Query 017645
Match_columns 368
No_of_seqs 286 out of 2359
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0313 Predicted methyltransf 100.0 3.3E-70 7.1E-75 515.9 30.6 273 78-354 2-274 (275)
2 PRK14994 SAM-dependent 16S rib 100.0 5.7E-64 1.2E-68 484.0 34.1 276 78-356 9-286 (287)
3 TIGR00096 probable S-adenosylm 100.0 5.5E-63 1.2E-67 473.8 30.9 271 82-354 1-274 (276)
4 PRK06136 uroporphyrin-III C-me 100.0 3.8E-38 8.3E-43 297.6 25.9 231 79-312 1-245 (249)
5 PRK15473 cbiF cobalt-precorrin 100.0 3.6E-37 7.8E-42 293.6 27.1 223 80-304 7-236 (257)
6 TIGR01469 cobA_cysG_Cterm urop 100.0 3.3E-37 7.2E-42 288.6 25.7 218 82-302 1-231 (236)
7 TIGR01465 cobM_cbiF precorrin- 100.0 1E-36 2.2E-41 284.3 26.3 219 83-303 1-226 (229)
8 PRK05765 precorrin-3B C17-meth 100.0 2E-36 4.3E-41 286.9 23.8 218 81-304 2-226 (246)
9 PLN02625 uroporphyrin-III C-me 100.0 9.4E-36 2E-40 284.7 26.6 220 79-304 13-249 (263)
10 PRK15478 cbiH cobalt-precorrin 100.0 1.2E-35 2.7E-40 280.8 24.6 215 82-304 1-225 (241)
11 COG2875 CobM Precorrin-4 methy 100.0 1.3E-34 2.8E-39 266.6 23.0 220 80-304 2-231 (254)
12 COG0007 CysG Uroporphyrinogen- 100.0 4.1E-33 9E-38 261.3 24.1 220 79-304 2-234 (244)
13 PF00590 TP_methylase: Tetrapy 100.0 1.4E-33 3.1E-38 258.4 20.5 199 82-283 1-210 (210)
14 TIGR01466 cobJ_cbiH precorrin- 100.0 2.4E-32 5.1E-37 257.0 23.8 214 83-304 1-224 (239)
15 TIGR01467 cobI_cbiL precorrin- 100.0 2.4E-32 5.2E-37 255.7 21.8 211 81-301 1-229 (230)
16 PRK07168 bifunctional uroporph 100.0 4.9E-32 1.1E-36 278.0 25.3 219 79-304 1-235 (474)
17 COG1010 CobJ Precorrin-3B meth 100.0 9.4E-32 2E-36 248.3 22.5 219 79-305 1-230 (249)
18 PRK05991 precorrin-3B C17-meth 100.0 1.1E-31 2.4E-36 254.9 23.5 216 79-305 1-231 (250)
19 PRK10637 cysG siroheme synthas 100.0 9.9E-32 2.1E-36 275.4 24.7 218 79-304 214-445 (457)
20 PRK05576 cobalt-precorrin-2 C( 100.0 1.2E-31 2.7E-36 251.1 20.9 208 81-302 2-226 (229)
21 PRK05787 cobalt-precorrin-6Y C 100.0 4.4E-31 9.5E-36 243.1 20.4 206 82-302 1-208 (210)
22 TIGR02467 CbiE precorrin-6y C5 100.0 8.8E-30 1.9E-34 234.5 19.1 192 85-285 1-194 (204)
23 PRK05948 precorrin-2 methyltra 100.0 2.9E-29 6.2E-34 236.9 22.2 212 79-303 2-235 (238)
24 TIGR00522 dph5 diphthine synth 100.0 5E-29 1.1E-33 237.8 22.7 215 82-303 1-241 (257)
25 PTZ00175 diphthine synthase; P 100.0 1.8E-28 3.9E-33 235.3 24.3 212 82-302 2-255 (270)
26 PRK05990 precorrin-2 C(20)-met 100.0 4.8E-28 1.1E-32 229.0 22.5 211 80-302 2-236 (241)
27 PRK04160 diphthine synthase; P 100.0 5.6E-28 1.2E-32 230.4 21.9 211 82-302 1-240 (258)
28 COG2243 CobF Precorrin-2 methy 100.0 6.1E-27 1.3E-31 218.7 21.1 210 80-303 1-230 (234)
29 PRK08284 precorrin 6A synthase 100.0 8.4E-27 1.8E-31 221.9 21.0 193 81-288 2-230 (253)
30 COG2241 CobL Precorrin-6B meth 99.9 6.1E-27 1.3E-31 216.0 18.3 204 82-302 1-206 (210)
31 TIGR02434 CobF precorrin-6A sy 99.9 1.4E-26 2.9E-31 220.0 19.6 190 82-287 2-228 (249)
32 KOG1527 Uroporphyrin III methy 99.9 4.6E-26 9.9E-31 219.9 13.9 217 81-304 256-486 (506)
33 COG1798 DPH5 Diphthamide biosy 99.9 1.6E-21 3.4E-26 181.9 19.9 212 82-303 1-240 (260)
34 KOG3123 Diphthine synthase [Tr 99.7 1.2E-15 2.6E-20 139.1 15.6 213 82-302 1-254 (272)
35 COG3956 Protein containing tet 99.1 2E-09 4.2E-14 105.0 15.5 196 79-286 1-211 (488)
36 PF13309 HTH_22: HTH domain 86.8 1.5 3.2E-05 33.2 4.8 38 313-350 24-62 (64)
37 PRK12723 flagellar biosynthesi 85.9 43 0.00093 34.3 16.3 169 152-339 205-382 (388)
38 PF02796 HTH_7: Helix-turn-hel 85.3 1.7 3.7E-05 30.3 4.2 30 318-351 13-42 (45)
39 PF03701 UPF0181: Uncharacteri 78.4 4.2 9.1E-05 29.5 4.1 26 315-340 16-41 (51)
40 COG0120 RpiA Ribose 5-phosphat 75.5 9 0.0002 36.3 6.7 108 85-205 23-156 (227)
41 PF05225 HTH_psq: helix-turn-h 72.3 13 0.00029 26.0 5.3 36 313-352 3-38 (45)
42 COG2964 Uncharacterized protei 70.8 8.9 0.00019 36.2 5.4 41 316-356 176-217 (220)
43 PF05402 PqqD: Coenzyme PQQ sy 70.1 20 0.00043 26.5 6.3 36 318-353 21-56 (68)
44 PRK05114 hypothetical protein; 68.2 10 0.00022 28.3 4.1 25 315-339 16-40 (59)
45 PF04256 DUF434: Protein of un 62.9 15 0.00033 27.4 4.3 36 315-350 6-41 (58)
46 PF06056 Terminase_5: Putative 62.7 19 0.00041 26.7 4.7 34 318-355 5-38 (58)
47 PF13384 HTH_23: Homeodomain-l 61.2 12 0.00026 26.0 3.4 33 322-358 13-45 (50)
48 COG3140 Uncharacterized protei 60.6 14 0.0003 27.4 3.6 26 315-340 16-41 (60)
49 cd01524 RHOD_Pyr_redox Member 59.2 55 0.0012 25.3 7.3 84 96-191 1-84 (90)
50 PF13936 HTH_38: Helix-turn-he 58.7 13 0.00028 25.7 3.1 30 318-351 12-41 (44)
51 PRK02261 methylaspartate mutas 58.4 1.2E+02 0.0027 26.1 10.8 112 79-192 1-122 (137)
52 PRK10017 colanic acid biosynth 57.4 66 0.0014 33.3 9.3 48 82-130 150-199 (426)
53 COG3964 Predicted amidohydrola 57.3 30 0.00065 34.6 6.3 113 89-203 131-262 (386)
54 PLN02282 phosphoglycerate kina 55.6 2.3E+02 0.005 29.3 12.7 151 141-304 44-203 (401)
55 PLN03034 phosphoglycerate kina 53.6 1.9E+02 0.0042 30.5 11.9 107 141-247 119-234 (481)
56 smart00550 Zalpha Z-DNA-bindin 52.0 36 0.00077 25.7 4.9 30 331-360 23-52 (68)
57 PF06506 PrpR_N: Propionate ca 49.6 73 0.0016 28.4 7.3 105 91-204 17-145 (176)
58 cd00569 HTH_Hin_like Helix-tur 48.4 39 0.00085 20.0 4.0 29 318-350 13-41 (42)
59 PF13551 HTH_29: Winged helix- 48.3 32 0.0007 27.5 4.4 36 321-359 6-41 (112)
60 PF13518 HTH_28: Helix-turn-he 48.1 46 0.00099 22.9 4.6 35 319-358 6-40 (52)
61 PF00162 PGK: Phosphoglycerate 45.7 2.6E+02 0.0056 28.7 11.3 106 140-245 34-154 (384)
62 TIGR03855 NAD_NadX aspartate d 44.3 2.8E+02 0.0061 26.1 15.5 92 141-241 49-141 (229)
63 PF00389 2-Hacid_dh: D-isomer 43.8 1.7E+02 0.0038 24.3 8.5 95 95-200 6-101 (133)
64 cd02067 B12-binding B12 bindin 43.5 1.8E+02 0.0039 23.7 8.4 101 84-191 2-111 (119)
65 PRK00073 pgk phosphoglycerate 43.0 3.6E+02 0.0078 27.7 11.8 105 140-245 36-150 (389)
66 PF02954 HTH_8: Bacterial regu 41.9 98 0.0021 20.9 5.4 27 321-351 13-39 (42)
67 PF09339 HTH_IclR: IclR helix- 40.9 30 0.00065 24.4 2.8 30 332-361 20-49 (52)
68 COG0206 FtsZ Cell division GTP 39.8 2.1E+02 0.0046 28.8 9.5 139 79-240 10-166 (338)
69 TIGR01764 excise DNA binding d 39.7 34 0.00073 22.9 2.8 20 334-353 5-24 (49)
70 PRK14719 bifunctional RNAse/5- 38.5 1.5E+02 0.0033 29.9 8.4 73 107-186 24-99 (360)
71 TIGR03859 PQQ_PqqD coenzyme PQ 38.2 1.1E+02 0.0024 23.9 5.9 57 291-354 14-70 (81)
72 smart00411 BHL bacterial (prok 37.9 53 0.0012 25.7 4.1 27 327-353 1-27 (90)
73 PRK07239 bifunctional uroporph 37.3 1.6E+02 0.0036 29.4 8.5 85 101-189 93-177 (381)
74 COG1737 RpiR Transcriptional r 37.2 3.3E+02 0.007 26.2 10.2 95 139-240 116-212 (281)
75 PF00046 Homeobox: Homeobox do 36.0 1.5E+02 0.0033 20.8 6.5 32 323-354 20-51 (57)
76 COG1154 Dxs Deoxyxylulose-5-ph 35.8 85 0.0019 34.0 6.2 59 223-285 544-606 (627)
77 COG4566 TtrR Response regulato 35.1 72 0.0016 29.7 4.9 49 144-194 38-88 (202)
78 PF07750 GcrA: GcrA cell cycle 34.9 52 0.0011 29.5 3.9 37 315-354 7-43 (162)
79 PRK09456 ?-D-glucose-1-phospha 34.7 3.1E+02 0.0067 24.4 9.1 57 188-251 141-197 (199)
80 cd00423 Pterin_binding Pterin 34.5 2.4E+02 0.0052 26.8 8.7 82 82-166 39-133 (258)
81 COG2150 Predicted regulator of 34.3 36 0.00077 30.7 2.7 37 317-353 17-64 (167)
82 COG2204 AtoC Response regulato 34.1 2.5E+02 0.0054 29.6 9.2 178 106-302 4-202 (464)
83 TIGR02329 propionate_PrpR prop 34.0 4.7E+02 0.01 27.9 11.5 105 91-204 37-165 (526)
84 TIGR00715 precor6x_red precorr 33.9 3.9E+02 0.0084 25.6 10.0 27 183-210 153-179 (256)
85 PF13565 HTH_32: Homeodomain-l 33.5 1E+02 0.0022 23.1 4.9 38 313-350 33-76 (77)
86 PF01978 TrmB: Sugar-specific 32.7 45 0.00098 24.7 2.7 36 319-358 14-50 (68)
87 TIGR03365 Bsubt_queE 7-cyano-7 32.6 1.2E+02 0.0026 28.6 6.1 55 141-196 60-114 (238)
88 PF13404 HTH_AsnC-type: AsnC-t 32.5 77 0.0017 21.8 3.6 26 329-354 16-41 (42)
89 TIGR01819 F420_cofD LPPG:FO 2- 32.4 1.7E+02 0.0037 29.0 7.3 72 94-185 170-242 (297)
90 PF09822 ABC_transp_aux: ABC-t 32.3 4.4E+02 0.0095 24.9 10.6 92 139-242 131-235 (271)
91 TIGR00284 dihydropteroate synt 32.0 5.2E+02 0.011 27.5 11.3 108 81-193 179-291 (499)
92 PRK13018 cell division protein 31.8 1.9E+02 0.0042 29.5 7.9 97 80-182 28-142 (378)
93 PLN02335 anthranilate synthase 31.8 49 0.0011 30.9 3.3 39 147-190 12-50 (222)
94 COG2870 RfaE ADP-heptose synth 31.5 2.3E+02 0.0049 29.6 8.1 53 141-195 132-184 (467)
95 PF01402 RHH_1: Ribbon-helix-h 31.0 93 0.002 20.3 3.8 25 330-354 11-35 (39)
96 TIGR01641 phageSPP1_gp7 phage 31.0 1E+02 0.0022 25.0 4.8 34 318-351 4-37 (108)
97 TIGR02531 yecD_yerC TrpR-relat 30.7 1.1E+02 0.0024 24.7 4.7 32 317-353 41-72 (88)
98 PF05930 Phage_AlpA: Prophage 30.7 53 0.0012 23.2 2.7 21 333-353 6-26 (51)
99 smart00351 PAX Paired Box doma 29.9 1.1E+02 0.0024 25.8 5.0 34 318-355 25-58 (125)
100 smart00421 HTH_LUXR helix_turn 29.8 1.4E+02 0.003 20.1 4.8 30 321-354 13-42 (58)
101 cd06578 HemD Uroporphyrinogen- 29.7 4.1E+02 0.0088 23.7 10.0 28 276-303 105-132 (239)
102 PF00216 Bac_DNA_binding: Bact 29.7 67 0.0015 25.0 3.4 27 327-353 1-27 (90)
103 PF12116 SpoIIID: Stage III sp 29.6 47 0.001 26.5 2.4 23 329-351 18-40 (82)
104 PRK05234 mgsA methylglyoxal sy 29.6 1.9E+02 0.0042 25.2 6.5 92 102-200 28-125 (142)
105 COG1712 Predicted dinucleotide 29.4 5.3E+02 0.011 24.9 15.3 123 82-213 2-144 (255)
106 TIGR00238 KamA family protein. 29.4 5.7E+02 0.012 25.3 11.3 40 140-180 144-187 (331)
107 cd01454 vWA_norD_type norD typ 29.2 1.8E+02 0.004 25.3 6.5 16 153-169 104-119 (174)
108 PF08279 HTH_11: HTH domain; 29.1 95 0.0021 21.8 3.8 39 318-358 5-43 (55)
109 PRK05443 polyphosphate kinase; 29.1 2.6E+02 0.0056 31.0 8.7 85 100-185 332-425 (691)
110 cd05013 SIS_RpiR RpiR-like pro 29.0 3.1E+02 0.0067 22.1 8.7 40 150-192 58-97 (139)
111 PF12728 HTH_17: Helix-turn-he 29.0 62 0.0013 22.5 2.8 20 334-353 5-24 (51)
112 PF02571 CbiJ: Precorrin-6x re 28.8 2.8E+02 0.006 26.5 8.0 25 181-211 153-177 (249)
113 COG0019 LysA Diaminopimelate d 28.7 4.6E+02 0.0099 26.9 10.0 107 128-247 26-133 (394)
114 cd00739 DHPS DHPS subgroup of 28.4 3E+02 0.0066 26.3 8.3 66 99-167 66-134 (257)
115 COG1504 Uncharacterized conser 28.0 2.5E+02 0.0053 24.0 6.4 81 106-194 20-101 (121)
116 cd00131 PAX Paired Box domain 27.9 1.3E+02 0.0028 25.7 5.1 37 315-355 22-58 (128)
117 PRK11557 putative DNA-binding 27.7 5.2E+02 0.011 24.3 10.6 66 140-210 115-180 (278)
118 PF09897 DUF2124: Uncharacteri 27.5 1E+02 0.0023 27.3 4.4 39 151-192 17-56 (147)
119 PF01710 HTH_Tnp_IS630: Transp 27.1 1.4E+02 0.003 25.0 5.0 35 314-352 6-40 (119)
120 COG2243 CobF Precorrin-2 methy 26.8 22 0.00047 34.0 0.1 56 1-56 173-230 (234)
121 COG1395 Predicted transcriptio 26.3 4.1E+02 0.0089 26.5 8.8 89 248-350 61-158 (313)
122 PRK11337 DNA-binding transcrip 26.0 5.8E+02 0.013 24.3 10.1 65 141-210 128-192 (292)
123 COG0602 NrdG Organic radical a 26.0 1.7E+02 0.0038 27.1 6.0 48 143-191 58-108 (212)
124 PF04392 ABC_sub_bind: ABC tra 25.9 2.4E+02 0.0053 26.9 7.2 46 141-186 119-164 (294)
125 PHA00675 hypothetical protein 25.7 1.7E+02 0.0036 23.3 4.8 31 317-351 29-60 (78)
126 COG0796 MurI Glutamate racemas 25.6 6.4E+02 0.014 24.6 12.7 98 80-202 5-111 (269)
127 PF06755 DUF1219: Protein of u 25.4 91 0.002 26.4 3.4 27 318-344 48-74 (114)
128 COG0391 Uncharacterized conser 25.1 7.1E+02 0.015 25.0 10.6 31 82-115 168-199 (323)
129 PLN02537 diaminopimelate decar 24.8 7.3E+02 0.016 25.0 13.2 117 119-250 9-126 (410)
130 PRK11302 DNA-binding transcrip 24.8 5.2E+02 0.011 24.3 9.2 95 99-199 120-219 (284)
131 TIGR00511 ribulose_e2b2 ribose 24.6 3.6E+02 0.0078 26.5 8.1 108 143-277 129-236 (301)
132 PRK08535 translation initiatio 24.5 3.5E+02 0.0077 26.6 8.1 109 141-276 132-240 (310)
133 cd01523 RHOD_Lact_B Member of 24.5 3.4E+02 0.0074 21.1 8.9 82 102-190 8-93 (100)
134 COG1737 RpiR Transcriptional r 24.4 3.3E+02 0.0071 26.2 7.8 88 98-191 121-213 (281)
135 cd06170 LuxR_C_like C-terminal 24.3 1.8E+02 0.0038 19.7 4.5 29 322-354 11-39 (57)
136 TIGR01761 thiaz-red thiazoliny 24.2 2.3E+02 0.005 28.4 6.8 89 81-187 4-95 (343)
137 PRK13606 LPPG:FO 2-phospho-L-l 23.7 1.7E+02 0.0036 29.1 5.5 81 82-185 164-245 (303)
138 PF12651 RHH_3: Ribbon-helix-h 23.7 1.3E+02 0.0028 20.9 3.5 23 332-354 16-38 (44)
139 COG3415 Transposase and inacti 23.4 2.2E+02 0.0047 25.0 5.6 35 320-358 15-49 (138)
140 cd04762 HTH_MerR-trunc Helix-T 23.3 93 0.002 20.4 2.8 20 334-353 4-23 (49)
141 PRK13962 bifunctional phosphog 23.2 1E+03 0.022 26.2 13.0 107 140-246 39-155 (645)
142 PF14420 Clr5: Clr5 domain 23.1 1.9E+02 0.0041 20.8 4.4 33 312-344 5-38 (54)
143 TIGR01921 DAP-DH diaminopimela 23.0 3.3E+02 0.0071 27.3 7.6 92 103-194 57-153 (324)
144 cd00006 PTS_IIA_man PTS_IIA, P 22.9 3E+02 0.0065 22.8 6.4 55 140-200 44-100 (122)
145 PF00196 GerE: Bacterial regul 22.5 1.3E+02 0.0028 21.5 3.5 32 319-354 11-42 (58)
146 PRK13413 mpi multiple promoter 22.4 1.6E+02 0.0035 26.6 5.0 31 317-351 163-193 (200)
147 PRK00421 murC UDP-N-acetylmura 22.4 7.8E+02 0.017 25.2 10.6 37 140-179 421-457 (461)
148 PRK12562 ornithine carbamoyltr 22.2 7.5E+02 0.016 24.7 10.0 63 97-166 93-166 (334)
149 TIGR02495 NrdG2 anaerobic ribo 22.1 2.9E+02 0.0062 24.4 6.5 36 156-192 65-100 (191)
150 PRK13303 L-aspartate dehydroge 22.0 2.3E+02 0.0051 27.0 6.2 72 141-215 73-147 (265)
151 TIGR00987 himA integration hos 22.0 1.4E+02 0.0031 23.9 4.0 26 327-352 2-27 (96)
152 smart00760 Bac_DnaA_C Bacteria 22.0 1E+02 0.0023 22.4 2.9 20 329-348 2-21 (60)
153 COG3311 AlpA Predicted transcr 21.9 93 0.002 24.2 2.7 21 333-353 16-36 (70)
154 PHA02591 hypothetical protein; 21.8 2.6E+02 0.0056 22.4 5.1 35 313-351 46-80 (83)
155 cd00591 HU_IHF Integration hos 21.6 1.5E+02 0.0031 22.9 3.9 25 329-353 2-26 (87)
156 PRK13384 delta-aminolevulinic 21.4 2.5E+02 0.0054 28.1 6.2 85 87-184 91-187 (322)
157 PRK11557 putative DNA-binding 21.4 6.2E+02 0.013 23.8 9.0 87 99-191 120-211 (278)
158 COG5352 Uncharacterized protei 21.4 81 0.0018 27.9 2.5 36 316-354 8-43 (169)
159 cd04890 ACT_AK-like_1 ACT doma 21.2 1.8E+02 0.004 20.6 4.2 29 161-189 7-35 (62)
160 COG1063 Tdh Threonine dehydrog 21.1 2.5E+02 0.0054 27.9 6.4 78 82-166 171-250 (350)
161 COG1832 Predicted CoA-binding 21.0 2.3E+02 0.0049 25.0 5.2 104 144-273 7-111 (140)
162 smart00345 HTH_GNTR helix_turn 21.0 1.2E+02 0.0026 21.0 3.1 28 332-359 22-49 (60)
163 cd05013 SIS_RpiR RpiR-like pro 21.0 4.4E+02 0.0096 21.1 10.6 50 143-195 3-52 (139)
164 cd01450 vWFA_subfamily_ECM Von 20.9 3.3E+02 0.0072 22.4 6.4 33 155-188 106-138 (161)
165 PF13011 LZ_Tnp_IS481: leucine 20.9 3.1E+02 0.0067 22.1 5.6 39 317-359 16-54 (85)
166 cd01407 SIR2-fam SIR2 family o 20.9 3.7E+02 0.0081 24.7 7.1 58 131-192 147-205 (218)
167 PRK09413 IS2 repressor TnpA; R 20.9 2.5E+02 0.0054 23.5 5.4 36 316-355 19-54 (121)
168 PRK10664 transcriptional regul 20.8 1.4E+02 0.003 23.9 3.7 25 327-351 1-25 (90)
169 PRK15424 propionate catabolism 20.8 8.2E+02 0.018 26.2 10.4 91 105-204 63-175 (538)
170 PF01527 HTH_Tnp_1: Transposas 20.7 2E+02 0.0043 21.3 4.4 36 316-355 13-48 (76)
171 PF08004 DUF1699: Protein of u 20.7 2.3E+02 0.0049 24.6 5.0 36 313-348 91-126 (131)
172 PRK08057 cobalt-precorrin-6x r 20.7 7.4E+02 0.016 23.6 9.6 22 181-208 149-170 (248)
173 PF04218 CENP-B_N: CENP-B N-te 20.6 1E+02 0.0022 22.1 2.6 27 321-351 17-43 (53)
174 PRK09189 uroporphyrinogen-III 20.6 2.8E+02 0.006 25.7 6.2 63 118-188 85-147 (240)
175 PRK03868 glucose-6-phosphate i 20.5 4.8E+02 0.01 26.9 8.4 46 153-206 145-199 (410)
176 cd05014 SIS_Kpsf KpsF-like pro 20.4 2.5E+02 0.0055 22.8 5.4 11 81-91 1-11 (128)
177 COG3580 Uncharacterized protei 20.2 1.3E+02 0.0028 30.1 4.0 49 143-192 190-240 (351)
178 TIGR02247 HAD-1A3-hyp Epoxide 20.2 6.1E+02 0.013 22.4 9.7 56 188-250 152-207 (211)
179 cd01474 vWA_ATR ATR (Anthrax T 20.1 5.2E+02 0.011 22.7 7.7 31 222-253 147-179 (185)
No 1
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=100.00 E-value=3.3e-70 Score=515.89 Aligned_cols=273 Identities=49% Similarity=0.720 Sum_probs=253.8
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEE
Q 017645 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (368)
Q Consensus 78 ~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (368)
+++|+||+|+|||||++|||+||+++|++||+|+|||||++++||++|+|++++++||+||+++....+++.+++|++||
T Consensus 2 ~~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~va 81 (275)
T COG0313 2 MMMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVA 81 (275)
T ss_pred CCCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEE
Q 017645 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (368)
Q Consensus 158 lvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVl 237 (368)
+|||||+|+|||||+.||++|++.||+|+++||+||+++|+++||+|.++|.|.||||.+.++|.+.|+.+.+...|+||
T Consensus 82 lVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~~~~t~If 161 (275)
T COG0313 82 LVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIF 161 (275)
T ss_pred EEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCcCccCCCChHHHHH
Q 017645 238 YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEK 317 (368)
Q Consensus 238 yesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~~~~~~~~~~~~~~ 317 (368)
||+|||+.++|+++.+.+|.+++++|||||||.+|++++|++.++.+++.+...|||||+||.|+.... .+.....
T Consensus 162 yEsphRl~~tL~d~~~~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~~~~KGE~vlvv~~~~~~~----~~~~~~~ 237 (275)
T COG0313 162 YESPHRLLATLEDIVEVLGSDREVVVARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVVEGKNKAE----AELSLDA 237 (275)
T ss_pred EecchhHHHHHHHHHHHcCCCceEEEEeecccchhheecccHHHHHHHhhhcCCcccEEEEEeCCcccc----cccchhH
Confidence 999999999999999999989999999999999999999999999999876437999999999965432 1112223
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.+..++..++++|+|++.+|+.+|++||++|+.+++.
T Consensus 238 ~~~~~~~~~l~~k~A~~~~a~~~~~~k~~LY~~~l~~ 274 (275)
T COG0313 238 EITLLLLQALPLKKAAKLAAKITGLNKKELYQLALES 274 (275)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHCcCHHHHHHHHHhc
Confidence 3444555679999999999999999999999999865
No 2
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=100.00 E-value=5.7e-64 Score=483.98 Aligned_cols=276 Identities=41% Similarity=0.650 Sum_probs=251.3
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEE
Q 017645 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (368)
Q Consensus 78 ~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (368)
.++|+||+||||||||+|||+||+++|++||+|+|||+|++.+++++++++++++++|+||+.+..+.|++.+++|++||
T Consensus 9 ~~~g~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~G~~Va 88 (287)
T PRK14994 9 NSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLQEGQNIA 88 (287)
T ss_pred CCCCeEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEccCCCHHHHHHHHHHHHHCCCeEE
Confidence 35689999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEE
Q 017645 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (368)
Q Consensus 158 lvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVl 237 (368)
++||+|||+|||||++|++.+++.|++|++||||||+++|++++|+|.++|.|.||+|.+..+|.+.|+.+.+.+.|+||
T Consensus 89 lvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~~~~~t~V~ 168 (287)
T PRK14994 89 LVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEPRTLIF 168 (287)
T ss_pred EEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred ecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHh--CCCCCcEEEEEeCCCcCccCCCChHHH
Q 017645 238 YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEGKAICVVETPSEDQL 315 (368)
Q Consensus 238 yesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~--~~~kge~vlvi~g~~~~~~~~~~~~~~ 315 (368)
|++|||+.++++++.+.+++++++++++++||.||++++|+++++.+++.+ ..+||||||||.|+... .+..+ ++.
T Consensus 169 yesp~R~~~~l~~l~~~~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~~~~~~~~kGE~vivi~~~~~~-~~~~~-~~~ 246 (287)
T PRK14994 169 YESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQ-EDDLP-ADA 246 (287)
T ss_pred EEEChhHHHHHHHHHHhcCCCCeEEEEeeccCCCCcEEeeEHHHHHHHHHhcCCCCCceEEEEEeCCccc-ccccc-hhH
Confidence 999999999999999989889999999999999999999999999999854 34699999999986432 11122 222
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 017645 316 EKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFG 356 (368)
Q Consensus 316 ~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~ 356 (368)
.+.+. ++.+|+++|+|+|.+|+.+|++||++|+++++.++
T Consensus 247 ~~~~~-~~~~~~~~k~a~~~~a~~~~~~k~~~Y~~~~~~~~ 286 (287)
T PRK14994 247 LRTLA-LLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG 286 (287)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHCcCHHHHHHHHHHhhc
Confidence 23333 55679999999999999999999999999998655
No 3
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=100.00 E-value=5.5e-63 Score=473.79 Aligned_cols=271 Identities=36% Similarity=0.497 Sum_probs=246.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEcc
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSd 161 (368)
+||+|||||||++|||+||+++|++||+|+|||||++++||++|+|.+++++||+||+.++.+.+++.+++|++||+|||
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~valvSD 80 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNNIAVSSD 80 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCcEEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCc
Q 017645 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPP 241 (368)
Q Consensus 162 aGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp 241 (368)
||+|+|+|||+.||+.|+++|++|.++||+||+++|++.||++.+.|.|.||+|.+.++|++.++.+...+.|+|||++|
T Consensus 81 AG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f~F~GFlp~k~~~r~~~l~~l~~~~~t~ifyEsp 160 (276)
T TIGR00096 81 AGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRFFFGGFLPKKSKRRQALKAYIAEERTTVFFYESH 160 (276)
T ss_pred CCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCceEEeeeCCCChHHHHHHHHHHhCCCCeEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhC---CCCCcEEEEEeCCCcCccCCCChHHHHHH
Q 017645 242 HKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSH---QPKGEITVLVEGKAICVVETPSEDQLEKE 318 (368)
Q Consensus 242 ~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~---~~kge~vlvi~g~~~~~~~~~~~~~~~~~ 318 (368)
||+.++++++...+| ++++++||||||.||++++|+++++.+++.+. ..+|||||||.|.......... ++....
T Consensus 161 ~Rl~~~L~~l~~~~g-~r~i~~arELTK~~E~~~~g~~~e~~~~~~~~~~~~~kGE~vlvi~g~~~~~~~~~~-~~~~~~ 238 (276)
T TIGR00096 161 HRLLTTLTDLNVFLG-SERFVGAAELTKKESEYWFGTVGQLLPDITEDTNNRKGGEVILIINGHKPQEECSDL-QALALE 238 (276)
T ss_pred HhHHHHHHHHHHhcC-CceEEEEEecCCCceEEEeCCHHHHHHHHHhccCCCCCeEEEEEEeCCccccccccc-hhHHHH
Confidence 999999999988776 79999999999999999999999999998743 4699999999884321111111 223344
Q ss_pred HHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 319 LRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 319 ~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
+..++.+|+++|+|++.+|+.++++||++|+.++..
T Consensus 239 ~~~~l~~~~~~k~aa~~~a~~~~~~k~~~y~~~~~~ 274 (276)
T TIGR00096 239 ILALLQAEVLLKKAAAYIAAEMTLKKNKLLYQFHLL 274 (276)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhcCCcHHHHHHHHhh
Confidence 455566799999999999999999999999988764
No 4
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=3.8e-38 Score=297.63 Aligned_cols=231 Identities=20% Similarity=0.271 Sum_probs=184.9
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcC------CCcHHHHHHHHHHHHhC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQ 152 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~------~~ne~~~~~~Ii~~l~~ 152 (368)
|+|+||+||+|||||++||+||+++|++||+|+|++ +..+++++.++.+.+.+..+ ...+++..+.+.+.+.+
T Consensus 1 ~~g~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (249)
T PRK06136 1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDD-LVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARK 79 (249)
T ss_pred CCcEEEEEEECCCChHHHHHHHHHHHhcCCEEEEcC-CCCHHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHHHC
Confidence 468999999999999999999999999999999975 56777888776544444332 22334455677788889
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchhh-HHHH
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR-TERL 225 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~~-~~~L 225 (368)
|++|+++ +.|||++|+++.++++++.+.|+++++||||||+++|+|++|+||+ ++.|+++.++....+ ...+
T Consensus 80 g~~V~~l-~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (249)
T PRK06136 80 GKVVVRL-KGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPEVNW 158 (249)
T ss_pred CCeEEEE-eCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccccccCH
Confidence 9999999 6999999999999999999999999999999999999999999996 566664333222111 2235
Q ss_pred HhhhcCCceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 226 MLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 226 ~~l~~~~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
+.+++...|+|||+.++++.++++.|.+. +++++++++++++|+++|++++++++++.+.+.+...+++++|| +|+..
T Consensus 159 ~~l~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~vvi-ig~~~ 237 (249)
T PRK06136 159 SALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPAIIV-IGEVV 237 (249)
T ss_pred HHHhCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEE-Echhh
Confidence 67778889999999999999999998874 66688999999999999999999999999887766667885555 56654
Q ss_pred CccCCCCh
Q 017645 305 CVVETPSE 312 (368)
Q Consensus 305 ~~~~~~~~ 312 (368)
...+..+|
T Consensus 238 ~~~~~~~~ 245 (249)
T PRK06136 238 ALRAKLAW 245 (249)
T ss_pred Cccccccc
Confidence 33334444
No 5
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=3.6e-37 Score=293.56 Aligned_cols=223 Identities=17% Similarity=0.221 Sum_probs=185.1
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEE
Q 017645 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (368)
Q Consensus 80 ~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Valv 159 (368)
+++||+||+|||||++||+||+++|++||+|+|++++....+++++..++..+.......++..+.+.+.+++|++||++
T Consensus 7 ~~~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~Vv~L 86 (257)
T PRK15473 7 PRCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDSAELHLEQIIDLMEAGVKAGKTVVRL 86 (257)
T ss_pred CCEEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 38999999999999999999999999999999987666777888776555444333344566677778878899999999
Q ss_pred ccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchhhHHHHHhhhcCCc
Q 017645 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLMLSANEVK 233 (368)
Q Consensus 160 SdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~~~~~L~~l~~~~~ 233 (368)
+ .|||++|+++.++++++.+.|++|+++||+||+++|+|++|+||. ++.++++..+........|..+++.+.
T Consensus 87 ~-sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~~~~~l~~~~~~~~ 165 (257)
T PRK15473 87 Q-TGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAREQLESFASHQT 165 (257)
T ss_pred e-CcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCCchhhHHHHhcCCC
Confidence 5 999999999999999999999999999999999999999999994 676654432221112245788888888
Q ss_pred eEEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 234 TQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 234 tlVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
++|||++++++.++++.|.+ ++++++++++++++|+++|++++++++++.+.+.+...+++. +||+|+..
T Consensus 166 t~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~~~~~~~-~ivvG~~~ 236 (257)
T PRK15473 166 SMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKTA-LILVGNFL 236 (257)
T ss_pred eEEEECCchhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCE-EEEEchhc
Confidence 99999999999999999987 476789999999999999999999999999988776677885 55556644
No 6
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=3.3e-37 Score=288.61 Aligned_cols=218 Identities=23% Similarity=0.313 Sum_probs=179.9
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEc------CCCcHHHHHHHHHHHHhCCCe
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQGEI 155 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~------~~~ne~~~~~~Ii~~l~~Gk~ 155 (368)
+||+||+|||||++||+||+++|++||+|++ +++++.++++.++...+.+.+ +....++..+.+.+.+++|++
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 79 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLY-DALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKK 79 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEE-eCCCCHHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCe
Confidence 4899999999999999999999999999999 577788888887655554433 222334555667788889999
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchhhHHHHHhhh
Q 017645 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLMLSA 229 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~~~~~L~~l~ 229 (368)
|+++ +.|||++|+++.++++++.+.|++|++|||+||+++|+|++|+||+ +|.|+++.++....+...++.+.
T Consensus 80 V~~l-~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 158 (236)
T TIGR01469 80 VVRL-KGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEVDWEALA 158 (236)
T ss_pred EEEE-eCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCcccccCHHHHh
Confidence 9999 7999999999999999999999999999999999999999999997 57777543332221112367778
Q ss_pred cCCceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 230 NEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 230 ~~~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
+..+|+|||++++++.++++.|.+. +++++++++++++|+++|++++++++++.+++...+.+++++++| |+
T Consensus 159 ~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~vviv-g~ 231 (236)
T TIGR01469 159 KGAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPALIVI-GE 231 (236)
T ss_pred cCCCeEEEECCHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEE-cc
Confidence 8888999999999999999998874 666889999999999999999999999998876666788865554 65
No 7
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=1e-36 Score=284.32 Aligned_cols=219 Identities=21% Similarity=0.265 Sum_probs=180.4
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccC
Q 017645 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (368)
Q Consensus 83 LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSda 162 (368)
||+||+|||||++||+||+++|++||+|+|++++.+..+++.+..+++.+..+..++.+..+.+.+.+++|++|++++ .
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~L~-~ 79 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREGKLVVRLH-T 79 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCCCeEEEEe-C
Confidence 699999999999999999999999999999887777778877766666665555666777788888888999999994 9
Q ss_pred CCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchhhHHHHHhhhcCCceEE
Q 017645 163 GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLMLSANEVKTQI 236 (368)
Q Consensus 163 GdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~~~~~L~~l~~~~~tlV 236 (368)
|||++|+++.++++.+.+.|+++++|||+||+++|++++|+||. .+.+.....+........|..+++.+.+++
T Consensus 80 GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~v 159 (229)
T TIGR01465 80 GDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEKLADLAKHGATMA 159 (229)
T ss_pred cCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999993 333331111111012345777778788999
Q ss_pred EecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCC
Q 017645 237 FYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (368)
Q Consensus 237 lyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~ 303 (368)
+|++++++.++.+.|.+. +++++++++++++|+++|++++++++++.+...+...+++ ++||.|+.
T Consensus 160 i~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~~-~~ivvg~~ 226 (229)
T TIGR01465 160 IFLSAHILDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRT-TLILVGPA 226 (229)
T ss_pred EECcHHHHHHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCC-EEEEECcc
Confidence 999999999999988875 6678999999999999999999999999988765555676 56666754
No 8
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=2e-36 Score=286.90 Aligned_cols=218 Identities=22% Similarity=0.284 Sum_probs=178.6
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEc
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvS 160 (368)
|+||+||+|||||++||+||+++|++||+|+|++++ .++++.+..+++++..+++++....+.+++.+++|++|++++
T Consensus 2 g~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~Vv~l~ 79 (246)
T PRK05765 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTY--LRLISDLLDGKEVIGARMKEEIFRANTAIEKALEGNIVALVS 79 (246)
T ss_pred CEEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCH--HHHHHHhcCCCEEecCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 789999999999999999999999999999998754 356666655667776665554444567888888999999995
Q ss_pred cCCCCCCCCcHHHHHHHhhhCCC--CEEEEcCccHHHHHHHhcCCCCC-cEEEEEecCCC--chhhHHHHHhhhcCCceE
Q 017645 161 DAGTPGISDPGTELAKLCVDEKI--PVVPIPGASAFVAALSASGLATD-EFTFVGFLPKH--ARSRTERLMLSANEVKTQ 235 (368)
Q Consensus 161 daGdP~isdpg~~Lv~~~~~~gi--~V~vIPGiSA~~aA~a~sGlp~~-~f~fvGflp~~--~~~~~~~L~~l~~~~~tl 235 (368)
.|||++||++.++++.+.+.|+ +|++|||+||+++|++++|+||. +|.|+++.... .......|..+.+...++
T Consensus 80 -~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~~~s~~~~~~p~~~~~~~l~~~~~~~~~i 158 (246)
T PRK05765 80 -SGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVVISLSDLLIPREEILHRVTKAAEADFVI 158 (246)
T ss_pred -CCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcEEEEcCCCCCChHHHHHHHHHHhcCCeEE
Confidence 6999999999999999998877 79999999999999999999995 89998653211 122234566677888999
Q ss_pred EEecC--cccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 236 IFYVP--PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 236 Vlyes--p~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
+||++ ++++.++++.|.++++++++|++++++|+++|+++++|++++.+.... . +..++|++|+..
T Consensus 159 vly~~~~~~~~~~~~~~l~~~~~~~~pv~vv~~~t~~~E~i~~~tL~~l~~~~~~--~-~~~~~iiVg~~~ 226 (246)
T PRK05765 159 VFYNPINENLLIEVMDIVSKHRKPNTPVGLVKSAYRNNENVVITTLSSWKEHMDE--I-GMTTTMIIGNSL 226 (246)
T ss_pred EEEcccchhHHHHHHHHHHhcCCCCCEEEEEEeCCCCCeEEEEEEHHHhhhhhhc--C-CCceEEEECCcc
Confidence 99997 567888888787778889999999999999999999999999766543 2 345788888765
No 9
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=9.4e-36 Score=284.69 Aligned_cols=220 Identities=22% Similarity=0.296 Sum_probs=181.5
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEE------cCCCcHHHHHHHHHHHHhC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLKQ 152 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is------~~~~ne~~~~~~Ii~~l~~ 152 (368)
++|+||+||+|||||++||+||+++|++||+|++++ +++..+++.+..+++.+. ++..+.++..+.+.+.+.+
T Consensus 13 ~~g~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 91 (263)
T PLN02625 13 GPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDR-LVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAEA 91 (263)
T ss_pred CCCEEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeC-cCCHHHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHHHC
Confidence 679999999999999999999999999999999964 566778887765554432 2333455666777788888
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchh----hH
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS----RT 222 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~----~~ 222 (368)
|++|+++ +.|||++|+++.++++.+.+.|++|++|||+||+++|++++|+||+ +|.|+ +.|++. +.
T Consensus 92 g~~Vvvl-~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~---s~h~~~~~~~~~ 167 (263)
T PLN02625 92 GKTVVRL-KGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFL---TGHDREGGTDPL 167 (263)
T ss_pred CCeEEEE-cCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEE---ecccCCCcccch
Confidence 9999999 6999999999999999999999999999999999999999999996 46665 444321 22
Q ss_pred HHHHhhhcCCceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeC
Q 017645 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301 (368)
Q Consensus 223 ~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g 301 (368)
..++.+.+...|+|||+.++++.++++.|.+. +++++++++++++|+++|++++++++++.+.+.+...+++++++| |
T Consensus 168 ~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vvii-g 246 (263)
T PLN02625 168 DVAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVIVV-G 246 (263)
T ss_pred hhHHHHhCCCCeEEEECchhhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEE-c
Confidence 34666677788999999999999999988873 666889999999999999999999999998876666778865555 6
Q ss_pred CCc
Q 017645 302 KAI 304 (368)
Q Consensus 302 ~~~ 304 (368)
+..
T Consensus 247 ~~~ 249 (263)
T PLN02625 247 EVV 249 (263)
T ss_pred hhh
Confidence 544
No 10
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=1.2e-35 Score=280.78 Aligned_cols=215 Identities=20% Similarity=0.277 Sum_probs=178.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEcc
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSd 161 (368)
|||+||+|||||++||+||+++|++||+|+|++++ ..++..+..+++++..+++++.+..+.+++.+++|++|++++
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~--~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~g~~Vv~L~- 77 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTY--THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQAGHNVALIS- 77 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcH--HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHCCCeEEEEE-
Confidence 49999999999999999999999999999998653 477777776777887777766677777888899999999995
Q ss_pred CCCCCCCCcHHHHHHHhhhCC--CCEEEEcCccHHHHHHHhcCCCC-CcEEEEEec--CCCchhhHHHHHhhhcCCceEE
Q 017645 162 AGTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFL--PKHARSRTERLMLSANEVKTQI 236 (368)
Q Consensus 162 aGdP~isdpg~~Lv~~~~~~g--i~V~vIPGiSA~~aA~a~sGlp~-~~f~fvGfl--p~~~~~~~~~L~~l~~~~~tlV 236 (368)
.|||++|+.+.++++.+.+.+ ++|++|||+||+++|++++|+|+ ++|.+.+|. -..+....+.+..+++.+.|++
T Consensus 78 sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~~~~~~~~~~~~~~~a~~~~~~tlv 157 (241)
T PRK15478 78 SGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVIC 157 (241)
T ss_pred CCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecccCCCCcHHHHHhHHHHhcCCeEEE
Confidence 999999999999999887765 56999999999999999999998 788887762 1122222345677778889999
Q ss_pred EecCccc-----HHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 237 FYVPPHK-----LLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 237 lyesp~r-----l~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
|||++++ +.++++.+.++++++++++|++++|+++|+++++|++++... .... .++||+|+..
T Consensus 158 lym~~~~~~~~~l~~~~~ll~~g~~~~tPvaiv~~~t~~~q~~~~~tL~~l~~~----~~~~-~~liivG~~~ 225 (241)
T PRK15478 158 FYNPRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEKWLTTLGDMDFE----PVDM-TSLVIVGNKT 225 (241)
T ss_pred EECCcccccHHHHHHHHHHHHccCCCCCEEEEEEeCCCCCeEEEEEEHHHhhhc----CCCC-ceEEEECCee
Confidence 9999886 555566676778889999999999999999999999999752 3444 4788888765
No 11
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-34 Score=266.59 Aligned_cols=220 Identities=20% Similarity=0.299 Sum_probs=195.8
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEE
Q 017645 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (368)
Q Consensus 80 ~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Valv 159 (368)
..++||||.|||||++||+|+.+.|++||+|++.++.++..+|+.+..+.+++.-+..+.++..+.+++..++||+|+.+
T Consensus 2 ~~~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRL 81 (254)
T COG2875 2 AMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRL 81 (254)
T ss_pred CceEEEEccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEe
Confidence 46899999999999999999999999999999999999999999998888888777777888999999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEE---EecCCCchhhHHHHHhhhc
Q 017645 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFV---GFLPKHARSRTERLMLSAN 230 (368)
Q Consensus 160 SdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fv---Gflp~~~~~~~~~L~~l~~ 230 (368)
-+|||.||+--.+-++++.+.||+++++||+||+++|+|.+|..+. .+.+. |..|-+ ..+.|..++.
T Consensus 82 -hSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vp---e~e~l~~la~ 157 (254)
T COG2875 82 -HSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVP---EKESLAALAK 157 (254)
T ss_pred -ecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCC---chhHHHHHHh
Confidence 5999999999999999999999999999999999999999998763 22222 332222 3578888999
Q ss_pred CCceEEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 231 EVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 231 ~~~tlVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
++.|+++|-+-|.+.++.++|.. +|++++||+|+.+.|||+|++++|||+++.+...+.++.-. .+|+.|...
T Consensus 158 ~~aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~GTL~dIa~kv~~~~i~rT-AlIiVG~~l 231 (254)
T COG2875 158 HGATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLEDIAEKVKEAGIRRT-ALIIVGDVL 231 (254)
T ss_pred cCceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEEEeeHHHHHHHHHhcCceeE-EEEEEcccc
Confidence 99999999999999999999999 89999999999999999999999999999999987766554 677778754
No 12
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-33 Score=261.26 Aligned_cols=220 Identities=22% Similarity=0.262 Sum_probs=190.1
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCC------CcHHHHHHHHHHHHhC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~------~ne~~~~~~Ii~~l~~ 152 (368)
+.|++|+||.|||||++||+||+++|++||+|++ |..++..+|+.+..+++++...+ ..+++..+.+++..++
T Consensus 2 ~~GkV~lVGAGPGdp~LLTlka~~~L~~ADvvly-D~LV~~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a~~ 80 (244)
T COG0007 2 KPGKVYLVGAGPGDPGLLTLRALRALQEADVVLY-DRLVPEEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELARE 80 (244)
T ss_pred CcceEEEEecCCCChhhhhHHHHHHHhhCCEEEE-cCcCCHHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999 77899999998887777765433 3456777788888899
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchhhHHHHH
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLM 226 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~~~~~L~ 226 (368)
|+.|+.+ ..|||+||++|.+.++.+.+.||+++|+||+||.+++.+..|+|+. .|.|+ ..|..+-.-.|.
T Consensus 81 G~~VVRL-KgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~v---Tgh~~~~~~~w~ 156 (244)
T COG0007 81 GKRVVRL-KGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFV---TGHDRDGKLDWE 156 (244)
T ss_pred CCeEEEe-cCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEE---eCcCCCCCcChH
Confidence 9999999 6999999999999999999999999999999999999999999993 57776 333321114578
Q ss_pred hhhcCCceEEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 227 LSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 227 ~l~~~~~tlVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
.++....|+||||..+++.++.+.|.+ +++++++++++++.|.++|+++.|||+++.+.......+++ +|||+|+..
T Consensus 157 ~la~~~~TlVi~Mg~~~l~~i~~~Li~~G~~~~tpvAvi~~gt~~~Qr~~~gtL~~l~~~~~~~~~~~P-aiiviG~vv 234 (244)
T COG0007 157 ALARSVGTLVILMGASRLAEIARELIAHGRSPDTPVAVIENGTTPDQRVVVGTLGDLAELAEEAGLTPP-ALIVIGEVV 234 (244)
T ss_pred HhcccCCCEEEEeCcchHHHHHHHHHHcCCCCCCCEEEEEcCCCcceEEEEeEHHHHHHHHHhcCCCCC-EEEEEccee
Confidence 888899999999999999999999988 45778999999999999999999999999987665556666 777788765
No 13
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=100.00 E-value=1.4e-33 Score=258.38 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=160.3
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcC----CCCcEEEcCCCcHHHHHHHH--HHHHhCCCe
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN----IKTPLLSYHKFNESQREQTV--LNRLKQGEI 155 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~----i~~~~is~~~~ne~~~~~~I--i~~l~~Gk~ 155 (368)
|||+||+|||||++||+||+++|++||+|+|++ |+.+.+.+.+. ........ .....+..+.+ ++.+++|++
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~-r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~g~~ 78 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPE-RALEIVRDLLPEIFPMGKDRESL-EESYDEIAEIIEAIEAAKEGKD 78 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEET-TCHHHHHHHHHTEETTSSEEEEE-HHHHHHHHHHHHHHHHHHTTSE
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCcccccc-cchHHHHhhccccccccccccch-hhhhhHHHHHHHHHHHHhccCC
Confidence 699999999999999999999999999999975 65544444321 11111111 12245556667 788899999
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhh--CCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEec--CCCchhhHHHHHhhhcC
Q 017645 156 VALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATDEFTFVGFL--PKHARSRTERLMLSANE 231 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~--~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGfl--p~~~~~~~~~L~~l~~~ 231 (368)
|++++ .|||++|+++.++++.+.+ .|++|+++||+||+++|++++|+||+++.+..++ |.........+..+.+.
T Consensus 79 V~~l~-~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (210)
T PF00590_consen 79 VVVLV-SGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHGLRDLDTEREKLLENLLAN 157 (210)
T ss_dssp EEEEE-SBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEETSSSSHHHHHHHHHHHTT
T ss_pred EEEeC-CCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEEecccccchHHHHHHHHhC
Confidence 99995 9999999999999999998 9999999999999999999999999864333232 33333456788888888
Q ss_pred CceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHH
Q 017645 232 VKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAK 283 (368)
Q Consensus 232 ~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~ 283 (368)
.+|+|+|++++++.++++.|.+. .++++++++++++|+++|++++++++|+.
T Consensus 158 ~~~~vil~~~~~~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~ela 210 (210)
T PF00590_consen 158 GDTLVILTDPRRLAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEELA 210 (210)
T ss_dssp TSEEEEEESGCCHHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHHH
T ss_pred CCEEEEEccCchHHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHcC
Confidence 99999999999999999999886 46689999999999999999999999974
No 14
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=100.00 E-value=2.4e-32 Score=257.00 Aligned_cols=214 Identities=23% Similarity=0.225 Sum_probs=171.6
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccC
Q 017645 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (368)
Q Consensus 83 LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSda 162 (368)
||+||+|||||++||+||+++|++||+|+|+++ . .++++.+..+++++.++++++.+..+.+++.+.+|++|++++ .
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv~l~-~ 77 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT-Y-LDLIEDLIPGKEVVTSGMREEIARAELAIELAAEGRTVALVS-S 77 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc-H-HHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCCCCEEEEe-c
Confidence 699999999999999999999999999999853 3 356666654566666666665566677777788999999994 8
Q ss_pred CCCCCCCcHHHHHHHhhhCC--CCEEEEcCccHHHHHHHhcCCCC-CcEEEEEecC--CCchhhHHHHHhhhcCCceEEE
Q 017645 163 GTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLP--KHARSRTERLMLSANEVKTQIF 237 (368)
Q Consensus 163 GdP~isdpg~~Lv~~~~~~g--i~V~vIPGiSA~~aA~a~sGlp~-~~f~fvGflp--~~~~~~~~~L~~l~~~~~tlVl 237 (368)
|||++|+.+.++++.+.+.+ ++++++||+||+++|++++|+|| +++.++++.. .......+.+..+++.+.++++
T Consensus 78 GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~~~is~~~~~~~~~~~~~~l~~~~~~~~~~vl 157 (239)
T TIGR01466 78 GDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVISLSDLLTPWPEIEKRLRAAAEADFVIAI 157 (239)
T ss_pred CCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccccEEEECCCCCCCchHHHHHHHHHhCCCcEEEE
Confidence 99999999999999998765 59999999999999999999999 8888886532 1222223345556666788999
Q ss_pred ecC-----cccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 238 YVP-----PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 238 yes-----p~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
|+. |+++.++.+.|.+..+.++++++++++|+++|+++.++++++.+. ..+.++++++++..
T Consensus 158 ~~~~~~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~-----~~~~~s~iii~~~~ 224 (239)
T TIGR01466 158 YNPRSKRRPEQFRRAMEILLEHRKPDTPVGIVRNAGREGEEVEITTLAELDEE-----LIDMLTTVIIGNSE 224 (239)
T ss_pred ECCcccchhhhHHHHHHHHHhcCCCCCEEEEEEECCCCCeEEEEEEHHHHhhc-----CCCCCeEEEECCch
Confidence 986 357888888887766668999999999999999999999999653 24567888888754
No 15
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=100.00 E-value=2.4e-32 Score=255.74 Aligned_cols=211 Identities=25% Similarity=0.275 Sum_probs=165.5
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC-----cHHHHhhcCCC--CcEE--EcCCC-----c---HHHHH
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNIK--TPLL--SYHKF-----N---ESQRE 143 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~-----~~~LL~~~~i~--~~~i--s~~~~-----n---e~~~~ 143 (368)
|+||+||+|||||++||+||+++|++||+|++++++. ...++..+... ++++ .+... . ..+..
T Consensus 1 ~~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 5799999999999999999999999999999987543 23344444221 3332 12211 1 12445
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCc-EEEEEecCCCchhhH
Q 017645 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARSRT 222 (368)
Q Consensus 144 ~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~-f~fvGflp~~~~~~~ 222 (368)
+.+.+.+++|++|+++ ..|||++|+++.++++.+.+.|+++++|||+||+++|+|++|+||+. +.++++++.+.. .
T Consensus 81 ~~i~~~~~~g~~Vv~l-~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~~~~~~--~ 157 (230)
T TIGR01467 81 EAVAAELEEGRDVAFL-TLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILPATAG--E 157 (230)
T ss_pred HHHHHHHHCCCcEEEE-eCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEEeCCCC--H
Confidence 6677788889999999 48999999999999999998899999999999999999999999975 677777787753 2
Q ss_pred HHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeC
Q 017645 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301 (368)
Q Consensus 223 ~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g 301 (368)
..+........++|||++++++.++.+.|.+ .|.+.++++++++|+++|+++.+ +.++.+ ...++|+++++-
T Consensus 158 ~~~~~~~~~~~~vvil~~~~~~~~i~~~L~~-~g~~~~v~v~e~l~~~~E~i~~~-~~~~~~-----~~~~y~s~~i~~ 229 (230)
T TIGR01467 158 AELEKALAEFDTVVLMKVGRNLPQIKEALAK-LGRLDAAVVVERATMPDEKIVDL-VREAID-----DALPYFSTILVR 229 (230)
T ss_pred HHHHHHhccCCeEEEEecCCCHHHHHHHHHH-cCCcccEEEEEECCCCCcEEEcc-ccccCC-----CCCCeeEEEEec
Confidence 3466666778899999999999888877765 45566899999999999999986 666522 135889998863
No 16
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=4.9e-32 Score=278.02 Aligned_cols=219 Identities=21% Similarity=0.256 Sum_probs=174.7
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCC------CcHHHHHHHHHHHHhC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~------~ne~~~~~~Ii~~l~~ 152 (368)
|.|+||+||+|||||++||+||+++|++||+|++ |......++++.....+++...+ ..+++..+.+++.+++
T Consensus 1 m~G~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvy-drlv~~~~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~a~~ 79 (474)
T PRK07168 1 MNGYVYLVGAGPGDEGLITKKAIECLKRADIVLY-DRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKE 79 (474)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhCCEEEE-eCcCCHHHHhhcCCCcEEEeccCcCCCccccHHHHHHHHHHHHhC
Confidence 3489999999999999999999999999999999 55555555665544444443222 1233444567788889
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchhh---HH
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---TE 223 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~~---~~ 223 (368)
|++|+++ ..|||++|+++.++++++.+.|+++++|||+||+++|++++|+|+. +|.|+ +.|.+.. ..
T Consensus 80 Gk~VvrL-~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~vi---T~h~~~~~~~~~ 155 (474)
T PRK07168 80 GKIVVRL-KGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLL---TGHAKGPLTDHG 155 (474)
T ss_pred CCEEEEE-eCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEE---ccCcCCccccch
Confidence 9999999 6999999999999999999999999999999999999999999994 66665 4443211 12
Q ss_pred HHHhhhcCCceEEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 224 ~L~~l~~~~~tlVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
.+..+. ...|+|||+..+++.++.+.|.+ ++++++++++++++|+++|+++.+|++++.+.........+ ++||+|.
T Consensus 156 ~~~~l~-~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~~~~~p-avivvG~ 233 (474)
T PRK07168 156 KYNSSH-NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNP-SMTIVGD 233 (474)
T ss_pred hHHHhc-CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCC-EEEEECh
Confidence 344454 45699999999999999998887 46678999999999999999999999999887766666565 6777786
Q ss_pred Cc
Q 017645 303 AI 304 (368)
Q Consensus 303 ~~ 304 (368)
..
T Consensus 234 vv 235 (474)
T PRK07168 234 VV 235 (474)
T ss_pred Hh
Confidence 54
No 17
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=100.00 E-value=9.4e-32 Score=248.30 Aligned_cols=219 Identities=24% Similarity=0.285 Sum_probs=189.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEE
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (368)
|.|+||+||+||||+++||++|.++|++||+|++..++. ++++ +..+++++...+..|-++++..++.+++|++||+
T Consensus 1 ~~G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~--d~i~-l~~~k~v~~s~m~~Ei~Ra~~AielA~~G~~Val 77 (249)
T COG1010 1 MTGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYL--DLIE-LRPGKEVIRSGMREEIERAKEAIELAAEGRDVAL 77 (249)
T ss_pred CCceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHH--HHHh-cCCCCEEEeCCcHhHHHHHHHHHHHHhcCCeEEE
Confidence 468999999999999999999999999999999998766 5666 5557888888888889999999999999999999
Q ss_pred EccCCCCCCCCcHHHHHHHhhhCC---CCEEEEcCccHHHHHHHhcCCCC-CcEEEEEe--cCCCchhhHHHHHhhhcCC
Q 017645 159 ISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLAT-DEFTFVGF--LPKHARSRTERLMLSANEV 232 (368)
Q Consensus 159 vSdaGdP~isdpg~~Lv~~~~~~g---i~V~vIPGiSA~~aA~a~sGlp~-~~f~fvGf--lp~~~~~~~~~L~~l~~~~ 232 (368)
|| .|||+||+-...+++.+.+.| ++|+++||+||+++|+|++|-|+ ++|+.+.+ +=.++....+.+...+..+
T Consensus 78 VS-sGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~IekRl~aAA~ad 156 (249)
T COG1010 78 VS-SGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEVIEKRLRAAAEAD 156 (249)
T ss_pred Ee-CCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHHHHHHHHHHHhhCC
Confidence 98 899999998888888877654 89999999999999999999999 68999853 2234444567788888899
Q ss_pred ceEEEecC-----cccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCcC
Q 017645 233 KTQIFYVP-----PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAIC 305 (368)
Q Consensus 233 ~tlVlyes-----p~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~~ 305 (368)
-.++||+. |+.+.+.++.|.++.+++++|.++++.+.++|++...|++++.+. +.-.+.++||+|+.++
T Consensus 157 fVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnagR~~e~v~ittL~~l~~~----~~iDM~T~vIIGns~T 230 (249)
T COG1010 157 FVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAGREGEEVRITTLGDLDEA----EEIDMRTIVIIGNSET 230 (249)
T ss_pred EEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCCCCCceEEEEEhHHhccc----ccccceEEEEEcCCce
Confidence 99999976 445778888888888889999999999999999999999999851 2467889999998864
No 18
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=1.1e-31 Score=254.89 Aligned_cols=216 Identities=19% Similarity=0.251 Sum_probs=165.1
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHH--HHHHHHHHHHhCCCeE
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES--QREQTVLNRLKQGEIV 156 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~--~~~~~Ii~~l~~Gk~V 156 (368)
|.|+||+||+|||||++||+||+++|++||+|++.+ ++++.+........++..+.. .....+++.+.+|++|
T Consensus 1 m~~~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 75 (250)
T PRK05991 1 MSGRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYG-----PYLDRLPLRADQLRHASDNREELDRAGAALAMAAAGANV 75 (250)
T ss_pred CCceEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcH-----HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHCCCeE
Confidence 358899999999999999999999999999999963 234444321111122223222 2223346666789999
Q ss_pred EEEccCCCCCCCCcHHHHHHHhhh-----CCCCEEEEcCccHHHHHHHhcCCCC-CcEEEEEecCCCc--hhhHHHHHhh
Q 017645 157 ALISDAGTPGISDPGTELAKLCVD-----EKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKHA--RSRTERLMLS 228 (368)
Q Consensus 157 alvSdaGdP~isdpg~~Lv~~~~~-----~gi~V~vIPGiSA~~aA~a~sGlp~-~~f~fvGflp~~~--~~~~~~L~~l 228 (368)
++++ .|||++|+.+.++.+.+.+ .|++|+++|||||+++|+|++|+|| ++|.++++.+... ....+.+..+
T Consensus 76 v~l~-~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~~~s~~~~~~~~~~l~~~l~~~ 154 (250)
T PRK05991 76 CVVS-GGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFCAISLSDNLKPWELIEKRLRLA 154 (250)
T ss_pred EEEe-CCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCEEeecccCCCCHHHHHHHHHhh
Confidence 9995 8999999999999888874 3689999999999999999999999 5788886543221 1223445555
Q ss_pred hcCCceEEEec-----CcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCC
Q 017645 229 ANEVKTQIFYV-----PPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (368)
Q Consensus 229 ~~~~~tlVlye-----sp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~ 303 (368)
...+.++|||+ .|+++.+.++.|.+.+.++.++++++++|+++|+++.+++.++.+. ..+.+++|+.|..
T Consensus 155 ~~~~~~~vl~~~~~~~~p~~l~~~~~~L~~~~~~~~~v~v~~~lg~~dE~i~~~~l~el~~~-----~~~~~s~vivg~~ 229 (250)
T PRK05991 155 AEAGFVIALYNPISRARPWQLGEAFDLLREHLPATVPVIFGRAAGRPDERIAVAPLAEADAS-----MADMATCVIIGSA 229 (250)
T ss_pred cCCCeEEEEECCccccchhhHHHHHHHHHhcCCCCCEEEEEEeCCCCCcEEEEEEHHHhhhh-----ccCCCeEEEECCC
Confidence 66688899994 4567888788887776678999999999999999999999999753 2467899999987
Q ss_pred cC
Q 017645 304 IC 305 (368)
Q Consensus 304 ~~ 305 (368)
.+
T Consensus 230 ~~ 231 (250)
T PRK05991 230 ET 231 (250)
T ss_pred cc
Confidence 64
No 19
>PRK10637 cysG siroheme synthase; Provisional
Probab=100.00 E-value=9.9e-32 Score=275.36 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=177.8
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEE------cCCCcHHHHHHHHHHHHhC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLKQ 152 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is------~~~~ne~~~~~~Ii~~l~~ 152 (368)
.+|+||+||+|||||++||+||+++|++||+|++ ++++...+++.+....+.+. ++.++.++..+.+.+.+.+
T Consensus 214 ~~g~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 292 (457)
T PRK10637 214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVY-DRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQK 292 (457)
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHcCCEEEE-CCCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHHhC
Confidence 4699999999999999999999999999999999 67887777665543333222 3334556667788888899
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEEEecCCCchh-hHHHH
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARS-RTERL 225 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fvGflp~~~~~-~~~~L 225 (368)
|++|++++ .|||++|+++.++++++.+.|+++++||||||+++|+|++|+|| +++.|+ +.|.+. ....+
T Consensus 293 G~~Vv~L~-sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vi---s~h~~~~~~~~~ 368 (457)
T PRK10637 293 GKRVVRLK-GGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLV---TGHLKTGGELDW 368 (457)
T ss_pred CCEEEEEe-CCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEE---eCccCCCCccCH
Confidence 99999995 99999999999999999999999999999999999999999999 455554 444321 11235
Q ss_pred HhhhcCCceEEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 226 MLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 226 ~~l~~~~~tlVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
..++...+|+|||+.++++.++++.|.+ ++++++++++++++|+++|++++++++++.+...+ .+..++|++|+..
T Consensus 369 ~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~---~~~~~viiig~~~ 445 (457)
T PRK10637 369 ENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSGTLTQLGELAQQ---VNSPSLIIVGRVV 445 (457)
T ss_pred HHHhCCCCeEEEECCHhhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHhc---CCCCEEEEEChhh
Confidence 6677888999999999999999998875 46668899999999999999999999999875432 3455888888654
No 20
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=100.00 E-value=1.2e-31 Score=251.14 Aligned_cols=208 Identities=18% Similarity=0.244 Sum_probs=160.2
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH-----HHHhhc-CCCCcEEEc----CCCcH------HHHHH
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG-----KLLQYY-NIKTPLLSY----HKFNE------SQREQ 144 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~-----~LL~~~-~i~~~~is~----~~~ne------~~~~~ 144 (368)
|+||+||+|||||++||+||+++|++||+|+|+++|.+. .++..+ +.+++++.+ +.+.+ ++..+
T Consensus 2 ~~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (229)
T PRK05576 2 GKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENAE 81 (229)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHHH
Confidence 789999999999999999999999999999998765442 234433 223344332 22221 24456
Q ss_pred HHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC-cEEEEEecCCCchhhHH
Q 017645 145 TVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSRTE 223 (368)
Q Consensus 145 ~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~-~f~fvGflp~~~~~~~~ 223 (368)
.+.+.+.+|++|+++ ..|||++|+.+.++++.+.+.|++++++||+||+++|+|++|+||+ .+....++|.+. .+
T Consensus 82 ~i~~~~~~g~~V~~l-~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~~~---~~ 157 (229)
T PRK05576 82 EIAAEAEEGKNVAFI-TLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPATR---EA 157 (229)
T ss_pred HHHHHHHcCCcEEEE-eCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEECCC---HH
Confidence 677777899999999 5999999999999999998889999999999999999999999998 222233446664 24
Q ss_pred HHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 224 ~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
.+.......+++|+|+..++...+.+.|.+ . +.+++++++||+++|+++++++.++. ..+++++|+..+
T Consensus 158 ~l~~~l~~~~~~vl~~~~~~~~~i~~~l~~-~--~~~v~v~e~l~~~~E~i~~~~~~~~~-------~~~y~s~ii~~~ 226 (229)
T PRK05576 158 LIEQALTDFDSVVLMKVYKNFALIEELLEE-G--YLDALYVRRAYMEGEQILRRLEEILD-------DLDYFSTIIANR 226 (229)
T ss_pred HHHHHhhcCCEEEEEecCCCHHHHHHHHHh-c--CCCEEEEEECCCCCeEEEccccccCC-------CCCeeEEEEEec
Confidence 455556677899999887777776655544 2 34999999999999999998877652 258899999754
No 21
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.98 E-value=4.4e-31 Score=243.10 Aligned_cols=206 Identities=21% Similarity=0.194 Sum_probs=153.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCC-CCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEc
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI-KTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i-~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvS 160 (368)
|||+||+|||||++||+||+++|++||+|++++ |. .+++..+.. ++..+..+. ++..+.+. .+.+|++|++++
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~-~~-~~~~~~~~~~~~~~~~~~~---~~~~~~i~-~~~~g~~V~~l~ 74 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK-RV-LELFPELIDGEAFVLTAGL---RDLLEWLE-LAAKGKNVVVLS 74 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH-hH-HHHHHHhccCccEEecCCH---HHHHHHHH-HhhCCCcEEEEe
Confidence 599999999999999999999999999999964 44 344444432 233443332 23334443 567899999995
Q ss_pred cCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecC
Q 017645 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVP 240 (368)
Q Consensus 161 daGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyes 240 (368)
.|||++|+.++.+.+.+.. +++++++||+||+++|++++|+||+++.|+++..+.... +.+..+.+...++++|..
T Consensus 75 -~GDP~~~~~~~~~~~~~~~-~~~veviPGiSs~~aaaa~~g~~l~~~~~is~~~~~~~~--~~l~~~~~~~~~~v~l~~ 150 (210)
T PRK05787 75 -TGDPLFSGLGKLLKVRRAV-AEDVEVIPGISSVQYAAARLGIDMNDVVFTTSHGRGPNF--EELEDLLKNGRKVIMLPD 150 (210)
T ss_pred -cCCccccccHHHHHHHhcc-CCCeEEEcCHHHHHHHHHHhCCCHHHcEEEeecCCCcch--HHHHHHHHcCCeEEEEcC
Confidence 9999999998888776543 489999999999999999999999999888664433221 235555545666777764
Q ss_pred c-ccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 241 P-HKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 241 p-~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
+ +++.++.+.|.+...+++++++++++|+++|+++.++++++... ..+.+++++..+
T Consensus 151 ~~~~~~~i~~~L~~~g~~~~~~~v~~~l~~~~E~i~~~~l~~~~~~-----~~~~~s~v~v~~ 208 (210)
T PRK05787 151 PRFGPKEIAAELLERGKLERRIVVGENLSYPDERIHKLTLSEIEPL-----EFSDMSVVVILD 208 (210)
T ss_pred CCCCHHHHHHHHHhCCCCCcEEEEEEeCCCCCeEEEeCCHHHHhhc-----ccCCcEEEEEec
Confidence 4 46777777776632268999999999999999999999887542 246777777654
No 22
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.97 E-value=8.8e-30 Score=234.47 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=145.2
Q ss_pred EEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhc-CCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCC
Q 017645 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAG 163 (368)
Q Consensus 85 iVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~-~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaG 163 (368)
|||+|||||++||+||+++|++||+|+++ .|... ++..+ +.+...+ .+..+.++..+.+.+.+. |++|++++ .|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~-g~~vv~l~-~G 75 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGG-ERHLE-LLAELIGEKREII-LTYKDLDELLEFIAATRK-EKRVVVLA-SG 75 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEec-hhhHH-HHhhhcCCceEec-cCcCCHHHHHHHHHHhcC-CCCEEEEe-cC
Confidence 69999999999999999999999999996 45543 33433 2222222 223455666777777665 99999995 99
Q ss_pred CCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCccc
Q 017645 164 TPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHK 243 (368)
Q Consensus 164 dP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~r 243 (368)
||++|+++.++++.+.+ .+|++|||+||+++|++++|+||+++.|+++.++.... ..+..+...+.++|++...+.
T Consensus 76 DP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~--~~~~~l~~~~~~vvl~~~~~~ 151 (204)
T TIGR02467 76 DPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDE--LLLALLRGHRKVAVLTDPRNG 151 (204)
T ss_pred CCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcH--HHHHHHhcCCcEEEEeCCCCC
Confidence 99999999999998865 47999999999999999999999999998775543221 134445555544444443356
Q ss_pred HHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHH
Q 017645 244 LLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEA 285 (368)
Q Consensus 244 l~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~ 285 (368)
..++.+.|.+ ++++.+++++++++|+++|++++++++++.+.
T Consensus 152 ~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~ 194 (204)
T TIGR02467 152 PAEIARELIELGIGGSYELTVGENLGYEDERITEGTLEEIAAA 194 (204)
T ss_pred HHHHHHHHHHCCCCCCeEEEEEcccCCCCeEEEeCCHHHHhhc
Confidence 6777777665 35544499999999999999999999999753
No 23
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=99.97 E-value=2.9e-29 Score=236.95 Aligned_cols=212 Identities=19% Similarity=0.213 Sum_probs=160.8
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC-----cHHHHhhc-CCCCcEEE--cCCCcH--------HHH
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYY-NIKTPLLS--YHKFNE--------SQR 142 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~-----~~~LL~~~-~i~~~~is--~~~~ne--------~~~ 142 (368)
..|+||+||+|||||++||+||+++|++||+|+++.... ...+++.+ ..+++++. |++..+ ++.
T Consensus 2 ~~g~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~ 81 (238)
T PRK05948 2 TLGTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAA 81 (238)
T ss_pred CCCEEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHH
Confidence 468999999999999999999999999999999975432 23445544 32333432 333221 234
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhh--CCCCEEEEcCccHHHHHHHhcCCCCC----cEEEEEecCC
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLPK 216 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~--~gi~V~vIPGiSA~~aA~a~sGlp~~----~f~fvGflp~ 216 (368)
++.+.+.+.+|++|+++ ..|||++|+.+.++.+.+++ .|++|++|||+||+++|+|++|+|+. .+.++ |.
T Consensus 82 ~~~i~~~~~~g~~v~~l-~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii---~~ 157 (238)
T PRK05948 82 ADQVWHYLEQGEDVAFA-CEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAIL---PA 157 (238)
T ss_pred HHHHHHHHHcCCeEEEE-eCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEE---cC
Confidence 57788889999999999 59999999999999999887 48999999999999999999999995 45554 76
Q ss_pred CchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEE
Q 017645 217 HARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEIT 296 (368)
Q Consensus 217 ~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~v 296 (368)
+.. ...++..+....++|++..++.+.++.+.|.+ .+...++++++++|+++|++++ ++.++... ..++|+
T Consensus 158 ~~~--~~~l~~~l~~~~~vVlmk~~~~~~~i~~~L~~-~g~~~~~~vv~~~~~~~E~i~~-~l~~~~~~-----~~~Y~S 228 (238)
T PRK05948 158 LYH--LEELEQALTWADVVVLMKVSSVYPQVWQWLKA-RNLLEQASLVERATTPEQVIYR-NLEDYPDL-----RLPYFS 228 (238)
T ss_pred CCC--HHHHHHHHhCCCEEEEEECCccHHHHHHHHHh-CCCCCCEEEEEECCCCCcEEEe-ehhhcCcC-----CCCceE
Confidence 643 23455555566788888877777888877765 3333468999999999999987 55554321 367999
Q ss_pred EEEeCCC
Q 017645 297 VLVEGKA 303 (368)
Q Consensus 297 lvi~g~~ 303 (368)
++++.+.
T Consensus 229 ~iiv~~~ 235 (238)
T PRK05948 229 LLIIQKR 235 (238)
T ss_pred EEEEcCC
Confidence 9998654
No 24
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=99.97 E-value=5e-29 Score=237.84 Aligned_cols=215 Identities=18% Similarity=0.168 Sum_probs=155.9
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH------HHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCe
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG------KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~------~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ 155 (368)
+||+||+||||+++||+||+++|++||+|++++ ..+. ..+..+ ..++.........++..+.+++.+++ ++
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~-~~s~l~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~ii~~~~~-~~ 77 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEF-YTSKLLGSSIEEIEEF-FGKRVVVLERSDVEENSFRLIERAKS-KD 77 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEec-cchhhccccHHHHHHH-hCCcccccCHHHHHHHHHHHHHHhcC-CC
Confidence 599999999999999999999999999999963 2221 112222 12332222211122345677887754 89
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcE---EEEEecCCCch---hhHHHHHhhh
Q 017645 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHAR---SRTERLMLSA 229 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f---~fvGflp~~~~---~~~~~L~~l~ 229 (368)
|++++ .|||++|+++.+++.++.+.|++|++|||+||+++|++.+|+|+.+| .-+-|...|.+ .....++++.
T Consensus 78 Vv~l~-~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~ 156 (257)
T TIGR00522 78 VALLV-AGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRK 156 (257)
T ss_pred EEEEE-CCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHh
Confidence 99995 99999999999999999999999999999999999999999999742 11223344432 1234567777
Q ss_pred cCCceEEEe---------cCcccHHHHHHHH----HH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcE
Q 017645 230 NEVKTQIFY---------VPPHKLLQFLEET----SL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (368)
Q Consensus 230 ~~~~tlVly---------esp~rl~~~l~~L----~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~ 295 (368)
...+|+||| |++++..+.+..+ .+ ++++++++++++++|+++|+++.||++++.+.. .. ....
T Consensus 157 ~~~~Tlvll~~~~~~~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~de~i~~gtl~~l~~~~--~~-~~~~ 233 (257)
T TIGR00522 157 IGLHTLVLLDIHPKENRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIENLKNYD--FG-EPLH 233 (257)
T ss_pred cCCCcEEEEecccCcccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCCCceEEEEEHHHHHhcc--cC-CCCe
Confidence 778899998 4444443333333 22 356799999999999999999999999998752 11 2345
Q ss_pred EEEEeCCC
Q 017645 296 TVLVEGKA 303 (368)
Q Consensus 296 vlvi~g~~ 303 (368)
++||.|+.
T Consensus 234 alii~g~~ 241 (257)
T TIGR00522 234 CLVVLAKT 241 (257)
T ss_pred EEEEeCCC
Confidence 88888863
No 25
>PTZ00175 diphthine synthase; Provisional
Probab=99.97 E-value=1.8e-28 Score=235.28 Aligned_cols=212 Identities=21% Similarity=0.253 Sum_probs=157.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc-------HHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCC
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~-------~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk 154 (368)
+||+||+|||||++||+||+++|++||+|++++ .++ +.+...++ ++.+..+++..++..+.+++.++ ++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~-~ts~l~~~~~~~l~~~~g--k~~~~~~r~~~e~~~~~ii~~a~-~~ 77 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLES-YTSILINSNKEKLEEFYG--KPVIEADREMVEEGCDEILEEAK-EK 77 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEec-ccchhccCCHHHHHHhcC--CeeEecCccCHHHHHHHHHHHhC-CC
Confidence 699999999999999999999999999999974 322 22222332 44444454444455667888876 68
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEE---EEEecCCCc---hhhHHHHHhh
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT---FVGFLPKHA---RSRTERLMLS 228 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~---fvGflp~~~---~~~~~~L~~l 228 (368)
+|++++ .|||++|+++.+++.++++.|++|++|||+|++ +|++.+|++..+|- -+-|...++ ......++++
T Consensus 78 ~Vv~L~-~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~-sA~~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~ 155 (270)
T PTZ00175 78 NVAFLV-VGDPFCATTHTDLYLRAKKKGIEVEVIHNASIM-NAIGCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANR 155 (270)
T ss_pred CEEEEE-CCCCCccCCHHHHHHHHHHCCCcEEEECCcCHH-HHHhhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHH
Confidence 899995 999999999999999999999999999999955 55588999997531 111222322 2223478888
Q ss_pred hcCCceEEE------------------------ecCcccHHHHHHHHHH-----HhCCCceeeeecccCCCccEEEEeeh
Q 017645 229 ANEVKTQIF------------------------YVPPHKLLQFLEETSL-----LFGYSRRCVIAREITKMHEEFWRGTL 279 (368)
Q Consensus 229 ~~~~~tlVl------------------------yesp~rl~~~l~~L~~-----~~g~~~~v~v~~eLtk~~E~i~~gtl 279 (368)
....+|+++ ||+++...+.+..+.+ .++++++++++.++|+++|+++.|++
T Consensus 156 ~~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~~~q~i~~gtL 235 (270)
T PTZ00175 156 DNGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQIVSGTL 235 (270)
T ss_pred HcCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCCCCceEEEEEH
Confidence 899999999 7775544444433332 36778999999999999999999999
Q ss_pred hhHHHHHHhCCCCCcEEEEEeCC
Q 017645 280 GEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 280 ~el~~~~~~~~~kge~vlvi~g~ 302 (368)
+++.+.- -.....++||.|+
T Consensus 236 ~~l~~~d---~g~PlhsLIv~g~ 255 (270)
T PTZ00175 236 EDLLDVD---FGPPLHSLVICAP 255 (270)
T ss_pred HHHhhcc---cCCCCEEEEEECC
Confidence 9996531 1123348999886
No 26
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.96 E-value=4.8e-28 Score=228.95 Aligned_cols=211 Identities=18% Similarity=0.147 Sum_probs=150.2
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC----cHHHHh-hcCCCCcEEE--c--CCCc------------
Q 017645 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH----SGKLLQ-YYNIKTPLLS--Y--HKFN------------ 138 (368)
Q Consensus 80 ~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~----~~~LL~-~~~i~~~~is--~--~~~n------------ 138 (368)
+|+||+||+|||||++||+||+++|++||+|+++..+. ...+++ ++..+++++. + .++.
T Consensus 2 ~g~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~ 81 (241)
T PRK05990 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIA 81 (241)
T ss_pred CceEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHcCCCceEEEeecCCccccccccchhhhHHH
Confidence 48999999999999999999999999999999964321 235665 3333333321 2 1110
Q ss_pred --HHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC-cEEEEEecC
Q 017645 139 --ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLP 215 (368)
Q Consensus 139 --e~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~-~f~fvGflp 215 (368)
.++..+.+.+.+++|++|+++ ..|||++|+++.++++.+. .++++++|||+||+++|+|++|+|+. +...+.++|
T Consensus 82 ~~~~~~~~~i~~~~~~G~~Vv~L-~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i~~ 159 (241)
T PRK05990 82 DFYDTSAEAVAAHLDAGRDVAVI-CEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLS 159 (241)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEE-eCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEEEc
Confidence 033456788889999999999 5999999999999988874 58999999999999999999999994 222222345
Q ss_pred CCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcE
Q 017645 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (368)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~ 295 (368)
.+... ....+.+...+.++++ +..+++.++.+.|.+. +...++++++++|+++|+++. ..++.. ...++|
T Consensus 160 ~~~~~-~~l~~~l~~~~~~vv~-k~~~~~~~i~~~L~~~-g~~~~~~~v~~~~~~~E~i~~--~~~~~~-----~~~~Y~ 229 (241)
T PRK05990 160 GVLPE-EELRRRLADADAAVIM-KLGRNLDKVRRVLAAL-GLLDRALYVERATMANQRIVP--LAEVDP-----MASPYF 229 (241)
T ss_pred CCCCh-HHHHHHHhCCCCEEEE-EeCCcHHHHHHHHHHc-CCCCCEEEEEECCCCCeEEEE--ccccCC-----CCCCce
Confidence 54322 2333444444445444 4458888888888763 333356777999999999985 333322 136899
Q ss_pred EEEEeCC
Q 017645 296 TVLVEGK 302 (368)
Q Consensus 296 vlvi~g~ 302 (368)
+++++.+
T Consensus 230 s~iiv~~ 236 (241)
T PRK05990 230 SLILVPG 236 (241)
T ss_pred EEEEEec
Confidence 9999854
No 27
>PRK04160 diphthine synthase; Provisional
Probab=99.96 E-value=5.6e-28 Score=230.43 Aligned_cols=211 Identities=20% Similarity=0.273 Sum_probs=148.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCC------CcHHHHhhcCCCCcEEEcCCCcHHHHHHHHH-HHHhCCC
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTR------HSGKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGE 154 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR------~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii-~~l~~Gk 154 (368)
+||+||+|||||++||+||+++|++||+|++++.. ....+.+..+ ++.+..+....++..+.++ +.. .++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTTIEKLEELIG--KEIIVLDREDVEQESEKIILEEA-KEK 77 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCccccccHHHHHHHhC--CceeecCHHHHHHHHHHHHHHHH-cCC
Confidence 49999999999999999999999999999996532 1112222222 2333332223344455555 444 458
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcE----EEE----EecCCCchhhHHHHH
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF----TFV----GFLPKHARSRTERLM 226 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f----~fv----Gflp~~~~~~~~~L~ 226 (368)
+|++++ .|||++|+++.++++.+++.|++|++|||+||+++|+|++|+|...| ++. ++.+. ......++
T Consensus 78 ~Vv~L~-sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~--~~~~~i~~ 154 (258)
T PRK04160 78 NVAFLT-AGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPE--SPYDVIKD 154 (258)
T ss_pred CEEEEe-CCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCC--CHHHHHHH
Confidence 999995 99999999999999999999999999999999999999999997654 111 22221 11223445
Q ss_pred hhhcCCceEEEe--------cCcccHHHHHHHH----HH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCC-
Q 017645 227 LSANEVKTQIFY--------VPPHKLLQFLEET----SL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPK- 292 (368)
Q Consensus 227 ~l~~~~~tlVly--------esp~rl~~~l~~L----~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~k- 292 (368)
.+.+..++++|+ +.++.+.+.+.++ .+ .++++++++|++++|+++|+++.|+++++.+. +..
T Consensus 155 ~~~~~~~~~vll~~~~~~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~~~E~i~~~tl~~l~~~----~f~~ 230 (258)
T PRK04160 155 NLERGLHTLVLLDIKADGRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVVRAGRLEELADY----DFGG 230 (258)
T ss_pred HHhcCCCcEEEEEeccCCcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCCCCceEEEccHHHHhhC----CCCC
Confidence 566666788885 4555555555432 22 24568999999999999999999999998543 222
Q ss_pred CcEEEEEeCC
Q 017645 293 GEITVLVEGK 302 (368)
Q Consensus 293 ge~vlvi~g~ 302 (368)
...++++.|+
T Consensus 231 ~~~~~ii~~~ 240 (258)
T PRK04160 231 PLHILIIPGK 240 (258)
T ss_pred CCEEEEEeCC
Confidence 3556666554
No 28
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.95 E-value=6.1e-27 Score=218.71 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=159.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCC----CCcHHHHhhcCC-CCcEEE--cCCCc---------HHHHH
Q 017645 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDT----RHSGKLLQYYNI-KTPLLS--YHKFN---------ESQRE 143 (368)
Q Consensus 80 ~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edt----R~~~~LL~~~~i-~~~~is--~~~~n---------e~~~~ 143 (368)
+++||.||+|||||++||+||+++|++||+|+.+.. +.++.+++.|-. +..... |.+.. .++.+
T Consensus 1 ~~klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a 80 (234)
T COG2243 1 MGKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAA 80 (234)
T ss_pred CCeEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHH
Confidence 378999999999999999999999999999999832 234567776643 222222 22211 13456
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC----cEEEEEecCCCch
Q 017645 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLPKHAR 219 (368)
Q Consensus 144 ~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~----~f~fvGflp~~~~ 219 (368)
+.|...+.+|++||+++ -|||++||+..+|.+++...|+++++|||+||+++++|++|+|+. .+.++ |....
T Consensus 81 ~~va~~l~~G~~VAf~~-lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vl---p~t~~ 156 (234)
T COG2243 81 AEVAAELEAGRDVAFLT-LGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVL---PATRP 156 (234)
T ss_pred HHHHHHHHcCCeEEEEE-ccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEE---eccCc
Confidence 77888899999999995 899999999999999999999999999999999999999999994 23444 65542
Q ss_pred hhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEE
Q 017645 220 SRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV 299 (368)
Q Consensus 220 ~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi 299 (368)
...++......+++|+++.+.+..++-+ +...++.....++++++|+.+|+|++ +.+.... .++.|++++
T Consensus 157 --~~~~~~~l~~~d~~VvMK~~~~~~~i~~-~l~~~g~~~~~~~v~R~~m~~e~i~~--l~~~~~~-----~~~Yfs~ii 226 (234)
T COG2243 157 --DEELERALADFDTAVVMKVGRNFEKLRR-LLAKLGLLDRAVYVERATMAGEKIVR--LAEAERD-----EKPYFSTIL 226 (234)
T ss_pred --hhhHHhHHhhCCeEEEEecCCcHHHHHH-HHHhcCCCceEEEEeecCCCCcEEEe--ccccCcc-----cCCceEEEE
Confidence 3445555566789999998775555444 44445656677799999999999997 4444332 248999998
Q ss_pred eCCC
Q 017645 300 EGKA 303 (368)
Q Consensus 300 ~g~~ 303 (368)
..+.
T Consensus 227 ~~r~ 230 (234)
T COG2243 227 VRRK 230 (234)
T ss_pred Eecc
Confidence 7654
No 29
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.95 E-value=8.4e-27 Score=221.93 Aligned_cols=193 Identities=14% Similarity=0.152 Sum_probs=142.2
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcC--CCCcEEEcC--CCcH---------
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLSYH--KFNE--------- 139 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~--------~~LL~~~~--i~~~~is~~--~~ne--------- 139 (368)
.+||+||+|||||++||+||+++|++||+|+++++... .++++.+- .+.+++.++ +.+.
T Consensus 2 ~kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 2 RRLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred cEEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 47999999999999999999999999999999875322 23344332 234444443 2111
Q ss_pred --------HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhC---CCCEEEEcCccHHHHHHHhcCCCCCc-
Q 017645 140 --------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASAFVAALSASGLATDE- 207 (368)
Q Consensus 140 --------~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~---gi~V~vIPGiSA~~aA~a~sGlp~~~- 207 (368)
+...+.|.+.+.+|++|+++ ..|||++|+.+.++.+.+.+. |+++++|||+||+++|++++|+|+..
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l-~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~ 160 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFL-VWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRI 160 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEE-eCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcC
Confidence 11135688888999999999 599999999999999999864 89999999999999999999999964
Q ss_pred ---EEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHH
Q 017645 208 ---FTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKE 284 (368)
Q Consensus 208 ---f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~ 284 (368)
+.++ |.+. .. ..+.....++|+|..++...+. |. ..+.++++++++|+++|+++++++.++.+
T Consensus 161 ~~~l~ii---~g~~--l~---~~l~~~~~~vvv~k~~~~~~~~---L~---~~~~~v~v~e~l~~p~E~I~~~~l~ei~~ 226 (253)
T PRK08284 161 GEPVHIT---TGRR--LA---EGWPAGVDNVVVMLDGECSFRR---LD---DPDLEIWWGAYLGTPDEILIAGPLAEVAE 226 (253)
T ss_pred CceEEEE---ecCc--hH---HHHHhcCCcEEEEECCcCCHHH---Hc---CCCCEEEEEecCCCCCeEEEEccHHHHHH
Confidence 3443 4432 11 1233444567766665533322 22 24679999999999999999999999988
Q ss_pred HHHh
Q 017645 285 AFSS 288 (368)
Q Consensus 285 ~~~~ 288 (368)
...+
T Consensus 227 ~~~~ 230 (253)
T PRK08284 227 EILR 230 (253)
T ss_pred HHHH
Confidence 7643
No 30
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.95 E-value=6.1e-27 Score=216.02 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=149.9
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEcc
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSd 161 (368)
++|+||+||||++.||.+|+++|++||+|++. .|+. .++..+ +.++.+.+....+.+..+.+....+ |++|+++ .
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~-kr~L-~~~~~~-~~~~~~~~~~~~~~~~l~~i~~~~~-g~~v~VL-a 75 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGS-KRHL-ELLPPL-IKAERIIWPYPFDAESLEEILAERK-GRDVVVL-A 75 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeec-HHHH-Hhhhcc-ccceEEEeccccchHHHHHHHHHhC-CCCeEEE-e
Confidence 58999999999999999999999999999996 4552 223322 2344554444444445566665544 8999999 5
Q ss_pred CCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCc
Q 017645 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPP 241 (368)
Q Consensus 162 aGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp 241 (368)
.|||++|+-|..+.+.+.. -+|++||||||+|+|+|++|++|+++.|+.+.+++ .+.+..+...+..+++..+-
T Consensus 76 sGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~----~~~l~~~~~~~~~~vil~~~ 149 (210)
T COG2241 76 SGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQDTEVISLHGRP----VELLRPLLENGRRLVILTPD 149 (210)
T ss_pred cCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHHeEEEEecCCC----HHHHHHHHhCCceEEEeCCC
Confidence 9999999999999887765 47899999999999999999999999998655333 34555555555555555432
Q ss_pred -ccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 242 -HKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 242 -~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
....++.+.|.+ +++ +++++|+++||+++|++..++++++...- ..++.+++..+
T Consensus 150 ~~~P~~IA~~L~~~G~~-~~~~~VlE~L~~~~Eri~~~~~~~~~~~~-----fsdlnVv~v~~ 206 (210)
T COG2241 150 DFGPAEIAKLLTENGIG-DSRVTVLENLGYPDERITDGTAEDIAAEE-----FSDLNVVAVEK 206 (210)
T ss_pred CCCHHHHHHHHHhCCCC-CceEEEEcccCCCchhhhcCchhhhcccc-----cCCceEEEEEc
Confidence 224555555655 455 79999999999999999999999987641 33445555443
No 31
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.95 E-value=1.4e-26 Score=220.03 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=141.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcC--CCCcEEEc--CCC--cH--------
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLSY--HKF--NE-------- 139 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~--------~~LL~~~~--i~~~~is~--~~~--ne-------- 139 (368)
+||+||+|||||++||+||+++|++||+|+++...+. ..++..+. .+++++.+ .+. ..
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~~ 81 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAVD 81 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhHH
Confidence 6999999999999999999999999999999754433 23333322 12334433 221 11
Q ss_pred -------HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhh---CCCCEEEEcCccHHHHHHHhcCCCCCc--
Q 017645 140 -------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATDE-- 207 (368)
Q Consensus 140 -------~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~---~gi~V~vIPGiSA~~aA~a~sGlp~~~-- 207 (368)
++..+.|.+.+++|++|+++ ..|||++|+.+.++.+.+.+ .++++++|||+||+++|++++|+||++
T Consensus 82 ~~~~~~~~~~a~~i~~~~~~g~~Vv~L-~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 82 DWHAQRADIWAQAIAEELGDDGTGAFL-VWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcEEEE-eCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 12356677888999999999 59999999999999998876 478999999999999999999999974
Q ss_pred --EEEEEecCCCchhhHHHHHhh-hcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHH
Q 017645 208 --FTFVGFLPKHARSRTERLMLS-ANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKE 284 (368)
Q Consensus 208 --f~fvGflp~~~~~~~~~L~~l-~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~ 284 (368)
|.++ |.+. +... ....+++++|...++..+.+ .+ .+.++++++++|+++|+++++++.++.+
T Consensus 161 ~~l~v~---~g~~------l~~~~l~~~~~~vilk~~~~~~~~l---~~---~~~~~~v~e~lg~pdE~I~~~~l~~l~~ 225 (249)
T TIGR02434 161 EPVQIT---TGRR------LAEGGFPEGDTVVVMLDGEQAFQRV---DP---EDIDIYWGAYLGTPDEILISGPLAEVGP 225 (249)
T ss_pred ceEEEE---eccc------hhhccccCCCeEEEEECCccCHHHh---cC---CCCEEEEEEeCCCCCeEEEEccHHHHHH
Confidence 4444 3321 2222 33456777777666633322 22 3679999999999999999999999877
Q ss_pred HHH
Q 017645 285 AFS 287 (368)
Q Consensus 285 ~~~ 287 (368)
...
T Consensus 226 ~~~ 228 (249)
T TIGR02434 226 RIA 228 (249)
T ss_pred HHH
Confidence 654
No 32
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.93 E-value=4.6e-26 Score=219.95 Aligned_cols=217 Identities=21% Similarity=0.267 Sum_probs=180.8
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcC------CCcHHHHHHHHHHHHhCCC
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQGE 154 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~------~~ne~~~~~~Ii~~l~~Gk 154 (368)
|.+|+||+|||+|+++|++|+++|++||+|++ |..++..+|+....+.+++... +..+++..+..++.+.+|.
T Consensus 256 G~i~LvGsGPGsp~lLT~~A~~~I~sAD~~La-DkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G~ 334 (506)
T KOG1527|consen 256 GDIYLVGSGPGSPELLTLKAVRVIQSADLLLA-DKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAGA 334 (506)
T ss_pred CcEEEEccCCCChhheeHHHHHHHhhcceehh-hhcccHHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999999999999 7889999999888888876433 3345666677888999999
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEE-EecCCCchhhHHHHHh
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFV-GFLPKHARSRTERLML 227 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fv-Gflp~~~~~~~~~L~~ 227 (368)
.|+.+ ..|||.||++|.+....+.+.|+...|||||||...+.+.+|+|.. .|.|. |. .++++.. ...
T Consensus 335 ~VVRL-KqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~cTGt-grKG~~p---~ip 409 (506)
T KOG1527|consen 335 TVVRL-KQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFCTGT-GRKGGTP---AIP 409 (506)
T ss_pred EEEEe-cCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEEecc-CCCCCCC---Ccc
Confidence 99999 7999999999999999999999999999999999999999999984 45554 22 3333211 111
Q ss_pred hhcCCceEEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 228 SANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 228 l~~~~~tlVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
......|.||||.-||+.-++..|++ +|+.+.+++++++.+.|+|++++.+++++.+.+++.+...+ .++|.|+..
T Consensus 410 ~fvp~~TtVflMaLhrl~~L~q~L~~hGwp~d~Pa~ivERgscPdQR~vf~~Lkdv~ee~~~~gs~pP-glliiGk~v 486 (506)
T KOG1527|consen 410 AFVPDTTTVFLMALHRLPSLAQKLMDHGWPSDTPAVIVERGSCPDQRTVFAELKDVAEEIQSAGSVPP-GLLIIGKVV 486 (506)
T ss_pred ccCCCceeEeeehhcchHHHHHHHHhcCCCCCCCeeeEeccCCchHHHHHHHHHHHHHHHHhccCCCC-cEEEEeeee
Confidence 23457899999999999998887776 68889999999999999999999999999988876555555 466667754
No 33
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.6e-21 Score=181.87 Aligned_cols=212 Identities=24% Similarity=0.290 Sum_probs=160.5
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc-------HHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCC
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~-------~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk 154 (368)
+||+||.|+.+..|||+++++++++||.|++| .+++ .++-+.+ .++++......-++..+.|++.+++ +
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E-~YTS~~~~~~~e~le~~~--gkev~~~~R~dlE~~~~~il~~a~~-~ 76 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAE-FYTSILLGSNLEKLEELI--GKEVILLDREDLEENSRSILDRAKD-K 76 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEE-eeecccccchHHHHHHHh--CCceEeccHHHHhhcchhHHHHHhc-C
Confidence 59999999999999999999999999999997 4553 2333334 3677666544333335678888876 4
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcE----EEE----EecCCCchhhHHHHH
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF----TFV----GFLPKHARSRTERLM 226 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f----~fv----Gflp~~~~~~~~~L~ 226 (368)
+|+++ .+|||++..++..|+-++++.|++|++|||+|.+++|.+.+|+...+| ++. +|.|...- ....+
T Consensus 77 ~Vall-~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~y--d~Ik~ 153 (260)
T COG1798 77 DVALL-VAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPY--DVIKE 153 (260)
T ss_pred CEEEE-ecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHH--HHHHH
Confidence 69999 599999999999999999999999999999999999999999998755 111 33333321 23334
Q ss_pred hhhcCCceEEE--------ecCcccHHHHHHHHHHH-----hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCC
Q 017645 227 LSANEVKTQIF--------YVPPHKLLQFLEETSLL-----FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKG 293 (368)
Q Consensus 227 ~l~~~~~tlVl--------yesp~rl~~~l~~L~~~-----~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kg 293 (368)
+....-+|+++ ||+++...+.|-++.+. +.+++.+++..++|.++|.++.|+++++.++.- -.+
T Consensus 154 N~~~GLHTl~lLDi~~~~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v~ag~l~~l~~~Df---g~P 230 (260)
T COG1798 154 NLERGLHTLVLLDIKEDERYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELADEDF---GEP 230 (260)
T ss_pred hhhcCccceEEEEecccccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceEEechHHHHhhccc---CCC
Confidence 56667789998 56666555544444432 557899999999999999999999999998632 134
Q ss_pred cEEEEEeCCC
Q 017645 294 EITVLVEGKA 303 (368)
Q Consensus 294 e~vlvi~g~~ 303 (368)
..++||.|+-
T Consensus 231 lh~lvvp~~L 240 (260)
T COG1798 231 LHSLVVPGRL 240 (260)
T ss_pred ceEEEEeccc
Confidence 4788888763
No 34
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.2e-15 Score=139.11 Aligned_cols=213 Identities=21% Similarity=0.276 Sum_probs=153.3
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH------HHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCe
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG------KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~------~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ 155 (368)
++|+||.|.|+-+|||+|+++++++|.-|+-| .+++. .-|+.| ..++++--....-++..+.|++... ..+
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylE-aYTSil~~~l~~~lEk~-yGk~iilADRemvEq~sd~il~~ad-~~d 77 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLE-AYTSILGVGLDATLEKF-YGKEIILADREMVEQESDKILDEAD-KED 77 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHH-HHHHHHHhhhhHHHHHH-hCceeEeccHHHHHhhHHHHhhhhh-hcc
Confidence 58999999999999999999999999999987 34431 112221 1356654443333455778888765 468
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcE---EEEEecCCCchhh---HHHHHhhh
Q 017645 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARSR---TERLMLSA 229 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f---~fvGflp~~~~~~---~~~L~~l~ 229 (368)
||++ ..|||+...++..|+-++++.||+|++|..+| ++.|....|+.+.+| .-+-|....++.. .+..++-.
T Consensus 78 Va~L-VVGdPfgATTHsDlvlRAk~~~ipv~vIHNAS-imNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~Nr~ 155 (272)
T KOG3123|consen 78 VAFL-VVGDPFGATTHSDLVLRAKELGIPVEVIHNAS-IMNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKENRQ 155 (272)
T ss_pred eEEE-EecCcccccchhhhheehhhcCCCeEEEechH-HHhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHHhhh
Confidence 9999 68999999999999999999999999999998 688899999988754 1122445555431 12222233
Q ss_pred cCCceEEE-------------------ecCcc--cHHHHHHHHHHH--------hCCCceeeeecccCCCccEEEEeehh
Q 017645 230 NEVKTQIF-------------------YVPPH--KLLQFLEETSLL--------FGYSRRCVIAREITKMHEEFWRGTLG 280 (368)
Q Consensus 230 ~~~~tlVl-------------------yesp~--rl~~~l~~L~~~--------~g~~~~v~v~~eLtk~~E~i~~gtl~ 280 (368)
..-+|+++ |++|+ .+.+..++|++. +.+++.++-..++|.++|.|+.||+.
T Consensus 156 ~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs~~q~i~~gt~~ 235 (272)
T KOG3123|consen 156 LGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGSDDQKIVAGTIK 235 (272)
T ss_pred cCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCCCcceeeheeHH
Confidence 34456664 66665 234455555552 67889999999999999999999999
Q ss_pred hHHHHHHhCCCCCcEEEEEeCC
Q 017645 281 EAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 281 el~~~~~~~~~kge~vlvi~g~ 302 (368)
++...... -.-.++||.|.
T Consensus 236 ~l~~~d~G---~PLHslii~ge 254 (272)
T KOG3123|consen 236 DLAEVDFG---EPLHSLIIPGE 254 (272)
T ss_pred hHhhcccC---CCceeEEeecC
Confidence 99876321 23467888884
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.11 E-value=2e-09 Score=104.97 Aligned_cols=196 Identities=13% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcC-CCCcEEEc----CCCc-----HHHHHHHHHH
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN-IKTPLLSY----HKFN-----ESQREQTVLN 148 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~-i~~~~is~----~~~n-----e~~~~~~Ii~ 148 (368)
|.+++.+||.|+|+.++||+--.+.|++.|-++.- |.-. .+++.+. .....-+| ..|. ....+..+++
T Consensus 1 mah~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~R-TkdH-PviE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~Lve 78 (488)
T COG3956 1 MAHTITVVGLGAGDKDQLTLGIYKLLKNQDNLYVR-TKDH-PVIEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADLVE 78 (488)
T ss_pred CCceEEEEeeCCCchhhcchHHHHHHhccceEEEe-cCCC-chHHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999994 4332 2334332 12222222 1222 1344566677
Q ss_pred HHhCCCeEEEEccCCCCCCCCcHHH-HHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC-CcEEEEEecCCCchhhHHHHH
Q 017645 149 RLKQGEIVALISDAGTPGISDPGTE-LAKLCVDEKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKHARSRTERLM 226 (368)
Q Consensus 149 ~l~~Gk~ValvSdaGdP~isdpg~~-Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~-~~f~fvGflp~~~~~~~~~L~ 226 (368)
.+++ +++++. ..|.|.+...... |+.++.+.++.|.++||-|-+-+.+.++.+++ ..|+++.- .. ...
T Consensus 79 aAke-kdIvYA-VPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q~vDa---~~--l~~--- 148 (488)
T COG3956 79 AAKE-KDIVYA-VPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQIVDA---TD--LSN--- 148 (488)
T ss_pred hhcc-cceEEe-cCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCceEecc---ch--hhH---
Confidence 7665 899999 7999999997644 56667778999999999999999999999977 57888721 11 111
Q ss_pred hhhcCCceEEEecCccc-H-HHHHHHHHHHhCCCceeeeecccCCCccE-EEEeehhhHHHHH
Q 017645 227 LSANEVKTQIFYVPPHK-L-LQFLEETSLLFGYSRRCVIAREITKMHEE-FWRGTLGEAKEAF 286 (368)
Q Consensus 227 ~l~~~~~tlVlyesp~r-l-~~~l~~L~~~~g~~~~v~v~~eLtk~~E~-i~~gtl~el~~~~ 286 (368)
..+.-..-+|+...-.. + .++--.|++.++++++|.++...+..+|+ +..-.+-||....
T Consensus 149 ~il~vr~hivItQVY~~miAs~vKltLmE~ypDDyev~ivtaags~~ee~v~tvPLyELDr~~ 211 (488)
T COG3956 149 DILDVRLHIVITQVYDQMIASDVKLTLMEYYPDDYEVYIVTAAGSENEESVRTVPLYELDRQS 211 (488)
T ss_pred HHHhhhhceeehhHHHHHHHHhHHHHHHHhCCCCceEEEEEeccCCCccceeeecceeechhh
Confidence 11222223333222111 2 23333567789999999999999999888 7777888887654
No 36
>PF13309 HTH_22: HTH domain
Probab=86.78 E-value=1.5 Score=33.18 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHcCCCHHHHHHH
Q 017645 313 DQLEKELRGLISAG-HNLSMAVKLVAQGTSVRRKTIYSL 350 (368)
Q Consensus 313 ~~~~~~~~~l~~~~-~~~k~a~k~~a~~~~~~k~~vY~~ 350 (368)
++-.+.++.|-++| +..|.|+..+|+.+|+||-.||+.
T Consensus 24 ~~k~~iV~~L~~~G~F~lKgav~~vA~~L~iS~~TVY~Y 62 (64)
T PF13309_consen 24 EEKKEIVRQLYEKGIFLLKGAVEYVAEKLGISRATVYRY 62 (64)
T ss_pred HHHHHHHHHHHHCCCcccCcHHHHHHHHHCCCHHHHHHH
Confidence 44456778888888 599999999999999999999986
No 37
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.85 E-value=43 Score=34.25 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=94.1
Q ss_pred CCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEE---EecCCCchhhHHHHHhh
Q 017645 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV---GFLPKHARSRTERLMLS 228 (368)
Q Consensus 152 ~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv---Gflp~~~~~~~~~L~~l 228 (368)
+|++|++++ .|+.=.+....+...+...|++|.+......+..++.... -.++.++ |..+.... ....+..+
T Consensus 205 ~g~~V~lit--~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~--~~DlVLIDTaGr~~~~~~-~l~el~~~ 279 (388)
T PRK12723 205 KSLNIKIIT--IDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK--DFDLVLVDTIGKSPKDFM-KLAEMKEL 279 (388)
T ss_pred CCCeEEEEe--ccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC--CCCEEEEcCCCCCccCHH-HHHHHHHH
Confidence 578999994 7776444445566666668999999998888887776652 3466676 65543321 12233332
Q ss_pred hc----CCceEEEecCcccHHHHHHHHHHH--hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 229 AN----EVKTQIFYVPPHKLLQFLEETSLL--FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 229 ~~----~~~tlVlyesp~rl~~~l~~L~~~--~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
.. ...++.+..+...-.++.+.+.+. ++. ..+ | +||.||....|.+=.+.... +=++.-+-.|.
T Consensus 280 l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~-~~~-I---~TKlDet~~~G~~l~~~~~~-----~~Pi~yit~Gq 349 (388)
T PRK12723 280 LNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY-KTV-I---FTKLDETTCVGNLISLIYEM-----RKEVSYVTDGQ 349 (388)
T ss_pred HHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC-CEE-E---EEeccCCCcchHHHHHHHHH-----CCCEEEEeCCC
Confidence 22 224555555444333333323222 232 233 2 57999998888877776553 23444444554
Q ss_pred CcCccCCCChHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 017645 303 AICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQG 339 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~~~~~k~a~k~~a~~ 339 (368)
... +.....+....++.++ |++..+-+..+-+.
T Consensus 350 ~vP--eDl~~~~~~~~~~~l~--g~~~~~~~~~~~~~ 382 (388)
T PRK12723 350 IVP--HNISIAEPLTFIKKIN--GYRISDDAEFIRKL 382 (388)
T ss_pred CCh--hhhhhCCHHHHHHHhc--CCCccchHHHHHHh
Confidence 331 1121222333444444 88888766666553
No 38
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=85.34 E-value=1.7 Score=30.29 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
.+.+|.++|++.++ +|+.+|+++..||+..
T Consensus 13 ~i~~l~~~G~si~~----IA~~~gvsr~TvyR~l 42 (45)
T PF02796_consen 13 EIKELYAEGMSIAE----IAKQFGVSRSTVYRYL 42 (45)
T ss_dssp HHHHHHHTT--HHH----HHHHTTS-HHHHHHHH
T ss_pred HHHHHHHCCCCHHH----HHHHHCcCHHHHHHHH
Confidence 45678888988665 4567799999999864
No 39
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=78.40 E-value=4.2 Score=29.48 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHc
Q 017645 315 LEKELRGLISAGHNLSMAVKLVAQGT 340 (368)
Q Consensus 315 ~~~~~~~l~~~~~~~k~a~k~~a~~~ 340 (368)
..+.+.+|+.+|+|..+|+++||+..
T Consensus 16 AvE~Iq~LMaqGmSsgEAI~~VA~~i 41 (51)
T PF03701_consen 16 AVERIQELMAQGMSSGEAIAIVAQEI 41 (51)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45678899999999999999999763
No 40
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=75.53 E-value=9 Score=36.33 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=67.3
Q ss_pred EEecCCCCccchhHHHHHHHh--hCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCC----------cH-------------
Q 017645 85 LVATPIGNLEDITLRALRVLK--SANVILSEDTRHSGKLLQYYNIKTPLLSYHKF----------NE------------- 139 (368)
Q Consensus 85 iVGtGpGn~~dITlrAl~~L~--~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~----------ne------------- 139 (368)
+||+|-|.--.-..+++--.. +.++...+.+..+..++..++|. +.+..++ +|
T Consensus 23 viGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~~t~~l~~~~GI~--v~~l~~~~~lDl~iDGADEvd~~~~lIKGGGg 100 (227)
T COG0120 23 VIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSFQTEELARELGIP--VSSLNEVDSLDLAIDGADEVDPNLNLIKGGGG 100 (227)
T ss_pred EEEEcCcHHHHHHHHHHHHhhccCccEEEEeCCHHHHHHHHHcCCe--ecCccccCccceEeecccccCCCCCEEccChH
Confidence 556666666555566664222 34677776667778888888873 2211111 11
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCc-cHHHHHHHhcCCCC
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA-SAFVAALSASGLAT 205 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGi-SA~~aA~a~sGlp~ 205 (368)
.-..++|+.... .+-|+++ |. ..+|..+.+..++|||+|.. +.+.-.+..+|...
T Consensus 101 Al~rEKIva~~a-k~~IvIv-De---------sKlV~~LG~fplPVEVip~a~~~v~r~l~~~g~~~ 156 (227)
T COG0120 101 ALLREKIVASAA-KRFIVIV-DE---------SKLVEVLGKFPLPVEVIPFARSAVLRKLEKLGGKP 156 (227)
T ss_pred HHHHHHHHHHhc-CeEEEEE-eC---------ccchhhcCCCCcCEEEchhHHHHHHHHHHHhCCCc
Confidence 123467777654 4678887 63 56788888889999999987 44555566566543
No 41
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=72.33 E-value=13 Score=26.00 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Q 017645 313 DQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352 (368)
Q Consensus 313 ~~~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~ 352 (368)
+++++.+..+...++|..+| |+.||+|+..+|..+-
T Consensus 3 e~l~~Ai~~v~~g~~S~r~A----A~~ygVp~sTL~~r~~ 38 (45)
T PF05225_consen 3 EDLQKAIEAVKNGKMSIRKA----AKKYGVPRSTLRRRLR 38 (45)
T ss_dssp HHHHHHHHHHHTTSS-HHHH----HHHHT--HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH----HHHHCcCHHHHHHHHc
Confidence 45666666665433777655 5788999999997653
No 42
>COG2964 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.76 E-value=8.9 Score=36.16 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=34.1
Q ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 017645 316 EKELRGLISAG-HNLSMAVKLVAQGTSVRRKTIYSLALRKFG 356 (368)
Q Consensus 316 ~~~~~~l~~~~-~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~ 356 (368)
.++++.|-++| +..|+|+..||+..|++|-.||+.+-+.+.
T Consensus 176 reiV~~L~EkGiF~lK~Ai~~VA~~L~iSr~TVY~YL~~~k~ 217 (220)
T COG2964 176 REIVKALYEKGIFNLKDAINIVADRLGISRHTVYRYLRKFKA 217 (220)
T ss_pred HHHHHHHHhcCccchhhHHHHHHHHhCCChHHHHHHHHHhhc
Confidence 34677777788 599999999999999999999988655543
No 43
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=70.10 E-value=20 Score=26.54 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.+-.+++.+.+..++++.+++.|+.++.++.+-+..
T Consensus 21 ~Iw~~~~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~ 56 (68)
T PF05402_consen 21 FIWELLDGPRTVEEIVDALAEEYDVDPEEAEEDVEE 56 (68)
T ss_dssp HHHHH--SSS-HHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455666777999999999999999999988776544
No 44
>PRK05114 hypothetical protein; Provisional
Probab=68.16 E-value=10 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH
Q 017645 315 LEKELRGLISAGHNLSMAVKLVAQG 339 (368)
Q Consensus 315 ~~~~~~~l~~~~~~~k~a~k~~a~~ 339 (368)
..+.+..|+.+|+|.-+|+++||+.
T Consensus 16 AVErIq~LMaqGmSsgEAI~~VA~e 40 (59)
T PRK05114 16 AVERIQELMAQGMSSGEAIALVAEE 40 (59)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHH
Confidence 4567888999999999999999976
No 45
>PF04256 DUF434: Protein of unknown function (DUF434); InterPro: IPR007368 This is a family of uncharacterised proteins.
Probab=62.94 E-value=15 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHH
Q 017645 315 LEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSL 350 (368)
Q Consensus 315 ~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~ 350 (368)
..+.+.-|+..|.+.|.|.+.|+..|.+++++=.-.
T Consensus 6 A~~Dl~yLLnRGY~~k~al~fVgnhy~Ls~rqR~~L 41 (58)
T PF04256_consen 6 AAEDLRYLLNRGYPKKSALEFVGNHYRLSKRQRLAL 41 (58)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHhccCCHHHHHHH
Confidence 344567789999999999999999999999886543
No 46
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=62.67 E-value=19 Score=26.73 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKF 355 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~ 355 (368)
..+.|--+|.+++++|+.+ |+|++.||+..-.-.
T Consensus 5 ~A~~LY~~G~~~~eIA~~L----g~~~~TV~~W~~r~~ 38 (58)
T PF06056_consen 5 QARSLYLQGWSIKEIAEEL----GVPRSTVYSWKDRYK 38 (58)
T ss_pred HHHHHHHcCCCHHHHHHHH----CCChHHHHHHHHhhC
Confidence 4445555799999876555 999999999875543
No 47
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=61.23 E-value=12 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=17.6
Q ss_pred HHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCCc
Q 017645 322 LISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQ 358 (368)
Q Consensus 322 l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~~ 358 (368)
+..+|.+.+++| +.+|++++.||+..-.-.++.
T Consensus 13 l~~~G~s~~~ia----~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 13 LLREGWSIREIA----KRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp HHHHT--HHHHH----HHHTS-HHHHHHHHT------
T ss_pred HHHCCCCHHHHH----HHHCcCHHHHHHHHHHccccc
Confidence 334488877765 555999999999865443333
No 48
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.57 E-value=14 Score=27.35 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHc
Q 017645 315 LEKELRGLISAGHNLSMAVKLVAQGT 340 (368)
Q Consensus 315 ~~~~~~~l~~~~~~~k~a~k~~a~~~ 340 (368)
..+.+.+|+.+|+|.-+|+++||+..
T Consensus 16 AVE~Iq~lMaeGmSsGEAIa~VA~el 41 (60)
T COG3140 16 AVERIQELMAEGMSSGEAIALVAQEL 41 (60)
T ss_pred HHHHHHHHHHccccchhHHHHHHHHH
Confidence 44567889999999999999999763
No 49
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=59.20 E-value=55 Score=25.31 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=45.4
Q ss_pred hhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHH
Q 017645 96 ITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELA 175 (368)
Q Consensus 96 ITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv 175 (368)
+|+..++.+.+.+.++- |.|.........-....-+++. + .+..+..+..++.|+++++.|. ......
T Consensus 1 ~~~~e~~~~~~~~~~ii-D~R~~~~~~~~hipgA~~ip~~-----~-~~~~~~~~~~~~~vvl~c~~g~-----~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLI-DVRTPQEFEKGHIKGAINIPLD-----E-LRDRLNELPKDKEIIVYCAVGL-----RGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEE-ECCCHHHHhcCCCCCCEeCCHH-----H-HHHHHHhcCCCCcEEEEcCCCh-----hHHHHH
Confidence 35556666666676666 7886543322111111122221 1 2222334566788888865431 234455
Q ss_pred HHhhhCCCCEEEEcCc
Q 017645 176 KLCVDEKIPVVPIPGA 191 (368)
Q Consensus 176 ~~~~~~gi~V~vIPGi 191 (368)
+.+++.|+++.++.|-
T Consensus 69 ~~L~~~G~~v~~l~GG 84 (90)
T cd01524 69 RILTQNGFKVKNLDGG 84 (90)
T ss_pred HHHHHCCCCEEEecCC
Confidence 6677788888888775
No 50
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=58.66 E-value=13 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=18.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
.+..+.++|+|.+++ |+.+|.+++-||+.+
T Consensus 12 ~I~~l~~~G~s~~~I----A~~lg~s~sTV~rel 41 (44)
T PF13936_consen 12 QIEALLEQGMSIREI----AKRLGRSRSTVSREL 41 (44)
T ss_dssp HHHHHHCS---HHHH----HHHTT--HHHHHHHH
T ss_pred HHHHHHHcCCCHHHH----HHHHCcCcHHHHHHH
Confidence 456777889888775 556699999999875
No 51
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=58.39 E-value=1.2e+02 Score=26.14 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=65.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHH---hhCCEEEEcCCCCc-HHHHhhcC-CCCcE--EEcCCCcHHHHHHHHHHHHh
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVL---KSANVILSEDTRHS-GKLLQYYN-IKTPL--LSYHKFNESQREQTVLNRLK 151 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L---~~aDvI~~edtR~~-~~LL~~~~-i~~~~--is~~~~ne~~~~~~Ii~~l~ 151 (368)
|++.-.++|+.+|+..++-..-...+ +..++|+.- .+++ .++++... .+..+ +|+..........++++.++
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG-~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG-VMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 34556799999999998888776654 346788774 4454 55555432 22333 34332222334455566664
Q ss_pred CC-C-eEEEEccCCCCCCCCc-HHHHHHHhhhCCCCEEEEcCcc
Q 017645 152 QG-E-IVALISDAGTPGISDP-GTELAKLCVDEKIPVVPIPGAS 192 (368)
Q Consensus 152 ~G-k-~ValvSdaGdP~isdp-g~~Lv~~~~~~gi~V~vIPGiS 192 (368)
+. - ++-++ ..|.+.+.+- ..+..+.+++.|+....-||..
T Consensus 80 ~~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~ 122 (137)
T PRK02261 80 EAGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTD 122 (137)
T ss_pred hcCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCC
Confidence 32 2 34444 3687766332 3456677888887766665654
No 52
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=57.42 E-value=66 Score=33.28 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=36.0
Q ss_pred eEEEEecCCCCc--cchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc
Q 017645 82 GLYLVATPIGNL--EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP 130 (368)
Q Consensus 82 ~LyiVGtGpGn~--~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~ 130 (368)
+++++|-|+|=. ..--..+..+|+.||.|..-| ..+..+|+.+++..+
T Consensus 150 pv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD-~~S~~~Lk~lGv~~~ 199 (426)
T PRK10017 150 PLYMIGHSVGPFQDEQFNQLANYVFGHCDALILRE-SVSLDLMKRSNITTA 199 (426)
T ss_pred CEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEcc-HHHHHHHHHhCCCcc
Confidence 488888877733 334556778899999999966 477889999988643
No 53
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=57.30 E-value=30 Score=34.56 Aligned_cols=113 Identities=20% Similarity=0.312 Sum_probs=76.4
Q ss_pred CCCCccchhHHHHHHH--hhCCEEEEcCCCCcHHHHhhcCC-------------CCcEEEcCCCcHHHHHHHHHHHHhCC
Q 017645 89 PIGNLEDITLRALRVL--KSANVILSEDTRHSGKLLQYYNI-------------KTPLLSYHKFNESQREQTVLNRLKQG 153 (368)
Q Consensus 89 GpGn~~dITlrAl~~L--~~aDvI~~edtR~~~~LL~~~~i-------------~~~~is~~~~ne~~~~~~Ii~~l~~G 153 (368)
-.+|+++|-.+.+... +..|+|++-.-|.+......+++ +.|+. .|-.+...-.+++++.|..|
T Consensus 131 E~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlm-vHigePp~~~dEvlerL~~G 209 (386)
T COG3964 131 ELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLM-VHIGEPPVLMDEVLERLRRG 209 (386)
T ss_pred hhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCchHHHHHHHHhhcCCceE-EecCCCCccHHHHHHhccCC
Confidence 3578999999887665 56999999766654333333333 22332 23223334458899999999
Q ss_pred CeEEEEccCCCCC--CCCcH--HHHHHHhhhCCCCEEEEcCccHHHHHHHhcCC
Q 017645 154 EIVALISDAGTPG--ISDPG--TELAKLCVDEKIPVVPIPGASAFVAALSASGL 203 (368)
Q Consensus 154 k~ValvSdaGdP~--isdpg--~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGl 203 (368)
..+.-. ..|-|. +.+-| ...+++++++|+.+.+=.|-+|+.-..++.-+
T Consensus 210 DIitHc-fngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr~ai 262 (386)
T COG3964 210 DIITHC-FNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVARRAI 262 (386)
T ss_pred ceeeee-ccCCCCCccccchhHHHHHHHHHhcceEEEccCCcceeeHHHHHHHH
Confidence 777655 456554 33333 56789999999999999999998877766554
No 54
>PLN02282 phosphoglycerate kinase
Probab=55.64 E-value=2.3e+02 Score=29.28 Aligned_cols=151 Identities=16% Similarity=0.139 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcH---HHHHHHhhh-CCCCEEEEcCccHHHHHHHhcCCCCCcEEEE---Ee
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPG---TELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV---GF 213 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg---~~Lv~~~~~-~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv---Gf 213 (368)
.....|...+.+|-+|+++|--|.|-=.++. ....+.+.+ .|.+|..+|-.-.-.+--+...+...++..+ -|
T Consensus 44 a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~RF 123 (401)
T PLN02282 44 AAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRF 123 (401)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEecccc
Confidence 3456677777889999999999999323332 223333333 3778888887655444445556666555443 23
Q ss_pred cCCCchhhHHHHHhhhcCCceEEE--ecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCC
Q 017645 214 LPKHARSRTERLMLSANEVKTQIF--YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQP 291 (368)
Q Consensus 214 lp~~~~~~~~~L~~l~~~~~tlVl--yesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~ 291 (368)
.+.........-+.++...+..|- |...||.....-.+-+.++ +.+.+ ..-|+ .+..+...+ ..+
T Consensus 124 ~~~E~~~~~~~a~~LA~l~DvyVNDAFg~aHR~haS~~gi~~~l~---~~~aG----~lmek----El~~L~~~l--~~p 190 (401)
T PLN02282 124 YKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLK---PSVAG----FLMQK----ELDYLVGAV--ANP 190 (401)
T ss_pred CcccccCHHHHHHHHHHhCcEeeechhhhhhhcccchhhhhhhcC---ccccc----hHHHH----HHHHHHHHh--cCC
Confidence 333322222334445555553332 3445665443322222221 11111 11111 123333332 235
Q ss_pred CCcEEEEEeCCCc
Q 017645 292 KGEITVLVEGKAI 304 (368)
Q Consensus 292 kge~vlvi~g~~~ 304 (368)
+.+++.|+.|...
T Consensus 191 ~rP~vaIlGGaKv 203 (401)
T PLN02282 191 KKPFAAIVGGSKV 203 (401)
T ss_pred CCCeEEEEcCCcH
Confidence 7788888877654
No 55
>PLN03034 phosphoglycerate kinase; Provisional
Probab=53.58 E-value=1.9e+02 Score=30.53 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcH---HHHHHHhhh-CCCCEEEEcCccHHHHHHHhcCCCCCcEEEE---Ee
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPG---TELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV---GF 213 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg---~~Lv~~~~~-~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv---Gf 213 (368)
.....|...+++|-+|+++|--|.|-=.++. ..+++.+.+ .|.+|..+|-.-.-.+--....+...++..+ -|
T Consensus 119 a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF 198 (481)
T PLN03034 119 AAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 198 (481)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCc
Confidence 4456677777889999999999999323322 223333333 3788998986654455555566666655443 22
Q ss_pred cCCCchhhHHHHHhhhcCCceEEE--ecCcccHHHH
Q 017645 214 LPKHARSRTERLMLSANEVKTQIF--YVPPHKLLQF 247 (368)
Q Consensus 214 lp~~~~~~~~~L~~l~~~~~tlVl--yesp~rl~~~ 247 (368)
.+.........-+.++...+..|- |...||....
T Consensus 199 ~~eE~~nd~~fa~~LA~l~DiyVNDAFgtaHR~haS 234 (481)
T PLN03034 199 YKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHAS 234 (481)
T ss_pred CcccccCcHHHHHHHHhhCCEEEecchhhhHhcccc
Confidence 233222122334445555553331 3445655433
No 56
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=52.02 E-value=36 Score=25.75 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCccc
Q 017645 331 MAVKLVAQGTSVRRKTIYSLALRKFGKQIE 360 (368)
Q Consensus 331 ~a~k~~a~~~~~~k~~vY~~~~~~~~~~~~ 360 (368)
--++.+|+..|++++.+.+.+-.+..+.+-
T Consensus 23 ~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V 52 (68)
T smart00550 23 STALQLAKNLGLPKKEVNRVLYSLEKKGKV 52 (68)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 335667777899999999998777666443
No 57
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.60 E-value=73 Score=28.38 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred CCccchhHHHHHHH--hhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Q 017645 91 GNLEDITLRALRVL--KSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS 168 (368)
Q Consensus 91 Gn~~dITlrAl~~L--~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~is 168 (368)
|+.++.=..|.+.+ ..+|+|++ ...+..+|+..- +.|++... .+..+..+.+.+....+.+|+++ |.+.+.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIs--RG~ta~~lr~~~-~iPVV~I~-~s~~Dil~al~~a~~~~~~Iavv---~~~~~~ 89 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIIS--RGGTAELLRKHV-SIPVVEIP-ISGFDILRALAKAKKYGPKIAVV---GYPNII 89 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEE--EHHHHHHHHCC--SS-EEEE----HHHHHHHHHHCCCCTSEEEEE---EESS-S
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEE--CCHHHHHHHHhC-CCCEEEEC-CCHhHHHHHHHHHHhcCCcEEEE---eccccc
Q ss_pred Cc----------------------HHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCC
Q 017645 169 DP----------------------GTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (368)
Q Consensus 169 dp----------------------g~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp 204 (368)
.. ....+..+.+.|+++ +=|-+...-.+...|++
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~v--iVGg~~~~~~A~~~gl~ 145 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDV--IVGGGVVCRLARKLGLP 145 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--E--EEESHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcE--EECCHHHHHHHHHcCCc
No 58
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=48.41 E-value=39 Score=20.03 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSL 350 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~ 350 (368)
.+..+...|.+.++ +|+.+|++++.+|+.
T Consensus 13 ~i~~~~~~~~s~~~----ia~~~~is~~tv~~~ 41 (42)
T cd00569 13 EARRLLAAGESVAE----IARRLGVSRSTLYRY 41 (42)
T ss_pred HHHHHHHcCCCHHH----HHHHHCCCHHHHHHh
Confidence 34445556776554 456779999999975
No 59
>PF13551 HTH_29: Winged helix-turn helix
Probab=48.31 E-value=32 Score=27.47 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=25.5
Q ss_pred HHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCCcc
Q 017645 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQI 359 (368)
Q Consensus 321 ~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~~~ 359 (368)
.++.+|.+ .++.+|+.+|++++.||+..-....+.+
T Consensus 6 ~l~~~g~~---~~~~ia~~lg~s~~Tv~r~~~~~~~~G~ 41 (112)
T PF13551_consen 6 LLLAEGVS---TIAEIARRLGISRRTVYRWLKRYREGGI 41 (112)
T ss_pred HHHHcCCC---cHHHHHHHHCcCHHHHHHHHHHHHcccH
Confidence 45668887 3444556669999999999766555544
No 60
>PF13518 HTH_28: Helix-turn-helix domain
Probab=48.06 E-value=46 Score=22.89 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCCc
Q 017645 319 LRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQ 358 (368)
Q Consensus 319 ~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~~ 358 (368)
+...+ +|.+.++ +|+.+|+++..||+++-......
T Consensus 6 v~~~~-~g~s~~~----~a~~~gis~~tv~~w~~~y~~~G 40 (52)
T PF13518_consen 6 VELYL-EGESVRE----IAREFGISRSTVYRWIKRYREGG 40 (52)
T ss_pred HHHHH-cCCCHHH----HHHHHCCCHhHHHHHHHHHHhcC
Confidence 43444 5776665 67788999999999876554444
No 61
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=45.70 E-value=2.6e+02 Score=28.71 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCC---CCCCc--HHHHHHHhhh-CCCCEEEEcCccHHHHHHHhcCCCCCcEEEE--
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTP---GISDP--GTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV-- 211 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP---~isdp--g~~Lv~~~~~-~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv-- 211 (368)
.+..+.|...+.+|-+|+++|--|.| ...+- -..+++++.+ .|.+|..+|...--.+--....+...++..+
T Consensus 34 ~~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLEN 113 (384)
T PF00162_consen 34 RAALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDDCIGEEAEEAIESLKPGEILLLEN 113 (384)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccccCCHHHHHHHhccCCCCEEEEee
Confidence 44567777777889999999999999 33321 1233333333 2778999998643333334445566666554
Q ss_pred -EecCCCc----hhhHHHHHhhhcCCceEEE--ecCcccHH
Q 017645 212 -GFLPKHA----RSRTERLMLSANEVKTQIF--YVPPHKLL 245 (368)
Q Consensus 212 -Gflp~~~----~~~~~~L~~l~~~~~tlVl--yesp~rl~ 245 (368)
-|.+... ......-+.++...+..|- |...||..
T Consensus 114 lRf~~eE~~~~~~~~~~f~~~LA~l~DvyVNDAFg~aHR~h 154 (384)
T PF00162_consen 114 LRFYPEEEGKKEKNDTEFARKLASLADVYVNDAFGTAHRAH 154 (384)
T ss_dssp GGGSTTTTSEEHHTHHHHHHHHHTT-SEEEEESGGGTTS--
T ss_pred eccccccccccccccHHHHHHHHHhCCEEEEcCccchhcCC
Confidence 3445444 3344455566666665553 34456543
No 62
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=44.32 E-value=2.8e+02 Score=26.15 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCC-CCCcEEEEEecCCCch
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL-ATDEFTFVGFLPKHAR 219 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGl-p~~~f~fvGflp~~~~ 219 (368)
...+.....++.|++|.++| .|...-.+-..++++.+++.|..+.+-+|.-...-++....+ .++.+.+.+. +..
T Consensus 49 ~H~e~a~~aL~aGkhVl~~s-~gAlad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l~a~~ig~~~~V~i~~~---k~p 124 (229)
T TIGR03855 49 AVKEYAEKILKNGKDLLIMS-VGALADRELRERLREVARSSGRKVYIPSGAIGGLDALKAASLGRIERVVLTTT---KPP 124 (229)
T ss_pred HHHHHHHHHHHCCCCEEEEC-CcccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHHHhcccCCceEEEEEEe---cCh
Confidence 33567778889999999985 454443345678899999999999888777766666644332 3455666533 221
Q ss_pred hhHHHHHhhhcCCceEEEecCc
Q 017645 220 SRTERLMLSANEVKTQIFYVPP 241 (368)
Q Consensus 220 ~~~~~L~~l~~~~~tlVlyesp 241 (368)
..|.. ......++|+.+
T Consensus 125 ---~~~~~--~~~~~~~~f~G~ 141 (229)
T TIGR03855 125 ---ASLGR--DIKEPTTIFEGS 141 (229)
T ss_pred ---HHhcC--CCCCCEEEEEec
Confidence 22332 345566778764
No 63
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=43.85 E-value=1.7e+02 Score=24.33 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=54.5
Q ss_pred chhHHHHHHHhh-CCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHH
Q 017645 95 DITLRALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (368)
Q Consensus 95 dITlrAl~~L~~-aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~ 173 (368)
.+....++.|++ .++.++. ......+.+.+. +...+...... ...+++++.+.+=|-|+..+ +|--.|
T Consensus 6 ~~~~~~~~~l~~~~~v~~~~-~~~~~~~~~~l~-~~d~ii~~~~~--~~~~~~l~~~~~Lk~I~~~~-~G~d~i------ 74 (133)
T PF00389_consen 6 PLPDEEIERLEEGFEVEFCD-SPSEEELAERLK-DADAIIVGSGT--PLTAEVLEAAPNLKLISTAG-AGVDNI------ 74 (133)
T ss_dssp S-SHHHHHHHHHTSEEEEES-SSSHHHHHHHHT-TESEEEESTTS--TBSHHHHHHHTT-SEEEESS-SSCTTB------
T ss_pred cCCHHHHHHHHCCceEEEeC-CCCHHHHHHHhC-CCeEEEEcCCC--CcCHHHHhccceeEEEEEcc-cccCcc------
Confidence 356677888888 7888885 333334444332 23333222211 12245666665445566664 565443
Q ss_pred HHHHhhhCCCCEEEEcCccHHHHHHHh
Q 017645 174 LAKLCVDEKIPVVPIPGASAFVAALSA 200 (368)
Q Consensus 174 Lv~~~~~~gi~V~vIPGiSA~~aA~a~ 200 (368)
-+.++.+.||.|.-.||.++-..|=..
T Consensus 75 d~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 75 DLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp -HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred cHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 367889999999999999885555444
No 64
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=43.47 E-value=1.8e+02 Score=23.72 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=57.0
Q ss_pred EEEecCCCCccchhHHHHHHHhh---CCEEEEcCCCCc-HHHHhhcCCCC-cE--EEcCCCcHHHHHHHHHHHHhC-CC-
Q 017645 84 YLVATPIGNLEDITLRALRVLKS---ANVILSEDTRHS-GKLLQYYNIKT-PL--LSYHKFNESQREQTVLNRLKQ-GE- 154 (368)
Q Consensus 84 yiVGtGpGn~~dITlrAl~~L~~---aDvI~~edtR~~-~~LL~~~~i~~-~~--is~~~~ne~~~~~~Ii~~l~~-Gk- 154 (368)
.++++++|+..++-++-+..+-+ -++++.. .+.+ ..+++...-.. .+ ++...........++++.+++ +.
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg-~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~ 80 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLD 80 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCC
Confidence 47899999999999887776543 4566643 3443 35555432222 23 343322223444555555543 33
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCc
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGi 191 (368)
++.++ -.|.+...++ +.+.+.|++...-||-
T Consensus 81 ~~~i~-vGG~~~~~~~-----~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 81 DIPVL-VGGAIVTRDF-----KFLKEIGVDAYFGPAT 111 (119)
T ss_pred CCeEE-EECCCCChhH-----HHHHHcCCeEEECCHH
Confidence 46555 4687765544 3456677766666555
No 65
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=43.04 E-value=3.6e+02 Score=27.73 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCC-CCCCcH---HHHHHHhhh-CCCCEEEEcCccHHHHHHHhcCCCCCcEEEE---
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTP-GISDPG---TELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV--- 211 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP-~isdpg---~~Lv~~~~~-~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv--- 211 (368)
....+.|...+.+|-+|+++|--|-| . .++. ....+++.+ .|.+|..+|..-.-.+--....+...++..+
T Consensus 36 ~~~lpTI~~l~~~gakvvl~sH~gRP~g-~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~ 114 (389)
T PRK00073 36 RAALPTIKYLLEKGAKVILLSHLGRPKG-EDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENV 114 (389)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCCCC-CCCCcCHHHHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEecc
Confidence 34456777777888899999999999 4 4432 223333433 3678888887543333334455555554443
Q ss_pred EecCCCchhhHHHHHhhhcCCceEEE--ecCcccHH
Q 017645 212 GFLPKHARSRTERLMLSANEVKTQIF--YVPPHKLL 245 (368)
Q Consensus 212 Gflp~~~~~~~~~L~~l~~~~~tlVl--yesp~rl~ 245 (368)
-|.+.........-+.++...+..|- |...||..
T Consensus 115 Rf~~~E~~~d~~~a~~LA~l~DiyVNDAFg~aHR~h 150 (389)
T PRK00073 115 RFNKGEEKNDPELAKKLASLGDVFVNDAFGTAHRAH 150 (389)
T ss_pred CcCcccccCHHHHHHHHHHhCCEEEECchhhhhhcc
Confidence 22233222112333345554454442 34455553
No 66
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=41.91 E-value=98 Score=20.95 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 321 ~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
.|...+....+|| +..|++++.+|.++
T Consensus 13 aL~~~~gn~~~aA----~~Lgisr~tL~~kl 39 (42)
T PF02954_consen 13 ALERCGGNVSKAA----RLLGISRRTLYRKL 39 (42)
T ss_dssp HHHHTTT-HHHHH----HHHTS-HHHHHHHH
T ss_pred HHHHhCCCHHHHH----HHHCCCHHHHHHHH
Confidence 3445566776555 55599999999885
No 67
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=40.93 E-value=30 Score=24.43 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCcccc
Q 017645 332 AVKLVAQGTSVRRKTIYSLALRKFGKQIEA 361 (368)
Q Consensus 332 a~k~~a~~~~~~k~~vY~~~~~~~~~~~~~ 361 (368)
-...+|+.+|++|..+|+.+-.+...+.-.
T Consensus 20 t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 20 TLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 345566777999999999987775554433
No 68
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=39.80 E-value=2.1e+02 Score=28.79 Aligned_cols=139 Identities=15% Similarity=0.136 Sum_probs=81.6
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCC----------Cc------HHHH
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK----------FN------ESQR 142 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~----------~n------e~~~ 142 (368)
...++.+||+|=|.-.-+..--.+-++.++.|++ .|.. .-|++.....+ +.+.. .+ .++.
T Consensus 10 ~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~-nTD~--q~L~~~~a~~k-i~iG~~~t~GlGaGa~P~vG~~aAee~ 85 (338)
T COG0206 10 LKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAI-NTDA--QALKSSKADRK-ILIGESITRGLGAGANPEVGRAAAEES 85 (338)
T ss_pred cCceEEEEEeCCcchHHHHHHHHhhhCceEEEEe-ccCH--HHHhccccCeE-EEeccceeeccCCCCCcHHHHHHHHHH
Confidence 3467999999988655455555566777999999 4533 33443332222 21111 01 1344
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcH--HHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchh
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPG--TELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg--~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~ 220 (368)
.++|.+.++ |-+.+++ .+|+=+--++| ..+.+.+++.|+.+.. +..-.|.|.|......
T Consensus 86 ~~~I~~~l~-g~dmvfi-taG~GGGTGtGaaPVvakiake~g~ltva---------------vvt~Pf~~EG~~r~~~-- 146 (338)
T COG0206 86 IEEIEEALK-GADMVFV-TAGMGGGTGTGAAPVVAEIAKELGALTVA---------------VVTLPFSFEGSPRMEN-- 146 (338)
T ss_pred HHHHHHHhc-cCCeEEE-EeeecCCccccccHHHHHHHHhcCCcEEE---------------EEEecchhcCchHHHH--
Confidence 566666664 6788888 48888877766 3466666666654421 1223466665422222
Q ss_pred hHHHHHhhhcCCceEEEecC
Q 017645 221 RTERLMLSANEVKTQIFYVP 240 (368)
Q Consensus 221 ~~~~L~~l~~~~~tlVlyes 240 (368)
-.+-++.+.+..+|+|++..
T Consensus 147 A~~gi~~L~~~~DtlIvi~N 166 (338)
T COG0206 147 AEEGIEELREVVDTLIVIPN 166 (338)
T ss_pred HHHHHHHHHHhCCcEEEEec
Confidence 23567778888888887643
No 69
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=39.72 E-value=34 Score=22.90 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.7
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 017645 334 KLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 334 k~~a~~~~~~k~~vY~~~~~ 353 (368)
+.+|+.+|++++.+|+++-+
T Consensus 5 ~e~a~~lgis~~ti~~~~~~ 24 (49)
T TIGR01764 5 EEAAEYLGVSKDTVYRLIHE 24 (49)
T ss_pred HHHHHHHCCCHHHHHHHHHc
Confidence 45667779999999998643
No 70
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=38.52 E-value=1.5e+02 Score=29.94 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=48.1
Q ss_pred CCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCC-CeEEEEccCCCCCCCCcH--HHHHHHhhhCCC
Q 017645 107 ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALISDAGTPGISDPG--TELAKLCVDEKI 183 (368)
Q Consensus 107 aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~G-k~ValvSdaGdP~isdpg--~~Lv~~~~~~gi 183 (368)
--+|+.|..| -..-|+.+++...++......-..-++.|++ .| ++|++.+ ||--.+.+ ..+++.++++||
T Consensus 24 ~~~ilveg~~-d~~~l~~lgi~g~~i~~s~~p~~~cad~ii~---~gi~rVVi~~---D~d~~G~~~~~~~~~~L~~aGi 96 (360)
T PRK14719 24 GIPILVEGPN-DILSLKNLKINANFITVSNTPVFQIADDLIA---ENISEVILLT---DFDRAGRVYAKNIMEEFQSRGI 96 (360)
T ss_pred CCEEEEEcch-HHHHHHHcCCCCcEEEEeCCchHHHHHHHHH---cCCCEEEEEE---CCCCCCCccchHHHHHHHHCCC
Confidence 3578888754 4566788999888775543322334455543 45 7888885 44435543 567888999999
Q ss_pred CEE
Q 017645 184 PVV 186 (368)
Q Consensus 184 ~V~ 186 (368)
+|.
T Consensus 97 ~V~ 99 (360)
T PRK14719 97 KVN 99 (360)
T ss_pred EEE
Confidence 884
No 71
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=38.18 E-value=1.1e+02 Score=23.87 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCcCccCCCChHHHHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 291 PKGEITVLVEGKAICVVETPSEDQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 291 ~kge~vlvi~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.+|++|++-.+.-- .. ++.-..+-.+++...+..++++.+++.|+. +..+++-++..
T Consensus 14 v~~~~Vl~~p~~~~----~L--n~~g~~Iw~lldg~~tv~eI~~~L~~~Y~~-~e~~~~dV~~f 70 (81)
T TIGR03859 14 AQDCYVLLYPEGMV----KL--NDSAGEILELCDGKRSLAEIIQELAQRFPA-AEEIEDDVIAF 70 (81)
T ss_pred ccCcEEEEcCCcee----ee--ChHHHHHHHHccCCCcHHHHHHHHHHHcCC-hhhHHHHHHHH
Confidence 57887777654321 11 123334556777778999999999999999 88888776554
No 72
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=37.92 E-value=53 Score=25.65 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
|+.+|.++.+|+.+|++++++...+-.
T Consensus 1 mtk~eli~~ia~~~~~~~~~v~~vl~~ 27 (90)
T smart00411 1 MTKSELIDAIAEKAGLSKKDAKAAVDA 27 (90)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567899999999999999999877543
No 73
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=37.34 E-value=1.6e+02 Score=29.38 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhh
Q 017645 101 LRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD 180 (368)
Q Consensus 101 l~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~ 180 (368)
++.|..+.+++.. ..|.+.|..+|+...+++ .+.+.+..++.+......|++|.+. -+|-+.-.+....+.+.+.+
T Consensus 93 ~~~l~~~~i~aVG--~~Ta~aL~~~G~~~~~~p-~~~~~e~L~~~l~~~~~~g~~vli~-~~~~~~~~~~~~~L~~~L~~ 168 (381)
T PRK07239 93 LEALSSARLLARG--PKATGAIRAAGLREEWSP-ASESSAEVLEYLLEEGVAGKRIAVQ-LHGATDEWEPLPEFLEALRA 168 (381)
T ss_pred HHHHcCCeEEEEC--ccHHHHHHHcCCCCccCC-CCCccHHHHHHHhcCCCCCCEEEEE-cCCCccccCchHHHHHHHHH
Confidence 3445556655543 234566777777544432 2333344444444434467888876 34511111123467888888
Q ss_pred CCCCEEEEc
Q 017645 181 EKIPVVPIP 189 (368)
Q Consensus 181 ~gi~V~vIP 189 (368)
.|++|+.+|
T Consensus 169 ~G~~V~~~~ 177 (381)
T PRK07239 169 AGAEVVPVP 177 (381)
T ss_pred CCCEEEEeC
Confidence 888776665
No 74
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=37.25 E-value=3.3e+02 Score=26.23 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCCCCCCC-cHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEE-EecCC
Q 017645 139 ESQREQTVLNRLKQGEIVALISDAGTPGISD-PGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV-GFLPK 216 (368)
Q Consensus 139 e~~~~~~Ii~~l~~Gk~ValvSdaGdP~isd-pg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv-Gflp~ 216 (368)
+.+..+++++.+.+-++|.++ | =+-++ ...++-.++..-|.++..+.+...... ..+-+..+++.|. .| ++
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~---G-~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~--~~~~~~~~Dv~i~iS~-sG 188 (281)
T COG1737 116 DEEALERAVELLAKARRIYFF---G-LGSSGLVASDLAYKLMRIGLNVVALSDTHGQLM--QLALLTPGDVVIAISF-SG 188 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEE---E-echhHHHHHHHHHHHHHcCCceeEecchHHHHH--HHHhCCCCCEEEEEeC-CC
Confidence 355678888888887888888 5 33333 457778888889999999999987773 4455556666554 44 33
Q ss_pred CchhhHHHHHhhhcCCceEEEecC
Q 017645 217 HARSRTERLMLSANEVKTQIFYVP 240 (368)
Q Consensus 217 ~~~~~~~~L~~l~~~~~tlVlyes 240 (368)
..++-.+.++.+.+.+.++|...+
T Consensus 189 ~t~e~i~~a~~ak~~ga~vIaiT~ 212 (281)
T COG1737 189 YTREIVEAAELAKERGAKVIAITD 212 (281)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcC
Confidence 333334455555555555555544
No 75
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=36.01 E-value=1.5e+02 Score=20.76 Aligned_cols=32 Identities=3% Similarity=-0.052 Sum_probs=27.6
Q ss_pred HHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 323 ISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 323 ~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.....+..+....+|+.+|++...|+.++...
T Consensus 20 ~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nr 51 (57)
T PF00046_consen 20 QENPYPSKEEREELAKELGLTERQVKNWFQNR 51 (57)
T ss_dssp HHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHH
T ss_pred HHhccccccccccccccccccccccccCHHHh
Confidence 34678999999999999999999999987654
No 76
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=35.78 E-value=85 Score=34.03 Aligned_cols=59 Identities=15% Similarity=-0.023 Sum_probs=35.3
Q ss_pred HHHHhhhcCCceEEEecCcc---cHH-HHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHH
Q 017645 223 ERLMLSANEVKTQIFYVPPH---KLL-QFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEA 285 (368)
Q Consensus 223 ~~L~~l~~~~~tlVlyesp~---rl~-~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~ 285 (368)
+.+..++.....+|..|... -+. .+++.|.+ .+.. .=+.+++.|+|-+-.|+.+++...
T Consensus 544 ~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~-~~~~---~~v~~lglpd~fi~hg~~~el~~~ 606 (627)
T COG1154 544 ALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAA-HGIL---VPVLNLGLPDEFIDHGSPEELLAE 606 (627)
T ss_pred HHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHh-cCCC---CceEEecCChHhhccCCHHHHHHH
Confidence 45677777777777766533 222 33333333 2212 334678888888888888887764
No 77
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=35.14 E-value=72 Score=29.71 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCC--CCEEEEcCccHH
Q 017645 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK--IPVVPIPGASAF 194 (368)
Q Consensus 144 ~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~g--i~V~vIPGiSA~ 194 (368)
++++.....+..-|++.|..+|++++ .++.+.+.+.| ++|.++-|=.-+
T Consensus 38 ~~fL~~~~~~~pGclllDvrMPg~sG--lelq~~L~~~~~~~PVIfiTGhgDI 88 (202)
T COG4566 38 EEFLAAAPLDRPGCLLLDVRMPGMSG--LELQDRLAERGIRLPVIFLTGHGDI 88 (202)
T ss_pred HHHHhhccCCCCCeEEEecCCCCCch--HHHHHHHHhcCCCCCEEEEeCCCCh
Confidence 44555555566666666999999986 66666666654 355555554433
No 78
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=34.94 E-value=52 Score=29.51 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 315 LEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 315 ~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
-.+.+++|..+|+|.+++++.+. |++||-|--++..+
T Consensus 7 ~~~~L~~lw~~G~SasqIA~~lg---~vsRnAViGk~hRl 43 (162)
T PF07750_consen 7 RVERLRKLWAEGLSASQIARQLG---GVSRNAVIGKAHRL 43 (162)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhC---Ccchhhhhhhhhcc
Confidence 34567888899999999888775 59999998877655
No 79
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=34.66 E-value=3.1e+02 Score=24.36 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=41.9
Q ss_pred EcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHH
Q 017645 188 IPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEET 251 (368)
Q Consensus 188 IPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L 251 (368)
=|-|-.+..|+...|+++++..|+|-- ...+....+.+-..|.+..+..+.+.++.+
T Consensus 141 KP~p~~~~~~~~~~~~~p~~~l~vgD~-------~~di~aA~~aG~~~i~~~~~~~~~~~l~~~ 197 (199)
T PRK09456 141 KPEARIYQHVLQAEGFSAADAVFFDDN-------ADNIEAANALGITSILVTDKQTIPDYFAKV 197 (199)
T ss_pred CCCHHHHHHHHHHcCCChhHeEEeCCC-------HHHHHHHHHcCCEEEEecCCccHHHHHHhc
Confidence 477888999999999999998888532 123555556666778888888887766543
No 80
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=34.54 E-value=2.4e+02 Score=26.78 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=46.3
Q ss_pred eEEEEecCCCCcc----------chhHHHHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEE-EcCCCcHHHHHHHHHHH
Q 017645 82 GLYLVATPIGNLE----------DITLRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNR 149 (368)
Q Consensus 82 ~LyiVGtGpGn~~----------dITlrAl~~L~~a-DvI~~edtR~~~~LL~~~~i~~~~i-s~~~~ne~~~~~~Ii~~ 149 (368)
.+.=||.+..+|+ +-=..+++.|++. ++.++=||..+.-+-+.+....+++ +....+.. +++++.
T Consensus 39 diIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINdis~~~~~---~~~~~l 115 (258)
T cd00423 39 DIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADIINDVSGGRGD---PEMAPL 115 (258)
T ss_pred CEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHH
Confidence 4667777777664 2334567777665 8989999988754444443335655 23222221 333443
Q ss_pred Hh-CCCeEEEEccCCCCC
Q 017645 150 LK-QGEIVALISDAGTPG 166 (368)
Q Consensus 150 l~-~Gk~ValvSdaGdP~ 166 (368)
++ -|-.|+++...|+|.
T Consensus 116 ~~~~~~~vV~m~~~~~~~ 133 (258)
T cd00423 116 AAEYGAPVVLMHMDGTPQ 133 (258)
T ss_pred HHHcCCCEEEECcCCCCc
Confidence 33 255677765456654
No 81
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=34.33 E-value=36 Score=30.74 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCCHHHHHH-----------HHHHHcCCCHHHHHHHHHH
Q 017645 317 KELRGLISAGHNLSMAVK-----------LVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 317 ~~~~~l~~~~~~~k~a~k-----------~~a~~~~~~k~~vY~~~~~ 353 (368)
..++.|++.|++.++--+ .+|+.+|++|+.||...-.
T Consensus 17 ~Vvk~l~~~GisV~~g~~~~~gdIEI~~t~iAka~gVdRrvV~~Ti~~ 64 (167)
T COG2150 17 KVVKKLLESGISVKNGGKIYCGDIEIPITKIAKATGVDRRVVYATIEL 64 (167)
T ss_pred HHHHHHHHhCeeEccCCceeeCcEEechHHHHHHhCcchHhHHHHHHH
Confidence 456778888999887666 6899999999999987543
No 82
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=34.11 E-value=2.5e+02 Score=29.59 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=94.2
Q ss_pred hCCEEEEcCCCCcHHHHhh-cCC-CCcEEEcCCCcHHHHHHHHHHHHhCCC-eEEEEccCCCCCCCCcHHHHHHHhhhC-
Q 017645 106 SANVILSEDTRHSGKLLQY-YNI-KTPLLSYHKFNESQREQTVLNRLKQGE-IVALISDAGTPGISDPGTELAKLCVDE- 181 (368)
Q Consensus 106 ~aDvI~~edtR~~~~LL~~-~~i-~~~~is~~~~ne~~~~~~Ii~~l~~Gk-~ValvSdaGdP~isdpg~~Lv~~~~~~- 181 (368)
.+++++.+|...-+.++.. +.. ...+..+. ..++.++.+.++. +++++ |--+|... |-.+++.+++.
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~------~~~~al~~i~~~~~~lvl~-Di~mp~~~--Gl~ll~~i~~~~ 74 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAE------SAEEALEALSESPFDLVLL-DIRMPGMD--GLELLKEIKSRD 74 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC------CHHHHHHHHhcCCCCEEEE-ecCCCCCc--hHHHHHHHHhhC
Confidence 3567777765433333332 111 12233322 1334455555553 45555 99999665 57788877765
Q ss_pred -CCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhc----------------CCceEEEecCcccH
Q 017645 182 -KIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN----------------EVKTQIFYVPPHKL 244 (368)
Q Consensus 182 -gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~----------------~~~tlVlyesp~rl 244 (368)
+++|.++-|=+++..|..+...--.+|..- |.+.......++.... ....-++=.+| -+
T Consensus 75 ~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~K---P~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~-am 150 (464)
T COG2204 75 PDLPVIVMTGHGDIDTAVEALRLGAFDFLEK---PFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESP-AM 150 (464)
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcCcceeeeC---CCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCH-HH
Confidence 699999999999999998887655555443 4443221111221111 01222233333 23
Q ss_pred HHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 245 LQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 245 ~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
.++.+.+.+.-+-+.+|.|.=|-|.-.|-+- ...... ....+|+||-|-+|.
T Consensus 151 ~~l~~~i~kvA~s~a~VLI~GESGtGKElvA-----r~IH~~-S~R~~~PFVavNcaA 202 (464)
T COG2204 151 QQLRRLIAKVAPSDASVLITGESGTGKELVA-----RAIHQA-SPRAKGPFIAVNCAA 202 (464)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-----HHHHhh-CcccCCCceeeeccc
Confidence 4444444444445778888766665555432 111111 122367777776654
No 83
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.00 E-value=4.7e+02 Score=27.85 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCccchhHHH-HHHHh-hCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Q 017645 91 GNLEDITLRA-LRVLK-SANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS 168 (368)
Q Consensus 91 Gn~~dITlrA-l~~L~-~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~is 168 (368)
|+.++-=..| .+... .+|+|++ .--+..+++. ..+.|++..+ .+..+....+...-.-+.++++| |.|.+.
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIs--rG~ta~~i~~-~~~iPVv~i~-~s~~Dil~al~~a~~~~~~ia~v---g~~~~~ 109 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVA--GGSNGAYLKS-RLSLPVIVIK-PTGFDVMQALARARRIASSIGVV---THQDTP 109 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEE--CchHHHHHHH-hCCCCEEEec-CChhhHHHHHHHHHhcCCcEEEE---ecCccc
Q ss_pred Cc----------------------HHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCC
Q 017645 169 DP----------------------GTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (368)
Q Consensus 169 dp----------------------g~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp 204 (368)
.. ....++.+++.|+++.+ |.....-.+-..|++
T Consensus 110 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~vi--G~~~~~~~A~~~gl~ 165 (526)
T TIGR02329 110 PALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVV--GAGLITDLAEQAGLH 165 (526)
T ss_pred HHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEE--CChHHHHHHHHcCCc
No 84
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=33.88 E-value=3.9e+02 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=15.1
Q ss_pred CCEEEEcCccHHHHHHHhcCCCCCcEEE
Q 017645 183 IPVVPIPGASAFVAALSASGLATDEFTF 210 (368)
Q Consensus 183 i~V~vIPGiSA~~aA~a~sGlp~~~f~f 210 (368)
+-++++|-+.++. .+-.+|+|..++..
T Consensus 153 ~~~RvLP~~~~l~-~~~~~G~~~~~iia 179 (256)
T TIGR00715 153 VFVRVLPYPQALA-QALKLGFPSDRIIA 179 (256)
T ss_pred EEEEECCCchhhH-HHHHcCCChhcEEE
Confidence 5556666665544 55566666555433
No 85
>PF13565 HTH_32: Homeodomain-like domain
Probab=33.46 E-value=1e+02 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHcC--C--CHHHHHHH
Q 017645 313 DQLEKELRGLISA--GHNLSMAVKLVAQGTS--V--RRKTIYSL 350 (368)
Q Consensus 313 ~~~~~~~~~l~~~--~~~~k~a~k~~a~~~~--~--~k~~vY~~ 350 (368)
++..+.+.+++.. ..++++++..+.+.+| + +...||+.
T Consensus 33 ~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~ 76 (77)
T PF13565_consen 33 PEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI 76 (77)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence 3443455555443 5899999999999988 4 88999875
No 86
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=32.72 E-value=45 Score=24.72 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=24.2
Q ss_pred HHHHHH-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCCc
Q 017645 319 LRGLIS-AGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQ 358 (368)
Q Consensus 319 ~~~l~~-~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~~ 358 (368)
...|+. .+++.+ .+|+.+|+++..+|+.+-.+.++.
T Consensus 14 y~~Ll~~~~~t~~----eIa~~l~i~~~~v~~~L~~L~~~G 50 (68)
T PF01978_consen 14 YLALLKNGPATAE----EIAEELGISRSTVYRALKSLEEKG 50 (68)
T ss_dssp HHHHHHHCHEEHH----HHHHHHTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHH----HHHHHHCcCHHHHHHHHHHHHHCC
Confidence 344543 334444 466777999999999987776553
No 87
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=32.62 E-value=1.2e+02 Score=28.61 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHH
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~a 196 (368)
+..+.+.+....|...+.+| .|.|++..-...|++++++.|+++.+.-..+-...
T Consensus 60 ei~~~i~~~~~~~~~~V~lT-GGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 60 EVWQELKALGGGTPLHVSLS-GGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred HHHHHHHHHhCCCCCeEEEe-CCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 33444433322234445564 89999987678999999999999998888876554
No 88
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=32.49 E-value=77 Score=21.76 Aligned_cols=26 Identities=12% Similarity=-0.026 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 329 LSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 329 ~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.+...+.+|+..|++...|++++-.+
T Consensus 16 ~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 16 GRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 45556677888899999999987543
No 89
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=32.45 E-value=1.7e+02 Score=28.99 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=45.0
Q ss_pred cchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEc-cCCCCCCCCcHH
Q 017645 94 EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS-DAGTPGISDPGT 172 (368)
Q Consensus 94 ~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvS-daGdP~isdpg~ 172 (368)
---+..++++|++||+|+-... . ++-.. -|.+ ..+.|.+.+++ ..|+.|| -.|.--+++|..
T Consensus 170 a~a~peal~AI~~AD~IIlGPg-s---p~TSI---~P~L---------lVpgIreAL~~-a~vV~Vspiig~~~v~GpA~ 232 (297)
T TIGR01819 170 ASIAPKVLEAIRKEDNILIGPS-N---PITSI---GPIL---------SLPGIREALRD-KKVVAVSPIVGNAPVSGPAG 232 (297)
T ss_pred CCCCHHHHHHHHhCCEEEECCC-c---cHHHh---hhhc---------CchhHHHHHHc-CCEEEEccCcCCCcCCChHH
Confidence 4578999999999997776432 1 11110 0111 13456666776 7777776 446667888988
Q ss_pred HHHHHhhhCCCCE
Q 017645 173 ELAKLCVDEKIPV 185 (368)
Q Consensus 173 ~Lv~~~~~~gi~V 185 (368)
.+..+. |+++
T Consensus 233 ~~m~a~---g~e~ 242 (297)
T TIGR01819 233 KLMAAV---GVEV 242 (297)
T ss_pred HHHHHc---CCCc
Confidence 886654 5544
No 90
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=32.27 E-value=4.4e+02 Score=24.88 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEccCCCCCC--------CC-cHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC-c
Q 017645 139 ESQREQTVLNRLKQ-GEIVALISDAGTPGI--------SD-PGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-E 207 (368)
Q Consensus 139 e~~~~~~Ii~~l~~-Gk~ValvSdaGdP~i--------sd-pg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~-~ 207 (368)
|.+....|...... ...|++++ |++-. .+ ....+...+.+. +.|..+.-. ...+|.+ +
T Consensus 131 E~~lt~aI~~v~~~~~~~V~~l~--ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~--------~~~IP~~~d 199 (271)
T PF09822_consen 131 EYELTSAIRRVTSDEKPKVYFLT--GHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA--------NEEIPDDAD 199 (271)
T ss_pred HHHHHHHHHHHhcccCceEEEEc--cccccccccccccCcchHHHHHHHHHhc-CceeecCCc--------ccccCCCCC
Confidence 45555666655544 35677884 66666 33 335566666666 888877654 4455443 4
Q ss_pred EEEEEecCCC--chhhHHHHHhhhcCCceEEEecCcc
Q 017645 208 FTFVGFLPKH--ARSRTERLMLSANEVKTQIFYVPPH 242 (368)
Q Consensus 208 f~fvGflp~~--~~~~~~~L~~l~~~~~tlVlyesp~ 242 (368)
..++. -|.. .......|+.....++.++++..|.
T Consensus 200 ~Lvi~-~P~~~ls~~e~~~l~~yl~~GG~ll~~~d~~ 235 (271)
T PF09822_consen 200 VLVIA-GPKTDLSEEELYALDQYLMNGGKLLILLDPF 235 (271)
T ss_pred EEEEE-CCCCCCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 55542 2554 1223466777666677777666665
No 91
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=32.01 E-value=5.2e+02 Score=27.47 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=66.4
Q ss_pred CeEEEEecCCCCccc-hhHHHHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEE-EcCCCcHHHHHHHHHHHHhC-CCeE
Q 017645 81 PGLYLVATPIGNLED-ITLRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQ-GEIV 156 (368)
Q Consensus 81 g~LyiVGtGpGn~~d-ITlrAl~~L~~a-DvI~~edtR~~~~LL~~~~i~~~~i-s~~~~ne~~~~~~Ii~~l~~-Gk~V 156 (368)
..+.=||.+++.|+. --..+++.|++. |+.++-||..+..+-..+.-...++ +....+ .+.+...+.. |-.+
T Consensus 179 ADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~~----~d~~~~l~a~~g~~v 254 (499)
T TIGR00284 179 ADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMPDVEN----AVELASEKKLPEDAF 254 (499)
T ss_pred CCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEECCccc----hhHHHHHHHHcCCeE
Confidence 458889999887752 255778888876 8889999988765555444345554 332222 3344443433 5566
Q ss_pred EEEccCCCCCCCCcHHHHHHHhhhCCC-CEEEEcCccH
Q 017645 157 ALISDAGTPGISDPGTELAKLCVDEKI-PVVPIPGASA 193 (368)
Q Consensus 157 alvSdaGdP~isdpg~~Lv~~~~~~gi-~V~vIPGiSA 193 (368)
+++.. ..+.-+.-....++.+.+.|+ ++.+=||+..
T Consensus 255 Vlm~~-~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 255 VVVPG-NQPTNYEELAKAVKKLRTSGYSKVAADPSLSP 291 (499)
T ss_pred EEEcC-CCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc
Confidence 66642 111112334566777888898 7777788764
No 92
>PRK13018 cell division protein FtsZ; Provisional
Probab=31.84 E-value=1.9e+02 Score=29.51 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=52.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCC----------Cc------HHHHH
Q 017645 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK----------FN------ESQRE 143 (368)
Q Consensus 80 ~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~----------~n------e~~~~ 143 (368)
..++.|||+|=|.-.-+..-...-++.++.|++ +|.. +-|+....+.++. +.+ .. ..+..
T Consensus 28 ~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iai-NTD~--q~L~~~~a~~ki~-iG~~~t~G~GaG~dp~~G~~aaee~~ 103 (378)
T PRK13018 28 NPKIVVVGCGGAGNNTINRLYEIGIEGAETIAI-NTDA--QHLAMIKADKKIL-IGKSLTRGLGAGGDPEVGRKAAEESR 103 (378)
T ss_pred CCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEE-ECCH--HHHhcCCCCcEEe-cCCccCCCCCCCCChHHHHHHHHHHH
Confidence 357899998866432222222223466899999 5633 4445433333322 211 01 12334
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCCcH--HHHHHHhhhCC
Q 017645 144 QTVLNRLKQGEIVALISDAGTPGISDPG--TELAKLCVDEK 182 (368)
Q Consensus 144 ~~Ii~~l~~Gk~ValvSdaGdP~isdpg--~~Lv~~~~~~g 182 (368)
++|.+.+. +-+.+++ .+|.=+=.+.| ..+.+.+++.+
T Consensus 104 d~I~~~le-~~D~vfI-~aGLGGGTGSGaapvIa~iake~g 142 (378)
T PRK13018 104 DEIKEVLK-GADLVFV-TAGMGGGTGTGAAPVVAEIAKEQG 142 (378)
T ss_pred HHHHHHhc-CCCEEEE-EeeccCcchhhHHHHHHHHHHHcC
Confidence 55666654 5677777 48887765554 45566666655
No 93
>PLN02335 anthranilate synthase
Probab=31.75 E-value=49 Score=30.95 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=30.6
Q ss_pred HHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcC
Q 017645 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (368)
Q Consensus 147 i~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPG 190 (368)
+..-++.++|++| |.||... +.+++.+++.|++++++|.
T Consensus 12 ~~~~~~~~~ilvi-D~~dsft----~~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 12 INSSKQNGPIIVI-DNYDSFT----YNLCQYMGELGCHFEVYRN 50 (222)
T ss_pred hcccCccCcEEEE-ECCCCHH----HHHHHHHHHCCCcEEEEEC
Confidence 4445677889999 9888665 4577778888999999986
No 94
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=31.55 E-value=2.3e+02 Score=29.58 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHH
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~ 195 (368)
...+.+.+.+. +-+++++||.|--.+.. ...+++.+++.|++|-+=|=..-+.
T Consensus 132 ~ll~~~~~~l~-~~~~vVLSDY~KG~L~~-~q~~I~~ar~~~~pVLvDPKg~Df~ 184 (467)
T COG2870 132 KLLEKIKNALK-SFDALVLSDYAKGVLTN-VQKMIDLAREAGIPVLVDPKGKDFE 184 (467)
T ss_pred HHHHHHHHHhh-cCCEEEEeccccccchh-HHHHHHHHHHcCCcEEECCCCcchh
Confidence 34455555555 46889999999888766 7889999999999999988776543
No 95
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=31.01 E-value=93 Score=20.30 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 330 SMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 330 k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.+..+.+|+..|.+++++-+.++..
T Consensus 11 ~~~l~~~a~~~g~s~s~~ir~ai~~ 35 (39)
T PF01402_consen 11 YERLDELAKELGRSRSELIREAIRE 35 (39)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556677888888888888777653
No 96
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=30.96 E-value=1e+02 Score=24.99 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
.+..-+.+|.++++.++.+.+.++.++..+=..+
T Consensus 4 ~l~~gi~~G~~~~~iak~i~~~~~~~~~~A~~ia 37 (108)
T TIGR01641 4 ILADGVQRGLGPNELAKRLRKELGVQKHYAQRLA 37 (108)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCccHHHHHHHH
Confidence 3445556799999999999999999877654433
No 97
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=30.73 E-value=1.1e+02 Score=24.68 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 317 KELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 317 ~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
..+..++++|.+.+++ |+.+|+++.-+|+ +..
T Consensus 41 ~~I~~ll~~G~S~~eI----A~~LgISrsTIyR-i~R 72 (88)
T TIGR02531 41 LQVAKMLKQGKTYSDI----EAETGASTATISR-VKR 72 (88)
T ss_pred HHHHHHHHCCCCHHHH----HHHHCcCHHHHHH-HHH
Confidence 3455677788877664 5666999999999 443
No 98
>PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA); InterPro: IPR010260 This entry is represents phage P4, Orf88. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. In Escherichia coli phage P4 Orf 88 is similar to AlpA of the CP4-57 cryptic prophage []. AlpA acts as a positive transcriptional regulator of slpA, a gene linked to alpA and necessary for suppression of lon mutants [, ]. The sequence of slpA suggests that it encodes an integrase gene closely related to phage P4 int and that both alpA and slpA are part of a cryptic P4-like prophage. Increase in alpA expression increases SlpA synthesis. Increased SlpA leads, in turn, to the excision and loss of the cryptic prophage. ; PDB: 1Z4H_A.
Probab=30.70 E-value=53 Score=23.22 Aligned_cols=21 Identities=43% Similarity=0.455 Sum_probs=16.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 017645 333 VKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 333 ~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.+.|++.+|+++..+|++.-+
T Consensus 6 ~~ev~~~~g~s~~ti~~~~k~ 26 (51)
T PF05930_consen 6 IKEVAELLGVSRSTIYRLIKD 26 (51)
T ss_dssp HHHHHHHHSS-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhc
Confidence 466788889999999998643
No 99
>smart00351 PAX Paired Box domain.
Probab=29.90 E-value=1.1e+02 Score=25.83 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKF 355 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~ 355 (368)
.+-.+...|.+.+++ |+.+|++++-||+++-...
T Consensus 25 riv~~~~~G~s~~~i----A~~~gvs~~tV~kwi~r~~ 58 (125)
T smart00351 25 RIVELAQNGVRPCDI----SRQLCVSHGCVSKILGRYY 58 (125)
T ss_pred HHHHHHHcCCCHHHH----HHHHCcCHHHHHHHHHHHH
Confidence 343455578877654 7788999999999876543
No 100
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=29.78 E-value=1.4e+02 Score=20.12 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=21.9
Q ss_pred HHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 321 ~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.+...|++.++++ +.+|++++.+|+..-..
T Consensus 13 ~~~~~g~s~~eia----~~l~is~~tv~~~~~~~ 42 (58)
T smart00421 13 RLLAEGLTNKEIA----ERLGISEKTVKTHLSNI 42 (58)
T ss_pred HHHHcCCCHHHHH----HHHCCCHHHHHHHHHHH
Confidence 3456788876655 55699999999886544
No 101
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=29.74 E-value=4.1e+02 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=16.0
Q ss_pred EeehhhHHHHHHhCCCCCcEEEEEeCCC
Q 017645 276 RGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (368)
Q Consensus 276 ~gtl~el~~~~~~~~~kge~vlvi~g~~ 303 (368)
.++.+++.+.+......+.-+++..|..
T Consensus 105 ~~~~~~L~~~i~~~~~~~~~il~~~g~~ 132 (239)
T cd06578 105 EGDSEGLLELLELQDGKGKRILRPRGGR 132 (239)
T ss_pred ccCHHHHHHHHHhcCCCCCEEEEEcCcc
Confidence 4566667666655434566566665543
No 102
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=29.67 E-value=67 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
|..+|.++.+|+.+|+++.++...+-.
T Consensus 1 Mtk~eli~~ia~~~~~s~~~v~~vl~~ 27 (90)
T PF00216_consen 1 MTKKELIKRIAEKTGLSKKDVEAVLDA 27 (90)
T ss_dssp EBHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 457899999999999999999876543
No 103
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.
Probab=29.64 E-value=47 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q 017645 329 LSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 329 ~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
.+.-++.+|+.||+||+.|++-+
T Consensus 18 ~~aTVR~~Ak~FGvSKSTVHkDv 40 (82)
T PF12116_consen 18 TKATVRQAAKVFGVSKSTVHKDV 40 (82)
T ss_dssp H---HHHHHHHHTS-HHHHHHHH
T ss_pred cccHHHHHHHHHCCcHHHHHHHH
Confidence 46677888999999999999876
No 104
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.61 E-value=1.9e+02 Score=25.17 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=51.3
Q ss_pred HHHhhCCEEEEcCCCCcHHHHhhc-CCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCC----cHHHHHH
Q 017645 102 RVLKSANVILSEDTRHSGKLLQYY-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISD----PGTELAK 176 (368)
Q Consensus 102 ~~L~~aDvI~~edtR~~~~LL~~~-~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isd----pg~~Lv~ 176 (368)
+.|....++..+ -+.+.|+.. |+....+ .+.+. .. ...+.+.+++|+--.++. .-||.-.. -++.|.+
T Consensus 28 ~ll~Gf~l~AT~---gTa~~L~~~~Gi~v~~v-i~~~~-gg-~~~i~~~I~~g~i~lVIn-t~dp~~~~~~~~D~~~IRR 100 (142)
T PRK05234 28 DLLEQHELYATG---TTGGLIQEATGLDVTRL-LSGPL-GG-DQQIGALIAEGKIDMLIF-FRDPLTAQPHDPDVKALLR 100 (142)
T ss_pred HHhcCCEEEEeC---hHHHHHHhccCCeeEEE-EcCCC-CC-chhHHHHHHcCceeEEEE-ecCCCCCCcccchHHHHHH
Confidence 344455655443 455677776 8766555 22211 01 255788888887655553 33334222 2678889
Q ss_pred HhhhCCCCEE-EEcCccHHHHHHHh
Q 017645 177 LCVDEKIPVV-PIPGASAFVAALSA 200 (368)
Q Consensus 177 ~~~~~gi~V~-vIPGiSA~~aA~a~ 200 (368)
.|.+.|+++. -+.++.++..|+..
T Consensus 101 ~Av~~~IP~~T~l~tA~a~~~al~~ 125 (142)
T PRK05234 101 LADVWNIPVATNRATADFLISSLLF 125 (142)
T ss_pred HHHHcCCCEEcCHHHHHHHHHHHhc
Confidence 9999998773 33444444444444
No 105
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=29.40 E-value=5.3e+02 Score=24.92 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=67.9
Q ss_pred eEEEEecCCCCccchhHHHHHHHh----hCCEEEEcCCCCc--HHHHhhcCCCCcEEEcCC-----------CcHHHHHH
Q 017645 82 GLYLVATPIGNLEDITLRALRVLK----SANVILSEDTRHS--GKLLQYYNIKTPLLSYHK-----------FNESQREQ 144 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~----~aDvI~~edtR~~--~~LL~~~~i~~~~is~~~-----------~ne~~~~~ 144 (368)
++-+||.| + |--.-.+.++ .++.++.+|+... +.+.+.++.... ....+ ...+...+
T Consensus 2 ~vgiVGcG--a---IG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~-s~ide~~~~~DlvVEaAS~~Av~e 75 (255)
T COG1712 2 KVGIVGCG--A---IGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV-SDIDELIAEVDLVVEAASPEAVRE 75 (255)
T ss_pred eEEEEecc--H---HHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc-ccHHHHhhccceeeeeCCHHHHHH
Confidence 35567765 3 2233344454 5888888885322 222333332211 11111 11234456
Q ss_pred HHHHHHhCCCeEEEEccCCCCCCCCcHHH--HHHHhhhCCCCEEEEcCccHHHHHHHhcCC-CCCcEEEEEe
Q 017645 145 TVLNRLKQGEIVALISDAGTPGISDPGTE--LAKLCVDEKIPVVPIPGASAFVAALSASGL-ATDEFTFVGF 213 (368)
Q Consensus 145 ~Ii~~l~~Gk~ValvSdaGdP~isdpg~~--Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGl-p~~~f~fvGf 213 (368)
...+.|++|.+|.++| .| .++|++.. +...++..|-++.+.+|+---+=+++..-+ -..++.+.+.
T Consensus 76 ~~~~~L~~g~d~iV~S-VG--ALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~aar~g~i~~V~lttr 144 (255)
T COG1712 76 YVPKILKAGIDVIVMS-VG--ALADEGLRERLRELAKCGGARVYLPSGAIGGLDALAAARVGGIEEVVLTTR 144 (255)
T ss_pred HhHHHHhcCCCEEEEe-ch--hccChHHHHHHHHHHhcCCcEEEecCccchhHHHHHHhhcCCeeEEEEEee
Confidence 6778889999999998 34 45577643 444566678899999998544444433332 2345666543
No 106
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=29.37 E-value=5.7e+02 Score=25.32 Aligned_cols=40 Identities=25% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhC--CCeEEEEccCCCCCCCCc--HHHHHHHhhh
Q 017645 140 SQREQTVLNRLKQ--GEIVALISDAGTPGISDP--GTELAKLCVD 180 (368)
Q Consensus 140 ~~~~~~Ii~~l~~--Gk~ValvSdaGdP~isdp--g~~Lv~~~~~ 180 (368)
.+..+++++.+++ |-.-+++| .|||++... -.++++.+.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~ls-GGDPLl~~d~~L~~ll~~L~~ 187 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILIS-GGDPLMAKDHELEWLLKRLEE 187 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEE-CCccccCCHHHHHHHHHHHHh
Confidence 3456667777753 33445664 799998764 4567777665
No 107
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=29.21 E-value=1.8e+02 Score=25.25 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=11.0
Q ss_pred CCeEEEEccCCCCCCCC
Q 017645 153 GEIVALISDAGTPGISD 169 (368)
Q Consensus 153 Gk~ValvSdaGdP~isd 169 (368)
.+.+.++|| |.|...+
T Consensus 104 ~~~iiliTD-G~~~~~~ 119 (174)
T cd01454 104 RKILLVISD-GEPNDLD 119 (174)
T ss_pred CcEEEEEeC-CCcCccc
Confidence 455778876 8887654
No 108
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=29.12 E-value=95 Score=21.76 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=25.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCCc
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQ 358 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~~ 358 (368)
.+..|++.+-+ --++.+|+.+|++++.||+-+-.+....
T Consensus 5 il~~L~~~~~~--it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 5 ILKLLLESKEP--ITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHTTTS--BEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCC--cCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 34445444332 4567788889999999999876664433
No 109
>PRK05443 polyphosphate kinase; Provisional
Probab=29.07 E-value=2.6e+02 Score=31.00 Aligned_cols=85 Identities=12% Similarity=0.194 Sum_probs=55.1
Q ss_pred HHHHHhhCCEEEEcCCCCcH----HHHhhcCCCCcEE-----EcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCc
Q 017645 100 ALRVLKSANVILSEDTRHSG----KLLQYYNIKTPLL-----SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDP 170 (368)
Q Consensus 100 Al~~L~~aDvI~~edtR~~~----~LL~~~~i~~~~i-----s~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdp 170 (368)
-.++|++=|+++.. .+++- ++++....+..++ .|.-......++.+++++++|++|-++.+.--++....
T Consensus 332 if~~I~~~DiLLh~-PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~ 410 (691)
T PRK05443 332 IFAAIREKDILLHH-PYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEA 410 (691)
T ss_pred HHHHHhhCCEEEEC-CccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHH
Confidence 46889999999996 35542 3333333333332 23222346778999999999999988854333333334
Q ss_pred HHHHHHHhhhCCCCE
Q 017645 171 GTELAKLCVDEKIPV 185 (368)
Q Consensus 171 g~~Lv~~~~~~gi~V 185 (368)
.....+.+.++|++|
T Consensus 411 n~~~~~~L~~aGv~V 425 (691)
T PRK05443 411 NIRWARRLEEAGVHV 425 (691)
T ss_pred HHHHHHHHHHcCCEE
Confidence 556678888899877
No 110
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.01 E-value=3.1e+02 Score=22.09 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=26.3
Q ss_pred HhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCcc
Q 017645 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (368)
Q Consensus 150 l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiS 192 (368)
+..+.-+.++|..|.+ .....+++.+++.|+++.+|-+-.
T Consensus 58 ~~~~~~~i~iS~~g~~---~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 58 LTPGDVVIAISFSGET---KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred CCCCCEEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 4455556666766775 234567788888888887776643
No 111
>PF12728 HTH_17: Helix-turn-helix domain
Probab=28.98 E-value=62 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=15.4
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 017645 334 KLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 334 k~~a~~~~~~k~~vY~~~~~ 353 (368)
+.+|+.+|++++.+|+++-+
T Consensus 5 ~e~a~~l~is~~tv~~~~~~ 24 (51)
T PF12728_consen 5 KEAAELLGISRSTVYRWIRQ 24 (51)
T ss_pred HHHHHHHCcCHHHHHHHHHc
Confidence 44566779999999998643
No 112
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=28.80 E-value=2.8e+02 Score=26.53 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=15.6
Q ss_pred CCCCEEEEcCccHHHHHHHhcCCCCCcEEEE
Q 017645 181 EKIPVVPIPGASAFVAALSASGLATDEFTFV 211 (368)
Q Consensus 181 ~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv 211 (368)
..+-++++|-+.+ .+|++..++...
T Consensus 153 ~r~~~RvLp~~~~------~~g~~~~~iia~ 177 (249)
T PF02571_consen 153 ERLFARVLPTPES------ALGFPPKNIIAM 177 (249)
T ss_pred CEEEEEECCCccc------cCCCChhhEEEE
Confidence 3456677887776 666665554443
No 113
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=28.65 E-value=4.6e+02 Score=26.88 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCcEEEcCCCcHHHHHHHHHHHHhC-CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC
Q 017645 128 KTPLLSYHKFNESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD 206 (368)
Q Consensus 128 ~~~~is~~~~ne~~~~~~Ii~~l~~-Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~ 206 (368)
..|++.|+...-.+..+.+.+.... |-+|.+.. =..|.. .+++.+.+.|..+++.-+-= +-.|+.+ |+|.+
T Consensus 26 gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAv-KAn~~~-----~il~~l~~~g~g~Dv~S~gE-l~~al~a-G~~~~ 97 (394)
T COG0019 26 GTPVYVYDEATLRRNARELKSAFPGSGAKVFYAV-KANSNP-----AILRLLAEEGSGFDVASLGE-LELALAA-GFPPE 97 (394)
T ss_pred CCCEEEEcHHHHHHHHHHHHHHhccCCceEEEEE-cCCCCH-----HHHHHHHHhCCCceecCHHH-HHHHHHc-CCChh
Confidence 4778877765555566666665543 35777774 345443 47777888877777765443 3444444 99999
Q ss_pred cEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHH
Q 017645 207 EFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQF 247 (368)
Q Consensus 207 ~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~ 247 (368)
++.|.| |.+. .+.++.+.+.+-..|.+++-..+..+
T Consensus 98 ~I~f~g--~~ks---~~ei~~a~e~gi~~i~vdS~~El~~l 133 (394)
T COG0019 98 RIVFSG--PAKS---EEEIAFALELGIKLINVDSEEELERL 133 (394)
T ss_pred hEEECC--CCCC---HHHHHHHHHcCCcEEEeCCHHHHHHH
Confidence 998874 4444 45677777777777888886665443
No 114
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=28.43 E-value=3e+02 Score=26.31 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred HHHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEE-EcCCCcHHHHHHHHHHHHh-CCCeEEEEccCCCCCC
Q 017645 99 RALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLK-QGEIVALISDAGTPGI 167 (368)
Q Consensus 99 rAl~~L~~a-DvI~~edtR~~~~LL~~~~i~~~~i-s~~~~ne~~~~~~Ii~~l~-~Gk~ValvSdaGdP~i 167 (368)
.+++.|++. |+.++=||..+.-+-..+.....++ +....+.. +++++.++ -|-.|+++...|.|--
T Consensus 66 ~~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~---~~~~~l~~~~~~~vV~m~~~g~p~~ 134 (257)
T cd00739 66 PVLEALRGELDVLISVDTFRAEVARAALEAGADIINDVSGGSDD---PAMLEVAAEYGAPLVLMHMRGTPKT 134 (257)
T ss_pred HHHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHHHHHcCCCEEEECCCCCCcc
Confidence 356777765 9999999988755444443345555 23322221 23333333 2556777756688754
No 115
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=28.02 E-value=2.5e+02 Score=23.99 Aligned_cols=81 Identities=15% Similarity=0.301 Sum_probs=50.1
Q ss_pred hCCEEEEcCCCCcHHHHhhcCCCCcEE-EcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCC
Q 017645 106 SANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (368)
Q Consensus 106 ~aDvI~~edtR~~~~LL~~~~i~~~~i-s~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~ 184 (368)
+.|+++.+|-++.++. +. +.+... .-|... .+++.+.+..+-.+.++ -.|-.+.-...-+..+.+++.+++
T Consensus 20 ~~DIvi~~dG~v~rr~-K~--lskrK~GTSHkl~----~eEle~~lee~~E~ivv-GTG~~G~l~l~~ea~e~~r~k~~~ 91 (121)
T COG1504 20 EHDIVIRPDGKVERRE-KE--LSKRKYGTSHKLA----LEELEELLEEGPEVIVV-GTGQSGMLELSEEAREFFRKKGCE 91 (121)
T ss_pred cccEEEecCCceehhh-hh--hhhhhcCcccccC----HHHHHHHHhcCCcEEEE-ecCceeEEEeCHHHHHHHHhcCCe
Confidence 5799999987665432 11 111111 112211 23344445567777777 467777777777778888999999
Q ss_pred EEEEcCccHH
Q 017645 185 VVPIPGASAF 194 (368)
Q Consensus 185 V~vIPGiSA~ 194 (368)
|...|=+-|+
T Consensus 92 vi~~pT~EAi 101 (121)
T COG1504 92 VIELPTPEAI 101 (121)
T ss_pred EEEeCCHHHH
Confidence 9998877654
No 116
>cd00131 PAX Paired Box domain
Probab=27.93 E-value=1.3e+02 Score=25.66 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 017645 315 LEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKF 355 (368)
Q Consensus 315 ~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~ 355 (368)
....+-.+.+.|++.+++ |+.+|++++-||++.-...
T Consensus 22 ~R~rIv~~~~~G~s~~~i----A~~~~Vs~~tV~r~i~r~~ 58 (128)
T cd00131 22 IRQRIVELAQSGIRPCDI----SRQLRVSHGCVSKILNRYY 58 (128)
T ss_pred HHHHHHHHHHcCCCHHHH----HHHHCcCHHHHHHHHHHHH
Confidence 333444566789988877 6777999999999876543
No 117
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=27.71 E-value=5.2e+02 Score=24.33 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEE
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTF 210 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~f 210 (368)
.+..+.+.+.+.+.++|.++. .|. -+....++...+...|.++...........++. .+..+++.+
T Consensus 115 ~~~l~~~~~~i~~a~~I~i~G-~G~--s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~--~~~~~Dv~I 180 (278)
T PRK11557 115 EEKLHECVTMLRSARRIILTG-IGA--SGLVAQNFAWKLMKIGINAVAERDMHALLATVQ--ALSPDDLLL 180 (278)
T ss_pred HHHHHHHHHHHhcCCeEEEEe-cCh--hHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHH--hCCCCCEEE
Confidence 345677788888888888883 342 233556777777777887776555444333333 334445433
No 118
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=27.49 E-value=1e+02 Score=27.32 Aligned_cols=39 Identities=33% Similarity=0.554 Sum_probs=29.2
Q ss_pred hCCCeEEEEccCCCCCCCCcHHHHHHHhhhC-CCCEEEEcCcc
Q 017645 151 KQGEIVALISDAGTPGISDPGTELAKLCVDE-KIPVVPIPGAS 192 (368)
Q Consensus 151 ~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~-gi~V~vIPGiS 192 (368)
+++++|+++ |.|++.-|..+|.....+. +.+-..||...
T Consensus 17 ~~~~kIvf~---Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d 56 (147)
T PF09897_consen 17 KDGEKIVFI---GSPGVCTPFAELFAYAIRDKVKEQYFIPDAD 56 (147)
T ss_dssp TT-SEEEEE---E-TTTTHHHHHHHHHHTTTS--EEEEEETT-
T ss_pred cCCCeEEEe---CCCcccccHHHHHHHHHhhhccceeecCCCC
Confidence 888999998 9999999999999877654 56778888764
No 119
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.11 E-value=1.4e+02 Score=25.00 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Q 017645 314 QLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352 (368)
Q Consensus 314 ~~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~ 352 (368)
++.+.+-...++|.+..+|+ +.|+++++.||+++-
T Consensus 6 DlR~rVl~~~~~g~s~~eaa----~~F~VS~~Tv~~W~k 40 (119)
T PF01710_consen 6 DLRQRVLAYIEKGKSIREAA----KRFGVSRNTVYRWLK 40 (119)
T ss_pred HHHHHHHHHHHccchHHHHH----HHhCcHHHHHHHHHH
Confidence 35555556677788877765 568999999999965
No 120
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=26.80 E-value=22 Score=33.96 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=43.9
Q ss_pred CccccchhhhHHHHhhhC-CCccccccccchhhhhhhhhcc-CCCcchhhhhhhhccC
Q 017645 1 MRLVQRLPLMANSLATTG-LSKTSWQSRPLLSFLRTQTLLN-SLSLYPKINYLLLCSC 56 (368)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 56 (368)
|..-+.++.+++.|+..| +.+.=|++|.+|.-++--.+.+ .....||||-+++...
T Consensus 173 MK~~~~~~~i~~~l~~~g~~~~~~~v~R~~m~~e~i~~l~~~~~~~~~Yfs~ii~~r~ 230 (234)
T COG2243 173 MKVGRNFEKLRRLLAKLGLLDRAVYVERATMAGEKIVRLAEAERDEKPYFSTILVRRK 230 (234)
T ss_pred EecCCcHHHHHHHHHhcCCCceEEEEeecCCCCcEEEeccccCcccCCceEEEEEecc
Confidence 344568899999999999 7777789999999888777666 4455599997776543
No 121
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=26.35 E-value=4.1e+02 Score=26.55 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCceeeeecccCCC-ccE--------EEEeehhhHHHHHHhCCCCCcEEEEEeCCCcCccCCCChHHHHHH
Q 017645 248 LEETSLLFGYSRRCVIAREITKM-HEE--------FWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKE 318 (368)
Q Consensus 248 l~~L~~~~g~~~~v~v~~eLtk~-~E~--------i~~gtl~el~~~~~~~~~kge~vlvi~g~~~~~~~~~~~~~~~~~ 318 (368)
|+.|...+. ..+++|+.+-... -|. +..-+++.+.+.+. ||...|..++..-... .+.+.+ +.
T Consensus 61 Lkkla~~l~-aspivVg~r~~~~~LE~GVVY~R~gV~~vs~~Tf~~~~~-----Ge~P~v~a~rGG~yV~-Idge~L-re 132 (313)
T COG1395 61 LKKLAKSLL-ASPIVVGLRTKNEPLEDGVVYERYGVPAVSPETFYDYVE-----GEPPYVYAARGGFYVK-IDGEKL-RE 132 (313)
T ss_pred HHHHHHHhC-CCceEEEEecCCCccccceEEEecCceeeCHHHHHHHhC-----CCCceEEecCCeEEEE-echHHH-HH
Confidence 344444565 5788888766543 222 33457788877753 5555666555432111 222222 22
Q ss_pred HHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHH
Q 017645 319 LRGLISAGHNLSMAVKLVAQGTSVRRKTIYSL 350 (368)
Q Consensus 319 ~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~ 350 (368)
.+ .++|+|..+.|+.+ |++|+.||+.
T Consensus 133 ~R--ee~glSlG~lA~~l----gVSRktV~~Y 158 (313)
T COG1395 133 KR--EEMGLSLGDLATML----GVSRKTVYKY 158 (313)
T ss_pred HH--HHcCcCHHHHHHHh----CccHHHHHHh
Confidence 22 25799998877665 9999999975
No 122
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.98 E-value=5.8e+02 Score=24.26 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEE
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTF 210 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~f 210 (368)
+..+++.+.+.+-++|.+.. .|. -+..+.++...+...|+++.+++........ ...+..+++.+
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G-~G~--S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~--~~~~~~~Dl~I 192 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYG-AGG--SAAIARDVQHKFLRIGVRCQAYDDAHIMLMS--AALLQEGDVVL 192 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEE-ecH--HHHHHHHHHHHHhhCCCeEEEcCCHHHHHHH--HhcCCCCCEEE
Confidence 45677788887777777662 343 3345566767777778888877766543322 22344455444
No 123
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=1.7e+02 Score=27.15 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=32.6
Q ss_pred HHHHHHHHhC---CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCc
Q 017645 143 EQTVLNRLKQ---GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (368)
Q Consensus 143 ~~~Ii~~l~~---Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGi 191 (368)
+++|++.+++ +..-+.+ ..|.|++..--..|+..+++.|+++.+--+-
T Consensus 58 ~~~I~~~i~~~~~~~~~V~l-TGGEP~~~~~l~~Ll~~l~~~g~~~~lETng 108 (212)
T COG0602 58 ADEILADIKSLGYKARGVSL-TGGEPLLQPNLLELLELLKRLGFRIALETNG 108 (212)
T ss_pred HHHHHHHHHhcCCCcceEEE-eCCcCCCcccHHHHHHHHHhCCceEEecCCC
Confidence 4455555543 2233444 3999988877889999999999988766533
No 124
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=25.91 E-value=2.4e+02 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEE
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~ 186 (368)
+..+.+.+.+.+-++|+++-|...+.-......+.+.+.+.|+++.
T Consensus 119 ~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~ 164 (294)
T PF04392_consen 119 KQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELV 164 (294)
T ss_dssp HHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEE
Confidence 3344444444455788666455544222222333444445565554
No 125
>PHA00675 hypothetical protein
Probab=25.74 E-value=1.7e+02 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=22.9
Q ss_pred HHHHHHH-HCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 317 KELRGLI-SAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 317 ~~~~~l~-~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
+.|+.+. ..|+|.. .+|+.||++++.||+..
T Consensus 29 ~~IR~l~~r~G~s~~----~IA~~fGVsrstV~~I~ 60 (78)
T PHA00675 29 ERIRELHEVEGMSYA----VLAEKFEQSKGAIAKIC 60 (78)
T ss_pred HHHHHHHHhcCccHH----HHHHHhCCCHHHHHHHH
Confidence 4566666 5777654 56788999999999864
No 126
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=25.59 E-value=6.4e+02 Score=24.63 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=54.7
Q ss_pred CCeEEEEecCCCCccchhH--HHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHH---HHHHHHHHHHh-CC
Q 017645 80 EPGLYLVATPIGNLEDITL--RALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES---QREQTVLNRLK-QG 153 (368)
Q Consensus 80 ~g~LyiVGtGpGn~~dITl--rAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~---~~~~~Ii~~l~-~G 153 (368)
..++=|.=.|.|+ ||+ .+++.|=+.|+|++.|+.. ++|....++ ++.-++.+.+. ++
T Consensus 5 ~~~IgvFDSGVGG---LsVlrei~~~LP~e~~iY~~D~a~--------------~PYG~ks~e~I~~~~~~i~~~l~~~~ 67 (269)
T COG0796 5 QPPIGVFDSGVGG---LSVLREIRRQLPDEDIIYVGDTAR--------------FPYGEKSEEEIRERTLEIVDFLLERG 67 (269)
T ss_pred CCeEEEEECCCCc---HHHHHHHHHHCCCCcEEEEecCCC--------------CCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3457788889887 554 5567778999999999743 133333333 33344555553 44
Q ss_pred CeEEEE-ccCCCCCCCCcHHHHHHHhhhC-CCCE-EEEcCccHHHHHHHhcC
Q 017645 154 EIVALI-SDAGTPGISDPGTELAKLCVDE-KIPV-VPIPGASAFVAALSASG 202 (368)
Q Consensus 154 k~Valv-SdaGdP~isdpg~~Lv~~~~~~-gi~V-~vIPGiSA~~aA~a~sG 202 (368)
-+.+++ + . .-....++.+++. +++| -+|||+.+. .+..+.|
T Consensus 68 ik~lVIAC---N----TASa~al~~LR~~~~iPVvGviPaik~A-~~~t~~~ 111 (269)
T COG0796 68 IKALVIAC---N----TASAVALEDLREKFDIPVVGVIPAIKPA-VALTRNG 111 (269)
T ss_pred CCEEEEec---c----hHHHHHHHHHHHhCCCCEEEeccchHHH-HHhccCC
Confidence 344433 3 1 1123334445443 5655 567999864 3445555
No 127
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=25.40 E-value=91 Score=26.41 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRR 344 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k 344 (368)
.+.++++.|.++.+|+..+.++|.+-|
T Consensus 48 vI~~hidaGIs~~~AVN~LVeKY~LvR 74 (114)
T PF06755_consen 48 VIQEHIDAGISPADAVNFLVEKYELVR 74 (114)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhh
Confidence 466788899999999999999987644
No 128
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=7.1e+02 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=21.5
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEE-EEcCC
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVI-LSEDT 115 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI-~~edt 115 (368)
.++++| |=++ .-+.+|+++|++||+| +++..
T Consensus 168 ~V~~~~--~~~~-~a~~eaveAI~~AD~IviGPgS 199 (323)
T COG0391 168 RVRLEG--PEKP-SAAPEAVEAIKEADLIVIGPGS 199 (323)
T ss_pred EEEEec--CCCC-CCCHHHHHHHHhCCEEEEcCCc
Confidence 477776 2233 4678999999999955 55543
No 129
>PLN02537 diaminopimelate decarboxylase
Probab=24.84 E-value=7.3e+02 Score=25.03 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=71.9
Q ss_pred HHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhC-CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHH
Q 017645 119 GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (368)
Q Consensus 119 ~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~-Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA 197 (368)
..|.+.+. ..|++-|+...-.+..+.+.+.+.+ +.++.+.. =-+| ...+++.+.+.|..++++-. .-+..|
T Consensus 9 ~~l~~~~~-~tP~~v~d~~~l~~N~~~~~~~~~~~~~~i~yav-KaN~-----~~~il~~l~~~G~~~~~~S~-~E~~~a 80 (410)
T PLN02537 9 QDIMESVE-KRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAI-KANN-----NLKILEHLRELGCGAVLVSG-NELRLA 80 (410)
T ss_pred HHHHHhcC-CCCeEEEeHHHHHHHHHHHHHHhccCCceEEEEe-hhcC-----CHHHHHHHHHcCCCEEEeCH-HHHHHH
Confidence 45555542 3677777655556666777776653 33465553 3344 56788888899988887743 333333
Q ss_pred HHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHH
Q 017645 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250 (368)
Q Consensus 198 ~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~ 250 (368)
+ ..|++...+.|.| |.+. .+.++...+.+- .+...+...+..+.+.
T Consensus 81 l-~~G~~~~~ii~~g--~~k~---~~~l~~a~~~gv-~i~ids~~el~~l~~~ 126 (410)
T PLN02537 81 L-RAGFDPTRCIFNG--NGKL---LEDLVLAAQEGV-FVNVDSEFDLENIVEA 126 (410)
T ss_pred H-HcCCCcceEEEEC--CCCC---HHHHHHHHHCCC-EEEECCHHHHHHHHHH
Confidence 3 7899988877764 4444 244555555554 4667777777665443
No 130
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=24.83 E-value=5.2e+02 Score=24.31 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHhhCCEEEEcCCCCcHHHHh-----hcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHH
Q 017645 99 RALRVLKSANVILSEDTRHSGKLLQ-----YYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (368)
Q Consensus 99 rAl~~L~~aDvI~~edtR~~~~LL~-----~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~ 173 (368)
++.+.|.+++-|++...+.+..+.. ......+.+.+. +..........+..+.-|.++|..|. ......
T Consensus 120 ~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~~~D~vI~iS~sG~---t~~~~~ 193 (284)
T PRK11302 120 RAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFD---DIVMQRMSCMNSSDGDVVVLISHTGR---TKSLVE 193 (284)
T ss_pred HHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCceEecC---CHHHHHHHHHhCCCCCEEEEEeCCCC---CHHHHH
Q ss_pred HHHHhhhCCCCEEEEcCccHHHHHHH
Q 017645 174 LAKLCVDEKIPVVPIPGASAFVAALS 199 (368)
Q Consensus 174 Lv~~~~~~gi~V~vIPGiSA~~aA~a 199 (368)
.++.+++.|.+|..|-+..+-.+..+
T Consensus 194 ~~~~ak~~g~~vI~IT~~~s~l~~~a 219 (284)
T PRK11302 194 LAQLARENGATVIAITSAGSPLAREA 219 (284)
T ss_pred HHHHHHHcCCeEEEECCCCChhHHhC
No 131
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=24.58 E-value=3.6e+02 Score=26.48 Aligned_cols=108 Identities=21% Similarity=0.158 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhH
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRT 222 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~ 222 (368)
...+....++|++.-++..-+-|... |..+.+.+.+.||++..||=. ++.+.... -++.++|- +.
T Consensus 129 ~~~l~~a~~~~~~f~V~v~EsrP~~~--G~~~a~~L~~~gI~vtlI~Ds-a~~~~m~~-----vd~VivGa---d~---- 193 (301)
T TIGR00511 129 LSVIKTAFEQGKDIEVIATETRPRKQ--GHITAKELRDYGIPVTLIVDS-AVRYFMKE-----VDHVVVGA---DA---- 193 (301)
T ss_pred HHHHHHHHHcCCcEEEEEecCCCcch--HHHHHHHHHHCCCCEEEEehh-HHHHHHHh-----CCEEEECc---cE----
Confidence 34455555677765433356899764 588899999999999999874 34444332 35666642 11
Q ss_pred HHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEe
Q 017645 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRG 277 (368)
Q Consensus 223 ~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~g 277 (368)
+...+. ++ -..... .+..+.+.+ +.|++++-+..|.+.....+
T Consensus 194 -----v~~nG~-v~-nkiGT~---~lA~~Ak~~--~vPv~V~a~~~K~~~~~~~~ 236 (301)
T TIGR00511 194 -----ITANGA-LI-NKIGTS---QLALAAREA--RVPFMVAAETYKFHPKTITG 236 (301)
T ss_pred -----EecCCC-EE-EHHhHH---HHHHHHHHh--CCCEEEEcccceecCCCCCC
Confidence 112122 11 111111 122233334 47888888888777655433
No 132
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.51 E-value=3.5e+02 Score=26.62 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchh
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~ 220 (368)
.....+....++|++.-++..-+.|... |..+.+.+.+.|+++.+||=.+ +.+.... -++.++|- +.
T Consensus 132 tv~~~l~~A~~~~k~~~V~v~EsrP~~~--G~~~a~~L~~~GI~vtlI~Dsa-v~~~m~~-----vd~VivGA---d~-- 198 (310)
T PRK08535 132 AALSVIKTAHEQGKDIEVIATETRPRNQ--GHITAKELAEYGIPVTLIVDSA-VRYFMKD-----VDKVVVGA---DA-- 198 (310)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCchhh--HHHHHHHHHHCCCCEEEEehhH-HHHHHHh-----CCEEEECc---cE--
Confidence 3344455555677765433356899765 5888899999999999999844 4444332 35667642 11
Q ss_pred hHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEE
Q 017645 221 RTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWR 276 (368)
Q Consensus 221 ~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~ 276 (368)
+...+. ++ -..... .+..+.+.+ +.|++++-+..|.+.....
T Consensus 199 -------v~~nG~-v~-nkiGT~---~~A~~Ak~~--~vPv~V~a~~~K~~~~~~~ 240 (310)
T PRK08535 199 -------ITANGA-VI-NKIGTS---QIALAAHEA--RVPFMVAAETYKFSPKTLL 240 (310)
T ss_pred -------EecCCC-EE-eHHhHH---HHHHHHHHh--CCCEEEecccceecCCCCC
Confidence 111122 11 111111 222233334 4788888888887766543
No 133
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=24.46 E-value=3.4e+02 Score=21.07 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=43.5
Q ss_pred HHHhh-CCEEEEcCCCCcHHHHhhcCCCC-cEEEcCCCcHH--HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHH
Q 017645 102 RVLKS-ANVILSEDTRHSGKLLQYYNIKT-PLLSYHKFNES--QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKL 177 (368)
Q Consensus 102 ~~L~~-aDvI~~edtR~~~~LL~~~~i~~-~~is~~~~ne~--~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~ 177 (368)
+.+++ .++++- |.|.....-. -.+.. --+++.+.... ...+.....+..++.|++++..|. ......+.
T Consensus 8 ~~l~~~~~~~li-DvR~~~e~~~-ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-----rs~~aa~~ 80 (100)
T cd01523 8 ARLLAGQPLFIL-DVRNESDYER-WKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEG-----SSQFVAEL 80 (100)
T ss_pred HHHHcCCCcEEE-EeCCHHHHhh-cccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCC-----cHHHHHHH
Confidence 34544 467776 8887644322 11221 12232221111 001233445566788999887663 34566677
Q ss_pred hhhCCCCEEEEcC
Q 017645 178 CVDEKIPVVPIPG 190 (368)
Q Consensus 178 ~~~~gi~V~vIPG 190 (368)
+.+.|+++..+.|
T Consensus 81 L~~~G~~~~~l~G 93 (100)
T cd01523 81 LAERGYDVDYLAG 93 (100)
T ss_pred HHHcCceeEEeCC
Confidence 7788888666665
No 134
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.35 E-value=3.3e+02 Score=26.20 Aligned_cols=88 Identities=24% Similarity=0.219 Sum_probs=50.1
Q ss_pred HHHHHHHhhCCEEEEcCCCCcHHHHhh----c-CCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHH
Q 017645 98 LRALRVLKSANVILSEDTRHSGKLLQY----Y-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGT 172 (368)
Q Consensus 98 lrAl~~L~~aDvI~~edtR~~~~LL~~----~-~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~ 172 (368)
.+|.+.|.+|+-|++..-+.+..+-.. + .+..+...+++... . . ..+..+..|.-|..+|..|.. .-..
T Consensus 121 ~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~-~-~-~~~~~~~~~Dv~i~iS~sG~t---~e~i 194 (281)
T COG1737 121 ERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHG-Q-L-MQLALLTPGDVVIAISFSGYT---REIV 194 (281)
T ss_pred HHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHH-H-H-HHHHhCCCCCEEEEEeCCCCc---HHHH
Confidence 477888999996666655554333221 1 24455555543221 1 2 244555665555566644432 2234
Q ss_pred HHHHHhhhCCCCEEEEcCc
Q 017645 173 ELAKLCVDEKIPVVPIPGA 191 (368)
Q Consensus 173 ~Lv~~~~~~gi~V~vIPGi 191 (368)
+.++.+++.|.++..|-..
T Consensus 195 ~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 195 EAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHHHHHCCCcEEEEcCC
Confidence 5667778889999887666
No 135
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=24.32 E-value=1.8e+02 Score=19.75 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=21.4
Q ss_pred HHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 322 LISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 322 l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
+...|++.++++ +.+|++.+.+|+..-..
T Consensus 11 ~~~~~~s~~eia----~~l~~s~~tv~~~~~~~ 39 (57)
T cd06170 11 LLAEGKTNKEIA----DILGISEKTVKTHLRNI 39 (57)
T ss_pred HHHcCCCHHHHH----HHHCCCHHHHHHHHHHH
Confidence 345788877665 55699999999886544
No 136
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=24.23 E-value=2.3e+02 Score=28.43 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=52.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHh-hCCEEEEcCCCC--cHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEE
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRH--SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~-~aDvI~~edtR~--~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (368)
-++-|||+|.|. .=.+|+..+. .++++..-|... .+++-+.|++. .|.+ .++++ +..+++
T Consensus 4 ~rVgViG~~~G~---~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~----~y~~------~eell----~d~Di~ 66 (343)
T TIGR01761 4 QSVVVCGTRFGQ---FYLAAFAAAPERFELAGILAQGSERSRALAHRLGVP----LYCE------VEELP----DDIDIA 66 (343)
T ss_pred cEEEEEeHHHHH---HHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCC----ccCC------HHHHh----cCCCEE
Confidence 468899998763 4557777776 688888766432 23455667653 1221 22222 234555
Q ss_pred EEccCCCCCCCCcHHHHHHHhhhCCCCEEE
Q 017645 158 LISDAGTPGISDPGTELAKLCVDEKIPVVP 187 (368)
Q Consensus 158 lvSdaGdP~isdpg~~Lv~~~~~~gi~V~v 187 (368)
+| ...++.-.+.+++++.++.++|..|-+
T Consensus 67 ~V-~ipt~~P~~~H~e~a~~aL~aGkHVL~ 95 (343)
T TIGR01761 67 CV-VVRSAIVGGQGSALARALLARGIHVLQ 95 (343)
T ss_pred EE-EeCCCCCCccHHHHHHHHHhCCCeEEE
Confidence 55 234444445667788888888776643
No 137
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=23.67 E-value=1.7e+02 Score=29.12 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=47.5
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEc-
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS- 160 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvS- 160 (368)
.+++.|. +.---|..++++|++||+|+-... . ++-.. -|.+. .+.|.+.+ ....|+.||
T Consensus 164 ~v~~~~~---~~a~a~p~vl~AI~~AD~IiiGPg-n---p~TSI---~P~L~---------v~gi~eAL-~~a~vV~Vsp 223 (303)
T PRK13606 164 DVVFVGA---EKAKPAPGVLEAIEEADAVIIGPS-N---PVTSI---GPILA---------VPGIREAL-TEAPVVAVSP 223 (303)
T ss_pred EEEEeCc---ccCCCCHHHHHHHHhCCEEEECCC-c---cHHhh---chhcc---------chhHHHHH-hCCCEEEEcC
Confidence 3555443 224578999999999999887532 1 11111 12121 24455556 456777776
Q ss_pred cCCCCCCCCcHHHHHHHhhhCCCCE
Q 017645 161 DAGTPGISDPGTELAKLCVDEKIPV 185 (368)
Q Consensus 161 daGdP~isdpg~~Lv~~~~~~gi~V 185 (368)
-.|+=-+++|...+..+. |+++
T Consensus 224 ~Ig~~~v~GPA~~lm~a~---g~e~ 245 (303)
T PRK13606 224 IIGGAPVSGPAAKLMAAI---GVEV 245 (303)
T ss_pred CCCCCcCCChhHHHHHHc---CCcc
Confidence 345557888888876654 5544
No 138
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=23.67 E-value=1.3e+02 Score=20.86 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 017645 332 AVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 332 a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
..+.+|+.+|+|++.+-..+++.
T Consensus 16 ~L~~ls~~t~i~~S~Ll~eAle~ 38 (44)
T PF12651_consen 16 KLKELSEETGIPKSKLLREALED 38 (44)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567899999999999888764
No 139
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=23.45 E-value=2.2e+02 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCCc
Q 017645 320 RGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQ 358 (368)
Q Consensus 320 ~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~~ 358 (368)
......|+|.++|| +.+|++++.+|+++-....+.
T Consensus 15 ~~~~~~G~S~re~A----k~~gvs~sTvy~wv~r~~e~G 49 (138)
T COG3415 15 DAVVGEGLSCREAA----KRFGVSISTVYRWVRRYRETG 49 (138)
T ss_pred HHHHHcCccHHHHH----HHhCccHHHHHHHHHHhcccc
Confidence 34446799988776 556999999999976655433
No 140
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=23.33 E-value=93 Score=20.44 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=15.8
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 017645 334 KLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 334 k~~a~~~~~~k~~vY~~~~~ 353 (368)
..+|+.+|++++.+|++.-+
T Consensus 4 ~e~a~~lgvs~~tl~~~~~~ 23 (49)
T cd04762 4 KEAAELLGVSPSTLRRWVKE 23 (49)
T ss_pred HHHHHHHCcCHHHHHHHHHc
Confidence 45677789999999988643
No 141
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=23.21 E-value=1e+03 Score=26.20 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCC-CCCc---HHHHHHHhhh-CCCCEEEEcCccHHHHHHHhcCCCCCcEEEE---
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPG-ISDP---GTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV--- 211 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~-isdp---g~~Lv~~~~~-~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv--- 211 (368)
....+.|...+.+|-+|+++|--|-|. =.++ -..+++.+.+ .|.+|..+|....-.+--+...+...++..+
T Consensus 39 ~~~lpTI~~l~~~gakvvl~SH~gRP~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~GeilLLEN~ 118 (645)
T PRK13962 39 RAALPTIKYLLDHGAKVILVSHLGRPKGEFDPKFSMAPVAKRLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENV 118 (645)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCcCccCCHHHHHHHHHHHHCCCeEECCCCCCHHHHHHHhcCCCCcEEEEecc
Confidence 344567777788899999999889993 1221 2233334433 3778988887755445555556666555443
Q ss_pred EecCCCchhhHHHHHhhhcCCceEEE--ecCcccHHH
Q 017645 212 GFLPKHARSRTERLMLSANEVKTQIF--YVPPHKLLQ 246 (368)
Q Consensus 212 Gflp~~~~~~~~~L~~l~~~~~tlVl--yesp~rl~~ 246 (368)
-|.+.........-+.++...+..|- |...||...
T Consensus 119 Rf~~~E~~~d~~~~~~LA~l~DvyVNDAFg~aHR~ha 155 (645)
T PRK13962 119 RFHKEETKNDPEFAKELASLADIYVNDAFGTAHRAHA 155 (645)
T ss_pred CcCcccccCHHHHHHHHHHhCCEEEechhhhhhhccc
Confidence 23333322222334445555554442 444666543
No 142
>PF14420 Clr5: Clr5 domain
Probab=23.06 E-value=1.9e+02 Score=20.85 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=24.9
Q ss_pred hHHHHHHHHHH-HHCCCCHHHHHHHHHHHcCCCH
Q 017645 312 EDQLEKELRGL-ISAGHNLSMAVKLVAQGTSVRR 344 (368)
Q Consensus 312 ~~~~~~~~~~l-~~~~~~~k~a~k~~a~~~~~~k 344 (368)
|+.....|..| +.+++++++.++.+.+.+|+..
T Consensus 5 We~~K~~I~~LY~~e~~tl~~v~~~M~~~~~F~a 38 (54)
T PF14420_consen 5 WEPHKEEIERLYIDENKTLEEVMEIMKEEHGFKA 38 (54)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHhCCCc
Confidence 44455555544 5789999999999999999843
No 143
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=23.01 E-value=3.3e+02 Score=27.27 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHhhCCEEEE--cCCCCcHHHHhhcCCCCcEEE-cCCCc-HHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHh
Q 017645 103 VLKSANVILS--EDTRHSGKLLQYYNIKTPLLS-YHKFN-ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC 178 (368)
Q Consensus 103 ~L~~aDvI~~--edtR~~~~LL~~~~i~~~~is-~~~~n-e~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~ 178 (368)
.+.++|+|+. +..-+.......+.-.+.++. +.-|. ..+..+.+.+..+++..|++++..=||++++.-..+-+.+
T Consensus 57 ~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~ 136 (324)
T TIGR01921 57 HLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAV 136 (324)
T ss_pred hccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhcc
Confidence 3467888755 211222222222222233332 22121 2344555666666566788886344788776555555555
Q ss_pred hhCCCCEEEE-cCccHH
Q 017645 179 VDEKIPVVPI-PGASAF 194 (368)
Q Consensus 179 ~~~gi~V~vI-PGiSA~ 194 (368)
.-.|..+... ||+|--
T Consensus 137 lp~g~~yt~wG~g~s~g 153 (324)
T TIGR01921 137 LPKGQTYTFWGPGLSQG 153 (324)
T ss_pred CCCCcceeccCCCcCch
Confidence 4456666544 666653
No 144
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.92 E-value=3e+02 Score=22.78 Aligned_cols=55 Identities=27% Similarity=0.369 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEccC--CCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHh
Q 017645 140 SQREQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSda--GdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~ 200 (368)
.++.+++++.+.+++.|.+++|- |+|+-. ...+ .....++.+|.|++....--+.
T Consensus 44 ~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~--~~~~----~~~~~~~~visG~nlpmlle~~ 100 (122)
T cd00006 44 LEKIKAALAELDSGEGVLILTDLFGGSPNNA--AARL----SMEHPPVEVIAGVNLPMLLEAA 100 (122)
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCCCCHHHH--HHHH----HhcCCCEEEEEccCHHHHHHHH
Confidence 34455666666667778878798 888431 1222 2222578899999876644333
No 145
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=22.50 E-value=1.3e+02 Score=21.46 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 319 LRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 319 ~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
+-.++..|++.+++++.+ |++.+.||...-.+
T Consensus 11 vl~~l~~G~~~~eIA~~l----~is~~tV~~~~~~i 42 (58)
T PF00196_consen 11 VLRLLAQGMSNKEIAEEL----GISEKTVKSHRRRI 42 (58)
T ss_dssp HHHHHHTTS-HHHHHHHH----TSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHhc----CcchhhHHHHHHHH
Confidence 445666899998877655 99999998776544
No 146
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=22.40 E-value=1.6e+02 Score=26.61 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 317 KELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 317 ~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
+.+..+...|++.+++|+.+ |+++..+|+..
T Consensus 163 ~~i~~~~~~g~s~~~iak~l----gis~~Tv~r~~ 193 (200)
T PRK13413 163 EKIKKLLDKGTSKSEIARKL----GVSRTTLARFL 193 (200)
T ss_pred HHHHHHHHCCCCHHHHHHHH----CCCHHHHHHHH
Confidence 34556777899888877655 99999999875
No 147
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=22.39 E-value=7.8e+02 Score=25.19 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhh
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV 179 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~ 179 (368)
.+..+.+.+..+.|..|.++. +|+ +.+.+..+.+.+.
T Consensus 421 ~~a~~~a~~~a~~gD~vlv~G-~g~--~~~~~~~~~~~l~ 457 (461)
T PRK00421 421 EDLAELLAEVLKPGDLVLTMG-AGD--ITKLARALLELLL 457 (461)
T ss_pred HHHHHHHHHhcCCCCEEEEEC-CCC--HHHHHHHHHHHHh
Confidence 444455555555554444442 555 5555566666554
No 148
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=22.22 E-value=7.5e+02 Score=24.75 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=31.6
Q ss_pred hHHHHHHHhhCCEEEEcCCCCcHHHHhhc--CCCCcEEEc---CCCcHHHHHH--HHHHHH----hCCCeEEEEccCCCC
Q 017645 97 TLRALRVLKSANVILSEDTRHSGKLLQYY--NIKTPLLSY---HKFNESQREQ--TVLNRL----KQGEIVALISDAGTP 165 (368)
Q Consensus 97 TlrAl~~L~~aDvI~~edtR~~~~LL~~~--~i~~~~is~---~~~ne~~~~~--~Ii~~l----~~Gk~ValvSdaGdP 165 (368)
|.|.+... +|+|+.- +.... .+..+ ....|+|.. +.|.-+..++ .|.+.. -+|.+|+++ ||.
T Consensus 93 tarvls~y--~D~iviR-~~~~~-~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~v---GD~ 165 (334)
T PRK12562 93 TARVLGRM--YDGIQYR-GHGQE-VVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYA---GDA 165 (334)
T ss_pred HHHHHHHh--CCEEEEE-CCchH-HHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEE---CCC
Confidence 34444444 9999993 32222 22222 134677642 3454343333 233443 246788888 776
Q ss_pred C
Q 017645 166 G 166 (368)
Q Consensus 166 ~ 166 (368)
.
T Consensus 166 ~ 166 (334)
T PRK12562 166 R 166 (334)
T ss_pred C
Confidence 3
No 149
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=22.06 E-value=2.9e+02 Score=24.40 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=26.8
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCcc
Q 017645 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiS 192 (368)
.+.++ .|+|++......+++.+++.|+.+.+....+
T Consensus 65 ~i~~s-GGEPll~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 65 GVVIT-GGEPTLQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred eEEEE-CCcccCcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 34554 6999998767788999988888776665443
No 150
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=22.01 E-value=2.3e+02 Score=27.00 Aligned_cols=72 Identities=28% Similarity=0.328 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCc--HHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCC-CCCcEEEEEecC
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDP--GTELAKLCVDEKIPVVPIPGASAFVAALSASGL-ATDEFTFVGFLP 215 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdp--g~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGl-p~~~f~fvGflp 215 (368)
...+.....++.|++|+..| .|. +.|. +..|.+.+++.|..+.+-||.-...-++...-+ .+..+.+.++-|
T Consensus 73 ~~~e~~~~aL~aGk~Vvi~s-~~A--l~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~~~~~g~~~~v~~~~~k~ 147 (265)
T PRK13303 73 ALKEHVVPILKAGIDCAVIS-VGA--LADEALRERLEQAAEAGGARLHLLSGAIGGIDALAAAKEGGLDEVTYTGRKP 147 (265)
T ss_pred HHHHHHHHHHHcCCCEEEeC-hHH--hcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHHHHHhCCceEEEEEEecC
Confidence 33567778888999999875 231 3344 567888888999988887776554444333221 234555555433
No 151
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=21.99 E-value=1.4e+02 Score=23.86 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLAL 352 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~~ 352 (368)
|..++.++.+|+.+|++++++...+-
T Consensus 2 mtk~eli~~ia~~~~~s~~~v~~vv~ 27 (96)
T TIGR00987 2 LTKAEMSEYLFDELGLSKREAKELVE 27 (96)
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 67789999999999999998876653
No 152
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=21.97 E-value=1e+02 Score=22.42 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCCHHHHH
Q 017645 329 LSMAVKLVAQGTSVRRKTIY 348 (368)
Q Consensus 329 ~k~a~k~~a~~~~~~k~~vY 348 (368)
+.++.+.||+.||++..++.
T Consensus 2 ~~~I~~~Va~~~~i~~~~i~ 21 (60)
T smart00760 2 IEEIIEAVAEYFGVKPEDLK 21 (60)
T ss_pred HHHHHHHHHHHhCCCHHHHh
Confidence 56788899999999988875
No 153
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=21.89 E-value=93 Score=24.16 Aligned_cols=21 Identities=43% Similarity=0.425 Sum_probs=16.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 017645 333 VKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 333 ~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.+.+++.+|++|..+|+++-+
T Consensus 16 l~ev~~~~GlSrstiYr~i~~ 36 (70)
T COG3311 16 LPEVAQLTGLSRSTIYRLIKD 36 (70)
T ss_pred HHHHHHHHCccHHHHHHHHcc
Confidence 356778889999999998643
No 154
>PHA02591 hypothetical protein; Provisional
Probab=21.76 E-value=2.6e+02 Score=22.36 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 313 DQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 313 ~~~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
++.....++|.+.|++..++|..+ |++...|=+.+
T Consensus 46 dd~~~vA~eL~eqGlSqeqIA~~L----GVsqetVrKYL 80 (83)
T PHA02591 46 DDLISVTHELARKGFTVEKIASLL----GVSVRKVRRYL 80 (83)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHh----CCCHHHHHHHH
Confidence 345566788999999998766554 99888876553
No 155
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=21.58 E-value=1.5e+02 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 329 LSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 329 ~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.++.++.+|+.+|++++++...+-.
T Consensus 2 K~~l~~~ia~~~~~~~~~v~~vl~~ 26 (87)
T cd00591 2 KSELIEAIAEKTGLSKKDAEAAVDA 26 (87)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 5788899999999999998876543
No 156
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=21.45 E-value=2.5e+02 Score=28.13 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=52.6
Q ss_pred ecCCCCccchhHHHHHHHhhC--------CEEEEcCCCCcHHHHhhcCCCCcEEEcC-CCcH---HHHHHHHHHHHhCCC
Q 017645 87 ATPIGNLEDITLRALRVLKSA--------NVILSEDTRHSGKLLQYYNIKTPLLSYH-KFNE---SQREQTVLNRLKQGE 154 (368)
Q Consensus 87 GtGpGn~~dITlrAl~~L~~a--------DvI~~edtR~~~~LL~~~~i~~~~is~~-~~ne---~~~~~~Ii~~l~~Gk 154 (368)
|+.--|++.+..||++.|++. |+-+||-|-| -|.|+-.. + -.|+ +...+.-+.+++.|-
T Consensus 91 gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~h-----GHcGil~~----g~i~ND~Tl~~L~~~Als~A~AGA 161 (322)
T PRK13384 91 GSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDH-----GHCGVLHN----DEVDNDATVENLVKQSVTAAKAGA 161 (322)
T ss_pred cccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCC-----CceeeccC----CcCccHHHHHHHHHHHHHHHHcCC
Confidence 334447888999999999984 5555654433 22332111 1 1233 233455667778898
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCC
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIP 184 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~ 184 (368)
+++=-|| ++-+.-..+-+.+.++|+.
T Consensus 162 DiVAPSd----MMDGrV~aIR~aLd~~g~~ 187 (322)
T PRK13384 162 DMLAPSA----MMDGQVKAIRQGLDAAGFE 187 (322)
T ss_pred CeEeccc----ccccHHHHHHHHHHHCCCC
Confidence 8887775 3446667777788888873
No 157
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.44 E-value=6.2e+02 Score=23.83 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=45.7
Q ss_pred HHHHHHhhCCEEEEcCCCCcHHHHhhc-----CCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHH
Q 017645 99 RALRVLKSANVILSEDTRHSGKLLQYY-----NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (368)
Q Consensus 99 rAl~~L~~aDvI~~edtR~~~~LL~~~-----~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~ 173 (368)
++.+.|.+|+-|+....+.+..+..++ .+.+......+ .......+..+.++.-+.++|-.| -......
T Consensus 120 ~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d---~~~~~~~~~~~~~~Dv~I~iS~sg---~~~~~~~ 193 (278)
T PRK11557 120 ECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERD---MHALLATVQALSPDDLLLAISYSG---ERRELNL 193 (278)
T ss_pred HHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCC---hHHHHHHHHhCCCCCEEEEEcCCC---CCHHHHH
Confidence 455667777777776655443222211 12333333221 111122334455554444444333 3344567
Q ss_pred HHHHhhhCCCCEEEEcCc
Q 017645 174 LAKLCVDEKIPVVPIPGA 191 (368)
Q Consensus 174 Lv~~~~~~gi~V~vIPGi 191 (368)
.++.+++.|.+|..|-+.
T Consensus 194 ~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 194 AADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 788889999999988875
No 158
>COG5352 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.36 E-value=81 Score=27.89 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 316 EKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 316 ~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.+.+++|-.+|+|.+++++.+- |++||.|--+++.+
T Consensus 8 ve~LkKLWseGLSASQIAaQLG---GVsRnAVIGKVHRL 43 (169)
T COG5352 8 VETLKKLWSEGLSASQIAAQLG---GVSRNAVIGKVHRL 43 (169)
T ss_pred HHHHHHHHHcccCHHHHHHHhc---Ccchhhhheeeeec
Confidence 3456777778999998877664 89999998877655
No 159
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=21.21 E-value=1.8e+02 Score=20.59 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=24.1
Q ss_pred cCCCCCCCCcHHHHHHHhhhCCCCEEEEc
Q 017645 161 DAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (368)
Q Consensus 161 daGdP~isdpg~~Lv~~~~~~gi~V~vIP 189 (368)
+.|++.-.+-...+.+.+.+.|+++..+|
T Consensus 7 ~~~m~~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 7 DQLMNGEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred ccccCcccCHHHHHHHHHHHcCCeEEEEe
Confidence 66777766666889999999999999995
No 160
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=21.09 E-value=2.5e+02 Score=27.89 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=43.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH-HHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHh-CCCeEEEE
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG-KLLQYYNIKTPLLSYHKFNESQREQTVLNRLK-QGEIVALI 159 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~-~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~-~Gk~Valv 159 (368)
++.|+|.|| .++++..+.+.+-.+.+|+. |....+ ++.+.+. ....+...... .....+.+.-. .|-++++-
T Consensus 171 ~V~V~GaGp--IGLla~~~a~~~Ga~~Viv~-d~~~~Rl~~A~~~~-g~~~~~~~~~~--~~~~~~~~~t~g~g~D~vie 244 (350)
T COG1063 171 TVVVVGAGP--IGLLAIALAKLLGASVVIVV-DRSPERLELAKEAG-GADVVVNPSED--DAGAEILELTGGRGADVVIE 244 (350)
T ss_pred EEEEECCCH--HHHHHHHHHHHcCCceEEEe-CCCHHHHHHHHHhC-CCeEeecCccc--cHHHHHHHHhCCCCCCEEEE
Confidence 688888876 88999999999988999998 432221 2222211 22333222211 22233333322 25788888
Q ss_pred ccCCCCC
Q 017645 160 SDAGTPG 166 (368)
Q Consensus 160 SdaGdP~ 166 (368)
+ .|.|.
T Consensus 245 ~-~G~~~ 250 (350)
T COG1063 245 A-VGSPP 250 (350)
T ss_pred C-CCCHH
Confidence 4 77443
No 161
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.01 E-value=2.3e+02 Score=25.04 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEE-cCccHHHHHHHhcCCCCCcEEEEEecCCCchhhH
Q 017645 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI-PGASAFVAALSASGLATDEFTFVGFLPKHARSRT 222 (368)
Q Consensus 144 ~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vI-PGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~ 222 (368)
+.|.+.|++.|++|+|--+.+|-= +.+++.+.+.+.|++|.++ |+... =- +.|+ +. .
T Consensus 7 ~~i~~iL~~~K~IAvVG~S~~P~r--~sy~V~kyL~~~GY~ViPVNP~~~~----~e----------iLG~---k~---y 64 (140)
T COG1832 7 EDIAEILKSAKTIAVVGASDKPDR--PSYRVAKYLQQKGYRVIPVNPKLAG----EE----------ILGE---KV---Y 64 (140)
T ss_pred HHHHHHHHhCceEEEEecCCCCCc--cHHHHHHHHHHCCCEEEeeCcccch----HH----------hcCc---hh---h
Confidence 345566677899999944445543 5688999999999877655 22211 11 1221 10 1
Q ss_pred HHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccE
Q 017645 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEE 273 (368)
Q Consensus 223 ~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~ 273 (368)
..|..+-..-+.+-+|-.|..+.+++++..+. + .+++.. .+|-.+|+
T Consensus 65 ~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~~-~--~kv~W~-QlGi~n~e 111 (140)
T COG1832 65 PSLADIPEPIDIVDVFRRSEAAPEVAREALEK-G--AKVVWL-QLGIRNEE 111 (140)
T ss_pred hcHHhCCCCCcEEEEecChhhhHHHHHHHHhh-C--CCeEEE-ecCcCCHH
Confidence 22334444456777888888888888776652 2 455443 35545444
No 162
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=20.99 E-value=1.2e+02 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCcc
Q 017645 332 AVKLVAQGTSVRRKTIYSLALRKFGKQI 359 (368)
Q Consensus 332 a~k~~a~~~~~~k~~vY~~~~~~~~~~~ 359 (368)
..+.+|+.+|+++..+.+.+..+.++++
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~ 49 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGL 49 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 4667899999999999999877766544
No 163
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.98 E-value=4.4e+02 Score=21.12 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHH
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~ 195 (368)
.+++.+.+.+-++|.+.. .|. -...+.++...+...|..+..+++.....
T Consensus 3 i~~~~~~i~~~~~i~i~g-~g~--s~~~a~~~~~~l~~~~~~~~~~~~~~~~~ 52 (139)
T cd05013 3 LEKAVDLLAKARRIYIFG-VGS--SGLVAEYLAYKLLRLGKPVVLLSDPHLQL 52 (139)
T ss_pred HHHHHHHHHhCCEEEEEE-cCc--hHHHHHHHHHHHHHcCCceEEecCHHHHH
Confidence 456677777777887773 554 33456777777777788888887765443
No 164
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.94 E-value=3.3e+02 Score=22.43 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=21.3
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEE
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vI 188 (368)
.+.++|| |.|.-..--..+++.+++.|+++.+|
T Consensus 106 ~iiliTD-G~~~~~~~~~~~~~~~~~~~v~v~~i 138 (161)
T cd01450 106 VIIVLTD-GRSDDGGDPKEAAAKLKDEGIKVFVV 138 (161)
T ss_pred EEEEECC-CCCCCCcchHHHHHHHHHCCCEEEEE
Confidence 4677764 77755433466777787777766555
No 165
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=20.92 E-value=3.1e+02 Score=22.09 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCCcc
Q 017645 317 KELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGKQI 359 (368)
Q Consensus 317 ~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~~~ 359 (368)
.++...++.|.+.+++ |+.||+++.-+|+++-....+..
T Consensus 16 ~lv~~vv~~g~~~a~a----A~~~gVS~~Ta~kW~~Ryra~G~ 54 (85)
T PF13011_consen 16 RLVRRVVEQGWPVAHA----AAEFGVSRRTAYKWLARYRAEGE 54 (85)
T ss_pred HHHHHHHHcCCcHHHH----HHHhCCCHHHHHHHHHHHHHcCc
Confidence 3556677889988765 56789999999999766655433
No 166
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=20.90 E-value=3.7e+02 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=38.0
Q ss_pred EEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEE-cCcc
Q 017645 131 LLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI-PGAS 192 (368)
Q Consensus 131 ~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vI-PGiS 192 (368)
++.|.+.-... .++..+.+.+ .++.++ -|+++.-.|...+++.+.+.|.++.+| ++++
T Consensus 147 Vv~fgE~~p~~-~~~a~~~~~~-~Dl~lv--lGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~ 205 (218)
T cd01407 147 VVFFGESLPEE-LDEAAEALAK-ADLLLV--IGTSLQVYPAAGLPLYAPERGAPVVIINLEPT 205 (218)
T ss_pred eEECCCCCcHH-HHHHHHHHhc-CCEEEE--eCCCcccccHHHHHHHHHHCCCeEEEECCCCC
Confidence 34455433333 6666666665 456555 699999999999999998777665544 4443
No 167
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.89 E-value=2.5e+02 Score=23.47 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 017645 316 EKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKF 355 (368)
Q Consensus 316 ~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~ 355 (368)
.+.+...++.|.+..++ |+.+|++.+.+|++.-...
T Consensus 19 ~~aV~~~~~~g~sv~ev----A~e~gIs~~tl~~W~r~y~ 54 (121)
T PRK09413 19 IAIVQQSFEPGMTVSLV----ARQHGVAASQLFLWRKQYQ 54 (121)
T ss_pred HHHHHHHHcCCCCHHHH----HHHHCcCHHHHHHHHHHHh
Confidence 34555667778887765 5668999999999976643
No 168
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=20.82 E-value=1.4e+02 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
|..+|.++.+|+.+|++++++-..+
T Consensus 1 MtK~eli~~ia~~~~~s~~~~~~~v 25 (90)
T PRK10664 1 MNKSQLIDKIAAGADISKAAAGRAL 25 (90)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567888888999999988876553
No 169
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.76 E-value=8.2e+02 Score=26.21 Aligned_cols=91 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCc--------------
Q 017645 105 KSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDP-------------- 170 (368)
Q Consensus 105 ~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdp-------------- 170 (368)
..+|+|++ .--+..+++. ..+.|++..+ .+-.+....+...-.-+.++++| |.|.+...
T Consensus 63 ~~~dviIs--rG~ta~~i~~-~~~iPVv~i~-~s~~Dil~al~~a~~~~~~iavv---~~~~~~~~~~~~~~~l~~~i~~ 135 (538)
T PRK15424 63 ERCDAIIA--AGSNGAYLKS-RLSVPVILIK-PSGFDVMQALARARKLTSSIGVV---TYQETIPALVAFQKTFNLRIEQ 135 (538)
T ss_pred CCCcEEEE--CchHHHHHHh-hCCCCEEEec-CCHhHHHHHHHHHHhcCCcEEEE---ecCcccHHHHHHHHHhCCceEE
Q ss_pred --------HHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCC
Q 017645 171 --------GTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (368)
Q Consensus 171 --------g~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp 204 (368)
....++.+++.|+++.+ |.....-.+...|++
T Consensus 136 ~~~~~~~e~~~~v~~lk~~G~~~vv--G~~~~~~~A~~~g~~ 175 (538)
T PRK15424 136 RSYVTEEDARGQINELKANGIEAVV--GAGLITDLAEEAGMT 175 (538)
T ss_pred EEecCHHHHHHHHHHHHHCCCCEEE--cCchHHHHHHHhCCc
No 170
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=20.67 E-value=2e+02 Score=21.35 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 017645 316 EKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKF 355 (368)
Q Consensus 316 ~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~ 355 (368)
...+...+..|.+.+ .+|+.+|++.+.+|++.-...
T Consensus 13 ~~~v~~~~~~g~sv~----~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 13 LQAVREYLESGESVS----EVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp HHHHHHHHHHHCHHH----HHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceE----eeecccccccccccHHHHHHh
Confidence 344555555565554 566777999999999976654
No 171
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=20.66 E-value=2.3e+02 Score=24.64 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHH
Q 017645 313 DQLEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIY 348 (368)
Q Consensus 313 ~~~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY 348 (368)
+...+.+++|..+|.+.++++..+++++.++..-+-
T Consensus 91 ~~vi~~I~el~~eG~s~eei~~ki~~e~kl~pd~i~ 126 (131)
T PF08004_consen 91 ESVIERIKELKSEGKSEEEIAEKISRETKLSPDMIK 126 (131)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCHHHHH
Confidence 445677889999999999999999999999876553
No 172
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.65 E-value=7.4e+02 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=14.3
Q ss_pred CCCCEEEEcCccHHHHHHHhcCCCCCcE
Q 017645 181 EKIPVVPIPGASAFVAALSASGLATDEF 208 (368)
Q Consensus 181 ~gi~V~vIPGiSA~~aA~a~sGlp~~~f 208 (368)
..+-++++|-+.++ +|++..++
T Consensus 149 ~r~~~RvLP~~~s~------~g~~~~~i 170 (248)
T PRK08057 149 HRLLVRVLPPPEVL------LGLPRAEI 170 (248)
T ss_pred CEEEEEECCCchhc------CCCChhhE
Confidence 34567778877776 66665554
No 173
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=20.64 E-value=1e+02 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=18.4
Q ss_pred HHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 321 ~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
..++.|.+ ...+|+.||+++..|++.+
T Consensus 17 ~~~e~g~s----~~~ia~~fgv~~sTv~~I~ 43 (53)
T PF04218_consen 17 KRLEEGES----KRDIAREFGVSRSTVSTIL 43 (53)
T ss_dssp HHHHCTT-----HHHHHHHHT--CCHHHHHH
T ss_pred HHHHcCCC----HHHHHHHhCCCHHHHHHHH
Confidence 45567874 4567889999999999874
No 174
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=20.61 E-value=2.8e+02 Score=25.65 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=36.1
Q ss_pred cHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEE
Q 017645 118 SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (368)
Q Consensus 118 ~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vI 188 (368)
|.+.|+.+|+. .++ ...++-+..++.+......|++|.++. |+..- ..|.+.+.+.|++|+.+
T Consensus 85 Ta~~l~~~G~~-~~~-~~~~~~e~L~~~~~~~~~~~~~vL~~r--g~~~r----~~l~~~L~~~G~~v~~~ 147 (240)
T PRK09189 85 TAEAARELGFR-HVI-EGGGDGVRLAETVAAALAPTARLLYLA--GRPRA----PVFEDRLAAAGIPFRVA 147 (240)
T ss_pred HHHHHHHcCCC-CCc-CCCCCHHHHHHHHHHhcCCCCcEEEec--cCccc----chhHHHHHhCCCeeEEE
Confidence 45666667765 222 223444555566655555678888884 65433 34666677777766443
No 175
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=20.52 E-value=4.8e+02 Score=26.89 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCc--------cHHH-HHHHhcCCCCC
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA--------SAFV-AALSASGLATD 206 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGi--------SA~~-aA~a~sGlp~~ 206 (368)
.+++++++|.|.| |-+.+++.|+++-.+|.- |++- .-++..|++..
T Consensus 145 ~~~~v~vTd~~s~--------L~~~a~~~g~~~f~ip~~VGGRfSvlSavGLlP~a~~G~di~ 199 (410)
T PRK03868 145 KKNFLFITDPDSK--------LEQFAKENNIKCFNIPKNVGGRFSVLSAVGIVPLALCGYDIK 199 (410)
T ss_pred ccEEEEEecCCch--------HHHhHHhcCCcEEecCCCCCcceeecchhhHHHHHHhCccHH
Confidence 4567777765543 666777888877776631 4422 33444688874
No 176
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.38 E-value=2.5e+02 Score=22.80 Aligned_cols=11 Identities=0% Similarity=-0.088 Sum_probs=8.5
Q ss_pred CeEEEEecCCC
Q 017645 81 PGLYLVATPIG 91 (368)
Q Consensus 81 g~LyiVGtGpG 91 (368)
+++|++|.|..
T Consensus 1 ~~I~i~G~G~S 11 (128)
T cd05014 1 GKVVVTGVGKS 11 (128)
T ss_pred CeEEEEeCcHh
Confidence 46899999854
No 177
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.21 E-value=1.3e+02 Score=30.11 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcH--HHHHHHhhhCCCCEEEEcCcc
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPG--TELAKLCVDEKIPVVPIPGAS 192 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg--~~Lv~~~~~~gi~V~vIPGiS 192 (368)
.++++..+..+..+++| -+|.|-.+||. .-+.+.+...|+.|-..-.++
T Consensus 190 ~~e~L~~l~~n~~~gVv-LaGrPYh~DpeiNhgI~e~i~~~g~~IlTedsI~ 240 (351)
T COG3580 190 GEEVLKYLKENGEKGVV-LAGRPYHFDPEINHGIPEKINSRGIPILTEDSIP 240 (351)
T ss_pred HHHHHHHHHhcCceeEE-EeCCccccCcccccchHHHHhhcCCeeeecccch
Confidence 45677777655445555 37999999997 457777778888886655554
No 178
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=20.19 E-value=6.1e+02 Score=22.45 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=37.9
Q ss_pred EcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHH
Q 017645 188 IPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250 (368)
Q Consensus 188 IPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~ 250 (368)
=|.+-.+..++...|++.++..|+|-. ...+....+.+-..|.+..+..+.+.|..
T Consensus 152 KP~p~~~~~~~~~~g~~~~~~l~i~D~-------~~di~aA~~aG~~~i~v~~~~~~~~~l~~ 207 (211)
T TIGR02247 152 KPDPRIYQLMLERLGVAPEECVFLDDL-------GSNLKPAAALGITTIKVSDEEQAIHDLEK 207 (211)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEcCC-------HHHHHHHHHcCCEEEEECCHHHHHHHHHH
Confidence 477788999999999998888887532 23455555556666777666555544443
No 179
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=20.07 E-value=5.2e+02 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=18.1
Q ss_pred HHHHHhhhcCCceEEEe--cCcccHHHHHHHHHH
Q 017645 222 TERLMLSANEVKTQIFY--VPPHKLLQFLEETSL 253 (368)
Q Consensus 222 ~~~L~~l~~~~~tlVly--esp~rl~~~l~~L~~ 253 (368)
...|+.++..+. -+|+ .....+..+++.+.+
T Consensus 147 ~~~L~~iA~~~~-~~f~~~~~~~~l~~~~~~~~~ 179 (185)
T cd01474 147 KSQLINIADSKE-YVFPVTSGFQALSGIIESVVK 179 (185)
T ss_pred HHHHHHHhCCCC-eeEecCccHHHHHHHHHHHHH
Confidence 356777777665 3442 234466666666654
Done!