------------
Q 017642 156 NKVMIWDDHQ-------------------------------------------SRC------------------------ 168 (368)
Q Consensus 156 ~~i~vwd~~~-------------------------------------------~~~------------------------ 168 (368)
..+|+|+... |..
T Consensus 429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 6777775321 100
Q ss_pred ----------EEEEecCCceeEEEEeeCccEEEe--------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642 169 ----------IGELSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 169 ----------~~~~~~~~~v~~~~~~~~~~~l~~--------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
.+.+.|...|.+++.+|+++++++ ...|++|+..+-...+.+..|.-.|+.++|+||+++++
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence 011236678999999999999992 45799999988888888999999999999999999644
Q ss_pred EEeecCCCCeEEEEecCcce-----eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeEeeEeccCc
Q 017642 231 LVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGADR 303 (368)
Q Consensus 231 l~~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~~ 303 (368)
- .+.|.++.+|...... ....+.|..-|..+.|+|++++++|++.|.+ |+||..... +.+..+....+.
T Consensus 589 s---vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~~~~ 664 (764)
T KOG1063|consen 589 S---VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACLKFS 664 (764)
T ss_pred E---eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchhccC
Confidence 2 4589999998764422 2236789999999999999999999999999 999998877 555443333367
Q ss_pred ccEEEEEEecC-----CCEEEEEeCCCeEEEEEccC
Q 017642 304 AEIYSLAFSSN-----AQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 304 ~~v~~l~~sp~-----~~~l~s~s~dg~i~iwd~~~ 334 (368)
..|+.++|.|- +..+++|-+.|.|.+|....
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred CceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 79999999762 23677888999999999763
No 149
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.2e-20 Score=152.42 Aligned_cols=203 Identities=13% Similarity=0.161 Sum_probs=155.2
Q ss_pred CCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEE---
Q 017642 127 GGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYN--- 200 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd--- 200 (368)
+|..+|.+++-+|+. ..+++|+.| |.|++||+.+.++...++ |.+.|.++++.....+-+ .|.+|+.|.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~D-----G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCD-----GEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred ccccccchhhcCcchhhhhhccccC-----ceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence 888999999999887 567888888 999999999999999999 999999999887333323 455555554
Q ss_pred -----------------------------------cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe
Q 017642 201 -----------------------------------FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (368)
Q Consensus 201 -----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~ 245 (368)
.+-..+++.+......+.++.|+|-... +|++ +..|+.|.+++
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas-~~sDrsIvLyD 216 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILAS-CASDRSIVLYD 216 (433)
T ss_pred CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcch-heee-eccCCceEEEe
Confidence 4333344555555556777888887765 4555 45688898855
Q ss_pred cC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEecCCCEEEEEeC
Q 017642 246 YA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323 (368)
Q Consensus 246 ~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 323 (368)
.. ..+++.+. -...-+.|+|+|.+-.+++|++|.. ++.||++..+ ++....+ |...|.+++|||.|+-+++||.
T Consensus 217 ~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 217 LRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred cccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCCcchhccccc
Confidence 44 44444332 2234578999998878999999999 9999998754 5556666 7889999999999999999999
Q ss_pred CCeEEEEEccCCCCCCC
Q 017642 324 KGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 324 dg~i~iwd~~~~~~~~~ 340 (368)
|.+|+||.++.+...+.
T Consensus 293 DksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cceEEEeecCCCcchhh
Confidence 99999999988876653
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=142.79 Aligned_cols=197 Identities=17% Similarity=0.213 Sum_probs=149.3
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc-----EEEEEecCCceeEEEEeeCccEEE----eCCcEE
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRRDRIIVV----LEQKIF 197 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~ 197 (368)
+|...+.+++|+.++..+++++.| +.|++|++++.+ +++.--.-+..+.+.|.||-+-++ ...+++
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 889999999999999999999998 999999987642 222111334678899999977665 477899
Q ss_pred EEEcCC---CeEEEE--------E-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEE
Q 017642 198 VYNFAD---LKLLHQ--------I-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA 265 (368)
Q Consensus 198 vwd~~~---~~~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~ 265 (368)
+|.+.. |..... + +.|.-.+..+-+ -+...++.+ ++.|..|.+|+..++.+..+......-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEE-ecCCCcEEEEecCCceeeeecccccccccee
Confidence 998732 221111 1 122223333333 333335554 7789999999999999988887777778889
Q ss_pred ECCCCCEEEEEeCCCcEEEEEECC---CC-----ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 266 LTQDGQLLATSSTKGTLVRIFNTL---DG-----TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~---~~-----~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
.+|+|++|++++-.-. |+||++- .| ..+..+++ |...|..++|+++...+++.+.||+++|||++-
T Consensus 236 vSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 9999999999998888 9999863 22 23455666 889999999999999999999999999999864
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=9.2e-19 Score=155.19 Aligned_cols=231 Identities=15% Similarity=0.244 Sum_probs=174.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~ 166 (368)
.|+.++|-|||..|+.+.++.+.+||.+.+... ..+. +|...|.+++|+.++..+++|+.| ..|.+|+ ...
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~aD-----K~VI~W~-~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWT-SKL 84 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCCCc-----eeEEEec-ccc
Confidence 799999999999999999899999998766655 6676 999999999999999999999998 9999998 444
Q ss_pred cEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642 167 RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (368)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~ 244 (368)
+-+..+.|.+.|.||.|+|-...++ .=...-+|........+ . .....+.+++|..||..+++ |-.+|+|.+-
T Consensus 85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylal---G~~nGTIsiR 159 (1081)
T KOG1538|consen 85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLAL---GMFNGTISIR 159 (1081)
T ss_pred cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEE---eccCceEEee
Confidence 4556677999999999999887777 34566788865443221 1 12346778889989886443 6679999885
Q ss_pred ecCcceeeeee---ccCcceEEEEEC----------------------------------------------CCCCEEEE
Q 017642 245 HYASKRTKFIM---AHDSRIACFALT----------------------------------------------QDGQLLAT 275 (368)
Q Consensus 245 ~~~~~~~~~~~---~~~~~i~~v~~s----------------------------------------------p~g~~l~s 275 (368)
+..++....+. +...+|.+++|+ ++|.++..
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 55443322222 234445555444 45677777
Q ss_pred EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
|+.|+. +++|- +.|-.+.++-. .+..|+.++..|++++++.|+.||+|..|++-..
T Consensus 240 GGsdk~-L~~fT-R~GvrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 240 GGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ccCCCc-eEEEe-ecCeEEeeccc--cceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 777777 77774 56666655544 4568999999999999999999999999998643
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-18 Score=149.75 Aligned_cols=216 Identities=10% Similarity=0.162 Sum_probs=173.0
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~ 165 (368)
.-.|++......++++|+ .+.|+|||+.. ..+.+.+. +|...|.++.|+.+..++++++.. |.|.|..+.+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t 152 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKT 152 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhcc-CCcceeEEEEecCCcceeEEeccC-----CcEEEEeccc
Confidence 445555555668888888 66799999983 33335565 888999999999999999988876 9999999999
Q ss_pred CcEEEEEec--CCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642 166 SRCIGELSF--RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (368)
Q Consensus 166 ~~~~~~~~~--~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~d 238 (368)
+....+|.+ ...|+-+.|++..+.++ .+|.|.+||+....++..+ +.|..+...++|+|..+.+++.. | .|
T Consensus 153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-G-~D 230 (673)
T KOG4378|consen 153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-G-YD 230 (673)
T ss_pred CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-c-cc
Confidence 998888884 45677999999887776 5899999999877666554 67888999999999988654433 4 79
Q ss_pred CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCC
Q 017642 239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA 315 (368)
Q Consensus 239 g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~ 315 (368)
..|.+++...+....--....+...++|.++|.+|+.|+..|. |..||++.. .++..+.. |...|++++|-+..
T Consensus 231 kki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence 9999988776554444455678999999999999999999999 999999864 45666665 78889999998754
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=3.4e-18 Score=145.28 Aligned_cols=249 Identities=11% Similarity=0.089 Sum_probs=182.5
Q ss_pred cccccCCCCCEEEEEEcCCCC--EEEEEe-CCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeCCe-EEEEecCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHG--CFAAGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDP 151 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~ 151 (368)
......+.+.|++++|+|... ++|+|+ -|.|-+||+...+.. ....+ +.|...|.++.|+|.. ..+.+.+.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~i~ssSyD- 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQIYSSSYD- 256 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhheeeeccC-
Confidence 455677899999999999754 677777 555999999533222 11233 3788899999998854 456666666
Q ss_pred CCCCCcEEEEeCCCCcE--EEEEe-cCCceeEEEEeeCccEEE-e--CCcEEEEEcCCCeE-EEEEeccCCCeeEEEEec
Q 017642 152 QYPLNKVMIWDDHQSRC--IGELS-FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKL-LHQIETIANPKGLCAVSQ 224 (368)
Q Consensus 152 ~~~~~~i~vwd~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~ 224 (368)
|+|++-|++.+.. +..+. ....+..+.|+.+...++ . =|...+||++++.. ...+..|...|..++++|
T Consensus 257 ----GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 257 ----GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ----ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 9999999987643 33332 344567777877655444 2 25889999987654 556667888999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEecCc---c--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC----CCceeE
Q 017642 225 GVGSLVLVCPGLQKGQVRVEHYAS---K--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL----DGTLLQ 295 (368)
Q Consensus 225 ~~~~~~l~~~g~~dg~i~i~~~~~---~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~----~~~~~~ 295 (368)
...+ +++ +++.|++.+||+... + +......|...|.++.|||.+-.|++.+.|.. |+|||.. ..++..
T Consensus 333 ~~p~-~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 333 VCPW-FLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCch-hee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccc
Confidence 9887 344 477999999998764 1 12344579999999999998888999999999 9999983 344444
Q ss_pred eeEeccCc----ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 296 EVRRGADR----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 296 ~~~~~~~~----~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
.+... +. -......|.|+..++++|-.-..|-|+|-+.++
T Consensus 410 ~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 410 TIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eeecc-CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 44411 11 124456899999999999988899999988877
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.1e-17 Score=146.80 Aligned_cols=230 Identities=15% Similarity=0.211 Sum_probs=173.3
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE-EEe--cCCceeEEEEeeCccEEE--eCCcEEEEEcC
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA 202 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~ 202 (368)
.+..+.+++++.+...++.+-.+ |.|.+|++..+=... .+. ....|.+++|.+.++++. .+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~-----g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTD-----GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccC-----CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence 45678899998887778887777 999999998763332 333 567899999998888777 69999999999
Q ss_pred CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee---eeeccCcceEEEEECCCCCEEEEEeCC
Q 017642 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLATSSTK 279 (368)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~~~~~~i~~v~~sp~g~~l~s~~~d 279 (368)
+++....+....+.+++++.+|.++.+. . |+.||.+.........+. .+...++.|.+++|++++..|+.|+.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~--I-gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILA--I-GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEE--e-ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999997533 3 678996655555544433 244556889999999999999999999
Q ss_pred CcEEEEEECCCCceeEeeEe-----cc-CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCCC---CCC
Q 017642 280 GTLVRIFNTLDGTLLQEVRR-----GA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS---DPT 350 (368)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~ 350 (368)
|. |++||..++..++.... .. ...-|+++.|-.++ .|++|..-|+|.+||-..+.....-..+.++ ...
T Consensus 176 g~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 176 GV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV 253 (691)
T ss_pred ce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence 99 99999999987763221 11 23468888888654 6889999999999999999877654444332 122
Q ss_pred ccCCCcccccceeeeee
Q 017642 351 LPTSSLSFIKGEESIFI 367 (368)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ 367 (368)
......-|..|.-|+.|
T Consensus 254 ~~~~d~vfsaGvd~~ii 270 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKII 270 (691)
T ss_pred cCCCCeEEEccCCCceE
Confidence 33344556666655443
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8.4e-18 Score=136.61 Aligned_cols=193 Identities=13% Similarity=0.150 Sum_probs=155.4
Q ss_pred EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE
Q 017642 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL 207 (368)
Q Consensus 132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~ 207 (368)
..++.|++.|.+++.|..| |.|.|||+.+....+.+. |-.+|.+++|++||+.++ .|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 7789999999999999988 999999999998888887 999999999999999998 5999999999999999
Q ss_pred EEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeecc-----CcceEEEEECCCCCEEEEEeCCCcE
Q 017642 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----DSRIACFALTQDGQLLATSSTKGTL 282 (368)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~-----~~~i~~v~~sp~g~~l~s~~~dg~~ 282 (368)
+.+. ...+|..+.|+|...+.++++-- +..-.+-.........+... .....+..|++.|+++++|...|.
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk- 176 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK- 176 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence 8886 57799999999998887777632 22222211111111111110 111233468999999999999999
Q ss_pred EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
+.|+|..+.+++..++.. ....|..+.|+..|+.|+.-+.|+.||.|+++.
T Consensus 177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 999999999999988863 236899999999999999999999999999873
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.3e-17 Score=139.83 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=174.0
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEeCCe-EEEEEec--------C------CCcceEEEcccCCceeEEEEEEeCCeEE
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFERGGGIGVVEMLFRCNILA 143 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~d~~-i~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (368)
+..+.|...|+++.|+|+|.+||+|+|++ |.+|... + ......+.+. +|...+..++|.+++.+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNF 137 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCce
Confidence 56678999999999999999999999555 9999865 1 1122334454 78899999999999999
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEe--------
Q 017642 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE-------- 211 (368)
Q Consensus 144 ~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~-------- 211 (368)
+++++-| +.+++||+..|.....+. |...|..++|.|-+++++ .|...+.+.+...+.++...
T Consensus 138 l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 138 LVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred eeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 9999988 999999999999999988 999999999999999888 46666666664433222211
Q ss_pred c--cCC-------------CeeEEEEecCCCeEEEEeecCCCCeEEE---------EecCc----ceeeeeeccCcceEE
Q 017642 212 T--IAN-------------PKGLCAVSQGVGSLVLVCPGLQKGQVRV---------EHYAS----KRTKFIMAHDSRIAC 263 (368)
Q Consensus 212 ~--~~~-------------~v~~~~~~~~~~~~~l~~~g~~dg~i~i---------~~~~~----~~~~~~~~~~~~i~~ 263 (368)
. ..+ -...++|+|+|..+ +. . +|.+++ +..+. ++...+..-..+...
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll--vt-P--ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la 287 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL--VT-P--AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA 287 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEE--Ec-c--cceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence 0 001 12346788888742 22 1 222222 22222 223334444444555
Q ss_pred EEECC------------------CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642 264 FALTQ------------------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (368)
Q Consensus 264 v~~sp------------------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg 325 (368)
+.|+| -+-.+|.++.+. |.|||..+.+++..+..- |-..|++++|++||..|+..+.||
T Consensus 288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred EEeeeeEEEeccccccccccccccceEEEEeecce--EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCC
Confidence 55544 223566666664 999999998888776654 678999999999999999999999
Q ss_pred eEEEEEccCCC
Q 017642 326 TVHVFNLKVNS 336 (368)
Q Consensus 326 ~i~iwd~~~~~ 336 (368)
..-+--++..+
T Consensus 365 yCS~vtfe~~e 375 (434)
T KOG1009|consen 365 FCSLVTFEPWE 375 (434)
T ss_pred ceEEEEEcchh
Confidence 87777666544
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.6e-17 Score=133.40 Aligned_cols=245 Identities=14% Similarity=0.123 Sum_probs=180.9
Q ss_pred cccccCCCCCEEEEEEcCCC-CEEEEEeC----C----eEEEEEecCCCcc-------eEEEcccCCceeEEEEEEeCCe
Q 017642 78 ESTSSSPPPTLLHISFNQDH-GCFAAGTD----H----GFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFRCNI 141 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g-~~l~~~~d----~----~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 141 (368)
......|.+.|+.++-+|-. ++|+++.. . ++.||.+...... ....+...+-..+.++.|.|+.
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 44567788999999999954 56666542 2 2789998543221 1122222233467888999998
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCcE-EEEEe------cCCceeEEEEee--CccEEE--eCCcEEEEEcCCCeEEEEE
Q 017642 142 LALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS------FRSEVRSVKLRR--DRIIVV--LEQKIFVYNFADLKLLHQI 210 (368)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~l~--~d~~i~vwd~~~~~~~~~~ 210 (368)
..+++-.+ +.|.+|++..+.. +..+. +....++-+|+| ++..++ .|+++..||+++.++...+
T Consensus 136 ~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 136 DKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred CeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence 88888764 8999999987755 44442 456778889998 677776 7999999999998877766
Q ss_pred -eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEE
Q 017642 211 -ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIF 286 (368)
Q Consensus 211 -~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iw 286 (368)
..|...+..+.|+|+-+. +|++ ++.||.|+||+... .++..+.+|...|.++.|+|.. ++|++|+.|.. |.+|
T Consensus 210 ~dAHgq~vrdlDfNpnkq~-~lvt-~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Ls 286 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNPNKQH-ILVT-CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLS 286 (370)
T ss_pred hhhhcceeeeccCCCCceE-EEEE-cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEE
Confidence 457778999999999876 3443 67899999998765 5677889999999999999954 58889999999 9999
Q ss_pred ECCCC-----------------------------ceeEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEcc
Q 017642 287 NTLDG-----------------------------TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 287 d~~~~-----------------------------~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~ 333 (368)
....- ..+.++.. |...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 65321 11223444 778999999997555 56777999999876653
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=6.7e-18 Score=142.97 Aligned_cols=206 Identities=18% Similarity=0.289 Sum_probs=164.3
Q ss_pred ccccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPL 155 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~ 155 (368)
.....|++.|.+++|+..-+ .||+|+ |.+|++||+++++.. ..+. .|...|.++.|++ ...++++|+.|
T Consensus 237 ~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~--~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D----- 308 (463)
T KOG0270|consen 237 NSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK--SSIT-HHGKKVQTLEWHPYEPSVLLSGSYD----- 308 (463)
T ss_pred cccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc--eehh-hcCCceeEEEecCCCceEEEecccc-----
Confidence 34568999999999998754 678888 999999999988877 5564 6788889999987 45778899988
Q ss_pred CcEEEEeCCC-CcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQ-SRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
++|.+.|.+. ...-..++..+.|..++|.+.....+ .||+++-+|+|.. +++.+++.|.++|.+++++..-.++
T Consensus 309 ~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred ceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcc
Confidence 9999999984 34445667889999999999654433 5899999999875 8999999999999999999887763
Q ss_pred EEEeecCCCCeEEEEecCcceeeeeeccC---cceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeE
Q 017642 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQ 295 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~ 295 (368)
++ +++.|+.+++|............|. +...|.++.|+-. +|+.|+..+. ++|||+.+...+.
T Consensus 389 -l~-t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 389 -LS-TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPVR 455 (463)
T ss_pred -ee-eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce-EEEeecccChhHH
Confidence 33 4788999999998876555444443 2356777777655 7888888887 9999998876553
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=4.3e-18 Score=150.17 Aligned_cols=100 Identities=17% Similarity=0.371 Sum_probs=86.0
Q ss_pred cCCCCeEEEEecCc--------ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642 235 GLQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (368)
Q Consensus 235 g~~dg~i~i~~~~~--------~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (368)
+..||.|++|.... .....+..|...|+++.|+|-. ..|++++.|.+ |++||+.+++....+.+ |...
T Consensus 646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--Htdq 722 (1012)
T KOG1445|consen 646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQ 722 (1012)
T ss_pred cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCc
Confidence 34678888887653 2345678899999999999943 58999999999 99999999999889988 8899
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
|.+++|||||+.+++.+.||+|+||+-+.+++
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 99999999999999999999999999877643
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.4e-15 Score=138.53 Aligned_cols=249 Identities=20% Similarity=0.344 Sum_probs=190.5
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeE-EEEe-cCCCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNIL-ALVG-GGPDPQYPL 155 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s-~~~d~~~~~ 155 (368)
....|...|.++.|.+.+..++.++ |+.+.+|+....... ...+...+...+..+.. .+++. .+.. ...|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL-IKSLEGLHDSSVSKLALSSPDGNSILLASSSLD----- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee-EEEEeccCCCceeeEEEECCCcceEEeccCCCC-----
Confidence 5668999999999999999999888 888999998766511 12232112123444444 55554 4444 3435
Q ss_pred CcEEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE---e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~---~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
+.+.+||... ......+. |...|..++|++++..++ . |+.+++|++..++.+..+..|...+.++++++++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 212 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL- 212 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce-
Confidence 8999999887 66666666 999999999999998666 3 899999999988888888889999999999988872
Q ss_pred EEEeecCCCCeEEEEecCc-ceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEeeEeccCcccE
Q 017642 230 VLVCPGLQKGQVRVEHYAS-KRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEI 306 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v 306 (368)
+++ +++.|+.+++|+... .... .+..|.... ...|++++.++++++.|+. +++||+..... +..+.. |...+
T Consensus 213 ~~~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v 287 (466)
T COG2319 213 LIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSV 287 (466)
T ss_pred EEE-EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccE
Confidence 333 357899999996653 3344 477777775 4489999988999999999 99999987665 444433 67899
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
.++.|.|++..+++++.|+.+++|++.+......
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 9999999999888888888899998887765443
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=4.1e-16 Score=137.94 Aligned_cols=239 Identities=10% Similarity=0.050 Sum_probs=154.7
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 86 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
+....++++|++++|+++. ++.|.+|+++. +........ ........+.+++++..+++++.. ++.|.+|+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~ 108 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYN----ANCVSVSP 108 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcC----CCeEEEEE
Confidence 4566789999999987775 66799999973 222222222 122234578888887665554421 28999999
Q ss_pred CCC-C---cEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEE-------EEeccCCCeeEEEEecCCC
Q 017642 163 DHQ-S---RCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-------QIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 163 ~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~-------~~~~~~~~v~~~~~~~~~~ 227 (368)
+.+ + +.+..+.+......++++|++++++ .++.|.+||+.+...+. .+.. ......+.|+|+++
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~ 187 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ 187 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence 864 3 2333333445678889999998875 47899999997633221 1111 22345689999999
Q ss_pred eEEEEeecCCCCeEEEEecCc-----ceeeeeecc------CcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeE
Q 017642 228 SLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQ 295 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~------~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~ 295 (368)
.++++. ..++.|.+|+.+. +.+..+..+ ......+.++|+|++|+++.. ++. |.+|++.......
T Consensus 188 ~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~ 264 (330)
T PRK11028 188 YAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVL 264 (330)
T ss_pred EEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeE
Confidence 866653 3478999977652 122222211 112346889999999988865 566 9999986543211
Q ss_pred eeEecc-CcccEEEEEEecCCCEEEEEeC-CCeEEEEEccC
Q 017642 296 EVRRGA-DRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV 334 (368)
Q Consensus 296 ~~~~~~-~~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~~ 334 (368)
++.... -......+.|+|||++|+++.. +++|.+|+++.
T Consensus 265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 222110 1124567899999999998774 88999999863
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.78 E-value=2.6e-17 Score=145.26 Aligned_cols=234 Identities=13% Similarity=0.138 Sum_probs=164.0
Q ss_pred CEEEEEe-CCeEEEEEecCCCcc-eE---EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE-
Q 017642 98 GCFAAGT-DHGFRIYNCDPFREI-FR---RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE- 171 (368)
Q Consensus 98 ~~l~~~~-d~~i~iw~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~- 171 (368)
..|+.+. |++|.++|.....-. .+ +.. ..|...++++.|.+....|++...| .++++||+++.+++..
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGD-----sT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGD-----STIRPWDVKTSRLVGGR 138 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCC-----ceeeeeeeccceeecce
Confidence 3677787 777999997643322 01 122 3788999999999988889988887 9999999999988766
Q ss_pred -Ee-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeE---------------------------EEEEeccCCCee
Q 017642 172 -LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL---------------------------LHQIETIANPKG 218 (368)
Q Consensus 172 -~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~---------------------------~~~~~~~~~~v~ 218 (368)
+. |.+.|.+++|.+....++ .||.|.|||++-... ++.-..+...+.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 43 999999999999876665 599999999964220 011112222333
Q ss_pred E---EEEecCCCeEEEEeecCCCCeEEEEecCcce-------e--eeeecc---CcceEEEEECCCCCEEEEEeCCCcEE
Q 017642 219 L---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------T--KFIMAH---DSRIACFALTQDGQLLATSSTKGTLV 283 (368)
Q Consensus 219 ~---~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-------~--~~~~~~---~~~i~~v~~sp~g~~l~s~~~dg~~i 283 (368)
. +.+..|... ||++|..|+.|+|||..... . ..+..| ...+.++.....|.+|++.+.|+. |
T Consensus 219 ssvTvv~fkDe~t--laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-I 295 (720)
T KOG0321|consen 219 SSVTVVLFKDEST--LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-I 295 (720)
T ss_pred eeeEEEEEeccce--eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-E
Confidence 3 445556554 55556679999999976522 1 112223 345788888888898888888999 9
Q ss_pred EEEECCCCc--eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642 284 RIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 284 ~iwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
++||+.+.. ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+..+.
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 999998643 344444321111222334689999999999999999999998876543
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=136.66 Aligned_cols=225 Identities=14% Similarity=0.223 Sum_probs=160.1
Q ss_pred CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-
Q 017642 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS- 173 (368)
Q Consensus 98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~- 173 (368)
..+|++. .+.|++||..+++.. ..|. .++..+..+.|.. ....+.+++.| |+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--EEFK-GPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--heec-CCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheec
Confidence 4566666 777999998886555 4454 5555555666644 44556666666 999999999876665554
Q ss_pred --cC-CceeEEEEeeCccEEE-------eCCcEEEEEcCCCeE-EEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeE
Q 017642 174 --FR-SEVRSVKLRRDRIIVV-------LEQKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (368)
Q Consensus 174 --~~-~~v~~~~~~~~~~~l~-------~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i 241 (368)
+. .+..+++.+.++.+++ .+-.|.+||++..+. +..+ +.|.+.|+++.|+|....+++ +|+.||.|
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl--SGSvDGLv 190 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL--SGSVDGLV 190 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE--eecccceE
Confidence 33 4667777776666666 477899999988765 4444 679999999999999887544 58999999
Q ss_pred EEEecCcc----eeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEe--------------------
Q 017642 242 RVEHYASK----RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQE-------------------- 296 (368)
Q Consensus 242 ~i~~~~~~----~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~-------------------- 296 (368)
.+++.... .+.....|...|.++.|..++ +.|.+.+..++ ..+|+++.+.....
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 99776653 233344577789999998877 35777777777 89998864421111
Q ss_pred -----------------------------------------eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 297 -----------------------------------------VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 297 -----------------------------------------~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
+. +.|..-|.++.|...+.++.+|++||.+.+|..+.
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 11 11444566777777788999999999999999733
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=4.2e-17 Score=131.06 Aligned_cols=202 Identities=10% Similarity=0.110 Sum_probs=154.2
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEE---cccCCceeEEEEEEeC--CeEEEEecCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD---FERGGGIGVVEMLFRC--NILALVGGGPDPQY 153 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~ 153 (368)
...+.+-+.|.|+.|.|++..|++-.|+.|.+|+++......... ....+.....+-.|+| ++..+++.++
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d---- 192 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD---- 192 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC----
Confidence 334456679999999999999999889999999998765531111 1112344455555665 5666666554
Q ss_pred CCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE----eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEEecCC
Q 017642 154 PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV 226 (368)
Q Consensus 154 ~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 226 (368)
+++..||+++.++...+. |...|..+.|+|+...++ .||.|++||.+. ..+++.+.+|...+.++.|+|.-
T Consensus 193 --~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 193 --STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred --CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 899999999998888887 899999999999987666 589999999975 45788899999999999999998
Q ss_pred CeEEEEeecCCCCeEEEEecC------------------------------cceeeeeeccCcceEEEEECCCCC-EEEE
Q 017642 227 GSLVLVCPGLQKGQVRVEHYA------------------------------SKRTKFIMAHDSRIACFALTQDGQ-LLAT 275 (368)
Q Consensus 227 ~~~~l~~~g~~dg~i~i~~~~------------------------------~~~~~~~~~~~~~i~~v~~sp~g~-~l~s 275 (368)
+.++| +|+.|..|.++... ...+.++..|+..|++++|+.-.. ++|+
T Consensus 271 dqLiL--s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 271 DQLIL--SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ceEEE--ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 87555 46678888775322 122446778999999999997555 7889
Q ss_pred EeCCCcEEEEEECC
Q 017642 276 SSTKGTLVRIFNTL 289 (368)
Q Consensus 276 ~~~dg~~i~iwd~~ 289 (368)
-+.||+ +.|=.+.
T Consensus 349 LSYDGR-viIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGR-VIISSVP 361 (370)
T ss_pred eccCce-EEeecCC
Confidence 999999 7776543
No 165
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.6e-17 Score=138.81 Aligned_cols=197 Identities=22% Similarity=0.271 Sum_probs=151.5
Q ss_pred EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEE
Q 017642 133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ 209 (368)
Q Consensus 133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~ 209 (368)
..++++.++..+++++.| |.+|+|+..+...+.... |...|.++.|+|||++++ .....+||+.++|..+..
T Consensus 148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence 677889999999999998 999999977776666555 999999999999999999 233999999999977666
Q ss_pred Eec--cCCCeeEEEEecCC--CeEEEEeecCCCCeEEE-----EecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCC
Q 017642 210 IET--IANPKGLCAVSQGV--GSLVLVCPGLQKGQVRV-----EHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (368)
Q Consensus 210 ~~~--~~~~v~~~~~~~~~--~~~~l~~~g~~dg~i~i-----~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d 279 (368)
... .......|.|+.|+ ..+++++.-..-+.|+. |.... -...........|++++.+.+|+++|.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 542 22334567787766 34455554444455554 33321 0111122234469999999999999999999
Q ss_pred CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
|. |-|++..+.+.++-++. .|...|+.+.|+||.+++++.+.|.++.|..+.-..
T Consensus 303 Gs-Vai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 303 GS-VAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred Cc-EEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 99 99999999998877664 488999999999999999999999999999887643
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.2e-18 Score=159.61 Aligned_cols=243 Identities=12% Similarity=0.162 Sum_probs=171.5
Q ss_pred EEEEcCCCC-EEEEEe-----------CCeEEEEEecCCCcc----eEEEcccCCceeEEEEEEeCCeEE----EEecCC
Q 017642 90 HISFNQDHG-CFAAGT-----------DHGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILA----LVGGGP 149 (368)
Q Consensus 90 ~~~~s~~g~-~l~~~~-----------d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~ 149 (368)
.++|+|++. +|++|. +..+.||.++..... ....+ ........++|...+.. +++|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeecccc
Confidence 468999987 556553 223556665432222 11222 34556677888765544 788888
Q ss_pred CCCCCCCcEEEEeCCC---C---cEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEe--ccCCC
Q 017642 150 DPQYPLNKVMIWDDHQ---S---RCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIE--TIANP 216 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~---~---~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~--~~~~~ 216 (368)
| |.|.+||... + ..+.++. |.+.|..+.|++... +++ .||.|.|||+.+.+.-.... .....
T Consensus 89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 7 9999999765 2 2344445 999999999999766 666 58999999998755433331 24567
Q ss_pred eeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeeccC--cceEEEEECCCCC-EEEEEeCCCc--EEEEEECCC
Q 017642 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHD--SRIACFALTQDGQ-LLATSSTKGT--LVRIFNTLD 290 (368)
Q Consensus 217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~--~~i~~v~~sp~g~-~l~s~~~dg~--~i~iwd~~~ 290 (368)
|.+++|+..-.+ +|+ +++.+|.+.|||.+.+ .+..+..+. ..+..++|+|+.. .|+++++|.. .|.+||++.
T Consensus 164 I~~lsWNrkvqh-ILA-S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 164 IKCLSWNRKVSH-ILA-SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ceEeccchhhhH-Hhh-ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 888888877665 334 5888999999988775 333444433 3478899999875 5666666542 299999985
Q ss_pred -CceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642 291 -GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (368)
Q Consensus 291 -~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 343 (368)
...++++.. |...|.+|.|++.+ .+|++++.|+.|.+|+.++++...+...
T Consensus 242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 456677766 88899999999866 7899999999999999999876655444
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2e-17 Score=144.05 Aligned_cols=249 Identities=14% Similarity=0.175 Sum_probs=178.2
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC------CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~ 152 (368)
....|.+.|+.++|.+....|++++ |+.+++|+++. ........|. +|...|++++...++..+.+++-|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~D-- 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGID-- 365 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccC--
Confidence 5678999999999999999999999 88899999932 1122334565 999999999999999999999998
Q ss_pred CCCCcEEEEeCCCC----------cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCee
Q 017642 153 YPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKG 218 (368)
Q Consensus 153 ~~~~~i~vwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~ 218 (368)
|+|+.|++... .....+. |.+.|+.++++.....++ .||++++|+...... .++........
T Consensus 366 ---g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 366 ---GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ---ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 99999965421 1223344 999999999999766666 699999999865554 34433222222
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeec-------cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~-------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
-+.+..-........+...-+.-.+++... ..+..+.. ....+..+.++|.+.+.+++.+|+. |+++|..+
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~ 520 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKT 520 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccccc
Confidence 222222222111211111122222222221 12222211 1234778889999999999999999 99999999
Q ss_pred CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
++.+..... |...++++++.|+|-+|++++.|+.+++|.+....-.
T Consensus 521 ~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 521 GKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred cccchheee--ccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 999999888 7889999999999999999999999999999766544
No 168
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=8.3e-18 Score=143.23 Aligned_cols=227 Identities=16% Similarity=0.164 Sum_probs=183.2
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~ 163 (368)
.-.-+.+.++.+|++|+.|+ .+.+..+|+.+....++..+ ...|.++.|--+..+++.+-. ..++|||
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVAQK------~y~yvYD- 197 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVAQK------KYVYVYD- 197 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhhhh------ceEEEec-
Confidence 44567899999999999999 56699999988777655443 345566666555555555554 7899999
Q ss_pred CCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (368)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~ 240 (368)
..|..++.++....|..+.|.|...+++ ..|.++.-|+.+|+.+..+....+.+..++-+|-.. ++..|..+|+
T Consensus 198 ~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---Vih~GhsnGt 274 (545)
T KOG1272|consen 198 NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---VIHLGHSNGT 274 (545)
T ss_pred CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---eEEEcCCCce
Confidence 8899999999888899999999998888 478999999999999999988888888888777764 5556889999
Q ss_pred EEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEE
Q 017642 241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319 (368)
Q Consensus 241 i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 319 (368)
|.+|..+. ..+..+-.|.++|.+|++.++|+|+||.+.|.. |+|||++....+.++.. ..+...++||..|. ||
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkgl-LA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKGL-LA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCccccccccccc-ee
Confidence 99999877 455567899999999999999999999999999 99999999887777764 23678889986553 33
Q ss_pred EEeCCCeEEEEE
Q 017642 320 VSSDKGTVHVFN 331 (368)
Q Consensus 320 s~s~dg~i~iwd 331 (368)
.+....|.||.
T Consensus 350 -~~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 -LSYGDHVQIWK 360 (545)
T ss_pred -eecCCeeeeeh
Confidence 34455699995
No 169
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.4e-15 Score=123.48 Aligned_cols=201 Identities=16% Similarity=0.238 Sum_probs=153.5
Q ss_pred cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe-cCCceeEEEEeeC--ccEEE---eCCc
Q 017642 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQK 195 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~ 195 (368)
.+|...+.++.|+..|..+++++.| ++|+|||.+.. .+....+ |.+.|..+.|.+- |+.++ .|++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 3677889999999999999999998 99999996533 4555666 9999999999763 77777 6999
Q ss_pred EEEEEcCC---------CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------ceeeee-----
Q 017642 196 IFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRTKFI----- 254 (368)
Q Consensus 196 i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~----- 254 (368)
+.||.-.. -....++......|..+.|.|....+.+|+ .+.||.+||+.... .....+
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99998521 123455666778899999999988888887 67899999965432 111122
Q ss_pred --eccCcceEEEEECCC---CCEEEEEeCC-----CcEEEEEECCCC----ceeEeeEeccCcccEEEEEEecCC----C
Q 017642 255 --MAHDSRIACFALTQD---GQLLATSSTK-----GTLVRIFNTLDG----TLLQEVRRGADRAEIYSLAFSSNA----Q 316 (368)
Q Consensus 255 --~~~~~~i~~v~~sp~---g~~l~s~~~d-----g~~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~----~ 316 (368)
..+..+..|+.|++. ..+||.|+.+ +. ++||....+ ..+.++.+ |..+|++|+|.|+- .
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCcee
Confidence 246678899999974 3488888876 35 899976543 34455665 78899999999963 4
Q ss_pred EEEEEeCCCeEEEEEccCCC
Q 017642 317 WLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 317 ~l~s~s~dg~i~iwd~~~~~ 336 (368)
+||+++.|| |+||+++...
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred eEEEeecCc-EEEEEEeecc
Confidence 789999999 9999998643
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.74 E-value=8.4e-17 Score=136.89 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=142.9
Q ss_pred CceeEEEEEEeC--CeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe-cCCceeEEEEeeCc--cEEE--eCCcE
Q 017642 128 GGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRDR--IIVV--LEQKI 196 (368)
Q Consensus 128 ~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-~~~~v~~~~~~~~~--~~l~--~d~~i 196 (368)
+...+.+++|+| +...++.|+.. |+|-+||+.+. .-+..+. |..+|.++.|+|.+ +++. .||+|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKG-----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred cccceEEEEecccCcceEEEEccCC-----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 455666777766 44577777776 99999999532 2233444 89999999999954 3333 79999
Q ss_pred EEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC-
Q 017642 197 FVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ- 271 (368)
Q Consensus 197 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~- 271 (368)
++-|++.......+.. .......+.|+.+...+++ |..=|.+.+|+... .....+.-|...|.+|+++|...
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~---~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF---GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEE---eecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999987643333322 3334556677766665333 34456777766554 33556778888999999999765
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEe--eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+||+++.|++ ++|||++....... +..-.|...|.+..|||++..|++.+.|..|+|||..
T Consensus 337 ~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 337 FLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred heeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 8999999999 99999986443332 3333388899999999998889999999999999984
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=127.69 Aligned_cols=240 Identities=12% Similarity=0.117 Sum_probs=173.6
Q ss_pred ccCCCCCEEEEEEc-------CCCCEEEEEe-CCeEEEEEecCCCcceEEEcc-c-CCceeEEEEEEeCCeEEEEecCCC
Q 017642 81 SSSPPPTLLHISFN-------QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-R-GGGIGVVEMLFRCNILALVGGGPD 150 (368)
Q Consensus 81 ~~~h~~~v~~~~~s-------~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~d 150 (368)
.-.....|+..+|- |+..++|+.+ +.-|++||.-+++........ | ..-....++.|++++..+..|..
T Consensus 100 r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk- 178 (406)
T KOG2919|consen 100 RYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK- 178 (406)
T ss_pred EeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-
Confidence 33445678888885 6677888877 777999998877765432221 1 12335678999999999998876
Q ss_pred CCCCCCcEEEEeC-CCCcEEE---EEec-----CCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642 151 PQYPLNKVMIWDD-HQSRCIG---ELSF-----RSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPK 217 (368)
Q Consensus 151 ~~~~~~~i~vwd~-~~~~~~~---~~~~-----~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v 217 (368)
..|+++|+ +.|.... ++.+ .+-|.+++|+|-.. .++ ...++-||.-..+.++..+.+|.+.|
T Consensus 179 -----rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 179 -----RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV 253 (406)
T ss_pred -----ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence 79999998 4443221 1223 56788999999544 555 46677777777888899999999999
Q ss_pred eEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCc-ceEEEEE--CCCCCEEEEEeCCCcEEEEEECCC-C
Q 017642 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDS-RIACFAL--TQDGQLLATSSTKGTLVRIFNTLD-G 291 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~-~i~~v~~--sp~g~~l~s~~~dg~~i~iwd~~~-~ 291 (368)
+.+.|.++|+.++.. +-.|-.|..|+... ..+..+..|.+ .-..|-| .|+|++|++|+.||. |++||+++ +
T Consensus 254 ThL~~~edGn~lfsG--aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~g 330 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSG--ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLG 330 (406)
T ss_pred eeEEeccCcCeeccc--ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCC
Confidence 999999999975532 33466777788765 45556666655 3334444 688999999999999 99999998 6
Q ss_pred ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 292 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
..+..+.. +...++.++++|--.++++++.. ++|...+
T Consensus 331 n~~sv~~~--~sd~vNgvslnP~mpilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 331 NEVSVTGN--YSDTVNGVSLNPIMPILATSSGQ---RIFKYPK 368 (406)
T ss_pred Cccccccc--ccccccceecCcccceeeeccCc---eeecCCC
Confidence 76666665 67789999999997788877644 3444443
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=7e-16 Score=124.22 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=172.1
Q ss_pred CCEEEEEEcC--C-CCEEEEEe-----CCeEEEEEecCCC--cceEEEcccCCceeEEEEEEeCCeE-----EEEecCCC
Q 017642 86 PTLLHISFNQ--D-HGCFAAGT-----DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNIL-----ALVGGGPD 150 (368)
Q Consensus 86 ~~v~~~~~s~--~-g~~l~~~~-----d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~d 150 (368)
-.++++.|+. + +.+||.|+ .+.|.|..++... ......| .|...+..+.|.|+.. .+++++
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f--d~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF--DHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC--CCCCCccceEecCCccccCcchhhccc--
Confidence 3678889983 3 44788888 2337777665433 3333344 6777888888877653 456655
Q ss_pred CCCCCCcEEEEeCCCCc--EE--EEE------ecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCe---EEEEEecc
Q 017642 151 PQYPLNKVMIWDDHQSR--CI--GEL------SFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK---LLHQIETI 213 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~--~~--~~~------~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~---~~~~~~~~ 213 (368)
..+|+|.+...+ .. ..+ ++..++++..|+. +-+++. .|-+..|||++++. ....+-.|
T Consensus 121 -----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 121 -----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred -----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 579999987422 11 111 2567899999988 444554 59999999998863 34556689
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeee--e--ccCcceEEEEECCCC-CEEEEEeCCCcEEEEEEC
Q 017642 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--M--AHDSRIACFALTQDG-QLLATSSTKGTLVRIFNT 288 (368)
Q Consensus 214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~--~--~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~ 288 (368)
..+|..++|...+..++ |+ -+.||.+|+++.......++ + ....+...++|++.. +++|+-..|...|.|.|+
T Consensus 196 DKEV~DIaf~~~s~~~F-AS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVF-AS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred CcceeEEEeccCccceE-EE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 99999999999776644 44 34799999966654332222 1 224578889998744 589988888766999999
Q ss_pred CC-CceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCC
Q 017642 289 LD-GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 289 ~~-~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
+. +..+.++++ |.+.|+.++|.|.. ..|+++++|..+.|||+...-.
T Consensus 274 R~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 274 RVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 86 567778888 89999999999965 5899999999999999987554
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=5e-16 Score=125.08 Aligned_cols=237 Identities=10% Similarity=0.129 Sum_probs=162.7
Q ss_pred cCCCCCEEEEEEcCCCC-----EEEEEeCCeEEEEEecCCCcceE--EEcc----cCCceeEEEEEEeC-CeEEEEecCC
Q 017642 82 SSPPPTLLHISFNQDHG-----CFAAGTDHGFRIYNCDPFREIFR--RDFE----RGGGIGVVEMLFRC-NILALVGGGP 149 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~-----~l~~~~d~~i~iw~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~-~~~~~~s~~~ 149 (368)
..|.-+++.+.|.|+.. +||+. +..+|+|.+...+.... ..+. ......++++.|+. +-.++.+++-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 57888999999999863 45544 45799999875332211 1111 13445677777764 3344555555
Q ss_pred CCCCCCCcEEEEeCCCCcE----EEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEec---cCCCee
Q 017642 150 DPQYPLNKVMIWDDHQSRC----IGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIET---IANPKG 218 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~---~~~~v~ 218 (368)
| -+..|||++++.. .+.+.|...|..++|...+.-++ .||.+++||++..+--..+-. ...+..
T Consensus 172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 5 8999999998732 23344999999999999776555 699999999988765444322 234566
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEEEe--cCcceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCc---
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRVEH--YASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGT--- 292 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~--- 292 (368)
.++|++...+ ++|+-+.....|.|-+ .....+..+.+|.+.|+.|+|.|... .|++++.|.. +.|||+.+.-
T Consensus 247 RLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~ 324 (364)
T KOG0290|consen 247 RLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPREN 324 (364)
T ss_pred eeccCcCCch-HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccC
Confidence 6778776654 4444344455666633 33467888999999999999999765 8999999998 9999997532
Q ss_pred ---eeEeeEeccCcccEEEEEEec-CCCEEEEEeCCCeEEEE
Q 017642 293 ---LLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 293 ---~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~iw 330 (368)
++..+. ..+.|+.+.|++ .+.+++.+. ++++.|.
T Consensus 325 ~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 325 GEDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred CCCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 232333 246899999996 456776664 4455554
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=138.04 Aligned_cols=224 Identities=11% Similarity=0.116 Sum_probs=170.6
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEE-ecCCCcce----------------------------------------
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYN-CDPFREIF---------------------------------------- 120 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~-~~~~~~~~---------------------------------------- 120 (368)
..|...|.|+.|+.+...+.+++|+.+.+|. +.+.....
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 3567778889999888888888887766654 32111100
Q ss_pred ------EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--
Q 017642 121 ------RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-- 191 (368)
Q Consensus 121 ------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-- 191 (368)
++.+ ..|...+.+-.|++++..+++.+.| |.|++|. ++|-...++. ....|+|++|.|+...++
T Consensus 91 ~k~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 91 NKSARVERSI-SAHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred cccchhhhhh-hhhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 0001 2455566677889999999999998 9999999 6665444443 788999999999876665
Q ss_pred eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCC
Q 017642 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271 (368)
Q Consensus 192 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~ 271 (368)
..+.+.|=.+.....+-..+.|.+-|-++.|++..+ +++ +|++|-..++|+..+..+..-..|+.+|++++|.|+ +
T Consensus 164 ~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~-sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~ 239 (737)
T KOG1524|consen 164 QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIA-SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-K 239 (737)
T ss_pred cCCeEEEeecccccceeEEeccCcEEEEeecCcccc--cee-ecCCceeEEeecccCcccccCChhccceeeeeeccc-c
Confidence 677888888876666667789999999999999887 344 588999999999999999988999999999999999 6
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
.++.++.+ + +| +... ..+.|..++||+||..++.|+..|.+.+=.
T Consensus 240 ~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 240 DYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEee
Confidence 66666654 2 44 2221 467899999999999999999888766543
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=8.1e-16 Score=135.10 Aligned_cols=200 Identities=18% Similarity=0.225 Sum_probs=156.7
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEE----
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFV---- 198 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~v---- 198 (368)
+|...+.++..++.+..+++|+.| |+|+||.+.+|.|++++...+.|.+++|+|.+...+ .+..+.|
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 899999999999999999999998 999999999999999999999999999999754322 2333333
Q ss_pred -----------------------------EEcCC---Ce-EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe
Q 017642 199 -----------------------------YNFAD---LK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (368)
Q Consensus 199 -----------------------------wd~~~---~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~ 245 (368)
|.-.. ++ -++..-.|...|..+.|+..|+++..++..+....|.|..
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 33211 00 0122234667888999999999877776444556677755
Q ss_pred cCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC
Q 017642 246 YASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (368)
Q Consensus 246 ~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 324 (368)
...+. ...+....+-|.++.|+|...+|++++... |+|||+..++.++.+.. ....|..++.+|.|..|+.++.|
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeEEEecCC
Confidence 44433 334556677899999999999999888764 99999999888887776 45689999999999999999999
Q ss_pred CeEEEEEccCC
Q 017642 325 GTVHVFNLKVN 335 (368)
Q Consensus 325 g~i~iwd~~~~ 335 (368)
+.+..||+.-.
T Consensus 629 ~k~~WfDldls 639 (733)
T KOG0650|consen 629 KKMCWFDLDLS 639 (733)
T ss_pred CeeEEEEcccC
Confidence 99999999765
No 176
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=130.26 Aligned_cols=198 Identities=15% Similarity=0.235 Sum_probs=152.4
Q ss_pred cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC--CCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEE
Q 017642 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFV 198 (368)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~v 198 (368)
+.....+.++.|+|...++.+++.| +.++||.+. ....++.+. ...+|.+.+|.|+|. .++ ....++.
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d-----~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLD-----GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCC-----CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 3455678999999999999999998 999999865 345566666 778999999999998 555 3457999
Q ss_pred EEcCCCeEEEE--EeccC-CCeeEEEEecCCCeEEEEeecCCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEE
Q 017642 199 YNFADLKLLHQ--IETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLA 274 (368)
Q Consensus 199 wd~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~ 274 (368)
||+.+.+..+. ..++. ..+....++++++. ++. .+..|.|.+-.. ++..+..+ .-.+.|..++|+.||+.|+
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f--ia~-~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF--IAI-AGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCe--EEE-cccCceEEeehhhhhhhhhee-eeccEEeeEEEecCCcEEE
Confidence 99988765432 22222 23556788999985 443 347899998444 33444333 3467799999999999999
Q ss_pred EEeCCCcEEEEEECCCCceeEeeEeccCcccE--EEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI--YSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
.++.+|. |.+||++...+++.+.. .+.| ++++.+++|.+||+|+..|.|-|||.++--
T Consensus 361 ~~~~~Ge-V~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 361 ASGGTGE-VYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EEcCCce-EEEEecCCcceEEEEee---cCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 9999998 99999999999998885 3334 567778999999999999999999976543
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=2.1e-15 Score=126.28 Aligned_cols=210 Identities=13% Similarity=0.128 Sum_probs=152.8
Q ss_pred CCCCCCcccccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcc-----eEEEcccCCceeEEEEEEeCC-eEE
Q 017642 72 PLPSPAESTSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREI-----FRRDFERGGGIGVVEMLFRCN-ILA 143 (368)
Q Consensus 72 ~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~ 143 (368)
......+....+|+.+|..++|+|-. ..||+|+ |..|.||.+-..... ....+. +|...|--+.|+|. ..+
T Consensus 68 Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NV 146 (472)
T KOG0303|consen 68 GRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNV 146 (472)
T ss_pred cccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhh
Confidence 33445667788999999999999954 5678888 677999998643321 123444 77777777777763 334
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe-eE
Q 017642 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-GL 219 (368)
Q Consensus 144 ~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v-~~ 219 (368)
+++++.| ++|.+||+.+|+.+.++.|.+.|+++.|+.||.+++ .|..|+|||.++++.+..-..|.+.- ..
T Consensus 147 Llsag~D-----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 147 LLSAGSD-----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred HhhccCC-----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 5555655 999999999999999999999999999999999998 59999999999999988876666543 33
Q ss_pred EEEecCCCeEEEEeec---CCCCeEEEEecCc--ce--eeeeeccCcceEEEEECCCCCEEE-EEeCCCcEEEEEECCCC
Q 017642 220 CAVSQGVGSLVLVCPG---LQKGQVRVEHYAS--KR--TKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDG 291 (368)
Q Consensus 220 ~~~~~~~~~~~l~~~g---~~dg~i~i~~~~~--~~--~~~~~~~~~~i~~v~~sp~g~~l~-s~~~dg~~i~iwd~~~~ 291 (368)
+.|-.++. ++++| ..+.++.+|+... .. ...+. ....|.---|.+|.++++ +|-.|+. ||.|++...
T Consensus 222 aifl~~g~---i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d 296 (472)
T KOG0303|consen 222 AIFLASGK---IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNE 296 (472)
T ss_pred eEEeccCc---eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCC
Confidence 55666776 33334 3577888887654 11 22222 234566666888888655 4556888 999998765
Q ss_pred c
Q 017642 292 T 292 (368)
Q Consensus 292 ~ 292 (368)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 4
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.4e-15 Score=125.88 Aligned_cols=243 Identities=14% Similarity=0.132 Sum_probs=173.2
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc----ceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 154 (368)
-...|.+-|+++.|+.++++|++|+ |..+++|+++..-. .......+.|...+.++.|+.....+.+|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~---- 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW---- 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc----
Confidence 3568999999999999999999999 66699999863211 11122335778999999999999999999998
Q ss_pred CCcEEEEeCCCCcEEEEEecC---CceeEEEEeeCccEEE---eCCcEEEEEcCCCe-EEEEE--eccCCCeeEEEEecC
Q 017642 155 LNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-LLHQI--ETIANPKGLCAVSQG 225 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~-~~~~~--~~~~~~v~~~~~~~~ 225 (368)
++|.+-|+++.+.+..+.|. +.|+.+..+|-...++ .++.|.+||++..+ .+..+ .........+.|+|.
T Consensus 127 -~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 127 -GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred -ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999999999888754 4999999999655555 58999999997654 22211 222334556778887
Q ss_pred CCeEEEEeecCCCCeEEEEecCc------------------------------ce-------------------eeeee-
Q 017642 226 VGSLVLVCPGLQKGQVRVEHYAS------------------------------KR-------------------TKFIM- 255 (368)
Q Consensus 226 ~~~~~l~~~g~~dg~i~i~~~~~------------------------------~~-------------------~~~~~- 255 (368)
...++++ .+..+-+-+|+... .. ...++
T Consensus 206 ~P~Li~~--~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 206 TPALILV--NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CceeEEe--ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 7664443 33445555555431 00 00111
Q ss_pred ccC-------cceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-----------------------ceeEeeEeccCccc
Q 017642 256 AHD-------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-----------------------TLLQEVRRGADRAE 305 (368)
Q Consensus 256 ~~~-------~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~ 305 (368)
.|. ..+.+++|..|. .+++|+.+-. |++|.+... +.+..+++ |..-
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~-i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG--HRSv 359 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWG-IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG--HRSV 359 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccc-eEEEecCCCccccCccccCcchhhCchhheecceeEEEec--cccc
Confidence 111 124556665444 4889999988 999987421 12334666 7888
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+..+.|+|...+|++.+-.+.++||.-.
T Consensus 360 ~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 360 PNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccceeecCCcceEeccchhhheeccccc
Confidence 9999999999999999999999999653
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.4e-15 Score=138.63 Aligned_cols=251 Identities=15% Similarity=0.133 Sum_probs=177.5
Q ss_pred CcccccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceE---EEcccCCceeEEEEEEeCCeEE--EEecCC
Q 017642 77 AESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFR---RDFERGGGIGVVEMLFRCNILA--LVGGGP 149 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~s~~~ 149 (368)
.+...-.-...|+|+.|+|... +|+.|. +|.|.+||+........ ....+.|...++.+.|..+-.- +++++.
T Consensus 234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 3444445677999999999655 555555 77799999987655211 1222578888888888654333 666666
Q ss_pred CCCCCCCcEEEEeCCCCcE-EEE------------EecCCceeEEEEeeC--ccEEE--eCCcEEEEEcCC---Ce----
Q 017642 150 DPQYPLNKVMIWDDHQSRC-IGE------------LSFRSEVRSVKLRRD--RIIVV--LEQKIFVYNFAD---LK---- 205 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~-~~~------------~~~~~~v~~~~~~~~--~~~l~--~d~~i~vwd~~~---~~---- 205 (368)
| |.|..|+++.-.. ... ......+++++|.+. ..+++ .+|.|+.-+-.. ..
T Consensus 314 D-----G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 314 D-----GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred C-----CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc
Confidence 7 9999998764322 111 112346788888874 34444 578777644322 21
Q ss_pred -EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cceeeeeeccCcceEEEEECCCCC-EEEEEeCCCc
Q 017642 206 -LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGT 281 (368)
Q Consensus 206 -~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~ 281 (368)
....+..|.++|.++.++|-+..+++++ | |.+++||... ..++..+..+...+++++|||... .++++..||.
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred cccccccccCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 2334556888999999999998877765 4 9999999876 355566777788899999999765 7888899999
Q ss_pred EEEEEECCCC--ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 282 LVRIFNTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 282 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
|.|||+... +++...+. +......+.|+++|+.|++|...|++++|++...-..
T Consensus 466 -l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~ 521 (555)
T KOG1587|consen 466 -LDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAV 521 (555)
T ss_pred -eehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCchhhc
Confidence 999999754 34444443 3456778889999999999999999999999755443
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=9.8e-17 Score=145.74 Aligned_cols=243 Identities=12% Similarity=0.186 Sum_probs=179.5
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
..+|.++|+|+.|...|.++++|+ |.-++||..++..+. ..+. +|...+..++.+.+...+++++.| ..|+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS~D-----~vIr 257 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAASND-----KVIR 257 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcccC-----ceEE
Confidence 468999999999999999999999 555999998876665 5565 999999999999999999999988 9999
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcC-CC-------------eEEEEEecc----------
Q 017642 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFA-DL-------------KLLHQIETI---------- 213 (368)
Q Consensus 160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~-~~-------------~~~~~~~~~---------- 213 (368)
+|.+.++.++..+. |.+.|++++|+|-. .. .||++++||.+ .. ..+..+...
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 99999999999888 99999999999954 11 68999999986 10 000000000
Q ss_pred ------CCCeeEEEEecCCCeEEEEeecC-----------CCCeEEEEecC-cceeeeeeccCcceEEEEECCCCC-EEE
Q 017642 214 ------ANPKGLCAVSQGVGSLVLVCPGL-----------QKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQ-LLA 274 (368)
Q Consensus 214 ------~~~v~~~~~~~~~~~~~l~~~g~-----------~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~-~l~ 274 (368)
......+++... .+.++. ++ .+-.+.+|+.. +.....+.+|...+..+.++|-.. +..
T Consensus 336 ~d~ea~n~e~~~l~~~~~--~lif~t-~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSN--LLIFVT-RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred CCcccccchhhHhhhhcc--ceEEEe-ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 000011111111 111111 21 22333445433 445566778999999999999655 566
Q ss_pred EEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
+++.||. ..|||+-.|.+++.+..+ .+.+..-.||+||..++....-|.++|.....++..+
T Consensus 413 sag~dgs-t~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 413 SAGYDGS-TIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred hccCCCc-eEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 8999999 999999999988877754 3567888999999999888888999998876666554
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=5.9e-15 Score=123.61 Aligned_cols=201 Identities=13% Similarity=0.166 Sum_probs=151.6
Q ss_pred cCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCC-------cEEEEEe-cCCceeEEEEeeCccEEE----e
Q 017642 126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVV----L 192 (368)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~----~ 192 (368)
.+|...++++.|+| +...+++|+.| .+|.||.+..+ +++..+. |...|-.++|+|.-..++ .
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD-----~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSED-----TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred cCccccccccccCccCCceeecCCCC-----ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 38999999999998 56778899988 99999998654 4566666 999999999999654443 6
Q ss_pred CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCc-ceEEEEECCCC
Q 017642 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDS-RIACFALTQDG 270 (368)
Q Consensus 193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~-~i~~v~~sp~g 270 (368)
|.+|.+||+.+|+.+.++. |.+.|.++.|+.||.. ++ +.+.|..|+||+... ..+..-.+|.+ .-..+.|-.+|
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~--l~-TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL--LC-TTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCce--ee-eecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 8999999999999988887 9999999999999985 33 356999999977655 45555557765 24456677788
Q ss_pred CEEEEEeC---CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCC
Q 017642 271 QLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS 336 (368)
Q Consensus 271 ~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~ 336 (368)
.++-+|-. +.. +-+||..+.+.-..+..-.....|.---|.+|.++++.++ .|+.||.|.+....
T Consensus 229 ~i~tTGfsr~seRq-~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQ-IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeeeccccccccc-eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 85555532 556 9999977654322332221345676667888888776555 79999999998765
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=3.2e-15 Score=133.04 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=122.0
Q ss_pred CCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC------------
Q 017642 74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN------------ 140 (368)
Q Consensus 74 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (368)
.....+...+|.+.|+|++|+.||+.+|+|+ |+.|.+|+-.- +..+ .+ .|...+.+|.|+|-
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~L--kY--SH~D~IQCMsFNP~~h~LasCsLsdF 116 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGIL--KY--SHNDAIQCMSFNPITHQLASCSLSDF 116 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-ccee--ee--ccCCeeeEeecCchHHHhhhcchhhc
Confidence 3445566789999999999999999999999 88899998432 2221 12 34444455555554
Q ss_pred ---------------------------eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe----cCCceeEEEEeeCcc-
Q 017642 141 ---------------------------ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRI- 188 (368)
Q Consensus 141 ---------------------------~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~- 188 (368)
+.+++-|-.+ |+|.+-+ .+++....+. ..++|++++|+|...
T Consensus 117 glWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~n-----GTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 117 GLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFN-----GTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred cccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccC-----ceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 4444444433 4444443 3333333332 233455555555431
Q ss_pred ----EEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcce
Q 017642 189 ----IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (368)
Q Consensus 189 ----~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i 261 (368)
.++ .+.++..|.+ +|+.+..-+.-.-.-.|+.+.++|+++++ |+.|+.+.++.+.+-.+-++......|
T Consensus 191 G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~Li---GGsdk~L~~fTR~GvrLGTvg~~D~WI 266 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILL---GGSDKQLSLFTRDGVRLGTVGEQDSWI 266 (1081)
T ss_pred CccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEE---ccCCCceEEEeecCeEEeeccccceeE
Confidence 111 2333333333 22222211111112234556666665332 567889999888887777777788899
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642 262 ACFALTQDGQLLATSSTKGTLVRIFNT 288 (368)
Q Consensus 262 ~~v~~sp~g~~l~s~~~dg~~i~iwd~ 288 (368)
..++..|++++++.|+.||+ |-.|++
T Consensus 267 WtV~~~PNsQ~v~~GCqDGT-iACyNl 292 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGT-IACYNL 292 (1081)
T ss_pred EEEEEccCCceEEEEEccCe-eehhhh
Confidence 99999999999999999999 888776
No 183
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=3.7e-15 Score=120.15 Aligned_cols=146 Identities=10% Similarity=0.190 Sum_probs=108.0
Q ss_pred EEEEeeCccEEE--e-----------CCcEEEEEcC-CCeEEEEEec-cCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642 180 SVKLRRDRIIVV--L-----------EQKIFVYNFA-DLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (368)
Q Consensus 180 ~~~~~~~~~~l~--~-----------d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~ 244 (368)
.+.|+++|.+++ . -+...+|.++ .......+.. ..++|..++|+|+|+.++++. |..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEEE
Confidence 456667666655 1 1234444442 2233444433 345799999999999877665 7778899999
Q ss_pred ecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642 245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 321 (368)
+.+...+..+. ...+..|.|+|+|++|++++. .|. |.+||+++.+.+..+. |. .+..++|+|||++|+++
T Consensus 89 d~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~~-~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---HS-DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---cC-cEEEEEEcCCCCEEEEE
Confidence 98877776664 457789999999999998864 467 9999999888887765 32 47899999999999988
Q ss_pred eC------CCeEEEEEcc
Q 017642 322 SD------KGTVHVFNLK 333 (368)
Q Consensus 322 s~------dg~i~iwd~~ 333 (368)
.. |+.++||++.
T Consensus 162 ~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeccceeccccEEEEEec
Confidence 63 7889999995
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=3.8e-15 Score=129.37 Aligned_cols=240 Identities=11% Similarity=0.152 Sum_probs=157.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc----eEEEcccCCceeEEEEEE---eCCeE-EEEecCCCCCCCCCcE
Q 017642 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI----FRRDFERGGGIGVVEMLF---RCNIL-ALVGGGPDPQYPLNKV 158 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~-~~~s~~~d~~~~~~~i 158 (368)
.+....++-.|++|+..-.+.+.+|+....... ..+.+. ...-...++.. .+++. .+++-+. |.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~t------Gqv 197 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTT------GQV 197 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeecc------Cce
Confidence 344555556677887766667888887642221 112221 22211222211 12232 2233222 889
Q ss_pred EEEeCCCCcEEEEEe-----cCCceeEEEEeeC--ccEEE--eCCcEEEEEcCC--------------CeE---------
Q 017642 159 MIWDDHQSRCIGELS-----FRSEVRSVKLRRD--RIIVV--LEQKIFVYNFAD--------------LKL--------- 206 (368)
Q Consensus 159 ~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~--~~~l~--~d~~i~vwd~~~--------------~~~--------- 206 (368)
.+.|....+..+.+. .+..|+++.|-|. +.+++ .+|.+++||.+- +..
T Consensus 198 q~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk 277 (636)
T KOG2394|consen 198 QLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK 277 (636)
T ss_pred EEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc
Confidence 888866533222221 4578999999984 45555 699999997632 111
Q ss_pred -----EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCC
Q 017642 207 -----LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (368)
Q Consensus 207 -----~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg 280 (368)
+..+....+.+...+|++||++ ||+ -++||.+||++..... +..++..-+...|++|+|||+||++|++|.
T Consensus 278 ~~rNPv~~w~~~~g~in~f~FS~DG~~--LA~-VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 278 KTRNPVARWHIGEGSINEFAFSPDGKY--LAT-VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ccCCccceeEeccccccceeEcCCCce--EEE-EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 1111122345677899999996 444 3589999997776644 445566778899999999999999999999
Q ss_pred cEEEEEECCCCceeEeeEeccCcccEEEEEEec-------------------------------C----C----------
Q 017642 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-------------------------------N----A---------- 315 (368)
Q Consensus 281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp-------------------------------~----~---------- 315 (368)
- |.||.+..++.+..-.+ |+..|..|+|.| + +
T Consensus 355 L-VtVwSf~erRVVARGqG--HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~ 431 (636)
T KOG2394|consen 355 L-VTVWSFEERRVVARGQG--HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRIN 431 (636)
T ss_pred e-EEEEEeccceEEEeccc--cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccccc
Confidence 9 99999999998877776 899999999982 0 1
Q ss_pred ---CEEEEEeCCCeEEEEEccCCCCCC
Q 017642 316 ---QWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 316 ---~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
-.+.+.+.|..+.+||+....-.+
T Consensus 432 ~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 432 SVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ceEEEeecccccceEEEEecchhhccc
Confidence 146677899999999998765444
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.3e-14 Score=133.08 Aligned_cols=237 Identities=14% Similarity=0.150 Sum_probs=171.9
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe---EEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642 91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI---LALVGGGPDPQYPLNKVMIWDDHQSR 167 (368)
Q Consensus 91 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~d~~~~~~~i~vwd~~~~~ 167 (368)
-.|++|+++++....+.|.||...++.+. ..+. .+...+..+...+.. .++.++..+ |.|++||...++
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEecC-----ccEEEecCCCcE
Confidence 46899999999999999999999887776 3454 777777777665432 455566666 999999999888
Q ss_pred EEEEEecCCceeEEEE-----------------------------------------------------------eeCcc
Q 017642 168 CIGELSFRSEVRSVKL-----------------------------------------------------------RRDRI 188 (368)
Q Consensus 168 ~~~~~~~~~~v~~~~~-----------------------------------------------------------~~~~~ 188 (368)
.++++....++..+.+ ++.|.
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 7776643222222222 22222
Q ss_pred EEE--eCCcEEEEEcCCCeEEEE---E-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-----ceeeeeecc
Q 017642 189 IVV--LEQKIFVYNFADLKLLHQ---I-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAH 257 (368)
Q Consensus 189 ~l~--~d~~i~vwd~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~ 257 (368)
+.. .+..+++|+...+..... . ..|...+++.+++|.++. +|+ |..||+|.+|..-+ .....+.-|
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa-~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAA-GDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEE-eccCCcEEEEeccccccccccceEEEec
Confidence 221 355677777765431110 0 124455788999999984 554 77899999986544 334456778
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
...|.+++|+++|.+|++|+..|. +-+|.+.+++ .+-+++ -.++|..+.+|||+.+.+....|+.|.+....+-..
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 899999999999999999999999 9999999988 334444 567999999999999999999999999998866544
Q ss_pred CCCCC
Q 017642 338 SARSE 342 (368)
Q Consensus 338 ~~~~~ 342 (368)
....+
T Consensus 327 k~tIs 331 (792)
T KOG1963|consen 327 KSTIS 331 (792)
T ss_pred hhhcc
Confidence 43333
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=1.1e-13 Score=126.10 Aligned_cols=238 Identities=23% Similarity=0.407 Sum_probs=181.3
Q ss_pred CCEEEEEE-cCCCC-EEEEE-e-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCC-CCCCCCCcEE
Q 017642 86 PTLLHISF-NQDHG-CFAAG-T-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVM 159 (368)
Q Consensus 86 ~~v~~~~~-s~~g~-~l~~~-~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~~i~ 159 (368)
..+..+.+ ++++. +++.. . ++.+.+|+... .... ..+. .|...+..+.+.+++..++.++. + +.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~ 181 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI--RTLE-GHSESVTSLAFSPDGKLLASGSSLD-----GTIK 181 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE--EEEe-cCcccEEEEEECCCCCEEEecCCCC-----CceE
Confidence 46777777 88887 44443 3 67799999876 3332 3333 67777889999999877777664 6 9999
Q ss_pred EEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEE-EEeccCCCeeEEEEecCCCeEEEEe
Q 017642 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
+|++..+..+..+. |...|.+++|+|++. +++ .|+.|++||...+..+. .+..|.... ...|++++.. ++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~- 257 (466)
T COG2319 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL--LA- 257 (466)
T ss_pred EEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCE--EE-
Confidence 99999988888888 899999999999987 444 58999999998888877 577777665 4489999843 33
Q ss_pred ecCCCCeEEEEecCcce--eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642 234 PGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 311 (368)
+++.|+.+++|+..... ...+..|...+.++.|+|++..+++++.|+. +++||..............|...+..+.|
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 36789999998776433 3444678899999999998888888999988 99999988877666651125667999999
Q ss_pred ecCCCEEEEE-eCCCeEEEEEccCCC
Q 017642 312 SSNAQWLAVS-SDKGTVHVFNLKVNS 336 (368)
Q Consensus 312 sp~~~~l~s~-s~dg~i~iwd~~~~~ 336 (368)
.+++..++.+ ..|+.+++|++....
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 4333556555 678899999998876
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.7e-13 Score=113.00 Aligned_cols=230 Identities=14% Similarity=0.184 Sum_probs=165.5
Q ss_pred CEEEEEEcCCCCEEEEEe-CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642 87 TLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~ 163 (368)
.|.-+-|+.+ ++|..+ +.. +++++......++...+ ...++++..+.+.++++-- ..|+|||+
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f----pt~IL~VrmNr~RLvV~Le--------e~IyIydI 113 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFF----PTSILAVRMNRKRLVVCLE--------ESIYIYDI 113 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEec----CCceEEEEEccceEEEEEc--------ccEEEEec
Confidence 4555566544 666666 444 89999887777766555 3567788887777666553 56999999
Q ss_pred CCCcEEEEEe----cCCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642 164 HQSRCIGELS----FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 164 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
++.+.+.++. +...+.++.++..+.+++ ..|.|.|||+.+.+.+..+..|.+.+.+++|+++|.. +|+
T Consensus 114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~l--lAT- 190 (391)
T KOG2110|consen 114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTL--LAT- 190 (391)
T ss_pred ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCE--EEE-
Confidence 9999998886 344566777777778888 4689999999999999999999999999999999984 554
Q ss_pred cCCCCe-EEEE-ecCcceeeeeecc--CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc------------------
Q 017642 235 GLQKGQ-VRVE-HYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT------------------ 292 (368)
Q Consensus 235 g~~dg~-i~i~-~~~~~~~~~~~~~--~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~------------------ 292 (368)
++..|+ |||+ ..+++.+..++.. -..|.+++|++++.+|++.+..++ |+||.+....
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~s 269 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVS 269 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhh
Confidence 666776 5664 4555666666532 345889999999999999999999 9999885311
Q ss_pred ---------e----------eEeeEeccCcccEEEEEEe--cCCCEEEEEeCCCeEEEEEccCC
Q 017642 293 ---------L----------LQEVRRGADRAEIYSLAFS--SNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 293 ---------~----------~~~~~~~~~~~~v~~l~~s--p~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
. ....+.. ..+.-..+.+. +....+..++.||.++.|.+.-.
T Consensus 270 k~~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 270 KAATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 0 0000000 01111223333 46678889999999999998754
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=9.9e-14 Score=109.30 Aligned_cols=226 Identities=13% Similarity=0.182 Sum_probs=159.2
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC--------cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR--------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
.|.+-+|+|.+++|++|. ++.|.+..++... ......+ ..|...+..+.|..+. +.++++ |.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d~~--Lls~gd------G~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHDDF--LLSGGD------GL 82 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeehhh--eeeccC------ce
Confidence 455668999999999999 8889999885321 1111222 3888999999998443 344443 89
Q ss_pred EEEEeCCCCcE------EEEEe--------cCCceeEEEEeeCcc-EEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEE
Q 017642 158 VMIWDDHQSRC------IGELS--------FRSEVRSVKLRRDRI-IVV--LEQKIFVYNFADLKLLHQIETIANPKGLC 220 (368)
Q Consensus 158 i~vwd~~~~~~------~~~~~--------~~~~v~~~~~~~~~~-~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 220 (368)
|+-|..+.... +.+.+ .--.|++|-..|... ++. .|+.++.||+++|+..+++++|.+-+.++
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 99887654322 11111 123688888887543 333 79999999999999999999999999888
Q ss_pred EEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeec---------cC-cceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642 221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA---------HD-SRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (368)
Q Consensus 221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~---------~~-~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (368)
........ +. +|++||++|+|+... +.+..+.. |. ..|.+++. +..+|++|+.-. +.+|.++
T Consensus 163 v~R~~~~q--il-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~--lslwhLr 235 (325)
T KOG0649|consen 163 VGRNANGQ--IL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK--LSLWHLR 235 (325)
T ss_pred eecccCcc--ee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc--eeEEecc
Confidence 77333332 33 589999999988765 44444432 22 24666665 455888877554 8999999
Q ss_pred CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
..++...|.- .+.+..+.|-. ..+++++..+.|.-|.+.
T Consensus 236 sse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 236 SSESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec
Confidence 9999988875 56789999965 367777777788888774
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.4e-15 Score=134.99 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=141.9
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEec-CCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DH---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYP 154 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~ 154 (368)
....|...+.+.+|+|||+.|+..+ ++ .|++||+.+++......+. ++ .....|++++..++.+ ..+
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~---~~~~~wSPDG~~La~~~~~~---- 269 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GH---NGAPAFSPDGSRLAFASSKD---- 269 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-Cc---cCceeECCCCCEEEEEEecC----
Confidence 3456777899999999999998876 32 3999999876544333332 22 2357888887655543 334
Q ss_pred CCc--EEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEEecCCC
Q 017642 155 LNK--VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 155 ~~~--i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 227 (368)
|. |++||+.+++......+...+....|+|||+.++ .++...||++.. +.....+ .+.. ....|+|+|+
T Consensus 270 -g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~ 345 (429)
T PRK01742 270 -GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGK 345 (429)
T ss_pred -CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCC
Confidence 55 5556776666544333667788999999998766 357778887643 2222333 2332 4578999999
Q ss_pred eEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC--CCCceeEeeEeccCccc
Q 017642 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT--LDGTLLQEVRRGADRAE 305 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~--~~~~~~~~~~~~~~~~~ 305 (368)
.++++ + .++.+. |+........+..+ .....+.|+|||++|+.++.++. +.+|++ .+|+.++.+.. |.+.
T Consensus 346 ~ia~~--~-~~~i~~-~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~ 417 (429)
T PRK01742 346 TLVMI--N-GDNVVK-QDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQ 417 (429)
T ss_pred EEEEE--c-CCCEEE-EECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCC
Confidence 75443 2 355444 55444333333222 13456889999999999999998 888876 36777878875 6677
Q ss_pred EEEEEEecC
Q 017642 306 IYSLAFSSN 314 (368)
Q Consensus 306 v~~l~~sp~ 314 (368)
+...+|+|-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 889999984
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.7e-13 Score=121.26 Aligned_cols=222 Identities=10% Similarity=0.086 Sum_probs=143.5
Q ss_pred eCCeEEEEEecCC-CcceEEEcccCCceeEEEEEEeCCeEEEEe-cCCCCCCCCCcEEEEeCC-CCcE--EEEEecCCce
Q 017642 104 TDHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVG-GGPDPQYPLNKVMIWDDH-QSRC--IGELSFRSEV 178 (368)
Q Consensus 104 ~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~d~~~~~~~i~vwd~~-~~~~--~~~~~~~~~v 178 (368)
.+++|++|++.+. +......+. .......+.+++++..++. +..+ +.|.+|++. +++. +......+..
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCCc
Confidence 3888999999643 323334442 2234556677777665533 3334 889999986 3432 2333345567
Q ss_pred eEEEEeeCccEEE----eCCcEEEEEcCC-Ce---EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-c
Q 017642 179 RSVKLRRDRIIVV----LEQKIFVYNFAD-LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K 249 (368)
Q Consensus 179 ~~~~~~~~~~~l~----~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~ 249 (368)
..++++|++++++ .++.|.+|++.+ +. .+..+.. ......++++|+++.++++ ...++.|.+|+.+. .
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~--~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVP--CLKEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEe--eCCCCEEEEEEECCCC
Confidence 8899999998777 378999999963 32 2333322 2234567899999875544 45678999987754 2
Q ss_pred eeee-----ee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCC--Cc--eeEeeEecc----CcccEEEEEEecC
Q 017642 250 RTKF-----IM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD--GT--LLQEVRRGA----DRAEIYSLAFSSN 314 (368)
Q Consensus 250 ~~~~-----~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~--~~--~~~~~~~~~----~~~~v~~l~~sp~ 314 (368)
.+.. .. ........++|+|+|++|+++++ ++. |.+||+.. ++ .+..+.... +......+.|+|+
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 2210 11 11234678999999999988877 677 99999973 32 233332210 1112346889999
Q ss_pred CCEEEEEe-CCCeEEEEEccCCC
Q 017642 315 AQWLAVSS-DKGTVHVFNLKVNS 336 (368)
Q Consensus 315 ~~~l~s~s-~dg~i~iwd~~~~~ 336 (368)
|++|+++. .++.|.+|+++...
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCC
Confidence 99998885 47899999996543
No 191
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.2e-13 Score=114.74 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=166.1
Q ss_pred ccccCCCCCEEEEEEcCC-CCEEEEEeCCeEEEEEecCCCcce----------EEEcccCCceeEEEEEEeCCeEEEEec
Q 017642 79 STSSSPPPTLLHISFNQD-HGCFAAGTDHGFRIYNCDPFREIF----------RRDFERGGGIGVVEMLFRCNILALVGG 147 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~-g~~l~~~~d~~i~iw~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~ 147 (368)
.+.......|+|++|-|. ++-|++|...+|.||..+...... ...+.+.+...|..|.|.+++..++++
T Consensus 134 ~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tA 213 (445)
T KOG2139|consen 134 KLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTA 213 (445)
T ss_pred eecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeec
Confidence 344455668999999996 457889999999999875322111 112224556889999999999999887
Q ss_pred CCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEE
Q 017642 148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAV 222 (368)
Q Consensus 148 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~ 222 (368)
+-+ +..|.|||..++..+.... ..+.+.-+.|+||+.+++ .|+..++|+... ....+-. ...+.+...+|
T Consensus 214 S~g----sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacW 288 (445)
T KOG2139|consen 214 SFG----SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACW 288 (445)
T ss_pred ccC----cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeee
Confidence 653 5889999999998776653 778899999999999887 599999996543 3333333 34458889999
Q ss_pred ecCCCeEEEEeecCCCCeEE-E-EecCc---c------ee---eee------ec---cCcceEEEEECCCCCEEEEEeCC
Q 017642 223 SQGVGSLVLVCPGLQKGQVR-V-EHYAS---K------RT---KFI------MA---HDSRIACFALTQDGQLLATSSTK 279 (368)
Q Consensus 223 ~~~~~~~~l~~~g~~dg~i~-i-~~~~~---~------~~---~~~------~~---~~~~i~~v~~sp~g~~l~s~~~d 279 (368)
+|+|..+++++.|+ -.++ + .+... . .+ ..+ .+ -.+++.+++|+|.|.+||+.-..
T Consensus 289 spcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 289 SPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 99999988887543 2222 1 11111 0 00 001 11 14578999999999999987654
Q ss_pred Cc-------EEEEEECCCCceeEeeE-eccCcccEEEEEEec---CCCEEEEEeCCCeEEEEEccC
Q 017642 280 GT-------LVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSS---NAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 280 g~-------~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp---~~~~l~s~s~dg~i~iwd~~~ 334 (368)
+. .|.+||.+..-.+.-.. +.........++|+| +|.+|..+=..|.|.-|++.-
T Consensus 367 ~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 367 QSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred CchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 42 16778876544432221 110111244566665 566776666778888887754
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.8e-14 Score=131.54 Aligned_cols=209 Identities=14% Similarity=0.068 Sum_probs=140.8
Q ss_pred eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeC
Q 017642 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 186 (368)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 186 (368)
.|.+||.+.... +.+. .+...+....|+|++..++..+.+. .+..|++||+.+++........+....++|+||
T Consensus 185 ~i~i~d~dg~~~---~~lt-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQ---FIVN-RSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCc---eEec-cCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence 488888765432 2232 5566788889999887666543220 014799999988865433334445567899999
Q ss_pred ccEEE----eCCc--EEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cceeeeeeccC
Q 017642 187 RIIVV----LEQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHD 258 (368)
Q Consensus 187 ~~~l~----~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~ 258 (368)
|+.++ .+|. |++||+.+++. ..+..+...+....|+|||+.++++ +..+|...||..+ +.....+ .+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~--s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFT--SDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEE--ECCCCCceEEEEECCCCCeEEe-cCC
Confidence 98776 2565 45557766654 4455556667789999999975544 3456777776543 3333333 333
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 259 ~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
. .++.|+|||++|+.++.++ +.+||+.+++....... . ....+.|+|||++|+.++.++.+.+|++.
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~--~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST--F--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC--C--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3 4678999999998888765 66799988876532222 1 23568899999999999999988888874
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.5e-13 Score=126.23 Aligned_cols=254 Identities=15% Similarity=0.201 Sum_probs=164.9
Q ss_pred CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (368)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~ 152 (368)
.........|.-.++|.++||.++++|+|. ||.|.+|.--. .......++-|=|...|.++.|+.++..+.+|+..
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-- 272 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-- 272 (792)
T ss_pred eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc--
Confidence 344556667888899999999999999999 88899997432 12222222335688899999999999999999998
Q ss_pred CCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC-----------CCe
Q 017642 153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-----------NPK 217 (368)
Q Consensus 153 ~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-----------~~v 217 (368)
+.+.+|.+.+++ .+-+. -.+.|..+.++||+.+.+ .|+.|.+....+.....++.+.. +-.
T Consensus 273 ---~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 273 ---GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred ---eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 999999999998 33333 789999999999998776 79999998875543322222111 011
Q ss_pred eEEEEecCCCe---------------------------------------------------EEEEee-------cCCCC
Q 017642 218 GLCAVSQGVGS---------------------------------------------------LVLVCP-------GLQKG 239 (368)
Q Consensus 218 ~~~~~~~~~~~---------------------------------------------------~~l~~~-------g~~dg 239 (368)
+.++++|..+. .++++. ...||
T Consensus 349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 12222221110 011110 11233
Q ss_pred eEEE--EecCccee------eeeeccCcceEEEEECC-CCC-EEEEEeCCCcEEEEEECCCCcee--------EeeEecc
Q 017642 240 QVRV--EHYASKRT------KFIMAHDSRIACFALTQ-DGQ-LLATSSTKGTLVRIFNTLDGTLL--------QEVRRGA 301 (368)
Q Consensus 240 ~i~i--~~~~~~~~------~~~~~~~~~i~~v~~sp-~g~-~l~s~~~dg~~i~iwd~~~~~~~--------~~~~~~~ 301 (368)
.+.+ |....... .....|+..+...++.+ ... ..++++.||. ++||-+...+.+ ....+..
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~-~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGD-FKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCe-EEEEEEecccccCcCccceEEeeeecc
Confidence 3333 54443211 11235666555555543 333 7899999999 999988332111 1122223
Q ss_pred CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
|..++.+++|+.||..|+. +.|++|.+||..+..
T Consensus 508 ~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~ 541 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKN 541 (792)
T ss_pred ccCcccchhhcCCCcEEEE-ecCCEEEEecCCChh
Confidence 6778999999999976655 578899999999853
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=6.1e-16 Score=131.99 Aligned_cols=196 Identities=15% Similarity=0.196 Sum_probs=169.4
Q ss_pred eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE
Q 017642 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL 207 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~ 207 (368)
.+-+.+.+..++..++-++.. |.|-.+|..+++...++.....|.++.|..+..+++ ....++||| ..|..+
T Consensus 130 FGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtEl 203 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTEL 203 (545)
T ss_pred cCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEE
Confidence 345678888999988888877 999999999999999999999999999999988887 578999999 568778
Q ss_pred EEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (368)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw 286 (368)
+.++.+ ..+..+.|-|.. ++|+ +++..|.++. +...++.+..+....+.+..++-+|-...+-+|..+|+ |.+|
T Consensus 204 HClk~~-~~v~rLeFLPyH--fLL~-~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlW 278 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYH--FLLV-AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLW 278 (545)
T ss_pred eehhhc-Cchhhhcccchh--heee-ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEec
Confidence 887654 467778888865 3444 4778999988 77777888888888889999999999999999999999 9999
Q ss_pred ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.-...+++..+.. |.++|.+|++.++|+++++.+.|..++|||++.-.+.
T Consensus 279 SP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 279 SPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred CCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 9999998888777 8999999999999999999999999999999987643
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.6e-13 Score=106.96 Aligned_cols=230 Identities=16% Similarity=0.230 Sum_probs=151.1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc------eEEEcc-cC---CceeEEEEEEe--CCeEEEEecCC
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI------FRRDFE-RG---GGIGVVEMLFR--CNILALVGGGP 149 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~------~~~~~~-~~---~~~~~~~~~~~--~~~~~~~s~~~ 149 (368)
..|+++|+.++|. ..+|++|+|+.|+=|.+....+. .+.... +. .--.+.+|..+ .+.+++++ .
T Consensus 59 qahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--G 134 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--G 134 (325)
T ss_pred cccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec--C
Confidence 6899999999998 45888888988999988644331 111110 01 11234455554 44555555 3
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEE-eeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCC--------e
Q 017642 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKL-RRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP--------K 217 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~-~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~--------v 217 (368)
| +.++-||+++|+..++++ |.+.|.++.- +.++.++. .||++++||.+++++++.+.....+ -
T Consensus 135 D-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 135 D-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred C-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence 3 999999999999999999 9999999998 56677776 7999999999999998888543221 1
Q ss_pred eEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (368)
...++.-+.+ .++| | ....+.+|.........+..-...+..+.|. ...++++++.+. |.-|.+ +|......
T Consensus 210 wigala~~ed--WlvC-G-gGp~lslwhLrsse~t~vfpipa~v~~v~F~--~d~vl~~G~g~~-v~~~~l-~Gvl~a~i 281 (325)
T KOG0649|consen 210 WIGALAVNED--WLVC-G-GGPKLSLWHLRSSESTCVFPIPARVHLVDFV--DDCVLIGGEGNH-VQSYTL-NGVLQANI 281 (325)
T ss_pred eeEEEeccCc--eEEe-c-CCCceeEEeccCCCceEEEecccceeEeeee--cceEEEeccccc-eeeeee-ccEEEEec
Confidence 1123333444 4666 3 3567888887764444444445567778885 346777887777 999975 55555555
Q ss_pred EeccCcccEEEEEEecCC-CEEEEEeCCCeEEEE
Q 017642 298 RRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVF 330 (368)
Q Consensus 298 ~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iw 330 (368)
... ....++..|+-.- ++|-.++....+.|+
T Consensus 282 p~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 282 PVE--STACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cCC--ccceeeecccCCceEEEEecccceeeeee
Confidence 543 2345666665433 344455666667665
No 196
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.63 E-value=2.6e-14 Score=117.17 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=126.3
Q ss_pred cCCceeEEEEee----C-ccEEE--eCCcEEEEEcCC-C--eEEEEEe--ccCCCeeEEEEecCCC--eEEEEeecCCCC
Q 017642 174 FRSEVRSVKLRR----D-RIIVV--LEQKIFVYNFAD-L--KLLHQIE--TIANPKGLCAVSQGVG--SLVLVCPGLQKG 239 (368)
Q Consensus 174 ~~~~v~~~~~~~----~-~~~l~--~d~~i~vwd~~~-~--~~~~~~~--~~~~~v~~~~~~~~~~--~~~l~~~g~~dg 239 (368)
|..+|.+++|++ + -..++ ....+.+|.... + +.++.+. .+......++|+-+.. ..++|+ |+.-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~-~G~~G 115 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA-GGYLG 115 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe-eccee
Confidence 678899999984 2 23334 466888888743 3 3344442 2445566788876654 356666 44899
Q ss_pred eEEE-EecCcceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCC
Q 017642 240 QVRV-EHYASKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQ 316 (368)
Q Consensus 240 ~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~ 316 (368)
.|+| +....+....+.+|...|+.+.++|+. ++|++++.|.. ||+|++++..++..|-+. .|...|.++.|+.+|.
T Consensus 116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd 194 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD 194 (385)
T ss_pred EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence 9999 666677788899999999999999976 58999999999 999999999999877542 2788999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCC
Q 017642 317 WLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 317 ~l~s~s~dg~i~iwd~~~~~~ 337 (368)
++++++.|.+|++|++..++-
T Consensus 195 ~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 195 RIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred eeeccCCcceEEEEecChhHH
Confidence 999999999999999986543
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=5.4e-14 Score=128.27 Aligned_cols=223 Identities=15% Similarity=0.101 Sum_probs=157.8
Q ss_pred eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCCcE--EE-----EEecCCce
Q 017642 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRC--IG-----ELSFRSEV 178 (368)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~~~--~~-----~~~~~~~v 178 (368)
.+.||++... ......+ .....+.++.|++.. ..+++|..+ |+|.+||++.+.. .. .-.|...+
T Consensus 223 ~~~vW~~~~p-~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred eEEEEecCCC-CCceEEE--ecCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 4889999765 3333444 567778888888744 455666666 9999999987654 22 22388999
Q ss_pred eEEEEeeCccE--EE---eCCcEEEEEcCCCeE------EEEEe------ccCCCeeEEEEecCCCeEEEEeecCCCCeE
Q 017642 179 RSVKLRRDRII--VV---LEQKIFVYNFADLKL------LHQIE------TIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (368)
Q Consensus 179 ~~~~~~~~~~~--l~---~d~~i~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i 241 (368)
..+.|..+..- ++ .||.|..|+++.... ..... .....++++.|.+.....+++ |+.+|.|
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v 372 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKV 372 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEE
Confidence 99999875332 33 799999999865322 11111 122356778898877766654 6789999
Q ss_pred EE-EecCc--ce------eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC-CCceeEeeEeccCcccEEEEEE
Q 017642 242 RV-EHYAS--KR------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAF 311 (368)
Q Consensus 242 ~i-~~~~~--~~------~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~ 311 (368)
.- ..... .. ...+..|.++|+++.++|-+..++..+.|.+ |+||... ...++..+.. +...|++++|
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaW 449 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAW 449 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEE
Confidence 87 33222 22 2345678899999999998875555445888 9999987 6677777766 5567999999
Q ss_pred ecCCC-EEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642 312 SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 312 sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
||-.. .++++..||.|.|||+......+...
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 99764 67778889999999998887776544
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.2e-13 Score=121.71 Aligned_cols=213 Identities=11% Similarity=0.054 Sum_probs=140.2
Q ss_pred EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (368)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (368)
|.+||.+..... .+. .+...+....|+|++..++...... .+..|++||+.+++........+.+..+.|+|||
T Consensus 181 l~~~d~dg~~~~---~lt-~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 181 LRVSDYDGYNQF---VVH-RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred EEEEcCCCCCCE---Eee-cCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 677776543332 121 4455677888988876655322100 0157999999888755444455566788999999
Q ss_pred cEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE--EecCcceeeeeeccCc
Q 017642 188 IIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDS 259 (368)
Q Consensus 188 ~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~ 259 (368)
+.++ .++ .|++||+.+++..+.. .+...+....|+|||+.++++. ..++...| ++..+.....+..+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCCCeEEeecCCC
Confidence 9877 133 5999999888665433 3344567789999999755543 33444455 4445544555554455
Q ss_pred ceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCe---EEEEEcc
Q 017642 260 RIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT---VHVFNLK 333 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~---i~iwd~~ 333 (368)
......|+|||++|+..+.+ .. |.+||+.+++.. .+... .......|+|||++|+.++.++. +.+++++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 56778999999988876543 24 888999888644 34321 22456789999999998887764 6777774
Q ss_pred C
Q 017642 334 V 334 (368)
Q Consensus 334 ~ 334 (368)
.
T Consensus 407 G 407 (429)
T PRK03629 407 G 407 (429)
T ss_pred C
Confidence 3
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=6.8e-14 Score=130.67 Aligned_cols=243 Identities=16% Similarity=0.242 Sum_probs=163.7
Q ss_pred CCCCEEEEEEcC--CCCEEEEEe-CCeEEEEEecCCC---cceEEEc---c---cCCceeEEEEEEeC-CeEEEEecCCC
Q 017642 84 PPPTLLHISFNQ--DHGCFAAGT-DHGFRIYNCDPFR---EIFRRDF---E---RGGGIGVVEMLFRC-NILALVGGGPD 150 (368)
Q Consensus 84 h~~~v~~~~~s~--~g~~l~~~~-d~~i~iw~~~~~~---~~~~~~~---~---~~~~~~~~~~~~~~-~~~~~~s~~~d 150 (368)
....|+.+.+-. |..++.+|+ |+.|+||+--... ..+...+ . ......-.-+.|.. .+..+++|+-
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~- 1186 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV- 1186 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-
Confidence 445778877743 445777787 8889999743221 1111111 0 01111112334433 4555555543
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCe---EEEEEeccCCC--eeE
Q 017642 151 PQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK---LLHQIETIANP--KGL 219 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~---~~~~~~~~~~~--v~~ 219 (368)
..|+|||......+..+. ....|+++.-+- .|..++ .||.|++||.+... .+...+.|... |..
T Consensus 1187 -----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1187 -----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred -----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 799999999888888876 445566665443 345555 79999999997542 45566677776 888
Q ss_pred EEEecCCCeEEEEeecCCCCeEEEEecCcceee---eeeccC--c-ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHD--S-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (368)
Q Consensus 220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~~~~--~-~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~ 293 (368)
+.+.+.|-.- ++ +|+.+|.|++|+....... .+..|. + ..+++..+++..++|+|+. +. |+||++ .|+.
T Consensus 1262 ~slq~~G~~e-lv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~ 1336 (1387)
T KOG1517|consen 1262 LSLQRQGLGE-LV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQ 1336 (1387)
T ss_pred EEeecCCCcc-ee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhh
Confidence 8888877652 33 4889999999888773222 233333 3 5899999999999999998 77 999997 4554
Q ss_pred eEeeEe-----ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 294 LQEVRR-----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 294 ~~~~~~-----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
+..++. +...+.+.+++|+|..-+||+|+.|.+|.||..++++.
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 444442 11345789999999999999999999999999876543
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.3e-14 Score=122.66 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=141.7
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642 89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (368)
Q Consensus 89 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~ 167 (368)
.+++|+.+|..|++|+ |+.+|||++........ .. .|...|-++.|++++.++++-+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--e~-~~~~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--EI-AHHAEVKDLDFSPDGKFLASIGAD------SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--hH-hhcCccccceeCCCCcEEEEecCC------ceEEEEeccCc
Confidence 7899999999999998 99999999876555432 22 788899999999999999998873 89999999997
Q ss_pred EEEEEe---cCCceeEEEEeeCc-----cEEE---eCCcEEEEEcCCCeE-----EEEEeccCCCeeEEEEecCCCeEEE
Q 017642 168 CIGELS---FRSEVRSVKLRRDR-----IIVV---LEQKIFVYNFADLKL-----LHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 168 ~~~~~~---~~~~v~~~~~~~~~-----~~l~---~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
.+.+.. .+.....+.|+.|+ ++++ -.+.|+.||+..... .+........+.+++++.+|+. +
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~ 296 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--L 296 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--E
Confidence 776665 34456777888876 2223 245677776632111 1111123447889999999995 4
Q ss_pred EeecCCCCeEEEE-ecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 232 VCPGLQKGQVRVE-HYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 232 ~~~g~~dg~i~i~-~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
+. |+.||.|.|+ ..+.+.++.. +.|...|+.+.|+||.+++++.+.+.. +.|..+.-
T Consensus 297 Al-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v 355 (398)
T KOG0771|consen 297 AL-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV 355 (398)
T ss_pred EE-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence 44 7789999994 4444555544 579999999999999999999988888 88887654
No 201
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.8e-13 Score=121.58 Aligned_cols=218 Identities=12% Similarity=0.055 Sum_probs=144.3
Q ss_pred EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (368)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (368)
|.++|.+.... +.+. .+...+....|++++..++..+... .+..|++||+.+++......+.+.+...+|+|||
T Consensus 184 l~~~d~dg~~~---~~lt-~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 184 LAIMDQDGANV---RYLT-DGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEECCCCCCc---EEEe-cCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 66666543322 2232 4556788888988876655432210 1268999999988765443467778899999999
Q ss_pred cEEE----eC--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcce
Q 017642 188 IIVV----LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (368)
Q Consensus 188 ~~l~----~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i 261 (368)
+.++ .+ ..|++||+.+++.. .+..+........|+|||+.++++........|++++..+.....+..+...+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 8765 23 45888899877654 44445555667899999998665542222335666776666666665555567
Q ss_pred EEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC------CeEEEEEc
Q 017642 262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------GTVHVFNL 332 (368)
Q Consensus 262 ~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------g~i~iwd~ 332 (368)
....|+|||++|+....++ . |.+||+..+.. ..+.. ...+..+.|+|||+.|+..+.+ ..|+++|+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 7789999999888766432 4 88899765543 34432 2246788999999988765542 25778887
Q ss_pred cCCCC
Q 017642 333 KVNSG 337 (368)
Q Consensus 333 ~~~~~ 337 (368)
..+..
T Consensus 412 ~g~~~ 416 (435)
T PRK05137 412 TGRNE 416 (435)
T ss_pred CCCce
Confidence 65544
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=8.2e-15 Score=120.15 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=150.8
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcE
Q 017642 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRC 168 (368)
Q Consensus 90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~ 168 (368)
-++|||+|+++|+..+..+.|-|.++.+.... +. --..+.-+.|..+..++ +....+ +.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~ql--f~--cldki~yieW~ads~~ilC~~yk~-----~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQL--FL--CLDKIVYIEWKADSCHILCVAYKD-----PKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHH--HH--HHHHhhheeeeccceeeeeeeecc-----ceEEEEEeeccee
Confidence 35899999999999988888888877665322 21 11223344454444443 334444 8999999999998
Q ss_pred EEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642 169 IGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV 243 (368)
Q Consensus 169 ~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i 243 (368)
...+. ...++..++|+|||+.+. .+-.|.+|.+.+.+... ++-....+..++|++||+...++. -.|..=++
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~s--RrDCkdyv 160 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILS--RRDCKDYV 160 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeee--cccHHHHH
Confidence 88888 788999999999998777 47899999998876543 333445568899999999766543 22322111
Q ss_pred --E-ecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEE
Q 017642 244 --E-HYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (368)
Q Consensus 244 --~-~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 320 (368)
. -.....++.+....-..+.+.|+|||..|| |||.--.-.+..+.. .-.+..+.|+|.+++|+.
T Consensus 161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la----------Vwd~~Leykv~aYe~---~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA----------VWDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HHHhhHHHHHHHhcCCCcccccCceECCCCcEEE----------Eecchhhheeeeeee---ccceeEEEeccccceEEe
Confidence 1 111233445555566788999999997654 555322222333432 246899999999999999
Q ss_pred EeCCCeEEEEEccC
Q 017642 321 SSDKGTVHVFNLKV 334 (368)
Q Consensus 321 ~s~dg~i~iwd~~~ 334 (368)
|+.|+.+||.+--+
T Consensus 228 GsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFT 241 (447)
T ss_pred eccchhhhhhceee
Confidence 99999998865433
No 203
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.3e-13 Score=118.17 Aligned_cols=114 Identities=9% Similarity=0.196 Sum_probs=93.8
Q ss_pred cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECC
Q 017642 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTL 289 (368)
Q Consensus 213 ~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~ 289 (368)
..++|.++.|++++..+.+++ |.+--.+.|++.++..+..+. .++=+++-|+|.|++|+.++- .|. |.|||+.
T Consensus 269 k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~ 344 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVP 344 (566)
T ss_pred CCCCceEEEECCCCCEEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEecc
Confidence 467899999999999888777 888899999998888877664 445678999999998887765 467 9999999
Q ss_pred CCceeEeeEeccCcccEEEEEEecCCCEEEEEeC------CCeEEEEEccC
Q 017642 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKV 334 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~ 334 (368)
+.+++..+... .-+-+.|+|||+++++++. |+.++||++.-
T Consensus 345 n~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 345 NRKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred chhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 98888887752 3466899999999998864 67899999853
No 204
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=5e-14 Score=116.07 Aligned_cols=178 Identities=15% Similarity=0.250 Sum_probs=129.3
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeC----ccEEE-eCCcEEEEEcCCCeEEEEEe--ccC-CCeeEEEEecCC
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD----RIIVV-LEQKIFVYNFADLKLLHQIE--TIA-NPKGLCAVSQGV 226 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~----~~~l~-~d~~i~vwd~~~~~~~~~~~--~~~-~~v~~~~~~~~~ 226 (368)
|.|++||..+++.+..++ +...+..++|..+ +.+.+ .||+|++||++.......+. .+. .+..+++....+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 999999999999999999 8888888888763 33333 79999999998876554443 232 234444443333
Q ss_pred CeEEEEeecC----CCCeEEEEecCcce--ee-eeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCc----ee
Q 017642 227 GSLVLVCPGL----QKGQVRVEHYASKR--TK-FIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGT----LL 294 (368)
Q Consensus 227 ~~~~l~~~g~----~dg~i~i~~~~~~~--~~-~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~----~~ 294 (368)
+ ++++ |. .+-.+.+|+.+... +. -...|...|+++.|+|.. ++|++|+.||- |.|||+.... ++
T Consensus 130 ~--ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 130 N--IIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEEDALL 205 (376)
T ss_pred C--eEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcchhhHH
Confidence 3 4554 53 24566778876533 33 356899999999999965 59999999999 9999987542 23
Q ss_pred EeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCCCC
Q 017642 295 QEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 295 ~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
..+. +...|..+.|..++ +.|.+-+..++..+|+++.+....-
T Consensus 206 ~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 206 HVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred Hhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 3333 56679999999877 4577778889999999999875443
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.1e-13 Score=114.36 Aligned_cols=243 Identities=15% Similarity=0.145 Sum_probs=171.5
Q ss_pred CCCCEEEEEEcCCCC--EEEEEe-CCeEEEEEecCCCcceEE----EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 84 PPPTLLHISFNQDHG--CFAAGT-DHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 84 h~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
....|..++|.-+++ .|.... +..+..+.+......-.. .. +.....+..+......+.++..+ |
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~dg~Litc~~s-------G 125 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLADGTLITCVSS-------G 125 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhcCCEEEEEecC-------C
Confidence 345788888876654 455443 556777766544433211 11 24455666666665555555443 8
Q ss_pred cEEEEeCCCC----cEEEEEecCCceeEEEEeeCccEEE-e---C--CcEEEEEcCCCeEEEEEeccCC---------Ce
Q 017642 157 KVMIWDDHQS----RCIGELSFRSEVRSVKLRRDRIIVV-L---E--QKIFVYNFADLKLLHQIETIAN---------PK 217 (368)
Q Consensus 157 ~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~-~---d--~~i~vwd~~~~~~~~~~~~~~~---------~v 217 (368)
.+.+|..+.+ ..+..+.....+..|.-.+....++ . . ..+.+||++..+.+..-+...+ .+
T Consensus 126 ~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 126 NLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred cEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeee
Confidence 9999998754 3445555567788888777666555 2 2 4689999988765544332111 23
Q ss_pred eEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE
Q 017642 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~ 295 (368)
+.+.|-+......+++ +..-+++++|+... +++..+.-.+.+|+++...|+|+++++|...|. +..||++.++...
T Consensus 206 tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLG 283 (412)
T ss_pred ccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeec
Confidence 4566766533333443 56789999977654 566777777889999999999999999999999 9999999999887
Q ss_pred e-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 296 E-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 296 ~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
. +.+ -.+.|.+|..+|.+++|++++-|+.|||+|+++.+..
T Consensus 284 ~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 284 CGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 7 554 5789999999999999999999999999999985543
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.3e-13 Score=123.00 Aligned_cols=221 Identities=13% Similarity=0.061 Sum_probs=144.2
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEec-CCCCCCCC
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYPL 155 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~ 155 (368)
...+...+.+.+|+|||+.|+..+ +..+.+|++.+++......+. .......|+|++..++.. ..+ ..
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~---g~ 266 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKT---GS 266 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC----CCcCCeEECCCCCEEEEEEcCC---CC
Confidence 344566899999999999998754 234889998776543322232 223356788887655532 222 01
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--CC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
..|++||+.+++......+...+....|+|||+.++ . ++ .|+++|+.+++.. .+...........|+|||+.+
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEE
Confidence 369999998887655544566788999999999776 3 23 4666677666543 333333445568899999986
Q ss_pred EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--EEEEEECCCCceeEeeEeccCcccEE
Q 017642 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGADRAEIY 307 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (368)
+++........|.+++........+... .......|+|||++|+.++.++. .+.++++ +|+....+.. |.+.+.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~--~~~~~~ 421 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA--TDGQVK 421 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc--CCCCcC
Confidence 5543212223566677665555555432 22456789999999998887764 2567776 5666667765 667788
Q ss_pred EEEEec
Q 017642 308 SLAFSS 313 (368)
Q Consensus 308 ~l~~sp 313 (368)
..+|+|
T Consensus 422 ~p~Wsp 427 (429)
T PRK03629 422 FPAWSP 427 (429)
T ss_pred CcccCC
Confidence 899987
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=2.3e-13 Score=111.29 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=160.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC-cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
-..+|+|.+|++|+..+|++. .+.|.||.....+ -....++. .|...+..+.|.+....+++++.| ..-++|
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw 82 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVW 82 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC-----CCcccc
Confidence 356899999999999999999 5569999988766 44445665 788889999999999999999988 999999
Q ss_pred eC-CCCc--EEEEE-ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE----EEEeccCCCeeEEEEecCCCeEE
Q 017642 162 DD-HQSR--CIGEL-SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL----HQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 162 d~-~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
.. ..++ +...+ ++...++++.|+|.+..++ ....|.||-++...-- +.-+.+...|.+++|+|++- +
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--L 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--L 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--e
Confidence 98 4443 33333 4899999999999988777 3457788877543321 11123456788899998873 3
Q ss_pred EEeecCCCCeEEEEecCc-------------------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Q 017642 231 LVCPGLQKGQVRVEHYAS-------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (368)
Q Consensus 231 l~~~g~~dg~i~i~~~~~-------------------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~ 291 (368)
++ .|+.|+..+++..-- ..+..+....+.+..+.|+|+|..|+-.+.|.. +.+-|....
T Consensus 161 la-aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p 238 (361)
T KOG1523|consen 161 LA-AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGP 238 (361)
T ss_pred ec-ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCC
Confidence 44 489999999843211 112223345678999999999999999999999 999987655
Q ss_pred c-eeEeeEeccCcccEEEEEEecCCC
Q 017642 292 T-LLQEVRRGADRAEIYSLAFSSNAQ 316 (368)
Q Consensus 292 ~-~~~~~~~~~~~~~v~~l~~sp~~~ 316 (368)
. .+..+.. ..-+..++.|-.+..
T Consensus 239 ~~~v~~~~~--~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 239 SERVQSVAT--AQLPLLSVSWISENS 262 (361)
T ss_pred chhccchhh--ccCCceeeEeecCCc
Confidence 4 3334433 225677777755433
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3e-13 Score=123.80 Aligned_cols=214 Identities=10% Similarity=0.090 Sum_probs=139.1
Q ss_pred EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (368)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (368)
|.+||.+.... +.+. .+...+....|++++..++..+.+. ....|++||+.+++........+.....+|+|||
T Consensus 186 l~i~D~~g~~~---~~lt-~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 186 LQVADSDGYNP---QTIL-RSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEECCCCCCc---eEee-cCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 77787653322 2232 4555677888888876655543220 0157999999888765443355566688999999
Q ss_pred cEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe--EEEEecCcceeeeeeccCc
Q 017642 188 IIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDS 259 (368)
Q Consensus 188 ~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~ 259 (368)
+.++ .++ .|++||+.+++.. .+..+.......+|+|||+.+++.. ..+|. |++++........+..+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence 8765 233 6999999888654 3444444456789999999755543 34444 4445544444444443444
Q ss_pred ceEEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC---CeEEEEEcc
Q 017642 260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK 333 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~ 333 (368)
....++|+|||++|+..+.++ . |.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|+++++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 455789999999888765433 5 899999887755 4432 2234567999999988776643 357788875
Q ss_pred CC
Q 017642 334 VN 335 (368)
Q Consensus 334 ~~ 335 (368)
.+
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 43
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.4e-13 Score=124.40 Aligned_cols=179 Identities=14% Similarity=0.076 Sum_probs=123.2
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
..|.+||...+.......+...+...+|+|||+.++ . +..|++||+.+++... +....+......|+|||+.+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 469999975444433334777899999999998877 2 2469999998876543 33334445578999999986
Q ss_pred EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC-CCc-EEEEEECCCCceeEeeEeccCcccEE
Q 017642 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY 307 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (368)
+++.+...+..|++++........+..+......++|+|||+.|+.++. +|. .|.++|+.+++.. .+.. +.....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~--~g~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF--QGNYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec--CCCCcc
Confidence 6554332234677788777666677666666678999999998887764 333 1666677666643 3322 223445
Q ss_pred EEEEecCCCEEEEEeCCC---eEEEEEccCCCCC
Q 017642 308 SLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGS 338 (368)
Q Consensus 308 ~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~ 338 (368)
.++|+|||++|+..+.++ .|++||+.+++..
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 789999999988765433 6999999776543
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3e-13 Score=118.72 Aligned_cols=242 Identities=13% Similarity=0.227 Sum_probs=174.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEE-Ee-CCeEEEEEecCCCcceEEEcccCCce-----------------------------
Q 017642 82 SSPPPTLLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREIFRRDFERGGGI----------------------------- 130 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~-~~-d~~i~iw~~~~~~~~~~~~~~~~~~~----------------------------- 130 (368)
-.|+..-+.|..+|||+|+.+ |. .-.|++||+......+.+.+. ...+
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD-ae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD-AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc-ccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 356677788999999998855 44 455999999877666555543 1110
Q ss_pred --------eEEEEEEe-CC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcE
Q 017642 131 --------GVVEMLFR-CN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKI 196 (368)
Q Consensus 131 --------~~~~~~~~-~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i 196 (368)
...++.++ ++ .+++++.+ ..|+-++++.|..+..+. ..+.++++..++-..+++ .+|.|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg-------~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSG-------SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecC-------cceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 01122222 11 23333333 579999999999999998 568999999999877777 58999
Q ss_pred EEEEcCCCeEEEEEec------cCC-----CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccC--cceEE
Q 017642 197 FVYNFADLKLLHQIET------IAN-----PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--SRIAC 263 (368)
Q Consensus 197 ~vwd~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~--~~i~~ 263 (368)
..||.++...+..+.. +.+ .|+++.|+.+| +-+++ |..+|.+.|++...........|. -+|..
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--L~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--LHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKK 276 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCc--eeEEe-eccCCcEEEEEcccCCceeecccCCccceee
Confidence 9999988776665542 222 37788888775 44665 889999999887776665666654 47889
Q ss_pred EEECCC--CCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 264 FALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 264 v~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
+.|.+. +..|++.. ... ++|||-.+|+....+.. ...+..+++-|++.++.++-+++.+..|=+..-.+.|
T Consensus 277 l~~~~~~~q~~v~S~D-k~~-~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSMD-KRI-LKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred ecccccCCCceEEecc-hHH-hhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 999775 33555443 334 99999999998877774 4569999999999999999999888888777665554
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.8e-13 Score=111.24 Aligned_cols=238 Identities=18% Similarity=0.193 Sum_probs=155.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMI 160 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~v 160 (368)
-.+-.+..++|++.-..+|++. |..|++|+-.. ... ..+++.....+.+++|.|... .++.+.. +.|.+
T Consensus 96 ws~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~p--t~Lks~sQrnvtclawRPlsaselavgCr------~gIci 166 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCP--TKLKSVSQRNVTCLAWRPLSASELAVGCR------AGICI 166 (445)
T ss_pred hhhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCC--ceecchhhcceeEEEeccCCcceeeeeec------ceeEE
Confidence 3455788999999766777777 88999999665 222 223334556677888876432 3333333 67999
Q ss_pred EeCCCC----c--------EEEEEe--cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEE
Q 017642 161 WDDHQS----R--------CIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAV 222 (368)
Q Consensus 161 wd~~~~----~--------~~~~~~--~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 222 (368)
|..... . +...++ ....|++|.|++||..++ .|..|.|||..++.++.......+.+.-+.|
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW 246 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence 975421 1 112233 346899999999999988 5889999999998877666455677888999
Q ss_pred ecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-Cc--------
Q 017642 223 SQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-GT-------- 292 (368)
Q Consensus 223 ~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-~~-------- 292 (368)
+||++.++.+ .-|+..++|.... -.........+.|....|+|+|++|+.+.... -++|.+.- ++
T Consensus 247 SPdgd~lfaA---t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 247 SPDGDVLFAA---TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred cCCCCEEEEe---cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcc
Confidence 9999975533 3699999995443 22222223344899999999999665544433 24554421 00
Q ss_pred ------eeEeeE-----ec--cCcccEEEEEEecCCCEEEEEeCCC--------eEEEEEccC
Q 017642 293 ------LLQEVR-----RG--ADRAEIYSLAFSSNAQWLAVSSDKG--------TVHVFNLKV 334 (368)
Q Consensus 293 ------~~~~~~-----~~--~~~~~v~~l~~sp~~~~l~s~s~dg--------~i~iwd~~~ 334 (368)
.+..+. .+ .-.+.+.+++|.|.|.+||+.-..+ .|.+||.+.
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 011111 00 0135789999999999999875433 356676654
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.7e-13 Score=125.86 Aligned_cols=241 Identities=16% Similarity=0.185 Sum_probs=157.0
Q ss_pred CEEEEEEcCCCCEEEEEeCC-eEEEEEecCCCcceEEEcccCCceeEEEEEEe--CCeEEEEecCCCCCCCCCcEEEEeC
Q 017642 87 TLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~~~~~i~vwd~ 163 (368)
.-..+.|+|-...+++++|+ .|+|||.+.++..............|..+.+- .+...+.+++.| |.|+||+-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIRIwk~ 1140 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIRIWKD 1140 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC-----ceEEEecc
Confidence 34567888888889988844 59999998766542211111233445555553 345556666666 99999973
Q ss_pred C-C----CcEEEEEe--------cCCceeEEEEeeC-ccEEEe--CCcEEEEEcCCCeEEEEEecc-CCCeeEEEEecCC
Q 017642 164 H-Q----SRCIGELS--------FRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGV 226 (368)
Q Consensus 164 ~-~----~~~~~~~~--------~~~~v~~~~~~~~-~~~l~~--d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 226 (368)
- + .+.+..+. ..+.-.-+.|... |.+++. -..|+|||....+++..+... ...++++.-.-..
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 2 2 22332221 1111234556664 444442 358999999887777766432 2334444333333
Q ss_pred CeEEEEeecCCCCeEEEEecCcc----eeeeeeccCcc--eEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642 227 GSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSR--IACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (368)
Q Consensus 227 ~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~--i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (368)
.. ++++ |..||.|+++|.... .+...+.|... |..+.+.+.|- .|++|+.||. |++||++.......+..
T Consensus 1221 gn-~i~A-GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1221 GN-IIAA-GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred Cc-eEEE-eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCccccccee
Confidence 22 3443 889999999887653 45567788877 99999998776 5999999999 99999987432222221
Q ss_pred ccCc--c-cEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 300 GADR--A-EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 300 ~~~~--~-~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
..|. + .++++..+++...+|+|+. +.|+||++.-.+
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 1122 3 5899999999999999988 899999997543
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=3.4e-13 Score=110.31 Aligned_cols=199 Identities=17% Similarity=0.153 Sum_probs=155.3
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC---cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEE
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYN 200 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd 200 (368)
....+.+.+|+.+...++.+-.. ..|.||..... +..++++ |...|++++|+|....++ .|..-+||.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~-----~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNN-----HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred ccCceeeeeecCCCceEEeccCC-----ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 34568899999998888887765 78999986654 4677777 999999999999987666 699999999
Q ss_pred cC-CC--eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee-----eeeccCcceEEEEECCCCCE
Q 017642 201 FA-DL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDGQL 272 (368)
Q Consensus 201 ~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-----~~~~~~~~i~~v~~sp~g~~ 272 (368)
.. .+ +....+..+....+++.|+|.++.+ ++ |+.-..|.|+..+.+.-- .-+.+...|+++.|+|++-+
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkF--AV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKF--AV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceE--Ee-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 84 33 3344455677889999999999863 33 666788888666654432 23456778999999999999
Q ss_pred EEEEeCCCcEEEEEECC-----C-------------CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 273 LATSSTKGTLVRIFNTL-----D-------------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 273 l~s~~~dg~~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
|++|+.|+. .|||..- . |+++.++.. ..+.|..+.|+|+|..|+-.+.|..+.+-|...
T Consensus 161 laaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 161 LAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 999999999 9998641 1 234444432 467899999999999999999999999999877
Q ss_pred CCC
Q 017642 335 NSG 337 (368)
Q Consensus 335 ~~~ 337 (368)
+.+
T Consensus 238 p~~ 240 (361)
T KOG1523|consen 238 PSE 240 (361)
T ss_pred Cch
Confidence 754
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=7.6e-15 Score=133.68 Aligned_cols=201 Identities=14% Similarity=0.219 Sum_probs=157.6
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA 202 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~ 202 (368)
+|...|.|..|+..+..++++++| ..++||..+++.++.... |.+.|+.++.+.++.+++ .|..|++|-+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 788899999999999999999998 999999999999999998 999999999999988887 58889999999
Q ss_pred CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeee----------------------------
Q 017642 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI---------------------------- 254 (368)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~---------------------------- 254 (368)
++.++..+.+|.+.|++++|+|-. +.+.||++++|+.....+...
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999975 245799999988773221110
Q ss_pred ---eccCcceEEEEECCCCCEEEE-----------EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEE
Q 017642 255 ---MAHDSRIACFALTQDGQLLAT-----------SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLA 319 (368)
Q Consensus 255 ---~~~~~~i~~v~~sp~g~~l~s-----------~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~ 319 (368)
......+.+++|...+-.+++ +-.+-. +++|++.+|...+.+.+ |...+..+.++|-.. ...
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCCCcHhhh
Confidence 000011222333333223333 333444 88899999988888887 677889999999554 556
Q ss_pred EEeCCCeEEEEEccCCCCCCCCC
Q 017642 320 VSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 320 s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
+++.||.+.|||+-.+.+++...
T Consensus 413 sag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred hccCCCceEeeecccCCcceeee
Confidence 88999999999999988776544
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.1e-12 Score=119.61 Aligned_cols=174 Identities=15% Similarity=0.101 Sum_probs=118.3
Q ss_pred CcEEEEeCCCCcEEEEE-ecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642 156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (368)
..|.++|.. +.....+ .+...+.+.+|+|||+.++ . ...|++||+.+++... +....+......|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 578888864 4443344 4778899999999998887 2 2369999998887543 3333445567899999998
Q ss_pred EEEEeecCCCCeEEEEe--cCcceeeeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEEC--CCCceeEeeEeccCc
Q 017642 229 LVLVCPGLQKGQVRVEH--YASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNT--LDGTLLQEVRRGADR 303 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i~~--~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~--~~~~~~~~~~~~~~~ 303 (368)
+++.. +.+|...||. ..+.....+..+........|+|||+.|+..+. +|. ..||.+ .+++.. .+.. ..
T Consensus 254 la~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~-~lt~--~g 327 (427)
T PRK02889 254 LAVAL--SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQ-RVTF--TG 327 (427)
T ss_pred EEEEE--ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceE-EEec--CC
Confidence 65543 4567666644 444555666666666677899999998876654 455 666654 444432 2222 22
Q ss_pred ccEEEEEEecCCCEEEEEeCCC---eEEEEEccCCCC
Q 017642 304 AEIYSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSG 337 (368)
Q Consensus 304 ~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~ 337 (368)
.......|+|||++|+..+.++ .|++||+.+++.
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 2345678999999998776554 699999987654
No 216
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=6.5e-14 Score=124.22 Aligned_cols=177 Identities=12% Similarity=0.133 Sum_probs=135.7
Q ss_pred CcEEEEeCCCCc-----EEEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCC-------eEEEEEeccCCCeeE
Q 017642 156 NKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL-------KLLHQIETIANPKGL 219 (368)
Q Consensus 156 ~~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~ 219 (368)
|.|-||+++... .+-.+.....|+++.|.| |...++ .||.|++|.+..+ .....+..|...|..
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 899999987532 233444677899999999 444443 7999999999653 345567789999999
Q ss_pred EEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEee
Q 017642 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEV 297 (368)
Q Consensus 220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~ 297 (368)
+.|+|-...+ |++ ++.|-+|++|+... .....+.+|.+.|..++|+|||+.+|+.+.||+ |+||+-++++. +++-
T Consensus 683 lRfHPLAadv-La~-asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 683 LRFHPLAADV-LAV-ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG 759 (1012)
T ss_pred EEecchhhhH-hhh-hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence 9999976653 343 67899999988765 555678999999999999999999999999999 99999887653 3333
Q ss_pred EeccCcccEEEEEEecCCCEEEEEeCC----CeEEEEEccCCC
Q 017642 298 RRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS 336 (368)
Q Consensus 298 ~~~~~~~~v~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~ 336 (368)
++. -...-..|.|.-||+++++.+.| +.|.+||.++-.
T Consensus 760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 322 22344678899999999887765 458889887654
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.5e-12 Score=116.45 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=125.9
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCc--EEEEE
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQK--IFVYN 200 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~--i~vwd 200 (368)
.+...+....|+|++..++..+.+. ....|++||+.+++........+.+...+|+|||+.++ .++. |+++|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4455677888988886655433210 01469999999887654433556677899999998776 3555 45555
Q ss_pred cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec--CcceeeeeeccCcceEEEEECCCCCEEEEEeC
Q 017642 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (368)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~ 278 (368)
+..++ .+.+..+........|+|||+.++++. ..+|...+|.. .+.....+..+.......+|+|||++|+..+.
T Consensus 271 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 271 ADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 55444 444544444556688999999865543 34455555443 33333333323333456889999999887765
Q ss_pred CC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC---eEEEEEc
Q 017642 279 KG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNL 332 (368)
Q Consensus 279 dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~ 332 (368)
++ . |.+||+.+++.. .+.. ........|+|||+.|+.++.++ .+++.++
T Consensus 348 ~~g~~~-I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 348 VGGAFK-LYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCCcEE-EEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 54 5 999999888754 3332 12346789999999988776443 3555555
No 218
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.55 E-value=2.8e-14 Score=124.07 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=127.5
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
|.+.+.+ +.++....+. |.+.+.+-.|++||.-++ .||.|++|. ++|-+..++.....+|.|++|.|+.+.+++
T Consensus 85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 85 GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 8898888 6677777777 999999999999998777 699999999 567665566556778999999999987443
Q ss_pred EeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 232 VCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 232 ~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
| ..+.+.| -......+...++|.+-|.++.|++...++++|++|-. .+||| ..|..+..-.. |..+|++++
T Consensus 163 -c---~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD-~~G~~Lf~S~~--~ey~ITSva 234 (737)
T KOG1524|consen 163 -C---QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWD-AQGANLFTSAA--EEYAITSVA 234 (737)
T ss_pred -e---cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeec-ccCcccccCCh--hccceeeee
Confidence 3 3577888 33444556678999999999999999999999999999 99999 46676655555 778999999
Q ss_pred EecCCCEEEEEeC
Q 017642 311 FSSNAQWLAVSSD 323 (368)
Q Consensus 311 ~sp~~~~l~s~s~ 323 (368)
|.|+ +.++.++.
T Consensus 235 ~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 235 FNPE-KDYLLWSY 246 (737)
T ss_pred eccc-cceeeeee
Confidence 9999 66666654
No 219
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=6.5e-14 Score=117.84 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=130.4
Q ss_pred cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCe---------EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642 174 FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLK---------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (368)
Q Consensus 174 ~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~ 240 (368)
...+|..+.|.++.. .++ .|..|++|-++.+. .+..+..|...|+++.|+|+|+ ++| +|+.+|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLA-Sg~D~g~ 88 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLA-SGGDGGE 88 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eee-ecCCCce
Confidence 456788889988766 666 58899999985421 2345567899999999999998 355 4888999
Q ss_pred EEEEecC--------c---------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc
Q 017642 241 VRVEHYA--------S---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (368)
Q Consensus 241 i~i~~~~--------~---------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 303 (368)
+.+|... . ...+.+.+|...|..++|+|++.++++++.|.. +++||+..|+....+.. |.
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns-~~l~Dv~~G~l~~~~~d--h~ 165 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS-VRLWDVHAGQLLAILDD--HE 165 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce-EEEEEeccceeEeeccc--cc
Confidence 9999766 1 123456789999999999999999999999999 99999999999988887 77
Q ss_pred ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
..+..++|.|-++++++-+.|...+++.+...+..
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence 89999999999999999998887777776655443
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=8.1e-14 Score=121.28 Aligned_cols=184 Identities=15% Similarity=0.217 Sum_probs=126.6
Q ss_pred CcEEEEeCCCCc----EEEEEe-cCCceeEEEEe-----eCcc-EEE--eCCcEEEEEcCCCeEEEEEe----ccCCCee
Q 017642 156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLR-----RDRI-IVV--LEQKIFVYNFADLKLLHQIE----TIANPKG 218 (368)
Q Consensus 156 ~~i~vwd~~~~~----~~~~~~-~~~~v~~~~~~-----~~~~-~l~--~d~~i~vwd~~~~~~~~~~~----~~~~~v~ 218 (368)
..+++|+.+.+. .+.... ......+-+|+ +.+. +++ .-|.|.+.|....+..+.+. .....++
T Consensus 144 ~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT 223 (636)
T KOG2394|consen 144 RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVT 223 (636)
T ss_pred CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceE
Confidence 578999877432 221111 22233344442 2232 333 56888888875532222111 1236789
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEEEecCc-----------------------------ceeeeeeccCcceEEEEECCC
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----------------------------KRTKFIMAHDSRIACFALTQD 269 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-----------------------------~~~~~~~~~~~~i~~v~~sp~ 269 (368)
++.|-+.++.+++++ -.+|.+++++... .++..+.--.+.|...+|+||
T Consensus 224 ~ikWvpg~~~~Fl~a--~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 224 CIKWVPGSDSLFLVA--HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred EEEEEeCCCceEEEE--EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence 999999998877764 4678888864321 111112223447888999999
Q ss_pred CCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
|++||+.+.||. +||||..+.+++..++. .-+...|++|||||++|++|++|.-|.||.+..++-...-+++
T Consensus 302 G~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 302 GKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred CceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence 999999999999 99999999888877765 5678999999999999999999999999999988877665555
No 221
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.4e-13 Score=120.41 Aligned_cols=210 Identities=15% Similarity=0.158 Sum_probs=151.8
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc--------ceEEEcccCCceeEEEEEEeCCeEEEEecCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--------IFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 149 (368)
-..+.|.++|.|+++.+++..+.+|+ |+.|+.|++..... .+...+. +|...++.++++.....+++++.
T Consensus 338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecC
Confidence 45679999999999999999999999 99999997642211 2223343 88889999999998888999988
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCc-cEEEeCCcEEEEE---cCCCeEEEEEecc-------CC
Q 017642 150 DPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDR-IIVVLEQKIFVYN---FADLKLLHQIETI-------AN 215 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~d~~i~vwd---~~~~~~~~~~~~~-------~~ 215 (368)
| |++++|+...... .++. ..+.-..+.+-... ...+.+.....++ ++....+..+... ..
T Consensus 417 D-----gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 417 D-----GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred C-----ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 8 9999999776655 4443 23334455554433 1222344444333 3334333333211 13
Q ss_pred CeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (368)
Q Consensus 216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~ 294 (368)
.+..+..+|.... ..++..|+.|++ +...+..+....+|...++++++.|+|-+|++++.|+. +++|.+....++
T Consensus 491 ~in~vVs~~~~~~---~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~ 566 (577)
T KOG0642|consen 491 QINKVVSHPTADI---TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCV 566 (577)
T ss_pred ccceEEecCCCCe---eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchhee
Confidence 4556777887763 224678999999 66777888889999999999999999999999999999 999999887777
Q ss_pred EeeEe
Q 017642 295 QEVRR 299 (368)
Q Consensus 295 ~~~~~ 299 (368)
.....
T Consensus 567 ~es~~ 571 (577)
T KOG0642|consen 567 LESTA 571 (577)
T ss_pred ecccc
Confidence 66654
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3e-12 Score=117.36 Aligned_cols=174 Identities=11% Similarity=0.083 Sum_probs=124.4
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
..|.++|...........+...+...+|+|||+.++ . +..|++||+.+++.. .+....+.+....|+|||+.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 589999975544433334788999999999999877 1 458999999888653 344455566788999999986
Q ss_pred EEEeecCCCCe--EEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC-CC--cEEEEEECCCCceeEeeEeccCcc
Q 017642 230 VLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KG--TLVRIFNTLDGTLLQEVRRGADRA 304 (368)
Q Consensus 230 ~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg--~~i~iwd~~~~~~~~~~~~~~~~~ 304 (368)
++.. +.++. |++++..+.....+..+........|+|||+.|+..+. +| . |++||+..++.. .+.. +.+
T Consensus 261 a~~~--~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~ 334 (435)
T PRK05137 261 VMSL--SQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGG 334 (435)
T ss_pred EEEE--ecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCC
Confidence 6544 34444 66667766666777777767778999999998887664 33 5 888887766544 4433 234
Q ss_pred cEEEEEEecCCCEEEEEeCC---CeEEEEEccCCC
Q 017642 305 EIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNS 336 (368)
Q Consensus 305 ~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~ 336 (368)
.+....|+|||+.|+..+.+ ..|.+||+..+.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 56778999999999876543 358888875543
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.3e-12 Score=105.30 Aligned_cols=135 Identities=17% Similarity=0.235 Sum_probs=96.2
Q ss_pred cEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
.|..++... ..+..+. ..+.|.+++|+|++..++ .++.|.+||++ ++.+..+. ...+..+.|+|+|+.+
T Consensus 40 ~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 40 ELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEE
Confidence 344444333 3444444 456799999999998765 35689999996 66666664 4567889999999987
Q ss_pred EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC------CCcEEEEEECCCCceeEeeE
Q 017642 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~------dg~~i~iwd~~~~~~~~~~~ 298 (368)
+++..|...|.+.+|+...........|. .++.++|+|||++|+++.. |.. ++||+. .|+.+.+..
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceecccc-EEEEEe-cCeEeEecc
Confidence 66544556788999988754433333343 4789999999999998874 566 999997 577665543
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=1.8e-10 Score=102.27 Aligned_cols=239 Identities=19% Similarity=0.202 Sum_probs=150.9
Q ss_pred CEEEEEEcCCCCEEEEEeC-----CeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 87 TLLHISFNQDHGCFAAGTD-----HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d-----~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
....++++|++++|.+..+ +.|..|+++.. ......... .....-..+..++++.+++.+.. .+|.|.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany----~~g~v~ 112 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANY----GGGSVS 112 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEET----TTTEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEc----cCCeEE
Confidence 4566789999999988873 35999998875 332222332 23334456777777665555432 139999
Q ss_pred EEeCCC-CcEEEE---Eec-----------CCceeEEEEeeCccEEE----eCCcEEEEEcCCCe--E--EEEEe-ccCC
Q 017642 160 IWDDHQ-SRCIGE---LSF-----------RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK--L--LHQIE-TIAN 215 (368)
Q Consensus 160 vwd~~~-~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~--~--~~~~~-~~~~ 215 (368)
++++.. +..... +.+ .....++.++|++++++ ....|++|++.... . ...+. ....
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 999987 433322 211 34578999999999877 35689999996644 3 22222 2233
Q ss_pred CeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cce---eeeeec------cCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKR---TKFIMA------HDSRIACFALTQDGQLLATSSTKGTLVR 284 (368)
Q Consensus 216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~---~~~~~~------~~~~i~~v~~sp~g~~l~s~~~dg~~i~ 284 (368)
.-..++|+|+++.++++. ..++.|.++... ... +..+.. .......|+++|||++|+++......|.
T Consensus 193 GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp SEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 456799999999877764 467888885444 222 222211 1125788999999998888775443399
Q ss_pred EEECC--CCce--eEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccC
Q 017642 285 IFNTL--DGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (368)
Q Consensus 285 iwd~~--~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~ 334 (368)
+|++. +++. +..+.. .......++++|+|++|+++. .++.|.+|+++.
T Consensus 271 vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 99993 3333 333333 233579999999999998887 567899998853
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.5e-13 Score=118.61 Aligned_cols=211 Identities=13% Similarity=0.136 Sum_probs=143.9
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYP 154 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~ 154 (368)
.....+|.+-|+|+.|+.+|.+|++|+|. .+.|||.-..+.. ..+..+|...|.+..|-| +...++++..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv~sgAgD---- 116 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIVLSGAGD---- 116 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCCeEEEeccCc----
Confidence 34567999999999999999999999955 4999997644444 333347888888888865 56677777777
Q ss_pred CCcEEEEeCCCC----------cEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe-E------E---EE
Q 017642 155 LNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK-L------L---HQ 209 (368)
Q Consensus 155 ~~~i~vwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~-~------~---~~ 209 (368)
..|+++|+... +....+. |...|..++..|++-..+ .||+|+-+|++... + . ..
T Consensus 117 -k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 117 -KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred -ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 99999998741 2334445 888999999999874333 69999999997631 1 1 11
Q ss_pred EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------------------ceeeee-eccC-----------
Q 017642 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------------------KRTKFI-MAHD----------- 258 (368)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------------------~~~~~~-~~~~----------- 258 (368)
+....-...++.++|...+ +++. |+.|-..++++... +++..+ .+|-
T Consensus 196 y~~~lielk~ltisp~rp~-~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPY-YLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred hchhhheeeeeeecCCCCc-eEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 1112224567899998876 4454 66788888866221 011111 1121
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 259 ~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (368)
..++-+.|+|+|.-|+..-.... |+++|+..++....+.
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKSPTPYF 312 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCCceeec
Confidence 12566889999985544333334 9999999887765554
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.8e-13 Score=116.87 Aligned_cols=207 Identities=14% Similarity=0.204 Sum_probs=151.3
Q ss_pred EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeC--ccEEE---eCC
Q 017642 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQ 194 (368)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~---~d~ 194 (368)
..+. +|...|.++.|+.++.++++|++| -.+.|||.-..+.+..+. |...|.++.|-|. .++++ .|.
T Consensus 44 ~eL~-GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 44 AELT-GHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhc-cccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 4454 899999999999999999999998 999999999889988887 9999999999983 45555 689
Q ss_pred cEEEEEcCCC----------eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee--------e---
Q 017642 195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--------F--- 253 (368)
Q Consensus 195 ~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--------~--- 253 (368)
.|+++|+... +....+..|...|..++..|++.+.+.. +++||+++-++....... .
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws--asEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS--ASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE--ecCCcceeeecccCCccCCccccccHHHHH
Confidence 9999999741 2344456678888889999999765553 569999999665441111 0
Q ss_pred eeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCC--------C----------ceeEeeEeccCc-----------
Q 017642 254 IMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD--------G----------TLLQEVRRGADR----------- 303 (368)
Q Consensus 254 ~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~--------~----------~~~~~~~~~~~~----------- 303 (368)
+...--...|+.++|... +|++|+.|-. .++||.+. + .++..|..+ |-
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~-hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG-HLKNSQGNLDRYI 273 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCc-cccCcccccccce
Confidence 111223567899999665 8999999998 99999431 1 123222221 11
Q ss_pred ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
..++-++|+|+|.-|++.-....|+++|+..++..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 12567889999986655544557999999887654
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=6.8e-11 Score=97.02 Aligned_cols=209 Identities=15% Similarity=0.198 Sum_probs=145.0
Q ss_pred eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC-CCcEEEEEe---cCCceeEEE
Q 017642 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELS---FRSEVRSVK 182 (368)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~-~~~~~~~~~---~~~~v~~~~ 182 (368)
.|.|||= .+.....++ .-...|.++....+.++++-- +.|+||... +-+.++.+. ......+++
T Consensus 76 kviIWDD--~k~~~i~el--~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 76 KVIIWDD--LKERCIIEL--SFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred eEEEEec--ccCcEEEEE--EeccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 3899993 333333444 345678888999998888874 789999987 445666655 344555555
Q ss_pred EeeCccEEE----eCCcEEEEEcCCCeE--EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe-EEEEe-cCcceeeee
Q 017642 183 LRRDRIIVV----LEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ-VRVEH-YASKRTKFI 254 (368)
Q Consensus 183 ~~~~~~~l~----~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~-i~i~~-~~~~~~~~~ 254 (368)
-..+..+++ .-|.|.|-|+...+. ...+..|...|.+++++.+|. ++|+ ++..|+ ||||+ .++..+..+
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vAT-aStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVAT-ASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEE-eccCcEEEEEEEcCCCcEeeee
Confidence 555566666 368999999976554 467889999999999999997 3554 566665 67755 556677776
Q ss_pred ec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe------------------------eEeccCcccEEE
Q 017642 255 MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE------------------------VRRGADRAEIYS 308 (368)
Q Consensus 255 ~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~------------------------~~~~~~~~~v~~ 308 (368)
+. ....|.+|+|+|++.+||++++.|+ |+||.++....-.. +.. ..+...-
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l--~~~~~~~ 297 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL--PQGTQCI 297 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEc--cCCCcEE
Confidence 53 3457999999999999999999999 99998875321111 111 2234555
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 309 LAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 309 l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
++|..+.+.++..+.||.-+-+.+.
T Consensus 298 ~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 298 IAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEecCCCCeEEEEEeCCcEEEEEec
Confidence 6777665666666778876555443
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=1.9e-11 Score=111.88 Aligned_cols=212 Identities=12% Similarity=0.103 Sum_probs=137.8
Q ss_pred EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (368)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (368)
|.++|.+.... +.+. .+...+....|++++..++....+. ....|++||+.+++......+.+.+.+++|+||+
T Consensus 172 l~~~d~~g~~~---~~l~-~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 172 LQVADYDGANP---QTIT-RSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred EEEEcCCCCCC---EEee-cCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 66666543222 2222 3444567778888877665543220 0157999999988765554566677789999999
Q ss_pred cEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC--eEEEEecCcceeeeeeccCc
Q 017642 188 IIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS 259 (368)
Q Consensus 188 ~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~ 259 (368)
+.++ . +..|++||+.+++.. .+..+........|+++++.+++.. ..++ .|++++..+.....+..+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s--~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS--DRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCEEEeecCCC
Confidence 8665 1 236999999877543 3333444445678999998765543 2333 56666665555555655666
Q ss_pred ceEEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC---eEEEEEcc
Q 017642 260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNLK 333 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~~ 333 (368)
.+..+.|+|+|++|+.++.++ . |.+||+.++... .+.. ........|+|||++|+..+.++ .+++.+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~---~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTD---TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccC---CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 778889999999998887765 6 899998876543 3332 12345668999999888776543 35555543
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.47 E-value=3.2e-11 Score=114.87 Aligned_cols=251 Identities=12% Similarity=0.082 Sum_probs=160.1
Q ss_pred cccccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcc---eE--EEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREI---FR--RDFERGGGIGVVEMLFRCNILALVGGGPD 150 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 150 (368)
......|...|..++.++.. .++++|+ |++|++|++...... .. .++. .....+..+...+++..++.++.|
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCC
Confidence 34456788888898887655 8999999 888999998643322 11 1221 233344444444555555555776
Q ss_pred CCCCCCcEEEEeCCCCc-------EEEEEe--cCCceeEE-EEeeC-cc-EEE---eCCcEEEEEcCCCeEEEEEe--cc
Q 017642 151 PQYPLNKVMIWDDHQSR-------CIGELS--FRSEVRSV-KLRRD-RI-IVV---LEQKIFVYNFADLKLLHQIE--TI 213 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~-------~~~~~~--~~~~v~~~-~~~~~-~~-~l~---~d~~i~vwd~~~~~~~~~~~--~~ 213 (368)
|.|++.++...+ ..+... ..+.+..| ++... +. .++ ..+.|..||++.......++ ..
T Consensus 1120 -----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1120 -----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred -----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 999999987621 111111 33444444 33332 22 233 47899999998776555543 34
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee-ee-eccCcceEEEEECCCC---CEEEEEeC--CCcEEEEE
Q 017642 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDG---QLLATSST--KGTLVRIF 286 (368)
Q Consensus 214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~-~~~~~~i~~v~~sp~g---~~l~s~~~--dg~~i~iw 286 (368)
.+.|++++.++.+..+++ |...|.+.+||..-+... .+ ..+..+|+.+..+|-. ...++++. .+. |.+|
T Consensus 1195 hG~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTW 1270 (1431)
T ss_pred ccceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeee
Confidence 567899999999985433 777899999998875433 22 2455788888887743 34444443 556 9999
Q ss_pred ECCCCceeEeeEec-----------------cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 287 NTLDGTLLQEVRRG-----------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 287 d~~~~~~~~~~~~~-----------------~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
++.+|.+...+... .+.-......+...+..+.+|+.|..|+.||...++..
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 99998777666542 01111222333344568889999999999999888766
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=1.8e-10 Score=102.28 Aligned_cols=236 Identities=14% Similarity=0.161 Sum_probs=141.9
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC-CCCCCCCCcEEEEeCCCC
Q 017642 89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDDHQS 166 (368)
Q Consensus 89 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~~~i~vwd~~~~ 166 (368)
..+.|+|||+++.+++ |+.|.++|+.+.+.. ..+. .......+++++++.+++.++ .. +.+.++|.++.
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~--~G~~~~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tl 110 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--ATIK--VGGNPRGIAVSPDGKYVYVANYEP-----GTVSVIDAETL 110 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EEEE---SSEEEEEEE--TTTEEEEEEEET-----TEEEEEETTT-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EEEe--cCCCcceEEEcCCCCEEEEEecCC-----CceeEeccccc
Confidence 3467999999998888 888999999887755 4442 233456677777776555443 33 89999999999
Q ss_pred cEEEEEec--------CCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEE--EEEeccCCCeeEEEEecCCCeEEEE
Q 017642 167 RCIGELSF--------RSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 167 ~~~~~~~~--------~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
+.++.+.. ...+.++..++.+. +++ ..+.|.+.|..+.+.+ ..+. .........|.+++++++++
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEE
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeec
Confidence 99998862 23567887888777 444 2478888898765433 2333 23344567899999886665
Q ss_pred eecCCCCeEEEEecCc-c-------------------------------------------------------eeeeeec
Q 017642 233 CPGLQKGQVRVEHYAS-K-------------------------------------------------------RTKFIMA 256 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~~-~-------------------------------------------------------~~~~~~~ 256 (368)
..+ +..|.+.+... + .++.+..
T Consensus 190 ~~~--sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 190 ANG--SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EGG--GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ccc--cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 422 23444422221 1 1111222
Q ss_pred cCcceEEEEECCCCCEEEEE----eCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe--CCCeEEEE
Q 017642 257 HDSRIACFALTQDGQLLATS----STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVF 330 (368)
Q Consensus 257 ~~~~i~~v~~sp~g~~l~s~----~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~dg~i~iw 330 (368)
...+ ..+..+|+++++.+. ...+. |.|+|.++.+.+..+.... ...+..+.|++||+.+..+. .++.|.||
T Consensus 268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 268 QGGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp SSSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred CCCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 2222 456779999999888 34466 9999999998887776432 23489999999999766554 34479999
Q ss_pred EccCCCCCC
Q 017642 331 NLKVNSGSA 339 (368)
Q Consensus 331 d~~~~~~~~ 339 (368)
|..+.+...
T Consensus 345 D~~Tl~~~~ 353 (369)
T PF02239_consen 345 DAKTLKEKK 353 (369)
T ss_dssp ETTTTEEEE
T ss_pred ECCCcEEEE
Confidence 999887654
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=9.8e-13 Score=113.35 Aligned_cols=246 Identities=13% Similarity=0.106 Sum_probs=163.8
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLN 156 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~ 156 (368)
....|.+-|..|.|+..|..|++|+ |..|.+||+........ +..+|...+....|-| +..-+++++.| |
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~d-----g 209 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRD-----G 209 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceecccc-----C
Confidence 4567999999999999999999999 66799999988776644 3336666666655544 44566777776 8
Q ss_pred cEEEEeCC-CCcEE---EEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeE----------------------
Q 017642 157 KVMIWDDH-QSRCI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL---------------------- 206 (368)
Q Consensus 157 ~i~vwd~~-~~~~~---~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~---------------------- 206 (368)
.+++=.+. ++.+. +..+|.+.|..++.-|+..+-+ .|+.+.-+|++.+..
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 88776643 23222 1122666666666555432222 233333333322110
Q ss_pred ---------------------------------EEEE------eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642 207 ---------------------------------LHQI------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (368)
Q Consensus 207 ---------------------------------~~~~------~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~ 247 (368)
+..+ ......|++++|+.++..++.++ .|-.|+++...
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~ 366 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKS 366 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccc
Confidence 0111 01123467888887777655443 57777775433
Q ss_pred cc-------------eeee-eeccCc--ceEEEEE-CCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 248 SK-------------RTKF-IMAHDS--RIACFAL-TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 248 ~~-------------~~~~-~~~~~~--~i~~v~~-sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
.. .++. +++|.. .|..+-| -|...|+++|+.-|. |.||+-.+++.++.+.+.. .-|+||.
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh-IFiW~K~t~eii~~MegDr--~VVNCLE 443 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH-IFIWDKKTGEIIRFMEGDR--HVVNCLE 443 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce-EEEEecchhHHHHHhhccc--ceEeccC
Confidence 21 1222 677764 3666655 567789999999999 9999999999998888743 4899999
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
-+|--.+||+.+-|..|+||--.+.+..
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred CCCCCchhhccCCccceeeecCCccccc
Confidence 9999999999999999999987554443
No 232
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=7.5e-10 Score=92.87 Aligned_cols=248 Identities=15% Similarity=0.135 Sum_probs=165.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
..+.+.++-|+|+|++++|.++. +++|.-|.++.. ...+..... .....-..++.+.++.+++++.. ..
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY----~~ 110 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANY----HS 110 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEc----cC
Confidence 35566788999999999998776 344888888764 332222211 11222256777777766666543 34
Q ss_pred CcEEEEeCCC-Cc---EEEEEecCCc----------eeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEe---ccC
Q 017642 156 NKVMIWDDHQ-SR---CIGELSFRSE----------VRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIE---TIA 214 (368)
Q Consensus 156 ~~i~vwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~---~~~ 214 (368)
|.|.++-++. |. .+..+.|.+. +....+.|++++++ .-.+|.+|++..|++...-. ...
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 8999999865 43 3344556665 88999999999888 24589999999876532211 223
Q ss_pred CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeec---------cCcceEEEEECCCCCEEEEEeCCCcEE
Q 017642 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMA---------HDSRIACFALTQDGQLLATSSTKGTLV 283 (368)
Q Consensus 215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~---------~~~~i~~v~~sp~g~~l~s~~~dg~~i 283 (368)
..-+.+.|+|+++..++++ .-+++|.+|..+. ..+..++. .......|.+++||++|.++...-..|
T Consensus 191 ~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 3446799999999877765 4688999976665 33333322 233567899999999998887643338
Q ss_pred EEEECCCC-ceeEeeE-eccCcccEEEEEEecCCCEEEEEeCC-CeEEEEEccCCC
Q 017642 284 RIFNTLDG-TLLQEVR-RGADRAEIYSLAFSSNAQWLAVSSDK-GTVHVFNLKVNS 336 (368)
Q Consensus 284 ~iwd~~~~-~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d-g~i~iwd~~~~~ 336 (368)
-+|.+... ..+..+. ...+........|+++|++|+++..+ ..|.+|.++...
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 88877643 2222222 11133347889999999999998854 469999886543
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=3.3e-10 Score=100.62 Aligned_cols=229 Identities=15% Similarity=0.176 Sum_probs=139.3
Q ss_pred CCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec
Q 017642 97 HGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (368)
Q Consensus 97 g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~ 174 (368)
++++++.. ++.|.|.|.++.+.. ..+. .+......+.+++++.++...+.| |.|.++|+.+++.+.++..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~--~~i~-~~~~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVV--ARIP-TGGAPHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEE--EEEE--STTEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-
T ss_pred ccEEEEEecCCCEEEEEECCCCeEE--EEEc-CCCCceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEec
Confidence 34554444 677999998776655 3443 222224556788877655555666 9999999999999999998
Q ss_pred CCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccC-------CCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642 175 RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA-------NPKGLCAVSQGVGSLVLVCPGLQKGQVRV 243 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i 243 (368)
.....++++++||++++ ..+.+.++|.++.+.++.+.... ..+..+..++....+++.. -+.+.|.+
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~v 154 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWV 154 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEE
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEE
Confidence 88889999999999888 58999999999999998886432 2455666677776544443 23467766
Q ss_pred EecC-cceee-eeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEec--------------------
Q 017642 244 EHYA-SKRTK-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRG-------------------- 300 (368)
Q Consensus 244 ~~~~-~~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~-------------------- 300 (368)
-+.. ...+. .............|+|+++|++.+. .+.. |-++|..+++.+..+..+
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred EEeccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 3332 22222 2223344567889999999876654 3445 888887766544332110
Q ss_pred ---------------------------------cCcccEEEEEEecCCCEEEEE----eCCCeEEEEEccCCCC
Q 017642 301 ---------------------------------ADRAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNSG 337 (368)
Q Consensus 301 ---------------------------------~~~~~v~~l~~sp~~~~l~s~----s~dg~i~iwd~~~~~~ 337 (368)
...++ .-+..+|+++++.+. ...+.|.|+|.++.+.
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 01112 445668999999887 4557899999988744
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=2.5e-11 Score=111.17 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=124.3
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
..|.++|...+.......+...+...+|+|||+.++ . ...|++||+.+++.... ..+...+..++|+||++.+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEE
Confidence 568899976444444344666789999999999888 1 24799999988865433 3344556678999999986
Q ss_pred EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC-C--cEEEEEECCCCceeEeeEeccCcccE
Q 017642 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
++......+..|++++........+..+........|+|||+.|+..+.. + . |.++|+.+++.. .+.. +...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCCCc
Confidence 65543222345777777666666666665556678999999988766543 2 4 788888776644 3433 33457
Q ss_pred EEEEEecCCCEEEEEeCCC---eEEEEEccCCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSG 337 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~ 337 (368)
..+.|+|+|++|+.++.++ .|.+||+.++..
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 7889999999998887765 789999877543
No 235
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=2.2e-11 Score=100.82 Aligned_cols=245 Identities=13% Similarity=0.214 Sum_probs=155.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-c--eEEEcccCC------------ceeEEEEEEe--CCeEEEE
Q 017642 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-I--FRRDFERGG------------GIGVVEMLFR--CNILALV 145 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~--~~~~~~~~~------------~~~~~~~~~~--~~~~~~~ 145 (368)
..+-|.++.|...|.+||+|+ +|.|.+|.-+.... . ....+. .| ...+..+.|. .+...+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 345789999999999999999 55588886543221 1 111121 11 1223344443 3443444
Q ss_pred ecCCCCCCCCCcEEEEeCCCCc-----------------------------------EEEEEe--cCCceeEEEEeeCcc
Q 017642 146 GGGPDPQYPLNKVMIWDDHQSR-----------------------------------CIGELS--FRSEVRSVKLRRDRI 188 (368)
Q Consensus 146 s~~~d~~~~~~~i~vwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~~~~~~ 188 (368)
....| .+|++|-+.... +.+.+. |...|.++.++.|..
T Consensus 103 lstNd-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 103 LSTND-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred EecCC-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 44444 899999765321 122233 677899999999988
Q ss_pred EEE--eCCcEEEEEcCCC-eEE--EEEecc-----CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce-----eee
Q 017642 189 IVV--LEQKIFVYNFADL-KLL--HQIETI-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKF 253 (368)
Q Consensus 189 ~l~--~d~~i~vwd~~~~-~~~--~~~~~~-----~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-----~~~ 253 (368)
.++ .|=.|.+|+++-- +.. .-++.+ ..-|++..|+|..-.++ ++ .+..|.|++-+..... .+.
T Consensus 178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f-~Y-SSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF-VY-SSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE-EE-ecCCCcEEEeechhhhhhcchhhh
Confidence 777 5679999998532 221 122221 23467788999876644 45 3568999994443211 111
Q ss_pred ee------------ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC-CCceeEeeEeccC----------ccc---EE
Q 017642 254 IM------------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGAD----------RAE---IY 307 (368)
Q Consensus 254 ~~------------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~----------~~~---v~ 307 (368)
+. .--..|..+.|+.+|+||++-..- + |+|||+. ..+++.++..+.+ ... -.
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 11 112357889999999999876644 4 9999994 5666666665211 112 24
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.++|+-++.++++|+..+..++|++..+...
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCCCcce
Confidence 5789999999999999999999997766544
No 236
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.42 E-value=5.3e-12 Score=100.82 Aligned_cols=208 Identities=11% Similarity=0.131 Sum_probs=146.0
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE--eCCcEEEEEcC
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA 202 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~ 202 (368)
.+...+.++.|..+... .++..- |.|++|++.+......+. +...|+.+..-|++.+.. .|..+.+|++.
T Consensus 12 p~~~~v~s~~fqa~~rL-~sg~~~-----G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERL-MSGLSV-----GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred cccchheehhhccchhh-hccccc-----ceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence 67777888888887774 444443 999999999988777776 677888998888876666 68889999885
Q ss_pred CCeEE--------------EEEe---------------------------------------ccCCCeeEEEEe-cCCCe
Q 017642 203 DLKLL--------------HQIE---------------------------------------TIANPKGLCAVS-QGVGS 228 (368)
Q Consensus 203 ~~~~~--------------~~~~---------------------------------------~~~~~v~~~~~~-~~~~~ 228 (368)
-+..+ ..+. ...+.+.+..+. .++..
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 42110 0000 001112222221 23445
Q ss_pred EEEEeecCCCCeEEEEecCcc-----------eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC--Cce--
Q 017642 229 LVLVCPGLQKGQVRVEHYASK-----------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--GTL-- 293 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i~~~~~~-----------~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~--~~~-- 293 (368)
++++ .|.++|.+.+|+.+.+ .......|..+|.++.+.+.-..=++|+.+.. +..|++.. +.+
T Consensus 166 ~lll-aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 166 FLLL-AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTGSLQI 243 (323)
T ss_pred EEEE-EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccCcccc
Confidence 5555 4999999999998873 33345679999999999876555677787777 88998763 222
Q ss_pred eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 294 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
..+... ..-.|..+.+-||++.+|+++.|+.||||+.++.++.....-+
T Consensus 244 ~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 244 RKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred cceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence 122222 2236889999999999999999999999999999888766555
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=4.4e-11 Score=109.63 Aligned_cols=218 Identities=13% Similarity=0.083 Sum_probs=133.2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEe-cCCCCCCCCC
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGT-D-H--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG-GGPDPQYPLN 156 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~-d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~d~~~~~~ 156 (368)
..+...+.+..|+|||+.|+..+ + + .|.+||+.+++......+ ........|++++..++. ...+ ...
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~----~g~~~~~~wSPDG~~La~~~~~~---g~~ 286 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF----PGINGAPRFSPDGKKLALVLSKD---GQP 286 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC----CCCcCCeeECCCCCEEEEEEeCC---CCe
Confidence 34556788899999999998776 3 2 288888876554322222 122235678887765443 2332 013
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
.|+++|+.+++......+........|+||++.++ . + ..|+++|+.+++..+.. .........+|+|||+.++
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 287 EIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred EEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEE
Confidence 58888988876544333555677889999998877 2 2 35778888777654322 1222234468999999765
Q ss_pred EEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC-Cc-EEEEEECCCCceeEeeEeccCcccE
Q 017642 231 LVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 231 l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
++. ..++...| .+........+.... ......|+|||++|+..+.+ |. .+.+++. +|.....+.. +.+.+
T Consensus 366 ~~~--~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~--~~g~~ 439 (448)
T PRK04792 366 MVN--RTNGKFNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA--GQGEV 439 (448)
T ss_pred EEE--ecCCceEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC--CCCCc
Confidence 543 33454444 444444444443321 22345799999977765544 32 2667776 5666666654 34567
Q ss_pred EEEEEec
Q 017642 307 YSLAFSS 313 (368)
Q Consensus 307 ~~l~~sp 313 (368)
...+|+|
T Consensus 440 ~~p~Wsp 446 (448)
T PRK04792 440 KSPAWSP 446 (448)
T ss_pred CCCccCC
Confidence 7788887
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.7e-10 Score=104.98 Aligned_cols=201 Identities=11% Similarity=0.098 Sum_probs=127.2
Q ss_pred CceeEEEEEEeCCeE--EE--EecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--CC--cE-
Q 017642 128 GGIGVVEMLFRCNIL--AL--VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--EQ--KI- 196 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~--~~--~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d~--~i- 196 (368)
.......-.|+|++. .+ ++.... ...|.+.++..++........+.....+|+|||+.++ . +| .+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g----~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLG----VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCC----CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 334455667888853 23 332211 1468888998887655544666667789999998887 3 22 34
Q ss_pred -EEEEcCCC---eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe--cC--cceeeeeeccCcceEEEEECC
Q 017642 197 -FVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH--YA--SKRTKFIMAHDSRIACFALTQ 268 (368)
Q Consensus 197 -~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~--~~~~~~~~~~~~~i~~v~~sp 268 (368)
.+|++..+ +..+............+|+|||+.++++. ..+|...+|. .. +.....+..+...+....|+|
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 44677652 33333322223345689999999866543 3456555543 22 233444555555678899999
Q ss_pred CCCEEEEEeCC---CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC---CCeEEEEEccCCCCC
Q 017642 269 DGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKVNSGS 338 (368)
Q Consensus 269 ~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~ 338 (368)
||+.|+..+.+ .. |.+||+.+++.. .+.. ....+....|+|||+.|+.... ...|++||+..++..
T Consensus 337 DG~~Laf~~~~~g~~~-I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQ-ICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCCEEEEEEcCCCCcE-EEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 99988876543 35 999999888765 3332 2335678999999998875432 356888998776543
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.7e-10 Score=105.90 Aligned_cols=213 Identities=12% Similarity=0.074 Sum_probs=132.8
Q ss_pred EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (368)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (368)
|.++|.+..... ... .+...+....|++++..++..+.+. ....|.+||+.+++........+.+....|+|||
T Consensus 181 l~~~d~~g~~~~--~l~--~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAV--TLL--QSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCce--EEe--cCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC
Confidence 555555433221 222 3455677888888876655433210 0147999999988765444455566678999999
Q ss_pred cEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC--eEEEEecCcceeeeeeccCc
Q 017642 188 IIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS 259 (368)
Q Consensus 188 ~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~ 259 (368)
+.++ .++ .|++||+.+++.. .+..+........|+|||+.+++.. ..+| .|++++........+.....
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s--~~~g~~~iy~~d~~~g~~~~lt~~~~ 331 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS--DRGGKPQIYKVNVNGGRAERVTFVGN 331 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECCCCCEEEeecCCC
Confidence 8776 233 6999999887654 3444444556688999999866543 2334 45555554444444332223
Q ss_pred ceEEEEECCCCCEEEEEeCC-C--cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC---CeEEEEEcc
Q 017642 260 RIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK 333 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~ 333 (368)
......|+|||++|+..+.+ + . |.+||+.+++.. .+... .......|+|||++++..+.+ ..|+++++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 34567899999988876643 3 4 888999887653 33321 122356899999998876543 346677774
Q ss_pred C
Q 017642 334 V 334 (368)
Q Consensus 334 ~ 334 (368)
.
T Consensus 407 g 407 (430)
T PRK00178 407 G 407 (430)
T ss_pred C
Confidence 3
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.1e-10 Score=105.18 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=122.0
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCC--cEEEEE
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQ--KIFVYN 200 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~--~i~vwd 200 (368)
.....+....|+|++..++....+. ....|++||+.+++........+.....+|+|||+.++ .++ .|+++|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 3455667788888876555432210 01469999998887544333444556789999999776 245 488889
Q ss_pred cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe--EEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC
Q 017642 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (368)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~ 278 (368)
+.+++.. .+..+.......+|+||++.+++.. ..++. |.+++........+..........+|+|||++|+..+.
T Consensus 293 l~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s--~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 293 IATKALT-RITRHRAIDTEPSWHPDGKSLIFTS--ERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred CCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 9877653 3433444556789999999865543 33444 44445544444444322233445789999998877655
Q ss_pred C-Cc-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC-CC--eEEEEEcc
Q 017642 279 K-GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVHVFNLK 333 (368)
Q Consensus 279 d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~iwd~~ 333 (368)
+ +. .|.++|+.+++.. .+... .......|+|||+.|+..+. ++ .|++++++
T Consensus 370 ~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred cCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 3 32 1566788777653 33321 12234589999998876553 33 36777764
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1e-10 Score=107.43 Aligned_cols=219 Identities=12% Similarity=0.040 Sum_probs=134.9
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEE-ecCCCCCCCC
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-D-H--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPL 155 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~ 155 (368)
...+...+...+|+|||+.|+..+ + + .|.+|++++++...... .........|++++..++ +...+ .+
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~----~~g~~~~~~~SpDG~~la~~~~~~---g~ 266 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN----FEGLNGAPAWSPDGSKLAFVLSKD---GN 266 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC----CCCCcCCeEECCCCCEEEEEEccC---CC
Confidence 345667889999999999998766 3 2 38888987665432222 222334577888775444 33222 01
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
..|++||+.+++......+........|+|||+.++ . + ..|+++|+.+++..+.. ..........|+|+|+.+
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTL 345 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence 479999998887554333555667789999998776 2 2 36888898877644332 122233457899999986
Q ss_pred EEEeecCCCC--eEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC-c-EEEEEECCCCceeEeeEeccCccc
Q 017642 230 VLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAE 305 (368)
Q Consensus 230 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~ 305 (368)
++.. ..++ .|.+++........+.. ........|+|||+.|+..+.++ . .|.++++. +.....+.. +.+.
T Consensus 346 ~~~~--~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~ 419 (430)
T PRK00178 346 VMVH--RQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGE 419 (430)
T ss_pred EEEE--ccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCC
Confidence 5543 2334 45556655544444432 22233568999999887766542 2 26777764 444444543 3456
Q ss_pred EEEEEEec
Q 017642 306 IYSLAFSS 313 (368)
Q Consensus 306 v~~l~~sp 313 (368)
+...+|+|
T Consensus 420 ~~~p~ws~ 427 (430)
T PRK00178 420 VREPSWSP 427 (430)
T ss_pred cCCCccCC
Confidence 67777876
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.1e-10 Score=102.50 Aligned_cols=224 Identities=8% Similarity=-0.078 Sum_probs=131.6
Q ss_pred CCCCEEEEEEcCCCCEEE---EEe-CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 84 PPPTLLHISFNQDHGCFA---AGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~---~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
....+.+-+|+|||+.++ +.. ++. |.+.+++.++......+ ........|+|++..++.........+..
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~----~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL----QGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC----CCCccceEECCCCCEEEEEECCCCCccee
Confidence 445567779999998532 333 333 77778776655433333 22334567888775544322110011123
Q ss_pred EEEEeCCCC---cEEEEEec-CCceeEEEEeeCccEEE--e--CCc--EEEEEcCC-CeEEEEEeccCCCeeEEEEecCC
Q 017642 158 VMIWDDHQS---RCIGELSF-RSEVRSVKLRRDRIIVV--L--EQK--IFVYNFAD-LKLLHQIETIANPKGLCAVSQGV 226 (368)
Q Consensus 158 i~vwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~--~--d~~--i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 226 (368)
+.+|++..+ +....... .......+|+|||+.++ . +|. |+++++.. +.....+......+....|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444776653 33333322 23456789999999777 2 454 55555532 23344444444556778999999
Q ss_pred CeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCceeEeeEeccCc
Q 017642 227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADR 303 (368)
Q Consensus 227 ~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~ 303 (368)
+.++++........|.+++..+.....+......+....|+|||++|+.... ... |.+||+..++...... ..
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~---~~ 414 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI---GS 414 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec---CC
Confidence 9865543211234677777777666666544456778999999997775433 235 8899988777554333 34
Q ss_pred ccEEEEEEecCC
Q 017642 304 AEIYSLAFSSNA 315 (368)
Q Consensus 304 ~~v~~l~~sp~~ 315 (368)
+.+...+|+|-.
T Consensus 415 g~~~~p~Ws~~~ 426 (428)
T PRK01029 415 GEKRFPSWGAFP 426 (428)
T ss_pred CcccCceecCCC
Confidence 556778888743
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.1e-10 Score=102.83 Aligned_cols=208 Identities=16% Similarity=0.209 Sum_probs=144.7
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-----------------------------c---
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-----------------------------F--- 174 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-----------------------------~--- 174 (368)
.++.....+..++++.++.+.+.- .-.|++||+..-....+-. |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~Y----KP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTY----KPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEeccc----CCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 466667788888888776654431 1579999987532211110 0
Q ss_pred --------CCceeEEEEee-C-ccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642 175 --------RSEVRSVKLRR-D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV 243 (368)
Q Consensus 175 --------~~~v~~~~~~~-~-~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i 243 (368)
...-.+++++. . ..+++ ....|+-++++.|+-+..+....+.+++|.+++... ++++ |..+|.|..
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-Gt~~g~VEf 201 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-GTEDGVVEF 201 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-cccCceEEE
Confidence 01112233222 1 12233 566899999999999988888888999999988765 4565 889999999
Q ss_pred EecCcceee-ee------eccCc-----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642 244 EHYASKRTK-FI------MAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (368)
Q Consensus 244 ~~~~~~~~~-~~------~~~~~-----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 311 (368)
|+...+... .+ ..|.+ .|+++.|+.+|-.+++|..+|. |.|||++..+++..- .+...-+|..+.|
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~k-dh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVK-DHGYELPIKKLDW 279 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeec-ccCCccceeeecc
Confidence 997764322 22 22333 3999999999999999999999 999999999988544 3335668999999
Q ss_pred ecC--CCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642 312 SSN--AQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (368)
Q Consensus 312 sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 344 (368)
.+. +..|++. +...++|||-.+++.....+..
T Consensus 280 ~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 280 QDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred cccCCCceEEec-chHHhhhcccccCCceeecccc
Confidence 775 3455544 5667999999999987655543
No 244
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.2e-10 Score=98.21 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=120.1
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC------CcEEEEEe--cCCceeEEEEeeCccEEE---eCCc
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------SRCIGELS--FRSEVRSVKLRRDRIIVV---LEQK 195 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~------~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~ 195 (368)
+|...|.++.|+.++.++++|++| ..+++|++.. .+++.... |...|.+++|.-.++++. .+++
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD-----~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDD-----MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhccccceeeeccCCeEEeecCCc-----ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 788889999999999999999998 9999999753 46666665 678999999999888888 5889
Q ss_pred EEEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce----eeeeeccCcceEEEEECCC
Q 017642 196 IFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD 269 (368)
Q Consensus 196 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~v~~sp~ 269 (368)
|.+.|+++.+.+..+.. ..+.|..+..+|-.+.+++ .+.++.|.+|+....+ .............+.|+|.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~---~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV---VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEE---EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 99999999988877742 2347888999998664332 3478999998866533 1122234455778889996
Q ss_pred CC-EEEEEeCCCcEEEEEECC
Q 017642 270 GQ-LLATSSTKGTLVRIFNTL 289 (368)
Q Consensus 270 g~-~l~s~~~dg~~i~iwd~~ 289 (368)
.. +|++.+..+. +-+||++
T Consensus 206 ~P~Li~~~~~~~G-~~~~D~R 225 (609)
T KOG4227|consen 206 TPALILVNSETGG-PNVFDRR 225 (609)
T ss_pred CceeEEeccccCC-CCceeec
Confidence 54 7888888888 9999985
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.4e-10 Score=100.26 Aligned_cols=189 Identities=12% Similarity=0.207 Sum_probs=141.1
Q ss_pred eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe----cCCceeEEEEe------e--------------CccEEE---eC
Q 017642 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLR------R--------------DRIIVV---LE 193 (368)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~------~--------------~~~~l~---~d 193 (368)
..+++....| |.+++||...++...+|. ..+...+..|. | +...++ ..
T Consensus 5 ~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 5 LDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred hheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 3455555555 999999999998888775 23444444443 1 112233 47
Q ss_pred CcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCCC
Q 017642 194 QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDG 270 (368)
Q Consensus 194 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~g 270 (368)
|.|.+|++..|+....+. .|.+.|.++.++.+-.. +++++.|+.+..|+.... .++.+......+.+++.+|||
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c---iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC---IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc---eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 899999999999888775 57788888877766653 335667888888877664 445566777789999999999
Q ss_pred CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC-----CCEEEEE-eCCCeEEEEEccCCCCCCCCC
Q 017642 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQWLAVS-SDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 271 ~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s~-s~dg~i~iwd~~~~~~~~~~~ 342 (368)
+.|++++.. |++||+++++.+..|.+ |.++|.++.|--+ |.++.++ ..+.-|.+|-++.....+...
T Consensus 157 ~~l~~as~~---ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~ 229 (541)
T KOG4547|consen 157 KILLTASRQ---IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLS 229 (541)
T ss_pred CEEEeccce---EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhh
Confidence 999999854 99999999999999998 8999999999877 6666654 456668999888755544433
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=5.7e-09 Score=90.82 Aligned_cols=236 Identities=11% Similarity=0.037 Sum_probs=148.5
Q ss_pred EcCCCCEEEEEeC-----------CeEEEEEecCCCcceEEEcccC----CceeEEEEEEeCCeEEEEecC-C-CCCCCC
Q 017642 93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGG-P-DPQYPL 155 (368)
Q Consensus 93 ~s~~g~~l~~~~d-----------~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~-~-d~~~~~ 155 (368)
++|||+.|.++.- +.|.+||..+.+......+... ....-..+.+++++..++... . +
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~----- 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS----- 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC-----
Confidence 8999998766543 5599999998887755444211 112233567777776555333 2 4
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCC-CeEE-EE---EeccCCCeeE-EEEec-CCC
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLL-HQ---IETIANPKGL-CAVSQ-GVG 227 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~-~~~~-~~---~~~~~~~v~~-~~~~~-~~~ 227 (368)
+.|.++|+.+++.+.++...+...-...+++...+. .||......+.+ |+.. .. +.....++.. -.+.+ ++.
T Consensus 128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 899999999999999998655444444544444433 566655544432 2211 11 1110111100 13455 676
Q ss_pred eEEEEeecCCCCeEEEEecCc------ceeeeeec-------cCcceEEEEECCCCCEEEEEeC----------CCcEEE
Q 017642 228 SLVLVCPGLQKGQVRVEHYAS------KRTKFIMA-------HDSRIACFALTQDGQLLATSST----------KGTLVR 284 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~------~~~~~~~~-------~~~~i~~v~~sp~g~~l~s~~~----------dg~~i~ 284 (368)
.+++.+ .|.|.+-+... .....+.. ..+.+.-+++++++++++.... .+. |.
T Consensus 208 ~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ 282 (352)
T TIGR02658 208 LVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LF 282 (352)
T ss_pred EEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EE
Confidence 544432 49999854322 11111111 2233455999999998777431 135 99
Q ss_pred EEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCCC
Q 017642 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSARS 341 (368)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 341 (368)
++|..+++.+..+..+ ..+..|+++||++ +|++.. .++.|.++|+.+++.....
T Consensus 283 ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999999998863 4789999999999 777666 5788999999998876543
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.7e-10 Score=97.17 Aligned_cols=220 Identities=14% Similarity=0.159 Sum_probs=148.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCc--ceEEEcccCCceeEEEEEEeCCeEE-EEecCCCCCCCCCcEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLNKVM 159 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~d~~~~~~~i~ 159 (368)
.....|-.++.. ||.++++-+++.+.+|..+.+.. .....+ .....+..+.-.+.... +++|+.. .-+.++
T Consensus 103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke---~~n~lk 176 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKE---NINELK 176 (412)
T ss_pred cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchh---ccccee
Confidence 344455555543 56555555577899999874431 111222 22234444544443333 3334432 014699
Q ss_pred EEeCCCCcEEEEEe----------cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEe
Q 017642 160 IWDDHQSRCIGELS----------FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVS 223 (368)
Q Consensus 160 vwd~~~~~~~~~~~----------~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~ 223 (368)
+||++..+.+.+-+ ..-.++++.|-+. ...++ .-+.+++||.+.+ +++..+.-...++.++...
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence 99999886655433 2335677788776 55555 4689999999765 5677777778899999999
Q ss_pred cCCCeEEEEeecCCCCeEEEEecCc-ceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642 224 QGVGSLVLVCPGLQKGQVRVEHYAS-KRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (368)
Q Consensus 224 ~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (368)
|+++.++ +|..-|.+..++.+. +.... +.+-.+.|++|..+|.+++|++++-|+. |||+|+.+.+++.....
T Consensus 257 p~gn~Iy---~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv-- 330 (412)
T KOG3881|consen 257 PSGNFIY---TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV-- 330 (412)
T ss_pred CCCcEEE---EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh--
Confidence 9998644 366778888865555 43333 7788899999999999999999999999 99999999777766554
Q ss_pred CcccEEEEEEecCC
Q 017642 302 DRAEIYSLAFSSNA 315 (368)
Q Consensus 302 ~~~~v~~l~~sp~~ 315 (368)
...+++|.+.++-
T Consensus 331 -Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 331 -KSRLTFILLRDDV 343 (412)
T ss_pred -hccccEEEecCCc
Confidence 3457777776543
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=8.7e-10 Score=91.08 Aligned_cols=233 Identities=11% Similarity=0.093 Sum_probs=151.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC--C-------
Q 017642 84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP--Q------- 152 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~------- 152 (368)
-..++.+++|||||+.+...+ +-.|.||.+.+......... .+ .+..++|++++.+.+-..+.- .
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~--~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KT--NVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--cc--CceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 355788999999998776655 77799999988776654332 22 335566777766554433310 0
Q ss_pred --------------------C--CCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe--
Q 017642 153 --------------------Y--PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-- 205 (368)
Q Consensus 153 --------------------~--~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~-- 205 (368)
+ .++.+.+||.--.-.+..+...-.+..++|+|.+++++ .|+.+++.+--+-+
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 0 23457777744333444555567899999999998888 68877775432211
Q ss_pred ----------------------------------------------------------EEEEEe------ccCCCeeEEE
Q 017642 206 ----------------------------------------------------------LLHQIE------TIANPKGLCA 221 (368)
Q Consensus 206 ----------------------------------------------------------~~~~~~------~~~~~v~~~~ 221 (368)
.++.++ .....+..++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 011111 1112345688
Q ss_pred EecCCCeEEEEee-cCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642 222 VSQGVGSLVLVCP-GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (368)
Q Consensus 222 ~~~~~~~~~l~~~-g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (368)
|++|..+ +++- ...-..+-+|+.....+..+-....+|....|+|....|+.+..... +++|...-...+ ....
T Consensus 326 fs~Ds~y--~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr-LY~W~psg~~~V-~vP~- 400 (447)
T KOG4497|consen 326 FSCDSTY--AATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR-LYFWAPSGPRVV-GVPK- 400 (447)
T ss_pred ecCCceE--EeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce-EEEEcCCCceEE-ecCC-
Confidence 9998864 3331 12233455577777666666566779999999999888888887777 999986543333 3333
Q ss_pred cCcccEEEEEEecCCCEEEEEeCCCe
Q 017642 301 ADRAEIYSLAFSSNAQWLAVSSDKGT 326 (368)
Q Consensus 301 ~~~~~v~~l~~sp~~~~l~s~s~dg~ 326 (368)
..-.|..+.|.-+|..++-.+.|..
T Consensus 401 -~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 401 -KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred -CCceeeeEEecCCCcEEEEEcCCce
Confidence 3457999999999999999988864
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=1.7e-08 Score=89.70 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=136.5
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEE--Ecc---------cCCceeEEEEEEeCCeEEEEe--cCC
Q 017642 85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRR--DFE---------RGGGIGVVEMLFRCNILALVG--GGP 149 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~s--~~~ 149 (368)
......++++|++++|+++. ++.|.+++++........ .+. ........++.++|++.+++. -+.
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 34556789999999999987 666999999875332221 111 023345667888887654443 333
Q ss_pred CCCCCCCcEEEEeCCCCc--E--EEEEe--cCCceeEEEEeeCccEEE----eCCcEEEEEcC--CCe--EEEEEecc--
Q 017642 150 DPQYPLNKVMIWDDHQSR--C--IGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA--DLK--LLHQIETI-- 213 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~--~--~~~~~--~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~--~~~--~~~~~~~~-- 213 (368)
..|.+|++.... . ...+. ....-+.+.|+|+++++. .++.|.++++. +++ .++.+...
T Consensus 166 ------D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 166 ------DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp ------TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred ------CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 589999987654 3 22333 567789999999998776 48899999997 443 23333221
Q ss_pred ----CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--c---ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642 214 ----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--S---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (368)
Q Consensus 214 ----~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~---~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~ 284 (368)
......+.++|||+.+++... ..+.|.++..+ . ..+..+.......+.++++|+|++|+++..+...|.
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 113567999999998776542 36677775552 2 223333334445799999999999998886554499
Q ss_pred EEEC--CCCceeEeeEeccCcccEEEEEE
Q 017642 285 IFNT--LDGTLLQEVRRGADRAEIYSLAF 311 (368)
Q Consensus 285 iwd~--~~~~~~~~~~~~~~~~~v~~l~~ 311 (368)
+|++ .+|.+...-... .-....||.|
T Consensus 318 vf~~d~~tG~l~~~~~~~-~~~~p~ci~f 345 (345)
T PF10282_consen 318 VFDIDPDTGKLTPVGSSV-PIPSPVCIVF 345 (345)
T ss_dssp EEEEETTTTEEEEEEEEE-ESSSEEEEEE
T ss_pred EEEEeCCCCcEEEecccc-cCCCCEEEeC
Confidence 9976 466654333211 2234567665
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=1.7e-10 Score=108.27 Aligned_cols=191 Identities=12% Similarity=0.137 Sum_probs=144.5
Q ss_pred CcEEEEeCCCCcEEEEEecCCcee-----EEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVR-----SVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (368)
+.+.+||...+.....+.+..... -+.++++..+++ .-+.|.+|+...-+....+.+|.+.+..+.++-||.
T Consensus 109 ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~ 188 (967)
T KOG0974|consen 109 NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR 188 (967)
T ss_pred ceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc
Confidence 789999988887777776544332 223445555665 468999999863333335789999999999999998
Q ss_pred eEEEEeecCCCCeEEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642 228 SLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (368)
. ++ +.++|..+++|........ ...+|...|..+.|.|+ .++++++|-+ .++|+. +++.+..+..+ ....
T Consensus 189 ~--i~-s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~~~l~~y~~h-~g~~ 260 (967)
T KOG0974|consen 189 Y--IA-SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NGTQLEVYDEH-SGKG 260 (967)
T ss_pred E--EE-EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-ccceehhhhhh-hhcc
Confidence 5 33 3569999999998875443 46689999999999988 8999999999 999974 55666677764 3457
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCCCCCCccCC
Q 017642 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (368)
Q Consensus 306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (368)
|+.++..++...+++++.|+.+++|++......-..+..+...+..+..
T Consensus 261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~~~~~~~s~~kl~ 309 (967)
T KOG0974|consen 261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVEQSSLLSSIVKLK 309 (967)
T ss_pred eeEEEEcCCceEEEeeccCcchhhhhhhccccccceeeeeeecchhhhc
Confidence 9999999999999999999999999998877766555544333333333
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3e-09 Score=93.84 Aligned_cols=220 Identities=16% Similarity=0.209 Sum_probs=149.7
Q ss_pred ccCCCCCEEEEEEcCCCC--EEEEEe---CC---eEEEEEecCCCc---ceEEEcccCCceeEEEEEEeCC---eEEEEe
Q 017642 81 SSSPPPTLLHISFNQDHG--CFAAGT---DH---GFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCN---ILALVG 146 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~--~l~~~~---d~---~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~s 146 (368)
...|...|..+.+||.+. .+|+-- ++ .|+||.+..... ...+.|- ...-..+.|+.. .+++++
T Consensus 161 ~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF---kadkvqm~WN~~gt~LLvLas 237 (566)
T KOG2315|consen 161 HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF---KADKVQMKWNKLGTALLVLAS 237 (566)
T ss_pred eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc---ccceeEEEeccCCceEEEEEE
Confidence 446778899999998744 455432 22 299998762111 1122331 222345666643 334445
Q ss_pred cCCCC----CCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642 147 GGPDP----QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPK 217 (368)
Q Consensus 147 ~~~d~----~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v 217 (368)
..-|. -|...++++++++...+...+...++|.++.|+++++-++ .-.++.|||++ +..+..+ ..++-
T Consensus 238 tdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpR 314 (566)
T KOG2315|consen 238 TDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPR 314 (566)
T ss_pred EeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCc
Confidence 44443 1556789999988666666777899999999999997666 35689999985 5555554 56677
Q ss_pred eEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeC------CCcEEEEEECCC
Q 017642 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLD 290 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~------dg~~i~iwd~~~ 290 (368)
+.+-|+|.|+.++||--|...|.+.|||... +.+..+..- .-+-+.|+|||.+++|+.. |.. ++||+. +
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhy-t 390 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHY-T 390 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCC-eEEEEe-c
Confidence 8899999999888877677889999988766 333344433 3456789999999998875 566 999996 6
Q ss_pred CceeEeeEeccCcccEEEEEEec
Q 017642 291 GTLLQEVRRGADRAEIYSLAFSS 313 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~sp 313 (368)
|..+....- ......+.|-|
T Consensus 391 G~~l~~~~f---~sEL~qv~W~P 410 (566)
T KOG2315|consen 391 GSLLHEKMF---KSELLQVEWRP 410 (566)
T ss_pred Cceeehhhh---hHhHhheeeee
Confidence 766654332 11467777875
No 252
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=2.2e-08 Score=100.46 Aligned_cols=236 Identities=11% Similarity=0.129 Sum_probs=145.8
Q ss_pred EEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceEEEcccCC-------------ceeEEEEEEeCCe-EEEEecCCCCC
Q 017642 89 LHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGG-------------GIGVVEMLFRCNI-LALVGGGPDPQ 152 (368)
Q Consensus 89 ~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~s~~~d~~ 152 (368)
..+++++++. ++++-. .+.|++||.+... . ..+...+ -..-..+++++++ .++++....
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i--~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-I--VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-E--EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--
Confidence 4568887644 444444 5569999975322 1 1121000 0123456676543 333433332
Q ss_pred CCCCcEEEEeCCCCcEEEEEec------------------CCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEE
Q 017642 153 YPLNKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI 210 (368)
Q Consensus 153 ~~~~~i~vwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~ 210 (368)
+.|+++|..++. +.++.. -..-..+++++ ++.+++ .++.|++||..++... .+
T Consensus 646 ---~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 646 ---HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred ---ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 789999987764 333310 11346789999 455544 4678999999877543 22
Q ss_pred ecc---------------CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee--------------cc----
Q 017642 211 ETI---------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------------AH---- 257 (368)
Q Consensus 211 ~~~---------------~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--------------~~---- 257 (368)
.+. ......++++++++.++++- ..++.|++|+........+. .+
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 111 01234589999998777654 45789999876543221111 00
Q ss_pred ----CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-----------CcccEEEEEEecCCCEEEEEe
Q 017642 258 ----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS 322 (368)
Q Consensus 258 ----~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~s~s 322 (368)
-.....++++++|+++++-..++. |++||..++........+. .-.....|+++++|+++++-+
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 112468899999998888888888 9999988776553221110 112467899999999888888
Q ss_pred CCCeEEEEEccCCCC
Q 017642 323 DKGTVHVFNLKVNSG 337 (368)
Q Consensus 323 ~dg~i~iwd~~~~~~ 337 (368)
.++.|++||+++++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999988764
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=4.4e-10 Score=105.62 Aligned_cols=192 Identities=10% Similarity=0.092 Sum_probs=144.2
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEE---EEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVV---EMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
+.|....+.-+.+.++.+. ++.+.+||....... ..+......... -+-.+.+...++++.-- +.|.+|
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~-----~~iivW 160 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVL--SKIQSDERCTLYSSLIIGDSAEELYIASGSVF-----GEIIVW 160 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCcee--hhcCCCceEEEEeEEEEeccCcEEEEEecccc-----ccEEEE
Confidence 3444445555666676666 888999997654333 222112222222 23346777888888766 999999
Q ss_pred eCCCC-cEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEE-EEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642 162 DDHQS-RCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 162 d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
+.... ..++...|.+.|..+.++-||++++ .|..+++|++++.+... ..-+|...+..+++.++ . +++ ++
T Consensus 161 ~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~--i~t-~g 235 (967)
T KOG0974|consen 161 KPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R--IIT-VG 235 (967)
T ss_pred eccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e--eEE-ec
Confidence 98733 3343444999999999999999999 68999999999987665 55679999999999988 2 443 67
Q ss_pred CCCeEEEEecCcceeeeeeccCc-ceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 237 QKGQVRVEHYASKRTKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 237 ~dg~i~i~~~~~~~~~~~~~~~~-~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
.|.+.++|..++..+..+..|.. .|..++..++...+++++.|+. +++||+..
T Consensus 236 edctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~ 289 (967)
T KOG0974|consen 236 EDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNG 289 (967)
T ss_pred cceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhc
Confidence 89999999999988888888854 6899999998889999999999 99999853
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=2.1e-09 Score=89.32 Aligned_cols=202 Identities=12% Similarity=0.188 Sum_probs=135.7
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEeCCe-EEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~d~~-i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 154 (368)
+++....+.+++++.+.++.+.|.+|-+++ +.-+.+... +....+... .|...+..+.|+-....+++.+.|
T Consensus 61 psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~d---- 135 (404)
T KOG1409|consen 61 PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKD---- 135 (404)
T ss_pred chhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccc----
Confidence 344555677899999999999999999544 777765421 122223332 678888889998888888888876
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEc--CCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
..+.---.+.+..+..+.......++.+.-.-.++. ..|.|.+..+ ..-..+.++.+|.+.+.+++|.+.... +
T Consensus 136 -k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~--L 212 (404)
T KOG1409|consen 136 -KQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL--L 212 (404)
T ss_pred -cceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcE--E
Confidence 444333334444444333222222222222211111 2344544444 345678888999999999999887753 3
Q ss_pred EeecCCCCeEEEEecCcce--eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642 232 VCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (368)
.+|..|..+.+|+..++. ...+.+|...|..+...+.-+.|.+++.||. |.+||+.
T Consensus 213 -fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn 270 (404)
T KOG1409|consen 213 -FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN 270 (404)
T ss_pred -EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence 358889999999988754 4456789999999988888889999999999 9999984
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=3e-09 Score=86.65 Aligned_cols=220 Identities=12% Similarity=0.127 Sum_probs=141.9
Q ss_pred eEEEEEecCCCcceEEEcccCCceeEEEEEEe----CCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec-------C
Q 017642 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFR----CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------R 175 (368)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-------~ 175 (368)
.+.+|++...+......+.......+..+.|. .....++-...+ |.|.++.....+....+.. .
T Consensus 47 kl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKISV 121 (339)
T ss_pred ceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhhh
Confidence 37788876554432112211233344445543 111233333333 8899987655444444330 1
Q ss_pred CceeEEEEeeCccEEE---eCCcEEEEEcCCCeE--EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-
Q 017642 176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK- 249 (368)
Q Consensus 176 ~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~- 249 (368)
....++.|++.+.-++ .+|.+.+-+...+.. ++.++.|..+.....|+..... ++++|+.|+.+..|+....
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn--lvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN--LVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc--eEEecCCCceEEEEEecCCc
Confidence 1245667887776666 578888666554433 3477889888888888877665 4557999999999887732
Q ss_pred -eee-eeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCC-CceeEeeEeccCcccEEEEEEecCC--CEEEEEeC
Q 017642 250 -RTK-FIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSD 323 (368)
Q Consensus 250 -~~~-~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~--~~l~s~s~ 323 (368)
.+. ..+.|...|.+|.-+| .+.+|++|+.|.. |++||.++ ++++..-. -.+.|+.+.++|.- ++|+++-.
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHh
Confidence 222 2456888999998876 4669999999999 99999984 66665544 35789999999843 34555444
Q ss_pred CCeEEEEEccCCCCC
Q 017642 324 KGTVHVFNLKVNSGS 338 (368)
Q Consensus 324 dg~i~iwd~~~~~~~ 338 (368)
.| .+|-+.+.+..+
T Consensus 276 ~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 276 NG-AKILDSSDKVLE 289 (339)
T ss_pred cC-ceEEEecccccc
Confidence 54 788888776655
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=7.1e-09 Score=92.06 Aligned_cols=185 Identities=13% Similarity=0.094 Sum_probs=133.2
Q ss_pred CCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe--------------------CCeEEEEecCCCCCC
Q 017642 95 QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--------------------CNILALVGGGPDPQY 153 (368)
Q Consensus 95 ~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~s~~~d~~~ 153 (368)
|-+.++|... |+.++||+...++......-...-....++..|. .+...++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~--- 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ--- 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence 4466888887 7779999987665542211100112222222221 233444444444
Q ss_pred CCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642 154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 154 ~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (368)
|.|.+|++..|+....+. |.+.|.++.++.+-..+. .|+.+..|+...++.++.+......+..++++||+.
T Consensus 80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 899999999999888886 889999999888766666 588999999999999999988888889999999988
Q ss_pred eEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCC-----CCEEEEEe-CCCcEEEEEECCC
Q 017642 228 SLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD-----GQLLATSS-TKGTLVRIFNTLD 290 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~-----g~~l~s~~-~dg~~i~iwd~~~ 290 (368)
.++++ .++|++|+... +.+..+.+|.++|+++.|--+ |.++.++. .+.. |.+|-+..
T Consensus 158 ~l~~a-----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTA-----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK 221 (541)
T ss_pred EEEec-----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence 54432 48999977655 667789999999999999876 66666544 3444 88887654
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=1e-09 Score=91.16 Aligned_cols=245 Identities=11% Similarity=0.129 Sum_probs=167.9
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
.+...+|.+.|+....-|...-+.+.+ |..++||--.. ...+-..+.+..+..+..+.+..+...++.+-+. |
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrd-s~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n-----g 90 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRD-SGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN-----G 90 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecc-ccccCchhhhhCCCCceEeeeeccceEEEEEEec-----c
Confidence 345567888888887777777777777 88899996432 2333344445778889999999988888877665 8
Q ss_pred cEEEEeCCC----CcEEEEEe-cCCceeEEEEeeCccEEEe---CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642 157 KVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 157 ~i~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (368)
++.-+.+.. ....+.+. |...|..+-|+....+++. |..+.---.+.+..+..+... ..-....+ +-
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~----d~ 165 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQF----DA 165 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCce----ee
Confidence 888886543 33344444 8899999999887777772 333332223444332211100 00000111 10
Q ss_pred EEEEeecCCCCeEEE---EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEeeEeccCcc
Q 017642 229 LVLVCPGLQKGQVRV---EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRA 304 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i---~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~ 304 (368)
. .+..|...|.|.+ .......+.++.+|.+.+++++|.+...+|.+|..|.. +.+||+.-.+- ..++.+ |..
T Consensus 166 ~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g--h~~ 241 (404)
T KOG1409|consen 166 L-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG--HND 241 (404)
T ss_pred E-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--chh
Confidence 1 2233556666655 44555778889999999999999999999999999999 99999975543 335555 677
Q ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.|..+...+.-+.|.+++.||.|.+|+.+....
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 899998888888999999999999999976543
No 258
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.21 E-value=2.2e-09 Score=102.74 Aligned_cols=212 Identities=12% Similarity=0.104 Sum_probs=145.5
Q ss_pred cceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCC-------cEEEEEe-cCCceeEEEEeeCcc
Q 017642 118 EIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRI 188 (368)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~ 188 (368)
+.+..++ |.|...+..++.++.. -++++++.| |+|++||.+.- +...++. ....+.++...+.+.
T Consensus 1038 G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1038 GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred ceEeehh-hhccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 3444455 3777777788776655 899999998 99999997531 3444555 678899999888888
Q ss_pred EEE---eCCcEEEEEcCC--Ce-----EEEEEeccC-CC-eeEEEEecCCCeEEEEeecCCCCeEEEEecCccee-ee--
Q 017642 189 IVV---LEQKIFVYNFAD--LK-----LLHQIETIA-NP-KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF-- 253 (368)
Q Consensus 189 ~l~---~d~~i~vwd~~~--~~-----~~~~~~~~~-~~-v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~-- 253 (368)
.++ .||.|++.++.- .+ +.+....+. +. +..-++........+++ +...+.|..|+...... ..
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhh
Confidence 777 699999999864 11 122222221 22 22333433333323444 44567777787665332 22
Q ss_pred eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC---CEEEEEe--CCCeEE
Q 017642 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA---QWLAVSS--DKGTVH 328 (368)
Q Consensus 254 ~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~s~s--~dg~i~ 328 (368)
.....+.|++++.+|.+.+++.|+..|. +.+||++=+.++....-. +..+|..+..+|-. ...++++ ..+.|-
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 2234578999999999999999999999 999999998888887754 45788888887643 4555554 467899
Q ss_pred EEEccCCCCC
Q 017642 329 VFNLKVNSGS 338 (368)
Q Consensus 329 iwd~~~~~~~ 338 (368)
+|++.++...
T Consensus 1269 ~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1269 TWNMETGLRQ 1278 (1431)
T ss_pred eeecccCcce
Confidence 9999998543
No 259
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.2e-08 Score=90.71 Aligned_cols=192 Identities=11% Similarity=0.053 Sum_probs=122.4
Q ss_pred eEEEEEEeCCeE--EEE-ecC-CCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE------eCCcEEEEE
Q 017642 131 GVVEMLFRCNIL--ALV-GGG-PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV------LEQKIFVYN 200 (368)
Q Consensus 131 ~~~~~~~~~~~~--~~~-s~~-~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------~d~~i~vwd 200 (368)
......|++++. ++. +.. .+ ..|+++|+.+++........+......|+|||+.++ .+..|+++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~-----~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERK-----PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCC-----CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 566778888764 332 322 12 679999999887766555666677788999998776 145799999
Q ss_pred cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC-
Q 017642 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK- 279 (368)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d- 279 (368)
+.+++.. .+..+........|+|||+.+++.+.......|.+.+..+.....+...... ...|+|||++|+.....
T Consensus 264 l~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 264 TNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCC
Confidence 8877643 3433333334568999999877765322222566555555444333322211 24899999988766543
Q ss_pred ------C--cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC-C--eEEEEEccCC
Q 017642 280 ------G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLKVN 335 (368)
Q Consensus 280 ------g--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-g--~i~iwd~~~~ 335 (368)
+ . |.+.|+.+++.. .+... .......|+|||+.|+..+.+ + .|.+.+++..
T Consensus 341 ~~~~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 2 4 888898887654 44432 223468899999988766532 2 3666666544
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=115.04 Aligned_cols=189 Identities=13% Similarity=0.116 Sum_probs=147.3
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA 202 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~ 202 (368)
+-..+.+|.-+|...+.++|+.| |.+++|....++.+..+. ....|+.+.|+.+|.... .||.+.+|.+.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 33456777778888888899888 999999999998888887 568899999999887665 69999999986
Q ss_pred CCeEEEEEeccCCCeeEEEEecCCCeEEEEeec--CCCCeEEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeC
Q 017642 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSST 278 (368)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g--~~dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~ 278 (368)
.+.....+.|......+.|-.. +++..| +.++.+.+|+....... .-..|.+.++++++.|..++|++|+.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 4555556667776666666552 233323 45788888886543222 22789999999999999999999999
Q ss_pred CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
+|. |++||++..+.++.++. +. ...++++|+..|.|+||++....-..
T Consensus 2357 ~G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2357 KGE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cCc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhh
Confidence 999 99999998888766653 33 45689999999999999998875543
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=3e-08 Score=86.06 Aligned_cols=149 Identities=12% Similarity=-0.031 Sum_probs=113.7
Q ss_pred CCcccccCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (368)
Q Consensus 76 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~ 153 (368)
..+++.-.|...|....+.-+++-++.|. |+ .+-|||.++++.. .+. ..-..+.++..++++..++.+...
T Consensus 350 ~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---r~e-~~lg~I~av~vs~dGK~~vvaNdr--- 422 (668)
T COG4946 350 DGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---RIE-KDLGNIEAVKVSPDGKKVVVANDR--- 422 (668)
T ss_pred CCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---Eee-CCccceEEEEEcCCCcEEEEEcCc---
Confidence 34566678889999999999999888898 66 4999998766533 222 555678888899998877776655
Q ss_pred CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecC
Q 017642 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (368)
Q Consensus 154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (368)
..|.+.|+.+|+....=+ ..+-|+.+.|+|++++++ .-..|+++|+..++....- .....-.+-+|.|+
T Consensus 423 --~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d 499 (668)
T COG4946 423 --FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPD 499 (668)
T ss_pred --eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCC
Confidence 889999999997655444 677899999999999999 2468999999888765443 33334456789999
Q ss_pred CCeEEEEee
Q 017642 226 VGSLVLVCP 234 (368)
Q Consensus 226 ~~~~~l~~~ 234 (368)
++++++.+.
T Consensus 500 ~ryLYfLs~ 508 (668)
T COG4946 500 GRYLYFLSA 508 (668)
T ss_pred CcEEEEEec
Confidence 998877653
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.13 E-value=1.5e-08 Score=88.55 Aligned_cols=241 Identities=13% Similarity=0.087 Sum_probs=162.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC----------CC
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----------YP 154 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~----------~~ 154 (368)
.-++..++|||.|++|++....+|.+|.-...... ..+ ....+..+.|+|++.+|.+-.+.+. ..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhhe--eee---ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 34678889999999999999889999997766533 333 2335778889999999988776543 23
Q ss_pred CCcEEEEeCCCCcEEEEEe-cCCc--ee-EEEEeeCccEEE--eCCcEEEEEcCCCeEE-EEEec-cCCCeeEEEEecCC
Q 017642 155 LNKVMIWDDHQSRCIGELS-FRSE--VR-SVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQIET-IANPKGLCAVSQGV 226 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~~-~~~~--v~-~~~~~~~~~~l~--~d~~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~ 226 (368)
++.+.+||+.+|..+..+. -... .+ -+.|+.+..+++ ....++|+++ ++... ..+.. ....+....|+|.+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 3579999999999999887 3333 45 678999999998 6889999997 33221 11111 12456777888876
Q ss_pred CeEEEEe----ecCCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeC-----------CCcEEEEEECCC
Q 017642 227 GSLVLVC----PGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-----------KGTLVRIFNTLD 290 (368)
Q Consensus 227 ~~~~l~~----~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-----------dg~~i~iwd~~~ 290 (368)
++-.+++ .+..++++++|........... -....-..+.|++.|++|+.--. ... ++|+++..
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeecc
Confidence 5544443 2446788888776643322211 11222246789999986654311 234 88888864
Q ss_pred CceeEeeEeccCcccEEEEEEecCCCEEEEEe--CCCeEEEEEccCC
Q 017642 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVN 335 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~ 335 (368)
..+.... . ..++|.+.+|.|+++.+++.+ .+-.+-++|++..
T Consensus 265 ~~i~V~~-~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 265 RSIPVEK-D--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cccceec-c--ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 3333222 2 467999999999998766554 6777888888765
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=1.5e-09 Score=92.08 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=109.5
Q ss_pred eEEEEeeCccEEE---eCCcEEEEEcCCC----eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee
Q 017642 179 RSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (368)
Q Consensus 179 ~~~~~~~~~~~l~---~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~ 251 (368)
..+..++++++++ .+....++++... +++..... ...-..+.+..+.....++-..+....+.+|.......
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3344555666666 2344445544322 22222222 22234455666666555554444556666666554555
Q ss_pred eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 252 ~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
..+-+|-..++.|+|+||+++|+++..|.. |+|-.......+..|..+ |...|..++.-+ +..|+++|.|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~-~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTD-NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeecc-CceeeecCCCCcEEEEe
Confidence 667799999999999999999999999999 999888877777777765 788999999875 45689999999999999
Q ss_pred ccCCCCCC
Q 017642 332 LKVNSGSA 339 (368)
Q Consensus 332 ~~~~~~~~ 339 (368)
+.+++...
T Consensus 222 ~~sgk~L~ 229 (390)
T KOG3914|consen 222 ITSGKLLD 229 (390)
T ss_pred cccCCccc
Confidence 99998874
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=2.3e-09 Score=89.11 Aligned_cols=233 Identities=12% Similarity=0.162 Sum_probs=152.0
Q ss_pred CCCEEEEEEcCCCC---EEEEEeCCeEEEEEecCCCcce---------------------------------EEEcccCC
Q 017642 85 PPTLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREIF---------------------------------RRDFERGG 128 (368)
Q Consensus 85 ~~~v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~~~~~---------------------------------~~~~~~~~ 128 (368)
...|+.+.|.+++. +|+++.|.+|++|.+....... .+.+.+.|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 45789999998865 5666669999999885322211 12233678
Q ss_pred ceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC-cEE--EEEe------cCCceeEEEEeeCccEEE----eCCc
Q 017642 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCI--GELS------FRSEVRSVKLRRDRIIVV----LEQK 195 (368)
Q Consensus 129 ~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~-~~~--~~~~------~~~~v~~~~~~~~~~~l~----~d~~ 195 (368)
...+.++.++.+...+.++++ =.|.+|+++-- +.. ..++ ...-|++..|+|..-.++ +.|+
T Consensus 164 tyhiNSIS~NsD~Et~lSADd------LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSADD------LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred eeEeeeeeecCccceEeeccc------eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 888889999999999988875 68999997632 221 1222 234578888999654333 5899
Q ss_pred EEEEEcCCCeE----EEEEecc------------CCCeeEEEEecCCCeEEEEeecCCC-CeEEEEecCc--ceeeeeec
Q 017642 196 IFVYNFADLKL----LHQIETI------------ANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS--KRTKFIMA 256 (368)
Q Consensus 196 i~vwd~~~~~~----~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~g~~d-g~i~i~~~~~--~~~~~~~~ 256 (368)
|++-|++...+ .+.+... -..|..+.|+.+|++ +++ .| -+|++|+.+. +++.++..
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry--ils---RDyltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY--ILS---RDYLTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE--EEE---eccceeEEEeccccCCcceEEee
Confidence 99999984321 1111111 124567899999985 433 34 6888998754 55566555
Q ss_pred cCc------------c---eEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee--------------------EeeEecc
Q 017642 257 HDS------------R---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--------------------QEVRRGA 301 (368)
Q Consensus 257 ~~~------------~---i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~--------------------~~~~~~~ 301 (368)
|.. . -..++|+.++.+++||+.... .+++++..|... ....++.
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~-frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~ 391 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV-FRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGK 391 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce-EEEecCCCCcceeecccccccCCcccccccceeeecCCC
Confidence 532 1 245789999999999999998 999996544211 0000110
Q ss_pred C------------cccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642 302 D------------RAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 302 ~------------~~~v~~l~~sp~~~~l~s~s~dg~i~iw 330 (368)
+ ...+...+|+|..+.+|.+..++ ++||
T Consensus 392 r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 392 RKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 1 12355678899888888776554 6665
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.9e-09 Score=97.79 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=160.0
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-------------ceEEEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-------------IFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 150 (368)
.....|++|+.+..++|+|+ |+-++|..+.+... ...+.++ +|...|.-+.|+.+...+.+.+.+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCCC
Confidence 45789999999999999999 77799988764322 1223454 899999999999999999998887
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec
Q 017642 151 PQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 224 (368)
|-|.+|-+-.|....++. .++-|.+++|+.||..++ .||.|.+=.+. |..+.--.........+.|++
T Consensus 93 -----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 93 -----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSE 166 (1189)
T ss_pred -----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecc
Confidence 999999988876544432 567799999999998776 69999888774 333322111222334688999
Q ss_pred CCCeEEEEeecCCCCeEEEEecCcceeeee------------eccCcceEEEEEC--------CCCCEEEEEeCCCcEEE
Q 017642 225 GVGSLVLVCPGLQKGQVRVEHYASKRTKFI------------MAHDSRIACFALT--------QDGQLLATSSTKGTLVR 284 (368)
Q Consensus 225 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~------------~~~~~~i~~v~~s--------p~g~~l~s~~~dg~~i~ 284 (368)
|.+..++ +-.+|.+.+++..+.....+ ......|..+.|. ||...|+.+-.+|. +.
T Consensus 167 D~~~~Lf---~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr-~Q 242 (1189)
T KOG2041|consen 167 DLEQALF---KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR-MQ 242 (1189)
T ss_pred cHHHHHh---hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-eh
Confidence 9875433 44688999977665321111 1122235556663 46779999999999 88
Q ss_pred EEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC
Q 017642 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (368)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 324 (368)
|..-.+......+.. .-.|..+.|+++|..|++++.|
T Consensus 243 iMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCc
Confidence 876544433334443 3478899999999999998765
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.6e-08 Score=87.93 Aligned_cols=238 Identities=16% Similarity=0.189 Sum_probs=151.8
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC------CCCcEEEE
Q 017642 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY------PLNKVMIW 161 (368)
Q Consensus 88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~------~~~~i~vw 161 (368)
-+.+.|||.|.||++-...||.+|--...... +.|. | ..+.-+.|+|+..+|++-+..+.- ....+.||
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~--H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY--H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc--C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 46789999999999999999999975554444 3453 2 235556778877777776544332 23689999
Q ss_pred eCCCCcEEEEEec---CCcee-EEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 162 DDHQSRCIGELSF---RSEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 162 d~~~~~~~~~~~~---~~~v~-~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
|+.+|...+.+.. ...++ -+.||.|+++++ ....|.||+..+..++..-...-..|....|+|.+.-+..-+..
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9999998888872 22333 457999999999 57899999987755443333344567778899987632222211
Q ss_pred CCC--CeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeC----------CCcEEEEEECCCCce-eEeeEecc
Q 017642 236 LQK--GQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST----------KGTLVRIFNTLDGTL-LQEVRRGA 301 (368)
Q Consensus 236 ~~d--g~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~----------dg~~i~iwd~~~~~~-~~~~~~~~ 301 (368)
..+ ..+.+ -....+.++...-|.-.-..+.|..+|.+|+.--. -.. +.|+.++.... +..+.
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve--- 443 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE--- 443 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee---
Confidence 111 12222 22233344443333333345677788888875321 113 66777665443 22233
Q ss_pred CcccEEEEEEecCCCEEEEEeC---CCeEEEEEccC
Q 017642 302 DRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKV 334 (368)
Q Consensus 302 ~~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~ 334 (368)
-...|...+|-|.|..+++-+. ..++.+|.+++
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 3457999999999987765542 45799999986
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=4.6e-08 Score=88.62 Aligned_cols=200 Identities=10% Similarity=-0.014 Sum_probs=117.7
Q ss_pred CEEEEEEcCCCCE-EEEEe-CC-e--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEE-ecCCCCCCCCCcEEE
Q 017642 87 TLLHISFNQDHGC-FAAGT-DH-G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPLNKVMI 160 (368)
Q Consensus 87 ~v~~~~~s~~g~~-l~~~~-d~-~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~~~i~v 160 (368)
.+....|+|||+. ++..+ ++ . |.++|+.+++...... .........|++++..++ +...+ .+..|.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~SPDG~~la~~~~~~---g~~~Iy~ 261 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVSKDGSKLLLTMAPK---GQPDIYL 261 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEECCCCCEEEEEEccC---CCcEEEE
Confidence 6778999999985 66544 42 2 8888887665543322 222233455677664332 22211 1267999
Q ss_pred EeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCC----cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642 161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQ----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
+|+.+++......+........|+|||+.++ .+. .|+++|+.+++..+...... ....|+|||+.++++..
T Consensus 262 ~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 262 YDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred EECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEc
Confidence 9988876443333444345668999998777 332 79999998877644332211 12489999998666542
Q ss_pred cCC-----C-CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--EEEEEECCCCceeEeeE
Q 017642 235 GLQ-----K-GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 235 g~~-----d-g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~ 298 (368)
... . ..|.+.+..+.....+.... ......|+|||+.|+....++. .|.+.++. |.....+.
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~ 408 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFP 408 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEee
Confidence 211 1 35666555555555554432 2346889999997776655432 15566663 33333444
No 268
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.10 E-value=2.8e-07 Score=77.63 Aligned_cols=235 Identities=17% Similarity=0.166 Sum_probs=152.6
Q ss_pred CEEEEEEcC-CCCEEEEEe-CCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642 87 TLLHISFNQ-DHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 87 ~v~~~~~s~-~g~~l~~~~-d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~ 163 (368)
....++.+| ++..++.+. -+. ..+||..+++......-. ......-.-.|++++..+++...|..-..|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 455678888 455667777 444 888998877765432221 2222233457888988888877765555689999999
Q ss_pred C-CCcEEEEEe-cCCceeEEEEeeCccEEE-e--------------------CCcEEEEEcCCCeEEEEEe----ccCCC
Q 017642 164 H-QSRCIGELS-FRSEVRSVKLRRDRIIVV-L--------------------EQKIFVYNFADLKLLHQIE----TIANP 216 (368)
Q Consensus 164 ~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~--------------------d~~i~vwd~~~~~~~~~~~----~~~~~ 216 (368)
. +.+.+.++. +.-.-..+.+.||+..++ . +-.+...|.++|+.+.... .|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 667888887 777788899999995554 2 2245566777888776643 25567
Q ss_pred eeEEEEecCCCeEEEEeecCCCC-------eEEEEecCcceeeee-------eccCcceEEEEECCCCCEEEEEeCCCcE
Q 017642 217 KGLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYASKRTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTL 282 (368)
Q Consensus 217 v~~~~~~~~~~~~~l~~~g~~dg-------~i~i~~~~~~~~~~~-------~~~~~~i~~v~~sp~g~~l~s~~~dg~~ 282 (368)
+..+++..+|. +++..-..| .+.++..... +..+ ..-.+.|-+|+++.+|.++++.+-.|..
T Consensus 165 iRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 165 IRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred eeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 88888888875 222111111 1222322221 2222 2345689999999999988777766655
Q ss_pred EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
+.+||..+++.+..... ..+..++-.+++ ++++.+ .|. ++.+..
T Consensus 241 ~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~--~~~~~~ 284 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQ--LIRLSP 284 (305)
T ss_pred EEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCC-Ccc--EEEccC
Confidence 99999999999877654 246777777766 565544 443 444443
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.09 E-value=7.1e-08 Score=84.46 Aligned_cols=237 Identities=9% Similarity=0.103 Sum_probs=155.5
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe--EEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR 167 (368)
Q Consensus 90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~d~~~~~~~i~vwd~~~~~ 167 (368)
-+.|+-+.+++|--..+.++|+++. .... ...+..-....+..+.++|.+ ..++.-.-...-.++.+++|.+..+.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t-~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEIT-DNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecC-Cccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 4667777776655545568888862 2111 111211234567777777752 12222111111123789999998777
Q ss_pred EEEEEe-cCCceeEEEEeeCccEEE--------------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 168 CIGELS-FRSEVRSVKLRRDRIIVV--------------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 168 ~~~~~~-~~~~v~~~~~~~~~~~l~--------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
.+.+-. ..-.=..+.|++.|.+++ ....++|++++...+ .......++|...+|.|.++.+.++
T Consensus 214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEE
Confidence 766655 444456788888887776 135788999874433 3332557899999999999997776
Q ss_pred eecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeE-eeEeccCcccEEE
Q 017642 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQ-EVRRGADRAEIYS 308 (368)
Q Consensus 233 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~-~~~~~~~~~~v~~ 308 (368)
+ |..+-.+.+.+..+.....+. ...=..+.|+|.+++++.++-| |. |.+||......+. .+.+ ....-
T Consensus 293 ~-g~~pa~~s~~~lr~Nl~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~ 364 (561)
T COG5354 293 S-GYMPASVSVFDLRGNLRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY 364 (561)
T ss_pred e-cccccceeecccccceEEecC--CcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence 5 888888988888877544333 3344678899999998887665 57 9999976654443 4443 23456
Q ss_pred EEEecCCCEEEEEe------CCCeEEEEEccCCCC
Q 017642 309 LAFSSNAQWLAVSS------DKGTVHVFNLKVNSG 337 (368)
Q Consensus 309 l~~sp~~~~l~s~s------~dg~i~iwd~~~~~~ 337 (368)
+.|+||++++.+.. .|..|.|||+....-
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 78999999887663 377899999976543
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.09 E-value=1.3e-06 Score=73.94 Aligned_cols=211 Identities=14% Similarity=0.086 Sum_probs=135.7
Q ss_pred EEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe-CCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642 90 HISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS 166 (368)
Q Consensus 90 ~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~~~~~~i~vwd~~~~ 166 (368)
++.|.+ +|.++++.. .+.|..|+........ ..+ .. ...+.+. +++.++++.. +.+.++|..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC---CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence 568888 566666655 6668888876544332 222 22 5566666 6677776665 56777799888
Q ss_pred cEEEEEec------CCceeEEEEeeCccEEEe---------C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 167 RCIGELSF------RSEVRSVKLRRDRIIVVL---------E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 167 ~~~~~~~~------~~~v~~~~~~~~~~~l~~---------d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
+....... ....+.+++.++|.+.+. . |.|+.++.. ++...... .....+.++|+++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchhe
Confidence 65444432 346788999999987772 1 568888876 55444443 34456789999999987
Q ss_pred EEEeecCCCCeEEEEecC--cc---eeeee---eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642 230 VLVCPGLQKGQVRVEHYA--SK---RTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~--~~---~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (368)
+++- +..+.|..++.. .. ....+ ....+....+++..+|++.++....+. |.++|.. |+.+..+...
T Consensus 149 yv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p- 223 (246)
T PF08450_consen 149 YVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP- 223 (246)
T ss_dssp EEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S-
T ss_pred eecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC-
Confidence 6653 456666664432 22 11122 222234788999999998887777788 9999976 9988888864
Q ss_pred CcccEEEEEEe-cCCCEEEEE
Q 017642 302 DRAEIYSLAFS-SNAQWLAVS 321 (368)
Q Consensus 302 ~~~~v~~l~~s-p~~~~l~s~ 321 (368)
...+++++|. ++.+.|+..
T Consensus 224 -~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 224 -VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -SSSEEEEEEESTTSSEEEEE
T ss_pred -CCCEEEEEEECCCCCEEEEE
Confidence 3479999995 666665544
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.07 E-value=2.1e-07 Score=91.88 Aligned_cols=254 Identities=10% Similarity=0.092 Sum_probs=154.5
Q ss_pred CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEE----Eec--------C-CCcc--------eEEEcc----c----
Q 017642 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIY----NCD--------P-FREI--------FRRDFE----R---- 126 (368)
Q Consensus 77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw----~~~--------~-~~~~--------~~~~~~----~---- 126 (368)
.......-+..|.+++||||+.+|+..+ ++.+.+- +.- . +... ...+|. .
T Consensus 112 ~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~ 191 (928)
T PF04762_consen 112 EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR 191 (928)
T ss_pred eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhh
Confidence 3344556678999999999999998888 6665443 220 0 0000 000110 0
Q ss_pred ---C------------CceeEEEEEEeCCeEEEEecCCCCCCC-CCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccE
Q 017642 127 ---G------------GGIGVVEMLFRCNILALVGGGPDPQYP-LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII 189 (368)
Q Consensus 127 ---~------------~~~~~~~~~~~~~~~~~~s~~~d~~~~-~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 189 (368)
. ....-..++|.+++.+++...-++.-. ...|+||+ ++|+...+-+ ..+--.+++|.|.|.+
T Consensus 192 ~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~l 270 (928)
T PF04762_consen 192 QLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNL 270 (928)
T ss_pred hccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCE
Confidence 0 122456778888888877655421111 26899999 5576554444 4444567899999999
Q ss_pred EEe------CCcEEEEEcCCCeEEEEEec----cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce---eeeee-
Q 017642 190 VVL------EQKIFVYNFADLKLLHQIET----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIM- 255 (368)
Q Consensus 190 l~~------d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~- 255 (368)
++. ...|.+|. ++|-....|.. ....+..+.|+.|++-+.+.. ...|.+|...... .+.+.
T Consensus 271 IA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred EEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEc
Confidence 991 34566676 56655555533 345688899999998655543 3348888776522 22222
Q ss_pred ccCcceEEEEECCCCC-EEEEEeCCCcEEEEEEC----CCCc--------eeEeeEe---------------------cc
Q 017642 256 AHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNT----LDGT--------LLQEVRR---------------------GA 301 (368)
Q Consensus 256 ~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~----~~~~--------~~~~~~~---------------------~~ 301 (368)
.....+..+.|+|... .|...+.+|. +..++. ..+. .+..+.+ -.
T Consensus 346 ~~~~~~~~~~Wdpe~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~ 424 (928)
T PF04762_consen 346 SSSESVNFVKWDPEKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE 424 (928)
T ss_pred cCCCCCCceEECCCCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc
Confidence 1223355599999544 5666666566 555433 2110 1111111 01
Q ss_pred CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
-...|.+++|++++..+++-..||.|.+|.......
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~ 460 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNM 460 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCc
Confidence 246899999999998899999999999999766543
No 272
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.06 E-value=7.3e-07 Score=73.03 Aligned_cols=228 Identities=11% Similarity=0.119 Sum_probs=132.9
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (368)
Q Consensus 90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~ 167 (368)
.++.+.+|++||+-.|..|.|-.....=.. ....+.....-.-..++|++++..++.+... |+|+++|+.. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~ 75 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-S 75 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-c
Confidence 356789999999999999888876432211 1122322344456678999999988887776 9999999764 3
Q ss_pred EEEEEe--------cCCceeEEEEeeCc-------cEEE--eCCcEEEEEcCC-----CeEEEEEec---cCCCeeEEEE
Q 017642 168 CIGELS--------FRSEVRSVKLRRDR-------IIVV--LEQKIFVYNFAD-----LKLLHQIET---IANPKGLCAV 222 (368)
Q Consensus 168 ~~~~~~--------~~~~v~~~~~~~~~-------~~l~--~d~~i~vwd~~~-----~~~~~~~~~---~~~~v~~~~~ 222 (368)
.+..+. ....|..+.|.+.. .+++ .+|.++-|-+.. .+..+.+.. ....|.++.+
T Consensus 76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 333332 23566777775532 3333 577777776532 334444432 3567888999
Q ss_pred ecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCE--EEEEeCCCcE-----EEEEECCCCceeE
Q 017642 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL--LATSSTKGTL-----VRIFNTLDGTLLQ 295 (368)
Q Consensus 223 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~--l~s~~~dg~~-----i~iwd~~~~~~~~ 295 (368)
+|..+- +++ +|.....-..+ ++....+++-..-.+..+ .++..+|+.. -.+|.+-+.+...
T Consensus 156 ~p~h~L-LlV-gG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 156 HPKHRL-LLV-GGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred cCCCCE-EEE-eccCCCCCccc----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 888763 333 35544421111 111222332222212211 1222222210 1344433322211
Q ss_pred eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.. ......|..|..||||+.||+...+|.|.+|++..-+.
T Consensus 224 -~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 224 -RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred -cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 11 11456899999999999999999999999999976544
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=4.6e-07 Score=76.43 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=135.3
Q ss_pred EEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceE--EEcccCCc--------eeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 89 LHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFR--RDFERGGG--------IGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 89 ~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
..++++++|++|+++. -+.|.++-+........ ..+.|... ..+....+.|++.++++.+-. -.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----~D 167 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----TD 167 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----Cc
Confidence 7899999999999998 44599999865432211 12211111 115566677877665554321 14
Q ss_pred cEEEEeCCCCcEEE----EEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCC-e---EEEEEec------cCCCee
Q 017642 157 KVMIWDDHQSRCIG----ELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-K---LLHQIET------IANPKG 218 (368)
Q Consensus 157 ~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~-~---~~~~~~~------~~~~v~ 218 (368)
.|.+|++.+|+... .++....-+.|.|+|+++++. .+++|.+|..... . .++.+.. ......
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 79999999875432 234667889999999999876 6999999998763 2 2333221 223456
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEEEe--cCcceeee---eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC--CC
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRVEH--YASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DG 291 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~~~~~~~---~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~--~~ 291 (368)
.+.+++||+.+++. .-..| .|.++. ..+..+.. ...+....+...|++.|++|+++.+++..|.+|.+. +|
T Consensus 248 aIhis~dGrFLYas-NRg~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 248 AIHISPDGRFLYAS-NRGHD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred EEEECCCCCEEEEe-cCCCC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 78899999975543 22223 454432 23333322 233445578899999999999999877558898765 44
Q ss_pred ceeEeeEeccCcccEEEEEEe
Q 017642 292 TLLQEVRRGADRAEIYSLAFS 312 (368)
Q Consensus 292 ~~~~~~~~~~~~~~v~~l~~s 312 (368)
++-...... ......||.|.
T Consensus 326 ~L~~~~~~~-~~p~Pvcv~f~ 345 (346)
T COG2706 326 RLTLLGRYA-VVPEPVCVKFL 345 (346)
T ss_pred eEEeccccc-CCCCcEEEEEc
Confidence 443322211 23345566664
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.04 E-value=1.9e-07 Score=81.24 Aligned_cols=144 Identities=12% Similarity=0.181 Sum_probs=114.1
Q ss_pred CccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC-eEEEEecCcceeeeeeccCcceE
Q 017642 186 DRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKRTKFIMAHDSRIA 262 (368)
Q Consensus 186 ~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg-~i~i~~~~~~~~~~~~~~~~~i~ 262 (368)
+|.+++ +-|...+.+...+-.++. ++.+.|.-..+..+++..++ |..|| .+-|++..+..++.+...-+.|.
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vi---gt~dgD~l~iyd~~~~e~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVI---GTNDGDKLGIYDKDGGEVKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEE---eccCCceEEEEecCCceEEEeeCCccceE
Confidence 455555 788999888766655543 45667887888888876444 55788 77789999999999998889999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC----eEEEEEccCCCC
Q 017642 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSG 337 (368)
Q Consensus 263 ~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----~i~iwd~~~~~~ 337 (368)
++..+++|++++.+..... |.+.|+.+|.....-+. ..+-|+.++|+|+++++|-+--+| .|+++|+..++-
T Consensus 406 av~vs~dGK~~vvaNdr~e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFE-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEcCCCcEEEEEcCceE-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999999999888887 99999999987644333 567899999999999999775544 689999887654
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=2.2e-09 Score=106.22 Aligned_cols=193 Identities=13% Similarity=0.211 Sum_probs=146.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
.|-..|.++.=+|...+.++|+ |+.|++|....++.+..... .+...+..+.|+.+|..+..+..| |.|.+|
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~l~ 2278 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGD-----GDLSLW 2278 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec--cCcchhhhhhhcccCCceeeeccC-----Cceeec
Confidence 4455788888889888888888 88899999987777655443 455888889998888777777776 999999
Q ss_pred eCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCC--C-eEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD--L-KLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
.+. .++....+ |.....++.|-..+..-+ .++.+.+||..- + .++. ..|.+.++++++.|... +++
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--lli- 2352 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LLI- 2352 (2439)
T ss_pred ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EEE-
Confidence 976 56666666 888888888877333333 478999999732 2 2333 67899999999999876 333
Q ss_pred ecCCCCeEEEEecCcceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642 234 PGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (368)
+|+.+|.|++|+...+.+. ++.. ++ ...++++|+..|. |+||++.....++.+..
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence 5899999999988765543 2332 44 4568999999999 99999998888877764
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=9.6e-08 Score=84.52 Aligned_cols=236 Identities=11% Similarity=0.164 Sum_probs=150.7
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (368)
Q Consensus 90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~ 169 (368)
-..||.|++++|--..++|.||+.......-.+.+ ...++..+.|+|...+++.-.....-....+.+..+.+++.+
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl---ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL---KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeeccccc---CCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 36899999999988888999999766444333333 344567788888776666543321122246777777777777
Q ss_pred EEEe-cCCceeEEEEeeCccEEE--eC--------C---cEEEEEcCCCeE-EEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642 170 GELS-FRSEVRSVKLRRDRIIVV--LE--------Q---KIFVYNFADLKL-LHQIETIANPKGLCAVSQGVGSLVLVCP 234 (368)
Q Consensus 170 ~~~~-~~~~v~~~~~~~~~~~l~--~d--------~---~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 234 (368)
++-. +.-.=..+-|..+|.+|+ .| | .+.|+.++.... +..+ .....+-..+|-|.|+.+.++..
T Consensus 387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEc
Confidence 7655 443344567888888887 11 1 344555544332 2222 23456777899999999877763
Q ss_pred cCCCCeEEEEecCc-----ceeeeeeccCcceEEEEECCCCCEEEEEe---CCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642 235 GLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 235 g~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~v~~sp~g~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
-....++.++.... ..+..+.. ...+.+.|+|.|++++.+. ..|. +.++|+.-......-.. .| ...
T Consensus 466 ~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k~~~~~-eh-~~a 540 (698)
T KOG2314|consen 466 NTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLKDTASP-EH-FAA 540 (698)
T ss_pred cccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhhhccCc-cc-ccc
Confidence 33345566655442 22223332 4568899999999887664 4677 99999874332222111 13 356
Q ss_pred EEEEEecCCCEEEEEeC------CCeEEEEEccC
Q 017642 307 YSLAFSSNAQWLAVSSD------KGTVHVFNLKV 334 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~------dg~i~iwd~~~ 334 (368)
+.+.|.|.|+|+++++. |.--+||+++-
T Consensus 541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 78999999999998864 44567888754
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=9.4e-08 Score=78.10 Aligned_cols=180 Identities=11% Similarity=0.126 Sum_probs=120.6
Q ss_pred CcEEEEeCCCCcEEE--EEe--cCCceeEEEEee---CccE-EE---eCCcEEEEEcCCCeEEEEEeccCC------Cee
Q 017642 156 NKVMIWDDHQSRCIG--ELS--FRSEVRSVKLRR---DRII-VV---LEQKIFVYNFADLKLLHQIETIAN------PKG 218 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~--~~~--~~~~v~~~~~~~---~~~~-l~---~d~~i~vwd~~~~~~~~~~~~~~~------~v~ 218 (368)
|.+.+|++.+.+.+. +++ ....+..|.|.. +|.+ ++ ..|.|.++..........+.+-.. ..-
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 678888877654333 232 455667777764 3442 22 578888888754443333332111 123
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEE-EecCc--ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECC-CCce
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRV-EHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTL-DGTL 293 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~--~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~-~~~~ 293 (368)
++.|++.+..+++ +..+|.+.+ +.... +.++.++.|.-++....|+... +++.+|++|+. +..||++ .++.
T Consensus 126 slD~~~~~~~i~v---s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 126 SLDISTSGTKIFV---SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTF 201 (339)
T ss_pred EEEeeccCceEEE---EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcce
Confidence 5677777776332 456788875 33332 4555789999999999998644 58999999999 9999999 3444
Q ss_pred eEe-eEeccCcccEEEEEEec-CCCEEEEEeCCCeEEEEEcc-CCCCCCCC
Q 017642 294 LQE-VRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLK-VNSGSARS 341 (368)
Q Consensus 294 ~~~-~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~-~~~~~~~~ 341 (368)
+.. .+. |...|.+|.-+| .+.++++|+.|..|++||.+ -+++....
T Consensus 202 i~~n~kv--H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 202 IWHNSKV--HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred eeeccee--eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence 433 333 778899998875 57799999999999999998 45555443
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.98 E-value=1.8e-07 Score=75.50 Aligned_cols=236 Identities=13% Similarity=0.091 Sum_probs=137.3
Q ss_pred EEEEcCC-----CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 90 HISFNQD-----HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 90 ~~~~s~~-----g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
.+.|-|- ..+||.|+ .+...+|...+.+......-.+...+.+. ..+-..-.+.+++ .| .++++.+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s--nd-----ht~k~~~ 144 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS--ND-----HTGKTMV 144 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc--CC-----cceeEEE
Confidence 3556552 34777776 66699999886655432211111111111 1111222233333 33 6777777
Q ss_pred CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC-CeEEEEE--eccCCCeeEEEEecCCCeEEEEeec
Q 017642 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
+.-+....... ..-.+.++.+++|+++++ ....|..|.+.. ++.+..+ ....+.-.+..|+..... +|+ +
T Consensus 145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~--FAv-~ 221 (344)
T KOG4532|consen 145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ--FAV-V 221 (344)
T ss_pred EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce--EEE-E
Confidence 65443322222 113388999999999988 346888898843 3332222 222333445666665554 443 6
Q ss_pred CCCCeEEEEecCcce------eeeeeccCcceEEEEECCCCC--EEEEEeCCCcEEEEEECCCCceeEeeEecc-----C
Q 017642 236 LQKGQVRVEHYASKR------TKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----D 302 (368)
Q Consensus 236 ~~dg~i~i~~~~~~~------~~~~~~~~~~i~~v~~sp~g~--~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----~ 302 (368)
.+||.+.||+..... ..+-..|.+.++.+.|++-|. +|+..-.-+. +.+.|+++++..+.+.... |
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCccccccc
Confidence 799999998866421 122335899999999998665 4554444556 9999999987665544321 1
Q ss_pred -cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 303 -RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 303 -~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
...|..-.|+.++.-+.+.+++. +.=|++....+
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR 335 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRSR 335 (344)
T ss_pred cccccccccccCCCcccccccchh-hheeeccccce
Confidence 23477778887777666665553 55666665544
No 279
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.98 E-value=1.5e-06 Score=73.03 Aligned_cols=215 Identities=17% Similarity=0.168 Sum_probs=127.9
Q ss_pred CCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEE
Q 017642 105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL 183 (368)
Q Consensus 105 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~ 183 (368)
++.|..||..+++......+. ........... ..+.+++.+.. +.|..||..+|+.+..+...+.+.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPISGAPV 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCGGSGEE
T ss_pred CCEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeeccccccceee
Confidence 455778888777777666653 21222222233 44444444322 8999999999999988885544433334
Q ss_pred eeCccEEE--eCCcEEEEEcCCCeEEEEE-eccCC---CeeEEEEecCCCeEEEEeecCCCCeEEEEe-cCcceeeeeec
Q 017642 184 RRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIAN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YASKRTKFIMA 256 (368)
Q Consensus 184 ~~~~~~l~--~d~~i~vwd~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~ 256 (368)
..++.+++ .++.|+.+|.++|+.+... ..... .........+++.+++. ..++.|...+ .+++.+.....
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG---TSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE---ETCSEEEEEETTTTEEEEEEES
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE---eccCcEEEEecCCCcEEEEeec
Confidence 44555554 4789999999999998884 32211 11222333336554433 2477787744 55666555544
Q ss_pred cCcc----------eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCe
Q 017642 257 HDSR----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326 (368)
Q Consensus 257 ~~~~----------i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 326 (368)
.... +..-....++ .++.++.++..+.+ |+.+++.+.... ...+.. ....++..|+.++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC----SS-ECE-CEECCCTEEEEEETTTE
T ss_pred CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec----CCCccC-CceeeCCEEEEEeCCCE
Confidence 3211 1222222345 67777777752555 999999664222 112222 14567788888889999
Q ss_pred EEEEEccCCCC
Q 017642 327 VHVFNLKVNSG 337 (368)
Q Consensus 327 i~iwd~~~~~~ 337 (368)
|..||+++++.
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999999864
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.96 E-value=1.8e-06 Score=75.46 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=126.4
Q ss_pred CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC--------CCCCCCCCcEEEEeCCCCcEEEEEecCCc
Q 017642 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG--------PDPQYPLNKVMIWDDHQSRCIGELSFRSE 177 (368)
Q Consensus 106 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------~d~~~~~~~i~vwd~~~~~~~~~~~~~~~ 177 (368)
+.|.+.|.++.+..-.... +..-... ++.+...++++... ++ ..|.+||..+.+.+.++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~--G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~-----d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG--GFLPNPV-VASDGSFFAHASTVYSRIARGKRT-----DYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEc--cCCCcee-ECCCCCEEEEEeccccccccCCCC-----CEEEEEECccCcEEeEEccCCC
Confidence 5699999887665533332 2222222 33333444444441 23 7999999999999999874333
Q ss_pred --------eeEEEEeeCccEEE----e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-
Q 017642 178 --------VRSVKLRRDRIIVV----L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV- 243 (368)
Q Consensus 178 --------v~~~~~~~~~~~l~----~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i- 243 (368)
...+++++||+++. . +..|.+.|+.+++.+.++.... .......+.+. . .+.| .||....
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~-~~~~---~Dg~~~~v 172 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-F-FMHC---RDGSLAKV 172 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-c-EEEe---ecCceEEE
Confidence 34889999998877 3 7899999999999998887533 22222222221 1 1222 2333322
Q ss_pred -EecCccee-e---eeeccCcceE-EEEECC-CCCEEEEEeCCCcEEEEEECCCC-----ceeEeeEe-----ccCcccE
Q 017642 244 -EHYASKRT-K---FIMAHDSRIA-CFALTQ-DGQLLATSSTKGTLVRIFNTLDG-----TLLQEVRR-----GADRAEI 306 (368)
Q Consensus 244 -~~~~~~~~-~---~~~~~~~~i~-~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~-----~~~~~~~~-----~~~~~~v 306 (368)
.+.+++.. . .+.....++. .-.|.+ +|+++....+ |. |.+.|+... +.+..+.. +...+.+
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 22222111 1 1111001100 003455 8888777776 88 999996432 33322211 1234455
Q ss_pred EEEEEecCCCEEEEEe----------CCCeEEEEEccCCCCCCC
Q 017642 307 YSLAFSSNAQWLAVSS----------DKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s----------~dg~i~iwd~~~~~~~~~ 340 (368)
.-++++++++.+++.. ..+.|.++|..+++....
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~ 294 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK 294 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE
Confidence 5699999999887743 125799999998877654
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.8e-08 Score=86.82 Aligned_cols=247 Identities=16% Similarity=0.087 Sum_probs=169.4
Q ss_pred cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCC-CCCCCCC
Q 017642 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLN 156 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~ 156 (368)
.+-.|.+.|+.+.-+ ..+++.+++ |+.++.|.-.. ....+.+.+. .|-..+.+++.+-++..+.+.+. | .
T Consensus 4 ksymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~D-----h 76 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPD-----H 76 (558)
T ss_pred hhhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcc-----c
Confidence 445788888887654 466888888 99999998554 2233334443 67777778888888888888666 6 9
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEe-eCc----cEEE---eCCcEEEEEcCCCe--EEEEEeccCCCeeEEEEecCC
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLR-RDR----IIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV 226 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~----~~l~---~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~ 226 (368)
.++++|+++-..+..++...--..+.|. ..| .+.+ .++.|.++|-.... ....-..|..+|.++.+.+.+
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 9999999877665444422222222222 122 1222 47899999975433 223335688899999999999
Q ss_pred CeEEEEeecCCCCeEEEEecCc-----ce-e----------eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 227 GSLVLVCPGLQKGQVRVEHYAS-----KR-T----------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 227 ~~~~l~~~g~~dg~i~i~~~~~-----~~-~----------~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
+..+ +....|.|.-|...+ +. + ..+........++.|+|+|..+.+-+.|.. |++++.++
T Consensus 157 Ds~v---SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~Kt 232 (558)
T KOG0882|consen 157 DSAV---SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKT 232 (558)
T ss_pred ccee---eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEecc
Confidence 8522 455678999998774 10 0 112233456789999999999999999999 99999998
Q ss_pred CceeEeeEe-------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 291 GTLLQEVRR-------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 291 ~~~~~~~~~-------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
|+.++.+.. ......-..+.|...|++|+-++-=| |+|.++.++.-.
T Consensus 233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 876655432 00112345678888999999988776 999999887543
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.7e-09 Score=95.40 Aligned_cols=199 Identities=16% Similarity=0.205 Sum_probs=137.0
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-------CcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEE
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-------SRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIF 197 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~ 197 (368)
+|...+..+.--.+..-+++++.| ++|++|.++. ..+..+++ |+.+|.++.|-.+.++++ .||.|+
T Consensus 733 GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 666666666655666667788887 9999998763 23556666 999999999999999998 799999
Q ss_pred EEEcCCCeEEEEEe--ccCCCeeEEEEecC-CCeEEEEeecCCCCeEEEE-ecCcceeeeee-----ccCcceEEEEECC
Q 017642 198 VYNFADLKLLHQIE--TIANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVE-HYASKRTKFIM-----AHDSRIACFALTQ 268 (368)
Q Consensus 198 vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~l~~~g~~dg~i~i~-~~~~~~~~~~~-----~~~~~i~~v~~sp 268 (368)
+||.--++.+..+. ...+.++.+..-++ .+.++++ .++...+|++. .+..+-...++ +...-+++++..+
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA-gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA-GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheee-eccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 99987776655332 12233333433344 3343443 34678889984 44444333333 3445689999999
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEE-EEccCC
Q 017642 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV-FNLKVN 335 (368)
Q Consensus 269 ~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i-wd~~~~ 335 (368)
.|+.|+.+-.+|. |.+.|.++|+.+...+. .......++ .|..+.|+....|.++.| |...++
T Consensus 887 ~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 887 KGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred CcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 9999999999999 99999999998877765 233333333 255566666666777777 765443
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=8.1e-08 Score=79.12 Aligned_cols=239 Identities=11% Similarity=0.231 Sum_probs=144.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCe-EEEEEecCCCcc-e--EEEcccCC------------ceeEEEEEEe--C-CeEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI-F--RRDFERGG------------GIGVVEMLFR--C-NILA 143 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~d~~-i~iw~~~~~~~~-~--~~~~~~~~------------~~~~~~~~~~--~-~~~~ 143 (368)
...+.|+++.|...|.+|++|..++ |.+|.-+..... . ...|+ .| ...+..+.|- . ...+
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 3456899999999999999999555 888876543311 1 11121 11 1123333332 2 3344
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCc------------------------------------------EEEEE-e-cCCcee
Q 017642 144 LVGGGPDPQYPLNKVMIWDDHQSR------------------------------------------CIGEL-S-FRSEVR 179 (368)
Q Consensus 144 ~~s~~~d~~~~~~~i~vwd~~~~~------------------------------------------~~~~~-~-~~~~v~ 179 (368)
++++.+ .+|++|.+.... +.+.+ . |...|.
T Consensus 103 LlstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 103 LLSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred EEecCC------ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 555443 899999764320 00111 1 566788
Q ss_pred EEEEeeCccEEE--eCCcEEEEEcCCCe---EEEEEeccC-----CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc
Q 017642 180 SVKLRRDRIIVV--LEQKIFVYNFADLK---LLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (368)
Q Consensus 180 ~~~~~~~~~~l~--~d~~i~vwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~ 249 (368)
++.++.|...++ .|-.|.+|+++-.. .+..++.|. .-|++..|+|....++..+ +..|.|++.+....
T Consensus 177 SiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl~DlRq~ 254 (460)
T COG5170 177 SISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKLNDLRQS 254 (460)
T ss_pred eeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEehhhhhh
Confidence 899998877776 46689999985321 122222222 2467788998876655443 46899999443321
Q ss_pred e-----ee------------eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEecc----------
Q 017642 250 R-----TK------------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGA---------- 301 (368)
Q Consensus 250 ~-----~~------------~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~---------- 301 (368)
. .+ -+..-...|..+.|+++|+++++-+.- + |+|||++.. .++.++..+.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHHHHhhh
Confidence 1 01 112223468889999999998876654 4 999998754 4555554310
Q ss_pred CcccE---EEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 302 DRAEI---YSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 302 ~~~~v---~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
....| ..+.||-|.+.+++|+..+..-+|-+
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccceeeecc
Confidence 11223 35788888888888887766666653
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=6.5e-06 Score=69.61 Aligned_cols=193 Identities=14% Similarity=0.033 Sum_probs=121.2
Q ss_pred EEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEe-eCccEEE-eCCcEEEEEcCCCeEEEEE
Q 017642 134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQI 210 (368)
Q Consensus 134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~-~d~~i~vwd~~~~~~~~~~ 210 (368)
...|.+ ++.++++.-.. +.|..|+..+++.. .+.... ...+++. +++.+++ ..+.+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTT-----TEEEEEETTTTEEE-EEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeEE-EEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence 345665 55555554444 89999998776543 344333 7777887 7888777 6677888899888665444
Q ss_pred ec-----cCCCeeEEEEecCCCeEEEEeecCCC------CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEE-EeC
Q 017642 211 ET-----IANPKGLCAVSQGVGSLVLVCPGLQK------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SST 278 (368)
Q Consensus 211 ~~-----~~~~v~~~~~~~~~~~~~l~~~g~~d------g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s-~~~ 278 (368)
.. .....+.+++.++|+ +++...+... |.+..++..+ .+..+...-...+.|+|+|+++.|+. -+.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC-eEEEEecCcccccceEECCcchheeecccc
Confidence 33 234567799999987 4444322211 4555555553 33444444556789999999997764 455
Q ss_pred CCcEEEEEECCCCce----eEeeEec-cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 279 KGTLVRIFNTLDGTL----LQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 279 dg~~i~iwd~~~~~~----~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.+. |..+++..... ...+... ...+..-.+++..+|++.++....+.|.+++-+ ++.
T Consensus 155 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 155 NGR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp TTE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred cce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 666 88888863221 1122111 112347889999999988887788899999976 543
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.93 E-value=9.1e-07 Score=89.07 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=124.6
Q ss_pred CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEE-------cccCC-------ceeEEEEEEeC-CeEEEEecCC
Q 017642 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRD-------FERGG-------GIGVVEMLFRC-NILALVGGGP 149 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~-~~~~~~s~~~ 149 (368)
....|++.+++..|.++. .+.|+++|..+........ +. +. -..-..+++++ ++.++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~-gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQ-GGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCC-CChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 457789999888776666 3459989876543211100 00 00 01124677777 5666666555
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEe---------------cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE
Q 017642 150 DPQYPLNKVMIWDDHQSRCIGELS---------------FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI 210 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~ 210 (368)
+ +.|++||..++....... .-.....+++++++..+. .++.|++||+.++......
T Consensus 704 ~-----~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 704 Q-----HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred C-----CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 4 899999987765432110 012356799999986433 4689999999876532111
Q ss_pred ec-------------c--------CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeecc------------
Q 017642 211 ET-------------I--------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH------------ 257 (368)
Q Consensus 211 ~~-------------~--------~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~------------ 257 (368)
.+ . ...-..++++++|+ ++++ ...++.|++|+.....+..+.+.
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 00 0 00124678888886 3443 45689999988876655544321
Q ss_pred --CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642 258 --DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (368)
Q Consensus 258 --~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~ 293 (368)
-.....|+++++|+++++-+.++. |++||+.+++.
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~ 892 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA 892 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence 124678999999998888888888 99999988764
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.9e-07 Score=85.21 Aligned_cols=228 Identities=10% Similarity=0.075 Sum_probs=144.0
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
-+...+|...|.-+.|+.+.+.|.+.+ ++-|.||-+-.+.-.... +.......|.+++|+.++..++-.-.| |
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeD-----G 137 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYED-----G 137 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEcc-----C
Confidence 345679999999999999999999888 666999998766543221 222556678899999888777766665 8
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC-------eEEEEE----eccCCCeeEEE
Q 017642 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-------KLLHQI----ETIANPKGLCA 221 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~-------~~~~~~----~~~~~~v~~~~ 221 (368)
.|.+=.++..+ +.--. .......+.|++|.+.+. .+|.+++||.+.. .+.... ......+..+.
T Consensus 138 avIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 138 AVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred CEEEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 88776654332 22111 223345788999987666 6899999997431 111111 11122344444
Q ss_pred Ee--------cCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--------EEE
Q 017642 222 VS--------QGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------LVR 284 (368)
Q Consensus 222 ~~--------~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--------~i~ 284 (368)
|. |+-..+.++ ..+|.+.| -..+......+ ...-.|..+.|+++|..||.++.+.. .|.
T Consensus 217 w~~g~~~~v~pdrP~lavc---y~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVC---YANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred eccCccccCCCCCCEEEEE---EcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 43 344443333 46788877 22222221122 22356889999999999999987531 155
Q ss_pred EEECCCCceeEeeEeccCcccEEEEEEecCCCEEE
Q 017642 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319 (368)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 319 (368)
++. .-|+.+..++. ....|++++|-..|-.++
T Consensus 293 Fys-p~G~i~gtlkv--pg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 293 FYS-PYGHIVGTLKV--PGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred Eec-cchhheEEEec--CCceeeeeEEcCCceEEE
Confidence 554 45777777776 456788888866554443
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=4e-07 Score=83.85 Aligned_cols=233 Identities=13% Similarity=0.077 Sum_probs=161.0
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC------------CeEEEEecCCCCCCCC
Q 017642 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------------NILALVGGGPDPQYPL 155 (368)
Q Consensus 88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~s~~~d~~~~~ 155 (368)
-.++.|+|.| ++|.|+...|.+-|....+.+ ..++ .|...|..+.|.+ ....+++++..
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~i--qsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~----- 88 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLI--QSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS----- 88 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhhhhhh--hccc-cCccceeEEEeccCCCchhccCccccceeEEecccc-----
Confidence 5567898866 788888888999997766655 4454 5667777777753 24566777766
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeC---c-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---R-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~---~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (368)
|.|.+||...+..+..+. +...+..++|-+. . .+++ ....|.+|+..+|+.............++.+.|-..
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 999999999998888888 7889999998763 3 2333 567999999999999888766666667788877554
Q ss_pred eEEEEeecCCCCeEEE-EecCc-------ceeeeeeccCc-------------------------ceEEEEECCCCCEEE
Q 017642 228 SLVLVCPGLQKGQVRV-EHYAS-------KRTKFIMAHDS-------------------------RIACFALTQDGQLLA 274 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i-~~~~~-------~~~~~~~~~~~-------------------------~i~~v~~sp~g~~l~ 274 (368)
..+.+. | ..|.+.+ .+... +..+.-..|.. ....++|+|.-+.++
T Consensus 169 rh~~~l-~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 169 RHFCVL-G-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred ceEEEE-c-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 434443 3 3555555 33221 22222222221 012356788776444
Q ss_pred EEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC--EEEEEeCCCeEEEEEccC
Q 017642 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~~~ 334 (368)
....... +.|+|++-..++..+.. ..+.+.-+.+-|+++ .|.+.-.||.+.+|-.+.
T Consensus 247 fi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 247 FITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 4555566 99999998888887776 455566677777764 688888999999998765
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.88 E-value=8.1e-07 Score=87.83 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=145.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEE----EecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (368)
...+.|.++.|-++...++.+. +|.|.+. +.......... .-..++.+++|+|+...++-...+ ++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~-----~~ 143 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGE-----GN 143 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCC-----CE
Confidence 4457899999999998887777 5557777 43333333332 334678888888877655544444 78
Q ss_pred EEEEeCCCCcEEEEEe-cC-----CceeEEEEeeCccEEE-eCCcE--E-EEEcCCC-eEEEEEeccCCCeeEEEEecCC
Q 017642 158 VMIWDDHQSRCIGELS-FR-----SEVRSVKLRRDRIIVV-LEQKI--F-VYNFADL-KLLHQIETIANPKGLCAVSQGV 226 (368)
Q Consensus 158 i~vwd~~~~~~~~~~~-~~-----~~v~~~~~~~~~~~l~-~d~~i--~-vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~ 226 (368)
|.+.+ ++.+.+.+.. +. ..-..+-|-.....+= ..|+- + +-|.... .....+. ....-..++|..||
T Consensus 144 l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 144 LLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG 221 (928)
T ss_pred EEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC
Confidence 88876 6777776654 21 2233444443322211 11111 0 0010000 0001122 23344568888888
Q ss_pred CeEEEEeecCC---CCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCceeEeeEec
Q 017642 227 GSLVLVCPGLQ---KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRG 300 (368)
Q Consensus 227 ~~~~l~~~g~~---dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~ 300 (368)
.++++.+.... -..++||++++....+-+.-.+--.+++|.|.|++||+.-. ... |.+|+ ++|-.-.+|...
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~ 299 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLR 299 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecC
Confidence 86555442112 35788899997655555544444567899999999998765 234 88887 566555555442
Q ss_pred --cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 301 --ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 301 --~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
.....|..+.|++|+..||..-.|. |.+|-..+
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 2456899999999999999987666 99998765
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.87 E-value=7.1e-07 Score=72.21 Aligned_cols=190 Identities=11% Similarity=0.002 Sum_probs=115.1
Q ss_pred CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEE---EEeeCccEEE-eCCcEEEEEcCCCeEEEEEecc
Q 017642 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSV---KLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI 213 (368)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~---~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~ 213 (368)
+...++.++.. |.+.+|...+.+....+- +...|.-+ +-+.-...++ .|.++++.+++-+.....+...
T Consensus 83 kc~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 34455666554 999999988665433322 33333322 2222233334 5888888888644322222111
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCCCeEEEEec--Ccc-eeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASK-RTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (368)
Q Consensus 214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~-~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (368)
.-.+..+.+++|++. +++.|. ...|..+.. ++. .+.. .......-.+..|+.....+|++..||+ +.|||++
T Consensus 158 ~~~~ns~~~snd~~~--~~~Vgd-s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR 233 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSW--GSSVGD-SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVR 233 (344)
T ss_pred ccceeeeEEcCCCce--EEEecC-CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEec
Confidence 123678999999985 444453 444444332 232 2221 2223344567889999899999999999 9999998
Q ss_pred CCceeEeeE---eccCcccEEEEEEecCCC--EEEEEeCCCeEEEEEccCCCCC
Q 017642 290 DGTLLQEVR---RGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 290 ~~~~~~~~~---~~~~~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
......... ...|.+.+..+.|++.|. +|...-.-+.+.+-|+++....
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 755433221 233789999999998664 3444444567889998887643
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=3.5e-06 Score=71.11 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=122.3
Q ss_pred CcEEEEeCCCCcEEEEEec-CCc--eeEEEEeeCccEEE--------eCCcEEEEEcC-CCeEEEEEeccCCCeeEEEEe
Q 017642 156 NKVMIWDDHQSRCIGELSF-RSE--VRSVKLRRDRIIVV--------LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVS 223 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~-~~~--v~~~~~~~~~~~l~--------~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~ 223 (368)
....+||..+++....+.. .+. .-.-.|++||+++. ..|.|-|||.+ +.+.+.++..+.-.--.+.+.
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 4578999999998888762 221 22567999999998 25789999998 667777887655444568899
Q ss_pred cCCCeEEEEeecCC-----CCeEE------------EEecCcceeee--e--eccCcceEEEEECCCCCEEEEEeCCCc-
Q 017642 224 QGVGSLVLVCPGLQ-----KGQVR------------VEHYASKRTKF--I--MAHDSRIACFALTQDGQLLATSSTKGT- 281 (368)
Q Consensus 224 ~~~~~~~l~~~g~~-----dg~i~------------i~~~~~~~~~~--~--~~~~~~i~~v~~sp~g~~l~s~~~dg~- 281 (368)
||++.++++- |+- .|..+ ++..+++.+.. + .-|...|+.+++.++|..++..-..|.
T Consensus 108 pDG~tLvVAN-GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 108 PDGETLVVAN-GGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP 186 (305)
T ss_pred CCCCEEEEEc-CCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC
Confidence 9998877765 431 12222 23444454444 3 337778999999999986665544332
Q ss_pred -----EEEEEECCCCceeEeeEec-----cCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCCCC
Q 017642 282 -----LVRIFNTLDGTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARS 341 (368)
Q Consensus 282 -----~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~ 341 (368)
.|-+++ .++.+..+... .-.+.+-+|+++.++.++++.+ ..+.+.+||..+++-....
T Consensus 187 ~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 187 GDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 144443 33333333321 1235799999999999886665 6788999999998766543
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=3.7e-08 Score=89.87 Aligned_cols=239 Identities=14% Similarity=0.145 Sum_probs=155.7
Q ss_pred CEEEEEEcCCCC---EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEe
Q 017642 87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 87 ~v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd 162 (368)
.|-.+.|++... ++++.+...-.+|++.........-+.|+|...++++.|++.. .++++++-| ..+..||
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-----t~vh~wd 143 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-----TYVHAWD 143 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-----ccceeee
Confidence 566677876532 3444445557789986543332222336999999999998754 455666666 8899999
Q ss_pred CCCC-cEEEEEe-cCCceeEEEEee-CccEEE--eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642 163 DHQS-RCIGELS-FRSEVRSVKLRR-DRIIVV--LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 163 ~~~~-~~~~~~~-~~~~v~~~~~~~-~~~~l~--~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
+++. .++..+. -......++|+. ++..++ ..+.|++||++.| ..+..+++|...++.+.|..--...++ +.+
T Consensus 144 ~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~--s~~ 221 (1081)
T KOG0309|consen 144 MRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIM--SSS 221 (1081)
T ss_pred ccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhc--ccC
Confidence 9875 3455544 556677889987 556666 4668999999875 567778888878888887765444344 356
Q ss_pred CCCeEEEEecCcce--eeeeeccCcceEEEEECCCCC--EEEEEeCCCcEEEE---------EECCC-CceeEeeEeccC
Q 017642 237 QKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRI---------FNTLD-GTLLQEVRRGAD 302 (368)
Q Consensus 237 ~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~--~l~s~~~dg~~i~i---------wd~~~-~~~~~~~~~~~~ 302 (368)
.||+|+.|+..... -........+|..-.+-|-|. ++.---.+.. +.+ |+..+ .+.++.|.+ |
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~-v~~~~c~n~d~e~n~~~~~~pVh~F~G--H 298 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM-VPQLRCENSDLEWNVFDLNTPVHTFVG--H 298 (1081)
T ss_pred CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee-eeeccccchhhhhccccCCcceeeecC--c
Confidence 89999998876532 222333445666666666554 2211111112 333 43333 467888988 7
Q ss_pred cccEEEEEEecCC----------CEEEEEeCCCeEEEEEccCC
Q 017642 303 RAEIYSLAFSSNA----------QWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 303 ~~~v~~l~~sp~~----------~~l~s~s~dg~i~iwd~~~~ 335 (368)
...|....|-..+ -.|++-+.|.++++|-+.+.
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 7777777664322 26899999999999998754
No 292
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=3.3e-08 Score=86.00 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=145.5
Q ss_pred EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeC--ccEEE---eCCc
Q 017642 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQK 195 (368)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~---~d~~ 195 (368)
.|. .|...+..+.|+..+..++++++| ..|.+||...++....+. |...|....|-|. .+.++ .||.
T Consensus 137 kL~-~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 137 KLN-KHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred ccc-CCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 343 788899999999999999999998 999999999999888887 8888888788773 23333 6899
Q ss_pred EEEEEcC-CCeE--EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcce---eeeeeccCc---ceEEEE
Q 017642 196 IFVYNFA-DLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKR---TKFIMAHDS---RIACFA 265 (368)
Q Consensus 196 i~vwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~---~~~~~~~~~---~i~~v~ 265 (368)
+++=.+. ++.+ ...+..|.+++..+++-|+....++.+ +.|+.+.- +...... ...-+.+.. ....++
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9988773 3433 344567899999999999998766654 46887775 4333322 222223333 577889
Q ss_pred ECCCCC-EEEEEeCCCcEEEEEECCCCce------eEeeEec----cCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 266 LTQDGQ-LLATSSTKGTLVRIFNTLDGTL------LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 266 ~sp~g~-~l~s~~~dg~~i~iwd~~~~~~------~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
..|... .+++++.|.. +++||.+.-.. +..+..+ .....|++++|+.++.-|.+.-.|-.|+++.-
T Consensus 289 ~~P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred cCCCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 998665 8999999999 99999875321 2222211 13457999999988776666667778999943
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.9e-08 Score=58.21 Aligned_cols=39 Identities=31% Similarity=0.581 Sum_probs=35.9
Q ss_pred CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
++++..+.+ |.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367788888 889999999999999999999999999997
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=3e-06 Score=78.25 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=69.0
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE---------eCCCeEEEEEccCCCCCCCCC
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~ 342 (368)
++|.|...|+ |.++|+.++..-..+.. |.+.|.++.|-...+++-.+ +.-+.+.|-|+++|....--.
T Consensus 439 LvAvGT~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 439 LVAVGTNSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred eEEeecCCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccccccc
Confidence 6788999999 99999999998888887 88899999998665544322 222467899999998776555
Q ss_pred CCCCCCCCccCCCcccccceeeeee
Q 017642 343 PRSTSDPTLPTSSLSFIKGEESIFI 367 (368)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (368)
-.+.+.++...-..+.++.|+...|
T Consensus 516 l~~~despI~~irvS~~~~yLai~F 540 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILF 540 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEe
Confidence 5556666666666666666666544
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=1e-07 Score=81.13 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=97.3
Q ss_pred EeCCeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEecCCceeEEEEeeCccEE-E--eCC---cEEEEEcCCCeE
Q 017642 137 FRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELSFRSEVRSVKLRRDRIIV-V--LEQ---KIFVYNFADLKL 206 (368)
Q Consensus 137 ~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~--~d~---~i~vwd~~~~~~ 206 (368)
.++.+..++.+..+ ....+++.... +....+.....-+++.+..+...+ + .-| .+.+|....+.+
T Consensus 70 ~s~~~~llAv~~~~-----K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 70 TSDSGRLVAVATSS-----KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cCCCceEEEEEeCC-----CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34555555544443 44444444322 233333344444555555443332 2 233 455555554544
Q ss_pred EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (368)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~ 284 (368)
.. +-+|-..+..+++++|++. ++ ++..|+.|++ |......+..+ -+|+..|..++.-++ ..|++++.|++ |+
T Consensus 145 ~~-~lGhvSml~dVavS~D~~~--Ii-taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr 218 (390)
T KOG3914|consen 145 EP-ILGHVSMLLDVAVSPDDQF--II-TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LR 218 (390)
T ss_pred ch-hhhhhhhhheeeecCCCCE--EE-EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EE
Confidence 43 3478889999999999975 33 3679999999 66555555554 579999999998754 46899999999 99
Q ss_pred EEECCCCceeEeeE
Q 017642 285 IFNTLDGTLLQEVR 298 (368)
Q Consensus 285 iwd~~~~~~~~~~~ 298 (368)
+||+.+|+.+.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999998876654
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.9e-08 Score=87.78 Aligned_cols=211 Identities=12% Similarity=0.220 Sum_probs=145.5
Q ss_pred CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-----ceEEEcccCCceeEEEEEEeCCeEEEEecC
Q 017642 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (368)
Q Consensus 75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 148 (368)
..+.....+|...|..++--.+.+-+++++ |++|++|.+..... .+..++. .|...+.++-|-.+...+++++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeecc
Confidence 344556778999999887655555666666 99999999975322 2334554 7888899999988888888876
Q ss_pred CCCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeC--ccEEE----eCCcEEEEEcCCCeEEEEEe-----ccC
Q 017642 149 PDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQIE-----TIA 214 (368)
Q Consensus 149 ~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~--~~~l~----~d~~i~vwd~~~~~~~~~~~-----~~~ 214 (368)
+.|.+||.--++.+..+. ..+.+..+..-++ ..+++ ...+|+++|.+.++-...++ +..
T Consensus 804 -------~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 804 -------GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred -------CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 889999988877666443 3344444444443 33333 47899999999886555553 234
Q ss_pred CCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEE-EECCCCc
Q 017642 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI-FNTLDGT 292 (368)
Q Consensus 215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~i-wd~~~~~ 292 (368)
.-+.++++.+.|+.+.. |-.+|.|.+ +.++++.+..+...+.....++ .|..+.|+....|.+ +.| |-..++.
T Consensus 877 a~~R~iaVa~~GN~lAa---~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgi 951 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAA---ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGI 951 (1034)
T ss_pred hheeEEEeccCcchhhH---HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCe
Confidence 55788999999987443 446788887 7777777776666555555554 355667888888888 888 8766665
Q ss_pred eeEeeE
Q 017642 293 LLQEVR 298 (368)
Q Consensus 293 ~~~~~~ 298 (368)
.....+
T Consensus 952 mh~q~k 957 (1034)
T KOG4190|consen 952 MHLQDK 957 (1034)
T ss_pred eeeccC
Confidence 554444
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.77 E-value=9.5e-06 Score=73.30 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=127.8
Q ss_pred CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec
Q 017642 96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (368)
Q Consensus 96 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~ 174 (368)
++..+++++ ++.+..+|.++++......+. ... ........ +.+++... + +.|..||.++|+.+.++..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~-~~~p~v~~-~~v~v~~~-~-----g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEV-LSPPLVAN-GLVVVRTN-D-----GRLTALDAATGERLWTYSR 173 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--cee-ecCCEEEC-CEEEEECC-C-----CeEEEEEcCCCceeeEEcc
Confidence 355666666 777999998887777654442 211 11112223 34444433 3 8999999999998887763
Q ss_pred CCcee------EEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCC----C------e-eEEEEecCCCeEEEEeec
Q 017642 175 RSEVR------SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN----P------K-GLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 175 ~~~v~------~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~~~l~~~g 235 (368)
..... .... .++.+++ .++.+..+|.++|+.+........ . + ....+ .++.+++ +
T Consensus 174 ~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~---~ 247 (377)
T TIGR03300 174 VTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYA---V 247 (377)
T ss_pred CCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEE---E
Confidence 33221 1122 2344444 578999999999987665432110 0 0 01111 2333333 3
Q ss_pred CCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 236 LQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 236 ~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
+.+|.++.++. +++.+.... .. ....... ++..++.++.+|. |..+|..+++.+...... .......... .
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~-~~-~~~~p~~--~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~ 319 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRD-AS-SYQGPAV--DDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--V 319 (377)
T ss_pred EcCCEEEEEECCCCcEEEeec-cC-CccCceE--eCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--E
Confidence 35778877555 344333332 11 1122222 4567888889999 999999999887665321 1112222222 3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 315 AQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 315 ~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
+..|++++.+|.|+++|..+++..-
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 6688889999999999998887653
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=3.2e-08 Score=57.22 Aligned_cols=38 Identities=34% Similarity=0.614 Sum_probs=35.7
Q ss_pred ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (368)
Q Consensus 249 ~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd 287 (368)
+.+..+.+|...|++|+|+|++.+|++++.|+. |+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 456789999999999999999999999999999 99997
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.75 E-value=1.1e-05 Score=72.93 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=129.1
Q ss_pred CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (368)
Q Consensus 97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~ 175 (368)
+..+.+++ ++.+..+|..+++......+. . .. ....... +..++++.. + +.|..+|..+|+.+......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-~-~~-~~~p~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLD-E-RL-SGGVGAD-GGLVFVGTE-K-----GEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCC-C-Cc-ccceEEc-CCEEEEEcC-C-----CEEEEEECCCCcEeeeeccC
Confidence 44566666 777999998888877665553 2 11 1122233 333444333 3 89999999999998877654
Q ss_pred CceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCee-----EEEEecCCCeEEEEeecCCCCeEEEEe-cC
Q 017642 176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKG-----LCAVSQGVGSLVLVCPGLQKGQVRVEH-YA 247 (368)
Q Consensus 176 ~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~ 247 (368)
+.+.+.....++.+++ .++.|+.||.++|+.+..+........ ...+. + +. +++ +..++.+...+ .+
T Consensus 135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~-v~~--~~~~g~v~ald~~t 209 (377)
T TIGR03300 135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GG-VLV--GFAGGKLVALDLQT 209 (377)
T ss_pred ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CE-EEE--ECCCCEEEEEEccC
Confidence 4444332233555555 689999999999998877654322111 11111 2 22 222 44567776644 44
Q ss_pred cceeeeeeccC----cc------e-EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC
Q 017642 248 SKRTKFIMAHD----SR------I-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (368)
Q Consensus 248 ~~~~~~~~~~~----~~------i-~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 316 (368)
++.+....... .. + ....+ .+..++.++.+|. ++.||..+|+.+...... ...... .++.
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~ 280 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDN 280 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCC
Confidence 54433221100 00 0 11112 3457777888999 999999999887665521 112222 2456
Q ss_pred EEEEEeCCCeEEEEEccCCCCC
Q 017642 317 WLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 317 ~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
.++.++.||.|+.+|..+++..
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEE
Confidence 7777888999999999888643
No 300
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.74 E-value=5.4e-06 Score=75.18 Aligned_cols=217 Identities=14% Similarity=0.182 Sum_probs=118.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~ 164 (368)
.-....+.++|+|+++++++++...||....... ........+.|..++.+.+-... ++|.++.--
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~--------k~~G~g~~~vw~~~n~yAv~~~~------~~I~I~kn~ 97 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN--------KAFGSGLSFVWSSRNRYAVLESS------STIKIYKNF 97 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE--------EEEEE-SEEEE-TSSEEEEE-TT------S-EEEEETT
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc--------cccCceeEEEEecCccEEEEECC------CeEEEEEcC
Confidence 3346789999999999999999988887322211 12234556777775554444332 789996422
Q ss_pred CCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642 165 QSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (368)
Q Consensus 165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~ 242 (368)
+.+....+.....+..+-. |.+++ .++.|.+||.++++.++.+... ++..+.|+++++.+.+++ +..+.
T Consensus 98 ~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~ 168 (443)
T PF04053_consen 98 KNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIY 168 (443)
T ss_dssp EE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEE
T ss_pred ccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEE
Confidence 3333234443333444433 66666 5667999999999999998643 378899999999766654 45677
Q ss_pred EEecCcc------------eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 243 VEHYASK------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 243 i~~~~~~------------~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
|...+.. ....+..-...|.+..|..+ .++..+.. . |+.+ ..|+.- .+.. -..++.=+.
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yllg 239 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLLG 239 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEEE
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEEE
Confidence 7544444 44444443567888889755 44444444 5 7773 445433 3332 234667777
Q ss_pred EecCCCEEEEEeCCCeEEEEEcc
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+.+..+.+.....|+.|..+.+.
T Consensus 240 y~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 240 YLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EETTTTEEEEE-TT--EEEEE--
T ss_pred EEccCCEEEEEECCCCEEEEEEC
Confidence 78877888888888888888764
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=4.4e-07 Score=73.02 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=87.4
Q ss_pred CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECC-C
Q 017642 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-D 269 (368)
Q Consensus 193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp-~ 269 (368)
-+..+.|+++..+.+..-......+.+++-+|..++++ + .|+.||.+.+|+.+. .+...+..|+.+|..+-|+| +
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v-~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV-C-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEE-E-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC
Confidence 34566677654433222222334488888899887733 3 488999999988765 34445789999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEEECCCCceeE------------------e---eEec--cCcccEEEEEEecCCCEEEEEeCCCe
Q 017642 270 GQLLATSSTKGTLVRIFNTLDGTLLQ------------------E---VRRG--ADRAEIYSLAFSSNAQWLAVSSDKGT 326 (368)
Q Consensus 270 g~~l~s~~~dg~~i~iwd~~~~~~~~------------------~---~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg~ 326 (368)
+..|+++++||. +.-||..+ +.+. . +..- .....|+++ .--|..|++|++-+.
T Consensus 236 p~~Lft~sedGs-lw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sinsf--DV~g~~lVcgtd~ea 311 (319)
T KOG4714|consen 236 PEHLFTCSEDGS-LWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSF--DVLGPCLVCGTDAEA 311 (319)
T ss_pred chheeEecCCCc-EEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeee--eccCceEEeccccce
Confidence 569999999999 99999653 2221 0 0000 001123332 334778999998888
Q ss_pred EEEEE
Q 017642 327 VHVFN 331 (368)
Q Consensus 327 i~iwd 331 (368)
|++++
T Consensus 312 Iyl~~ 316 (319)
T KOG4714|consen 312 IYLTR 316 (319)
T ss_pred EEEec
Confidence 88875
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=8e-06 Score=79.17 Aligned_cols=200 Identities=14% Similarity=0.127 Sum_probs=122.4
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eC-CcEEEEEcCC
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LE-QKIFVYNFAD 203 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d-~~i~vwd~~~ 203 (368)
.+...+.++.|..+...++-+..+ |.|.+-|..+......-.....|.+++|+||+.+++ .. +++.+-+ .+
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~ 139 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KD 139 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence 344678888886655444443333 889988887765544444788999999999999888 33 3443322 21
Q ss_pred C------------------------eEEEEEeccC---------------------CCeeEEEEecCCCeEEEEee--cC
Q 017642 204 L------------------------KLLHQIETIA---------------------NPKGLCAVSQGVGSLVLVCP--GL 236 (368)
Q Consensus 204 ~------------------------~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~--g~ 236 (368)
. +....|.+.. +.-..+.|..||+.+.+..- ..
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 1 1111222111 11234788888886544211 22
Q ss_pred CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe---CCCcEEEEEECCCCceeEeeEe--ccCcccEEEEEE
Q 017642 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAF 311 (368)
Q Consensus 237 ~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~ 311 (368)
....|++|+..+..-..-....+-=.+++|-|.|..+++-. .|+. |.+|. ++|-.-..|.. ......|..++|
T Consensus 220 ~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 220 GTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchheeee
Confidence 22789999988543333333334456899999999888753 3556 99998 44433322221 113445899999
Q ss_pred ecCCCEEEE---EeCCCeEEEEEccC
Q 017642 312 SSNAQWLAV---SSDKGTVHVFNLKV 334 (368)
Q Consensus 312 sp~~~~l~s---~s~dg~i~iwd~~~ 334 (368)
+.++..|++ ......|++|-+.+
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecC
Confidence 999999987 44555599998765
No 303
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.65 E-value=0.00012 Score=62.84 Aligned_cols=240 Identities=15% Similarity=0.121 Sum_probs=135.3
Q ss_pred EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccCCceeE----EEEEEeCCeEEEE--ecCCCCC
Q 017642 90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGGGIGV----VEMLFRCNILALV--GGGPDPQ 152 (368)
Q Consensus 90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--s~~~d~~ 152 (368)
.+..+|||+.+.++. ...|.+||..+.....+..+...++..+ ..+..+.++.++. -..--
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa-- 117 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA-- 117 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS--
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC--
Confidence 467789999887643 1228999998887776666642212211 1123333333332 22221
Q ss_pred CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcC-CCeEEEEEe----ccCCCe-eEEEEecC
Q 017642 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFA-DLKLLHQIE----TIANPK-GLCAVSQG 225 (368)
Q Consensus 153 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~-~~~~~~~~~----~~~~~v-~~~~~~~~ 225 (368)
..|.|.|+..++.+.++.-.+...-.-..+++...+ .||.+.-..+. .|+..+... ....++ ..-++...
T Consensus 118 ---~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 118 ---TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp ---EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred ---CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 578888999999888887666443333333443222 79999988886 565543221 111222 22334444
Q ss_pred CCeEEEEeecCCCCeEEEEecCcceeee---eec----------cCcceEEEEECCCCCEEEEEeC---C------CcEE
Q 017642 226 VGSLVLVCPGLQKGQVRVEHYASKRTKF---IMA----------HDSRIACFALTQDGQLLATSST---K------GTLV 283 (368)
Q Consensus 226 ~~~~~l~~~g~~dg~i~i~~~~~~~~~~---~~~----------~~~~i~~v~~sp~g~~l~s~~~---d------g~~i 283 (368)
+..+++. +.+|.|+--+..+..... +.. ..+.-.-+++++..+.|++.-. + ++.|
T Consensus 195 ~~~~~F~---Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 195 GGRLYFV---SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp TTEEEEE---BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred CCeEEEE---ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence 4444433 257887774444322211 110 0122345777776554444322 1 1248
Q ss_pred EEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCC
Q 017642 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~ 340 (368)
-++|+.+++.+.++.. ...+.+|..+.|.+ +|++.+ .++.|.+||..+++....
T Consensus 272 Wv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 272 WVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 8889999999999985 34688999999877 555544 578999999999976543
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=6.8e-06 Score=79.66 Aligned_cols=242 Identities=12% Similarity=0.107 Sum_probs=131.9
Q ss_pred ccccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
.....-.+.|.+++||||++.++..+....-++..........+.+. .........+-|......+-+.. |
T Consensus 103 eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-------g 175 (1265)
T KOG1920|consen 103 EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-------G 175 (1265)
T ss_pred eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecch-------h
Confidence 34455677999999999999998888434333333333333333331 01222333344433332222211 2
Q ss_pred cEEEEeCCCCcE-EEEEecCCceeEEEEeeCccEEE-------eC-CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642 157 KVMIWDDHQSRC-IGELSFRSEVRSVKLRRDRIIVV-------LE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 157 ~i~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~-------~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (368)
.....+....+. .........=..|.|.-||.+++ .+ ..|++||-+ |.+-..-....+.-.+++|-|.|.
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS 254 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC
Confidence 222222111111 11111223345689999998887 25 799999976 544333333344456789999887
Q ss_pred eEEEEeecCCCCeEEEEecCcceeee----eeccCcceEEEEECCCCCEEEE---EeCCCcEEEEEECCCCcee--EeeE
Q 017642 228 SLVLVCPGLQKGQVRVEHYASKRTKF----IMAHDSRIACFALTQDGQLLAT---SSTKGTLVRIFNTLDGTLL--QEVR 298 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~~~~~~~----~~~~~~~i~~v~~sp~g~~l~s---~~~dg~~i~iwd~~~~~~~--~~~~ 298 (368)
.+..+-.-..|+.|.++..++-.... +.....+|..++|+.++.+||+ ...... |++|-+.+..-. +.+.
T Consensus 255 ~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~ 333 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQ 333 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccce-EEEEEecCeEEEEEEEEe
Confidence 54333333456678887777643332 2334445999999999999887 555556 999987764422 2222
Q ss_pred eccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEcc
Q 017642 299 RGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 299 ~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~ 333 (368)
- ..... +.|+|-. ..|..-..+|...++|+.
T Consensus 334 ~--~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 334 F--SQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred c--ccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 1 11111 6777743 233333356665555543
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.59 E-value=3.5e-05 Score=63.42 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=104.1
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE---EEcccCCceeEEEEEEeCCe-------EEEEecCCCCCCC
Q 017642 86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR---RDFERGGGIGVVEMLFRCNI-------LALVGGGPDPQYP 154 (368)
Q Consensus 86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~d~~~~ 154 (368)
..=..++||||+.+||.+. .+.|++||+.....-.. ..+...-...+..+.|-... .+++-.-.
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~----- 118 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR----- 118 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc-----
Confidence 3456789999999999999 66699999864322111 00111112334445443211 22222221
Q ss_pred CCcEEEEeCC-----CCcEEEEEe----cCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecC
Q 017642 155 LNKVMIWDDH-----QSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (368)
Q Consensus 155 ~~~i~vwd~~-----~~~~~~~~~----~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (368)
|.++-|-+. ..+....+. +...|.++.++|..++++..|.-.- +++. -......+.+..+-.+
T Consensus 119 -G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 119 -GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SKASSCGLTAWRILSD 190 (282)
T ss_pred -ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----ccccccCceEEEEcCC
Confidence 666666542 223444444 4678999999999877762111000 0000 0011112222222222
Q ss_pred CCeEEEEeecCCCCeE------EEEecCccee-eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642 226 VGSLVLVCPGLQKGQV------RVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 226 ~~~~~l~~~g~~dg~i------~i~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (368)
..+...+. ...|+.. .++....... .........|..|..||||+.||+...+|. |.+|++.+-+......
T Consensus 191 ~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 191 SPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhcccc
Confidence 22211211 1112111 1111111111 111224567999999999999999999999 9999999877776665
Q ss_pred e
Q 017642 299 R 299 (368)
Q Consensus 299 ~ 299 (368)
.
T Consensus 269 ~ 269 (282)
T PF15492_consen 269 Q 269 (282)
T ss_pred h
Confidence 4
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.7e-07 Score=77.13 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=108.6
Q ss_pred EEEEcC--CCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC-
Q 017642 90 HISFNQ--DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS- 166 (368)
Q Consensus 90 ~~~~s~--~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~- 166 (368)
.++|+- .|-.+++|.+.+|-+-|++++... .| .....|.++.|......+..|.+. |.|..+|++.+
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~q---sf--~sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rn 285 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ---SF--QSKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRN 285 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeeccccc---cc--ccchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecc
Confidence 346653 344566777888999998876543 33 456677888887755555666665 99999999754
Q ss_pred ----cEEEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeE---EEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642 167 ----RCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 167 ----~~~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
.+...+-|...|+++..-. ++.++. .+|+|++||++--++ +..+++|.+....+-++-+.+.-++++ +
T Consensus 286 qG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-V 364 (425)
T ss_pred cCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-c
Confidence 5777788999999998776 565555 689999999987766 888888877665555555544444554 6
Q ss_pred CCCCeEEEEecCcce
Q 017642 236 LQKGQVRVEHYASKR 250 (368)
Q Consensus 236 ~~dg~i~i~~~~~~~ 250 (368)
++|...+||......
T Consensus 365 GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGH 379 (425)
T ss_pred cCeeEEEEEecccCc
Confidence 689999999887543
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=7.2e-06 Score=73.91 Aligned_cols=135 Identities=15% Similarity=0.241 Sum_probs=89.0
Q ss_pred cEEEEEcCCC--eEEEEEeccCCCeeEEEEecCCCeEEEEe--ecCCCCeEEE----EecCcceeeee----eccCcceE
Q 017642 195 KIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVC--PGLQKGQVRV----EHYASKRTKFI----MAHDSRIA 262 (368)
Q Consensus 195 ~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~g~~dg~i~i----~~~~~~~~~~~----~~~~~~i~ 262 (368)
.+.++.+..+ +.+..+....++ .++.|+....+.+... +-+.+|.+.+ +......++.. -.....+.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 4666665443 233333433334 4566776544433332 1234555554 23333222222 24667899
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 263 ~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
+++++|+...|+.|+.||. |.+||...+..... + ..-..+.++|+|+|.++++|+..|.|.+||+.-.
T Consensus 264 ~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999 99999876643322 2 3456789999999999999999999999998654
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=6.7e-07 Score=74.86 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=99.7
Q ss_pred eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-----eeeeeeccCcceEEEEE
Q 017642 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFAL 266 (368)
Q Consensus 192 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~v~~ 266 (368)
.+..|-+-|+++|-. +.|. ....|.+..|...++ ++. .|..+|.|...|...+ -....--|...|+++..
T Consensus 232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n--Lv~-~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN--LVF-NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ccceeEEEEeecccc-cccc-cchhHHHHHhcccCC--eeE-ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 567888888887732 3443 455677777776665 333 4889999988554432 12233458888999887
Q ss_pred CC-CCCEEEEEeCCCcEEEEEECCCCce---eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 267 TQ-DGQLLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 267 sp-~g~~l~s~~~dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
-. ++++|.+.+.+|. |++||++--++ +..+.+|.....-.-+-..+....++++++|-..|||.++.+.-
T Consensus 307 Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 66 7789999999999 99999987666 88888743322333344456677888899999999999997754
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.46 E-value=2.3e-06 Score=70.79 Aligned_cols=199 Identities=14% Similarity=0.208 Sum_probs=126.4
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc-E----EEEEe-------------cCCceeEEEEeeCc--
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-C----IGELS-------------FRSEVRSVKLRRDR-- 187 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~-~----~~~~~-------------~~~~v~~~~~~~~~-- 187 (368)
....+.++.|...+.++++|... |.|.+|.-+... | ..+++ -...|..+.|..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEeccccceEeecCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 44567888999999999999987 899999744321 1 11122 23568888887653
Q ss_pred -cEEE--eCCcEEEEEcCCCeE------------------------------------------EEEE-eccCCCeeEEE
Q 017642 188 -IIVV--LEQKIFVYNFADLKL------------------------------------------LHQI-ETIANPKGLCA 221 (368)
Q Consensus 188 -~~l~--~d~~i~vwd~~~~~~------------------------------------------~~~~-~~~~~~v~~~~ 221 (368)
.+++ .|.+|++|.+..... .+.. ..|...+.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 2344 689999999854310 0001 23444566777
Q ss_pred EecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccC-----cceEEEEECCCCC-EEEEEeCCCcEEEEEECCCC
Q 017642 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHD-----SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG 291 (368)
Q Consensus 222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~-----~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~ 291 (368)
+..|.+.+ + + ..|-.|.+|.... -.+..++.|. .-|++..|+|... .+...+..|. |++-|++..
T Consensus 180 ~NsD~et~-l-S--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~ 254 (460)
T COG5170 180 FNSDKETL-L-S--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQS 254 (460)
T ss_pred ecCchhee-e-e--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhh
Confidence 77777642 2 2 2466666687653 1222334443 3588999999654 6667777888 999999843
Q ss_pred c------eeEeeE--ecc------CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 292 T------LLQEVR--RGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 292 ~------~~~~~~--~~~------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
. .+.+.. +.. -...|..+.|+++|+++++-+. -+|+|||++..+.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 2 111111 100 1236888999999999987654 5799999987543
No 310
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.46 E-value=0.00027 Score=64.20 Aligned_cols=209 Identities=15% Similarity=0.183 Sum_probs=110.0
Q ss_pred EEEcCCCCEEEEEeCC------------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642 91 ISFNQDHGCFAAGTDH------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 91 ~~~s~~g~~l~~~~d~------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (368)
++.+|.|..+|...|. .|+||+... +......+ .. ..++.+.|..+...++-..+ |.+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w--~~-~~iv~~~wt~~e~LvvV~~d------G~v 103 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPW--DS-GRIVGMGWTDDEELVVVQSD------GTV 103 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEE--CC-CCEEEEEECCCCeEEEEEcC------CEE
Confidence 4555666666666544 488887543 33333344 23 68889999776555444332 999
Q ss_pred EEEeCCCCcEEEEE-------e-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCe-EEEEEeccCCCee----------
Q 017642 159 MIWDDHQSRCIGEL-------S-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK-LLHQIETIANPKG---------- 218 (368)
Q Consensus 159 ~vwd~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~-~~~~~~~~~~~v~---------- 218 (368)
+++|+. |+....+ . ....+....+..+|..+. .++.+++.+--... ..+.+........
T Consensus 104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 182 (410)
T PF04841_consen 104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV 182 (410)
T ss_pred EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence 999976 3331111 1 112223334444665555 45555554322211 1111111000000
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (368)
...+..+....+++. .++.+.+ +...... +. ..+++..|++||+|++||.-..+|. +.|.+..-.+.+.++
T Consensus 183 i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 183 IPLLSSDRVVEILLA---NGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEF 254 (410)
T ss_pred ceEeecCcceEEEEe---cCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEe
Confidence 011222322222222 2334442 2222111 11 2357999999999999999999999 999886656666666
Q ss_pred EeccCcccEEEEEEecCCCEEE
Q 017642 298 RRGADRAEIYSLAFSSNAQWLA 319 (368)
Q Consensus 298 ~~~~~~~~v~~l~~sp~~~~l~ 319 (368)
... .......|.|+-+...++
T Consensus 255 ~~~-~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 255 DTD-SKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred ecC-cCCCCcEEEEECCCcEEE
Confidence 653 234667888876654433
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=2.4e-06 Score=78.52 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=146.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC---CeEEEEecCCCCCCCCCcEE
Q 017642 83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d~~~~~~~i~ 159 (368)
.-.+.+.++..+|.|+-+|.++..++.+.|++..-.... -+.|...-.+....|++ .-..+++.+. ..-.
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkai 94 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAI 94 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcCeEEEeccCCCCCce-eeeccCcchhcceecccCCCCceeEEecCc------chhh
Confidence 445678889999999999999988888888875333221 12123344445555554 2345555554 5677
Q ss_pred EEeCCCC--cEEEEE--ecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe-EEEEEeccCCCeeEEEEecCCCeEE
Q 017642 160 IWDDHQS--RCIGEL--SFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 160 vwd~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
+|++... +.+.-+ .|...|+.+.|+++..-+. .|-.++.||+++.. .+.....-......+.|+.-... +
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-v 173 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-V 173 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-h
Confidence 8887532 223222 2889999999999876555 58899999998753 44444444445566888765554 3
Q ss_pred EEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCC-CCEEEEEeCCCcEEEEEECCCCce--eEeeEeccCccc
Q 017642 231 LVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAE 305 (368)
Q Consensus 231 l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~ 305 (368)
+| .+....|.+|+... ..+..+++|...|+.++|..- ...+.+++.||+ |++||..+... -+.+. ...+
T Consensus 174 la--sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~p 247 (1081)
T KOG0309|consen 174 LA--SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFP 247 (1081)
T ss_pred hh--hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCc
Confidence 33 34567788877553 667788889999999988653 236889999999 99999875432 22222 3457
Q ss_pred EEEEEEecCCC
Q 017642 306 IYSLAFSSNAQ 316 (368)
Q Consensus 306 v~~l~~sp~~~ 316 (368)
|+.-.+-|-|.
T Consensus 248 iw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 248 IWRGRYLPFGE 258 (1081)
T ss_pred ceeccccccCc
Confidence 77777777554
No 312
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.44 E-value=1.4e-05 Score=72.26 Aligned_cols=160 Identities=11% Similarity=0.097 Sum_probs=109.1
Q ss_pred cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 230 (368)
.+.++|+++++....+...+.-..-+|+|||+.++ .|| .|+++|+..++.. .+....+.-..-.|+|||+.++
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEE
Confidence 59999999998877777777778889999999888 244 6888898777643 3544444445678999999877
Q ss_pred EEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--EEEEEECCCCceeEeeEeccCcccE
Q 017642 231 LVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGADRAEI 306 (368)
Q Consensus 231 l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~~~~~~~~v 306 (368)
+++ +..|.-.| .+.++.....+......-..-.|+|||++|+..+..+. .|.+.|+.++..++.+.. ....
T Consensus 298 f~S--dr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~ 372 (425)
T COG0823 298 FTS--DRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLN 372 (425)
T ss_pred EEe--CCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc---cccC
Confidence 664 45565555 55556555555544444347789999998887774321 167777776665444442 3344
Q ss_pred EEEEEecCCCEEEEEe
Q 017642 307 YSLAFSSNAQWLAVSS 322 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s 322 (368)
..-.|.++|+.++..+
T Consensus 373 e~ps~~~ng~~i~~~s 388 (425)
T COG0823 373 ESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCCcCCCCceEEEec
Confidence 5667788887766543
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.42 E-value=6.7e-05 Score=67.92 Aligned_cols=174 Identities=12% Similarity=0.116 Sum_probs=111.8
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-----eC--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-----LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-----~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (368)
..+.+-|-. +.....+. ....+..-+|++++..++ .. ..++++|+.+++....+. ..+......|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 566666644 66666665 566777889999998876 22 359999999887665554 344445678999999
Q ss_pred eEEEEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC-c-EEEEEECCCCceeEeeEeccCc
Q 017642 228 SLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-T-LVRIFNTLDGTLLQEVRRGADR 303 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~ 303 (368)
.+++.. ..||...| .+..++....+....+.-..-.|+|||++|+..+..+ . .|.+.|+..+.. ..+.. ..
T Consensus 251 ~l~f~~--~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~ 325 (425)
T COG0823 251 KLAFSS--SRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SG 325 (425)
T ss_pred EEEEEE--CCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cC
Confidence 866654 45676666 4555555555554444444678999999877665543 3 156666655554 33332 11
Q ss_pred ccEEEEEEecCCCEEEEEeC-CCe--EEEEEccCCC
Q 017642 304 AEIYSLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS 336 (368)
Q Consensus 304 ~~v~~l~~sp~~~~l~s~s~-dg~--i~iwd~~~~~ 336 (368)
+.-..-.|+|||++|+..+. +|. |.+.|+.++.
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 22227789999999887764 344 6666665554
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.39 E-value=0.0001 Score=68.37 Aligned_cols=166 Identities=10% Similarity=0.028 Sum_probs=106.5
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-e------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (368)
+.+.+.|..+.+....+...+....+.++++|++++ . ..++...+..+...+..+.... ...+.++|+.
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~----iea~vkdGK~ 290 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR----IEEAVKAGKF 290 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----HHHhhhCCCE
Confidence 667788888888888887777778889999998887 2 2234444333222222221110 1134457775
Q ss_pred EEEEeecCCCCeEEEEecCc-----ceeeeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCce---------
Q 017642 229 LVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL--------- 293 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~--------- 293 (368)
.++ + ++.|.+.+... ..+...-.-......|.++|||+++++++. +.. |.|.|+.+.+.
T Consensus 291 ~~V---~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 291 KTI---G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred EEE---C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence 443 1 45677744333 223332233445688999999998776665 667 99999987553
Q ss_pred ---eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 294 ---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 294 ---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
+.+...+ ..-...+|.++|....+--.|..|..|++.+
T Consensus 365 ~~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333331 2345778999998888888899999999987
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.39 E-value=0.00013 Score=66.38 Aligned_cols=220 Identities=12% Similarity=0.105 Sum_probs=121.3
Q ss_pred CEEEEEe-CCeEEEEEecCCCcceEEEcccCCce--------e-EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (368)
Q Consensus 98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~ 167 (368)
..+.+++ ++.+.-+|.++++......+. .... . ........+.+ +++. .+ +.+.-+|.++|+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~v-~v~~-~~-----g~l~ald~~tG~ 141 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLS-EKDGWFSKNKSALLSGGVTVAGGKV-YIGS-EK-----GQVYALNAEDGE 141 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCC-CcccccccccccccccccEEECCEE-EEEc-CC-----CEEEEEECCCCC
Confidence 3444444 566777777777766655543 1000 0 01122233333 3333 33 899999999999
Q ss_pred EEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCe-----eEEEEecCCCeEEEEeecCCCCe
Q 017642 168 CIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQ 240 (368)
Q Consensus 168 ~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~~~g~~dg~ 240 (368)
.+.+....+.+.+--.-.++.+++ .++.++.+|.++|+.+..+....... ....+. +..+++ +..+|.
T Consensus 142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~---~~~~g~ 216 (394)
T PRK11138 142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIV---GGDNGR 216 (394)
T ss_pred CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEE---EcCCCE
Confidence 988877444443322223555555 57899999999999988775321110 111111 222222 335666
Q ss_pred EEE-EecCcceeeeeeccC----c---ceEEEEECC--CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 241 VRV-EHYASKRTKFIMAHD----S---RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 241 i~i-~~~~~~~~~~~~~~~----~---~i~~v~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
+.. +..+++.+....... . ....+.-+| .+..++.++.+|. +..+|..+|+.+...... ....+.
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~ 291 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA 291 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE
Confidence 665 444444333221100 0 001111122 2446667778898 999999999877654421 112222
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.++..|+.++.+|.|..+|.++++.
T Consensus 292 --~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 292 --VDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred --EECCEEEEEcCCCeEEEEECCCCcE
Confidence 2456677778899999999988764
No 316
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.36 E-value=3.4e-06 Score=68.04 Aligned_cols=72 Identities=17% Similarity=0.375 Sum_probs=59.5
Q ss_pred ceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEec-CCCEEEEEeCCCeEEEEEccC
Q 017642 260 RIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 260 ~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~ 334 (368)
.|.+++-+|..+ ++++|+.||. +-+||.++...... +.. |+..|+.+-|+| ++..|.++++||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488999998655 7778888998 99999998754433 333 889999999998 567899999999999999875
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.35 E-value=0.0002 Score=60.14 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=106.7
Q ss_pred CCcEEEEeCCCCcEEEEEecCC---ceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 155 LNKVMIWDDHQSRCIGELSFRS---EVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 155 ~~~i~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
+|.|..||..+|+.+....... ...+..+..++.+++ .++.|+.||..+|+.+..+.. ...+.... ..+++.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 3899999999999999887422 222223435565555 689999999999999888865 33322222 2344444
Q ss_pred EEEeecCCCCeEEEEe-cCcceeeee-eccC---cceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc
Q 017642 230 VLVCPGLQKGQVRVEH-YASKRTKFI-MAHD---SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~-~~~~~~~~~-~~~~---~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~ 304 (368)
+++. .++.++.++ .+++.+... .... ..........++..++.+..++. |..+|+++|+.+..+.......
T Consensus 80 ~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred cccc---ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence 4433 466777755 666666553 2221 11122222224778888888898 9999999999988877632111
Q ss_pred --c------EEEEEEecCCCEEEEEeCCCe-EEEEEccCCC
Q 017642 305 --E------IYSLAFSSNAQWLAVSSDKGT-VHVFNLKVNS 336 (368)
Q Consensus 305 --~------v~~l~~sp~~~~l~s~s~dg~-i~iwd~~~~~ 336 (368)
. +..-....++ .++.++.++. +.+ |+.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~ 194 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE 194 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC
Confidence 1 1222222344 6666666775 555 888887
No 318
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.34 E-value=0.00073 Score=59.57 Aligned_cols=216 Identities=13% Similarity=0.215 Sum_probs=117.1
Q ss_pred eEEEEEecCCCcceEEEcccCCceeEEE---EEEeC-----CeEEEEecCCC----CCCCCCcEEEEeCCCC-----c--
Q 017642 107 GFRIYNCDPFREIFRRDFERGGGIGVVE---MLFRC-----NILALVGGGPD----PQYPLNKVMIWDDHQS-----R-- 167 (368)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~s~~~d----~~~~~~~i~vwd~~~~-----~-- 167 (368)
.|++.|-.+.+......+. ....+.+ +.+.. ...++++.+.. ..-..|.|.++++... +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4777777666655555553 2333333 33332 23333332211 1011288999998884 2
Q ss_pred EEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCe-EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE--
Q 017642 168 CIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-- 243 (368)
Q Consensus 168 ~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-- 243 (368)
.+......+.|++++-- ++.+++ .++.|++|++...+ ....- ........+++...++.++ + |.....+.+
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~-~~~~~~~i~sl~~~~~~I~--v-gD~~~sv~~~~ 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKA-FYDSPFYITSLSVFKNYIL--V-GDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEE-EE-BSSSEEEEEEETTEEE--E-EESSSSEEEEE
T ss_pred EEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhh-eecceEEEEEEeccccEEE--E-EEcccCEEEEE
Confidence 22333478999999877 445555 79999999997776 33322 2333334455555566433 3 334444544
Q ss_pred EecCcceeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-------Cc-eeEeeEeccCcccEEEE---E
Q 017642 244 EHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT-LLQEVRRGADRAEIYSL---A 310 (368)
Q Consensus 244 ~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-------~~-~~~~~~~~~~~~~v~~l---~ 310 (368)
|+.....+..+.. ....++++.|-.+++.++.+..+|. |.++.... +. .+...........|+++ .
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 6665554444432 3445888888866679999999999 99998752 22 22222111123467777 5
Q ss_pred Eec--CCC------EEEEEeCCCeEEEE
Q 017642 311 FSS--NAQ------WLAVSSDKGTVHVF 330 (368)
Q Consensus 311 ~sp--~~~------~l~s~s~dg~i~iw 330 (368)
+.| .+. .++.++.+|.|.+.
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEEE
Confidence 445 222 47778889988843
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00038 Score=65.63 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=126.4
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCC
Q 017642 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~ 164 (368)
.|.| |++.+..++.|+ ++.|.+++-. ......+. .....+....+.- +..++++.+.|..-....|+||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS---FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc---ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4544 568888999999 8888777632 22213333 3333334444443 4356666555522111269999986
Q ss_pred CC------cEE---EEEe-----cCCceeEEEEeeCccEEE---eCCcEEEEEc---C-CCeEEEEEeccCCCeeEEEEe
Q 017642 165 QS------RCI---GELS-----FRSEVRSVKLRRDRIIVV---LEQKIFVYNF---A-DLKLLHQIETIANPKGLCAVS 223 (368)
Q Consensus 165 ~~------~~~---~~~~-----~~~~v~~~~~~~~~~~l~---~d~~i~vwd~---~-~~~~~~~~~~~~~~v~~~~~~ 223 (368)
.- .++ +.+. ...++.+++++.+-+.++ .||.|..+.= + .|...........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 32 233 2222 245788899999877776 6899888842 1 122223333456789999999
Q ss_pred cCCCeEEEEeecCCCCeEEEEecCcce--eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642 224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 224 ~~~~~~~l~~~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (368)
.++...+++++ -..|.++...++. ...+..|...+.|..+++....+++++..+ |.+||....++...|.
T Consensus 181 ~d~~s~lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence 99988544442 4567777766655 455778888999999987555466666554 8999987666555666
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.31 E-value=1.7e-05 Score=74.75 Aligned_cols=177 Identities=17% Similarity=0.281 Sum_probs=119.4
Q ss_pred CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-c
Q 017642 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F 174 (368)
Q Consensus 97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~ 174 (368)
+..++.|+ ...+..+|+.+.+......+. ...+.-|.. ++..+.+|... |+|.+-|.++.+.++++. |
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR~--Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMRY--NNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeecc---CCceEEEEe--cCcEEEeeccc-----ceEEeecCCcCceeeeeecc
Confidence 34455555 666777888776665444442 222444444 44555555555 999999999999999999 9
Q ss_pred CCceeEEEEeeCccEEE----------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642 175 RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~ 244 (368)
.+.|.++....+-.+-+ .|.-|+|||++..+.+.-+.-+.++ .-+.|.|.-...++++ +..|...+-
T Consensus 217 s~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~v 293 (1118)
T KOG1275|consen 217 SGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFV 293 (1118)
T ss_pred ccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeec
Confidence 99998877654322221 4888999999988877666554444 3467777765544443 356777773
Q ss_pred e-c--Cc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642 245 H-Y--AS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (368)
Q Consensus 245 ~-~--~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd 287 (368)
+ . .. ..+..+......+..+.++++|..|+.|..+|. |.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 3 2 11 222333344556999999999999999999999 99996
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.2e-05 Score=64.27 Aligned_cols=243 Identities=10% Similarity=0.073 Sum_probs=131.8
Q ss_pred cccccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYP 154 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~ 154 (368)
......|...|..++|+|..+ ++..++ ++.|+|.|+++...... +. ....+++++|+-+. .++.+|...
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss--y~--a~~~~wSC~wDlde~h~IYaGl~n---- 257 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS--YI--AYNQIWSCCWDLDERHVIYAGLQN---- 257 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh--ee--ccCCceeeeeccCCcceeEEeccC----
Confidence 346677888999999999877 667777 88899999987665533 32 22667777776543 455555555
Q ss_pred CCcEEEEeCCCCc-EEEEEe---cCCceeEEEEe------eCccEEE-eCCcEEEEEcCC--CeEEEEEec-cCCCeeEE
Q 017642 155 LNKVMIWDDHQSR-CIGELS---FRSEVRSVKLR------RDRIIVV-LEQKIFVYNFAD--LKLLHQIET-IANPKGLC 220 (368)
Q Consensus 155 ~~~i~vwd~~~~~-~~~~~~---~~~~v~~~~~~------~~~~~l~-~d~~i~vwd~~~--~~~~~~~~~-~~~~v~~~ 220 (368)
|.|.|||++..+ .+.++. ...+|..++.- +.|-+++ .--.+..|++.- +....+++. ..+....+
T Consensus 258 -G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 258 -GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM 336 (463)
T ss_pred -ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee
Confidence 999999988653 222222 22334443322 2233333 333444555421 111111211 12333334
Q ss_pred EEecCCCeEEEEeecCCC-----CeE--EEEecCcceeeeee-cc-Ccc------eEEEEECCCCCEEEEEeCCCcEEEE
Q 017642 221 AVSQGVGSLVLVCPGLQK-----GQV--RVEHYASKRTKFIM-AH-DSR------IACFALTQDGQLLATSSTKGTLVRI 285 (368)
Q Consensus 221 ~~~~~~~~~~l~~~g~~d-----g~i--~i~~~~~~~~~~~~-~~-~~~------i~~v~~sp~g~~l~s~~~dg~~i~i 285 (368)
.+.+..+++++.+ -+.- ..+ +++..++..+...+ .+ ... -..+.-.++.++|+.-+.+...+.+
T Consensus 337 qy~~~snh~l~ty-Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil 415 (463)
T KOG1645|consen 337 QYHGVSNHLLLTY-RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL 415 (463)
T ss_pred eecCccceEEEEe-cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence 4444445544433 1110 011 22333333322211 11 110 0112223455665554444333999
Q ss_pred EECCCCceeEeeEeccCcccEEEEEEec-C-CCEEEEEeCCCeEEEEEccC
Q 017642 286 FNTLDGTLLQEVRRGADRAEIYSLAFSS-N-AQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~sp-~-~~~l~s~s~dg~i~iwd~~~ 334 (368)
||..+++.++++.. ..+|.+++... + +.+|+.-. |..++||..+.
T Consensus 416 ~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 416 QDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 99999999999985 46888887654 3 34666554 55699987654
No 322
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=0.00068 Score=58.61 Aligned_cols=211 Identities=15% Similarity=0.083 Sum_probs=126.4
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEE-EEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642 92 SFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (368)
Q Consensus 92 ~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~ 168 (368)
.|.++...|.-.. .+.|.-|+..+++.. .+ .....+.+. ..+..+.++++ . ..+.+++.+++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~--~~p~~~~~~~~~d~~g~Lv~~-~-------~g~~~~~~~~~~~ 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR---VF--PSPGGFSSGALIDAGGRLIAC-E-------HGVRLLDPDTGGK 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE---EE--ECCCCcccceeecCCCeEEEE-c-------cccEEEeccCCce
Confidence 5778888776666 555888886644332 22 122223333 33444444444 3 4577888766655
Q ss_pred EEEEe------cCCceeEEEEeeCccEEEeC--------------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642 169 IGELS------FRSEVRSVKLRRDRIIVVLE--------------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 169 ~~~~~------~~~~v~~~~~~~~~~~l~~d--------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (368)
+..+. .....+.+...|+|.+.+.+ |.|+.+|. .+..++.+..+-..-+.++|+||++.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 33332 12456688889999888822 22444443 45555555544444567999999998
Q ss_pred EEEEeecCCCCeEEEEecC---c----ce-eeeeeccCcceEEEEECCCCCEEEEEeCCC-cEEEEEECCCCceeEeeEe
Q 017642 229 LVLVCPGLQKGQVRVEHYA---S----KR-TKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRR 299 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i~~~~---~----~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~ 299 (368)
++++= +..+.|.-+... + +. ...+....+..-.++...+|.+.+++..+| . |.+|+.. |+++..+..
T Consensus 177 ly~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 177 LYVAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence 77653 344556553332 1 11 112223445566788888998776555555 6 9999976 999988886
Q ss_pred ccCcccEEEEEEe-cCCCEEEEEe
Q 017642 300 GADRAEIYSLAFS-SNAQWLAVSS 322 (368)
Q Consensus 300 ~~~~~~v~~l~~s-p~~~~l~s~s 322 (368)
. ...+.+++|- ++.+.|...+
T Consensus 253 P--~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 253 P--VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred C--CCCCccceEeCCCcCEEEEEe
Confidence 3 3678888886 4555554443
No 323
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.29 E-value=0.0014 Score=60.09 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=126.5
Q ss_pred CEEEEEEcCCCCEEEEEe--CCe----EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC------
Q 017642 87 TLLHISFNQDHGCFAAGT--DHG----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP------ 154 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~--d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~------ 154 (368)
.+....++|||++||.+- .|. ++++|+++++... ..+. ......+.|.+++..++....+....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344678999999998775 222 8999998874432 2221 11112277777744333322221111
Q ss_pred CCcEEEEeCCCCcE--EEEEe--cCCc-eeEEEEeeCccEEE------eC-CcEEEEEcCCC----eEEEEEeccCCCee
Q 017642 155 LNKVMIWDDHQSRC--IGELS--FRSE-VRSVKLRRDRIIVV------LE-QKIFVYNFADL----KLLHQIETIANPKG 218 (368)
Q Consensus 155 ~~~i~vwd~~~~~~--~~~~~--~~~~-v~~~~~~~~~~~l~------~d-~~i~vwd~~~~----~~~~~~~~~~~~v~ 218 (368)
...|+.|.+.+... ...+. .... ...+..++|+++++ .+ ..+++.|+..+ .....+......+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 35689999887643 24444 2233 66888999999887 24 57899998764 23333333333333
Q ss_pred EEEEecCCCeEEEEeec-CCCCeEEEEecCc-c---eeeeeeccCc--ceEEEEECCCCCEEE-EEeCCCc-EEEEEECC
Q 017642 219 LCAVSQGVGSLVLVCPG-LQKGQVRVEHYAS-K---RTKFIMAHDS--RIACFALTQDGQLLA-TSSTKGT-LVRIFNTL 289 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~-~---~~~~~~~~~~--~i~~v~~sp~g~~l~-s~~~dg~-~i~iwd~~ 289 (368)
...-+. ++.+++.+.. ..++.|..-+... . ....+..+.. .+..+.. .+.+|+ ....++. .|+++++.
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 222222 5555555421 2234443322222 2 1224455555 3555554 444444 4444442 28999988
Q ss_pred CCceeEeeEeccCcccEEEEEEecCCCEEE-E-Ee--CCCeEEEEEccCCCC
Q 017642 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLA-V-SS--DKGTVHVFNLKVNSG 337 (368)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s-~s--~dg~i~iwd~~~~~~ 337 (368)
.+.....+... ..+.|..+...+++..+. . .+ .-++++.||+.+++.
T Consensus 358 ~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 358 DGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp -TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 45555555543 234566666666665433 2 22 346788899888764
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.28 E-value=0.00036 Score=62.36 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=128.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCC----------------ceeEEEEEEeCCeEEEEecC
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG----------------GIGVVEMLFRCNILALVGGG 148 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~s~~ 148 (368)
...+....|||+|+.++...++.|.+++...+... ..+.. +. -..-..+.|+|++..++...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~-~lT~d-g~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQET-QLTTD-GEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEE-ESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeE-Eeccc-cceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 45788899999999999999999999987654221 11111 10 01113455666655444332
Q ss_pred CCCC------------------------C-------CCCcEEEEeCCCCcEEE-EEe-----cCCceeEEEEeeCcc-EE
Q 017642 149 PDPQ------------------------Y-------PLNKVMIWDDHQSRCIG-ELS-----FRSEVRSVKLRRDRI-IV 190 (368)
Q Consensus 149 ~d~~------------------------~-------~~~~i~vwd~~~~~~~~-~~~-----~~~~v~~~~~~~~~~-~l 190 (368)
.|.. | ..-.+.|+|+.+++... ... ....+..+.|.+++. ++
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 2210 0 01145667777665421 111 344678899999988 44
Q ss_pred E--e-----CCcEEEEEcCCCeEEEEEec-cCCCe---eEEEEe-cCCCeEEEEeecCCCCeEEE--EecCcceeeeeec
Q 017642 191 V--L-----EQKIFVYNFADLKLLHQIET-IANPK---GLCAVS-QGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMA 256 (368)
Q Consensus 191 ~--~-----d~~i~vwd~~~~~~~~~~~~-~~~~v---~~~~~~-~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~ 256 (368)
+ . ...+.++|..++++...+.. ....+ ....+. +++..++.+.. .+|.-+| .+..+.....+..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~--~~G~~hly~~~~~~~~~~~lT~ 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE--RDGYRHLYLYDLDGGKPRQLTS 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE--TTSSEEEEEEETTSSEEEESS-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE--cCCCcEEEEEcccccceecccc
Confidence 4 2 23677888877755433322 22222 245554 77877666653 6666555 5666666667776
Q ss_pred cCcceEE-EEECCCCCEE-EEEeCCC--c-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642 257 HDSRIAC-FALTQDGQLL-ATSSTKG--T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 257 ~~~~i~~-v~~sp~g~~l-~s~~~dg--~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 321 (368)
....|.. +.++++++.| +++..++ . .|..-++..+..+..+... .+.-..+.|||+|++++-.
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~--~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE--DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT--SSTTEEEEE-TTSSEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC--CCCceEEEECCCCCEEEEE
Confidence 6677755 6788887744 4555422 2 1555566623444455542 2222699999999988754
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.7e-05 Score=68.92 Aligned_cols=208 Identities=13% Similarity=0.172 Sum_probs=138.0
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC--C-cEEEEEe-cCCceeEEEEeeCccEEEe----CCcEEEE
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--S-RCIGELS-FRSEVRSVKLRRDRIIVVL----EQKIFVY 199 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~--~-~~~~~~~-~~~~v~~~~~~~~~~~l~~----d~~i~vw 199 (368)
|+..+..+... ...++.+++.| |.++.|--.. + +.+..+. |-..|.+++.+-++.++.+ |..++++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeee-hhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 34444444333 33445566666 9999998433 1 2233333 7788999999999988882 8899999
Q ss_pred EcCCCeEEEEEeccCCCeeE-EEEecCCCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECCCCCEEEE
Q 017642 200 NFADLKLLHQIETIANPKGL-CAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLAT 275 (368)
Q Consensus 200 d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp~g~~l~s 275 (368)
|+++...+..++...-+-.+ +..++....-.++.+.-.++.+.+.+..+. ......-|..+|.++.+.+-+..+++
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 99876655433322222222 222333333345555567788888665442 22334569999999999999999999
Q ss_pred EeCCCcEEEEEECCC------CceeEeeEe-------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642 276 SSTKGTLVRIFNTLD------GTLLQEVRR-------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 276 ~~~dg~~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
....|- |.-|.... .+....++. ........++.|+|+|..+.+-+.|..|+++++.+++-..+..
T Consensus 162 iD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 162 IDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999998 99998762 111111110 0134567899999999999999999999999999998765544
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.25 E-value=0.00056 Score=62.20 Aligned_cols=221 Identities=12% Similarity=0.045 Sum_probs=122.6
Q ss_pred CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (368)
Q Consensus 97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~ 175 (368)
+..+..++ ++.+..+|.++++......+. ... ....... ++.+++... + +.|.-+|.++|+.+..+...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~-~ssP~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEA-LSRPVVS-DGLVLVHTS-N-----GMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC--Cce-ecCCEEE-CCEEEEECC-C-----CEEEEEEccCCCEeeeecCC
Confidence 34455555 777999998888887665542 111 1111122 334444433 2 89999999999998887632
Q ss_pred Cce------eEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCC----C---eeEEEEec--CCCeEEEEeecCCC
Q 017642 176 SEV------RSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN----P---KGLCAVSQ--GVGSLVLVCPGLQK 238 (368)
Q Consensus 176 ~~v------~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~~~l~~~g~~d 238 (368)
... ...... ++..++ .++.+..+|.++|+.+........ . ...+..+| .++.+++ ++.+
T Consensus 190 ~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~---~~~~ 265 (394)
T PRK11138 190 VPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA---LAYN 265 (394)
T ss_pred CCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE---EEcC
Confidence 211 111122 334444 588899999999987665432110 0 00011111 2333333 2246
Q ss_pred CeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCE
Q 017642 239 GQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317 (368)
Q Consensus 239 g~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 317 (368)
|.+.. +..+++.+..... .....+.. .+..|+.++.+|. |..+|..+|+.+-......+ ....+... .+..
T Consensus 266 g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~ 337 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGY 337 (394)
T ss_pred CeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCE
Confidence 66666 4444444332211 11112222 4557777888999 99999999987654432111 11222222 2456
Q ss_pred EEEEeCCCeEEEEEccCCCCCC
Q 017642 318 LAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 318 l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
|+.++.||.|++.|..+++..-
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEE
Confidence 7788899999999999887543
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00012 Score=68.43 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=109.5
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecC-----CC
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-----VG 227 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~ 227 (368)
|.|++++.. +.....+.|... ..+|.+++ .||+|.|..+-+.+...++. ...++.+++++|+ .+
T Consensus 59 g~v~~~~~~-~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 59 GAVYLTTCQ-GNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred ceEEEEecC-Cccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhh
Confidence 888888843 333333334433 56788888 58999999988877766664 4568889999998 22
Q ss_pred eEEEEeecCCCCeEEEEecC----cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--
Q 017642 228 SLVLVCPGLQKGQVRVEHYA----SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-- 301 (368)
Q Consensus 228 ~~~l~~~g~~dg~i~i~~~~----~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-- 301 (368)
. + + +|+.-| +.+...+ ...+ .+....++|.++.| .|.++|-++.+| |+|||+.+++.+..+....
T Consensus 131 ~-f-v-~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 131 Q-F-V-SGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPTRQRLTNIPPPSQS 201 (846)
T ss_pred h-e-e-ecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC--cEEEeccccceeeccCCCCCC
Confidence 2 2 3 366677 5553322 2222 45667789999999 688999999998 7999999988876665421
Q ss_pred --CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 302 --DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 302 --~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
....-..+.|.++.++++ |...+|+|..++.+.
T Consensus 202 ~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~~~~ 236 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDRLVI--GWGDSVKICSIKKRS 236 (846)
T ss_pred CCcccCCCceEecCCCeEEE--ecCCeEEEEEEeccc
Confidence 111234678877655443 345579999998443
No 328
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.20 E-value=0.00094 Score=58.88 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=105.4
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceeEEEEee---C----ccEEE--e----------C-CcEEEEEcCCC----eEEEE
Q 017642 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRR---D----RIIVV--L----------E-QKIFVYNFADL----KLLHQ 209 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~---~----~~~l~--~----------d-~~i~vwd~~~~----~~~~~ 209 (368)
..|++.|..+.+.+..+. ....+.+++.-. + ..+++ . . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999988888887776 555666665433 1 34444 0 2 88999999873 22222
Q ss_pred E--eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce-eeeeeccC--cceEEEEECCCCCEEEEEeCCCcEEE
Q 017642 210 I--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD--SRIACFALTQDGQLLATSSTKGTLVR 284 (368)
Q Consensus 210 ~--~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~--~~i~~v~~sp~g~~l~s~~~dg~~i~ 284 (368)
+ ....++|.+++-- ++. ++++ .++.|.++...... +.....+. ..+.++.. .+.+++.|..... |.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~---~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~s-v~ 152 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVA---VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKS-VS 152 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEE---ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSS-EE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEe---ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccC-EE
Confidence 2 2346677766554 444 3333 24788886665544 44333332 25566655 4668999988777 88
Q ss_pred EEECCC-CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 285 IFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 285 iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
++.... ...+..+........++++.|-.|++.++.+..+|.|.++....
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 775443 33344444433455789999987778899999999999999964
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=1.5e-06 Score=81.42 Aligned_cols=212 Identities=13% Similarity=0.109 Sum_probs=136.9
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (368)
Q Consensus 81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (368)
.+.|+..-+|++|+-+.++|++|. .+.|++|++.++... .... .|...+..+..+.++....+.+.- +.--..
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~n-cH~SavT~vePs~dgs~~Ltsss~---S~Plsa 1170 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVN-CHQSAVTLVEPSVDGSTQLTSSSS---SSPLSA 1170 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--cccc-ccccccccccccCCcceeeeeccc---cCchHH
Confidence 345677889999999999999999 777999999887766 3343 678888888777666544433221 113567
Q ss_pred EEeCCC-CcEEEEEecCCceeEEEEeeCccE--EE-eCCcEEEEEcCCCeEEEEE-e---ccCCCeeEEEEecCCCeEEE
Q 017642 160 IWDDHQ-SRCIGELSFRSEVRSVKLRRDRII--VV-LEQKIFVYNFADLKLLHQI-E---TIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 160 vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~--l~-~d~~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~l 231 (368)
+|++.. +...+.|. .-.++.|+..... +. ......+||++++..+.++ . +....-++..|+|+.+ +
T Consensus 1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~---L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT---L 1244 (1516)
T ss_pred HhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc---e
Confidence 899753 44444443 2346667664322 22 4568899999998776653 2 1222336788999987 3
Q ss_pred EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
+. +||. +|+... ..+..+......+ .=.|+|.|..++.-+ .|||+++.+.++.+..- .-..+.
T Consensus 1245 Il---ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L----dqc~Vt 1308 (1516)
T KOG1832|consen 1245 IL---NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL----DQCAVT 1308 (1516)
T ss_pred Ee---eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCccc----cceEEE
Confidence 32 4663 376654 3344444333222 235899998776533 69999999888776642 235677
Q ss_pred EecCCCEEEE
Q 017642 311 FSSNAQWLAV 320 (368)
Q Consensus 311 ~sp~~~~l~s 320 (368)
|+..|..++.
T Consensus 1309 FNstG~VmYa 1318 (1516)
T KOG1832|consen 1309 FNSTGDVMYA 1318 (1516)
T ss_pred eccCccchhh
Confidence 8887776654
No 330
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=8.8e-05 Score=70.16 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=116.5
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 231 (368)
..+..+|+++.+..+... ..+.|.-|+. ++++++ ..|+|.+-|.++.+.++++..|.+.+..+. -.|+. ++
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNl-Li 231 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNL-LI 231 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCe-EE
Confidence 578888998888877776 3445665554 444444 679999999999999999999999887544 45553 33
Q ss_pred EeecC--------CCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCC-Cce-eEeeEe
Q 017642 232 VCPGL--------QKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD-GTL-LQEVRR 299 (368)
Q Consensus 232 ~~~g~--------~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~-~~~-~~~~~~ 299 (368)
.| |. .|..|+||+... +.+..+.-+.++ .-+.|+|.-. .+++++..|. ..+-|..+ +.+ ...+..
T Consensus 232 tC-G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~lsNP~~~~~~v 308 (1118)
T KOG1275|consen 232 TC-GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATLSNPPAGVKMV 308 (1118)
T ss_pred Ee-ecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccccccCCCccceeEE
Confidence 33 43 255567766544 444444444443 5677888654 7888888898 99998432 111 122222
Q ss_pred ccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
......+..++++++|+.|+.|..+|.|.+|.
T Consensus 309 ~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 309 NPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22445699999999999999999999999998
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.13 E-value=0.00072 Score=62.90 Aligned_cols=186 Identities=8% Similarity=-0.068 Sum_probs=102.5
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642 92 SFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (368)
Q Consensus 92 ~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~ 169 (368)
=+.+||+.+...+ .+.+.+.|.++.+......+ ...- -.+.+++++..++..+.+.. ..+++...+..+...+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnp--d~v~~spdGk~afvTsyNsE-~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNL--DNVDTDYDGKYAFSTCYNSE-EGVTLAEMMAAERDWV 273 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCc--ccceECCCCCEEEEeccCcc-cCcceeeeccccCceE
Confidence 3456777664334 33477777765544433333 2222 22334444444433321100 0133444443332222
Q ss_pred EEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCC-----CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642 170 GELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-----LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV 243 (368)
Q Consensus 170 ~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i 243 (368)
..+.-.. + .++.++|++.. .++.|.+.|.++ .+.+..+.... ....+.++|||+++++ ++..+.++.|
T Consensus 274 vvfni~~-i--ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyV--anklS~tVSV 347 (635)
T PRK02888 274 VVFNIAR-I--EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIA--NGKLSPTVTV 347 (635)
T ss_pred EEEchHH-H--HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEE--eCCCCCcEEE
Confidence 2222110 0 02345676655 567899999988 45666665444 3456899999997554 4667889998
Q ss_pred EecCcce-------------eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 244 EHYASKR-------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 244 ~~~~~~~-------------~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
.+..... +.....-.+ ....+|.++|+.+.+...|.. |..||+.+
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsq-v~kwn~~~ 405 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA 405 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecce-eEEEehHH
Confidence 5544311 222222222 345789999998888889998 99999876
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0076 Score=54.41 Aligned_cols=239 Identities=15% Similarity=0.126 Sum_probs=152.5
Q ss_pred CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEEeC
Q 017642 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD 163 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vwd~ 163 (368)
....+...++|..+.... .+.+.+.+ ........... .....-..+..++.+. .++....+ +.|.+.|.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~--~~~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVID--ATSNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDT 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecc--cccceeeeecc-CCCccccceeeCCCCCeEEEecCCC-----CeEEEEcC
Confidence 445567788886555544 22233333 22111111111 1112222334433333 44444433 89999998
Q ss_pred CCCcEEEEEecCCceeEEEEeeCccEEE---e---CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (368)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~ 237 (368)
.+.+.............+++++++..+. . ++.+.+.|-.+.+.+........+ ..+++.|+|+.++++- ..
T Consensus 104 ~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~ 180 (381)
T COG3391 104 ATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SD 180 (381)
T ss_pred cccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cC
Confidence 8888888887555888999999986665 2 578999998888888876554445 6799999999866654 45
Q ss_pred CCeEEEEecCcceeee-----eeccCcceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeEe-eEeccCcccEEE
Q 017642 238 KGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQE-VRRGADRAEIYS 308 (368)
Q Consensus 238 dg~i~i~~~~~~~~~~-----~~~~~~~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~-~~~~~~~~~v~~ 308 (368)
++.+.+.+.....+.. ...-......+.++++|.++...... +. +.+.|..++..... +... .. ....
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCc
Confidence 7888886655544442 11112234678899999966655444 47 99999988877655 2221 12 4567
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEEccCCCCCC
Q 017642 309 LAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 309 l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~ 339 (368)
+.++|+|+.+.+.. ..+.+.+.|..+.....
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 89999999988774 45789998888765544
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00013 Score=68.67 Aligned_cols=102 Identities=11% Similarity=0.197 Sum_probs=76.1
Q ss_pred EEEcCCCCEEEEEe---C--CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642 91 ISFNQDHGCFAAGT---D--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (368)
Q Consensus 91 ~~~s~~g~~l~~~~---d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~ 165 (368)
..|+|...++|+++ . +.|.||- ++++.. +.. ..+..+.+++|+|....++.+-.. |.+.+|...+
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq--r~V--t~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~~ 90 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ--RDV--TYPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTNT 90 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCC--ccc--ccceehhhhccChHHHHHhhcccc-----ceeEEEecCC
Confidence 46888888888876 2 3388884 444433 223 345667789999999999988776 9999999766
Q ss_pred CcEEEEEe-cCCceeEEEEeeCccEEE-e--CCcEEEEEcC
Q 017642 166 SRCIGELS-FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFA 202 (368)
Q Consensus 166 ~~~~~~~~-~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~ 202 (368)
.+.-.... |+.+|..+.|+++|..++ . -|.+.+|...
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55433333 999999999999999888 3 4789999764
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00028 Score=66.54 Aligned_cols=186 Identities=16% Similarity=0.248 Sum_probs=110.8
Q ss_pred eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCc-eeEEEEeeCccEEE---eC-C----cEEEEEcCCC---
Q 017642 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE-VRSVKLRRDRIIVV---LE-Q----KIFVYNFADL--- 204 (368)
Q Consensus 138 ~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~---~d-~----~i~vwd~~~~--- 204 (368)
++++..++-|..+ |.|.+++ +.-+.++.++ +... |..+-...+..+++ .| + .+++||++.-
T Consensus 32 ~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 32 SSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred cCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3444444444544 8888887 4445556666 5555 44444444445555 22 2 6999999532
Q ss_pred ---eEE---EEEe----ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC---cceeee--eeccCcceEEEEECCC
Q 017642 205 ---KLL---HQIE----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA---SKRTKF--IMAHDSRIACFALTQD 269 (368)
Q Consensus 205 ---~~~---~~~~----~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~---~~~~~~--~~~~~~~i~~v~~sp~ 269 (368)
+++ +.+. ....++.+++++.+-+. +|+ |-.+|.|..+.-+ .+-.+. ......+|+.+++..+
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~--Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT--IVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccE--EEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 333 2221 12446778888888553 554 7889998873322 121222 2234678999999999
Q ss_pred CCE-EEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 270 GQL-LATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 270 g~~-l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
++. +.++... . |.+|.+....+... +.. |...+.|..|++....+++++. ..|.+|+....+.
T Consensus 183 ~~s~lFv~Tt~-~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 183 GKSVLFVATTE-Q-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGP 247 (933)
T ss_pred CceeEEEEecc-e-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEecC-ceEEEEcCCCcce
Confidence 986 4444443 4 89999874332222 333 6678889998876554655543 4588888775444
No 335
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0069 Score=54.69 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=137.0
Q ss_pred EEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe--EEEEecC-CCCCCCCCcEEEEe
Q 017642 88 LLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGG-PDPQYPLNKVMIWD 162 (368)
Q Consensus 88 v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~-~d~~~~~~~i~vwd 162 (368)
-..+++++++..+.... ++.|.+.|............ +. .-..+.+++++ .+++-.+ .+ +.+.+.|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvid 146 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVID 146 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCC-----ceEEEEe
Confidence 45678888888665554 67799999665554433222 22 33455555544 4444443 24 8999999
Q ss_pred CCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEE-----EEeccCCCeeEEEEecCCCeEEEEe
Q 017642 163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-----QIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
..+++...+......-..++++|+|..+. .++.|.+.|.......+ .+.... .-..+.+.+++...+++.
T Consensus 147 ~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 147 AATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred CCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEe
Confidence 99999888865333238999999998665 37899999976655443 122222 224588999999888877
Q ss_pred ecCCCCeEEEEecCcceeeee--eccCcceEEEEECCCCCEEEEEeCC-CcEEEEEECCCCceeEeeEeccC-cccEEEE
Q 017642 234 PGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGAD-RAEIYSL 309 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~~~~~~~--~~~~~~i~~v~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~~~~~~~~~~-~~~v~~l 309 (368)
.++.++.+...+.....+... .........+.++|+|+.+.+.... +. +.+-|..+......+..+.+ ...+..+
T Consensus 226 ~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~ 304 (381)
T COG3391 226 DGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSI 304 (381)
T ss_pred ccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceec
Confidence 554446777644444333332 1111145678899999988877554 66 99999888887766554322 1235556
Q ss_pred EEecC
Q 017642 310 AFSSN 314 (368)
Q Consensus 310 ~~sp~ 314 (368)
++.+.
T Consensus 305 ~~~~~ 309 (381)
T COG3391 305 AISPL 309 (381)
T ss_pred cceee
Confidence 65553
No 336
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=0.0038 Score=51.81 Aligned_cols=236 Identities=17% Similarity=0.130 Sum_probs=133.1
Q ss_pred EEEEEEcCCCC-EEEEEe-CCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642 88 LLHISFNQDHG-CFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 88 v~~~~~s~~g~-~l~~~~-d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~ 164 (368)
-..|+|+|.-. -++.+. -++ ..++|.+..+......-. ......-.=.|++++.++.....|..-..|.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34567777643 445555 444 677887766554332221 22222223457889988888777765566899999987
Q ss_pred CC-cEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEE--------------------EcCCCeEEEEEe----ccCCCe
Q 017642 165 QS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVY--------------------NFADLKLLHQIE----TIANPK 217 (368)
Q Consensus 165 ~~-~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vw--------------------d~~~~~~~~~~~----~~~~~v 217 (368)
.+ +.+.++. |.-.-..+.+.+||+.++ .+|-|... |..+|+++.... .+...+
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 5666776 777888999999999988 66655554 222333322211 122234
Q ss_pred eEEEEecCCCeEEEEee--cC-CCCeEEE-EecCcceeeeee-------ccCcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642 218 GLCAVSQGVGSLVLVCP--GL-QKGQVRV-EHYASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~--g~-~dg~i~i-~~~~~~~~~~~~-------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw 286 (368)
..++...||.- ++.|- |. .|---.+ --..++.+..+. .....|-+|+.+-+..+++..+-.|....+|
T Consensus 229 RHld~g~dgtv-wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 229 RHLDIGRDGTV-WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeeCCCCcE-EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence 45555555541 11110 00 0000011 111122222221 2234678888887666777777666658999
Q ss_pred ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
|..+|..+..-... ....++ +...-+++.+.+|.|.++.
T Consensus 308 da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 308 DAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EcCCCcEEeccccc----ccccce--eccCceEEecCCceEEecc
Confidence 99999988654431 122333 3334455566788888873
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.0016 Score=59.13 Aligned_cols=169 Identities=13% Similarity=0.167 Sum_probs=92.0
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEe--ccCCCeeEE-EE-ecCC-Ce
Q 017642 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE--TIANPKGLC-AV-SQGV-GS 228 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~-~~-~~~~-~~ 228 (368)
.|++|+ ..|+.+..+. ..+.+.++.|+.+..+++ .||.+++||+. |+....+. .....+..+ .+ ...+ .+
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 589998 6777888877 458999999999887777 79999999986 33311111 011112111 11 1111 33
Q ss_pred EEEEeecCCCCeEEE-EecCcc-eeeee---ec-----cCcc-eEE-EEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642 229 LVLVCPGLQKGQVRV-EHYASK-RTKFI---MA-----HDSR-IAC-FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i-~~~~~~-~~~~~---~~-----~~~~-i~~-v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (368)
+++.+ .++.+.+ .+.... ..+.+ .. +... ... ..++.+....+....++. +.+.+-...+.
T Consensus 140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--- 212 (410)
T ss_pred EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence 33332 2455554 332221 11111 11 0000 000 223444444444444444 55443222211
Q ss_pred eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
+. ..+++..|++||+|++||.-..+|.+.|....-.+.
T Consensus 213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence 11 235799999999999999999999998887655443
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=0.00091 Score=60.77 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=76.5
Q ss_pred EecCCceeEEEEeeCcc-EEE-------eCC----cEEEEEcCCCeE--EEEE-eccCCCeeEEEEecCCCeEEEEeecC
Q 017642 172 LSFRSEVRSVKLRRDRI-IVV-------LEQ----KIFVYNFADLKL--LHQI-ETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 172 ~~~~~~v~~~~~~~~~~-~l~-------~d~----~i~vwd~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
+..+....++.|+-... .+. .+| .-.+|++...+. +... -.....+.+++++|+.+.+++ |+
T Consensus 202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl---GC 278 (545)
T PF11768_consen 202 IRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL---GC 278 (545)
T ss_pred EEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE---Ee
Confidence 33444556777765322 221 133 244566644332 2111 135567889999999998665 55
Q ss_pred CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 237 ~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
.||.|.+|+...+..... ...-..+.++|+|+|.++++|+..|. +.+||+.-
T Consensus 279 ~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 279 EDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred cCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeec
Confidence 899999988776544333 44456789999999999999999999 99999863
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.98 E-value=0.005 Score=52.96 Aligned_cols=193 Identities=14% Similarity=0.183 Sum_probs=116.0
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEE-------------EcccCCceeEEEEE---EeCCeEEEEecCCCC
Q 017642 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVEML---FRCNILALVGGGPDP 151 (368)
Q Consensus 88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~ 151 (368)
|..+...++-+.|++-+|+.+.+++++........ .+ .....+..++ .......++.+-.
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~k-- 113 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVK-- 113 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc--cccCCeeEEeeccccccceEEEEEEC--
Confidence 99999999888888888899999998765443311 12 1222333333 2233334444333
Q ss_pred CCCCCcEEEEeCCCC-----cEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccC------------
Q 017642 152 QYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA------------ 214 (368)
Q Consensus 152 ~~~~~~i~vwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~------------ 214 (368)
.+|.+|..... +..+++...+.+..++|..+...+...+...+.|+.++.....+....
T Consensus 114 ----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 ----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred ----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 67888876542 566777788999999999666555578889999998776544432111
Q ss_pred CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc
Q 017642 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (368)
Q Consensus 215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~ 292 (368)
.++..+.+. ++ . ++++ .+..-.+-+..+...+ .+.- ...+..+++ ...||+.... +. |.||++.+++
T Consensus 190 ~~~~~~~~~-~~-e-~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~-iEV~~~~~~~ 258 (275)
T PF00780_consen 190 KPLGIFQLS-DN-E-FLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NS-IEVRSLETGE 258 (275)
T ss_pred CceEEEEeC-Cc-e-EEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CE-EEEEECcCCc
Confidence 122222322 22 3 3333 1222222334443332 2221 234556666 3457776665 45 9999999999
Q ss_pred eeEeeEe
Q 017642 293 LLQEVRR 299 (368)
Q Consensus 293 ~~~~~~~ 299 (368)
.++.+..
T Consensus 259 lvQ~i~~ 265 (275)
T PF00780_consen 259 LVQTIPL 265 (275)
T ss_pred EEEEEEC
Confidence 9988875
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.97 E-value=0.0066 Score=49.73 Aligned_cols=127 Identities=9% Similarity=0.026 Sum_probs=80.2
Q ss_pred CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (368)
Q Consensus 97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~ 175 (368)
..+++.|+ .+.+.--|..++....+..+ +.+.....+. -++. .++++-. |.+++.+.++|+....+.-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdf-VV~GCy~------g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDF-VVLGCYS------GGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCE-EEEEEcc------CcEEEEEecchhheeeeeeh
Confidence 34666677 55577777777777766665 4555555444 2333 4444433 89999999999888888744
Q ss_pred CceeEE-EEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 176 SEVRSV-KLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 176 ~~v~~~-~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
+.|.+- ...+++.++. .|++.+..|.++..++...+...+....-++.+-...++++.
T Consensus 93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence 444433 2455665555 699999999999888877654444334445555334444443
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.94 E-value=0.0071 Score=56.59 Aligned_cols=234 Identities=11% Similarity=0.099 Sum_probs=125.6
Q ss_pred CEEEEEe-CCeEEEEEecCCCcceEEEcccCCc---eeE-EEEEEeCCeEEEEecCCCCCC----CCCcEEEEeCCCCcE
Q 017642 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGV-VEMLFRCNILALVGGGPDPQY----PLNKVMIWDDHQSRC 168 (368)
Q Consensus 98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~s~~~d~~~----~~~~i~vwd~~~~~~ 168 (368)
..++.++ ++.|.-+|.++++......+. ... ..+ ....... +.+++..... .+ .++.|.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~-~~v~vg~~~~-~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVK-KLVIIGSSGA-EFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEEC-CEEEEecccc-ccccCCCCcEEEEEECCCCce
Confidence 4555555 777888998888877665543 110 001 1112222 3333332110 00 127899999999998
Q ss_pred EEEEecC-Cc--------------------e-eEEEEee-CccEEE--eCC------------------cEEEEEcCCCe
Q 017642 169 IGELSFR-SE--------------------V-RSVKLRR-DRIIVV--LEQ------------------KIFVYNFADLK 205 (368)
Q Consensus 169 ~~~~~~~-~~--------------------v-~~~~~~~-~~~~l~--~d~------------------~i~vwd~~~~~ 205 (368)
+..+... .. + ...++.+ .+.+++ .++ .|.-+|+++|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 8877621 10 1 1233443 344444 343 69999999999
Q ss_pred EEEEEeccCCCee------EEEEe----cCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEE
Q 017642 206 LLHQIETIANPKG------LCAVS----QGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLA 274 (368)
Q Consensus 206 ~~~~~~~~~~~v~------~~~~~----~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~ 274 (368)
.+..++....... ...+. -++....+++.++.+|.+.. +..+++.+-..... ...++.+| + .++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vy 342 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVY 342 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEE
Confidence 9887753211110 01111 23332222333667888776 55566655443321 11233344 2 222
Q ss_pred EE------------------eCCCcEEEEEECCCCceeEeeEeccCc------ccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642 275 TS------------------STKGTLVRIFNTLDGTLLQEVRRGADR------AEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 275 s~------------------~~dg~~i~iwd~~~~~~~~~~~~~~~~------~~v~~l~~sp~~~~l~s~s~dg~i~iw 330 (368)
.+ ..+|. |.-.|+.+|+.+-+.....+. .+...-...-.+..|+.++.||.|+.+
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 21 23567 888899898887766542111 111111111245788888899999999
Q ss_pred EccCCCCCCC
Q 017642 331 NLKVNSGSAR 340 (368)
Q Consensus 331 d~~~~~~~~~ 340 (368)
|.++++..-.
T Consensus 422 d~~tG~~lW~ 431 (488)
T cd00216 422 DATTGKELWK 431 (488)
T ss_pred ECCCCceeeE
Confidence 9999987644
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.93 E-value=0.0087 Score=50.03 Aligned_cols=192 Identities=9% Similarity=0.063 Sum_probs=106.9
Q ss_pred CCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE-e--CCcEEEEE
Q 017642 127 GGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV-L--EQKIFVYN 200 (368)
Q Consensus 127 ~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~--d~~i~vwd 200 (368)
+-...+..+.|+++ +..++..+.. +.|..++. +|+.++.+. .-+..-+|++..++.+++ . ++.+.+++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 34445888999875 4455555554 88988995 688888887 346789999999998888 3 68899998
Q ss_pred cCCC------eEEEEEe-----ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeee--------eecc
Q 017642 201 FADL------KLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKF--------IMAH 257 (368)
Q Consensus 201 ~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~--------~~~~ 257 (368)
+... .....+. .+...+-.++|.+.++.++++. +..-..++.... ..+.. ....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccce
Confidence 8331 1112222 1334577899999999887764 233334422221 11110 1123
Q ss_pred CcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEecc--Cc-----ccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642 258 DSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DR-----AEIYSLAFSSNAQWLAVSSDKGTVHV 329 (368)
Q Consensus 258 ~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~-----~~v~~l~~sp~~~~l~s~s~dg~i~i 329 (368)
...+.+++++|... +++....... |.++| .+|+.+..+.... |. ...-.|+|.++|++.++ ++.+..++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 34578999999655 5555555555 99999 6788776655421 11 24678999999976655 56776665
Q ss_pred E
Q 017642 330 F 330 (368)
Q Consensus 330 w 330 (368)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 5
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.92 E-value=0.0018 Score=62.49 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=86.9
Q ss_pred CcEEEEeCCCCcEEEEEecCCc--eeEEEEe-------eCccEEE-eCCcEEEEEcCCC--eEEEE-Ee--ccCCCeeEE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSE--VRSVKLR-------RDRIIVV-LEQKIFVYNFADL--KLLHQ-IE--TIANPKGLC 220 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~--v~~~~~~-------~~~~~l~-~d~~i~vwd~~~~--~~~~~-~~--~~~~~v~~~ 220 (368)
+.|+-.|++.|+.+.++..... |..++-. +...++. .+..+..||.|-. +++.. .. .......|+
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 7899999999999999993333 4444332 2233444 6889999999753 22211 10 123445667
Q ss_pred EEecCCCeEEEEeecCCCCeEEEEecCcceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (368)
Q Consensus 221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~ 288 (368)
+-..+|. +|. |+.+|.||+++..+..-++ +.+-..+|..|..+.||++|++.+.. . |.+++.
T Consensus 584 aTt~~G~---iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t 646 (794)
T PF08553_consen 584 ATTEDGY---IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT 646 (794)
T ss_pred EecCCce---EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence 7776763 555 8899999998766544333 55778899999999999987766644 4 777775
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.90 E-value=6.2e-06 Score=74.73 Aligned_cols=202 Identities=12% Similarity=0.205 Sum_probs=119.5
Q ss_pred EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE-EEEe--cCCceeEEEEee-CccEEE-------eCCcEEEEE
Q 017642 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELS--FRSEVRSVKLRR-DRIIVV-------LEQKIFVYN 200 (368)
Q Consensus 132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~-~~~~--~~~~v~~~~~~~-~~~~l~-------~d~~i~vwd 200 (368)
+.+..++.+...++.|..+ |.|-+-.++...-. .++. +....++++|++ |...++ .|..+.|||
T Consensus 61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4444444454455555555 88888776544222 3333 777899999998 444454 377899999
Q ss_pred cCCC--e--EEEEEec-cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECC-CCCEEE
Q 017642 201 FADL--K--LLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLA 274 (368)
Q Consensus 201 ~~~~--~--~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~ 274 (368)
+.++ . .-..+.. ......+++|-.+.+ ++. +|.....+.+.+..........-.+..+..+..+| .+.|++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc--hhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence 9876 1 1112222 223445677775544 233 47777788886655443333333344567778888 667777
Q ss_pred EEeCCCcEEEEEE-CCCCc-eeEeeEecc--CcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCCCCC
Q 017642 275 TSSTKGTLVRIFN-TLDGT-LLQEVRRGA--DRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSARSEP 343 (368)
Q Consensus 275 s~~~dg~~i~iwd-~~~~~-~~~~~~~~~--~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 343 (368)
+-. ||. |-+|| .++-+ ++..+.... ....+..++|+|... .+++.. +.++|+++|+..-......++
T Consensus 213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn 285 (783)
T KOG1008|consen 213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN 285 (783)
T ss_pred ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc
Confidence 655 888 99999 33322 222222110 112489999999643 445554 567899999976555444443
No 345
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.84 E-value=0.019 Score=51.07 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=99.1
Q ss_pred CCCEEEEEe--CCeEEEEEecCC--CcceEEEccc------CCceeEEEEEEeCCeEEEEec-CCCCCCCCCcEEEEeCC
Q 017642 96 DHGCFAAGT--DHGFRIYNCDPF--REIFRRDFER------GGGIGVVEMLFRCNILALVGG-GPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 96 ~g~~l~~~~--d~~i~iw~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~~~i~vwd~~ 164 (368)
+.++|+..+ .+.|.|.|+.+. +..+.+.++. ..-..-.....-+++.+++++ ++...-..|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 466888877 555999998743 3333344431 011111222333556333332 21111233678899988
Q ss_pred CCcEEEEEec----CCceeEEEEeeCccEEE-----------------------eCCcEEEEEcCCCeEEEEEeccCCC-
Q 017642 165 QSRCIGELSF----RSEVRSVKLRRDRIIVV-----------------------LEQKIFVYNFADLKLLHQIETIANP- 216 (368)
Q Consensus 165 ~~~~~~~~~~----~~~v~~~~~~~~~~~l~-----------------------~d~~i~vwd~~~~~~~~~~~~~~~~- 216 (368)
+.+....... ..--+.+-|.|....++ ...++++||+.+.+.++++......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7887777762 22345666777666555 1468999999999999999755432
Q ss_pred -eeEEEEecC--CCeEEEEeecCCCCeEEEEec-Cc-----ceeeeeec-----------------cCcceEEEEECCCC
Q 017642 217 -KGLCAVSQG--VGSLVLVCPGLQKGQVRVEHY-AS-----KRTKFIMA-----------------HDSRIACFALTQDG 270 (368)
Q Consensus 217 -v~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~-~~-----~~~~~~~~-----------------~~~~i~~v~~sp~g 270 (368)
.-.+.|..+ ...-++.+. -...|..|-. .. +.+..+.. -..-|+.|.+|.|.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred ceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 223555444 344344332 2345544322 21 22222211 12347899999999
Q ss_pred CEEEEEeC-CCcEEEEEECCCCc---eeEeeEec--------------cCcccEEEEEEecCCCEEEEE
Q 017642 271 QLLATSST-KGTLVRIFNTLDGT---LLQEVRRG--------------ADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 271 ~~l~s~~~-dg~~i~iwd~~~~~---~~~~~~~~--------------~~~~~v~~l~~sp~~~~l~s~ 321 (368)
++|...+. +|. |+.||+.+-. .+.++..+ .-.+...-|..|-||+.|...
T Consensus 324 rfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 324 RFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 98876665 777 9999998632 23222211 012345788999999988755
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.81 E-value=0.0068 Score=58.67 Aligned_cols=132 Identities=14% Similarity=0.265 Sum_probs=87.1
Q ss_pred CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCC-------CeEEEEeecCCCCeEEEEecCcc--eeeee----eccCc
Q 017642 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-------GSLVLVCPGLQKGQVRVEHYASK--RTKFI----MAHDS 259 (368)
Q Consensus 193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~l~~~g~~dg~i~i~~~~~~--~~~~~----~~~~~ 259 (368)
...|+-.|++.|+.+..+..+... ....+.|+. ...++.. .+..+..|+.+.. .+..- .....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccCC
Confidence 468999999999999999876543 234455542 2334433 3445544444332 22111 12345
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
..+|++-+.+| +||+|+.+|. ||+||- .|..-++.-.+ -..+|.+|..+.||++|++.+ +..|.+++..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 67888887777 6999999999 999994 44433332222 457999999999999988766 5578888875
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00013 Score=66.36 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=68.0
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEE-EEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
...|..+.|+|.-.++|++..+|. |.+..+. .+.+.++.- +...++ +++|.|||+.||+|-.||+|++.|++++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 345788999999999999999999 9999876 787878875 344555 99999999999999999999999999998
Q ss_pred CCCC
Q 017642 337 GSAR 340 (368)
Q Consensus 337 ~~~~ 340 (368)
...+
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 7755
No 348
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00012 Score=63.01 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=73.6
Q ss_pred EecCcceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEE
Q 017642 244 EHYASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS 321 (368)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~ 321 (368)
...+.+....+..|...|..++|+|..+ ++..++.+.. |+|.|+++...+..+.. + ..+++++|.-|.. +++.|
T Consensus 179 ~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 179 ESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred ccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcceeEEe
Confidence 3344444556667888899999999887 7888888888 99999999999888886 3 6899999998765 56667
Q ss_pred eCCCeEEEEEccCCCCC
Q 017642 322 SDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 322 s~dg~i~iwd~~~~~~~ 338 (368)
-..|.|.|||++.++..
T Consensus 255 l~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGP 271 (463)
T ss_pred ccCceEEEEEccCCCch
Confidence 78999999999877643
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.75 E-value=0.0033 Score=56.18 Aligned_cols=168 Identities=9% Similarity=0.095 Sum_probs=92.5
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEecc-----------------CCC
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI-----------------ANP 216 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~-----------------~~~ 216 (368)
+.+.++|+.+++..........+....|+|+|+.++ .++.|+++++.+++..+.-... -+.
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 679999999976554444567899999999999998 7999999998777544322111 112
Q ss_pred eeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee--ccCc---ceEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Q 017642 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDS---RIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (368)
Q Consensus 217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~---~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~ 291 (368)
-..+.|+||++.++++. ..+..|.. +.... .... .+..+.+---|.-.... . +.|+|+.++
T Consensus 103 ~~~~~WSpd~~~la~~~--~d~~~v~~-------~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v----~-l~v~~~~~~ 168 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLR--FDEREVPE-------YPLPDYSPPDSQYPEVESIRYPKAGDPNPRV----S-LFVVDLASG 168 (353)
T ss_dssp SBSEEE-TTSSEEEEEE--EE-TTS-E-------EEEEEESSSTESS-EEEEEE--BTTS---EE----E-EEEEESSST
T ss_pred ccceEECCCCCEEEEEE--ECCcCCce-------EEeeccCCccccCCcccccccCCCCCcCCce----E-EEEEECCCC
Confidence 34678999999755433 22333332 11111 1111 23444442223211111 2 778899887
Q ss_pred ceeE-eeEe--ccCcccEEEEEEecCCCEEEEE--eCCC---eEEEEEccCCCC
Q 017642 292 TLLQ-EVRR--GADRAEIYSLAFSSNAQWLAVS--SDKG---TVHVFNLKVNSG 337 (368)
Q Consensus 292 ~~~~-~~~~--~~~~~~v~~l~~sp~~~~l~s~--s~dg---~i~iwd~~~~~~ 337 (368)
+... .... ......+..+.|.++++.|+.. ..+. .+.++|..+++.
T Consensus 169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 7542 2220 1134578999999999844333 3222 366667765443
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.75 E-value=0.026 Score=49.75 Aligned_cols=230 Identities=12% Similarity=0.020 Sum_probs=113.0
Q ss_pred EEcCCCCEEEEEe--CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE--EecCCCCCCCCCcEEEEeCCC
Q 017642 92 SFNQDHGCFAAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL--VGGGPDPQYPLNKVMIWDDHQ 165 (368)
Q Consensus 92 ~~s~~g~~l~~~~--d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~d~~~~~~~i~vwd~~~ 165 (368)
+|.+||+.|+.++ ++. +.+.|+++++.... .. +..........+++...+ +-.+ ..|+-.|+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL--Td-g~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL--TD-GPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDT 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC--cc-CCCCCccceEEecCCCeEEEEECC-------CeEEEEECCc
Confidence 5678998776655 554 66666665444322 21 111111122233333333 3322 5899999999
Q ss_pred CcEEEEEe-cCCceeEEEEe--eCccEEE------e-------------------CCcEEEEEcCCCeEEEEEeccCCCe
Q 017642 166 SRCIGELS-FRSEVRSVKLR--RDRIIVV------L-------------------EQKIFVYNFADLKLLHQIETIANPK 217 (368)
Q Consensus 166 ~~~~~~~~-~~~~v~~~~~~--~~~~~l~------~-------------------d~~i~vwd~~~~~~~~~~~~~~~~v 217 (368)
.+....+. ....+-...|. .|+..++ . ...|...|+.+|+....+. ....+
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wl 190 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWL 190 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-E
T ss_pred CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccc
Confidence 88777776 44444334553 4566554 0 3457778888887655554 45567
Q ss_pred eEEEEecCCCeEEEEee-cCCCCe-EEEEecC--cceeeeeeccC--cceEEEEECCCCCEEEEEe-----CCCcEEEEE
Q 017642 218 GLCAVSQGVGSLVLVCP-GLQKGQ-VRVEHYA--SKRTKFIMAHD--SRIACFALTQDGQLLATSS-----TKGTLVRIF 286 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~-g~~dg~-i~i~~~~--~~~~~~~~~~~--~~i~~v~~sp~g~~l~s~~-----~dg~~i~iw 286 (368)
..+.++|....++..|= |-.+.. -|||..+ +...+.+..+. ..+..=-|.+||..|..-+ .+.. |.-+
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~ 269 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGY 269 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEee
Confidence 88899998877666542 223332 3565543 34444443332 2345557899998655422 2334 7778
Q ss_pred ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC----------------eEEEEEccCCCC
Q 017642 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----------------TVHVFNLKVNSG 337 (368)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----------------~i~iwd~~~~~~ 337 (368)
|..+++....... .....+.-++||++++.=+.|. -|++++++.++.
T Consensus 270 d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 270 DPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp -TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred CCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 8888876533332 1345666789999887544432 466777776554
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00013 Score=40.88 Aligned_cols=38 Identities=32% Similarity=0.639 Sum_probs=32.3
Q ss_pred ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (368)
Q Consensus 292 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 331 (368)
+.+..+.. |...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556665 677899999999999999999999999996
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.72 E-value=0.026 Score=48.90 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=110.3
Q ss_pred EEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC-C
Q 017642 90 HISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-Q 165 (368)
Q Consensus 90 ~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~-~ 165 (368)
.++++.||+++.+.. ...|.|.|++..+...+... + .+..+...++..+..-|++ |.+.-..+. .
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----P-GC~~iyP~~~~~F~~lC~D------Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----P-GCWLIYPSGNRGFSMLCGD------GSLLTVTLDAD 167 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----T-SEEEEEEEETTEEEEEETT------SCEEEEEETST
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC----C-CEEEEEecCCCceEEEecC------CceEEEEECCC
Confidence 358889999998876 55599999887665533222 1 2333344443333333332 888888776 5
Q ss_pred CcEEEEEe-----cCCce-eEEEEeeC-ccEEE--eCCcEEEEEcCCCeE--EEEEec----------cCCCeeEEEEec
Q 017642 166 SRCIGELS-----FRSEV-RSVKLRRD-RIIVV--LEQKIFVYNFADLKL--LHQIET----------IANPKGLCAVSQ 224 (368)
Q Consensus 166 ~~~~~~~~-----~~~~v-~~~~~~~~-~~~l~--~d~~i~vwd~~~~~~--~~~~~~----------~~~~v~~~~~~~ 224 (368)
|+...+.. ...++ ..-++... +.+++ .+|.|+-.|+..... ...+.. ..+....+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 66553322 12222 23344443 44544 689999999865432 222211 112234578888
Q ss_pred CCCeEEEEeecC-----CCCeEEEEecCc---ceeeeeeccCcceEEEEECCCCC-EEEEE-eCCCcEEEEEECCCCcee
Q 017642 225 GVGSLVLVCPGL-----QKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQ-LLATS-STKGTLVRIFNTLDGTLL 294 (368)
Q Consensus 225 ~~~~~~l~~~g~-----~dg~i~i~~~~~---~~~~~~~~~~~~i~~v~~sp~g~-~l~s~-~~dg~~i~iwd~~~~~~~ 294 (368)
..+.+++..-.. .|+--.||..+. +.+..+.. ..++.+|+.+.+.+ +|++. ..++. |.|||..+|+.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~ 325 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEE
Confidence 777766654211 233444544433 44444442 34677999999887 66554 45788 999999999999
Q ss_pred EeeEe
Q 017642 295 QEVRR 299 (368)
Q Consensus 295 ~~~~~ 299 (368)
+++..
T Consensus 326 ~~~~~ 330 (342)
T PF06433_consen 326 RSIEQ 330 (342)
T ss_dssp EEE--
T ss_pred eehhc
Confidence 88875
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.0051 Score=56.14 Aligned_cols=180 Identities=12% Similarity=0.147 Sum_probs=88.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~ 166 (368)
.-....|...+++.+.-..+.|.|+. +.+....+.+. ....+-.+.. +.+..+.+. +.|.+||+.++
T Consensus 70 ~g~~~vw~~~n~yAv~~~~~~I~I~k--n~~~~~~k~i~--~~~~~~~If~--G~LL~~~~~-------~~i~~yDw~~~ 136 (443)
T PF04053_consen 70 SGLSFVWSSRNRYAVLESSSTIKIYK--NFKNEVVKSIK--LPFSVEKIFG--GNLLGVKSS-------DFICFYDWETG 136 (443)
T ss_dssp E-SEEEE-TSSEEEEE-TTS-EEEEE--TTEE-TT-------SS-EEEEE---SSSEEEEET-------TEEEEE-TTT-
T ss_pred ceeEEEEecCccEEEEECCCeEEEEE--cCccccceEEc--CCcccceEEc--CcEEEEECC-------CCEEEEEhhHc
Confidence 34556788866544433366688863 22222111221 1112333333 333333332 56999999999
Q ss_pred cEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCC-----------eEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 167 RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADL-----------KLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
+.++++.... |..+.|++++.+++ .+..+++++.... .....+......|.+.+|.-+ .++-+
T Consensus 137 ~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYt 212 (443)
T PF04053_consen 137 KLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYT 212 (443)
T ss_dssp -EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE
T ss_pred ceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEE
Confidence 9999998554 99999999999888 6888998876432 023333332457777788655 23333
Q ss_pred ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (368)
Q Consensus 234 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (368)
+ ...++. .. +.....+..-..++.=+.+.+..+.+.....|+. |..+.+.
T Consensus 213 T---~~~lkY-l~-~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~ld 262 (443)
T PF04053_consen 213 T---SNHLKY-LV-NGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYELD 262 (443)
T ss_dssp ----TTEEEE-EE-TTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE--
T ss_pred c---CCeEEE-EE-cCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEEC
Confidence 2 224444 22 3333334333556777777776678888888888 8777664
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.026 Score=49.00 Aligned_cols=180 Identities=11% Similarity=0.019 Sum_probs=105.2
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEE-EeeCccEEEeCCcEEEEEcCCCeEEEEEec-----cCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVK-LRRDRIIVVLEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~ 229 (368)
+.|.-|+..+++. ..+...+.+.++. +...+.+++.+..+++++.+++..+..+.. .....+...+.++|..
T Consensus 47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~- 124 (307)
T COG3386 47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI- 124 (307)
T ss_pred CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE-
Confidence 7888888765543 3444444455544 555666666888899999876665333321 1233456778888863
Q ss_pred EEEeec---------CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC--C---ceeE
Q 017642 230 VLVCPG---------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--G---TLLQ 295 (368)
Q Consensus 230 ~l~~~g---------~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~--~---~~~~ 295 (368)
++...+ -.-|.++..+..+...+.+..+-..-+.|+||||++.|+.+......|.-|++.. + ....
T Consensus 125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~ 204 (307)
T COG3386 125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG 204 (307)
T ss_pred EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence 322212 0113233333234555555555556688999999997777766543277777652 1 1111
Q ss_pred eeEeccCcccEEEEEEecCCCEEEEEeCCC-eEEEEEccCCCCC
Q 017642 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGS 338 (368)
Q Consensus 296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~iwd~~~~~~~ 338 (368)
.+......+..-.++...+|.+.+++..+| .|.+|+.+ ++..
T Consensus 205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 111111345666788888888876555554 79999887 5443
No 355
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=3.2e-05 Score=72.86 Aligned_cols=160 Identities=8% Similarity=0.035 Sum_probs=112.1
Q ss_pred EEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642 169 IGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (368)
Q Consensus 169 ~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~ 244 (368)
.+.+. +....+|++|+.+.+.++ ..|.|++|++.+|........|..+++.+.-+.+|..++..+ ....-...+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltss-s~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSS-SSSSPLSALW 1172 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeec-cccCchHHHh
Confidence 34455 778899999999888777 589999999999999999999999999999999998755443 2223344557
Q ss_pred ecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--CcccEEEEEEecCCCEEEE
Q 017642 245 HYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNAQWLAV 320 (368)
Q Consensus 245 ~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s 320 (368)
+... .....+. .-.++.|+.....-+.|+.... ..|||+.++..+.++-.+. ....-+...|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~-a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADD-ALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred ccccccCcccccc----ccceeehhhhHHHHHhcccccc-eEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 7654 2222222 3467888876544444444445 8999999998877743221 111236788999988776
Q ss_pred EeCCCeEEEEEccCCCCCC
Q 017642 321 SSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 321 ~s~dg~i~iwd~~~~~~~~ 339 (368)
.|| .+||++..+.+.
T Consensus 1247 --ndG--vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIH 1261 (1516)
T ss_pred --eCc--eeeeeccHHHHh
Confidence 466 479998875543
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00024 Score=64.70 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=74.5
Q ss_pred CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceE-EEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (368)
Q Consensus 216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~-~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~ 294 (368)
.+..+.|+|.-+ ++|. +..+|.+.+...+.+.+.++.-|...++ +++|.|||+.||.|-.||+ |++.|+.++..+
T Consensus 22 ~i~~~ewnP~~d--LiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMD--LIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccc--hhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence 455678888776 3444 6679999997777888888887777777 9999999999999999999 999999999888
Q ss_pred EeeEeccCcccEEEEEEec
Q 017642 295 QEVRRGADRAEIYSLAFSS 313 (368)
Q Consensus 295 ~~~~~~~~~~~v~~l~~sp 313 (368)
..+... ....|.++.|.+
T Consensus 98 ~~~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFS-VETDISKGIWDR 115 (665)
T ss_pred eccccc-cccchheeeccc
Confidence 774322 345788888863
No 357
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.64 E-value=0.027 Score=47.04 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=107.6
Q ss_pred EEEEEEcCCCCEEEEEe-CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642 88 LLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 88 v~~~~~s~~g~~l~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~ 164 (368)
...+.|..+|.++-+.+ .+. |+.+|+++++......+ ....-.-.+....+.++..+--. +...+||..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd~~ 118 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITILGDKLYQLTWKE------GTGFVYDPN 118 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESSS------SEEEEEETT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEEECCEEEEEEecC------CeEEEEccc
Confidence 44577877787776665 443 99999998887766666 34455556666688888888655 899999999
Q ss_pred CCcEEEEEecCCceeEEEEeeCccEEE-eCC--cEEEEEcCCCeEEEEEeccCC-----CeeEEEEecCCCeEEEEeecC
Q 017642 165 QSRCIGELSFRSEVRSVKLRRDRIIVV-LEQ--KIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~--~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~g~ 236 (368)
+-+.+.++...+.=+.++ .|+..++ +|| .|+.+|.++.+..+.+....+ .++-+.+. +|. +.|-.=.
T Consensus 119 tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~--IyANVW~ 193 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK--IYANVWQ 193 (264)
T ss_dssp TTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE--EEEEETT
T ss_pred cceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE--EEEEeCC
Confidence 999999999777778887 4444444 665 688888888777766643221 23345554 332 2222122
Q ss_pred CCCeEEEEecCcceeeeee---------------ccCcceEEEEECCCCCEEEEEeCC
Q 017642 237 QKGQVRVEHYASKRTKFIM---------------AHDSRIACFALTQDGQLLATSSTK 279 (368)
Q Consensus 237 ~dg~i~i~~~~~~~~~~~~---------------~~~~~i~~v~~sp~g~~l~s~~~d 279 (368)
.|..++|+..++.....+. ....-.+.|+++|....|...+..
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 3555555666655444321 013457899999877755555543
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00042 Score=63.94 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=85.3
Q ss_pred CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (368)
Q Consensus 216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~ 293 (368)
.+.--++...+++ ++. |+.-|.++++...++....++. ..+.+..+..+++..++|.|+..|. |.++-+..+.+
T Consensus 35 ~v~lTc~dst~~~--l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p 110 (726)
T KOG3621|consen 35 RVKLTCVDATEEY--LAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELP 110 (726)
T ss_pred eEEEEEeecCCce--EEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCC
Confidence 4455566667775 443 6678999998888776665544 4556667788888888999999998 99998776432
Q ss_pred e---EeeEe-ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 294 L---QEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 294 ~---~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
. +.-.. ..|...|++++|++|+..|++|...|+|..-.++.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 11111 12567899999999999999999999999998887
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00019 Score=40.16 Aligned_cols=37 Identities=27% Similarity=0.564 Sum_probs=32.5
Q ss_pred eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642 250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (368)
Q Consensus 250 ~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd 287 (368)
....+..|...|.++.|++++.++++++.|+. +++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 34556678889999999999999999999999 99996
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.03 Score=46.88 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=98.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
...+..++|+|+...|++-.|.. |..++.+ ++......+ ......-.+.+..++.++++..++ +.+.+++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l--~g~~D~EgI~y~g~~~~vl~~Er~-----~~L~~~~ 92 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL--DGFGDYEGITYLGNGRYVLSEERD-----QRLYIFT 92 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE---SS-SSEEEEEE-STTEEEEEETTT-----TEEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC--CCCCCceeEEEECCCEEEEEEcCC-----CcEEEEE
Confidence 34599999999877665555333 5555532 333333334 334445567777888888877766 8999998
Q ss_pred CCCCc------EEEEEe------cCCceeEEEEeeCcc-EEE--eCCcEEEEEcCC---CeEEEEE--e------ccCCC
Q 017642 163 DHQSR------CIGELS------FRSEVRSVKLRRDRI-IVV--LEQKIFVYNFAD---LKLLHQI--E------TIANP 216 (368)
Q Consensus 163 ~~~~~------~~~~~~------~~~~v~~~~~~~~~~-~l~--~d~~i~vwd~~~---~~~~~~~--~------~~~~~ 216 (368)
+.... ....+. ++..+-.++|++.+. +++ ...-..+|.+.. ...+... . .....
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 73321 112222 345689999999644 333 444455555532 1111111 1 12234
Q ss_pred eeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccC---------cceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLVRIF 286 (368)
Q Consensus 217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---------~~i~~v~~sp~g~~l~s~~~dg~~i~iw 286 (368)
+..+.++|....+++.+ ..+..+...+.+++.+..+.-.. .....|+|.++|++.+ .++-+. .++|
T Consensus 173 ~S~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl-fy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL-FYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-EEEE
T ss_pred ccceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-EEEe
Confidence 56789999988877764 35667766777777665543211 2467899999997544 445544 4444
No 361
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.60 E-value=0.026 Score=45.67 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCceeEEEEeeCccEEE---e---------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642 175 RSEVRSVKLRRDRIIVV---L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l~---~---------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~ 242 (368)
......-..+|+|++.+ . .|.++.|-.. + .+..+...-.--+.++|+.+.+.++++ -+.+-.|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~i--Dsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYI--DSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEE--ccCceEEe
Confidence 44566777889999977 1 3455555532 2 222222223334568888887776654 45566676
Q ss_pred EEecCc--------ceeeeeec----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642 243 VEHYAS--------KRTKFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (368)
Q Consensus 243 i~~~~~--------~~~~~~~~----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (368)
-|+.+. +.+..++. ..-..-.+++..+|++.++.-..++ |..+|..+|+.+.+++. ....|++++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl--Pt~qitscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL--PTPQITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc--CCCceEEEE
Confidence 666432 11222221 1112234566778888777777788 99999999999999987 356899999
Q ss_pred Eec
Q 017642 311 FSS 313 (368)
Q Consensus 311 ~sp 313 (368)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 963
No 362
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.60 E-value=0.051 Score=49.03 Aligned_cols=235 Identities=14% Similarity=0.131 Sum_probs=115.6
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~ 165 (368)
.|+++.|.++..-|++|. .+.|.||.+...+..-.+. ......+.+.+ +-..+ +.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~-----~~~~~~~~~~~----~~~~~-------~~~~l~di~~ 66 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE-----QPPDLDYNFRR----FSLNN-------SPGKLTDISD 66 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------GGG-------SS-SEEE-GG
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC-----CCcccCccccc----ccccC-------CCcceEEehh
Confidence 589999999988888888 6668888775433221000 00111111100 00000 1122223221
Q ss_pred --------C-cEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEecc--------CCCeeEEEEe--
Q 017642 166 --------S-RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI--------ANPKGLCAVS-- 223 (368)
Q Consensus 166 --------~-~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~~-- 223 (368)
| .+...+. ..+.|++++.+.-|...+ .+|.+.|.|+|....+..-... ...++++.|.
T Consensus 67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 67 RAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp G--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred hCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence 1 2233333 578999999987777666 5899999999888776653211 2235556554
Q ss_pred ---cCCCe-EEEEeecCCCCeEEEEecC----cce----eeeeeccCcceEEEE-ECCC-----------------C---
Q 017642 224 ---QGVGS-LVLVCPGLQKGQVRVEHYA----SKR----TKFIMAHDSRIACFA-LTQD-----------------G--- 270 (368)
Q Consensus 224 ---~~~~~-~~l~~~g~~dg~i~i~~~~----~~~----~~~~~~~~~~i~~v~-~sp~-----------------g--- 270 (368)
.|+.. +.+.+ |...|.+.++... +.- ......+.++|..|. |+.+ |
T Consensus 147 ~~~~D~ySSi~L~v-GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 147 TLGGDGYSSICLLV-GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp E-TTSSSEEEEEEE-EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred ecCCCcccceEEEE-EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 23322 34444 7788998885332 111 111124555655554 3211 1
Q ss_pred -CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe-----cCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642 271 -QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-----SNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (368)
Q Consensus 271 -~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 342 (368)
.+++++++. . +||+...+.+..+.... .......+.+- ..+..|++-..+|.|++|.+-.-+++.+..
T Consensus 226 ~g~vVvvSe~-~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 226 PGYVVVVSES-D-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp -EEEEEE-SS-E-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred CcEEEEEccc-c-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 155555544 4 99999988877665553 22334445552 356678888899999999998877765443
No 363
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.011 Score=55.07 Aligned_cols=119 Identities=9% Similarity=0.080 Sum_probs=78.6
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 156 (368)
......|+..|.--++...+++++.|.+. .+.+|+-..+.... .... +....+.....+++..+++.++.. |
T Consensus 26 ~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~-~~~~~~~~~~vs~~e~lvAagt~~-----g 98 (726)
T KOG3621|consen 26 LLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE-GATGITCVRSVSSVEYLVAAGTAS-----G 98 (726)
T ss_pred hhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-cccc-CccceEEEEEecchhHhhhhhcCC-----c
Confidence 34445677778777888899999999954 49999865544332 2221 233334444555555555555554 8
Q ss_pred cEEEEeCCCCcE-----EEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCC
Q 017642 157 KVMIWDDHQSRC-----IGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD 203 (368)
Q Consensus 157 ~i~vwd~~~~~~-----~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~ 203 (368)
.|.++-++.+.+ +.... |...|++++|++|+..+. ..|+|.+-.+..
T Consensus 99 ~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 99 RVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 899888765422 11122 678999999999999888 357888777765
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.53 E-value=0.075 Score=50.13 Aligned_cols=235 Identities=10% Similarity=0.071 Sum_probs=124.5
Q ss_pred EEEEEe-CCeEEEEEecCCCcceEEEcccCCc--eeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-
Q 017642 99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS- 173 (368)
Q Consensus 99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~- 173 (368)
.++.++ ++.+.-.|.++++......+. ... ..+. .-....+.+++.+.+.+.. .+|.|.-+|.++|+.+-.+.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~~g~Vivg~~~~~~~-~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVVKGKVITGISGGEFG-VRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEECCEEEEeecccccC-CCcEEEEEECCCCceeEeccC
Confidence 344444 777888888777776554432 111 0111 1111233333332221100 12789999999998887654
Q ss_pred -cCC------------------------------cee-EEEEeeCccEEE--e------CC-----------cEEEEEcC
Q 017642 174 -FRS------------------------------EVR-SVKLRRDRIIVV--L------EQ-----------KIFVYNFA 202 (368)
Q Consensus 174 -~~~------------------------------~v~-~~~~~~~~~~l~--~------d~-----------~i~vwd~~ 202 (368)
... .++ .+.+.++..++. . ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 111 234555433333 1 11 67788999
Q ss_pred CCeEEEEEeccCCCe---------eEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeee--------e----eccC-c
Q 017642 203 DLKLLHQIETIANPK---------GLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKF--------I----MAHD-S 259 (368)
Q Consensus 203 ~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~--------~----~~~~-~ 259 (368)
+|+....++.....+ ..+.+..+|+..-++..+..+|.+.+ +..+++.+.. . .... .
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 999988776533222 12333346653223333678999998 5445554311 1 0000 0
Q ss_pred ce----------------------------EEEEECCCCCEEEEEeCC--------------------------------
Q 017642 260 RI----------------------------ACFALTQDGQLLATSSTK-------------------------------- 279 (368)
Q Consensus 260 ~i----------------------------~~v~~sp~g~~l~s~~~d-------------------------------- 279 (368)
++ ..++++|+..+++....+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 00 125566665544433222
Q ss_pred -CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 280 -GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 280 -g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
|. |.-+|+.+++.+-..... .+...-...-.+.+++.++.||.++.+|.++++..=
T Consensus 440 ~g~-l~AiD~~tGk~~W~~~~~---~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 440 MGS-LIAWDPITGKIVWEHKED---FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred cee-EEEEeCCCCceeeEecCC---CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 34 777888888877666532 111111122245577778889999999999998753
No 365
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.53 E-value=0.043 Score=51.42 Aligned_cols=191 Identities=13% Similarity=0.202 Sum_probs=101.0
Q ss_pred CCCEEEEEeCCeEEEEEecCCCcceEEEcccC---CceeEE--EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE
Q 017642 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERG---GGIGVV--EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG 170 (368)
Q Consensus 96 ~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~ 170 (368)
+++.++...++.+.-+|..+++.......... ....+. .+....++.+++... + +.|.-+|.++|+.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~-----g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-D-----GRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-C-----CeEEEEECCCCCEee
Confidence 34434433377788888877777655444211 000000 112222134444333 3 899999999999988
Q ss_pred EEecCCc------ee-EEEEeeCccEEE-e----------CCcEEEEEcCCCeEEEEEeccCCC----------------
Q 017642 171 ELSFRSE------VR-SVKLRRDRIIVV-L----------EQKIFVYNFADLKLLHQIETIANP---------------- 216 (368)
Q Consensus 171 ~~~~~~~------v~-~~~~~~~~~~l~-~----------d~~i~vwd~~~~~~~~~~~~~~~~---------------- 216 (368)
.+..... +. ...+. ++.+++ . ++.++.+|..+|+.+..+......
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred eecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 8773332 11 11222 344444 1 467899999999988877542110
Q ss_pred ----e-eEEEEecCCCeEEEEeecCCCC------------------eEEE-EecCcceeeeeec--cCc--------c-e
Q 017642 217 ----K-GLCAVSQGVGSLVLVCPGLQKG------------------QVRV-EHYASKRTKFIMA--HDS--------R-I 261 (368)
Q Consensus 217 ----v-~~~~~~~~~~~~~l~~~g~~dg------------------~i~i-~~~~~~~~~~~~~--~~~--------~-i 261 (368)
+ ...++.+.+..+++. +.++ .+.- +..+++.+-.+.. |.. + +
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg---~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~ 290 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVG---TGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSL 290 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEE---CCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeE
Confidence 0 012333334443332 2232 3433 5555555544331 110 0 1
Q ss_pred EEEEECCCCC---EEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642 262 ACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 262 ~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (368)
..+. .-+|. +++.++.+|. +...|.++|+.+....
T Consensus 291 ~~~~-~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~ 328 (488)
T cd00216 291 ADIK-PKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARP 328 (488)
T ss_pred Eecc-ccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeE
Confidence 1111 11343 6778888999 9999999999887765
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00031 Score=66.14 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=86.4
Q ss_pred eEEEEecCCCeEEEEee-cCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642 218 GLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~-g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (368)
+...|+|....+.+++- -...|.|.|+..++.+.....- .-.+++++|+|..-.|+.|-+-|. +.+|...+.+. ++
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccc-ceehhhhccChHHHHHhhccccce-eEEEecCCcee-ee
Confidence 34678887776555532 2346788887777764433321 112567999999888999999998 99998655443 34
Q ss_pred eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
+... |..+|..+.||++|..|+++..-|.|.+|.+....+..
T Consensus 96 v~~t-h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q 137 (1416)
T KOG3617|consen 96 VVET-HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ 137 (1416)
T ss_pred eccC-CCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc
Confidence 4432 88999999999999999999999999999998655543
No 367
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.01 Score=56.06 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=83.9
Q ss_pred cccCCCCCEEEEEEcCC-------------CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-----
Q 017642 80 TSSSPPPTLLHISFNQD-------------HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN----- 140 (368)
Q Consensus 80 ~~~~h~~~v~~~~~s~~-------------g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 140 (368)
....|.+.|.-..+.-+ |+++++|+ |+.|.|-.+.+.+......| . ..+.+++++|+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df--~--rpiksial~Pd~~~~~ 128 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF--K--RPIKSIALHPDFSRQQ 128 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec--C--CcceeEEeccchhhhh
Confidence 34567777766666544 99999999 77799998888777765555 2 34455556655
Q ss_pred eEEEEecCCCCCCCCCcEEEEeCC---CCcEEEEEe-cCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccCC
Q 017642 141 ILALVGGGPDPQYPLNKVMIWDDH---QSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIAN 215 (368)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~vwd~~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~~ 215 (368)
...+++|+.- | +.++.-+ ....+ .+. ..+.|.++.|..+-...+.|-.|++||+.+++.+..++....
T Consensus 129 sk~fv~GG~a-----g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 129 SKQFVSGGMA-----G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQ 200 (846)
T ss_pred hhheeecCcc-----e-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCC
Confidence 3456666653 5 7776532 11222 233 788999999975543334788999999999888877754443
No 368
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.52 E-value=0.066 Score=48.30 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=54.5
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE-ecC----------------CCE-EE
Q 017642 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF-SSN----------------AQW-LA 319 (368)
Q Consensus 258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~-sp~----------------~~~-l~ 319 (368)
...+.+|..+|++++.|+...-|+ |.++|+.++..++.+++.. +..+.=+.. ... ..+ ++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 345788999999998888877788 9999999998888877632 111111111 111 112 33
Q ss_pred EEeCCCeEEEEEccCCCCCC
Q 017642 320 VSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 320 s~s~dg~i~iwd~~~~~~~~ 339 (368)
-+-.-|.|.||+++++.+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred EeccCCeEEEEecCCCCEEE
Confidence 45578899999999987753
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0025 Score=57.21 Aligned_cols=137 Identities=20% Similarity=0.300 Sum_probs=93.8
Q ss_pred eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc---------EEE-eCCcEEEEEcCCC-e-EEE
Q 017642 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI---------IVV-LEQKIFVYNFADL-K-LLH 208 (368)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~-~d~~i~vwd~~~~-~-~~~ 208 (368)
.+.+.++... ..|+-.|++.|+.+.++.....|.-+.+.|+.+ ++. .|..|.-||.+-. + .+.
T Consensus 346 nlil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 346 NLILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ceEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 4445555554 789999999999999999666688888888642 222 6889999998632 2 222
Q ss_pred EEeccC----CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEE
Q 017642 209 QIETIA----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (368)
Q Consensus 209 ~~~~~~----~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i 283 (368)
..+.+. ....|.+-..+| ++++ |+.+|.|++++..+...+ .+.+-..+|..|..+.+|++|+..+. .. +
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG---~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-L 494 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG---YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-L 494 (644)
T ss_pred eeeccccccccccceeeecCCc---eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-E
Confidence 222222 233445555555 3554 789999999887665444 36788889999999999998765554 34 6
Q ss_pred EEEEC
Q 017642 284 RIFNT 288 (368)
Q Consensus 284 ~iwd~ 288 (368)
.+-++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 66665
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.42 E-value=0.051 Score=44.75 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=23.3
Q ss_pred EcCCCCEEEEEe-CCeEEEEEecCCCcceEEEc
Q 017642 93 FNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF 124 (368)
Q Consensus 93 ~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~ 124 (368)
..+++.++..|+ |+..+..|..+...++....
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 346788888888 77788888877776655443
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00099 Score=64.55 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=68.2
Q ss_pred cCCCCeEEEEecCccee--eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc-ccEEEEEE
Q 017642 235 GLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF 311 (368)
Q Consensus 235 g~~dg~i~i~~~~~~~~--~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~ 311 (368)
|+..|.+...+.++... ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..|..+.+
T Consensus 105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~ 183 (1206)
T KOG2079|consen 105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVIFVGR 183 (1206)
T ss_pred EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEEEEEE
Confidence 55677777744444322 222234578999999999999999999999 999999999988887763221 13334444
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 312 sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
..++..++++...|. +|.+.-.+
T Consensus 184 t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 184 TSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred eCCCcEEEEccCCCc--eEEEEech
Confidence 556667777777775 66665443
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.39 E-value=0.021 Score=40.65 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=59.5
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeE
Q 017642 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGL 219 (368)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 219 (368)
.-|+.++.| ..|++|+ ..+.+.++...+.|..+.-...+++.. .+|+|-+|+- .+.+..++....++..
T Consensus 16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM 86 (111)
T ss_pred ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence 445555666 9999998 447888888889999999888877666 6899999984 3445555544444333
Q ss_pred EEEecCCCeE-EEEeecCCCCeEE
Q 017642 220 CAVSQGVGSL-VLVCPGLQKGQVR 242 (368)
Q Consensus 220 ~~~~~~~~~~-~l~~~g~~dg~i~ 242 (368)
..+..+++.. -|+ .|-.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI-~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELI-VGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEE-EEecCCeEE
Confidence 3444443221 223 255677764
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.026 Score=50.99 Aligned_cols=133 Identities=14% Similarity=0.294 Sum_probs=86.3
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe----ecCCCCeEEEEecCcc---eeeeeecc----CcceE
Q 017642 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PGLQKGQVRVEHYASK---RTKFIMAH----DSRIA 262 (368)
Q Consensus 194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~----~g~~dg~i~i~~~~~~---~~~~~~~~----~~~i~ 262 (368)
..++-.|++.|+.+.....+.. |..+.+.|+.+.--+.. .|-.+..|.-|+...+ .+...+.| .....
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 5788889999999988876655 77777877765321110 1333444444443322 22222232 23455
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 263 ~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
|.+-..+| ++++|+.+|. ||+||- .+..-++ +++ -..+|..|..+.||++|++.+ +..|.+.++.
T Consensus 435 c~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 435 CFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 66655555 7999999999 999996 5544443 443 467899999999999987665 5667777764
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.36 E-value=0.014 Score=55.48 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=87.1
Q ss_pred CceeEEEEeeCccEEE--e-------CC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC--------
Q 017642 176 SEVRSVKLRRDRIIVV--L-------EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL-------- 236 (368)
Q Consensus 176 ~~v~~~~~~~~~~~l~--~-------d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~-------- 236 (368)
..+...+++++|..++ . |. .|.+++. .+.. +.+.. ......-.|+|+|+.++++..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577889999998887 2 33 4555564 2333 33322 22367789999988766554210
Q ss_pred -CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEE---EECCCCce-e---EeeEeccCcccEEE
Q 017642 237 -QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI---FNTLDGTL-L---QEVRRGADRAEIYS 308 (368)
Q Consensus 237 -~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~i---wd~~~~~~-~---~~~~~~~~~~~v~~ 308 (368)
..+.+.+...+...... ...+.|..+.|||||+.|+... +|. |.| -....|+. + ..+... -...+.+
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPG-LGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecc-cCCcccc
Confidence 11222221111111111 2345799999999999888766 466 777 44445541 1 112211 2233688
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
+.|..++.++ ++..++...+|.+.-....
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCcc
Confidence 9999999855 5555555566766554443
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.32 E-value=0.086 Score=45.26 Aligned_cols=218 Identities=16% Similarity=0.224 Sum_probs=115.7
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE----
Q 017642 95 QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG---- 170 (368)
Q Consensus 95 ~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~---- 170 (368)
..++.|+.|+++|+.++++...... .... ....+..+...++...++.-.+ +.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~-~~i~---~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKP-TRIL---KLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccc-eeEe---ecceEEEEEEecccCEEEEEcC------CccEEEEchhhcccccccc
Confidence 4578899999888999998322221 1221 2223667766664433333222 789999987543333
Q ss_pred -----------EEecCCceeEEE---EeeCccEEE--eCCcEEEEEcCCC-----eEEEEEeccCCCeeEEEEecCCCeE
Q 017642 171 -----------ELSFRSEVRSVK---LRRDRIIVV--LEQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 171 -----------~~~~~~~v~~~~---~~~~~~~l~--~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
.+.....+...+ -......++ ...+|.+|..... +..+.+.. ...+..++|. ++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKI 151 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEE
Confidence 222334455555 112233444 5778888887542 45556543 3566677777 4443
Q ss_pred EEEeecCCCCeEEEEecCcceeeee--ec----------cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE--
Q 017642 230 VLVCPGLQKGQVRVEHYASKRTKFI--MA----------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ-- 295 (368)
Q Consensus 230 ~l~~~g~~dg~i~i~~~~~~~~~~~--~~----------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~-- 295 (368)
++ |..++...++..++.....+ .. ...++..+... ++.+|++-. .. -.+.| ..|+..+
T Consensus 152 ~v---~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~--~~-g~fv~-~~G~~~r~~ 223 (275)
T PF00780_consen 152 CV---GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD--NI-GVFVN-KNGEPSRKS 223 (275)
T ss_pred EE---EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEec--ce-EEEEc-CCCCcCccc
Confidence 33 33455555544433222221 11 11234444443 456665432 22 23334 4555443
Q ss_pred eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (368)
Q Consensus 296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 339 (368)
.+.- ...+.++++. ..+|++.+. +.|.||++.+++-..
T Consensus 224 ~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 224 TIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred EEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 2332 2355666664 357777665 459999999986543
No 376
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.27 E-value=0.22 Score=48.76 Aligned_cols=227 Identities=13% Similarity=0.196 Sum_probs=133.6
Q ss_pred CEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEE-ecCCCC--------CCCCCcEEEEeCCCCcE
Q 017642 98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDP--------QYPLNKVMIWDDHQSRC 168 (368)
Q Consensus 98 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~--------~~~~~~i~vwd~~~~~~ 168 (368)
..|+.+..+.+++.-++..+....+++ .-......+++.+....+. .+.+-. .+.-..++++|-++.+.
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 356666667788887776666555554 2333444556655333222 221110 01113577888777766
Q ss_pred EEEEe--cCC---ceeEEEEeeC-ccEEE-------------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec-CCCe
Q 017642 169 IGELS--FRS---EVRSVKLRRD-RIIVV-------------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVGS 228 (368)
Q Consensus 169 ~~~~~--~~~---~v~~~~~~~~-~~~l~-------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 228 (368)
+...+ ... .|.++.|..| +.+++ ..|.|.+|.+..++.++.+..+.-.-...++.- +|+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngk- 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGK- 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCe-
Confidence 65544 222 3444557766 44444 158899999877554444432221111223322 333
Q ss_pred EEEEeecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeEeeEeccCccc
Q 017642 229 LVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGADRAE 305 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~~~~ 305 (368)
++|. -+..|+++.++.+ .++.-..|..++..+...-.|..++.|..-++ +.+...+.. ... ++....+..+
T Consensus 842 -llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~W 915 (1096)
T KOG1897|consen 842 -LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNW 915 (1096)
T ss_pred -EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccc
Confidence 4443 4678999666665 44444567788999998889999999998887 776655443 344 4444446778
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
++++.+-.+..+ +.+..+|.+++-..++
T Consensus 916 mtaveil~~d~y-lgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 916 MTAVEILDDDTY-LGAENSGNLFTVRKDS 943 (1096)
T ss_pred eeeEEEecCceE-EeecccccEEEEEecC
Confidence 888888755544 4556788888777654
No 377
>PRK10115 protease 2; Provisional
Probab=97.23 E-value=0.24 Score=48.49 Aligned_cols=239 Identities=11% Similarity=0.048 Sum_probs=117.5
Q ss_pred CEEEEEEcCCCCEEEEEeCC-e-----EEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCCcE
Q 017642 87 TLLHISFNQDHGCFAAGTDH-G-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKV 158 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~-~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~i 158 (368)
.+..+.|+|||++|+.+.|. + |++.|+.++... ...+. ... ..+.|.+ +.+++.....+ ......|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~-~~~---~~~~w~~D~~~~~y~~~~~~-~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLD-NVE---PSFVWANDSWTFYYVRKHPV-TLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Ccccc-Ccc---eEEEEeeCCCEEEEEEecCC-CCCCCEE
Confidence 46778999999999887732 2 777887765422 12221 111 2355554 44444443211 1122679
Q ss_pred EEEeCCCC--cEEEEEe-cCCcee-EEEEeeCccEEE------eCCcEEEEEc--CCCeEEEEEeccCCCeeEEEEecCC
Q 017642 159 MIWDDHQS--RCIGELS-FRSEVR-SVKLRRDRIIVV------LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGV 226 (368)
Q Consensus 159 ~vwd~~~~--~~~~~~~-~~~~v~-~~~~~~~~~~l~------~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (368)
+.+++.++ +....+. ...... .+..+.++.+++ .++.+.+++. .+++....+....+... .+...+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY--SLDHYQ 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE--EEEeCC
Confidence 99999888 4444444 222233 333344777665 3578999995 23432222222222222 222334
Q ss_pred CeEEEEeec-CCCCeEEEEecC-cceeeeeecc-C-cceEEEEECCCCCEEEEEeCCCc-EEEEEECCCCceeEeeEecc
Q 017642 227 GSLVLVCPG-LQKGQVRVEHYA-SKRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTLLQEVRRGA 301 (368)
Q Consensus 227 ~~~~l~~~g-~~dg~i~i~~~~-~~~~~~~~~~-~-~~i~~v~~sp~g~~l~s~~~dg~-~i~iwd~~~~~~~~~~~~~~ 301 (368)
+.+++.+.. .....|...+.. ......+..+ . ..|..+.+. .+.++++...+|. .+.++|...+ .+..+...
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~- 356 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD- 356 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC-
Confidence 555555421 112222222222 2222344444 2 368888887 3345556666664 1444554333 33344311
Q ss_pred CcccEEEEEEe--cCCC-EEEEEe---CCCeEEEEEccCCC
Q 017642 302 DRAEIYSLAFS--SNAQ-WLAVSS---DKGTVHVFNLKVNS 336 (368)
Q Consensus 302 ~~~~v~~l~~s--p~~~-~l~s~s---~dg~i~iwd~~~~~ 336 (368)
....+..+.++ +++. ++++.+ .-+.++.+|+.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 12233334444 3443 444333 35678888887754
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.22 E-value=0.15 Score=46.83 Aligned_cols=198 Identities=10% Similarity=0.099 Sum_probs=102.3
Q ss_pred EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---e-----------CCcEE
Q 017642 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L-----------EQKIF 197 (368)
Q Consensus 132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~-----------d~~i~ 197 (368)
+..+.+++++..++-+-....-....|+++|+.+|+.+...-.......+.|.+++..++ . ...|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 335677777665442211000001469999999997765432222233499999987766 1 22488
Q ss_pred EEEcCCCeE--EEEEeccCCC--eeEEEEecCCCeEEEEeecCCC-CeEEEEecCc-----ceeeeeeccCcceE-EEEE
Q 017642 198 VYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS-----KRTKFIMAHDSRIA-CFAL 266 (368)
Q Consensus 198 vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~~l~~~g~~d-g~i~i~~~~~-----~~~~~~~~~~~~i~-~v~~ 266 (368)
.|.+.+... ...+...... ...+..+.|++.+++.+....+ ..+.+-+... .....+......+. .+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 888866532 2444444433 4567889999987765544444 4566533332 23344444433343 3433
Q ss_pred CCCCCEEEEEeC---CCcEEEEEECCCCce---eEeeEeccCcccEEEEEEecCCCEEE-EEeCCC--eEEEEEcc
Q 017642 267 TQDGQLLATSST---KGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKG--TVHVFNLK 333 (368)
Q Consensus 267 sp~g~~l~s~~~---dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg--~i~iwd~~ 333 (368)
. .+.+++.... ++. |.-.++.+... ...+..+.....+..+... +.+|+ ....++ .|+++++.
T Consensus 286 ~-~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp E-TTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred c-CCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence 3 4444443332 345 66677776552 2234432112245555543 44444 444554 48889988
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.02 E-value=9.5e-05 Score=67.36 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=98.5
Q ss_pred ccccCCCCCEEEEEEcC-CCCEEEEEeC-----CeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642 79 STSSSPPPTLLHISFNQ-DHGCFAAGTD-----HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~d-----~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 150 (368)
.....|....++++|++ |..+||+|-| ..+.|||+.+. .......|..+.......++|..+...+.+|...
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 34556777889999987 5678888863 33999999765 1111122221122223355666666666666554
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEee-CccEEE--eCCcEEEEE-cCCCe-EEEEEec----cCCCeeEEE
Q 017642 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LEQKIFVYN-FADLK-LLHQIET----IANPKGLCA 221 (368)
Q Consensus 151 ~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~--~d~~i~vwd-~~~~~-~~~~~~~----~~~~v~~~~ 221 (368)
..+.++|++........-....+..+.+.| .+.+++ .||.|-+|| .++-+ .++.+.. ....+..++
T Consensus 176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a 250 (783)
T KOG1008|consen 176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA 250 (783)
T ss_pred -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence 789999987432211111345677788888 677777 799999999 33322 2222211 122478899
Q ss_pred EecCCCeEEEEeecCCCCeEEEEec
Q 017642 222 VSQGVGSLVLVCPGLQKGQVRVEHY 246 (368)
Q Consensus 222 ~~~~~~~~~l~~~g~~dg~i~i~~~ 246 (368)
|+|....++.++ .-..++|++++.
T Consensus 251 ycPtrtglla~l-~RdS~tIrlydi 274 (783)
T KOG1008|consen 251 YCPTRTGLLAVL-SRDSITIRLYDI 274 (783)
T ss_pred eccCCcchhhhh-ccCcceEEEecc
Confidence 999887655554 345677777554
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.16 Score=42.75 Aligned_cols=180 Identities=9% Similarity=0.042 Sum_probs=100.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~ 164 (368)
..|.++.|+|+.+.|.+..++.-.|-.+.+ ++......+. .-...-.+.+..++.++++..++ +.+.++.+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~-----~~l~~~~vd 158 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERD-----RALYLFTVD 158 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhc-----ceEEEEEEc
Confidence 349999999999988877766644444443 3333333332 22223356677888888888887 888888766
Q ss_pred CCcEEE-------EEe---c-CCceeEEEEeeCccEEE---eCCcEEEEEcCCCe-E--EEEEecc-------CCCeeEE
Q 017642 165 QSRCIG-------ELS---F-RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-L--LHQIETI-------ANPKGLC 220 (368)
Q Consensus 165 ~~~~~~-------~~~---~-~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~-~--~~~~~~~-------~~~v~~~ 220 (368)
.+..+. .+. + +.....++|.+....+. .-.-+.||.+.... . ......+ -..+..+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 542221 111 2 55788999999655444 34445555543221 0 1111111 1234567
Q ss_pred EEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCc---------ceEEEEECCCCCEEE
Q 017642 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS---------RIACFALTQDGQLLA 274 (368)
Q Consensus 221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~---------~i~~v~~sp~g~~l~ 274 (368)
.|.+..+.+++.+ .+++.+.--+..+..+..+.-+.+ ....|+..++|.+.+
T Consensus 239 ~~~~~~~~LLVLS--~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 239 EFNAITNSLLVLS--DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred eecCCCCcEEEEe--cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 7777776655543 345555446666655444332211 234677777776433
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.01 E-value=0.003 Score=37.48 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=30.0
Q ss_pred cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 303 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
...|..++|+|...+||.++.+|.|.+|++ +.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999999 4443
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.91 E-value=0.18 Score=48.15 Aligned_cols=186 Identities=10% Similarity=0.050 Sum_probs=96.7
Q ss_pred CCEEEEEEcCCCCEEEEEe-------CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCC--CC----
Q 017642 86 PTLLHISFNQDHGCFAAGT-------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD--PQ---- 152 (368)
Q Consensus 86 ~~v~~~~~s~~g~~l~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~---- 152 (368)
..+...+++|||+.++... |..-.||-...+... ...+. +. ....-.|++++..+....+. ..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 3678899999999886654 333455544333322 12221 22 25556666664333222110 00
Q ss_pred -CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEE---EEcCCCeE-E---EEEec-cCCCeeEEE
Q 017642 153 -YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFV---YNFADLKL-L---HQIET-IANPKGLCA 221 (368)
Q Consensus 153 -~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~v---wd~~~~~~-~---~~~~~-~~~~v~~~~ 221 (368)
-..+.+.+.++..++... ...+.|..+.|+|||..++ .++.|++ -....|.. + +.+.. ....+..+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 011455555665554433 4456799999999999888 6888877 44344531 1 11222 222346788
Q ss_pred EecCCCeEEEEeecCCCCeEEEEecCcceeeeeec--cCcceEEEEECCCCCEEEEEeCCCc
Q 017642 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGT 281 (368)
Q Consensus 222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~ 281 (368)
|..++. ++++. ...+..+..-..++.....+.. ...++..|+-+++ .|+....+|.
T Consensus 504 W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 504 WRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred EecCCE-EEEEe-cCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 888887 34433 2223334333333433222222 2456777776653 3444555553
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.89 E-value=0.21 Score=41.90 Aligned_cols=190 Identities=12% Similarity=0.119 Sum_probs=110.7
Q ss_pred EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCc--eeEEEEeeCccEEE--eCCcEE
Q 017642 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE--VRSVKLRRDRIIVV--LEQKIF 197 (368)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~--~d~~i~ 197 (368)
..+.|......-.+.|..++.++-+.+.. ....|+.+|+.+++.......... -..++...|..+.. .++...
T Consensus 37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEE--TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EECCCCCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 44555666667778884554555444432 224799999999998877763333 34555555555555 699999
Q ss_pred EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec-Ccceeeeeec--cC---cceEEEEECCCCC
Q 017642 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMA--HD---SRIACFALTQDGQ 271 (368)
Q Consensus 198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~--~~---~~i~~v~~sp~g~ 271 (368)
+||..+.+.+.++.-. +.-..++ .|++.+++ +.| ...+++.+. +.+....+.. .. ..++.+.|- +|.
T Consensus 114 ~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~-SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIM-SDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEETTTTEEEEEEE-S-SS--EEE--ECSSCEEE-E-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEccccceEEEEEecC-CcceEEE--cCCCEEEE-ECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 9999999998888543 3334444 67776443 323 345555443 3334443332 22 235566765 676
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEeeEec-------------cCcccEEEEEEecCCCEEEEEe
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRG-------------ADRAEIYSLAFSSNAQWLAVSS 322 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~l~~sp~~~~l~s~s 322 (368)
+.|=.=.... |...|..+|+.+..+... ....-.+.|++.|....|...+
T Consensus 187 IyANVW~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6666655566 888899999888766421 0124578999998776555444
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.86 E-value=0.38 Score=45.52 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=100.0
Q ss_pred EEEEEe-CCeEEEEEecCCCcceEEEcccCCce-eE-------EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642 99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-GV-------VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (368)
Q Consensus 99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~ 169 (368)
.|.+++ ++.|.-+|..+++............. .. ..+....+.+++.+ .| +.|.-+|.++|+.+
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t--~d-----g~l~ALDa~TGk~~ 143 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT--LD-----ARLVALDAKTGKVV 143 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc--CC-----CEEEEEECCCCCEE
Confidence 333333 56677677776666655433200000 00 11223333333333 23 88999999999998
Q ss_pred EEEecCC-----ceeEEEEeeCccEEE-e-------CCcEEEEEcCCCeEEEEEeccCCC--------------------
Q 017642 170 GELSFRS-----EVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP-------------------- 216 (368)
Q Consensus 170 ~~~~~~~-----~v~~~~~~~~~~~l~-~-------d~~i~vwd~~~~~~~~~~~~~~~~-------------------- 216 (368)
....... .+.+.-.--++.+++ . +|.|+-+|.++|+.+..+......
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 7765211 122211112455555 1 578999999999988765432110
Q ss_pred -----------e-eEEEEecCCCeEEEEeecC---------------CCCeEEEEecCcceeeeeec--cCc-------c
Q 017642 217 -----------K-GLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKFIMA--HDS-------R 260 (368)
Q Consensus 217 -----------v-~~~~~~~~~~~~~l~~~g~---------------~dg~i~i~~~~~~~~~~~~~--~~~-------~ 260 (368)
+ ..+++.+..+.+++.+ |. .+..|.|+..+++..-.++. |.. .
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 0 0134444444444443 32 11334445555655554443 211 1
Q ss_pred eEEEEECCCCC---EEEEEeCCCcEEEEEECCCCcee
Q 017642 261 IACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL 294 (368)
Q Consensus 261 i~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~ 294 (368)
..-+.+..+|+ .++.+..+|. +.+.|.++|+.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence 11122334676 7889999999 999999999886
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.80 E-value=0.0055 Score=36.36 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=30.4
Q ss_pred CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (368)
Q Consensus 258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~ 294 (368)
...|.+++|+|...+||.++.+|. |.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence 346899999999999999999999 999998 66543
No 386
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.66 E-value=0.43 Score=42.34 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=111.0
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCC---CCC--------------
Q 017642 91 ISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ-------------- 152 (368)
Q Consensus 91 ~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---d~~-------------- 152 (368)
..++++.+.++... .+.++-.|+++.+......+. ..-.....+..+.+...++.... |..
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC-cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 45678888776554 567888888887766555553 33333334443444443333211 100
Q ss_pred CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc-EEE--e-------CCcEEEEEcCCCeEEEEEecc--CCCeeEE
Q 017642 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVV--L-------EQKIFVYNFADLKLLHQIETI--ANPKGLC 220 (368)
Q Consensus 153 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~--~-------d~~i~vwd~~~~~~~~~~~~~--~~~v~~~ 220 (368)
-....|.-.|+.+|+....+.....+..+.|+|..- +++ - |..|.+.+. .+...+.+..+ ...+..=
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccc
Confidence 123467778999998877777888899999999543 333 1 334444443 34333333222 2234445
Q ss_pred EEecCCCeEEEEe--ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC----------------cE
Q 017642 221 AVSQGVGSLVLVC--PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG----------------TL 282 (368)
Q Consensus 221 ~~~~~~~~~~l~~--~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg----------------~~ 282 (368)
-|.+||..+.... .|..+..|.-.+........+... .....+-.++||++++-=+.|. .
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~- 321 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW- 321 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------E-
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE-
Confidence 6899998765532 122222333333333222222211 2344555678998776433331 3
Q ss_pred EEEEECCCCceeEeeEecc--------Cc-ccEEEEEEecCCCEEEEE-eCCCeEEEEEccCC
Q 017642 283 VRIFNTLDGTLLQEVRRGA--------DR-AEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKVN 335 (368)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~--------~~-~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~ 335 (368)
|+++++..++.. .+..+. +. ..=-...|+|||++++-. ...|...||-++-+
T Consensus 322 i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 322 IYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred EEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 667888766543 222210 00 012467899999987655 46787777766544
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.2 Score=42.04 Aligned_cols=156 Identities=11% Similarity=0.066 Sum_probs=99.2
Q ss_pred CCCcEEEEEecCCceeEEEEeeCccEEE----e-CCcEEEEEcCCCeEEEEEeccCCC--eeEEEEecCCCeEEEEeecC
Q 017642 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV----L-EQKIFVYNFADLKLLHQIETIANP--KGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~-d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~g~ 236 (368)
+.|+++...........|+++|.....+ . .....++|....+...++....+. ...=.|++||..++ ++-+.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd 134 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND 134 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence 5677777777777778889988644333 2 446789999888777666443332 23347999998654 33222
Q ss_pred C---CCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCC------------------CcEEEEEECCCCce
Q 017642 237 Q---KGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTK------------------GTLVRIFNTLDGTL 293 (368)
Q Consensus 237 ~---dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d------------------g~~i~iwd~~~~~~ 293 (368)
. -|.|-|++.+. ..+-.+..|.-....+.|.+||+.|+.+... -+ +.+.|..+|+.
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l 213 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL 213 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence 2 36777777664 3445577787778889999999988876531 11 33445455555
Q ss_pred eEeeEec--cCcccEEEEEEecCCCEEEEE
Q 017642 294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 294 ~~~~~~~--~~~~~v~~l~~sp~~~~l~s~ 321 (368)
+.+.... .+.-.|..++..+||..++.+
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 4332211 234467888888888776654
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.56 E-value=0.16 Score=36.24 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=61.5
Q ss_pred EecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (368)
Q Consensus 222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (368)
|.-+|..-+++ |+.|..|+++... ..+..+.. ...|+++.-... ..++.+-.+|+ |-+|+- .+.+..++.
T Consensus 10 ~d~dg~~eLlv--Gs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~--~~RlWRiKS-- 79 (111)
T PF14783_consen 10 FDGDGENELLV--GSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGG-GRFAYALANGT-VGVYDR--SQRLWRIKS-- 79 (111)
T ss_pred cCCCCcceEEE--ecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCC-CEEEEEecCCE-EEEEeC--cceeeeecc--
Confidence 34455554443 7899999997655 33444443 345777766655 56899999999 999974 344445553
Q ss_pred CcccEEEEEEec---CC-CEEEEEeCCCeEE
Q 017642 302 DRAEIYSLAFSS---NA-QWLAVSSDKGTVH 328 (368)
Q Consensus 302 ~~~~v~~l~~sp---~~-~~l~s~s~dg~i~ 328 (368)
+..+.++.+.. || .-|++|-.+|.|-
T Consensus 80 -K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 -KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 23466666543 33 2688888888774
No 389
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.45 E-value=0.14 Score=46.34 Aligned_cols=80 Identities=15% Similarity=0.278 Sum_probs=55.7
Q ss_pred eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc------CcccEEEEEEec-----CC---CE
Q 017642 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA------DRAEIYSLAFSS-----NA---QW 317 (368)
Q Consensus 252 ~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~sp-----~~---~~ 317 (368)
..+....++|++++.|.-| ++|.|.++|. +.|.|++....++.-.... ....|+++.|+- |+ -.
T Consensus 80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 3455568899999997444 9999999999 9999998887776633221 234688888862 33 36
Q ss_pred EEEEeCCCeEEEEEcc
Q 017642 318 LAVSSDKGTVHVFNLK 333 (368)
Q Consensus 318 l~s~s~dg~i~iwd~~ 333 (368)
|++|+..|.+.+|.+.
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 8889999999999985
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.015 Score=46.84 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=67.3
Q ss_pred cCCCCeEEEEecCc--ceeeeeeccCcceEEE-EECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc-ccEEEEE
Q 017642 235 GLQKGQVRVEHYAS--KRTKFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLA 310 (368)
Q Consensus 235 g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v-~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~ 310 (368)
|..+|.|++|.... .....+..-...|.++ .--.++.+..+++.||. |+.|++.-++.+-..-. |. .++..+.
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~i 152 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEELI 152 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCcceeE
Confidence 77899999965552 2222222222233332 22235568889999999 99999988877744433 44 5666666
Q ss_pred EecCCCEEEEE--eCCCeEEEEEccCCCCC
Q 017642 311 FSSNAQWLAVS--SDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 311 ~sp~~~~l~s~--s~dg~i~iwd~~~~~~~ 338 (368)
.+..++.++.+ |.|..++.|++..-...
T Consensus 153 vv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 153 VVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred EecCCceEEeeccccchhhhhcchhhhhcc
Confidence 77777888887 88889999998765543
No 391
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.15 Score=40.64 Aligned_cols=103 Identities=9% Similarity=0.065 Sum_probs=65.1
Q ss_pred CCCEEEEEe-CC--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE
Q 017642 96 DHGCFAAGT-DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL 172 (368)
Q Consensus 96 ~g~~l~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~ 172 (368)
+|.++.+.+ .+ .|++||+.+++......+. ......-.+.-..+..+..+-.+ |.-..+|..+-+++..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccc
Confidence 455555554 33 3999999998888777763 22222223334456666666544 88899999999999988
Q ss_pred ecCCceeEEEEeeCccEEEeCCc--EEEEEcCCCeE
Q 017642 173 SFRSEVRSVKLRRDRIIVVLEQK--IFVYNFADLKL 206 (368)
Q Consensus 173 ~~~~~v~~~~~~~~~~~l~~d~~--i~vwd~~~~~~ 206 (368)
...+.-+.++..... ++..||+ ++.-|.++...
T Consensus 128 ~y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 128 SYEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred ccCCcceeeecCCcc-eEeeCCceEEEecCHHHhhh
Confidence 877777777654433 3335654 45455554433
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.31 E-value=0.4 Score=40.60 Aligned_cols=120 Identities=20% Similarity=0.159 Sum_probs=73.5
Q ss_pred CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE-CCCCcee
Q 017642 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLL 294 (368)
Q Consensus 216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd-~~~~~~~ 294 (368)
.+...+++++++.+.++..+.....+++..........+.+ ..+....|++++...+....+.. .+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence 56778999999875554422233445555444433333332 36788899999887777666666 66663 3333322
Q ss_pred -EeeEeccCcccEEEEEEecCCCEEEEEe---CCCeEEEEEccCCCCC
Q 017642 295 -QEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGS 338 (368)
Q Consensus 295 -~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~dg~i~iwd~~~~~~~ 338 (368)
..+......+.|..+.+||||..++... .++.|.|=-+......
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 1222211112799999999999877654 4578888877654443
No 393
>PRK10115 protease 2; Provisional
Probab=96.23 E-value=1.4 Score=43.33 Aligned_cols=200 Identities=7% Similarity=-0.037 Sum_probs=100.9
Q ss_pred eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---e--C----CcEEEEE
Q 017642 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L--E----QKIFVYN 200 (368)
Q Consensus 130 ~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~--d----~~i~vwd 200 (368)
..+..+.+++++..++-+.+........|++.|+.+|+.+...-.... ..++|.+|+..++ . + ..|+.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 445567778877665544322111224789999988864322211111 4589999887665 2 2 3688889
Q ss_pred cCCC--eEEEEEeccCCCeeE-EEEecCCCeEEEEeecCCCCeEEEEec---CcceeeeeeccC-cceEEEEECCCCCEE
Q 017642 201 FADL--KLLHQIETIANPKGL-CAVSQGVGSLVLVCPGLQKGQVRVEHY---ASKRTKFIMAHD-SRIACFALTQDGQLL 273 (368)
Q Consensus 201 ~~~~--~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~g~~dg~i~i~~~---~~~~~~~~~~~~-~~i~~v~~sp~g~~l 273 (368)
+.++ +....+......... ...+.+++.+++.+....++.+.+++. .... ..+..+. .....+. +..+.++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEE-eCCCEEE
Confidence 8877 333444433333332 233447877766655555667777552 2221 2222222 2222222 3233333
Q ss_pred EEEeCCC-c-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 274 ATSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 274 ~s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+....++ . .|...++........+........|..+.+. .+.++++...+|.-+++-+.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3332222 2 1433444421222333332123468888887 33455666677775555544
No 394
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.21 E-value=0.23 Score=45.14 Aligned_cols=144 Identities=10% Similarity=0.201 Sum_probs=87.1
Q ss_pred eCccEEEeC----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC-------eEEEEeecCCCCeEEEEecC-cceee
Q 017642 185 RDRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-------SLVLVCPGLQKGQVRVEHYA-SKRTK 252 (368)
Q Consensus 185 ~~~~~l~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~l~~~g~~dg~i~i~~~~-~~~~~ 252 (368)
.+..++..| ..++-.|++.|+.+.....+... .+.+.|..+ ..++. -+..+..+|+.+- +..+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvG--lS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVG--LSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEe--ecccceEEecccccCCcee
Confidence 344555533 46888889999999888776654 466776542 11222 2456667774433 33332
Q ss_pred eeeccCcceEEEEECC----CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642 253 FIMAHDSRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328 (368)
Q Consensus 253 ~~~~~~~~i~~v~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~ 328 (368)
... .....+.-.|+. ...|+|.++..|. |++||.-.-.....+++ -...|..+..+.+|+++++.+. ..|.
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceEE
Confidence 221 122222222332 3348999999999 99999543332333443 4568999999999999887664 4688
Q ss_pred EEEccCCCC
Q 017642 329 VFNLKVNSG 337 (368)
Q Consensus 329 iwd~~~~~~ 337 (368)
+-|+.-...
T Consensus 628 L~d~~ik~g 636 (776)
T COG5167 628 LTDVPIKYG 636 (776)
T ss_pred EEecccccC
Confidence 888764433
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.21 E-value=0.68 Score=45.26 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=52.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~ 166 (368)
.|..|.+|++|++||..+..+|.|-.+-..-.. ...++ ++...+.|-.+.-+..++.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~-~~~~~-~g~~~i~Crt~~v~~~~~~--------------------- 142 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGK-NGEFE-DGKKEINCRTVPVDERFFT--------------------- 142 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCc-ccccc-CCCcceeEEEEEechhhcc---------------------
Confidence 799999999999999999888888776421000 01122 2233333222211111111
Q ss_pred cEEEEEecCCceeEEEEeeCc---cEE-E--eCCcEEEEEcCCC
Q 017642 167 RCIGELSFRSEVRSVKLRRDR---IIV-V--LEQKIFVYNFADL 204 (368)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~~---~~l-~--~d~~i~vwd~~~~ 204 (368)
-.....|..+.|+|.+ ..+ + .|+++++||+...
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1133457788898853 333 3 7999999999654
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.35 Score=47.89 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=66.8
Q ss_pred CCCCEEEEEeCCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 017642 95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173 (368)
Q Consensus 95 ~~g~~l~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~ 173 (368)
-.+..++.|++++ +-..|+...-....+. ......|.+++|+.++..++.|-.+ |.|.+||+..++..+.+.
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n--e~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQN--ERVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcC--CccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcceeeee
Confidence 3466788888666 7777765432211122 1456789999999999999988776 999999999999988887
Q ss_pred -cCCceeEE---EEeeCccEEE-eCCcEEEEEc
Q 017642 174 -FRSEVRSV---KLRRDRIIVV-LEQKIFVYNF 201 (368)
Q Consensus 174 -~~~~v~~~---~~~~~~~~l~-~d~~i~vwd~ 201 (368)
+..+..++ .+..++..+. .|..=.+|.+
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 55544443 3444555343 4433336665
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.10 E-value=1.4 Score=42.18 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=41.1
Q ss_pred CCCEEEEEeCCC------cEEEEEECCC-Cc--eeEeeEeccCcccEEEEEEecCCCEEEEEeCCC--eEEEEEccCCCC
Q 017642 269 DGQLLATSSTKG------TLVRIFNTLD-GT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNSG 337 (368)
Q Consensus 269 ~g~~l~s~~~dg------~~i~iwd~~~-~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg--~i~iwd~~~~~~ 337 (368)
+|++.+.|+.++ . +..||..+ .+ .+..+.. .......+. -+|++.++|+.++ .+..||..+.+=
T Consensus 463 ~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--ccccceeEE--ECCEEEEEeeecceeehhhcCcccccc
Confidence 577777777542 3 67899876 33 2333332 111222222 2678888998888 788888888776
Q ss_pred CCC
Q 017642 338 SAR 340 (368)
Q Consensus 338 ~~~ 340 (368)
..-
T Consensus 538 ~~~ 540 (557)
T PHA02713 538 NHI 540 (557)
T ss_pred cch
Confidence 543
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.87 E-value=0.78 Score=37.47 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeE--------EEEEEeCCeE-EEEecCCCCCCC
Q 017642 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGV--------VEMLFRCNIL-ALVGGGPDPQYP 154 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~s~~~d~~~~ 154 (368)
..+.+.-..+|+|++++... |-+- +++.....+...+. +|.... ..++|+.+.. +....+.+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~---~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln---- 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGD---DLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN---- 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccc---cccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEccCc----
Confidence 34455556789999854333 4331 22222222222221 222211 2345554433 33333333
Q ss_pred CCcEEEEe--CCCCc-----EEEEEec-----CCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeE
Q 017642 155 LNKVMIWD--DHQSR-----CIGELSF-----RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGL 219 (368)
Q Consensus 155 ~~~i~vwd--~~~~~-----~~~~~~~-----~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 219 (368)
-+|.-|| ..+|. .+..++. .-.--.+++..+|.+.+ ..++|...|..+|+.+.++......+++
T Consensus 180 -~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 180 -YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred -eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 5776677 55553 2333321 11234556666777665 5789999999999999999988889999
Q ss_pred EEEec
Q 017642 220 CAVSQ 224 (368)
Q Consensus 220 ~~~~~ 224 (368)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99854
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.70 E-value=0.21 Score=47.46 Aligned_cols=105 Identities=11% Similarity=0.142 Sum_probs=71.0
Q ss_pred EEcCCCCEEEEEeCCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC------
Q 017642 92 SFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------ 164 (368)
Q Consensus 92 ~~s~~g~~l~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~------ 164 (368)
.-+.-++..++..++. +.|||...........+.....+.-++|...+++..+.+.+-. +.|.+|--.
T Consensus 36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQLRYDYTN 110 (631)
T ss_pred eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEccchhhhc
Confidence 3344455444444444 9999998877777777743445555566667788777777665 788888531
Q ss_pred ---CCcEEEEEe---c-CCceeEEEEeeCccEEE-eCCcEEEEEc
Q 017642 165 ---QSRCIGELS---F-RSEVRSVKLRRDRIIVV-LEQKIFVYNF 201 (368)
Q Consensus 165 ---~~~~~~~~~---~-~~~v~~~~~~~~~~~l~-~d~~i~vwd~ 201 (368)
....++.+. + ..+|.+..|.++|.+++ .++.++|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 123444443 3 37899999999999998 7889999984
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.70 E-value=1.8 Score=40.36 Aligned_cols=111 Identities=10% Similarity=0.103 Sum_probs=67.5
Q ss_pred CCCEEEEEEcCCC-----CEEEEEeCCeEEEEEecC-----CCcceEEEcccCCc--eeEEEEEEeCCeEEEEecCCCCC
Q 017642 85 PPTLLHISFNQDH-----GCFAAGTDHGFRIYNCDP-----FREIFRRDFERGGG--IGVVEMLFRCNILALVGGGPDPQ 152 (368)
Q Consensus 85 ~~~v~~~~~s~~g-----~~l~~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~d~~ 152 (368)
-..|..+.|.|-+ .+||+-..+.|.||.+.. .+....+..+.... .---.+.|+|....++.-..
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~--- 132 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA--- 132 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec---
Confidence 3469999999853 477887788899999852 22222222221122 22235667776654443322
Q ss_pred CCCCcE-EEEeCC--CCcEEEEEecCCceeEEEEeeCccEEE--eCC--cEEEEEc
Q 017642 153 YPLNKV-MIWDDH--QSRCIGELSFRSEVRSVKLRRDRIIVV--LEQ--KIFVYNF 201 (368)
Q Consensus 153 ~~~~~i-~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~--~i~vwd~ 201 (368)
..+ .++++. .......++..+.|.|.+|.+||..++ .+. .-++||-
T Consensus 133 ---~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 133 ---RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ---CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 223 344443 334445566889999999999998877 232 5678875
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.68 E-value=1.6 Score=39.47 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=72.5
Q ss_pred cCCCCEEEEEe---C----CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC------CC-------
Q 017642 94 NQDHGCFAAGT---D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------QY------- 153 (368)
Q Consensus 94 s~~g~~l~~~~---d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~------~~------- 153 (368)
-|+|++++++- + +++.++|-++.+..-.............++.+.+....+++..... .|
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 37898877653 2 2378888766555433222223345566777888776666654321 00
Q ss_pred --CCCcEEEEeCCCCcEEEEEecC---CceeEEEEeeC--ccEEE----eCCcEEEEEc-CCCe----EEEEEecc----
Q 017642 154 --PLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRD--RIIVV----LEQKIFVYNF-ADLK----LLHQIETI---- 213 (368)
Q Consensus 154 --~~~~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~--~~~l~----~d~~i~vwd~-~~~~----~~~~~~~~---- 213 (368)
-..++.+||+.+.+.++++... .....+.|..+ ..+-+ ...+|..|-- +.++ .+-.+...
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 1368999999999999999832 34667777654 22211 3445544433 3332 12222111
Q ss_pred -------------CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc
Q 017642 214 -------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (368)
Q Consensus 214 -------------~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~ 248 (368)
..-++.+.+|.|.+.+++.+ -..|.|+.++.+.
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~--W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSN--WLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEE--TTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEc--ccCCcEEEEecCC
Confidence 23467899999999888765 4689999977654
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.17 Score=50.31 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=85.6
Q ss_pred CCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEE-----EEe------ccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642 175 RSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLH-----QIE------TIANPKGLCAVSQGVGSLVLVCPGLQK 238 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~~~~l~~~g~~d 238 (368)
.-.+..+...+|+...+ .+-.|..||+++..... -+. ....-..++.|.|.-....++ ...|
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av--~l~d 177 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV--DLSD 177 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh--hccc
Confidence 44566777777766554 23479999997643211 111 111223456666655433333 3468
Q ss_pred CeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--CcccEEEEEEecC
Q 017642 239 GQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSN 314 (368)
Q Consensus 239 g~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~ 314 (368)
+.|++..... ..+.. ..-....++++|+|.|+.++.|-..|+ +.-|. ..++....+.+.. ....|.+|+|-..
T Consensus 178 lsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred cchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecc
Confidence 8888743332 22222 133456899999999999999999999 77775 3455444444321 1357999999877
Q ss_pred CCEEEEE
Q 017642 315 AQWLAVS 321 (368)
Q Consensus 315 ~~~l~s~ 321 (368)
..+|++-
T Consensus 255 ~eflvvy 261 (1405)
T KOG3630|consen 255 QEFLVVY 261 (1405)
T ss_pred eeEEEEe
Confidence 7776654
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.61 E-value=0.39 Score=44.54 Aligned_cols=148 Identities=8% Similarity=-0.023 Sum_probs=84.4
Q ss_pred CCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC---eEEEEeecCCCCeEEEEec
Q 017642 175 RSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---SLVLVCPGLQKGQVRVEHY 246 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~g~~dg~i~i~~~ 246 (368)
-.++.+++|......+. .+|.+++=|- +.+. ....|..+.|.|-+. --++|. .....|.||..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viG----qFEhV~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIG----QFEHVHGLSWAPPCTADTPALLAV--QHKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEee----ccceeeeeeecCcccCCCCceEEE--eccceEEEEEe
Confidence 34677888864333333 2555554442 2232 233567788888632 134554 25678888876
Q ss_pred Ccc------eeeeeeccC-c----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642 247 ASK------RTKFIMAHD-S----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (368)
Q Consensus 247 ~~~------~~~~~~~~~-~----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 315 (368)
... .+.....+- . --..+.|+|...+|++-..... -.+++++........... ..+.|.|.+|.+||
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG 167 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK-TSGLIHCACWTKDG 167 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc-CCceEEEEEecCcC
Confidence 521 111111111 1 1245779999998888777664 456666543322222222 46789999999999
Q ss_pred CEEEEEe-CCCeEEEEEcc
Q 017642 316 QWLAVSS-DKGTVHVFNLK 333 (368)
Q Consensus 316 ~~l~s~s-~dg~i~iwd~~ 333 (368)
+.|+++- ..=.-+|||=.
T Consensus 168 ~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CEEEEEeCCeEEEEEecCc
Confidence 9887663 33346678743
No 404
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.51 E-value=2.9 Score=41.45 Aligned_cols=214 Identities=12% Similarity=0.210 Sum_probs=118.6
Q ss_pred EEEEEecCCCcceEEEccc-CCceeEEEEEEeCC-eE-EEEecCCC-C---CCCCCcEEEEeCCCCcE---EEEEecCCc
Q 017642 108 FRIYNCDPFREIFRRDFER-GGGIGVVEMLFRCN-IL-ALVGGGPD-P---QYPLNKVMIWDDHQSRC---IGELSFRSE 177 (368)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~s~~~d-~---~~~~~~i~vwd~~~~~~---~~~~~~~~~ 177 (368)
++++|-++.+......+.. .....+.+..|..+ .. ++++.+.- + .-..|.|.++....++. +.+....+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 6667666555544434420 11223333445543 33 33332210 0 01236777777666332 333335666
Q ss_pred eeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE--EecCcceeeee
Q 017642 178 VRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFI 254 (368)
Q Consensus 178 v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~ 254 (368)
+.++..- +|++++ -+..|++|+..+++.++.-..+..++..+.+.-.++.+++ |..-+.+.+ +.........+
T Consensus 832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V---gDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV---GDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE---eeccceEEEEEEeccCCceEEe
Confidence 6666543 677777 7899999999888777776677888888999888886443 445566666 33333223222
Q ss_pred --eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-------------------CceeEeeEeccCcccEEEE--EE
Q 017642 255 --MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------------------GTLLQEVRRGADRAEIYSL--AF 311 (368)
Q Consensus 255 --~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-------------------~~~~~~~~~~~~~~~v~~l--~~ 311 (368)
.-+....+++.+-.+. .++-+..+|. +.+-...+ |+.+..++ |..-|..+ .-
T Consensus 908 ArD~~p~Wmtaveil~~d-~ylgae~~gN-lf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~---hg~lv~~~~~s~ 982 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDD-TYLGAENSGN-LFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR---HGSLVMQLGDSM 982 (1096)
T ss_pred ehhhCccceeeEEEecCc-eEEeeccccc-EEEEEecCCCCchhhhhcccceeeEEeccceeeee---ecceEeeccccc
Confidence 2356677777776444 4455566666 66654332 22333333 33333331 22
Q ss_pred ecCCCEEEEEeCCCeEEEE
Q 017642 312 SSNAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 312 sp~~~~l~s~s~dg~i~iw 330 (368)
+|-+..++.|..+|.|-+-
T Consensus 983 ~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 983 IPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred cCCCCcEEEEEccceEEEE
Confidence 3444557788888887654
No 405
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.51 E-value=0.61 Score=44.93 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=70.5
Q ss_pred eeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------c--------------eeeeeeccCcceEEEEEC--CCCCEE
Q 017642 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------K--------------RTKFIMAHDSRIACFALT--QDGQLL 273 (368)
Q Consensus 217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~--------------~~~~~~~~~~~i~~v~~s--p~g~~l 273 (368)
|+.+.+..-|..-+|++ +..||.|.+|.... . +...+ .-...+++++++ ...++|
T Consensus 103 IN~i~v~~lg~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 44454444444444444 56899999985421 0 00111 123468899998 777788
Q ss_pred EEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCC---C---EEEEEeCCCeEEEEEcc
Q 017642 274 ATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA---Q---WLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 274 ~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~---~---~l~s~s~dg~i~iwd~~ 333 (368)
|+++.... |.||-.... +.......+.+...|-+|+|-++. . .|++++-.|.+.+|++.
T Consensus 181 AVSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 88888777 888865442 111111122245578999997644 2 77788899999998883
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.48 E-value=0.019 Score=55.08 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=84.1
Q ss_pred cCCceeEEEEeeCc-cEE-EeCCcEEEEEcC--CCeEEEEE-----eccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-
Q 017642 174 FRSEVRSVKLRRDR-IIV-VLEQKIFVYNFA--DLKLLHQI-----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV- 243 (368)
Q Consensus 174 ~~~~v~~~~~~~~~-~~l-~~d~~i~vwd~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i- 243 (368)
..+.|-.+.|..-. ..+ ..-|.+.|||+. .|+....+ ......+..+.|+|---.-..+|.|..++.+++
T Consensus 131 f~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL 210 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLL 210 (1283)
T ss_pred CCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEe
Confidence 55666666664321 111 134667777763 34332222 222333445556553222133444788899998
Q ss_pred -EecCcceeeeeeccCcceEEE-----------EECCCCCEEEEEeCCCcEEEEEECC-----CCceeEeeEeccCc-cc
Q 017642 244 -EHYASKRTKFIMAHDSRIACF-----------ALTQDGQLLATSSTKGTLVRIFNTL-----DGTLLQEVRRGADR-AE 305 (368)
Q Consensus 244 -~~~~~~~~~~~~~~~~~i~~v-----------~~sp~g~~l~s~~~dg~~i~iwd~~-----~~~~~~~~~~~~~~-~~ 305 (368)
|+.... ..+.+|...+..+ ..+|||+.+++++.||. +++|.+. ...+++..+. |. .+
T Consensus 211 ~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkp--hd~~p 285 (1283)
T KOG1916|consen 211 NINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKP--HDKHP 285 (1283)
T ss_pred eechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCC--CCCCC
Confidence 554433 4455676655443 36899999999999998 8887653 3345555555 33 23
Q ss_pred EEEEEEecCC---------CEEEEEe-CCCeEEEEEcc
Q 017642 306 IYSLAFSSNA---------QWLAVSS-DKGTVHVFNLK 333 (368)
Q Consensus 306 v~~l~~sp~~---------~~l~s~s-~dg~i~iwd~~ 333 (368)
-.|.-|+.+. .++++++ .+..+++|...
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 3233243221 2344544 34558888654
No 407
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.39 E-value=1.6 Score=37.81 Aligned_cols=232 Identities=14% Similarity=0.126 Sum_probs=106.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEccc---CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw 161 (368)
...+..|.|..+..-+++|..+. |+....+.......... ........+.|..+..++++ . ..+.+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~-------~g~ll~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-E-------PGLLLH 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-E-------TTEEEE
T ss_pred CCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-C-------CceEEE
Confidence 44789999997677777777664 35554444433322110 11234566777776655544 2 234444
Q ss_pred eCCCCcEEEEEe----cCCceeEEEEeeCccEEE-e-CCcEEEEEcCC-CeEE-EEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 162 DDHQSRCIGELS----FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFAD-LKLL-HQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 162 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~-~-d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
-.+.|+.=..+. ..+....+....++..++ . .|. ||-..+ |+.= .......+.+..+..+++|.. +++
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~--vav 161 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRY--VAV 161 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-E--EEE
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcE--EEE
Confidence 434454333322 233444444444444333 2 233 333333 3221 122334456677777888874 443
Q ss_pred ecCCCCeEEE-EecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEE-CCCCceeEe--eEeccCcccEEE
Q 017642 234 PGLQKGQVRV-EHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLLQE--VRRGADRAEIYS 308 (368)
Q Consensus 234 ~g~~dg~i~i-~~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd-~~~~~~~~~--~~~~~~~~~v~~ 308 (368)
+ ..|.+.+ |+.....-... ..-...|..|.|.|++.+.+.+ ..|. |++=+ ....+.... .......-.+.+
T Consensus 162 -s-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld 237 (302)
T PF14870_consen 162 -S-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILD 237 (302)
T ss_dssp -E-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred -E-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEE
Confidence 2 4677777 76554322222 2345689999999998865544 6776 77776 222222211 111112235899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
++|.+++...++|+ .|.+ +...+.++
T Consensus 238 ~a~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 238 LAYRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp EEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred EEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 99999888887665 4433 33444343
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.38 E-value=3.2 Score=41.13 Aligned_cols=140 Identities=13% Similarity=0.198 Sum_probs=77.1
Q ss_pred CcEEEEeCCCCcEEEEEecCCcee-------------EEEEee---CccEEEe------------CCcEEEEEcCCCeEE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVR-------------SVKLRR---DRIIVVL------------EQKIFVYNFADLKLL 207 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~l~~------------d~~i~vwd~~~~~~~ 207 (368)
+.|.-.|.++|+.+..+...+.|. .+.-.| ++.+++. +|.|+-+|.++|+.+
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 899999999999987765433321 011111 4444441 478999999999998
Q ss_pred EEEeccC---------CC--------e-eEEEEecCCCeEEEEeecC-----------------CCCeEEEEecCcceee
Q 017642 208 HQIETIA---------NP--------K-GLCAVSQGVGSLVLVCPGL-----------------QKGQVRVEHYASKRTK 252 (368)
Q Consensus 208 ~~~~~~~---------~~--------v-~~~~~~~~~~~~~l~~~g~-----------------~dg~i~i~~~~~~~~~ 252 (368)
..+.... +. + ...++.+....+++-. |. .+..+.++..+++..-
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence 8775210 00 0 1233333333333321 11 1122223444444444
Q ss_pred eeec-cC-c-------ceEEEEECC-CCC---EEEEEeCCCcEEEEEECCCCceeEee
Q 017642 253 FIMA-HD-S-------RIACFALTQ-DGQ---LLATSSTKGTLVRIFNTLDGTLLQEV 297 (368)
Q Consensus 253 ~~~~-~~-~-------~i~~v~~sp-~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (368)
.++. |. - ...-+.+.- +|+ .++.++.+|. +.++|.++|+.+...
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVPV 485 (764)
T ss_pred EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEeec
Confidence 4432 11 0 011122222 563 7889999999 999999999887654
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.35 E-value=0.37 Score=47.04 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=53.8
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEEECCC----------Cce---eEeeE------eccCcccEEEEEEecC---CC
Q 017642 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTL---LQEVR------RGADRAEIYSLAFSSN---AQ 316 (368)
Q Consensus 259 ~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~----------~~~---~~~~~------~~~~~~~v~~l~~sp~---~~ 316 (368)
-.|..|.++++|++|+..|..| |.|..+.. |+. .+.+. .......|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3688999999999999998877 55555532 111 11111 1113457899999996 47
Q ss_pred EEEEEeCCCeEEEEEccCCC
Q 017642 317 WLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 317 ~l~s~s~dg~i~iwd~~~~~ 336 (368)
.|++-..|++||+||+...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999997544
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.14 E-value=1.6 Score=39.31 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=74.4
Q ss_pred CceeEEEEeeCccEEEeC---------------CcEEEEEcCC--Ce--EEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642 176 SEVRSVKLRRDRIIVVLE---------------QKIFVYNFAD--LK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (368)
Q Consensus 176 ~~v~~~~~~~~~~~l~~d---------------~~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~ 236 (368)
.....|+|.++|++++.+ +.|.+++-.+ |+ ....+.........+++.+++ ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~--- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT--- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence 446678888888877732 2676666432 33 223343333344667887777 44432
Q ss_pred CCCeEEEEecCc------c--eee-eeec----cCcceEEEEECCCCCEEEEEeCC-------------------CcEEE
Q 017642 237 QKGQVRVEHYAS------K--RTK-FIMA----HDSRIACFALTQDGQLLATSSTK-------------------GTLVR 284 (368)
Q Consensus 237 ~dg~i~i~~~~~------~--~~~-~~~~----~~~~i~~v~~sp~g~~l~s~~~d-------------------g~~i~ 284 (368)
.....++.+.++ + .+. .+.. +......++|.|||++.++-+.. |. |.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EE
Confidence 334344433322 1 111 1211 23447789999999866654421 33 45
Q ss_pred EEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (368)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 322 (368)
-+|...++ +..+..+ -.....++|+++|+++++-.
T Consensus 168 r~~pdg~~-~e~~a~G--~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGK-LRVVAHG--FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEecCCCe-EEEEecC--cCCCccceECCCCCEEEEcc
Confidence 55544433 2233321 23457899999999887644
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.11 E-value=1.8 Score=36.68 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=81.9
Q ss_pred eEEEEEEeCCe--EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEE-cCCC
Q 017642 131 GVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYN-FADL 204 (368)
Q Consensus 131 ~~~~~~~~~~~--~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd-~~~~ 204 (368)
.+.+.+.++++ .+++....+ ...|+++.. +...........+..-.|++++.+.+ .+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~----~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDG----GRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCC----CCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 34455555544 444441121 145666653 33333332444788889999987766 244555553 3333
Q ss_pred eEE-EEEecc--CCCeeEEEEecCCCeEEEEeecCCCCeEEEE--ec--Cc------ceeeeeeccCcceEEEEECCCCC
Q 017642 205 KLL-HQIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE--HY--AS------KRTKFIMAHDSRIACFALTQDGQ 271 (368)
Q Consensus 205 ~~~-~~~~~~--~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~--~~--~~------~~~~~~~~~~~~i~~v~~sp~g~ 271 (368)
+.. ..+... ...|..+.+++||..+.++.....++.|.+- .. .+ ............+..++|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 322 222222 1279999999999998888755567888772 11 22 01111123345789999999998
Q ss_pred EEEEEeCCCc
Q 017642 272 LLATSSTKGT 281 (368)
Q Consensus 272 ~l~s~~~dg~ 281 (368)
+++.+...+.
T Consensus 179 L~V~~~~~~~ 188 (253)
T PF10647_consen 179 LVVLGRSAGG 188 (253)
T ss_pred EEEEeCCCCC
Confidence 7776655443
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.08 E-value=0.13 Score=29.56 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=25.3
Q ss_pred cceEEEEECCCCC---EEEEEeCCCcEEEEEECCC
Q 017642 259 SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 259 ~~i~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~ 290 (368)
+.|+++.|+|+.. +|+.+-.-|. |.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 3689999998544 8888777788 99999985
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.07 E-value=1.5 Score=41.96 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCCCeEEEEecCcceeeeee--ccCcceEEEEEC--CCCCEEEEEeCCCcEEEEEECC---------CCceeEeeEeccC
Q 017642 236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTL---------DGTLLQEVRRGAD 302 (368)
Q Consensus 236 ~~dg~i~i~~~~~~~~~~~~--~~~~~i~~v~~s--p~g~~l~s~~~dg~~i~iwd~~---------~~~~~~~~~~~~~ 302 (368)
+....+.||+........-. ...+.|..+.|. |+|+.+++.+-... |.++--. +...+..+.-..+
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~ 126 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKIDISSH 126 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEEEeecC
Confidence 34567888998876543322 346789999886 68887777777777 8888532 1234444432222
Q ss_pred c-ccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 303 R-AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 303 ~-~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
. .+|.+..|.++|.+++.+ ++.+.|+|-.-
T Consensus 127 T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred CCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence 2 579999999999877654 35688887533
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=1.6 Score=35.15 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=91.2
Q ss_pred EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC-CceeEEEEe--eCccEEE--eCCcEEEEEcCCCeEE
Q 017642 133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLR--RDRIIVV--LEQKIFVYNFADLKLL 207 (368)
Q Consensus 133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~--~d~~i~vwd~~~~~~~ 207 (368)
..+.+..+ ..+.+.+. |....|++||+.+|+.+..-.-. ..+..=-.. .|..+.. .+|....+|.++.+++
T Consensus 49 QGL~~~~g-~i~esTG~---yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~l 124 (262)
T COG3823 49 QGLEYLDG-HILESTGL---YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEEL 124 (262)
T ss_pred cceeeeCC-EEEEeccc---cccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhh
Confidence 34455555 33333332 22367999999999888776522 233222222 2333333 5899999999888877
Q ss_pred EEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-Ee--cCcceeeeee--ccC---cceEEEEECCCCCEEEEEeCC
Q 017642 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EH--YASKRTKFIM--AHD---SRIACFALTQDGQLLATSSTK 279 (368)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~--~~~~~~~~~~--~~~---~~i~~v~~sp~g~~l~s~~~d 279 (368)
..+.- .+. ...+..|++.+++. ||.-.+ |. .+.....++. ... ..++.+.|- ||.++|-.=.+
T Consensus 125 g~~~y-~Ge--GWgLt~d~~~Lims-----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t 195 (262)
T COG3823 125 GRFSY-EGE--GWGLTSDDKNLIMS-----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT 195 (262)
T ss_pred ccccc-CCc--ceeeecCCcceEee-----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee
Confidence 66542 222 23455677664331 444444 21 1111111111 111 123334443 56555544444
Q ss_pred CcEEEEEECCCCceeEeeEe----------ccCcccEEEEEEecCC-CEEEEE
Q 017642 280 GTLVRIFNTLDGTLLQEVRR----------GADRAEIYSLAFSSNA-QWLAVS 321 (368)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~----------~~~~~~v~~l~~sp~~-~~l~s~ 321 (368)
.. |...|..+|+.+..+.. ..+..-.+.+++.|++ +++++|
T Consensus 196 ~~-I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TR-IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cc-eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44 56666666666554432 1134467889999987 455555
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=3.1 Score=40.05 Aligned_cols=194 Identities=12% Similarity=0.118 Sum_probs=98.8
Q ss_pred EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE--E--e-cCCceeEEE
Q 017642 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L--S-FRSEVRSVK 182 (368)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~--~--~-~~~~v~~~~ 182 (368)
|+||+... ... ...+. .+. .++.|-|+.+...++-.-. |++.+|++.. +.+.. . . ....|..+.
T Consensus 66 I~If~~sG-~lL-~~~~w-~~~-~lI~mgWs~~eeLI~v~k~------g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 66 IRIFNISG-QLL-GRILW-KHG-ELIGMGWSDDEELICVQKD------GTVHVYGLLG-EFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred EEEEeccc-cch-HHHHh-cCC-CeeeecccCCceEEEEecc------ceEEEeecch-hhhcccccccccccCceeEEE
Confidence 77777542 222 12221 233 7889999988777666543 9999999643 32222 2 1 334566667
Q ss_pred EeeCccEEE-eCCcEEEEEcCCCeEEEEEec-cCCCe--eEEEEecCCCeEEEEe-ecCCCCeEEE-EecCcceeeeeec
Q 017642 183 LRRDRIIVV-LEQKIFVYNFADLKLLHQIET-IANPK--GLCAVSQGVGSLVLVC-PGLQKGQVRV-EHYASKRTKFIMA 256 (368)
Q Consensus 183 ~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~-~~~~v--~~~~~~~~~~~~~l~~-~g~~dg~i~i-~~~~~~~~~~~~~ 256 (368)
+..+|..+. .+|.+.+-+-.....++.+.. ..... .+....+++....+.. ..-..+.... -.........+..
T Consensus 135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 767777666 566666554322222333322 11111 2222223322111111 0000010000 0111111112222
Q ss_pred cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (368)
Q Consensus 257 ~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 314 (368)
....+..+..||+.++|+--...|. |.+-++...+...++....|. .-..++|.-+
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 2355788899999999999999999 988888777766666633222 2235555543
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=2.2 Score=36.29 Aligned_cols=193 Identities=9% Similarity=0.092 Sum_probs=112.6
Q ss_pred CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEc
Q 017642 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNF 201 (368)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~ 201 (368)
+....+.++.|+++...+++..+. ..-.|+=..+|+.+.++. .-.....+.+..+|.+++ .++.++++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCC-----CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 444558899999987776665554 556666668899999887 445667788889999888 3677887777
Q ss_pred CCCeEEE-------EEe---ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce--e--eeeecc-------Ccc
Q 017642 202 ADLKLLH-------QIE---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--T--KFIMAH-------DSR 260 (368)
Q Consensus 202 ~~~~~~~-------~~~---~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~--~--~~~~~~-------~~~ 260 (368)
.....+. .+. ........++|.+..+.++++- +-.-+.|+..+... + .....+ -..
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 5442111 111 1133456799999998877653 34445553322211 1 111111 234
Q ss_pred eEEEEECCC-CCEEEEEeCCCcEEEEEECCCCceeEeeEe--ccCc-----ccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642 261 IACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADR-----AEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 261 i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~~~~-----~~v~~l~~sp~~~~l~s~s~dg~i~iw 330 (368)
|.++.|++. +.+|+-+.+++. +.-.|. +|+.+..+.. +.|. ..-..|+...+|.+.++ |+-+-.+.+
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv-SEPnlfy~F 309 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV-SEPNLFYRF 309 (316)
T ss_pred cccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE-ecCCcceec
Confidence 677888864 446666666666 777774 4554444332 2111 12345777776664443 455534333
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.84 E-value=2.7 Score=37.27 Aligned_cols=236 Identities=14% Similarity=0.073 Sum_probs=114.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCc-ceEEEc---ccCCceeEEEEEEeC-----CeEEEEecCCCCCCCC--
Q 017642 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE-IFRRDF---ERGGGIGVVEMLFRC-----NILALVGGGPDPQYPL-- 155 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~s~~~d~~~~~-- 155 (368)
.-+.|+|.|||++|++-..+.|++++ ..+.. .....+ ..........+++++ ..++++....+.....
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 45789999999988876677799998 33232 111111 124566788999998 3444444421000000
Q ss_pred CcEEEEeCCCC-------cEEE-EEec----CCceeEEEEeeCccEEE--e--------------CCcEEEEEcCCCeE-
Q 017642 156 NKVMIWDDHQS-------RCIG-ELSF----RSEVRSVKLRRDRIIVV--L--------------EQKIFVYNFADLKL- 206 (368)
Q Consensus 156 ~~i~vwd~~~~-------~~~~-~~~~----~~~v~~~~~~~~~~~l~--~--------------d~~i~vwd~~~~~~- 206 (368)
..|.-|....+ +.+. .+.. ...-..|.|.|||.+.+ . .|.|.-.+. +++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DGSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TSSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cCcCC
Confidence 23443443332 1111 1112 34456799999997766 1 133444443 2220
Q ss_pred ------------EEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCc------------------------
Q 017642 207 ------------LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYAS------------------------ 248 (368)
Q Consensus 207 ------------~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~------------------------ 248 (368)
...+ .++.+ ...++|.+....++.+-.| .++.=.| ....+
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0111 12222 2358888884444444323 3332223 11111
Q ss_pred -----ceeeeeeccCcceEEEEECC-------CCCEEEEEeCCCcEEEEEECCCCceeEeeEe--ccCcccEEEEEEecC
Q 017642 249 -----KRTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSN 314 (368)
Q Consensus 249 -----~~~~~~~~~~~~i~~v~~sp-------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~ 314 (368)
.++..+..| ..+..+.|-. .|.++++.-..+. |....+..+..+..... ......+..|++.||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 011112223 4456666653 3445555554555 77777764433322211 113347999999999
Q ss_pred CCEEEEEeCCCeEE
Q 017642 315 AQWLAVSSDKGTVH 328 (368)
Q Consensus 315 ~~~l~s~s~dg~i~ 328 (368)
|.++++-..+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99988888888764
No 418
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.72 E-value=1.9 Score=34.98 Aligned_cols=150 Identities=20% Similarity=0.172 Sum_probs=80.5
Q ss_pred eeEEEEee-CccEEE-eCCcEEEEEcC--CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC---eEEE---EecC
Q 017642 178 VRSVKLRR-DRIIVV-LEQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG---QVRV---EHYA 247 (368)
Q Consensus 178 v~~~~~~~-~~~~l~-~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg---~i~i---~~~~ 247 (368)
...++-.. |-.+++ ....|.+|++. ..+.+..|..- +.|..+.++..|++++.+=.-.... .+|+ |...
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 33444444 444454 67789999987 34556666543 6788899999998744432211222 4455 5443
Q ss_pred c---ceee-eeecc---------------------CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-e-----Ee
Q 017642 248 S---KRTK-FIMAH---------------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-L-----QE 296 (368)
Q Consensus 248 ~---~~~~-~~~~~---------------------~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~-----~~ 296 (368)
. ..+. .+-+| ...+.+++-.|-.--|+.|+.+ . +.||.+..... . ..
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~-l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-K-LVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-E-EEEEEEEEEEEecccccEEe
Confidence 1 1111 12121 2345677777743345556654 4 88997754332 1 11
Q ss_pred eEe----ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 297 VRR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 297 ~~~----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
|.. +...-....++|. +.++|..+ +-.++++.+.
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred chhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 111 0011234566665 45777665 5568888764
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.67 E-value=0.14 Score=29.43 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=25.5
Q ss_pred ccEEEEEEecCC---CEEEEEeCCCeEEEEEccC
Q 017642 304 AEIYSLAFSSNA---QWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 304 ~~v~~l~~sp~~---~~l~s~s~dg~i~iwd~~~ 334 (368)
+.|.++.|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999854 4788777789999999985
No 420
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.78 Score=46.58 Aligned_cols=156 Identities=15% Similarity=0.279 Sum_probs=90.2
Q ss_pred cCCceeEEEEeeC-cc-EEEeCCcEEEEEcCCCeEEEEEeccCCCeeEEEE--------ecCCCeEEEEeecCCCCeEEE
Q 017642 174 FRSEVRSVKLRRD-RI-IVVLEQKIFVYNFADLKLLHQIETIANPKGLCAV--------SQGVGSLVLVCPGLQKGQVRV 243 (368)
Q Consensus 174 ~~~~v~~~~~~~~-~~-~l~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~l~~~g~~dg~i~i 243 (368)
+...-..+-+-|. ++ ++..|+.+.+|+.+++.....+.+....|-.+.+ -+.=++++++++ --.|.+
T Consensus 77 ~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVI 153 (1311)
T ss_pred CcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEE
Confidence 3333444555553 33 3337999999999987766777665555544432 333345444432 222333
Q ss_pred ----EecCccee------eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEE--EECCCC---c-e--------------
Q 017642 244 ----EHYASKRT------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI--FNTLDG---T-L-------------- 293 (368)
Q Consensus 244 ----~~~~~~~~------~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~i--wd~~~~---~-~-------------- 293 (368)
.+...... ..+......|+|+....+|+++++|- ||. |.= |....+ + +
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv 231 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLV 231 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhh
Confidence 11111111 12223355788999888888766555 444 331 221111 1 0
Q ss_pred --eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 294 --LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 294 --~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
+..+. +.+..+|..++.....+.|.+-++.|+|.+|++...
T Consensus 232 Ps~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 232 PSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 11122 225678999999888889999999999999999874
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.24 E-value=0.18 Score=40.82 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=57.9
Q ss_pred CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-
Q 017642 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS- 173 (368)
Q Consensus 97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~- 173 (368)
+.-|++|+ ++.|.+|+.........+.. .....+..+.... +....+.+..+ |.|+.|++.-++.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~d-----g~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQD-----GRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccC-----CceeeeccccCceeeeecc
Confidence 34566666 88899998763332221111 2222333333333 33344555555 999999998888777666
Q ss_pred cC-CceeEEEEeeCccEEE-----eCCcEEEEEcCC
Q 017642 174 FR-SEVRSVKLRRDRIIVV-----LEQKIFVYNFAD 203 (368)
Q Consensus 174 ~~-~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~ 203 (368)
|. ..+........+.++. .|..++.|++..
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 55 4555555555554444 366777777754
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.17 E-value=0.38 Score=39.62 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=50.8
Q ss_pred ECCCCCEEEEEeCCCcEEEEEECCCCceeEee------Eec------cCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV------RRG------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (368)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~------~~~------~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 333 (368)
+..++.+|++.+.+|. +++||+.+++.+..- -.. .....|..+.++.+|.-+++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3447889999999999 999999988765432 100 1345788999999998877765 5678888876
Q ss_pred CCC
Q 017642 334 VNS 336 (368)
Q Consensus 334 ~~~ 336 (368)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 654
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.14 E-value=1.5 Score=40.06 Aligned_cols=137 Identities=15% Similarity=0.214 Sum_probs=86.4
Q ss_pred eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc--------cEEE--eCCcEEEEEcCC-CeEEEE
Q 017642 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--------IIVV--LEQKIFVYNFAD-LKLLHQ 209 (368)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~--~d~~i~vwd~~~-~~~~~~ 209 (368)
.+.+..++.. ..++-.|++.|+.+.++.....| -+.+.|+. ..++ ++..|.-.|.+- |..+..
T Consensus 480 sli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 480 SLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred ceEEecCCCc-----ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 3444455544 78888999999999999955555 66777753 2233 677777777653 333322
Q ss_pred Eec----cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee-eeeeccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642 210 IET----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (368)
Q Consensus 210 ~~~----~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~ 284 (368)
.+. ......+..-...| ++|+ ++..|.|+++++-+... ..+.+....|..|..+.+|+++++.+.. . +.
T Consensus 554 ~esKdY~tKn~Fss~~tTesG---yIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y-ll 627 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESG---YIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y-LL 627 (776)
T ss_pred eeehhccccccccccccccCc---eEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-EE
Confidence 221 11122222222233 4555 77899999976655443 4467778889999999999977766654 3 77
Q ss_pred EEECC
Q 017642 285 IFNTL 289 (368)
Q Consensus 285 iwd~~ 289 (368)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77764
No 424
>PHA02713 hypothetical protein; Provisional
Probab=94.06 E-value=5.8 Score=37.99 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=20.0
Q ss_pred CCCEEEEEeCCC--cEEEEEECCCCcee
Q 017642 269 DGQLLATSSTKG--TLVRIFNTLDGTLL 294 (368)
Q Consensus 269 ~g~~l~s~~~dg--~~i~iwd~~~~~~~ 294 (368)
+|++.++|+.+| . +..||..+.+-.
T Consensus 512 ~~~iyv~Gg~~~~~~-~e~yd~~~~~W~ 538 (557)
T PHA02713 512 DNTIMMLHCYESYML-QDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeeecceee-hhhcCccccccc
Confidence 788899999888 6 788888776644
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.91 E-value=3.7 Score=35.21 Aligned_cols=204 Identities=11% Similarity=0.075 Sum_probs=113.3
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC------CC-cEEEEEe------cCCceeEEEEeeCccE-----
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------QS-RCIGELS------FRSEVRSVKLRRDRII----- 189 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~------~~-~~~~~~~------~~~~v~~~~~~~~~~~----- 189 (368)
.-...+.++++|.+.+.++.... +...+||.. .. ..+..+. .....+.+.|+....+
T Consensus 21 ~L~N~WGia~~p~~~~WVadngT-----~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 21 GLRNAWGLSYRPGGPFWVANTGT-----GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred cccccceeEecCCCCEEEecCCc-----ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 33456778888877777766655 889999976 12 2233332 1346777777753322
Q ss_pred --------EE--eCCcEEEEEcCCCeE-----EEEEec-cCCCe-eEEEEecC--CCeEEEEeecCCCCeEEEEecCcce
Q 017642 190 --------VV--LEQKIFVYNFADLKL-----LHQIET-IANPK-GLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKR 250 (368)
Q Consensus 190 --------l~--~d~~i~vwd~~~~~~-----~~~~~~-~~~~v-~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~~~~~ 250 (368)
|. .||+|.-|.-.-+.. ...+.. ....+ ..+++... ++.++ ++ --..++|.+++..-.+
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LY-aa-dF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLY-AA-NFRQGRIDVFKGSFRP 173 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEE-Ee-ccCCCceEEecCcccc
Confidence 22 588888888522211 122221 12233 34566544 34433 32 4568888887666554
Q ss_pred eeeeeccCc--------c--e---------EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642 251 TKFIMAHDS--------R--I---------ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (368)
Q Consensus 251 ~~~~~~~~~--------~--i---------~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 311 (368)
+..-..... + | +-..-.++++.=+.|..-|. |-+||+ .|+.++++.....-..-+.|+.
T Consensus 174 ~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~-VdvFd~-~G~l~~r~as~g~LNaPWG~a~ 251 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY-VNVFTL-NGQLLRRVASSGRLNAPWGLAI 251 (336)
T ss_pred ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce-EEEEcC-CCcEEEEeccCCcccCCceeee
Confidence 322111111 0 1 11111222222233344567 999995 7888888864323345677777
Q ss_pred ec------CCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642 312 SS------NAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 312 sp------~~~~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
.| .|.+|+---.||+|..||..+++-...
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence 55 456666555799999999988875433
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=3.6 Score=39.59 Aligned_cols=172 Identities=13% Similarity=0.275 Sum_probs=92.2
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEE--E--eccCCCeeEEEEecCCCe
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ--I--ETIANPKGLCAVSQGVGS 228 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~ 228 (368)
-.|+|++ -+|..+..+. ..+.+..+.|+.+..+++ .+|++++|++- |+.+.. + +.....|..+.+..+|
T Consensus 64 ~~I~If~-~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFN-ISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEe-ccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc--
Confidence 4688888 5677766665 444889999999998888 79999999984 333222 1 1222334444444444
Q ss_pred EEEEeecCCCCeEEE-EecCcceeeeeec---cCcceEEEEECCCCC---EEE-EEeCCCcEEEEEECCCCc-eeEeeEe
Q 017642 229 LVLVCPGLQKGQVRV-EHYASKRTKFIMA---HDSRIACFALTQDGQ---LLA-TSSTKGTLVRIFNTLDGT-LLQEVRR 299 (368)
Q Consensus 229 ~~l~~~g~~dg~i~i-~~~~~~~~~~~~~---~~~~i~~v~~sp~g~---~l~-s~~~dg~~i~iwd~~~~~-~~~~~~~ 299 (368)
+++.. .+|.+.+ ..........+.. ..-+-.|-...+++. .++ ..-..+ ..+.-..... ....+..
T Consensus 140 Vavlt---~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~--~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 140 VAVLT---VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG--LHICQVEESRVQLHALSW 214 (829)
T ss_pred eEEEe---cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh--hcccceecccccccccCC
Confidence 22222 3566665 3333322222221 111212222222221 121 111122 1222222211 1112222
Q ss_pred ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 338 (368)
..+.+..+..||++++|+--..+|.|.+-+++..+.-
T Consensus 215 --~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 215 --PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred --CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 1246888999999999998889999888887765543
No 427
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=4.2 Score=34.65 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=121.2
Q ss_pred EcCCCCEEEEEe-CCeEEEEEecCCCcc-eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc---
Q 017642 93 FNQDHGCFAAGT-DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--- 167 (368)
Q Consensus 93 ~s~~g~~l~~~~-d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~--- 167 (368)
|.-.|++..++. +.++-++|+.+.... +...+. ........++.+++..+.+.-+ +-+.+.|+....
T Consensus 134 v~vsGn~aYVadlddgfLivdvsdpssP~lagrya-~~~~d~~~v~ISGn~AYvA~~d-------~GL~ivDVSnp~sPv 205 (370)
T COG5276 134 VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA-LPGGDTHDVAISGNYAYVAWRD-------GGLTIVDVSNPHSPV 205 (370)
T ss_pred EEecCCEEEEeeccCcEEEEECCCCCCceeeeeec-cCCCCceeEEEecCeEEEEEeC-------CCeEEEEccCCCCCe
Confidence 444688988888 999999999765443 222332 2223335666777776666433 779999987653
Q ss_pred EEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642 168 CIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (368)
Q Consensus 168 ~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~ 244 (368)
.+..+.....+..+..+++..+++ .+..+.+-|..+.+....+. ...+++..-.+.-.++..+++- | ..|...++
T Consensus 206 li~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad-g-a~gl~~id 283 (370)
T COG5276 206 LIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD-G-AKGLPIID 283 (370)
T ss_pred EEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec-c-ccCceeEe
Confidence 334444555899999999988888 77788888887665444442 1223332223444555555542 2 22333332
Q ss_pred ecCc--ceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642 245 HYAS--KRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 245 ~~~~--~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 321 (368)
..+. ..+. .+......-..+.. -+.++..+..+ . ..+-|...-+......+ ....+.+.+.+-+.+.+.+.
T Consensus 284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~ 357 (370)
T COG5276 284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYST 357 (370)
T ss_pred ccCCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEe
Confidence 2211 1111 11111112223332 23444444444 2 44555443332222222 12234444445556677888
Q ss_pred eCCCeEEEEEcc
Q 017642 322 SDKGTVHVFNLK 333 (368)
Q Consensus 322 s~dg~i~iwd~~ 333 (368)
..++.+.||+..
T Consensus 358 d~~~gl~i~~~~ 369 (370)
T COG5276 358 DYNGGLSIIEYL 369 (370)
T ss_pred ecCCCEEEEEec
Confidence 888999999863
No 428
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=93.52 E-value=2.3 Score=37.99 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=89.7
Q ss_pred CcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642 156 NKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (368)
+.|.++| +....+..+. ....|.++.|..|-.+++ .-.-+.+.|+.+.+..+.+....-+-.+--++|-|+..
T Consensus 406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~ 484 (603)
T COG4880 406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR 484 (603)
T ss_pred ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence 3566666 4555666655 577899999999888887 34568888987655444332222222334568888887
Q ss_pred EEEeecCCCCeEEE--EecCc----ceeeee--eccCc----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642 230 VLVCPGLQKGQVRV--EHYAS----KRTKFI--MAHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (368)
Q Consensus 230 ~l~~~g~~dg~i~i--~~~~~----~~~~~~--~~~~~----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (368)
++.. |-.+|.+++ ++... +.+..+ ...-. .-.+..|.|...+++.-...+. .|+-++.|..+..-
T Consensus 485 ~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g--yif~iedg~kl~k~ 561 (603)
T COG4880 485 LLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG--YIFFIEDGSKLRKR 561 (603)
T ss_pred EEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc--EEEEEecCceeeeh
Confidence 8776 778899888 44332 111111 10000 1123445555554333333333 35656666433222
Q ss_pred EeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 298 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
.. |+..+...-|-.| +|...+.. .+.++|-
T Consensus 562 ~e--~k~na~RA~fi~d--ylY~vg~~-ev~~lde 591 (603)
T COG4880 562 AE--RKLNADRAFFIKD--YLYLVGGN-EVWKLDE 591 (603)
T ss_pred hh--hcccceeeEEecc--eEEEeccc-eeEEecc
Confidence 12 4555555556555 44433322 3444443
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.38 E-value=0.63 Score=38.38 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=45.3
Q ss_pred EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE---------------ecCCceeEEEEeeCccEEE--eCC
Q 017642 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL---------------SFRSEVRSVKLRRDRIIVV--LEQ 194 (368)
Q Consensus 132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~--~d~ 194 (368)
+..+....+.+.+++.. |.+++||+.+++.+..- .....|..+.++.+|.-++ .+|
T Consensus 15 ~~~l~~~~~~Ll~iT~~-------G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSS-------GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred eEEEEeCCCEEEEEeCC-------CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 34455556665555544 99999999998765432 1335678888888887766 688
Q ss_pred cEEEEEcCC
Q 017642 195 KIFVYNFAD 203 (368)
Q Consensus 195 ~i~vwd~~~ 203 (368)
..+.|+..-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 888888643
No 430
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.34 E-value=8 Score=37.24 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=79.9
Q ss_pred EEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE--EEEec-cCCCeeEEEEec-----CCCeEEEEeecCCCC
Q 017642 171 ELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL--HQIET-IANPKGLCAVSQ-----GVGSLVLVCPGLQKG 239 (368)
Q Consensus 171 ~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~--~~~~~-~~~~v~~~~~~~-----~~~~~~l~~~g~~dg 239 (368)
+++..+.|.++.+..++..++ .+|.|.+||...+... ..+.. +...+.--.|-. +++.++++.+.-.+.
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 445788999999998777665 6999999999333221 12211 111111001211 233333333231222
Q ss_pred --eEEEEec--Ccceeeeee---ccCcceE--EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--Cc--ccE
Q 017642 240 --QVRVEHY--ASKRTKFIM---AHDSRIA--CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DR--AEI 306 (368)
Q Consensus 240 --~i~i~~~--~~~~~~~~~---~~~~~i~--~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~--~~v 306 (368)
..++... ....+..+. .+..... .+++. +|++..- .++. |.+|++...+..+++.... .. ..+
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~-i~~ysip~f~~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKT-ISSYSIPNFQIQKTISLPSIIDKESDDL 280 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCE-EEEEEcCCceEEEEEEechhhccccccc
Confidence 3334444 233333332 1111222 23333 5653333 5667 9999999888777665420 01 123
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
.++.--...+.|++ .+++|++.|+.-..
T Consensus 281 vSl~~~s~nRvLLs--~~nkIyLld~~~~s 308 (670)
T PF10395_consen 281 VSLKPPSPNRVLLS--VNNKIYLLDLKFES 308 (670)
T ss_pred eEeecCCCCeEEEE--cCCEEEEEeehhhh
Confidence 34332122344443 46789999986543
No 431
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.28 E-value=5.1 Score=34.81 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=75.5
Q ss_pred cCCceeEEEEeeCccEEE--eCCcE-EEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe--cCc
Q 017642 174 FRSEVRSVKLRRDRIIVV--LEQKI-FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH--YAS 248 (368)
Q Consensus 174 ~~~~v~~~~~~~~~~~l~--~d~~i-~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~~ 248 (368)
..+.+..+..++||++++ ..|.+ .-||--...-...-......+..+.|.+++.- .++. ..|.|+.-+ ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~l-w~~~---~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNL-WMLA---RGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-E-EEEE---TTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCE-EEEe---CCcEEEEccCCCCc
Confidence 557788888999999988 45554 46664211111112234568899999999753 4433 578888833 111
Q ss_pred cee----eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCCEEEEEeC
Q 017642 249 KRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSD 323 (368)
Q Consensus 249 ~~~----~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~ 323 (368)
..- ..+....-.+..++|.+++...++|+. |. .+.....|+.-+..+.. .-.+.++.|.|..+.+-++. +.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~--l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT--LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQ 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc--EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CC
Confidence 111 112223335889999998877776554 44 45555667766554431 12456889999876665655 47
Q ss_pred CCeEEEE
Q 017642 324 KGTVHVF 330 (368)
Q Consensus 324 dg~i~iw 330 (368)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877655
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=5.2 Score=34.13 Aligned_cols=193 Identities=8% Similarity=0.072 Sum_probs=107.2
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE-eCCcEEEEEcCC
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD 203 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~ 203 (368)
.+..+.++.++.+..+++-.+ .-+++.|+.+...-..+. ..+--.++..+.+-.+++ .|..+.+.|+.+
T Consensus 85 ~~~l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCC
Confidence 344556677777777777654 569999998765433333 335566666666666666 477788888865
Q ss_pred Ce---EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeecc---CcceEEEEECCCCCEEEEEe
Q 017642 204 LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSS 277 (368)
Q Consensus 204 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~---~~~i~~v~~sp~g~~l~s~~ 277 (368)
.+ ..-........-..+++ .|++-++++ .|+-+.+-+.....--.+.+| ...+.++..+++..+++...
T Consensus 158 pssP~lagrya~~~~d~~~v~I--SGn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAI--SGNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred CCCceeeeeeccCCCCceeEEE--ecCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 43 22233333332233444 355545554 566666644333222223322 23678888887765665544
Q ss_pred CCCcEEEEEECCCCceeEeeEeccCcccEEEE-EEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l-~~sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
+ | +.+-|..+.+....+-.. ....+.++ .+.-.+++...+..+.-+.+-|++++.
T Consensus 233 e-g--vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 233 E-G--VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred c-c--eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 3 3 778887665544333221 22223232 233335566666556667777776554
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.00 E-value=4.2 Score=33.04 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=38.3
Q ss_pred EEEEeC-CeEEEEecCCCCCCCCCcEEEEeCC--CCcEEEEEecCCceeEEEEeeCccEEE
Q 017642 134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELSFRSEVRSVKLRRDRIIVV 191 (368)
Q Consensus 134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 191 (368)
.+.-.+ +.+++++++ +.|.+|++. ..+....|..-+.|..+.++..|.+++
T Consensus 22 ~~c~~g~d~Lfva~~g-------~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlv 75 (215)
T PF14761_consen 22 AVCCGGPDALFVAASG-------CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLV 75 (215)
T ss_pred eeeccCCceEEEEcCC-------CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEE
Confidence 333445 556665544 789999988 345667777778999999999999998
No 434
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.95 E-value=8.1 Score=36.22 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=62.1
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcc---eEEEEECCCC
Q 017642 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR---IACFALTQDG 270 (368)
Q Consensus 194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~---i~~v~~sp~g 270 (368)
+.+.++|. +|..+..+.........+...++|.. ++.. ...++..+..++.+......... =..+..-|+|
T Consensus 128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~l--l~~~---~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNL--LIGS---GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-E--EEEE---BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred ceEEEECC-CccEEEEEccCccccceeeEcCCCCE--EEec---CCceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence 45666664 46665555433332222556677763 3322 25666666666655543322211 2346677889
Q ss_pred CEEEEEeC-------------CCcEEEEEECCCCceeEeeEecc-------------------------CcccEEEEEEe
Q 017642 271 QLLATSST-------------KGTLVRIFNTLDGTLLQEVRRGA-------------------------DRAEIYSLAFS 312 (368)
Q Consensus 271 ~~l~s~~~-------------dg~~i~iwd~~~~~~~~~~~~~~-------------------------~~~~v~~l~~s 312 (368)
++|+.+.. ... |..+| .+|+.+..+.... +-..++++.+.
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 88887771 112 44555 5555554433211 11258899999
Q ss_pred c-CCCEEEEEeCCCeEEEEEccCCC
Q 017642 313 S-NAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 313 p-~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
+ ++.+|+++-.-..|...|.++++
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred CCCCeEEEEcCcceEEEEEECCCCc
Confidence 8 56666666555577777755554
No 435
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.80 E-value=9.5 Score=36.64 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=89.1
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE--eC------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecC
Q 017642 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LE------QKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~--~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (368)
..+..+|..+++....-. ......+++...+..+++ .| ..+..||.++.+=.. +..-...-.......-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE
Confidence 578899988875443333 444455666666655555 34 367888887665222 1111111122233333
Q ss_pred CCeEEEEeecCCCCeEEE-----EecCcceeeeeecc---CcceEEEEECCCCCEEEEEeCCCcE-----EEEEECCCCc
Q 017642 226 VGSLVLVCPGLQKGQVRV-----EHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTL-----VRIFNTLDGT 292 (368)
Q Consensus 226 ~~~~~l~~~g~~dg~i~i-----~~~~~~~~~~~~~~---~~~i~~v~~sp~g~~l~s~~~dg~~-----i~iwd~~~~~ 292 (368)
+..+ .+. |+.||.-.+ |+.....-...... ......+.+ +|++.++|+.++.. +..||..+++
T Consensus 380 ~g~i-Yav-GG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 380 DGKL-YAV-GGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCEE-EEE-eccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 3333 343 556765443 44333222222111 122222333 78888888866531 6788877655
Q ss_pred eeE--eeEeccCcccEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCCCC
Q 017642 293 LLQ--EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNSGSA 339 (368)
Q Consensus 293 ~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~ 339 (368)
-.. .+.. ... -..++. -++.+.+.||.|+ +|..||..+.+-..
T Consensus 456 W~~~~~M~~--~R~-~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 456 WTLIAPMNT--RRS-GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred eeecCCccc--ccc-cceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 332 2221 111 112332 3577778887765 37778877765443
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=7.4 Score=35.33 Aligned_cols=139 Identities=10% Similarity=0.001 Sum_probs=94.1
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642 89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (368)
Q Consensus 89 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~ 168 (368)
+.+-|....+.|.+...+++.=|.+..........+.......+.++.|+++..+++.--.+ ++|.+++....+.
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDNS 100 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCch
Confidence 34455555666666667778778776555433344433566689999999999999988777 9999999754433
Q ss_pred EEEE----e-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642 169 IGEL----S-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLV 232 (368)
Q Consensus 169 ~~~~----~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 232 (368)
...+ + ....|.+..|+.+..+.+ .+..+.+|.+... +.++.++.+.-.|.-..|+++.+-.+++
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 3332 2 344588999988755444 7888888877443 3455556677778888888887754444
No 437
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.57 E-value=10 Score=36.43 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=109.8
Q ss_pred CCCCEEEEEe-CC------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642 95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (368)
Q Consensus 95 ~~g~~l~~~~-d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~ 167 (368)
..+.+++.|+ .+ .+..||..+........+ .......+++...+.+++++|.+.....-..+..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3456667777 43 277888766544333333 22233445555566555555443123333678899988776
Q ss_pred EEEEEe--cCCceeEEEEeeCccEEE---eC-----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642 168 CIGELS--FRSEVRSVKLRRDRIIVV---LE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (368)
Q Consensus 168 ~~~~~~--~~~~v~~~~~~~~~~~l~---~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~ 237 (368)
....-. ....-.+++.. +|.+.+ .| ..|..||.++.+-...- .............-+..+++ + |+.
T Consensus 361 W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi-~-GG~ 436 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYI-I-GGG 436 (571)
T ss_pred eeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEE-E-cCc
Confidence 443222 11111222222 344333 23 25778887654321111 11112222333333334343 3 444
Q ss_pred CCeE------EEEecCcce---eeeeeccCcceEEEEECCCCCEEEEEeCCCc----EEEEEECCCCceeEeeEeccCcc
Q 017642 238 KGQV------RVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRA 304 (368)
Q Consensus 238 dg~i------~i~~~~~~~---~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~ 304 (368)
++.- ..++..... +..+..-........+ ++.+++.|+.|+. .|..||..+.+-...-.......
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 4433 224333322 1122211112222222 6778888887761 16778887765443211110111
Q ss_pred cEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCCCC
Q 017642 305 EIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNSGSA 339 (368)
Q Consensus 305 ~v~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~ 339 (368)
.+..+. -+++..++|+.|| +|..||..+.+-..
T Consensus 515 ~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 515 AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred cccEEE--ECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 222222 3566777888776 57778776665443
No 438
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=92.36 E-value=11 Score=36.15 Aligned_cols=240 Identities=14% Similarity=0.066 Sum_probs=114.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCe------EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642 87 TLLHISFNQDHGCFAAGTDHG------FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~d~~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v 160 (368)
.+-.++.+||+++||.+-|.. +++.|+.+++.... .+ .. ....++|.+++..+.-...|......+|..
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d-~i--~~--~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD-EI--TN--TSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch-hh--cc--cccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 456678899999998876321 88888887665422 11 11 233445555433333222221111223333
Q ss_pred EeCCC--CcEEEEEec--CCceeEEEEeeCccEEE------eCCcEEEEEcCCCeEEE-EEeccCCCeeEEEEecCCCeE
Q 017642 161 WDDHQ--SRCIGELSF--RSEVRSVKLRRDRIIVV------LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSL 229 (368)
Q Consensus 161 wd~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~------~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 229 (368)
-.+.+ ..-...+.. ..-...+.-+.+..+++ ....+++.+........ .+......+. ......++.+
T Consensus 205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e-Y~~eh~~d~f 283 (682)
T COG1770 205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVE-YSVEHGGDRF 283 (682)
T ss_pred EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcE-EeeeecCcEE
Confidence 33333 222223332 22333444455566665 23578888876543321 2211111111 2223335555
Q ss_pred EEEeecCCCC-eEEEEecCc----ceeeeeeccCcceEEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEecc
Q 017642 230 VLVCPGLQKG-QVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGA 301 (368)
Q Consensus 230 ~l~~~g~~dg-~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~ 301 (368)
++.+ . .+| ..+|..... ..-+.+..|...+.--.|+--..+|+....++ . |++++..+++... +.-.
T Consensus 284 ~i~s-N-~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~-v~v~~~~~~~~~~-i~f~- 358 (682)
T COG1770 284 YILS-N-ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPR-VVVRDRKTGEERG-IAFD- 358 (682)
T ss_pred EEEe-c-CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCce-EEEEecCCCceee-EEec-
Confidence 5543 2 333 444422221 22334556776666556665666666665543 4 8888887766543 3321
Q ss_pred CcccEEEEEEecC--CCEE-E-EEe--CCCeEEEEEccCCCC
Q 017642 302 DRAEIYSLAFSSN--AQWL-A-VSS--DKGTVHVFNLKVNSG 337 (368)
Q Consensus 302 ~~~~v~~l~~sp~--~~~l-~-s~s--~dg~i~iwd~~~~~~ 337 (368)
.......+..+++ ...| + ..| .-.++.=+|+.+++.
T Consensus 359 ~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er 400 (682)
T COG1770 359 DEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGER 400 (682)
T ss_pred chhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcE
Confidence 2233344444432 2222 2 222 345677777777654
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.36 E-value=6.8 Score=33.88 Aligned_cols=164 Identities=13% Similarity=0.056 Sum_probs=88.9
Q ss_pred CcEEEEeCCCCcEEEEEec-------CCceeEEEEeeCc-----cEEE----eCCcEEEEEcCCCeEEEEEeccCC----
Q 017642 156 NKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRDR-----IIVV----LEQKIFVYNFADLKLLHQIETIAN---- 215 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-----~~l~----~d~~i~vwd~~~~~~~~~~~~~~~---- 215 (368)
-+|.+||+.+++.++++.. .+.+..+.+.... .++. ..+.|.|+|+.+++..+.+..+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 4799999999999888862 3456777777632 2222 346899999999876655532211
Q ss_pred ---------------CeeEEEEec---CCCeEEEEeecCCCCeEEE---EecCc---------ceeeeeeccCcceEEEE
Q 017642 216 ---------------PKGLCAVSQ---GVGSLVLVCPGLQKGQVRV---EHYAS---------KRTKFIMAHDSRIACFA 265 (368)
Q Consensus 216 ---------------~v~~~~~~~---~~~~~~l~~~g~~dg~i~i---~~~~~---------~~~~~~~~~~~~i~~v~ 265 (368)
.+..++.++ +++.+++.. -+.....+| ...+. ..++.+.........++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~-lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP-LSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE-TT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEe-CCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 123344433 443433322 111112222 11111 01112211123556788
Q ss_pred ECCCCCEEEEEeCCCcEEEEEECCCC---ceeEeeEeccC-cccEEEEEEec--CCCEEEEE
Q 017642 266 LTQDGQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGAD-RAEIYSLAFSS--NAQWLAVS 321 (368)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~~~---~~~~~~~~~~~-~~~v~~l~~sp--~~~~l~s~ 321 (368)
++++|.++++--..+. |..|+..+. +....+..... -..+.++.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8999988888888888 999998751 12222322212 34778999988 77765544
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.27 E-value=8.3 Score=34.72 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=74.1
Q ss_pred eEEEEEEeCCeEEEEecCCCCC------CCCC-cEEEEeCCC--Cc--EEEEEe-cCCceeEEEEeeCccEEEeCCcEEE
Q 017642 131 GVVEMLFRCNILALVGGGPDPQ------YPLN-KVMIWDDHQ--SR--CIGELS-FRSEVRSVKLRRDRIIVVLEQKIFV 198 (368)
Q Consensus 131 ~~~~~~~~~~~~~~~s~~~d~~------~~~~-~i~vwd~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~~d~~i~v 198 (368)
....+++++++.++++...+-. -..+ .|.+++-.+ |+ ....+. .-.....+++.+++.+++....|..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~ 94 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF 94 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence 3456777777766665321000 0012 677776442 33 223333 3345688999999944444455554
Q ss_pred E-EcCC-C----eEEEE---Eecc----CCCeeEEEEecCCCeEEEEeecCCC------------------CeEEEEecC
Q 017642 199 Y-NFAD-L----KLLHQ---IETI----ANPKGLCAVSQGVGSLVLVCPGLQK------------------GQVRVEHYA 247 (368)
Q Consensus 199 w-d~~~-~----~~~~~---~~~~----~~~v~~~~~~~~~~~~~l~~~g~~d------------------g~i~i~~~~ 247 (368)
| |... + +.... +... ......+.|.+||. +++.. |+.. |.|.-.+.+
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH-GNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec-ccCCCceeccCCCccCcccccCceEEEEecC
Confidence 4 4321 1 21112 2211 22355788999985 45443 4211 222223333
Q ss_pred cceeeeeeccCcceEEEEECCCCCEEEEEeCCC
Q 017642 248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (368)
Q Consensus 248 ~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg 280 (368)
+.....+...-.....++|+++|+++++-..++
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 333333322223356899999999877655443
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.02 E-value=0.022 Score=51.01 Aligned_cols=136 Identities=18% Similarity=0.246 Sum_probs=86.4
Q ss_pred CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCC
Q 017642 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD 203 (368)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~ 203 (368)
+-+..+...|.+++.-++.++.+ ..+..|| +.++...+...++....++|..++..++ ..+.+++||+.+
T Consensus 33 alv~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred hccccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 34445555665544434444433 6788888 6677777777788888999999887665 578999999965
Q ss_pred CeEEEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEE
Q 017642 204 LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLL 273 (368)
Q Consensus 204 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l 273 (368)
... +.++ +....-.-..|++....+.+ |...|.+.|+.... +.+.....|...++++++.+.+..+
T Consensus 107 eyt-qqLE~gg~~s~sll~wsKg~~el~i---g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 107 EYT-QQLESGGTSSKSLLAWSKGTPELVI---GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred hhH-HHHhccCcchHHHHhhccCCccccc---cccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 432 2221 12222223567777665333 55778888855444 3333444488899999999876533
No 442
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.94 E-value=11 Score=35.36 Aligned_cols=152 Identities=12% Similarity=0.076 Sum_probs=74.3
Q ss_pred CCeEEEEec---CCCCCCCCCcEEEEeCCCCcEEEEEec-CCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEecc
Q 017642 139 CNILALVGG---GPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI 213 (368)
Q Consensus 139 ~~~~~~~s~---~~d~~~~~~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~ 213 (368)
.+++.++.. ... ....++| ..|..+..+.. ......+...++|.+++ ....++.+|+ .|+.+......
T Consensus 113 ~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~-~G~v~~~~~l~ 185 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDL-LGKVIWEYDLP 185 (477)
T ss_dssp TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-T-T--EEEEEE--
T ss_pred CCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcC-CCCEEEeeecC
Confidence 456666666 222 5677888 66777666652 22222267788999888 6788888887 46666655433
Q ss_pred CCC---eeEEEEecCCCeEEEEee------c-----CCCCeEEEEecCcceeeeee--cc--------------------
Q 017642 214 ANP---KGLCAVSQGVGSLVLVCP------G-----LQKGQVRVEHYASKRTKFIM--AH-------------------- 257 (368)
Q Consensus 214 ~~~---v~~~~~~~~~~~~~l~~~------g-----~~dg~i~i~~~~~~~~~~~~--~~-------------------- 257 (368)
... -..+..-++|+.++++.. + -.|..+.|+ .+++.+..+. .|
T Consensus 186 ~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~ 264 (477)
T PF05935_consen 186 GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGS 264 (477)
T ss_dssp TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-S
T ss_pred CcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccC
Confidence 322 234667788876665541 0 023333333 4443333211 00
Q ss_pred -----CcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642 258 -----DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (368)
Q Consensus 258 -----~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (368)
---++++.+.+ ++.+|+++-.-.. |...|.++++....+-.
T Consensus 265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGP 311 (477)
T ss_dssp STTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-
T ss_pred CCCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCC
Confidence 01378999988 4445555544446 88888888877665543
No 443
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.74 E-value=6.3 Score=35.90 Aligned_cols=38 Identities=5% Similarity=-0.107 Sum_probs=28.2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEEecCCCcc
Q 017642 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREI 119 (368)
Q Consensus 82 ~~h~~~v~~~~~s~~g~~l~~~~d-~~i~iw~~~~~~~~ 119 (368)
......+.+++.+|++++.|+.+. +.|.++|+......
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv 342 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV 342 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence 344567899999999998887663 33999998765443
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.65 E-value=8.1 Score=33.25 Aligned_cols=220 Identities=13% Similarity=0.138 Sum_probs=116.8
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEecC-----CCcceEEEccc----CCceeEEEEEEeCCeEE------------E
Q 017642 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDP-----FREIFRRDFER----GGGIGVVEMLFRCNILA------------L 144 (368)
Q Consensus 87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------------~ 144 (368)
.-+.|+|+|.+.+-++.. -+...+||.+. ....+...+.. ........+.|+...-+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457899999887655555 55599999872 12222333320 01223445555532222 2
Q ss_pred EecCCCCCCCCCcEEEEeCCCCcE-----EEEEe--cCCce-eEEEEeeC--ccEEE----eCCcEEEEEcCCCeEEEEE
Q 017642 145 VGGGPDPQYPLNKVMIWDDHQSRC-----IGELS--FRSEV-RSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQI 210 (368)
Q Consensus 145 ~s~~~d~~~~~~~i~vwd~~~~~~-----~~~~~--~~~~v-~~~~~~~~--~~~l~----~d~~i~vwd~~~~~~~~~~ 210 (368)
+-+.+| |+|.-|...-+.. ...+. ..+.| +.+++... +.+|. ..++|.|||-. .+++..-
T Consensus 104 if~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~ 177 (336)
T TIGR03118 104 LFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP 177 (336)
T ss_pred EEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence 333444 8999998432221 12222 12333 45555532 33333 57899999853 2222110
Q ss_pred eccCCCeeEEEEec-----CCCeEEEEe-----------ecCCCCeEEEEecCcceeeeeec--cCcceEEEEECC----
Q 017642 211 ETIANPKGLCAVSQ-----GVGSLVLVC-----------PGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQ---- 268 (368)
Q Consensus 211 ~~~~~~v~~~~~~~-----~~~~~~l~~-----------~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~v~~sp---- 268 (368)
....++---.-+.| -+..+++.+ .|..-|.|.+++.++..++++.. .-...+.|+..|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhC
Confidence 00001100000111 112222222 13345788888888888887742 233456777765
Q ss_pred --CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC----cccEEEEEEec
Q 017642 269 --DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSS 313 (368)
Q Consensus 269 --~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~sp 313 (368)
.|.+|+---.||+ |..||..+++.+-.+..... -..++.|.|..
T Consensus 258 ~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGT-INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCce-eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 4567776667999 99999999988877765311 12467788865
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.59 E-value=0.18 Score=48.84 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=54.2
Q ss_pred ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcc-------cCCceeEEEEEEeCCeEEEEecCC
Q 017642 79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-------RGGGIGVVEMLFRCNILALVGGGP 149 (368)
Q Consensus 79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~ 149 (368)
.+..+.++.|..+.|-. +...+. . -+.+.||+++-.+..+...+. ......|..+-|-.+...++.+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34556677888888842 222222 2 244788998754332221111 011122222233455566666666
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEE
Q 017642 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIV 190 (368)
Q Consensus 150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 190 (368)
+ ++|++.++++... ..+. |...+..+++-..|...
T Consensus 204 ~-----~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~ 239 (1283)
T KOG1916|consen 204 G-----GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLK 239 (1283)
T ss_pred C-----CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhh
Confidence 5 8888877655433 1222 77777777766655443
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.54 E-value=3 Score=37.75 Aligned_cols=106 Identities=10% Similarity=0.123 Sum_probs=67.7
Q ss_pred cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEccc-CCceeEEEEEEeCCe-EEEEecCCCCCCC
Q 017642 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFER-GGGIGVVEMLFRCNI-LALVGGGPDPQYP 154 (368)
Q Consensus 78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~d~~~~ 154 (368)
.+.-....++|.++.||+|.+.||+-. ++.|.+++....+.......++ .....+..+.|..+. +++++.
T Consensus 59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~------- 131 (657)
T KOG2377|consen 59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD------- 131 (657)
T ss_pred ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec-------
Confidence 334445667999999999999999988 8889999985544332211111 344558888887654 344443
Q ss_pred CCcEEEEeCCCC-cEEEEEe-cCCceeEEEEeeCccEEE
Q 017642 155 LNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVV 191 (368)
Q Consensus 155 ~~~i~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~ 191 (368)
..+.+|-+... ..++..+ +.-.|.-..|.++...+.
T Consensus 132 -~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 132 -QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred -CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 33556654433 2233334 677788888888776655
No 447
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.26 E-value=10 Score=33.63 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=54.0
Q ss_pred ceeEEEEeeCccEEE--eCCcEEEEEcCCCeE---EEEEe----ccCCCeeEEEEecC---CCeEEEEeecC----CCCe
Q 017642 177 EVRSVKLRRDRIIVV--LEQKIFVYNFADLKL---LHQIE----TIANPKGLCAVSQG---VGSLVLVCPGL----QKGQ 240 (368)
Q Consensus 177 ~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~---~~~~~----~~~~~v~~~~~~~~---~~~~~l~~~g~----~dg~ 240 (368)
..+.|+|.|||++++ ..|.|++++ .++.. +..+. ........++++|+ ...++++.+.. ....
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 457899999999888 578999999 45544 22221 12345567899984 45666665411 1122
Q ss_pred EEE--EecCcc--------ee-eeeec---cCcceEEEEECCCCCEEEEEeC
Q 017642 241 VRV--EHYASK--------RT-KFIMA---HDSRIACFALTQDGQLLATSST 278 (368)
Q Consensus 241 i~i--~~~~~~--------~~-~~~~~---~~~~i~~v~~sp~g~~l~s~~~ 278 (368)
.+| +..... .+ ..+.. ....-..|.|.|||.++++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 222 222211 11 11122 2334567999999986555543
No 448
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.01 E-value=1.6 Score=24.68 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=24.4
Q ss_pred CCCCEEEEEeC-CCcEEEEEECCCCceeEeeEec
Q 017642 268 QDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRG 300 (368)
Q Consensus 268 p~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~ 300 (368)
|++++|+++.. ++. |.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence 57776666654 556 999999999888887764
No 449
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.00 E-value=13 Score=34.29 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=25.5
Q ss_pred ccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
..|.++...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999976
No 450
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.80 E-value=10 Score=32.83 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=82.8
Q ss_pred eeEEEEeeCccEEEe---------------CCcEEEEEcCCCeEEEEEecc------CCCeeEEEEecCCC----eEEEE
Q 017642 178 VRSVKLRRDRIIVVL---------------EQKIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVG----SLVLV 232 (368)
Q Consensus 178 v~~~~~~~~~~~l~~---------------d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~~~l~ 232 (368)
|..+...+++++.+. .-+|.+||+++.+.++++.-. ......+.+..... ..+.+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 556666666665551 127889999999988877533 22345566655221 33333
Q ss_pred eecCCCCeEEEEe-cCcceeeeeec-------------------cCcceEEEEECC---CCCEEEEEeCCCcEEEEEECC
Q 017642 233 CPGLQKGQVRVEH-YASKRTKFIMA-------------------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTL 289 (368)
Q Consensus 233 ~~g~~dg~i~i~~-~~~~~~~~~~~-------------------~~~~i~~v~~sp---~g~~l~s~~~dg~~i~iwd~~ 289 (368)
+-.+ .+-|.|++ .+++..+.+.. ....+..++.+| +|+.|+.....+. ++|.+.
T Consensus 83 tD~~-~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~ 159 (287)
T PF03022_consen 83 TDSG-GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVP 159 (287)
T ss_dssp EETT-TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEE
T ss_pred eCCC-cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEE
Confidence 3232 33444433 33322211111 122366777765 7777887777664 566553
Q ss_pred CC--------------ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 290 DG--------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 290 ~~--------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
+. +.+..+ +. .......++++++|.++++--..+.|..|+..++
T Consensus 160 T~~L~~~~~~~~~~~~~~v~~l-G~-k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 160 TSVLRDPSLSDAQALASQVQDL-GD-KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp HHHHCSTT--HHH-HHHT-EEE-EE----SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred HHHhhCccccccccccccceec-cc-cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 21 111122 11 1235567889999998888888999999998763
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.69 E-value=2.9 Score=33.07 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=25.4
Q ss_pred cceEEEEECCCC------CEEEEEeCCCcEEEEEECCC
Q 017642 259 SRIACFALTQDG------QLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 259 ~~i~~v~~sp~g------~~l~s~~~dg~~i~iwd~~~ 290 (368)
..+..++|||-| -+|++.+.++. |.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCC
Confidence 378999999954 28999999999 99998653
No 452
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=2.8 Score=42.22 Aligned_cols=116 Identities=12% Similarity=-0.005 Sum_probs=71.9
Q ss_pred CcEEEEeCCCCcEEE-----EEe-------cCCceeEEEEeeCc---cEEE-eCCcEEEEEcCCCe-EEEEEeccCCCee
Q 017642 156 NKVMIWDDHQSRCIG-----ELS-------FRSEVRSVKLRRDR---IIVV-LEQKIFVYNFADLK-LLHQIETIANPKG 218 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~-----~~~-------~~~~v~~~~~~~~~---~~l~-~d~~i~vwd~~~~~-~~~~~~~~~~~v~ 218 (368)
-.|..||+++-.... -+. ......++.|+|.- ..+. .|+.|++..+.... ....+ ......+
T Consensus 124 ~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~T 202 (1405)
T KOG3630|consen 124 EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQT 202 (1405)
T ss_pred ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cccccee
Confidence 578899987532111 111 23345677788742 2222 68888888774322 22222 2345678
Q ss_pred EEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec----cCcceEEEEECCCCCEEEE
Q 017642 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA----HDSRIACFALTQDGQLLAT 275 (368)
Q Consensus 219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~----~~~~i~~v~~sp~g~~l~s 275 (368)
+++|+|.|+.+++ |...|++.-+.........+.. ....|.+|.|-....+|++
T Consensus 203 av~WSprGKQl~i---G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 203 AVLWSPRGKQLFI---GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eEEeccccceeeE---ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 9999999998554 6678888777777665554432 1367999999876665554
No 453
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.97 E-value=1.7 Score=41.50 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=25.9
Q ss_pred cEEEEEEec----CCCEEEEEeCCCeEEEEEccCCCC
Q 017642 305 EIYSLAFSS----NAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 305 ~v~~l~~sp----~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
....++++. +..+|++.+.|++||+||+.+++.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 455566665 678999999999999999999987
No 454
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=89.53 E-value=19 Score=34.11 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=106.3
Q ss_pred eCCeEEEEecCCC-----CCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE
Q 017642 138 RCNILALVGGGPD-----PQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL 206 (368)
Q Consensus 138 ~~~~~~~~s~~~d-----~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~ 206 (368)
..+.+.+++...+ ..-..+.|.+.| .+.+.+..+. ..+.|.+++|-.+.-+++ .=.-+++.|+.+.+.
T Consensus 281 ~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~ 359 (521)
T PF09826_consen 281 YDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPAN 359 (521)
T ss_pred cCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCC
Confidence 3455666654421 112336788888 7777777776 577899999999999988 234688999977544
Q ss_pred EEEEeccCCCeeEEEEecCCCeEEEEeecCCC-Ce--------EEE--EecCc----ceeeeee-cc-------CcceEE
Q 017642 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQ--------VRV--EHYAS----KRTKFIM-AH-------DSRIAC 263 (368)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d-g~--------i~i--~~~~~----~~~~~~~-~~-------~~~i~~ 263 (368)
.+.+..-.-+-.+--++|-++..+|.. |-.. .. ++| ++.+. +.+.... +. ...-.+
T Consensus 360 P~vlGeLKIPGfS~YLHP~~e~~LlGi-G~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkA 438 (521)
T PF09826_consen 360 PKVLGELKIPGFSDYLHPYDENHLLGI-GKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKA 438 (521)
T ss_pred CceeeEEECccchhceeECCCCeEEEE-cccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceE
Confidence 333321111222334677666666665 4333 22 555 54432 1121111 00 012346
Q ss_pred EEECCCCCEEEEEeC--------CCcEEEEEECCCCc---eeEeeEeccCcc-------cEEEEEEecCCCEEEEEeCCC
Q 017642 264 FALTQDGQLLATSST--------KGTLVRIFNTLDGT---LLQEVRRGADRA-------EIYSLAFSSNAQWLAVSSDKG 325 (368)
Q Consensus 264 v~~sp~g~~l~s~~~--------dg~~i~iwd~~~~~---~~~~~~~~~~~~-------~v~~l~~sp~~~~l~s~s~dg 325 (368)
+.|++..++|+.--. .| +.|+++...+ ....+. |.. .+....+. +..|.+.+ ++
T Consensus 439 fl~~~~~~ll~~Pv~~~~~~~~~~g--~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS-~~ 510 (521)
T PF09826_consen 439 FLFDKEKNLLAFPVSSSYGYFNFQG--AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVS-DN 510 (521)
T ss_pred EEEeCCCCEEEEEEEEccCccccce--EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEE-CC
Confidence 778887776654332 33 7888877222 222222 333 25665555 34677776 45
Q ss_pred eEEEEEccCC
Q 017642 326 TVHVFNLKVN 335 (368)
Q Consensus 326 ~i~iwd~~~~ 335 (368)
.|+++|+++-
T Consensus 511 ~i~~~~l~t~ 520 (521)
T PF09826_consen 511 GIKAYDLNTL 520 (521)
T ss_pred EEEEEehHhc
Confidence 6999999864
No 455
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=10 Score=39.07 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=44.8
Q ss_pred ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 256 ~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
-+..++.+..+......+ .+...+. +-+|+.........+... ...++.++..++++..||.+.+||+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKIL-IGFNRGL-VVIKDRASKYVQSAYLPN-------GQLESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccceeeeecCCCcc-eeeeeee-eeehhcccccchhhcccc-------cccCccCCceEEEEEecCCEEeeecCCC
Confidence 344555665555444433 3344455 667765444433333321 1112888999999999999999999987
Q ss_pred CC
Q 017642 336 SG 337 (368)
Q Consensus 336 ~~ 337 (368)
+.
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 54
No 456
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.27 E-value=27 Score=35.43 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=99.0
Q ss_pred cEEEEeCCCCcEEEEEecCC-----ceeEEEEeeCccE--EE--------------eCCcEEEEEc-CCCeEEEEEeccC
Q 017642 157 KVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRII--VV--------------LEQKIFVYNF-ADLKLLHQIETIA 214 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~--l~--------------~d~~i~vwd~-~~~~~~~~~~~~~ 214 (368)
.|+++|..+++.+..+.+.. .+..+.|+..... ++ .+|.++.|++ +.|+.+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 58999988888887776433 3555666653322 22 2566888887 4555444443222
Q ss_pred CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee---eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC-C
Q 017642 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D 290 (368)
Q Consensus 215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~---~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~-~ 290 (368)
-+-...++.|..+.+ ++. ....+++++...+.+.. ++.-...|..+.+ .+..+++|..... +.++-.+ .
T Consensus 934 ~~~~v~Ai~~f~~~~-Lag---vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~ 1006 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRV-LAG---VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE 1006 (1205)
T ss_pred CCccceEEeccCCEE-EEe---cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC
Confidence 233346777877753 332 35788887776644322 2223456777776 5667777766555 5544333 3
Q ss_pred CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 334 (368)
+..+..+....-...|+++.+- |...+|.+..=|.+.+-.+..
T Consensus 1007 ~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 4445566554334467777665 455677776667777766643
No 457
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.23 E-value=3.5 Score=32.58 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.0
Q ss_pred cEEEEEEecCC------CEEEEEeCCCeEEEEEccC
Q 017642 305 EIYSLAFSSNA------QWLAVSSDKGTVHVFNLKV 334 (368)
Q Consensus 305 ~v~~l~~sp~~------~~l~s~s~dg~i~iwd~~~ 334 (368)
.+.+++|||-| .+|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 3788889999999998764
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=6 Score=36.57 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=51.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEEEC----------CCCceeEeeE---------eccCcccEEEEEEecCC---CE
Q 017642 260 RIACFALTQDGQLLATSSTKGTLVRIFNT----------LDGTLLQEVR---------RGADRAEIYSLAFSSNA---QW 317 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~----------~~~~~~~~~~---------~~~~~~~v~~l~~sp~~---~~ 317 (368)
.|..+..++.|..++-.+.+| |.|..+ ++|+.+...+ .....-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 467788889999888888888 455444 2343322211 11112256788999986 56
Q ss_pred EEEEeCCCeEEEEEccCCCCC
Q 017642 318 LAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 318 l~s~s~dg~i~iwd~~~~~~~ 338 (368)
|..-+.|..|||||+......
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 777788999999999887653
No 459
>PHA03098 kelch-like protein; Provisional
Probab=87.36 E-value=27 Score=33.25 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=35.3
Q ss_pred CCCEEEEEeCC--------CcEEEEEECCCCceeEe--eEeccCcccEEEEEEecCCCEEEEEeCC-----CeEEEEEcc
Q 017642 269 DGQLLATSSTK--------GTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLK 333 (368)
Q Consensus 269 ~g~~l~s~~~d--------g~~i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~ 333 (368)
++++++.|+.+ .. +.+||..+++-... +.. .......+. -++++++.|+.+ +.|.+||..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNI-VESYNPVTNKWTELSSLNF--PRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred CCEEEEECCccCCCCCcccce-EEEecCCCCceeeCCCCCc--ccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCC
Confidence 56677777643 23 78888876553321 111 111111222 267777777654 468888887
Q ss_pred CCCC
Q 017642 334 VNSG 337 (368)
Q Consensus 334 ~~~~ 337 (368)
+.+=
T Consensus 512 ~~~W 515 (534)
T PHA03098 512 TNTW 515 (534)
T ss_pred CCEE
Confidence 7643
No 460
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.01 E-value=2.6 Score=23.53 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=19.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--C--CeEEEE
Q 017642 84 PPPTLLHISFNQDHGCFAAGT--D--HGFRIY 111 (368)
Q Consensus 84 h~~~v~~~~~s~~g~~l~~~~--d--~~i~iw 111 (368)
....-....|+|||+.|+..+ + +...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344677889999999998777 3 335555
No 461
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.89 E-value=36 Score=34.07 Aligned_cols=58 Identities=7% Similarity=0.086 Sum_probs=38.9
Q ss_pred EEEEECCCCceeEeeEeccCcc-------cEEEEEEec-CCC---EEEEEeCCCeEEEEEccCCCCCCC
Q 017642 283 VRIFNTLDGTLLQEVRRGADRA-------EIYSLAFSS-NAQ---WLAVSSDKGTVHVFNLKVNSGSAR 340 (368)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~~-------~v~~l~~sp-~~~---~l~s~s~dg~i~iwd~~~~~~~~~ 340 (368)
|.-.|.++|+..-.++..+|+. ...=+.+.. +|+ .++.++.+|.++++|-++++..-.
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 6777888999887776533321 111122322 563 788899999999999999876543
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.84 E-value=20 Score=34.95 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=26.3
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC
Q 017642 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR 117 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~ 117 (368)
..-++++.-+|.|+.++.+. |+.|++|+..+..
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 44567788889999999999 8889999986544
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.45 E-value=35 Score=33.51 Aligned_cols=144 Identities=11% Similarity=0.093 Sum_probs=83.0
Q ss_pred CCEEEEEeCCeEEEEEecCCCcceE----EEcc-----------------cCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642 97 HGCFAAGTDHGFRIYNCDPFREIFR----RDFE-----------------RGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (368)
Q Consensus 97 g~~l~~~~d~~i~iw~~~~~~~~~~----~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~ 155 (368)
+.+|.++..+.|.||+.+....... ..+. ..|.+..+.+..-.+..+|+.+.+|
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd----- 123 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD----- 123 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecC-----
Confidence 7788888899999999865433210 0000 1233444444444556666666666
Q ss_pred CcEEEEeCCC-------C-------------cEEEEEecCCceeEEEEe--eCccEEE-e--CCcEEEEEcCC--CeEEE
Q 017642 156 NKVMIWDDHQ-------S-------------RCIGELSFRSEVRSVKLR--RDRIIVV-L--EQKIFVYNFAD--LKLLH 208 (368)
Q Consensus 156 ~~i~vwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~-~--d~~i~vwd~~~--~~~~~ 208 (368)
|.|.+|.+++ . ++...+.....+++++++ ...+++| + ...|.||-... .+...
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence 9999996521 1 122333467789999998 7777777 3 33555554432 22111
Q ss_pred E-EeccCCCeeEEEEecCC---Ce-EEEEeecCCCCeEEEEec
Q 017642 209 Q-IETIANPKGLCAVSQGV---GS-LVLVCPGLQKGQVRVEHY 246 (368)
Q Consensus 209 ~-~~~~~~~v~~~~~~~~~---~~-~~l~~~g~~dg~i~i~~~ 246 (368)
. -..+...|.+++|-++. .. ..+++ .+-.|.+.++..
T Consensus 204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a-~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVA-TDISGEVWTFKI 245 (717)
T ss_pred ccccccccCCCeeEeecCCCCCccceEEEE-EeccCcEEEEEE
Confidence 0 11255678888887765 11 24444 567787777444
No 464
>PRK13684 Ycf48-like protein; Provisional
Probab=86.37 E-value=23 Score=31.41 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=82.7
Q ss_pred CCceeEEEEeeCccEEE--eCCcEEEEEcCCC-eEEEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE-ecCcc
Q 017642 175 RSEVRSVKLRRDRIIVV--LEQKIFVYNFADL-KLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE-HYASK 249 (368)
Q Consensus 175 ~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~-~~~~~ 249 (368)
...+.++.+.+++.+++ ..|.+.. ....+ +.-..+ ......+..+.+.+++.. +++ | ..|.+++- ...+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~-~~v--g-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL-WML--A-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCE-EEE--e-cCCEEEEccCCCCC
Confidence 45788999999988777 3454443 22222 222222 223456777888888764 322 3 45777652 22222
Q ss_pred eeeeeec----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe-ccCcccEEEEEEecCCCEEEEEeCC
Q 017642 250 RTKFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDK 324 (368)
Q Consensus 250 ~~~~~~~----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d 324 (368)
.-..... ....+..+.+.+++..++ ++.+|. | +.....++....... ..-....+.+.|..+++.+++ +..
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~-v-~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 322 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGT-L-LVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR 322 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEE-EcCCCe-E-EEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence 2111111 123578899999887555 455665 3 455555555444432 111235788888877776654 567
Q ss_pred CeEEEEE
Q 017642 325 GTVHVFN 331 (368)
Q Consensus 325 g~i~iwd 331 (368)
|.|.-|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 8887665
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.03 E-value=4.2 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=19.2
Q ss_pred ccCcceEEEEECCCCCEEEEEeC-C--CcEEEEE
Q 017642 256 AHDSRIACFALTQDGQLLATSST-K--GTLVRIF 286 (368)
Q Consensus 256 ~~~~~i~~v~~sp~g~~l~s~~~-d--g~~i~iw 286 (368)
..........|+|||++|+-++. + |. -.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence 34456778899999997765554 4 55 5555
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.83 E-value=4.2 Score=36.82 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=88.4
Q ss_pred cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE-EEE-eccCC----Cee-EEEEecCCCeEEEEeecCCCCeEEEE
Q 017642 174 FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQI-ETIAN----PKG-LCAVSQGVGSLVLVCPGLQKGQVRVE 244 (368)
Q Consensus 174 ~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~~~l~~~g~~dg~i~i~ 244 (368)
....|..+-..|||+.+. ....+.++++.+.... +.+ ....+ .|+ .+.+-..|.. +++ ++.||.|.-|
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S-LLv--~~~dG~vsQW 295 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS-LLV--VHEDGLVSQW 295 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee-EEE--EcCCCceeee
Confidence 556788889999999887 5678889988654321 111 11111 111 1111122322 333 4578888774
Q ss_pred e-c-Ccc-----eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCE
Q 017642 245 H-Y-ASK-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317 (368)
Q Consensus 245 ~-~-~~~-----~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 317 (368)
- . +.. .++.++-...++..+.=..+.+-+++-+.+|+ +.++.....+.+ -+.. --..+.-+++||.+.+
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceeeeCcccch
Confidence 2 2 111 11111112233433332233456778888888 888865444433 2222 1235677899999999
Q ss_pred EEEEeCCCeEEEEEccCCCCC
Q 017642 318 LAVSSDKGTVHVFNLKVNSGS 338 (368)
Q Consensus 318 l~s~s~dg~i~iwd~~~~~~~ 338 (368)
|++- +.|.|+++.+++..++
T Consensus 372 Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 372 LLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred heee-cCCceEEEEecCCCCC
Confidence 9875 4677999999876554
No 467
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=85.46 E-value=9.7 Score=26.21 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=28.4
Q ss_pred EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642 276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 321 (368)
+..+|. +.-||..+++....+.+ -..-+.|++++|+.+|+.+
T Consensus 33 ~~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEE
Confidence 344677 89999988876544443 2357899999999987766
No 468
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.16 E-value=34 Score=33.68 Aligned_cols=93 Identities=11% Similarity=0.020 Sum_probs=48.4
Q ss_pred eEEEEecCCCeEEEEeec--CCCCe--EEEEecCcceeeee---eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642 218 GLCAVSQGVGSLVLVCPG--LQKGQ--VRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 218 ~~~~~~~~~~~~~l~~~g--~~dg~--i~i~~~~~~~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (368)
..+.|-|.|.. +++-+ +.+.. |.+...++-..-.+ .+....+..++|+-....++.+-. .. |++|-..+
T Consensus 250 ~~LSWkpqgS~--~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~-n~-~~lwttkN 325 (1243)
T COG5290 250 HQLSWKPQGSK--YATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEG-NL-LKLWTTKN 325 (1243)
T ss_pred hccccccCCce--eeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhc-ce-EEEEEccc
Confidence 34788898875 34333 11222 33344443221111 122334566777666655555443 34 99998665
Q ss_pred CceeEeeEeccCcccEEEEEEecCCC
Q 017642 291 GTLLQEVRRGADRAEIYSLAFSSNAQ 316 (368)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~sp~~~ 316 (368)
-.-...... .-..+.-+.|+|...
T Consensus 326 yhWYLK~e~--~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 326 YHWYLKVER--QIPGISYVKWHPEEK 349 (1243)
T ss_pred eEEEEEEee--cCCCcceeeeccccC
Confidence 443322222 233567789998654
No 469
>PHA03098 kelch-like protein; Provisional
Probab=83.51 E-value=42 Score=31.99 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=48.9
Q ss_pred CCCCEEEEEe-CC------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642 95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (368)
Q Consensus 95 ~~g~~l~~~~-d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~ 167 (368)
.++.+++.|+ ++ .+..||..+.+......+. ... ....+....+.+++++|..+ ...-..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~R-~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI-YPR-KNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC-ccc-ccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCc
Confidence 3556666666 32 2556665544332111121 111 12233334566666665432 1112467889987765
Q ss_pred EEEE--EecCCceeEEEEeeCccEEEeC---------CcEEEEEcCCCe
Q 017642 168 CIGE--LSFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLK 205 (368)
Q Consensus 168 ~~~~--~~~~~~v~~~~~~~~~~~l~~d---------~~i~vwd~~~~~ 205 (368)
.... +.....-.+++. -++++.+.. ..+..||..+.+
T Consensus 370 W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 4332 112111122222 244444411 357888987654
No 470
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.21 E-value=28 Score=29.66 Aligned_cols=191 Identities=10% Similarity=0.017 Sum_probs=107.4
Q ss_pred EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE-ecCCceeEEEEeeCccEEEeCC--cEEEEEcCCCeEEEE
Q 017642 133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLHQ 209 (368)
Q Consensus 133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~d~--~i~vwd~~~~~~~~~ 209 (368)
..++..+++.+-.++... +.|--.|..+|+....- .....-..|..-|||...+.|. -|.-.|-++.+.. +
T Consensus 65 ~dvapapdG~VWft~qg~-----gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt-~ 138 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT-----GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT-R 138 (353)
T ss_pred cccccCCCCceEEecCcc-----ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceE-E
Confidence 345566677555555444 77888888888765432 3566677888899987777443 4665665555432 2
Q ss_pred E----eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642 210 I----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVR 284 (368)
Q Consensus 210 ~----~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~ 284 (368)
+ +..........|.+.|.-.+ +|...-.=+++ .....+..+.. ....-+.|+..|||...++.-.+.. |-
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWF---t~q~G~yGrLd-Pa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagna-ia 213 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWF---TGQIGAYGRLD-PARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNA-IA 213 (353)
T ss_pred eecccccCCCcccceeeCCCccEEE---eeccccceecC-cccCceeeeccCCCCCCcceEECCCCcEEEEeccccc-eE
Confidence 2 22233455677888886333 23211111222 22233344433 3345678889999997776555666 77
Q ss_pred EEECCCCceeEeeEeccC-cccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642 285 IFNTLDGTLLQEVRRGAD-RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (368)
Q Consensus 285 iwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 335 (368)
..|..++..- .+..... ...-..+--+|.|+.-++-...+.++.||-.+.
T Consensus 214 ridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 214 RIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 7777666322 2221111 223444555677777777666666776665544
No 471
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.92 E-value=27 Score=29.31 Aligned_cols=137 Identities=9% Similarity=0.050 Sum_probs=73.2
Q ss_pred cEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEEe------CCcEEEEEcCC--CeEEE-EE---eccCCCeeEEEE
Q 017642 157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL------EQKIFVYNFAD--LKLLH-QI---ETIANPKGLCAV 222 (368)
Q Consensus 157 ~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~------d~~i~vwd~~~--~~~~~-~~---~~~~~~v~~~~~ 222 (368)
.-.+||+.+++.. .+. ..--+.+-.+.+||+++.. ...+++++..+ +.+-. .. -...........
T Consensus 47 ~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 3557888877543 233 3333344457789998882 24688888643 11111 00 011223334556
Q ss_pred ecCCCeEEEEeecCCCCeEEEEecCc--c-eee--eeec-----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc
Q 017642 223 SQGVGSLVLVCPGLQKGQVRVEHYAS--K-RTK--FIMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (368)
Q Consensus 223 ~~~~~~~~l~~~g~~dg~i~i~~~~~--~-~~~--~~~~-----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~ 292 (368)
-+||+- ++..|.......+|.... . ... .+.. ...---.+...|+|++++.+..+. .|||..+.+
T Consensus 126 L~DG~v--lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s---~i~d~~~n~ 200 (243)
T PF07250_consen 126 LPDGRV--LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS---IIYDYKTNT 200 (243)
T ss_pred CCCCCE--EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---EEEeCCCCe
Confidence 678874 444465544555554321 1 111 1110 011112456689999988888753 688988887
Q ss_pred eeEeeEe
Q 017642 293 LLQEVRR 299 (368)
Q Consensus 293 ~~~~~~~ 299 (368)
.++.+..
T Consensus 201 v~~~lP~ 207 (243)
T PF07250_consen 201 VVRTLPD 207 (243)
T ss_pred EEeeCCC
Confidence 7777664
No 472
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=82.89 E-value=34 Score=30.51 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=60.4
Q ss_pred CceeEEEEeeCc-cEEEeCCcEEEEEcCC-CeEEEEEeccCCC-----eeEEEEecCC--------------CeEEEEee
Q 017642 176 SEVRSVKLRRDR-IIVVLEQKIFVYNFAD-LKLLHQIETIANP-----KGLCAVSQGV--------------GSLVLVCP 234 (368)
Q Consensus 176 ~~v~~~~~~~~~-~~l~~d~~i~vwd~~~-~~~~~~~~~~~~~-----v~~~~~~~~~--------------~~~~l~~~ 234 (368)
+.-..++|...+ .+++.|...-+|.+.- ++....+...... .+.+.+.++| +.++.+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~ 194 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALE 194 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeec
Confidence 556788888876 5666777776776632 2221111111110 1122333322 12233334
Q ss_pred cCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC-cEEEEE
Q 017642 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIF 286 (368)
Q Consensus 235 g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~~i~iw 286 (368)
|..+|.+.-++...+..+.+...-.-.+.++.|||+.+++.+-.-- ...+.|
T Consensus 195 g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 5556766557777766666655555668899999999877664332 214566
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.79 E-value=35 Score=31.69 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred eEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEE-------eccCCCeeEEEEecCC------CeEEEEeec-------
Q 017642 179 RSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQI-------ETIANPKGLCAVSQGV------GSLVLVCPG------- 235 (368)
Q Consensus 179 ~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~------~~~~l~~~g------- 235 (368)
+.|+|.||+++++ . .|.|++++..++...... .........++++|+- ..+++.++-
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Q ss_pred -CCCCeEEE-EecCcceeeeee--------ccCcceEEEEECCCCCEEEEEeCCC
Q 017642 236 -LQKGQVRV-EHYASKRTKFIM--------AHDSRIACFALTQDGQLLATSSTKG 280 (368)
Q Consensus 236 -~~dg~i~i-~~~~~~~~~~~~--------~~~~~i~~v~~sp~g~~l~s~~~dg 280 (368)
.....+++ ++.....+...+ .....-..|+|.|||+++++.++.+
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.70 E-value=57 Score=32.86 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=68.5
Q ss_pred CCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCC----cceEEE------c--ccCCceeEEEEEEeCCeEEEEecCCCC
Q 017642 86 PTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFR----EIFRRD------F--ERGGGIGVVEMLFRCNILALVGGGPDP 151 (368)
Q Consensus 86 ~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~----~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~s~~~d~ 151 (368)
.+...++|+|. .+.||+-+ .|.-.||++.... ...... + ..........+.|.++...++.+++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC--
Confidence 36678999984 45788888 6669999992111 111111 0 0001122335667666544444444
Q ss_pred CCCCCcEEEEeCCCCcEEE---EEecCCceeEEEEeeC--cc-EEEeCCcEEEEEcCC
Q 017642 152 QYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD--RI-IVVLEQKIFVYNFAD 203 (368)
Q Consensus 152 ~~~~~~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~--~~-~l~~d~~i~vwd~~~ 203 (368)
..+.++|+++..... ..+....|.++.-+++ +. +++....|...|+..
T Consensus 224 ----~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 ----SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ----CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 689999988775533 2225678889888887 33 333788899999876
No 475
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.63 E-value=50 Score=33.66 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=47.4
Q ss_pred EEEEEcCCCeEEEEEeccCC----CeeEEEEecCCCeEEEEeecCC----------CCeEEEE--ecCcceeeeeeccCc
Q 017642 196 IFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPGLQ----------KGQVRVE--HYASKRTKFIMAHDS 259 (368)
Q Consensus 196 i~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~g~~----------dg~i~i~--~~~~~~~~~~~~~~~ 259 (368)
|+++|..+++.+..+....+ .+..+.|+......++++.+.. +|.++.+ ...++.+..+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 77788777776665543332 2344556655554233321211 2223331 122222222221111
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (368)
+-.-.+++|-..++++|-.+ . +++||+-..++++.
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~-~-l~~YdlG~K~lLRk 969 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGR-F-LRLYDLGKKKLLRK 969 (1205)
T ss_pred CccceEEeccCCEEEEeccc-E-EEEeeCChHHHHhh
Confidence 12224556766666655543 4 99999976554433
No 476
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.33 E-value=33 Score=29.90 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=49.9
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc--c--EEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA--E--IYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (368)
Q Consensus 261 i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~--~--v~~l~~sp~~~~l~s~s~dg~i~iwd~ 332 (368)
|++|....+|.+|+++-.-.. |.+.|-.+|+.+..+.+.. .+ . -...+|-.|-+++-.+..++.|.|+|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 778888889999999888888 9999999999988886531 11 1 112344445555555567888888886
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.85 E-value=4.4 Score=38.79 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=28.8
Q ss_pred ceEEEEECC----CCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642 260 RIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (368)
Q Consensus 260 ~i~~v~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (368)
....++++. +..+|++.+.|+. +|+||+.+++++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence 345566665 6679999999999 9999999999976653
No 478
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=80.50 E-value=9.5 Score=37.74 Aligned_cols=141 Identities=14% Similarity=0.271 Sum_probs=80.7
Q ss_pred EeCCcEEEEEcCCCeEEEEEeccCCCeeEEEE-ecCC-------CeEEEEeecCCCCeEEE----EecCcceeeeee---
Q 017642 191 VLEQKIFVYNFADLKLLHQIETIANPKGLCAV-SQGV-------GSLVLVCPGLQKGQVRV----EHYASKRTKFIM--- 255 (368)
Q Consensus 191 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~-------~~~~l~~~g~~dg~i~i----~~~~~~~~~~~~--- 255 (368)
..|+.+.+||..++...+.+......|..+.+ .|.. ++++++++ ...+.+ .+.....+..+.
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT---~~e~~ilgvs~d~~T~Els~fnTgl 175 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVAT---EKEVMILGVSKDTKTGELSLFNTGL 175 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhh---hheeeEEEEEeccccceeEEEecce
Confidence 37999999999887666555544444433332 2322 22233321 122222 222222222222
Q ss_pred ---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC--------Cc-------------eeEe-eEeccCcccEEEEE
Q 017642 256 ---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--------GT-------------LLQE-VRRGADRAEIYSLA 310 (368)
Q Consensus 256 ---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~--------~~-------------~~~~-~~~~~~~~~v~~l~ 310 (368)
...-.|.|+.-+.+|+.+++|..| +.||.+.- .+ .+.+ +..+.+...|..++
T Consensus 176 ~vsvqGinV~civs~e~GrIFf~g~~d---~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~ 252 (1263)
T COG5308 176 VVSVQGINVRCIVSEEDGRIFFGGEND---PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLA 252 (1263)
T ss_pred EEeccCceeEEEEeccCCcEEEecCCC---CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhhee
Confidence 233468888888899998888877 45776531 00 0000 11122456788888
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642 311 FSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (368)
Q Consensus 311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~ 337 (368)
.......|.+-+....|+-|.+.+..-
T Consensus 253 vDqsRg~ly~Lr~kS~Vray~itkngl 279 (1263)
T COG5308 253 VDQSRGLLYVLRKKSAVRAYSITKNGL 279 (1263)
T ss_pred ecccccceeeecccceeeeEeeecccc
Confidence 887777888888888899998876544
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.41 E-value=30 Score=34.09 Aligned_cols=140 Identities=8% Similarity=0.011 Sum_probs=76.9
Q ss_pred EEEEcCCCCEEEEEe-CCe----EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642 90 HISFNQDHGCFAAGT-DHG----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (368)
Q Consensus 90 ~~~~s~~g~~l~~~~-d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~ 164 (368)
-+.|--|..+.+++. +.+ +++|.-+..-.. ........-..+.|-|.+..+++-+.|..-..-.|.++..+
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds----~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN 281 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDS----ASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN 281 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeecccccccc----ccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccC
Confidence 457777777887776 322 677753311100 00011112234667777777776654422222456666522
Q ss_pred ---CCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642 165 ---QSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (368)
Q Consensus 165 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 233 (368)
.|+.-........+..++|+-....++ ..+.|++|-..+..-.......-..+.-+.|+|..+..++..
T Consensus 282 GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 282 GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred CcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 233323333556677788877666555 678999998655432222222233456689999887766654
No 480
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=79.81 E-value=29 Score=34.31 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=49.5
Q ss_pred CcceEEEEEC----CCCC--EEEEEeCCCcEEEEEECCCCc-----eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCe
Q 017642 258 DSRIACFALT----QDGQ--LLATSSTKGTLVRIFNTLDGT-----LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326 (368)
Q Consensus 258 ~~~i~~v~~s----p~g~--~l~s~~~dg~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 326 (368)
....+.|+.+ .++. .|+.|+++|+.+|+-.+.... .+.++..-.+..+|..|.+++....|++|+..|.
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV 486 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGV 486 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcE
Confidence 4455666665 4554 678899999866666554421 4555555446678999999998888888988875
Q ss_pred EEE
Q 017642 327 VHV 329 (368)
Q Consensus 327 i~i 329 (368)
++|
T Consensus 487 ~qv 489 (737)
T KOG3611|consen 487 VQV 489 (737)
T ss_pred EEe
Confidence 543
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.11 E-value=46 Score=34.78 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=74.5
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceeEEEEe-eC-c------c--E-EEeCCcEEEEEcCC----CeE---E--EEEeccC
Q 017642 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLR-RD-R------I--I-VVLEQKIFVYNFAD----LKL---L--HQIETIA 214 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~-~~-~------~--~-l~~d~~i~vwd~~~----~~~---~--~~~~~~~ 214 (368)
+.+.+|+.+++.....+. ....|..|..- |. | + + ++.--.|.++-+.- +.. . ..+....
T Consensus 99 n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg 178 (1311)
T KOG1900|consen 99 NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDG 178 (1311)
T ss_pred CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCC
Confidence 789999999877666665 45555555432 21 1 1 1 11344555554421 111 0 1222223
Q ss_pred CCeeEEEEecCCCeEEEEeecCCCCeEEE--EecCc----c---e--------------eeeee-ccCcceEEEEECCCC
Q 017642 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYAS----K---R--------------TKFIM-AHDSRIACFALTQDG 270 (368)
Q Consensus 215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~----~---~--------------~~~~~-~~~~~i~~v~~sp~g 270 (368)
..|.++....+|+ +++ +| .||.++= +.... + . +..+. .+..+|..+++...-
T Consensus 179 ~~V~~I~~t~nGR-IF~--~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 179 VSVNCITYTENGR-IFF--AG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ceEEEEEeccCCc-EEE--ee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 4566676566665 233 23 5665543 22110 1 0 11223 567799999998888
Q ss_pred CEEEEEeCCCcEEEEEECCC
Q 017642 271 QLLATSSTKGTLVRIFNTLD 290 (368)
Q Consensus 271 ~~l~s~~~dg~~i~iwd~~~ 290 (368)
.+|.+-++.|. |.+||+..
T Consensus 255 ~IlY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred ceeeeeccCce-EEEEEccC
Confidence 89999999999 99999975
No 482
>PRK13684 Ycf48-like protein; Provisional
Probab=79.04 E-value=46 Score=29.54 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=107.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEccc--CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER--GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (368)
Q Consensus 85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd 162 (368)
...+++|.|..+..-+++|.++.| |....+.....+.... .....+.++.+.++..+++ +.. +.|..-+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~-G~~------g~i~~S~ 115 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTL--LETNDGGETWEERSLDLPEENFRLISISFKGDEGWIV-GQP------SLLLHTT 115 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEE--EEEcCCCCCceECccCCcccccceeeeEEcCCcEEEe-CCC------ceEEEEC
Confidence 347889999876777787876543 4443433333322110 1223355666665543333 322 3332221
Q ss_pred CCCCcEEEEEe----cCCceeEE-EEeeCccEEE-eCCcEEEEEcCCCeEEEEEe-ccCCCeeEEEEecCCCeEEEEeec
Q 017642 163 DHQSRCIGELS----FRSEVRSV-KLRRDRIIVV-LEQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPG 235 (368)
Q Consensus 163 ~~~~~~~~~~~----~~~~v~~~-~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g 235 (368)
+.|+.-..+. ..+....+ ...++..+++ ..|.|..=+ ..|+.=..+. .....+..+.+.+++. ++++ |
T Consensus 116 -DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~-g 190 (334)
T PRK13684 116 -DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK--YVAV-S 190 (334)
T ss_pred -CCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe--EEEE-e
Confidence 2222111111 11112222 2222222222 233332211 1222211111 1234566777877764 3443 3
Q ss_pred CCCCeEEE-EecCcceeeeee-ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec--cCcccEEEEEE
Q 017642 236 LQKGQVRV-EHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAF 311 (368)
Q Consensus 236 ~~dg~i~i-~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~ 311 (368)
..|.+.. ++..++.-..+. .-...++++.+.++++.++++ ..|. +++=....|+........ .....+.++.+
T Consensus 191 -~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~ 267 (334)
T PRK13684 191 -SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLESWSKPIIPEITNGYGYLDLAY 267 (334)
T ss_pred -CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCccccccCCccccccceeeEEE
Confidence 4566654 332222222222 234578999999999876654 4565 543234444433322211 01235788999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCC
Q 017642 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 312 sp~~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
.+++..+++ +.+|.|. .....++
T Consensus 268 ~~~~~~~~~-G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 268 RTPGEIWAG-GGNGTLL-VSKDGGK 290 (334)
T ss_pred cCCCCEEEE-cCCCeEE-EeCCCCC
Confidence 998876655 4567554 3444443
No 483
>PHA02790 Kelch-like protein; Provisional
Probab=78.89 E-value=58 Score=30.63 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=46.1
Q ss_pred CCCEEEEEe-CC-----eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642 96 DHGCFAAGT-DH-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (368)
Q Consensus 96 ~g~~l~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~ 169 (368)
++.++++|+ ++ .+..||...........+. .... ........+.+++++|..+ ...+..||..+++..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~-~~r~-~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN-SPRL-YASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWV 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC-chhh-cceEEEECCEEEEECCcCC----CCceEEEECCCCeEE
Confidence 455667776 32 2556665543322222221 1111 1223334555666655321 146888987765433
Q ss_pred EE--EecCCceeEEEEeeCccEEEe------CCcEEEEEcCCCe
Q 017642 170 GE--LSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLK 205 (368)
Q Consensus 170 ~~--~~~~~~v~~~~~~~~~~~l~~------d~~i~vwd~~~~~ 205 (368)
.. +.....-.+++ .-+|++.+. ...+..||.++.+
T Consensus 345 ~~~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 345 NMPSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred ECCCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 22 11111111222 234544441 2356778876553
No 484
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=78.32 E-value=15 Score=36.75 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=52.1
Q ss_pred CeEEEEecCcceeeee-eccCcceEEEEECCCCCEEEE-EeCCC---c-EEEEEECCC-CceeEeeEeccCcccEEEEEE
Q 017642 239 GQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLAT-SSTKG---T-LVRIFNTLD-GTLLQEVRRGADRAEIYSLAF 311 (368)
Q Consensus 239 g~i~i~~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s-~~~dg---~-~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~ 311 (368)
+.+.+-+.++...+.+ ..+..+|.+-+|||||+.|+. .+.++ . .|.+-|+.+ +..+.++.. ....|-.-..
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v--e~aaiprwrv 406 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV--ENAAIPRWRV 406 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec--ccccccceEe
Confidence 4677766666666656 566788999999999999887 44444 2 288888875 333345554 4556666666
Q ss_pred ecCCCEE
Q 017642 312 SSNAQWL 318 (368)
Q Consensus 312 sp~~~~l 318 (368)
..+|..+
T Consensus 407 ~e~gdt~ 413 (912)
T TIGR02171 407 LENGDTV 413 (912)
T ss_pred cCCCCeE
Confidence 6766643
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.58 E-value=0.56 Score=42.52 Aligned_cols=139 Identities=10% Similarity=0.091 Sum_probs=87.5
Q ss_pred eEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee
Q 017642 179 RSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM 255 (368)
Q Consensus 179 ~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~ 255 (368)
....|.+.+..++ .+..+..||- .++.+.... ..+..-.++|..+++..+++ +...+.+.+|+.+.+....++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavl--Aek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVL--AEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhh--hhcCCCeeechhhhhhHHHHh
Confidence 3445666655555 4667777883 444443332 22333346676667654444 456889999998876655554
Q ss_pred ccCc-ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642 256 AHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (368)
Q Consensus 256 ~~~~-~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg 325 (368)
.... .-.-+.|++.+..++.+...|. +.|++..+.+.+... +.|...+.+++|.+.+..+ .++.|.
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn-~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGN-IVIYNHGTSRRIIVM--GKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccc-eEEEeccchhhhhhh--cccccceeEEEecccceee-ecCcHH
Confidence 2211 1122678988889999999999 999997766655333 3367788999998866543 444444
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.30 E-value=6.2 Score=20.79 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.5
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEe
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQE 296 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (368)
.++.++.+|. +..+|.++|+.+..
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEE
Confidence 5777888888 99999988887654
No 487
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.56 E-value=11 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCcEEEEEecCCceeEEEE
Q 017642 156 NKVMIWDDHQSRCIGELSFRSEVRSVKL 183 (368)
Q Consensus 156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~ 183 (368)
+.|.++|..+++.+..+.....-..++|
T Consensus 14 ~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 14 NTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 8999999998888888775444445544
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.75 E-value=62 Score=29.25 Aligned_cols=185 Identities=12% Similarity=0.156 Sum_probs=97.0
Q ss_pred CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEee----CccE--E-E-e---C--CcEEEEEcC--CC
Q 017642 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR----DRII--V-V-L---E--QKIFVYNFA--DL 204 (368)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l-~-~---d--~~i~vwd~~--~~ 204 (368)
....+++.... +-+.+||+ .|+.++.+. .+.+..+..-. +|+. + + . + ..|++|.+. ++
T Consensus 67 ~kSlIigTdK~-----~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 67 AKSLIIGTDKK-----GGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GG-EEEEEETT-----TEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred ccceEEEEeCC-----CCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 34444554544 78999995 456666654 34445444332 2332 2 2 2 2 468899774 34
Q ss_pred eEEEEEec-------cCCCeeEEEEec--CCCeEEEEeecCCCCeEEEEecC----c----ceeeeeeccCcceEEEEEC
Q 017642 205 KLLHQIET-------IANPKGLCAVSQ--GVGSLVLVCPGLQKGQVRVEHYA----S----KRTKFIMAHDSRIACFALT 267 (368)
Q Consensus 205 ~~~~~~~~-------~~~~v~~~~~~~--~~~~~~l~~~g~~dg~i~i~~~~----~----~~~~~~~~~~~~i~~v~~s 267 (368)
. +..+.. ....+..+|+-. ....+++.. ...+|.+..|... + +.++.+.. ...+..|...
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v-~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVD 216 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFV-NGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVD 216 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEE-EETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEE
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEE-ecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEe
Confidence 3 333321 112345566643 222333333 4567877664332 2 33455544 3467888888
Q ss_pred CCCCEEEEEeCCCcEEEEEECCC-----CceeEeeEeccCcccEEEEEEec--CCC-EEEEEe-CCCeEEEEEccCC
Q 017642 268 QDGQLLATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFSS--NAQ-WLAVSS-DKGTVHVFNLKVN 335 (368)
Q Consensus 268 p~g~~l~s~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~l~~sp--~~~-~l~s~s-~dg~i~iwd~~~~ 335 (368)
....+|+.+-++.. |.-|+.+- ++.+....+......|..|++-. +++ ||++.+ .+++..||+.+..
T Consensus 217 De~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 217 DETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 77779999999987 77777752 22222222222345678887753 443 555554 6778999998753
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=75.10 E-value=97 Score=31.24 Aligned_cols=117 Identities=10% Similarity=0.048 Sum_probs=72.2
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc------eeeeeeccC----------cceEEEEECCCCCEEEEEe
Q 017642 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK------RTKFIMAHD----------SRIACFALTQDGQLLATSS 277 (368)
Q Consensus 214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~------~~~~~~~~~----------~~i~~v~~sp~g~~l~s~~ 277 (368)
..+...++|+|.....+.+. ...|...||+.... .......+. ..-..|.|.++-+.|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 44667799998776644333 46899999998221 111111111 2234788988878888777
Q ss_pred CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCC
Q 017642 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKVNS 336 (368)
Q Consensus 278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~ 336 (368)
... +.++|+.+......+........|.++.-+++ +..++-. ...|...++....
T Consensus 223 r~~--l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~~ 279 (765)
T PF10214_consen 223 RSK--LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSSS 279 (765)
T ss_pred CCc--eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCCC
Confidence 654 89999988765332322224567999988887 3333332 3568788887743
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=74.79 E-value=65 Score=29.09 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=76.1
Q ss_pred eCCcEEEEEcCCCeEEEEEeccCCCeeEEEE----ecCCCeEEEEeecCCC---CeEEEEecCc--ceeeeeec------
Q 017642 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAV----SQGVGSLVLVCPGLQK---GQVRVEHYAS--KRTKFIMA------ 256 (368)
Q Consensus 192 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~l~~~g~~d---g~i~i~~~~~--~~~~~~~~------ 256 (368)
.++-+.+||+. |+.++.+.. +..+.+.+ .-.++..-|+.....+ ..|+++..+. ..+..+..
T Consensus 76 K~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~ 152 (381)
T PF02333_consen 76 KKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIA 152 (381)
T ss_dssp TTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE
T ss_pred CCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccc
Confidence 35789999984 666776642 23333332 2345554343323232 4688865543 33333321
Q ss_pred -cCcceEEEEE--CC-CCC-EEEEEeCCCcEEEEEECC---CC----ceeEeeEeccCcccEEEEEEecCCCEEEEEeCC
Q 017642 257 -HDSRIACFAL--TQ-DGQ-LLATSSTKGTLVRIFNTL---DG----TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (368)
Q Consensus 257 -~~~~i~~v~~--sp-~g~-~l~s~~~dg~~i~iwd~~---~~----~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 324 (368)
....++.+++ ++ +|. +.+....+|. +..|.+. ++ +.+++|.. ...+..+........|+.+-++
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~-~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGR-VEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSE-EEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTEEEEEETT
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCce-EEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecccCCEEEecCc
Confidence 1124666665 33 455 6666778887 8777764 33 45677765 3478889998888899999888
Q ss_pred CeEEEEEcc
Q 017642 325 GTVHVFNLK 333 (368)
Q Consensus 325 g~i~iwd~~ 333 (368)
.-|+-|+.+
T Consensus 229 ~GIW~y~Ae 237 (381)
T PF02333_consen 229 VGIWRYDAE 237 (381)
T ss_dssp TEEEEEESS
T ss_pred cEEEEEecC
Confidence 767777665
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=74.30 E-value=16 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=24.5
Q ss_pred cEEEEEEecCCCEEEEEe-CCCeEEEEEccC
Q 017642 305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (368)
Q Consensus 305 ~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~ 334 (368)
.-+.|.++|++++|.+++ ..+.|++|+.++
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 457899999999887765 678899998764
No 492
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.43 E-value=11 Score=19.34 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=18.0
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEE
Q 017642 306 IYSLAFSSNAQWLAVSSDKGTVHVF 330 (368)
Q Consensus 306 v~~l~~sp~~~~l~s~s~dg~i~iw 330 (368)
..+++++++|+++++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4677888888877777677777664
No 493
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.51 E-value=13 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=22.9
Q ss_pred EEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (368)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (368)
.++.++.+|. |.-.|.++|+.+-.++..
T Consensus 2 ~v~~~~~~g~-l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGY-LYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSE-EEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCE-EEEEECCCCCEEEeeeCC
Confidence 3556688999 999999999999888753
No 494
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.49 E-value=38 Score=25.35 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC--------CCcEEEEEecCCceeEEEEee-----CccEEE--eCCcE
Q 017642 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--------QSRCIGELSFRSEVRSVKLRR-----DRIIVV--LEQKI 196 (368)
Q Consensus 132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~--------~~~~~~~~~~~~~v~~~~~~~-----~~~~l~--~d~~i 196 (368)
|..-.|++....|+.+..- |+|.|.+.. ....+..+.....|++++-.+ +...|+ ....+
T Consensus 1 VaiGkfDG~~pcL~~aT~~-----gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~l 75 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTG-----GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSL 75 (136)
T ss_pred CeEEEeCCCceeEEEEecC-----CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceE
Q ss_pred EEEEcCCCeEEEEEeccCCCeeEEEEecCCC--eEEEEeecCCCCeEEEEecCcceee
Q 017642 197 FVYNFADLKLLHQIETIANPKGLCAVSQGVG--SLVLVCPGLQKGQVRVEHYASKRTK 252 (368)
Q Consensus 197 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~g~~dg~i~i~~~~~~~~~ 252 (368)
..||+.....+..-+.+ +.+.++.+-.-+. ..++++.| +..|.-++..+..+.
T Consensus 76 laYDV~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGG--ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 76 LAYDVENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGG--NCSIQGFDYEGNEIF 130 (136)
T ss_pred EEEEcccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECc--eEEEEEeCCCCcEEE
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.97 E-value=80 Score=28.86 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=78.0
Q ss_pred ceeEEEEeeCccEEE--eCCcEEE-EEcCCCeEE-EEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc--
Q 017642 177 EVRSVKLRRDRIIVV--LEQKIFV-YNFADLKLL-HQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-- 249 (368)
Q Consensus 177 ~v~~~~~~~~~~~l~--~d~~i~v-wd~~~~~~~-~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-- 249 (368)
....+..++++.+++ ..|.+.. || .|+.. +.+ ......+..+.+.+++.. +++ + ..|.+..-...+.
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l-~l~--g-~~G~l~~S~d~G~~~ 313 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGL-WLL--T-RGGGLYVSKGTGLTE 313 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCE-EEE--e-CCceEEEecCCCCcc
Confidence 344556677777666 4454433 33 33321 111 123445677888877763 333 2 4677666222222
Q ss_pred ---eeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe-ccCcccEEEEEEecCCCEEEEEeC
Q 017642 250 ---RTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSD 323 (368)
Q Consensus 250 ---~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~ 323 (368)
....... ....+..+.|.+++..++ ++..|. +... ...|+.-..... ..-...++.+.|.++++.+++| .
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~-v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~ 389 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGI-LLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N 389 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEE-EECCCc-EEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence 1222221 223588999998877554 555675 4444 455665444331 1124568899998877766655 6
Q ss_pred CCeEEEE
Q 017642 324 KGTVHVF 330 (368)
Q Consensus 324 dg~i~iw 330 (368)
+|.|.-|
T Consensus 390 ~G~il~~ 396 (398)
T PLN00033 390 DGVLLRY 396 (398)
T ss_pred CcEEEEe
Confidence 7876554
No 496
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=71.15 E-value=98 Score=29.52 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCCCEEEEEeCCeEEEEEecCC-CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC------------------CCC
Q 017642 95 QDHGCFAAGTDHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ------------------YPL 155 (368)
Q Consensus 95 ~~g~~l~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~------------------~~~ 155 (368)
.||++|.+..++.+.|++..+. +......+.-... +..+..+.+.+.+++...... ...
T Consensus 20 TDG~yIY~v~~~~l~Iida~p~~~~~~~s~I~~~~~--~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (521)
T PF09826_consen 20 TDGEYIYVVSGGRLYIIDAYPAEEMKVVSRIDLDGS--PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSS 97 (521)
T ss_pred ECCCEEEEEeCCEEEEEECCCchhceEEEEEecCCC--hhheEEcCCEEEEEEeccccccccccccccccccccccCCce
Confidence 4899999999999999998432 2222233321222 667777777777776443210 112
Q ss_pred CcEEEEeCCCC---cEEEEEecCCceeEEEEeeCccEEEeCCcEEEE
Q 017642 156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVY 199 (368)
Q Consensus 156 ~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vw 199 (368)
-.+.+||+.+. +.+.++...+...+.+...+..+++....+.++
T Consensus 98 t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~ 144 (521)
T PF09826_consen 98 TKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY 144 (521)
T ss_pred eEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence 36788887654 344555555656555555555556555555555
No 497
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.11 E-value=74 Score=28.11 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=40.9
Q ss_pred ceEEEEECCCCCEEEEEeCC------CcEEEEEECCCCceeEeeE-------------eccCcccEEEEEEecCCCEEEE
Q 017642 260 RIACFALTQDGQLLATSSTK------GTLVRIFNTLDGTLLQEVR-------------RGADRAEIYSLAFSSNAQWLAV 320 (368)
Q Consensus 260 ~i~~v~~sp~g~~l~s~~~d------g~~i~iwd~~~~~~~~~~~-------------~~~~~~~v~~l~~sp~~~~l~s 320 (368)
...+|++.++|.++++.-.+ -. |+.++.. |+.+..+. .........+|+++|||+.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~-I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPR-IRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCE-EEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 44578887788777665555 56 8888865 66554442 1113457889999999996665
Q ss_pred Ee
Q 017642 321 SS 322 (368)
Q Consensus 321 ~s 322 (368)
+.
T Consensus 164 ~~ 165 (326)
T PF13449_consen 164 AM 165 (326)
T ss_pred EE
Confidence 53
No 498
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=69.93 E-value=2.2 Score=30.69 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=11.2
Q ss_pred CccccccCCCCCCCCC
Q 017642 1 MAALSAYSSPWPEPTP 16 (368)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (368)
+++|+|||||++|++-
T Consensus 4 ~~~L~gCSSpP~P~~v 19 (113)
T PF13117_consen 4 ALMLSGCSSPPEPPPV 19 (113)
T ss_pred heeehhcCCCCCCCCc
Confidence 3678999887665544
No 499
>PHA02790 Kelch-like protein; Provisional
Probab=68.75 E-value=1.1e+02 Score=28.94 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=33.1
Q ss_pred CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCC
Q 017642 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (368)
Q Consensus 269 ~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~ 336 (368)
+|++.+.| |. +.+||..+++-.. +..-.....-.+++. -+|++.+.||.+ ..+..||..+++
T Consensus 407 ~~~IYv~G---G~-~e~ydp~~~~W~~-~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG---RN-AEFYCESSNTWTL-IDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC---Cc-eEEecCCCCcEeE-cCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 56666666 35 7889887654332 111101111112222 367777777754 357788876654
No 500
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=68.73 E-value=1.8e+02 Score=31.72 Aligned_cols=147 Identities=12% Similarity=0.190 Sum_probs=84.0
Q ss_pred cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEE-e-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce
Q 017642 174 FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI-E-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (368)
Q Consensus 174 ~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~ 250 (368)
|...++.|.-+++|..+= .|+.++.||....+ +.. . .....+..+...-||+ +++ .++...++.-....
T Consensus 361 H~A~LTgv~~~~~ge~lRlHd~~LY~~d~~~~~--Wk~~~~~~d~~~S~Ls~qgdG~--lYA----k~~~~l~nLSs~~~ 432 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRLHDDRLYQFDPNTAR--WKPPPDKSDTPFSSLSRQGDGK--LYA----KDDDTLVNLSSGQM 432 (1774)
T ss_pred HHHHhhccccCCCCCeEEeecCceeeeccccce--ecCCCCcccchhhhhcccCCCc--eEe----cCCCceeecCCCCc
Confidence 566778888888887776 79999999976542 111 0 1122333333333333 222 22222222222111
Q ss_pred eeeeeccCcceEEEEECCCCCE-EEEEeCCCcEEEEEECCCC------ce--eEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642 251 TKFIMAHDSRIACFALTQDGQL-LATSSTKGTLVRIFNTLDG------TL--LQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (368)
Q Consensus 251 ~~~~~~~~~~i~~v~~sp~g~~-l~s~~~dg~~i~iwd~~~~------~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 321 (368)
. ...-..|.+...+++|.. +.++-.... +.+|++... +. ...+..+ .....+|.+++| .|+++
T Consensus 433 ~---~~~v~~l~sfSv~~~g~vA~L~~~d~q~-~qL~~m~~~~a~~~p~~~~~L~L~dG--~a~A~~VgLs~d--rLFvA 504 (1774)
T PF11725_consen 433 S---EAEVDKLKSFSVAPDGTVAMLTGKDGQT-LQLHDMSPVDAPPTPRKTKTLQLADG--KAQAQSVGLSND--RLFVA 504 (1774)
T ss_pred c---hhhhhhcccccccCCCceeeeecCCCcc-eeeeccCccccccCccceeeeeccCC--chhhhheeecCC--eEEEE
Confidence 1 111234677778899986 555555556 899998753 11 2223332 236778888876 57778
Q ss_pred eCCCeEEEEEccCCC
Q 017642 322 SDKGTVHVFNLKVNS 336 (368)
Q Consensus 322 s~dg~i~iwd~~~~~ 336 (368)
..+|.++.=++...+
T Consensus 505 DseGkLYsa~l~~~~ 519 (1774)
T PF11725_consen 505 DSEGKLYSADLPAAQ 519 (1774)
T ss_pred eCCCCEEeccccccc
Confidence 889988887776544
Done!