BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017643
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 35/189 (18%)
Query: 174 YARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSK----Y 229
YAR L + + C +V+YLD D++V D + LW T LG +GA C F + Y
Sbjct: 84 YARLKLGEYIADC-DKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDLFVERQEGY 139
Query: 230 FTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELG 289
+D + YFN GV++I+L KWRR + W+E K Y+
Sbjct: 140 KQKIGMADGEY----------YFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDE 189
Query: 290 SLPPFLLVFAGHVAPIEHRWN----QHGLGGDNVRGSCRNLHP---------GPVSLLHW 336
+ L F G V R+N + + R + R+ P PV++ H+
Sbjct: 190 DILNGL--FKGGVCYANSRFNFMPTNYAFMAN--RFASRHTDPLYRDRTNTVMPVAVSHY 245
Query: 337 SGSGKPWLR 345
G KPW R
Sbjct: 246 CGPAKPWHR 254
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 174 YARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTAT 233
YAR L + + C +V+YLD D++V D + LW T LG +GA F
Sbjct: 84 YARLKLGEYIADC-DKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAS-------IDLFVER 135
Query: 234 FWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPP 293
K+ +G YFN GV++I+L KWRR + W+E K Y+ +
Sbjct: 136 QEGYKQKIGXADGE--YYFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQYQDQDILN 193
Query: 294 FLLVFAGHVAPIEHRWN----QHGLGGDNVRGSCRNLHP---------GPVSLLHWSGSG 340
L F G V R+N + + + R+ P PV++ H+ G
Sbjct: 194 GL--FKGGVCYANSRFNFXPTNYAFXANWF--ASRHTDPLYRDRTNTVXPVAVSHYCGPA 249
Query: 341 KPWLR 345
KPW R
Sbjct: 250 KPWHR 254
>pdb|3BJ7|A Chain A, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|B Chain B, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|C Chain C, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ7|D Chain D, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|A Chain A, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|B Chain B, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|C Chain C, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
pdb|3BJ8|D Chain D, SpermineSPERMIDINE N1-Acetyltransferase From Mouse:
Crystal Structure Of A Ternary Complex Reveals
Solvent-Mediated Spermine Binding
Length = 171
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 74 TSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNL 133
+ + AS C L + EY+ + LQ E+ F+H LV++
Sbjct: 2 AKFKIRPATASDCSDILRLIKELAKYEYMEDQVILTEKDLQEDGFGEHPFYHCLVAEVPK 61
Query: 134 ETLVRSTFPQLKFKVYYF--DPEIVRNL 159
E + F +YYF DP I + L
Sbjct: 62 EHWTPEGHSIVGFAMYYFTYDPWIGKLL 89
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 259 IDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFA 299
I+L W Y +R E + + S + +LG LPP L+V A
Sbjct: 208 IELXVWFGRQYLKRPEEAYDFKASPLLADLGGLPPALVVTA 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,737,007
Number of Sequences: 62578
Number of extensions: 506108
Number of successful extensions: 1329
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 6
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)