Your job contains 1 sequence.
>017645
MRLVQRLPLMANSLATTGLSKTSWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQSQ
TSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGK
LLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD
EKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVP
PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVE
GKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQIE
AADDSNSC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017645
(368 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028215 - symbol:AT1G45110 species:3702 "Arabi... 1161 6.9e-118 1
UNIPROTKB|Q3AG07 - symbol:rsmI "Ribosomal RNA small subun... 600 1.9e-58 1
TIGR_CMR|CHY_0055 - symbol:CHY_0055 "conserved hypothetic... 600 1.9e-58 1
UNIPROTKB|Q820W0 - symbol:rsmI "Ribosomal RNA small subun... 558 5.5e-54 1
TIGR_CMR|CBU_1739 - symbol:CBU_1739 "tetrapyrrole (Corrin... 558 5.5e-54 1
UNIPROTKB|Q74FF6 - symbol:rsmI "Ribosomal RNA small subun... 556 8.9e-54 1
TIGR_CMR|GSU_0653 - symbol:GSU_0653 "tetrapyrrole methyla... 556 8.9e-54 1
UNIPROTKB|Q48EE8 - symbol:rsmI "Ribosomal RNA small subun... 545 1.3e-52 1
TIGR_CMR|DET_0386 - symbol:DET_0386 "tetrapyrrole methyla... 518 9.5e-50 1
UNIPROTKB|Q4K6I3 - symbol:yraL "Ribosomal RNA small subun... 511 5.2e-49 1
UNIPROTKB|P67087 - symbol:rsmI "16S rRNA 2'-O-ribose C140... 509 8.5e-49 1
UNIPROTKB|Q60CC2 - symbol:rsmI "Ribosomal RNA small subun... 499 9.8e-48 1
UNIPROTKB|Q9KUD9 - symbol:rsmI "Ribosomal RNA small subun... 495 2.6e-47 1
TIGR_CMR|VC_0582 - symbol:VC_0582 "conserved hypothetical... 495 2.6e-47 1
TIGR_CMR|BA_0033 - symbol:BA_0033 "tetrapyrrole methylase... 491 6.9e-47 1
UNIPROTKB|Q0C452 - symbol:rsmI "Ribosomal RNA small subun... 486 2.3e-46 1
UNIPROTKB|Q47VU3 - symbol:rsmI "Ribosomal RNA small subun... 478 1.6e-45 1
TIGR_CMR|CPS_4431 - symbol:CPS_4431 "conserved hypothetic... 478 1.6e-45 1
UNIPROTKB|Q8EK05 - symbol:rsmI "Ribosomal RNA small subun... 470 1.2e-44 1
TIGR_CMR|SO_0301 - symbol:SO_0301 "conserved hypothetical... 470 1.2e-44 1
UNIPROTKB|Q5LWE3 - symbol:rsmI "Ribosomal RNA small subun... 419 2.9e-39 1
TIGR_CMR|SPO_0399 - symbol:SPO_0399 "tetrapyrrole methyla... 419 2.9e-39 1
UNIPROTKB|P0A640 - symbol:rsmI "Ribosomal RNA small subun... 348 9.8e-32 1
UNIPROTKB|Q5HX11 - symbol:rsmI "Ribosomal RNA small subun... 307 2.2e-27 1
TIGR_CMR|CJE_0150 - symbol:CJE_0150 "tetrapyrrole methyla... 307 2.2e-27 1
TAIR|locus:2164506 - symbol:UPM1 "AT5G40850" species:3702... 118 0.00016 2
TIGR_CMR|BA_1445 - symbol:BA_1445 "uroporphyrin-III C-met... 116 0.00023 1
TIGR_CMR|CHY_0778 - symbol:CHY_0778 "uroporphyrin-III C-m... 115 0.00029 1
>TAIR|locus:2028215 [details] [associations]
symbol:AT1G45110 species:3702 "Arabidopsis thaliana"
[GO:0008152 "metabolic process" evidence=IEA;ISS] [GO:0008168
"methyltransferase activity" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0010583 "response to
cyclopentenone" evidence=RCA] HAMAP:MF_01877 InterPro:IPR000878
InterPro:IPR008189 InterPro:IPR014776 InterPro:IPR014777
InterPro:IPR018063 Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008168
Gene3D:3.30.950.10 Gene3D:3.40.1010.10 SUPFAM:SSF53790
eggNOG:COG0313 KO:K07056 PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
EMBL:BT010558 EMBL:AK229448 IPI:IPI00519100 RefSeq:NP_175126.2
UniGene:At.38737 ProteinModelPortal:Q6NQA0 SMR:Q6NQA0 STRING:Q6NQA0
PaxDb:Q6NQA0 PRIDE:Q6NQA0 EnsemblPlants:AT1G45110.1 GeneID:841078
KEGG:ath:AT1G45110 TAIR:At1g45110 HOGENOM:HOG000195942
InParanoid:Q6NQA0 OMA:REFIAFH PhylomeDB:Q6NQA0
ProtClustDB:CLSN2680401 Genevestigator:Q6NQA0 Uniprot:Q6NQA0
Length = 343
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 230/337 (68%), Positives = 271/337 (80%)
Query: 31 SFLRTQTLLNSLSLYPKINYXXXXXXXXXXTSPDFSNLILEQSSKRGPLEPGLYLVATPI 90
SFLRT TL S+ + +S +F++ + + SKRGPL+PGLYLV TPI
Sbjct: 9 SFLRTSTL----SILFRSPILSTTAAISFCSSSEFADSVAKDDSKRGPLKPGLYLVGTPI 64
Query: 91 GNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRL 150
GNLEDITLRA+RVL+SA+VILSEDTRHSGKLLQYYNIK LLSYHKFNE+QREQ VL RL
Sbjct: 65 GNLEDITLRAIRVLRSADVILSEDTRHSGKLLQYYNIKAQLLSYHKFNEAQREQAVLTRL 124
Query: 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTF 210
KQGEIVALISDAGTPGISDPGT+LAK+C E I V+PIPGA A VAALSASGL TDEFTF
Sbjct: 125 KQGEIVALISDAGTPGISDPGTQLAKMCAKENIDVIPIPGACAVVAALSASGLETDEFTF 184
Query: 211 VGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKM 270
VGFLPKH+ +R ERL++S+NE +TQIFYVPPHKL QFLEET+ FG SR+CVIAREITK+
Sbjct: 185 VGFLPKHSGTRKERLIVSSNETRTQIFYVPPHKLSQFLEETTPYFGESRQCVIAREITKL 244
Query: 271 HEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLS 330
HEEFWRG++ EAK+ F QPKGEIT+L+EGK E P+E QLE+ELRGLIS GH+LS
Sbjct: 245 HEEFWRGSIAEAKQEFLIRQPKGEITLLIEGKEETKAENPTESQLEEELRGLISDGHSLS 304
Query: 331 MAVKLVAQGTSVRRKTIYSLALRKFGKQIEAADDSNS 367
AVK VA+ TS+R+K +YSLAL+KFGKQI ++ +
Sbjct: 305 TAVKTVAERTSMRKKEVYSLALKKFGKQIRVEEEDEA 341
>UNIPROTKB|Q3AG07 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 Pfam:PF00590
PIRSF:PIRSF005917 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 eggNOG:COG0313
KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
HOGENOM:HOG000195942 RefSeq:YP_358927.1 ProteinModelPortal:Q3AG07
STRING:Q3AG07 GeneID:3726369 KEGG:chy:CHY_0055 PATRIC:21273307
BioCyc:CHYD246194:GJCN-55-MONOMER Uniprot:Q3AG07
Length = 269
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 127/271 (46%), Positives = 175/271 (64%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TP+GNL+DITLRAL LK ++I +EDTRH+ KLL +Y IK PLLSYH+ N +
Sbjct: 4 LYLVPTPLGNLKDITLRALDTLKEVDIIAAEDTRHTLKLLNHYEIKKPLLSYHEHNRREA 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L L QG+ VAL++DAGTPGISDPG ++ + + E V +PGASA + AL+ASG
Sbjct: 64 GKKILELLAQGKQVALVTDAGTPGISDPGEDIVREALKEGYKVEALPGASALIVALAASG 123
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L T F F GFLP+ A R + L + E +T IFY PH+LL+ LE+ + FG +RR V
Sbjct: 124 LTTSRFCFEGFLPRKAGDREKWLRELSRERRTMIFYEAPHRLLKTLEDLAKHFGENRRMV 183
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGL 322
+ARE+TK+HEE+ RG++ E F +PKGE ++VEG P E +E+ +R
Sbjct: 184 VARELTKIHEEYIRGSIAEVLSHFKEKEPKGEFVLVVEGAP------PEEKNVEEFVREC 237
Query: 323 ISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353
I G + AV L+ + ++K IY L L+
Sbjct: 238 IERGLSQKEAV-LLGRELGFKKKEIYKLYLQ 267
>TIGR_CMR|CHY_0055 [details] [associations]
symbol:CHY_0055 "conserved hypothetical protein TIGR00096"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 Pfam:PF00590
PIRSF:PIRSF005917 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 eggNOG:COG0313
KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
HOGENOM:HOG000195942 RefSeq:YP_358927.1 ProteinModelPortal:Q3AG07
STRING:Q3AG07 GeneID:3726369 KEGG:chy:CHY_0055 PATRIC:21273307
BioCyc:CHYD246194:GJCN-55-MONOMER Uniprot:Q3AG07
Length = 269
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 127/271 (46%), Positives = 175/271 (64%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TP+GNL+DITLRAL LK ++I +EDTRH+ KLL +Y IK PLLSYH+ N +
Sbjct: 4 LYLVPTPLGNLKDITLRALDTLKEVDIIAAEDTRHTLKLLNHYEIKKPLLSYHEHNRREA 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L L QG+ VAL++DAGTPGISDPG ++ + + E V +PGASA + AL+ASG
Sbjct: 64 GKKILELLAQGKQVALVTDAGTPGISDPGEDIVREALKEGYKVEALPGASALIVALAASG 123
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L T F F GFLP+ A R + L + E +T IFY PH+LL+ LE+ + FG +RR V
Sbjct: 124 LTTSRFCFEGFLPRKAGDREKWLRELSRERRTMIFYEAPHRLLKTLEDLAKHFGENRRMV 183
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGL 322
+ARE+TK+HEE+ RG++ E F +PKGE ++VEG P E +E+ +R
Sbjct: 184 VARELTKIHEEYIRGSIAEVLSHFKEKEPKGEFVLVVEGAP------PEEKNVEEFVREC 237
Query: 323 ISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353
I G + AV L+ + ++K IY L L+
Sbjct: 238 IERGLSQKEAV-LLGRELGFKKKEIYKLYLQ 267
>UNIPROTKB|Q820W0 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01877 InterPro:IPR000878
InterPro:IPR008189 InterPro:IPR011761 InterPro:IPR014776
InterPro:IPR014777 InterPro:IPR018063 Pfam:PF00590
PIRSF:PIRSF005917 PROSITE:PS01296 PROSITE:PS50975 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.950.10 Gene3D:3.40.1010.10 SUPFAM:SSF53790
GO:GO:0000453 GO:GO:0070677 HOGENOM:HOG000195941 KO:K07056
OMA:EITKTWE PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
RefSeq:NP_820719.1 ProteinModelPortal:Q820W0 GeneID:1209650
KEGG:cbu:CBU_1739 PATRIC:17932221 ProtClustDB:CLSK914992
BioCyc:CBUR227377:GJ7S-1713-MONOMER Uniprot:Q820W0
Length = 285
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 127/272 (46%), Positives = 168/272 (61%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+ ATPIGN EDITLRA+ L+S ++I +EDTRHS KLL++Y IKTPLLS H+ NE+ R
Sbjct: 6 LYITATPIGNREDITLRAIDTLRSVDLIAAEDTRHSKKLLEHYGIKTPLLSLHEHNEAAR 65
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +LKQG VALISDAGTP ISDPG L + I VVPIPGA A +AAL ASG
Sbjct: 66 ATLLCEKLKQGLNVALISDAGTPLISDPGYRLVNAVREAGIEVVPIPGACAAIAALVASG 125
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L TD F F GF+P R ++L N+ +T IFY H+++ ++ + +FG RR
Sbjct: 126 LPTDRFIFEGFIPSKGEVRRKKLEDLKNQRRTIIFYESVHRIVNLIDLLNEIFGTERRAT 185
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSH--QPKGEITVLVEGKAICVVETPSEDQLEKELR 320
IARE+TK E TL E K + + Q KGE V+V G+ + E E Q +L
Sbjct: 186 IARELTKKFETIHTATLAELKNWINENPVQEKGEFVVIVAGQTEKLTEINEEHQ---QLL 242
Query: 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
L+ + +L AV L + + + RK +Y+LAL
Sbjct: 243 TLLLSELSLKQAVSLATKISGLPRKKLYALAL 274
>TIGR_CMR|CBU_1739 [details] [associations]
symbol:CBU_1739 "tetrapyrrole (Corrin/Porphyrin) methylase
domain protein" species:227377 "Coxiella burnetii RSA 493"
[GO:0008150 "biological_process" evidence=ND] [GO:0008168
"methyltransferase activity" evidence=ISS] HAMAP:MF_01877
InterPro:IPR000878 InterPro:IPR008189 InterPro:IPR011761
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 PROSITE:PS50975
GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 EMBL:AE016828
GenomeReviews:AE016828_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 HOGENOM:HOG000195941
KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
RefSeq:NP_820719.1 ProteinModelPortal:Q820W0 GeneID:1209650
KEGG:cbu:CBU_1739 PATRIC:17932221 ProtClustDB:CLSK914992
BioCyc:CBUR227377:GJ7S-1713-MONOMER Uniprot:Q820W0
Length = 285
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 127/272 (46%), Positives = 168/272 (61%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+ ATPIGN EDITLRA+ L+S ++I +EDTRHS KLL++Y IKTPLLS H+ NE+ R
Sbjct: 6 LYITATPIGNREDITLRAIDTLRSVDLIAAEDTRHSKKLLEHYGIKTPLLSLHEHNEAAR 65
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +LKQG VALISDAGTP ISDPG L + I VVPIPGA A +AAL ASG
Sbjct: 66 ATLLCEKLKQGLNVALISDAGTPLISDPGYRLVNAVREAGIEVVPIPGACAAIAALVASG 125
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L TD F F GF+P R ++L N+ +T IFY H+++ ++ + +FG RR
Sbjct: 126 LPTDRFIFEGFIPSKGEVRRKKLEDLKNQRRTIIFYESVHRIVNLIDLLNEIFGTERRAT 185
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSH--QPKGEITVLVEGKAICVVETPSEDQLEKELR 320
IARE+TK E TL E K + + Q KGE V+V G+ + E E Q +L
Sbjct: 186 IARELTKKFETIHTATLAELKNWINENPVQEKGEFVVIVAGQTEKLTEINEEHQ---QLL 242
Query: 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
L+ + +L AV L + + + RK +Y+LAL
Sbjct: 243 TLLLSELSLKQAVSLATKISGLPRKKLYALAL 274
>UNIPROTKB|Q74FF6 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 Pfam:PF00590
PIRSF:PIRSF005917 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 KO:K07056 OMA:EITKTWE
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 HOGENOM:HOG000195942
RefSeq:NP_951710.1 ProteinModelPortal:Q74FF6 DNASU:2685406
GeneID:2685406 KEGG:gsu:GSU0653 PATRIC:22024053
ProtClustDB:CLSK827975 BioCyc:GSUL243231:GH27-663-MONOMER
Uniprot:Q74FF6
Length = 286
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 125/275 (45%), Positives = 168/275 (61%)
Query: 81 PG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE 139
PG LY++ATPIGNLEDIT RA+R+L +++ +EDTRH+ KLL Y I PL SY N+
Sbjct: 2 PGILYIIATPIGNLEDITYRAVRILGEVDLVAAEDTRHTRKLLSRYGITKPLTSYFDHNK 61
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
S + + +L RL G+ VAL++DAGTP ISDPG +L + V E I VVP+PG SAFVAALS
Sbjct: 62 SLKGEYLLTRLHDGQSVALVTDAGTPCISDPGYQLVRDAVSEGILVVPVPGPSAFVAALS 121
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
A+GL TD F F GFLP + R E+L E + IFY P +L L + + G R
Sbjct: 122 AAGLPTDAFVFEGFLPTRGKRRLEKLANLKGEQRVVIFYEAPGRLQAALADMREVLG-DR 180
Query: 260 RCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKEL 319
V+ARE+TK+HEEF RG + E F++ KGE+ +LV TP E +L+ L
Sbjct: 181 HVVVARELTKIHEEFVRGRVSFVAEHFAAVDVKGEVVILVAPAP--APATPGEGELKDLL 238
Query: 320 RGLISAGH-NLSMAVKLVAQGTSVRRKTIYSLALR 353
R + + AVK V+ + R +Y +AL+
Sbjct: 239 RHYLRRSDISFKDAVKRVSVELDISRAQVYEMALK 273
>TIGR_CMR|GSU_0653 [details] [associations]
symbol:GSU_0653 "tetrapyrrole methylase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 Pfam:PF00590
PIRSF:PIRSF005917 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 KO:K07056 OMA:EITKTWE
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 HOGENOM:HOG000195942
RefSeq:NP_951710.1 ProteinModelPortal:Q74FF6 DNASU:2685406
GeneID:2685406 KEGG:gsu:GSU0653 PATRIC:22024053
ProtClustDB:CLSK827975 BioCyc:GSUL243231:GH27-663-MONOMER
Uniprot:Q74FF6
Length = 286
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 125/275 (45%), Positives = 168/275 (61%)
Query: 81 PG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE 139
PG LY++ATPIGNLEDIT RA+R+L +++ +EDTRH+ KLL Y I PL SY N+
Sbjct: 2 PGILYIIATPIGNLEDITYRAVRILGEVDLVAAEDTRHTRKLLSRYGITKPLTSYFDHNK 61
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
S + + +L RL G+ VAL++DAGTP ISDPG +L + V E I VVP+PG SAFVAALS
Sbjct: 62 SLKGEYLLTRLHDGQSVALVTDAGTPCISDPGYQLVRDAVSEGILVVPVPGPSAFVAALS 121
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
A+GL TD F F GFLP + R E+L E + IFY P +L L + + G R
Sbjct: 122 AAGLPTDAFVFEGFLPTRGKRRLEKLANLKGEQRVVIFYEAPGRLQAALADMREVLG-DR 180
Query: 260 RCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKEL 319
V+ARE+TK+HEEF RG + E F++ KGE+ +LV TP E +L+ L
Sbjct: 181 HVVVARELTKIHEEFVRGRVSFVAEHFAAVDVKGEVVILVAPAP--APATPGEGELKDLL 238
Query: 320 RGLISAGH-NLSMAVKLVAQGTSVRRKTIYSLALR 353
R + + AVK V+ + R +Y +AL+
Sbjct: 239 RHYLRRSDISFKDAVKRVSVELDISRAQVYEMALK 273
>UNIPROTKB|Q48EE8 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:CP000058 GenomeReviews:CP000058_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
eggNOG:COG0313 HOGENOM:HOG000195941 KO:K07056
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 RefSeq:YP_276240.1
ProteinModelPortal:Q48EE8 STRING:Q48EE8 GeneID:3555881
KEGG:psp:PSPPH_4118 PATRIC:19977701 OMA:ISGAPRN
ProtClustDB:CLSK868645 Uniprot:Q48EE8
Length = 332
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 127/283 (44%), Positives = 174/283 (61%)
Query: 81 PG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE 139
PG LY+VATPIGNL+D+++RAL+VL+ +I +EDTRHS +L+Q++ I TPL + H+ NE
Sbjct: 54 PGSLYVVATPIGNLDDMSVRALKVLREVALIAAEDTRHSARLMQHFGISTPLAACHEHNE 113
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
+ RL G+ VALISDAGTP ISDPG L + +PVVP+PGA A +AALS
Sbjct: 114 RDEGSRFITRLLAGDDVALISDAGTPLISDPGYHLVRQARAVGVPVVPVPGACALIAALS 173
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
A+GL +D F F GFLP A R +L E +T I+Y PH++L+ L++ +FG R
Sbjct: 174 AAGLPSDRFIFEGFLPAKAAGRKAKLERVKEEPRTLIYYEAPHRILECLQDMEQVFGADR 233
Query: 260 RCVIAREITKMHEEFWRGTLGEAKEAF---SSHQPKGEITVLVEGKAICVVETPSEDQ-- 314
+ ++AREITK E LGE + AF S+Q +GE VL+ G TP ED+
Sbjct: 234 QALLAREITKTFETLKGLPLGELR-AFVEADSNQQRGECVVLIAGW------TPPEDEDV 286
Query: 315 LEKELR---GLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354
+ +E R L+ A L A L A+ T VR+ +Y +AL K
Sbjct: 287 IGEEARRILDLLLAEMPLKRAAALAAEITGVRKNLLYQVALEK 329
>TIGR_CMR|DET_0386 [details] [associations]
symbol:DET_0386 "tetrapyrrole methylase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
eggNOG:COG0313 KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18
TIGRFAMs:TIGR00096 HOGENOM:HOG000195942 RefSeq:YP_181131.1
ProteinModelPortal:Q3Z9G8 STRING:Q3Z9G8 GeneID:3230285
KEGG:det:DET0386 PATRIC:21607841 ProtClustDB:CLSK837512
BioCyc:DETH243164:GJNF-386-MONOMER Uniprot:Q3Z9G8
Length = 274
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 118/271 (43%), Positives = 165/271 (60%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNLEDITLRALRVL +I +EDTR + KLL +NIKTPL SY + N +
Sbjct: 3 LYVVATPIGNLEDITLRALRVLSEVKLIAAEDTRRTRKLLSAHNIKTPLTSYFEHNRLSK 62
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+L L +G+ VAL+SDAG PGISDPG EL K + I VVP+PGASA + A++ SG
Sbjct: 63 LDYILEVLGEGD-VALVSDAGMPGISDPGYELIKAAHEHGIKVVPVPGASAVITAVAVSG 121
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L F+++GFLP+ R + L +A+ + + PH+L L + + G R
Sbjct: 122 LDCASFSYLGFLPRQKTERRKALSEAASLGASIVILEAPHRLQGCLLDIKDVLG-DREIA 180
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGL 322
+ RE+TK++EE +RG++ +A F QP+GE ++VEG + V + D + KEL L
Sbjct: 181 VCRELTKIYEEIFRGSISQAISHFD--QPRGEFVLVVEGCKVPVSQPELTDDIIKELGML 238
Query: 323 ISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353
G AV LV+Q + + +K IY L+
Sbjct: 239 KKQGKPAKEAVALVSQKSGLPKKEIYRAWLK 269
>UNIPROTKB|Q4K6I3 [details] [associations]
symbol:yraL "Ribosomal RNA small subunit methyltransferase
I" species:220664 "Pseudomonas protegens Pf-5" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:CP000076 Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 eggNOG:COG0313
HOGENOM:HOG000195941 KO:K07056 PANTHER:PTHR21091:SF18
TIGRFAMs:TIGR00096 ProtClustDB:CLSK868645 RefSeq:YP_262150.2
GeneID:3479481 KEGG:pfl:PFL_5071 PATRIC:19879615
BioCyc:PFLU220664:GIX8-5112-MONOMER Uniprot:Q4K6I3
Length = 290
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 123/288 (42%), Positives = 168/288 (58%)
Query: 77 GPLEPG---LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS 133
GPL LY+VATPIGNL+DI+ RAL++L+ ++I +EDTRHS +L+Q++ I TPL +
Sbjct: 5 GPLNSAAGSLYVVATPIGNLDDISARALKLLREVSLIAAEDTRHSQRLMQHFGISTPLAA 64
Query: 134 YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193
H+ NE + RL G+ VALISDAGTP ISDPG L + I VVP+PGA A
Sbjct: 65 CHEHNERDEGSRFITRLLAGDNVALISDAGTPLISDPGYHLVRQARAAGINVVPVPGACA 124
Query: 194 FVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSL 253
+AALSA+GL +D F F GFLP A R RL E +T IFY PH++L+ L++
Sbjct: 125 LIAALSAAGLPSDRFIFEGFLPAKAVGRRARLGAVKEEPRTLIFYEAPHRILECLQDMES 184
Query: 254 LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEG-KAICVVETP 310
+FG R ++ARE+TK E L E ++ S +Q +GE VLV G A E
Sbjct: 185 VFGGERPALLARELTKTFETLKGLPLSELRQFVESDSNQQRGECVVLVAGWTAPESDEAI 244
Query: 311 SEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQ 358
S + + + L+ L A L A+ T R+ +Y +AL K +Q
Sbjct: 245 SSESMR--ILDLLLKEMPLKRAAALAAEITGERKNVLYQVALDKQKEQ 290
>UNIPROTKB|P67087 [details] [associations]
symbol:rsmI "16S rRNA 2'-O-ribose C1402 methyltransferase"
species:83333 "Escherichia coli K-12" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070677 "rRNA (cytosine-2'-O-)-methyltransferase
activity" evidence=IDA;IMP] [GO:0000453 "enzyme-directed rRNA
2'-O-methylation" evidence=IMP] HAMAP:MF_01877 InterPro:IPR000878
InterPro:IPR008189 InterPro:IPR014776 InterPro:IPR014777
InterPro:IPR018063 Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
PIR:F65104 RefSeq:NP_417615.1 RefSeq:YP_491333.1
ProteinModelPortal:P67087 SMR:P67087 IntAct:P67087
MINT:MINT-1312386 PRIDE:P67087 EnsemblBacteria:EBESCT00000000355
EnsemblBacteria:EBESCT00000015202 GeneID:12932599 GeneID:947664
KEGG:ecj:Y75_p3068 KEGG:eco:b3146 PATRIC:32121710 EchoBASE:EB2630
EcoGene:EG12777 eggNOG:COG0313 HOGENOM:HOG000195941 KO:K07056
OMA:EITKTWE ProtClustDB:PRK14994 BioCyc:EcoCyc:G7641-MONOMER
BioCyc:ECOL316407:JW3115-MONOMER BioCyc:MetaCyc:G7641-MONOMER
Genevestigator:P67087 PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
Uniprot:P67087
Length = 286
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 116/276 (42%), Positives = 167/276 (60%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RAL VL++ ++I +EDTRH+G LLQ++ I L + H NE Q+
Sbjct: 14 LYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQK 73
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+T+L +L++G+ +AL+SDAGTP I+DPG L + C + I VVP+PG A + ALSA+G
Sbjct: 74 AETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAG 133
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L +D F + GFLP ++ R + L E +T IFY H+LL LE+ + G SR V
Sbjct: 134 LPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVV 193
Query: 263 IAREITKMHEEFWRGTLGE--AKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELR 320
+ARE+TK E +GE A ++ KGE+ ++VEG + P+ D L + L
Sbjct: 194 LARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPA-DAL-RTL- 250
Query: 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFG 356
L+ A L A L A+ V++ +Y AL + G
Sbjct: 251 ALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG 286
>UNIPROTKB|Q60CC2 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:AE017282 GenomeReviews:AE017282_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
HOGENOM:HOG000195941 KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18
TIGRFAMs:TIGR00096 RefSeq:YP_112723.1 ProteinModelPortal:Q60CC2
GeneID:3104548 KEGG:mca:MCA0186 PATRIC:22604105 Uniprot:Q60CC2
Length = 291
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 120/285 (42%), Positives = 167/285 (58%)
Query: 72 QSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL 131
Q+S+R + LYLVATPIGNL DI+ RA+ +LK+ ++I +EDTRHS LL Y I+ PL
Sbjct: 2 QASER--INGVLYLVATPIGNLGDISFRAVEILKTVDLIAAEDTRHSRPLLDRYGIERPL 59
Query: 132 LSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191
+ H+ NE Q +++RLK G+ VALISDAGTP I+DPG L I V P+PGA
Sbjct: 60 FALHEHNEQQASDRLMDRLKNGQRVALISDAGTPLINDPGFPLVSRARAAGIIVTPVPGA 119
Query: 192 SAFVAALSASGLATDEFTFVGFLPKHARSRTERL-MLSANEVKTQIFYVPPHKLLQFLEE 250
A VAALSASGL+T F F GF P+ +R R L A+E +T +FY H++ + +
Sbjct: 120 CALVAALSASGLSTARFAFEGFAPRTGAARRRRFESLVADE-RTLVFYEASHRIRDCIAD 178
Query: 251 TSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQP---KGEITVLVEGKAICVV 307
+ +F RR V+ARE+TK+HE F G A P KGE V++EG
Sbjct: 179 VATVFPGDRRVVVARELTKLHESFL-GAPAADMPALMDQAPENSKGEFVVVIEGAKPEPT 237
Query: 308 ETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
+T + + L+ L+ ++ A L A+ T RR+ +Y +AL
Sbjct: 238 QTGPSVEAVRVLKLLLEEC-SVKSATGLAARITGARREDLYRVAL 281
>UNIPROTKB|Q9KUD9 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008168 GO:GO:0006364
Gene3D:3.30.950.10 Gene3D:3.40.1010.10 SUPFAM:SSF53790
eggNOG:COG0313 KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18
TIGRFAMs:TIGR00096 PIR:C82306 RefSeq:NP_230233.1
ProteinModelPortal:Q9KUD9 DNASU:2615370 GeneID:2615370
KEGG:vch:VC0582 PATRIC:20080278 ProtClustDB:CLSK874019
Uniprot:Q9KUD9
Length = 288
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 117/282 (41%), Positives = 162/282 (57%)
Query: 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES 140
P LY+V TPIGNL DIT RAL VL S ++I EDTRH+GKLL ++NI T + H NE
Sbjct: 12 PILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQ 71
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
Q+ Q ++++L G +AL+SDAGTP ISDPG L C + VVP+PG A + ALSA
Sbjct: 72 QKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSA 131
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRR 260
SGL +D F+F GFLP +++R ++L+ A +T IFY PH++ + L++ + G R
Sbjct: 132 SGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGERE 191
Query: 261 CVIAREITKMHEEFWRGTLGEAKE--AFSSHQPKGEITVLVEGKAICVVETPSEDQLEKE 318
V+ARE+TK E L E A ++ KGE+ +LV G E QL E
Sbjct: 192 VVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHG-----YRDAGEQQLPDE 246
Query: 319 -LRGLISAGHNLSM--AVKLVAQGTSVRRKTIYSLALRKFGK 357
LR L L + A LVA+ +++ +Y L G+
Sbjct: 247 ALRTLTILTKELPLKKAAALVAEIHQLKKNALYKWGLENLGE 288
>TIGR_CMR|VC_0582 [details] [associations]
symbol:VC_0582 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01877
InterPro:IPR000878 InterPro:IPR008189 InterPro:IPR014776
InterPro:IPR014777 InterPro:IPR018063 Pfam:PF00590
PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008168 GO:GO:0006364
Gene3D:3.30.950.10 Gene3D:3.40.1010.10 SUPFAM:SSF53790
eggNOG:COG0313 KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18
TIGRFAMs:TIGR00096 PIR:C82306 RefSeq:NP_230233.1
ProteinModelPortal:Q9KUD9 DNASU:2615370 GeneID:2615370
KEGG:vch:VC0582 PATRIC:20080278 ProtClustDB:CLSK874019
Uniprot:Q9KUD9
Length = 288
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 117/282 (41%), Positives = 162/282 (57%)
Query: 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES 140
P LY+V TPIGNL DIT RAL VL S ++I EDTRH+GKLL ++NI T + H NE
Sbjct: 12 PILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQ 71
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
Q+ Q ++++L G +AL+SDAGTP ISDPG L C + VVP+PG A + ALSA
Sbjct: 72 QKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSA 131
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRR 260
SGL +D F+F GFLP +++R ++L+ A +T IFY PH++ + L++ + G R
Sbjct: 132 SGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGERE 191
Query: 261 CVIAREITKMHEEFWRGTLGEAKE--AFSSHQPKGEITVLVEGKAICVVETPSEDQLEKE 318
V+ARE+TK E L E A ++ KGE+ +LV G E QL E
Sbjct: 192 VVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHG-----YRDAGEQQLPDE 246
Query: 319 -LRGLISAGHNLSM--AVKLVAQGTSVRRKTIYSLALRKFGK 357
LR L L + A LVA+ +++ +Y L G+
Sbjct: 247 ALRTLTILTKELPLKKAAALVAEIHQLKKNALYKWGLENLGE 288
>TIGR_CMR|BA_0033 [details] [associations]
symbol:BA_0033 "tetrapyrrole methylase family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0008152
"metabolic process" evidence=ISS] [GO:0008168 "methyltransferase
activity" evidence=ISS] HAMAP:MF_01877 InterPro:IPR000878
InterPro:IPR008189 InterPro:IPR014776 InterPro:IPR014777
InterPro:IPR018063 Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 KO:K07056 OMA:EITKTWE
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 HOGENOM:HOG000195942
RefSeq:NP_842603.1 RefSeq:YP_016638.1 RefSeq:YP_026322.1
ProteinModelPortal:Q81W05 IntAct:Q81W05 DNASU:1088327
EnsemblBacteria:EBBACT00000013317 EnsemblBacteria:EBBACT00000015210
EnsemblBacteria:EBBACT00000022586 GeneID:1088327 GeneID:2816276
GeneID:2848932 KEGG:ban:BA_0033 KEGG:bar:GBAA_0033 KEGG:bat:BAS0035
ProtClustDB:CLSK915691 BioCyc:BANT260799:GJAJ-42-MONOMER
BioCyc:BANT261594:GJ7F-43-MONOMER Uniprot:Q81W05
Length = 291
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 114/280 (40%), Positives = 167/280 (59%)
Query: 80 EPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN 138
E G LYLV TPIGNLED+T RA+R+LK A++I +EDTR + KL Y+ I+TP++SYH+ N
Sbjct: 11 EKGVLYLVPTPIGNLEDMTFRAIRILKEADLIAAEDTRQTKKLCNYFEIETPVMSYHEHN 70
Query: 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198
+ + +L +L +G+ VAL+SDAG P ISDPG ++ V E+ V+P+PGA+A + AL
Sbjct: 71 KEVSGKKILEKLDEGKTVALVSDAGMPCISDPGYDIVVEAVAEQYHVIPLPGANAALTAL 130
Query: 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258
ASGL T +F F GFL ++ + R L T +FY PH+L L + G +
Sbjct: 131 IASGLQTKQFYFYGFLQRNKKERKMELEKLRYVQTTMMFYEAPHRLDDTLISMQEVLG-N 189
Query: 259 RRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPS-EDQ--- 314
R V+ RE+TK EEF RGT+ EA E ++ +GE +LV G E P+ E+Q
Sbjct: 190 REIVLCRELTKKFEEFIRGTVEEAIEWTKQNEVRGEFCILVAGST----EEPAPEEQWWE 245
Query: 315 ---LEKELRGLISA-GHNLSMAVKLVAQGTSVRRKTIYSL 350
+ + I+ G N A+K VA+ + ++ +Y +
Sbjct: 246 SISVYNHIEHYINEKGMNSKEAIKTVAKDRDLSKRDVYQI 285
>UNIPROTKB|Q0C452 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01877 InterPro:IPR000878
InterPro:IPR008189 InterPro:IPR014776 InterPro:IPR014777
InterPro:IPR018063 Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296
GO:GO:0005737 EMBL:CP000158 GenomeReviews:CP000158_GR
Gene3D:3.30.950.10 Gene3D:3.40.1010.10 SUPFAM:SSF53790
GO:GO:0000453 GO:GO:0070677 eggNOG:COG0313 HOGENOM:HOG000195941
KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
RefSeq:YP_759491.1 ProteinModelPortal:Q0C452 STRING:Q0C452
GeneID:4287365 KEGG:hne:HNE_0763 PATRIC:32214334
BioCyc:HNEP228405:GI69-805-MONOMER Uniprot:Q0C452
Length = 291
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 114/276 (41%), Positives = 160/276 (57%)
Query: 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN 138
+ PGLY+V+TPIGNL DITLRAL +L +A+ +L+EDTR +GKL+ Y IK L YH N
Sbjct: 13 VSPGLYVVSTPIGNLRDITLRALDILSAADEVLAEDTRVAGKLMSAYGIKARLSPYHDHN 72
Query: 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198
++R +L+RL G +ALISDAGTP ISDPG +L ++ V P+PGASA +A L
Sbjct: 73 GAERRPQILSRLADGGRIALISDAGTPLISDPGWKLVHDALEAGHKVYPVPGASALLAGL 132
Query: 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258
ASGL +D F F GFLP + +R L + T +FY +L + L + + + G
Sbjct: 133 VASGLPSDRFMFAGFLPPKSGARKAALETLKHVPGTLVFYESGPRLAESLADLAAVLGGG 192
Query: 259 RRCVIAREITKMHEEFWRGTLGEAKEAF-SSHQPKGEITVLVEGKAICVVETPSEDQLEK 317
R +ARE+TK+ EE RGTL E + ++ P+GEI +L G TP + L+
Sbjct: 193 RTAAVARELTKLFEETRRGTLTSLAEHYQTAGPPRGEIVILT-GPPEEKTSTPGD--LDA 249
Query: 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353
LR + A VA+ + R+ +Y AL+
Sbjct: 250 ALRDALLTMPTKDAATS-VAEALGLPRRDVYQRALQ 284
>UNIPROTKB|Q47VU3 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
eggNOG:COG0313 HOGENOM:HOG000195941 KO:K07056 OMA:EITKTWE
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 RefSeq:YP_271079.1
ProteinModelPortal:Q47VU3 STRING:Q47VU3 GeneID:3519065
KEGG:cps:CPS_4431 PATRIC:21471701
BioCyc:CPSY167879:GI48-4440-MONOMER Uniprot:Q47VU3
Length = 282
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 114/279 (40%), Positives = 163/279 (58%)
Query: 79 LEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKF 137
L P LY+VATPIGNL DI+ RA+ +L +VI EDTRH+GKLL ++IK +S H
Sbjct: 6 LTPATLYIVATPIGNLSDISQRAIDILTQVDVIACEDTRHTGKLLSAFSIKNKTMSLHDH 65
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
NE QR+ V + L++G+ +AL+SDAGTP ISDPG L + C + V PIPGA A +AA
Sbjct: 66 NERQRQDQVASMLQEGKTIALVSDAGTPLISDPGFHLVRHCRSLGLQVSPIPGACAAIAA 125
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGY 257
LS +GL TD F+F GFLP + +R L A+E +T +FY P + + +++ G
Sbjct: 126 LSVAGLPTDRFSFEGFLPSKSGARQATLTALADESRTMVFYDAPRRAIDTVQDIVTTLGG 185
Query: 258 SRRCVIAREITKMHEEFWRGTLGEAKEAF---SSHQPKGEITVLVEG-KAICVVETPSED 313
R VIARE+TK E T E A+ ++Q KGE+ +++EG KA E
Sbjct: 186 DRYIVIARELTKTFETIHSDT-AENLLAWLEQDANQLKGEMVLIIEGYKA---TENEISA 241
Query: 314 QLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
++ L+ L+ A A + A+ V++ +Y +AL
Sbjct: 242 EVINTLK-LLLAEMKPKKACAIAAEIYGVKKNALYEVAL 279
>TIGR_CMR|CPS_4431 [details] [associations]
symbol:CPS_4431 "conserved hypothetical protein TIGR00096"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
eggNOG:COG0313 HOGENOM:HOG000195941 KO:K07056 OMA:EITKTWE
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 RefSeq:YP_271079.1
ProteinModelPortal:Q47VU3 STRING:Q47VU3 GeneID:3519065
KEGG:cps:CPS_4431 PATRIC:21471701
BioCyc:CPSY167879:GI48-4440-MONOMER Uniprot:Q47VU3
Length = 282
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 114/279 (40%), Positives = 163/279 (58%)
Query: 79 LEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKF 137
L P LY+VATPIGNL DI+ RA+ +L +VI EDTRH+GKLL ++IK +S H
Sbjct: 6 LTPATLYIVATPIGNLSDISQRAIDILTQVDVIACEDTRHTGKLLSAFSIKNKTMSLHDH 65
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
NE QR+ V + L++G+ +AL+SDAGTP ISDPG L + C + V PIPGA A +AA
Sbjct: 66 NERQRQDQVASMLQEGKTIALVSDAGTPLISDPGFHLVRHCRSLGLQVSPIPGACAAIAA 125
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGY 257
LS +GL TD F+F GFLP + +R L A+E +T +FY P + + +++ G
Sbjct: 126 LSVAGLPTDRFSFEGFLPSKSGARQATLTALADESRTMVFYDAPRRAIDTVQDIVTTLGG 185
Query: 258 SRRCVIAREITKMHEEFWRGTLGEAKEAF---SSHQPKGEITVLVEG-KAICVVETPSED 313
R VIARE+TK E T E A+ ++Q KGE+ +++EG KA E
Sbjct: 186 DRYIVIARELTKTFETIHSDT-AENLLAWLEQDANQLKGEMVLIIEGYKA---TENEISA 241
Query: 314 QLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
++ L+ L+ A A + A+ V++ +Y +AL
Sbjct: 242 EVINTLK-LLLAEMKPKKACAIAAEIYGVKKNALYEVAL 279
>UNIPROTKB|Q8EK05 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
HOGENOM:HOG000195941 KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18
TIGRFAMs:TIGR00096 RefSeq:NP_715941.1 ProteinModelPortal:Q8EK05
GeneID:1168183 KEGG:son:SO_0301 PATRIC:23520309
ProtClustDB:CLSK905684 Uniprot:Q8EK05
Length = 281
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 106/272 (38%), Positives = 152/272 (55%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL D++ RA+ VL +I EDTRHSGKLL ++ I T ++ H NE R
Sbjct: 7 LYIVPTPIGNLGDMSPRAIDVLSQVALIACEDTRHSGKLLSHFGISTKTIALHDHNERAR 66
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
Q ++++L G+ +ALISDAGTP ISDPG L V+P+PG A + ALSASG
Sbjct: 67 AQWIVDQLAAGQSIALISDAGTPLISDPGYHLVSHVRQSGFKVIPLPGPCAAITALSASG 126
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L +D F+F GFLP ++R ++L+ + +T IFY PH++ L + + G R+ V
Sbjct: 127 LPSDRFSFEGFLPSKEKARADKLLELKEDPRTLIFYESPHRIEHSLTTMAQVLGDDRQVV 186
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEGKAICVVETPSEDQLEKELR 320
+ARE+TK E F G + E SS +Q KGEI ++V G + L+
Sbjct: 187 MAREVTKTFETFLSGPVAEVLATVSSDLNQQKGEIVLMVHGHRAAEDDEAIPTVAINTLK 246
Query: 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
L+ L A + AQ +++ +Y L
Sbjct: 247 -LLCEELPLKKAAAIAAQIHGLKKNALYKFGL 277
>TIGR_CMR|SO_0301 [details] [associations]
symbol:SO_0301 "conserved hypothetical protein TIGR00096"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
HOGENOM:HOG000195941 KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18
TIGRFAMs:TIGR00096 RefSeq:NP_715941.1 ProteinModelPortal:Q8EK05
GeneID:1168183 KEGG:son:SO_0301 PATRIC:23520309
ProtClustDB:CLSK905684 Uniprot:Q8EK05
Length = 281
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 106/272 (38%), Positives = 152/272 (55%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL D++ RA+ VL +I EDTRHSGKLL ++ I T ++ H NE R
Sbjct: 7 LYIVPTPIGNLGDMSPRAIDVLSQVALIACEDTRHSGKLLSHFGISTKTIALHDHNERAR 66
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
Q ++++L G+ +ALISDAGTP ISDPG L V+P+PG A + ALSASG
Sbjct: 67 AQWIVDQLAAGQSIALISDAGTPLISDPGYHLVSHVRQSGFKVIPLPGPCAAITALSASG 126
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L +D F+F GFLP ++R ++L+ + +T IFY PH++ L + + G R+ V
Sbjct: 127 LPSDRFSFEGFLPSKEKARADKLLELKEDPRTLIFYESPHRIEHSLTTMAQVLGDDRQVV 186
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEGKAICVVETPSEDQLEKELR 320
+ARE+TK E F G + E SS +Q KGEI ++V G + L+
Sbjct: 187 MAREVTKTFETFLSGPVAEVLATVSSDLNQQKGEIVLMVHGHRAAEDDEAIPTVAINTLK 246
Query: 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352
L+ L A + AQ +++ +Y L
Sbjct: 247 -LLCEELPLKKAAAIAAQIHGLKKNALYKFGL 277
>UNIPROTKB|Q5LWE3 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 Pfam:PF00590
PIRSF:PIRSF005917 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 HOGENOM:HOG000195941
KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
RefSeq:YP_165662.1 ProteinModelPortal:Q5LWE3 DNASU:3195371
GeneID:3195371 KEGG:sil:SPO0399 PATRIC:23374059
ProtClustDB:CLSK767220 Uniprot:Q5LWE3
Length = 285
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 108/282 (38%), Positives = 151/282 (53%)
Query: 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP---LLSYH 135
L GLY V TPIG+ DITLRAL VL SA VI +EDTR LL + + +L+YH
Sbjct: 8 LPAGLYFVGTPIGSARDITLRALDVLASAEVIAAEDTRSLRHLLDIHGVPLDGRRVLAYH 67
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
+ + + +L L +G+ VA S+AG P I+DPG EL++ + V PG SA +
Sbjct: 68 DHSGAGAQARLLEALAEGKSVAYASEAGMPLIADPGFELSRAAAEAGHMVTCAPGPSAVL 127
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
AL+ +GL TD F F GFLP A +R RL T +FY P +L L + + +
Sbjct: 128 TALTLAGLPTDAFFFAGFLPNAAAARKTRLETLRGVPGTLVFYESPKRLAASLRDMAEVL 187
Query: 256 GYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQL 315
G R + RE+TK EE R TL EA + KGE+ +LV+ V+ + +
Sbjct: 188 GGERPAALCRELTKKFEETRRDTLAGLAEALAEAPVKGEVVLLVDRARSGPVK---DSDI 244
Query: 316 EKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGK 357
E++L + H++ A LVA+ V R+ +Y LAL K GK
Sbjct: 245 EQDLLAALET-HSVRDAADLVARMHDVPRRPVYQLAL-KLGK 284
>TIGR_CMR|SPO_0399 [details] [associations]
symbol:SPO_0399 "tetrapyrrole methylase family protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 Pfam:PF00590
PIRSF:PIRSF005917 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677 HOGENOM:HOG000195941
KO:K07056 OMA:EITKTWE PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096
RefSeq:YP_165662.1 ProteinModelPortal:Q5LWE3 DNASU:3195371
GeneID:3195371 KEGG:sil:SPO0399 PATRIC:23374059
ProtClustDB:CLSK767220 Uniprot:Q5LWE3
Length = 285
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 108/282 (38%), Positives = 151/282 (53%)
Query: 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP---LLSYH 135
L GLY V TPIG+ DITLRAL VL SA VI +EDTR LL + + +L+YH
Sbjct: 8 LPAGLYFVGTPIGSARDITLRALDVLASAEVIAAEDTRSLRHLLDIHGVPLDGRRVLAYH 67
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
+ + + +L L +G+ VA S+AG P I+DPG EL++ + V PG SA +
Sbjct: 68 DHSGAGAQARLLEALAEGKSVAYASEAGMPLIADPGFELSRAAAEAGHMVTCAPGPSAVL 127
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
AL+ +GL TD F F GFLP A +R RL T +FY P +L L + + +
Sbjct: 128 TALTLAGLPTDAFFFAGFLPNAAAARKTRLETLRGVPGTLVFYESPKRLAASLRDMAEVL 187
Query: 256 GYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQL 315
G R + RE+TK EE R TL EA + KGE+ +LV+ V+ + +
Sbjct: 188 GGERPAALCRELTKKFEETRRDTLAGLAEALAEAPVKGEVVLLVDRARSGPVK---DSDI 244
Query: 316 EKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGK 357
E++L + H++ A LVA+ V R+ +Y LAL K GK
Sbjct: 245 EQDLLAALET-HSVRDAADLVARMHDVPRRPVYQLAL-KLGK 284
>UNIPROTKB|P0A640 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] HAMAP:MF_01877 InterPro:IPR000878
InterPro:IPR008189 InterPro:IPR014776 InterPro:IPR014777
InterPro:IPR018063 Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296
GO:GO:0005886 GO:GO:0005737 EMBL:BX842575 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0008168
GO:GO:0006364 Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 eggNOG:COG0313 KO:K07056 OMA:EITKTWE
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 PIR:F70602
RefSeq:NP_215519.1 RefSeq:NP_335468.1 RefSeq:YP_006514364.1
ProteinModelPortal:P0A640 SMR:P0A640 PRIDE:P0A640
EnsemblBacteria:EBMYCT00000001855 EnsemblBacteria:EBMYCT00000069771
GeneID:13319565 GeneID:887935 GeneID:925167 KEGG:mtc:MT1032
KEGG:mtu:Rv1003 KEGG:mtv:RVBD_1003 PATRIC:18124014
TubercuList:Rv1003 HOGENOM:HOG000195940 ProtClustDB:CLSK790887
Uniprot:P0A640
Length = 285
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 96/274 (35%), Positives = 141/274 (51%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP--LLSYHKFNES 140
L L ATP+G D + R L +A+V+ +EDTR KL + +I+ ++S E+
Sbjct: 6 LLLGATPLGQPSDASPRLAAALATADVVAAEDTRRVRKLAKALDIRIGGRVVSLFDRVEA 65
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
R +L+ + G V ++SDAGTP ISDPG L C+D + V +PG SA AL
Sbjct: 66 LRVTALLDAINNGATVLVVSDAGTPVISDPGYRLVAACIDAGVSVTCLPGPSAVTTALVM 125
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRR 260
SGL ++F F GF P+ +R L A E +T +F+ P +L L + G +R
Sbjct: 126 SGLPAEKFCFEGFAPRKGAARRAWLAELAEERRTCVFFESPRRLAACLNDAVEQLGGARP 185
Query: 261 CVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELR 320
I RE+TK+HEE RG+L E +++ GEITV+V G A E S L ++
Sbjct: 186 AAICRELTKVHEEVVRGSLDELA-IWAAGGVLGEITVVVAGAAPHA-ELSS---LIAQVE 240
Query: 321 GLISAGHNLSMAVKLVAQG-TSVRRKTIYSLALR 353
++AG + A VA VR + +Y L+
Sbjct: 241 EFVAAGIRVKDACSEVAAAHPGVRTRQLYDAVLQ 274
>UNIPROTKB|Q5HX11 [details] [associations]
symbol:rsmI "Ribosomal RNA small subunit methyltransferase
I" species:195099 "Campylobacter jejuni RM1221" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
eggNOG:COG0313 HOGENOM:HOG000195941 KO:K07056
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 RefSeq:YP_178174.1
ProteinModelPortal:Q5HX11 STRING:Q5HX11 GeneID:3230913
KEGG:cjr:CJE0150 PATRIC:20042007 OMA:GREMTKI
ProtClustDB:CLSK2767695 BioCyc:CJEJ195099:GJC0-154-MONOMER
Uniprot:Q5HX11
Length = 274
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 74/227 (32%), Positives = 116/227 (51%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-------TPLLSYH 135
LY + TPIGNL DI+ RAL +LK+ +++ EDTR S L+ N K + ++ H
Sbjct: 2 LYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLLNTKFHTDIHISKFIALH 61
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
NE + ++ ++ + VA +SDAG PGISDPG L + + I +PGA+A +
Sbjct: 62 SHNEKEVLASIDLKIFEKN-VAYLSDAGMPGISDPGKALVEFAQENNITYEILPGANAAL 120
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
AL +S EF F+GFL + R + + N I Y P ++L +E+ +L
Sbjct: 121 VALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPSIIYESPKRILSLVEQIMILD 180
Query: 256 GYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302
R + +EI+K E+ ++G E E GE V+++ K
Sbjct: 181 S-QREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGEWVVVLQSK 226
>TIGR_CMR|CJE_0150 [details] [associations]
symbol:CJE_0150 "tetrapyrrole methylase family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01877 InterPro:IPR000878 InterPro:IPR008189
InterPro:IPR014776 InterPro:IPR014777 InterPro:IPR018063
Pfam:PF00590 PIRSF:PIRSF005917 PROSITE:PS01296 GO:GO:0005737
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:3.30.950.10
Gene3D:3.40.1010.10 SUPFAM:SSF53790 GO:GO:0000453 GO:GO:0070677
eggNOG:COG0313 HOGENOM:HOG000195941 KO:K07056
PANTHER:PTHR21091:SF18 TIGRFAMs:TIGR00096 RefSeq:YP_178174.1
ProteinModelPortal:Q5HX11 STRING:Q5HX11 GeneID:3230913
KEGG:cjr:CJE0150 PATRIC:20042007 OMA:GREMTKI
ProtClustDB:CLSK2767695 BioCyc:CJEJ195099:GJC0-154-MONOMER
Uniprot:Q5HX11
Length = 274
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 74/227 (32%), Positives = 116/227 (51%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-------TPLLSYH 135
LY + TPIGNL DI+ RAL +LK+ +++ EDTR S L+ N K + ++ H
Sbjct: 2 LYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLLNTKFHTDIHISKFIALH 61
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
NE + ++ ++ + VA +SDAG PGISDPG L + + I +PGA+A +
Sbjct: 62 SHNEKEVLASIDLKIFEKN-VAYLSDAGMPGISDPGKALVEFAQENNITYEILPGANAAL 120
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
AL +S EF F+GFL + R + + N I Y P ++L +E+ +L
Sbjct: 121 VALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPSIIYESPKRILSLVEQIMILD 180
Query: 256 GYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302
R + +EI+K E+ ++G E E GE V+++ K
Sbjct: 181 S-QREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGEWVVVLQSK 226
>TAIR|locus:2164506 [details] [associations]
symbol:UPM1 "AT5G40850" species:3702 "Arabidopsis
thaliana" [GO:0004851 "uroporphyrin-III C-methyltransferase
activity" evidence=ISS;IDA] [GO:0006779 "porphyrin-containing
compound biosynthetic process" evidence=IEA;ISS] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0043115 "precorrin-2 dehydrogenase activity" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0006567
"threonine catabolic process" evidence=RCA] [GO:0019354 "siroheme
biosynthetic process" evidence=IDA] InterPro:IPR000878
InterPro:IPR003043 InterPro:IPR006366 InterPro:IPR014776
InterPro:IPR014777 Pfam:PF00590 PROSITE:PS00839 PROSITE:PS00840
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB011477
GO:GO:0019354 GO:GO:0043115 Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 eggNOG:COG0007 GO:GO:0004851 TIGRFAMs:TIGR01469
HOGENOM:HOG000290519 UniGene:At.20285 EMBL:L47479 EMBL:AY058093
EMBL:AF462833 EMBL:AY079029 EMBL:AY142030 IPI:IPI00524626
RefSeq:NP_198901.1 HSSP:P25924 ProteinModelPortal:Q42606 SMR:Q42606
STRING:Q42606 PaxDb:Q42606 PRIDE:Q42606 EnsemblPlants:AT5G40850.1
GeneID:834085 KEGG:ath:AT5G40850 TAIR:At5g40850 InParanoid:Q42606
OMA:TGHEAED PhylomeDB:Q42606 ProtClustDB:PLN02625
Genevestigator:Q42606 InterPro:IPR012383 PIRSF:PIRSF036478
Uniprot:Q42606
Length = 369
Score = 118 (46.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 51/167 (30%), Positives = 75/167 (44%)
Query: 75 KRGPLEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL- 132
K G PG +YLV T G+ E +TL+A+RV++SA+++L D S +L+ LL
Sbjct: 108 KGGDCGPGDVYLVGTGPGDPELLTLKAVRVIQSADLLLY-DRLVSNDVLELVAPDARLLY 166
Query: 133 -----SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP 187
YH + + + +LN + G V + G P + G E + I V
Sbjct: 167 VGKTAGYHSRTQEEIHELLLNFAEAGATVVRLK-GGDPLVFGRGGEEMDFLQQQGIRVQV 225
Query: 188 IPG---ASAFVAALSASGLATDEFTFVGFLPKHARSR-TERLMLSAN 230
IPG AS A L T V FL H+R T+ L ++ N
Sbjct: 226 IPGITAASGIAAELGIPLTHRGVATSVRFLTGHSRKGGTDPLFVAEN 272
Score = 42 (19.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 1 MRLVQRLPLMANSLATTGLSKTS 23
M LVQR+P+ ++S+ ++T+
Sbjct: 1 MALVQRIPISSSSIRNWQQARTN 23
>TIGR_CMR|BA_1445 [details] [associations]
symbol:BA_1445 "uroporphyrin-III C-methyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0004851
"uroporphyrin-III C-methyltransferase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR000878 InterPro:IPR003043
InterPro:IPR006366 InterPro:IPR014776 InterPro:IPR014777
Pfam:PF00590 PROSITE:PS00839 PROSITE:PS00840 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006779
GO:GO:0043115 Gene3D:3.30.950.10 Gene3D:3.40.1010.10
SUPFAM:SSF53790 GO:GO:0004851 TIGRFAMs:TIGR01469
HOGENOM:HOG000290519 HSSP:P25924 OMA:TGHEAED KO:K02303
ProtClustDB:PRK06136 RefSeq:NP_843901.1 RefSeq:YP_018069.1
RefSeq:YP_027604.1 ProteinModelPortal:Q81T44 DNASU:1084656
EnsemblBacteria:EBBACT00000012595 EnsemblBacteria:EBBACT00000014470
EnsemblBacteria:EBBACT00000023075 GeneID:1084656 GeneID:2819554
GeneID:2852907 KEGG:ban:BA_1445 KEGG:bar:GBAA_1445 KEGG:bat:BAS1335
BioCyc:BANT260799:GJAJ-1409-MONOMER
BioCyc:BANT261594:GJ7F-1473-MONOMER Uniprot:Q81T44
Length = 258
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 58/238 (24%), Positives = 105/238 (44%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHK 136
+Y+V G+ + IT++ L+ ++ A+VIL D + +LL Y + L+ +YH
Sbjct: 4 VYIVGAGPGDPDLITVKGLKCIEKADVILY-DRLVNKELLSYAKPEADLIYCGKLPNYHT 62
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
+ ++ K+G+IV + G P + G E A+ + +P +PG SA +A
Sbjct: 63 MKQETINTFLIKYAKKGKIVTRLK-GGDPFVFGRGGEEAEALAKQGVPFEIVPGISAGIA 121
Query: 197 ALSASGL------ATDEFTFV-GFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
A + +G+ A+ F V G + A + L A V+T Y+ L ++
Sbjct: 122 APAYAGIPVTHRDASASFAIVTGHRKEDAAEEVKWGNL-AKGVETLAVYMGVSNL-PYIC 179
Query: 250 ETSLLFGYSRR---CVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304
E + G + +I R T M GTLG + Q + +++V G+ +
Sbjct: 180 EQLMKHGKDKSTPAAIIERGTTSMQRTVV-GTLGTIVDVAKKEQIQNP-SMIVIGEVV 235
>TIGR_CMR|CHY_0778 [details] [associations]
symbol:CHY_0778 "uroporphyrin-III C-methyltransferase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004851 "uroporphyrin-III C-methyltransferase activity"
evidence=ISS] [GO:0019354 "siroheme biosynthetic process"
evidence=ISS] InterPro:IPR000878 InterPro:IPR003043
InterPro:IPR006366 InterPro:IPR014776 InterPro:IPR014777
Pfam:PF00590 PROSITE:PS00839 PROSITE:PS00840 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006779 GO:GO:0043115
Gene3D:3.30.950.10 Gene3D:3.40.1010.10 SUPFAM:SSF53790
eggNOG:COG0007 GO:GO:0004851 TIGRFAMs:TIGR01469
HOGENOM:HOG000290519 RefSeq:YP_359632.1 ProteinModelPortal:Q3AE02
STRING:Q3AE02 GeneID:3728166 KEGG:chy:CHY_0778 PATRIC:21274690
KO:K02303 OMA:IKHGKDK BioCyc:CHYD246194:GJCN-778-MONOMER
Uniprot:Q3AE02
Length = 257
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 34/127 (26%), Positives = 63/127 (49%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHK 136
+YLV G+ E IT++ +++LK A V++ D S +LL+Y N L H
Sbjct: 10 VYLVGAGPGDPELITVKGIKLLKEAQVVVY-DRLISPELLKYVNPSAELYYAGKAPGRHS 68
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
N+ + + ++ + ++G++V + G P + G E A IP +PG ++ VA
Sbjct: 69 LNQEEINELLIQKAREGKMVVRLK-GGDPFVFGRGGEEALALTRAGIPFEVVPGVTSAVA 127
Query: 197 ALSASGL 203
+ +G+
Sbjct: 128 VPAYAGI 134
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 368 358 0.00081 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 613 (65 KB)
Total size of DFA: 206 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.27u 0.09s 28.36t Elapsed: 00:00:02
Total cpu time: 28.27u 0.09s 28.36t Elapsed: 00:00:02
Start: Mon May 20 22:25:06 2013 End: Mon May 20 22:25:08 2013