Query 017645
Match_columns 368
No_of_seqs 286 out of 2359
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kwp_A Predicted methyltransfe 100.0 1.4E-62 4.8E-67 475.8 27.3 278 79-356 14-295 (296)
2 1wyz_A Putative S-adenosylmeth 100.0 7.5E-46 2.6E-50 348.5 21.9 222 79-303 1-235 (242)
3 4e16_A Precorrin-4 C(11)-methy 100.0 4.2E-43 1.4E-47 331.8 25.5 224 79-304 3-233 (253)
4 3ndc_A Precorrin-4 C(11)-methy 100.0 1.6E-40 5.5E-45 316.3 23.8 221 81-304 4-231 (264)
5 1cbf_A Cobalt-precorrin-4 tran 100.0 5.7E-40 1.9E-44 315.2 27.7 222 81-304 21-249 (285)
6 2ybo_A Methyltransferase; SUMT 100.0 3.3E-39 1.1E-43 311.6 25.2 221 79-303 23-257 (294)
7 1s4d_A Uroporphyrin-III C-meth 100.0 5.4E-39 1.8E-43 307.9 24.5 221 78-304 12-249 (280)
8 3nut_A Precorrin-3 methylase; 100.0 1.1E-38 3.9E-43 301.0 22.5 216 78-304 6-235 (251)
9 1ve2_A Uroporphyrin-III C-meth 100.0 7.5E-39 2.6E-43 298.7 21.0 210 79-304 1-222 (235)
10 1va0_A Uroporphyrin-III C-meth 100.0 7E-38 2.4E-42 292.8 20.2 210 81-304 1-222 (239)
11 1pjq_A CYSG, siroheme synthase 100.0 3.4E-36 1.2E-40 306.7 24.9 219 78-304 213-445 (457)
12 2e0n_A Precorrin-2 C20-methylt 100.0 3.4E-36 1.2E-40 284.7 20.8 211 79-304 3-236 (259)
13 2zvb_A Precorrin-3 C17-methylt 100.0 6.2E-36 2.1E-40 289.1 20.6 216 81-304 2-247 (295)
14 2qbu_A Precorrin-2 methyltrans 100.0 1.5E-35 5.1E-40 274.9 22.2 206 79-303 1-229 (232)
15 3i4t_A Diphthine synthase; nia 100.0 2.1E-36 7.2E-41 292.0 16.1 216 79-303 19-275 (292)
16 3nd1_A Precorrin-6A synthase/C 100.0 8.1E-37 2.8E-41 292.6 12.5 200 77-287 18-249 (275)
17 2z6r_A Diphthine synthase; met 100.0 1E-34 3.5E-39 275.4 20.2 214 82-303 2-242 (265)
18 1vhv_A Diphthine synthase; str 100.0 2E-34 6.8E-39 274.3 18.7 213 79-302 11-239 (268)
19 2npn_A Putative cobalamin synt 100.0 8.4E-34 2.9E-38 267.3 15.8 194 81-287 3-228 (251)
20 1wde_A Probable diphthine synt 100.0 4.9E-33 1.7E-37 268.3 19.4 211 81-302 8-252 (294)
21 2bb3_A Cobalamin biosynthesis 100.0 9.5E-32 3.2E-36 249.4 10.9 200 76-302 17-216 (221)
22 3ffy_A Putative tetrapyrrole ( 100.0 2.7E-28 9.3E-33 204.9 14.9 113 189-302 1-113 (115)
23 3hh1_A Tetrapyrrole methylase 100.0 1.7E-28 5.6E-33 206.2 12.8 113 79-191 4-117 (117)
24 1tc3_C Protein (TC3 transposas 71.4 11 0.00038 23.9 5.8 31 319-353 14-44 (51)
25 2glo_A Brinker CG9653-PA; prot 70.0 4.5 0.00015 28.3 3.7 33 319-351 14-46 (59)
26 2xvc_A ESCRT-III, SSO0910; cel 66.8 4.1 0.00014 29.4 2.8 27 333-359 28-54 (59)
27 3gx1_A LIN1832 protein; APC633 62.6 5.7 0.0002 32.9 3.5 50 143-197 51-100 (130)
28 3hot_A Transposable element ma 61.7 26 0.00088 32.5 8.4 43 313-355 9-54 (345)
29 4fcy_A Transposase; rnaseh, DD 57.4 14 0.00048 36.9 6.0 36 318-353 40-75 (529)
30 3gdw_A Sigma-54 interaction do 56.1 9.6 0.00033 31.9 3.8 41 152-197 62-102 (139)
31 2q5c_A NTRC family transcripti 53.7 87 0.003 27.2 9.9 66 91-160 36-101 (196)
32 2x48_A CAG38821; archeal virus 51.1 37 0.0013 22.6 5.6 30 318-351 23-52 (55)
33 3mvn_A UDP-N-acetylmuramate:L- 50.3 1E+02 0.0036 25.6 9.6 90 81-178 64-161 (163)
34 2pju_A Propionate catabolism o 50.2 41 0.0014 30.3 7.3 73 81-160 39-113 (225)
35 2lnb_A Z-DNA-binding protein 1 48.4 15 0.00051 28.1 3.3 38 318-357 24-61 (80)
36 2fpr_A Histidine biosynthesis 46.6 64 0.0022 26.9 7.7 97 144-248 48-170 (176)
37 2i6x_A Hydrolase, haloacid deh 46.2 1.2E+02 0.0042 24.8 10.3 96 143-252 94-207 (211)
38 1tq1_A AT5G66040, senescence-a 46.0 34 0.0012 27.3 5.6 104 93-206 17-128 (129)
39 1ccw_A Protein (glutamate muta 44.3 72 0.0025 26.0 7.4 114 82-197 4-127 (137)
40 2cob_A LCOR protein; MLR2, KIA 43.5 56 0.0019 24.3 5.8 42 310-356 14-56 (70)
41 1sfu_A 34L protein; protein/Z- 43.0 27 0.00094 26.3 4.1 50 312-362 10-62 (75)
42 1jko_C HIN recombinase, DNA-in 43.0 30 0.001 22.2 4.0 30 318-351 13-42 (52)
43 3sho_A Transcriptional regulat 41.7 1.5E+02 0.0051 24.6 11.0 54 140-196 26-80 (187)
44 2elh_A CG11849-PA, LD40883P; s 39.6 44 0.0015 24.9 5.0 29 321-353 33-61 (87)
45 2r47_A Uncharacterized protein 39.5 34 0.0012 29.4 4.6 46 143-192 16-61 (157)
46 1oyi_A Double-stranded RNA-bin 39.2 14 0.00048 28.4 2.0 27 331-357 31-57 (82)
47 2o8r_A Polyphosphate kinase; s 38.2 57 0.0019 34.6 7.1 89 100-191 336-433 (705)
48 1byr_A Protein (endonuclease); 37.6 92 0.0032 25.0 7.1 49 140-189 40-88 (155)
49 3tr9_A Dihydropteroate synthas 36.1 1.7E+02 0.0058 27.8 9.4 66 99-167 95-162 (314)
50 3to5_A CHEY homolog; alpha(5)b 34.4 1.3E+02 0.0045 24.2 7.5 81 107-196 13-101 (134)
51 1u78_A TC3 transposase, transp 33.3 74 0.0025 25.0 5.7 32 318-353 14-45 (141)
52 1qbj_A Protein (double-strande 33.2 24 0.00081 26.7 2.4 25 333-357 30-54 (81)
53 2cun_A Phosphoglycerate kinase 33.2 3.4E+02 0.012 26.7 11.3 107 140-247 36-158 (410)
54 2yva_A DNAA initiator-associat 33.1 2E+02 0.0068 24.0 8.8 55 141-198 29-89 (196)
55 2dc1_A L-aspartate dehydrogena 31.4 1.5E+02 0.005 26.0 7.9 55 141-196 62-116 (236)
56 1umq_A Photosynthetic apparatu 31.1 99 0.0034 23.3 5.6 26 322-351 50-75 (81)
57 1z4h_A TORI, TOR inhibition pr 31.0 38 0.0013 24.0 3.2 21 334-354 14-34 (66)
58 1pdn_C Protein (PRD paired); p 30.1 94 0.0032 23.7 5.7 32 318-353 25-56 (128)
59 1x92_A APC5045, phosphoheptose 29.9 2.5E+02 0.0084 23.5 9.5 55 141-198 33-93 (199)
60 3e7l_A Transcriptional regulat 29.8 1.2E+02 0.0042 21.0 5.7 28 322-353 28-55 (63)
61 3g5j_A Putative ATP/GTP bindin 29.4 1.7E+02 0.0057 22.6 7.2 38 149-191 84-123 (134)
62 3ipr_A PTS system, IIA compone 29.0 58 0.002 27.2 4.4 51 141-196 46-102 (150)
63 4fyk_A Deoxyribonucleoside 5'- 29.0 94 0.0032 26.3 5.8 73 91-164 53-129 (152)
64 1y6u_A XIS, excisionase from t 28.2 48 0.0016 24.3 3.3 21 334-354 20-40 (70)
65 1gmx_A GLPE protein; transfera 27.6 2E+02 0.0067 21.7 7.6 85 94-191 5-92 (108)
66 2jn6_A Protein CGL2762, transp 27.3 1.1E+02 0.0036 22.9 5.4 36 317-356 13-49 (97)
67 1b8z_A Protein (histonelike pr 27.0 71 0.0024 24.0 4.3 25 327-351 1-25 (90)
68 1qgp_A Protein (double strande 26.8 27 0.00094 25.9 1.8 25 333-357 34-58 (77)
69 2heo_A Z-DNA binding protein 1 26.5 44 0.0015 23.9 2.8 26 334-359 29-54 (67)
70 1mul_A NS2, HU-2, DNA binding 25.8 80 0.0028 23.8 4.4 26 327-352 1-26 (90)
71 3mtq_A Putative phosphoenolpyr 24.7 67 0.0023 27.3 4.1 51 140-197 64-116 (159)
72 1ntc_A Protein (nitrogen regul 24.7 94 0.0032 23.4 4.6 27 322-352 60-86 (91)
73 1vee_A Proline-rich protein fa 24.1 2.6E+02 0.0088 22.0 7.5 106 94-205 5-122 (134)
74 2b0c_A Putative phosphatase; a 24.0 2.9E+02 0.0098 22.3 9.1 94 143-249 96-202 (206)
75 3g2b_A Coenzyme PQQ synthesis 23.9 1.9E+02 0.0064 22.3 6.3 38 316-353 45-82 (95)
76 1k78_A Paired box protein PAX5 23.8 1.3E+02 0.0045 24.1 5.7 33 318-354 40-72 (149)
77 3lkv_A Uncharacterized conserv 23.6 1.9E+02 0.0066 26.1 7.4 24 140-163 127-150 (302)
78 1h7n_A 5-aminolaevulinic acid 22.5 1.2E+02 0.004 29.2 5.6 90 81-183 84-198 (342)
79 2cpg_A REPA protein, transcrip 22.4 1.1E+02 0.0036 19.5 3.9 23 332-354 16-38 (45)
80 4gmf_A Yersiniabactin biosynth 22.4 84 0.0029 30.2 4.8 90 80-187 7-99 (372)
81 1p71_A DNA-binding protein HU; 22.1 90 0.0031 23.7 4.0 25 327-351 1-25 (94)
82 2jpc_A SSRB; DNA binding prote 22.0 84 0.0029 21.1 3.5 30 321-354 8-37 (61)
83 1aj0_A DHPS, dihydropteroate s 21.9 3.5E+02 0.012 25.0 8.8 66 98-166 79-146 (282)
84 2rn7_A IS629 ORFA; helix, all 21.8 1.4E+02 0.0046 22.7 5.1 26 329-354 29-54 (108)
85 2o97_B NS1, HU-1, DNA-binding 21.7 70 0.0024 24.2 3.3 25 327-351 1-25 (90)
86 3eme_A Rhodanese-like domain p 21.7 1.4E+02 0.0048 22.3 5.1 95 96-206 4-101 (103)
87 2qgh_A Diaminopimelate decarbo 21.6 5.3E+02 0.018 24.6 11.7 132 119-266 25-157 (425)
88 4gmk_A Ribose-5-phosphate isom 21.3 33 0.0011 31.3 1.4 108 85-203 24-156 (228)
89 1tx2_A DHPS, dihydropteroate s 20.9 2E+02 0.0069 26.9 6.9 93 102-210 108-203 (297)
90 1owf_A IHF-alpha, integration 20.7 99 0.0034 23.7 4.0 26 327-352 3-28 (99)
91 4a8t_A Putrescine carbamoyltra 20.6 3E+02 0.01 26.3 8.1 62 97-165 111-184 (339)
92 4f2g_A Otcase 1, ornithine car 20.3 3.7E+02 0.013 25.2 8.7 62 97-165 93-163 (309)
93 4ep1_A Otcase, ornithine carba 20.3 3.6E+02 0.012 25.7 8.7 83 97-211 118-209 (340)
94 3rhi_A DNA-binding protein HU; 20.1 68 0.0023 24.5 2.9 25 327-351 4-28 (93)
95 3lqk_A Dipicolinate synthase s 20.1 90 0.0031 27.6 4.1 41 152-193 6-46 (201)
96 2yci_X 5-methyltetrahydrofolat 20.0 3.4E+02 0.012 24.8 8.2 83 82-167 49-141 (271)
No 1
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=1.4e-62 Score=475.81 Aligned_cols=278 Identities=40% Similarity=0.626 Sum_probs=216.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEE
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (368)
|+|+||+||+||||+++||+||+++|++||+|+|+|||++.++|++++++++++++|+||+.+..+.+++.+++|++||+
T Consensus 14 ~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~~Va~ 93 (296)
T 3kwp_A 14 TGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGMQIAQ 93 (296)
T ss_dssp CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTCEEEE
T ss_pred cCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEe
Q 017645 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY 238 (368)
Q Consensus 159 vSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVly 238 (368)
+||+|||+|||||.++++.+.+.|++|++||||||+++|++++|+|+++|.|+||+|++..++...|+.++..+.|+|||
T Consensus 94 lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~g~~p~~~~~r~~~l~~l~~~~~tlV~y 173 (296)
T 3kwp_A 94 VSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFY 173 (296)
T ss_dssp ECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSEEEEEECCSSHHHHHHHHHTTTTCCSEEEEE
T ss_pred eccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCceeEEeeccCCcHHHHHHHHHhhcCCceeEee
Confidence 99999999999999999999999999999999999999999999999999999999998777778899999999999999
Q ss_pred cCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCcCccCCCCh----HH
Q 017645 239 VPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSE----DQ 314 (368)
Q Consensus 239 esp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~~~~~~~~~----~~ 314 (368)
++|||+.++++.|.+.++++++++|++++|+++|++++|+++++.+++.+..++||+||||.|..........+ .+
T Consensus 174 ~~~~rl~~~l~~L~~~~g~~~~v~v~~~lt~~~E~i~~gtl~el~~~~~~~~~~ge~vlvv~~~~~~~~~~~~~~~~~~~ 253 (296)
T 3kwp_A 174 EAPHRLKKTLQNLAAGFGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPAPTTAATTAVDLSEP 253 (296)
T ss_dssp ECGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEEEEEEHHHHHHHHHHSCCCSCEEEEECCCSSCC------------
T ss_pred eCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHhccHHHHHhhhcccccceeEEEEEcCCCCCCcccchhcccccc
Confidence 99999999999999888888999999999999999999999999999877778999999998765422111111 22
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 017645 315 LEKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFG 356 (368)
Q Consensus 315 ~~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~ 356 (368)
+.+.+..++++|+++|+|+|.+|+.+|++||++|+.++++.+
T Consensus 254 ~~~~~~~~~~~~~~~k~a~~~~a~~~g~~~~~~y~~~~~~~~ 295 (296)
T 3kwp_A 254 IDVQVDRLIAAGEKPNDAIKEVAKLRGAKKQEIYRQYHHLDE 295 (296)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHhccchHHHHHHHhhcccc
Confidence 445566777779999999999999999999999999987643
No 2
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=7.5e-46 Score=348.45 Aligned_cols=222 Identities=23% Similarity=0.366 Sum_probs=189.3
Q ss_pred CCCeEEEEecCCCCcc---chhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc-----EEEcCCCcHHHHHHHHHHHH
Q 017645 79 LEPGLYLVATPIGNLE---DITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-----LLSYHKFNESQREQTVLNRL 150 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~---dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~-----~is~~~~ne~~~~~~Ii~~l 150 (368)
|+|+||+||+|||||+ +||+||+++|++||+|+|+|+++++++|+.+++.++ ++.++++++++..+.+++.+
T Consensus 1 M~G~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (242)
T 1wyz_A 1 METALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPL 80 (242)
T ss_dssp -CCSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcchHHHHHhcCCCCceeeeeeecccccCHHHHHHHHHHHH
Confidence 4589999999999999 599999999999999999999988999998876655 67888888888889999999
Q ss_pred hCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhc
Q 017645 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN 230 (368)
Q Consensus 151 ~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~ 230 (368)
++|++||++||+|||++||||.++++.+++.|++|++|||+||+++|++++|+|+++|.|+||+|.+..++...|+.+++
T Consensus 81 ~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f~~~g~~p~~~~~~~~~l~~l~~ 160 (242)
T 1wyz_A 81 AGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQ 160 (242)
T ss_dssp HTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTHHHHHHHHHHH
T ss_pred HcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeEEEEEEcCCCccchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876555567888777
Q ss_pred C----CceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCC-CCcEEEEEeCCC
Q 017645 231 E----VKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQP-KGEITVLVEGKA 303 (368)
Q Consensus 231 ~----~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~-kge~vlvi~g~~ 303 (368)
. ..|+|||++++++.++++.|.+.+++++++++++++|+++|++++++++++.+. ..+. +++.+ +|+|+-
T Consensus 161 ~~~~~~~t~vl~~~~~~~~~~~~~l~~~~~~~~~v~vv~~~t~~~E~i~~~tl~~l~~~--~~~~~~~P~i-~vig~~ 235 (242)
T 1wyz_A 161 RVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGH--IPELSKIPCI-FLLYKL 235 (242)
T ss_dssp HHHHHTCEEEEEECGGGHHHHHHHHHHHSCSSSEEEEEESTTSSSCEEEEEEHHHHSSC--CC---CCCEE-EEEEC-
T ss_pred ccccCCCeEEEEEcHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCcEEEEeeHHHHHhh--hhccCCCCEE-EEEecc
Confidence 7 899999999999999999998878889999999999999999999999998763 1233 56754 445553
No 3
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=4.2e-43 Score=331.78 Aligned_cols=224 Identities=15% Similarity=0.193 Sum_probs=197.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEE
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (368)
++|+||+||+||||+++||+||+++|++||+|+|+|++++..+++.+..+++++..+.+++++..+.+++.+++|++|++
T Consensus 3 ~~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~ 82 (253)
T 4e16_A 3 AMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSVVR 82 (253)
T ss_dssp -CCCEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 56899999999999999999999999999999999988888888888877788877778888888999999999999999
Q ss_pred EccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEEEecCCCchhhHHHHHhhhcCC
Q 017645 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEV 232 (368)
Q Consensus 159 vSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fvGflp~~~~~~~~~L~~l~~~~ 232 (368)
++ +|||+|||++.++++.+.+.|++|++|||+||+++|++++|+|| ++|.|.++.++...++...++.++..+
T Consensus 83 l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 161 (253)
T 4e16_A 83 LQ-TGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKHQ 161 (253)
T ss_dssp EE-SBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCGGGSHHHHHTTC
T ss_pred Ee-CCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcchHHHHHHHhcCC
Confidence 96 99999999999999999999999999999999999999999999 679888776654322334577788889
Q ss_pred ceEEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 233 KTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 233 ~tlVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
.|+|||++++++.++++.|.+ +++++++++|++++|+++|++++++++++.+.+.+...++++++|| |+..
T Consensus 162 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivI-g~~~ 233 (253)
T 4e16_A 162 TSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIMV-GRFL 233 (253)
T ss_dssp SEEEEEECSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHTCCCSCEEEEE-SGGG
T ss_pred CeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhCCCCCCEEEEE-Cccc
Confidence 999999999999999999998 6877899999999999999999999999999877666789866655 6544
No 4
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=1.6e-40 Score=316.25 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=193.3
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEc
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvS 160 (368)
++||+||+|||||++||+||+++|++||+|+|+|+++++.+++.+..+++++.++.+++++..+.+++.+++|++||+++
T Consensus 4 m~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Va~L~ 83 (264)
T 3ndc_A 4 MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLH 83 (264)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTTSCGGGGGGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 57999999999999999999999999999999999988889998887888888888888899999999999999999996
Q ss_pred cCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEEEecCCCc-hhhHHHHHhhhcCCc
Q 017645 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHA-RSRTERLMLSANEVK 233 (368)
Q Consensus 161 daGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fvGflp~~~-~~~~~~L~~l~~~~~ 233 (368)
+|||+|||++.++++.+.+.|++|++|||+||+++|++++|+|| ++|.|+++..+.. .+..+.|+.+++.+.
T Consensus 84 -~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s~~~~~~~~~~~~~l~~l~~~~~ 162 (264)
T 3ndc_A 84 -SGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGA 162 (264)
T ss_dssp -SBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEECCTTTCCCCTTCCHHHHHTTTC
T ss_pred -CCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEeccCCCCCcchHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999 5677775432211 112235777888889
Q ss_pred eEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 234 TQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 234 tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
|+|||++++++.++++.|.+.++++++++|++++|+++|++++++++++.+.. ....+++ ++||+|+..
T Consensus 163 tlvl~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~-~~~~~~~-~viivg~~~ 231 (264)
T 3ndc_A 163 VLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSL-GAELERT-ALILVGRSL 231 (264)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEEEEEEGGGSCGGG-SSSSCCC-EEEEESGGG
T ss_pred cEEEecCHHHHHHHHHHHHhhCCCCCEEEEEEECCCCCeEEEEEEHHHHHHHH-hccCCcc-EEEEEcCcC
Confidence 99999999999999999998888899999999999999999999999998766 4456777 555567654
No 5
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=5.7e-40 Score=315.20 Aligned_cols=222 Identities=19% Similarity=0.258 Sum_probs=193.7
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEc
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvS 160 (368)
++||+||+|||||++||+||+++|++||+|+|+|++....+++.+..+++++..+.+++++..+.+++.+++|++|++++
T Consensus 21 ~~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~Vv~L~ 100 (285)
T 1cbf_A 21 MKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVH 100 (285)
T ss_dssp SEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCHHHHTTSCTTCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 57999999999999999999999999999999998888889988877788887777788888899999999999999996
Q ss_pred cCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEEEecCCCchhhHHHHHhhhcCCce
Q 017645 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEVKT 234 (368)
Q Consensus 161 daGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fvGflp~~~~~~~~~L~~l~~~~~t 234 (368)
.|||++||++.++++.+.+.|++|++|||+||+++|++++|+|| ++|.|.++..++...+...+..++....|
T Consensus 101 -~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~~~~~l~~l~~~~~t 179 (285)
T 1cbf_A 101 -TGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCT 179 (285)
T ss_dssp -SBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCCGGGCHHHHHTTCSE
T ss_pred -CCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcchHHHHHHHhcCCCe
Confidence 69999999999999999999999999999999999999999998 67888766554221223457777888899
Q ss_pred EEEecCcccHHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 235 QIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 235 lVlyesp~rl~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
+|||++++++.++++.|.+ ++++++++++++++|+++|++++++++++.+.......+++.++| +|+..
T Consensus 180 lvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~lg~~~E~i~~~tl~el~~~~~~~~~~~~~vii-ig~~~ 249 (285)
T 1cbf_A 180 IALFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMIL-AGWAL 249 (285)
T ss_dssp EEEESCTTCHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEEE-ESGGG
T ss_pred EEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEECCcCCcEEEEecHHHHHHHHHhcCCCCcEEEE-EchHh
Confidence 9999999999999999988 787789999999999999999999999998876555567775554 56543
No 6
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=3.3e-39 Score=311.60 Aligned_cols=221 Identities=19% Similarity=0.233 Sum_probs=187.3
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEE------EcCCCcHHHHHHHHHHHHhC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHKFNESQREQTVLNRLKQ 152 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~i------s~~~~ne~~~~~~Ii~~l~~ 152 (368)
.+|+||+||+|||||++||+||+++|++||+|+| |++++.++|+.+....+.+ .++.+++++..+.+++.+++
T Consensus 23 ~~g~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~~ 101 (294)
T 2ybo_A 23 PAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVY-DRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQ 101 (294)
T ss_dssp CTTCEEEEEEESSCGGGSCHHHHHHHTTCSEEEE-CTTSCHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEE-cCCCCHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHHC
Confidence 4589999999999999999999999999999999 7888989999887655443 34455677788889999999
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEE-EecCCCchhhHHHH
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFV-GFLPKHARSRTERL 225 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fv-Gflp~~~~~~~~~L 225 (368)
|++|+++ ++|||+|||++.++++.+.+.|++|++|||+||+++|++++|+|+ ++|.|+ |+.+.. .++...+
T Consensus 102 G~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~sg~~~~~-~~~~~~~ 179 (294)
T 2ybo_A 102 QRRVVRL-KGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQND-GRLDLDW 179 (294)
T ss_dssp TCCEEEE-EEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEEECSCCTT-SSCCCCH
T ss_pred CCeEEEE-cCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEEcccCCcc-cchhhHH
Confidence 9999999 799999999999999999999999999999999999999999999 689988 665432 1122347
Q ss_pred HhhhcCCceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCC
Q 017645 226 MLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (368)
Q Consensus 226 ~~l~~~~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~ 303 (368)
+.+.....|+|||++++++.++++.|.+. +++++++++++++|+++|++++++++++.+.......+++.++|| |+.
T Consensus 180 ~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vivI-g~~ 257 (294)
T 2ybo_A 180 AGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVV-GQV 257 (294)
T ss_dssp HHHTSSSCEEEEESCGGGHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEEEE-STH
T ss_pred HHHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHHHHHHhcCCCCCEEEEE-Cch
Confidence 77888899999999999999999999885 777899999999999999999999999988765555678755554 654
No 7
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=5.4e-39 Score=307.94 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=187.8
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEE------cCCCcHHHHHHHHHHHHh
Q 017645 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLK 151 (368)
Q Consensus 78 ~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is------~~~~ne~~~~~~Ii~~l~ 151 (368)
+.+|+||+||+|||||++||+||+++|++||+|+| |++++.+++++++.+++++. +|.+++++..+.+++.++
T Consensus 12 ~~~g~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~-d~~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~ 90 (280)
T 1s4d_A 12 LEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVH-DALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELAR 90 (280)
T ss_dssp CCSSCEEEEECBSSCTTSSBHHHHHHHHHCSEEEE-CSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999 78888889998877777665 345677888888999999
Q ss_pred CCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC------cEEEEEecCCCchh----h
Q 017645 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS----R 221 (368)
Q Consensus 152 ~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~------~f~fvGflp~~~~~----~ 221 (368)
+|++|++++ .|||++||+|.++++.+.+.|++|++|||+||+++|++++|+||. .|.|+ +.|.+. +
T Consensus 91 ~G~~Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~---~~~~~~~~~~~ 166 (280)
T 1s4d_A 91 AGNRVLRLK-GGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFL---TGHDSSGLVPD 166 (280)
T ss_dssp TTCCEEEEE-SBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEE---ECCC-------
T ss_pred CCCeEEEEc-CCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEE---CCcCCcccccc
Confidence 999999996 599999999999999999999999999999999999999999995 45555 555432 1
Q ss_pred HHHHHhhhcCCceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEe
Q 017645 222 TERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVE 300 (368)
Q Consensus 222 ~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~ 300 (368)
...++.++....|+|||++++++.++++.|.+. +++++++++++++|+++|++++++++++.+.+.+...+++.++| +
T Consensus 167 ~~~~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~viv-i 245 (280)
T 1s4d_A 167 RINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVV-V 245 (280)
T ss_dssp CCCHHHHHTTCSEEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHHTCCSSEEEE-E
T ss_pred cccHHHHhCCCCeEEEECchhhHHHHHHHHHhcCCCCCCEEEEEEeCCCCCeEEEEecHHHHHHHHHhcCCCCCEEEE-E
Confidence 124677778889999999999999999999884 77789999999999999999999999999876554567885555 4
Q ss_pred CCCc
Q 017645 301 GKAI 304 (368)
Q Consensus 301 g~~~ 304 (368)
|+..
T Consensus 246 g~~~ 249 (280)
T 1s4d_A 246 GEVV 249 (280)
T ss_dssp SGGG
T ss_pred Cchh
Confidence 7544
No 8
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.1e-38 Score=300.96 Aligned_cols=216 Identities=20% Similarity=0.185 Sum_probs=181.2
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcC--CCCcEEEcCCCcHHHHHHHHHHHHhCCCe
Q 017645 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN--IKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (368)
Q Consensus 78 ~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~--i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ 155 (368)
-|.|.+|+||+|||||++||+||+++|++||+|+|+|++. +.+. ..++++..++.++..+.+.+++.+++|++
T Consensus 6 ~~~~~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~~-----~~~~~~~~~~~~~~~~~~ei~~~~~li~~~~~G~~ 80 (251)
T 3nut_A 6 HMSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYV-----ARIAPREGLTLHPTDNRVELDRATHALEMAAEGRR 80 (251)
T ss_dssp --CCEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGGG-----TTCCCCTTCEEEECCSSCCHHHHHHHHHHHHTTCE
T ss_pred cccccEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCccc-----ccccccCCCEEeecCCHHHHHHHHHHHHHHHCCCe
Confidence 3779999999999999999999999999999999998643 3232 34566666666666666789999999999
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhh----CCCCEEEEcCccHHHHHHHhcCCCC-CcEEEEEecCCC--chhhHHHHHhh
Q 017645 156 VALISDAGTPGISDPGTELAKLCVD----EKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKH--ARSRTERLMLS 228 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~----~gi~V~vIPGiSA~~aA~a~sGlp~-~~f~fvGflp~~--~~~~~~~L~~l 228 (368)
||+++ +|||+|||+|.++++.+.+ .|++|++|||+||+++|++++|+|| ++|.|++|.++. ..+..+.|+.+
T Consensus 81 Vv~L~-~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~s~~~~~~~~~~~~~~l~~l 159 (251)
T 3nut_A 81 VVVVS-SGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHA 159 (251)
T ss_dssp EEEEE-SBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred EEEEe-CCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeEEEEecCCCCChHHHHHHHHHH
Confidence 99996 9999999999999999997 8999999999999999999999999 899999998753 23345566777
Q ss_pred hcCCceEEEecCc-----ccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCC
Q 017645 229 ANEVKTQIFYVPP-----HKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (368)
Q Consensus 229 ~~~~~tlVlyesp-----~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~ 303 (368)
+..+.|+|||+++ +++.++++.|.++++++++++|++++|+++|++++++++++.+. . .+.+++|++|+.
T Consensus 160 ~~~~~tlvl~~~~~~~~p~~i~~~~~ll~~g~~~~~~v~v~~~l~~~~E~i~~~tl~~l~~~----~-~~~~s~iiVg~~ 234 (251)
T 3nut_A 160 ARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPE----M-ADMRTVVLVGNA 234 (251)
T ss_dssp HHTTCEEEEESCSCSSSTTHHHHHHHHHHHHSCTTCEEEEEESTTSTTCEEEEEEGGGCCGG----G-CCTTEEEEECCS
T ss_pred hCCCCEEEEECCccccchhHHHHHHHHHHhCCCCCCEEEEEeeCCCCCcEEEEeEHHHHhhc----C-CCCCEEEEECCc
Confidence 7888899999874 57888888787788889999999999999999999999998752 1 345688888876
Q ss_pred c
Q 017645 304 I 304 (368)
Q Consensus 304 ~ 304 (368)
.
T Consensus 235 ~ 235 (251)
T 3nut_A 235 A 235 (251)
T ss_dssp S
T ss_pred c
Confidence 5
No 9
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=7.5e-39 Score=298.68 Aligned_cols=210 Identities=25% Similarity=0.305 Sum_probs=172.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEE------cCCCcHHHHHHHHHHHHhC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLKQ 152 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is------~~~~ne~~~~~~Ii~~l~~ 152 (368)
|+|+||+||+|||||++||+||+++|++||+|+| |+++++++++.+ +++++. +|.+++++..+.+++.+++
T Consensus 1 M~g~l~vVG~GpG~~~~LT~~A~~~L~~advv~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (235)
T 1ve2_A 1 MRGKVYLVGAGFGGPEHLTLKALRVLEVAEVVLH-DRLVHPGVLALA--KGELVPVGKEGYGGKTPQEAITARLIALARE 77 (235)
T ss_dssp CCCEEEEEECBSSSGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTC--CSEEEEC-------CCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeeCCCCHHHHHHHHHHHHHhCCEEEE-eCCCCHHHHHhh--CcEEEEecccCcccccCHHHHHHHHHHHHHc
Confidence 4589999999999999999999999999999999 788888898876 555553 4456777888889999999
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEEEecCCCchhhHHHHH
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLM 226 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fvGflp~~~~~~~~~L~ 226 (368)
|++|+++ ++|||++||++.++++.+.+.|++|++|||+||+++|++++|+|| ++|.|+ +.+. .. +
T Consensus 78 g~~V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~---s~~~-~~-~--- 148 (235)
T 1ve2_A 78 GRVVARL-KGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVA---TGHD-PA-L--- 148 (235)
T ss_dssp TCEEEEE-ESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEE---ESSC-TT-S---
T ss_pred CCeEEEE-cCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEe---CCCC-ch-h---
Confidence 9999999 799999999999999999999999999999999999999999999 678887 2222 11 1
Q ss_pred hhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 227 LSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 227 ~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
.+. ...|+|+|++++++.++++.|.+++++++++++++++|+++|++++++++++.+. ....+++.++|| |+..
T Consensus 149 ~l~-~~~t~vl~~~~~~~~~i~~~L~~g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~~--~~~~~~~~vivi-g~~~ 222 (235)
T 1ve2_A 149 PLP-RADTLVLLMPLHTLGGLKERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGL--GEGLPSPALLVV-GKVV 222 (235)
T ss_dssp CCC-BCSEEEEEC------CHHHHHHTTSCTTSEEEEEESTTSTTCEEEEEEGGGTTTT--TTTCCSSEEEEE-SGGG
T ss_pred hhc-cCCeEEEEcChhhHHHHHHHHHhcCCCCCeEEEEEECCcCCeEEEEEEHHHHHHH--hcCCCCCEEEEE-ChHh
Confidence 445 6789999999999999999998877778999999999999999999999999764 224578865555 6543
No 10
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=7e-38 Score=292.80 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=178.1
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcC-----CCcHHHHHHHHHHHHhCCCe
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH-----KFNESQREQTVLNRLKQGEI 155 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~-----~~ne~~~~~~Ii~~l~~Gk~ 155 (368)
|+||+||+|||||++||+||+++|++||+|+| |+++++++++.+. ++.+.++ .+++++..+.+++.+++|++
T Consensus 1 G~l~iVG~GpG~~~~LT~~A~~~L~~advI~~-~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 77 (239)
T 1va0_A 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLY-DRLVDERVLALAP--GEKVYVGKEEGESEKQEEIHRLLLRHARAHPF 77 (239)
T ss_dssp CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTCC--SEEEECCCCC----CHHHHHHHHHHHHHTSSE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHhhcc--ccEEecccccccccCHHHHHHHHHHHHHCCCc
Confidence 68999999999999999999999999999999 7888899998876 5666555 45667778888999999999
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEEEecCCCchhhHHHHHhhh
Q 017645 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSA 229 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fvGflp~~~~~~~~~L~~l~ 229 (368)
|+++ ++|||+|||++.++++.+.+.|++|++|||+||+++| |+|| ++|.|++++++.. +...++.+.
T Consensus 78 V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa----g~pl~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 150 (239)
T 1va0_A 78 VVRL-KGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS----GLPLTHRGLAHGFAAVSGVLEGG--GYPDLRPFA 150 (239)
T ss_dssp EEEE-ESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT----CCCSSBTTTBSEEEEEESSCGGG--CCCCCTTTT
T ss_pred EEEE-eCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc----CCCcccCCccceEEEEeccCCcc--chhhHHHhc
Confidence 9999 7999999999999999999999999999999999999 9999 6799987754322 112455666
Q ss_pred cCCceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCCc
Q 017645 230 NEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (368)
Q Consensus 230 ~~~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~~ 304 (368)
.. .|+|||++++++.++++.|.+. +++++++++++++|+++|++++++++++.+ .....+++.++|| |+..
T Consensus 151 ~~-~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~--~~~~~~~~~vivi-g~~~ 222 (239)
T 1va0_A 151 RV-PTLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVAE--GKVEVRPPALWIL-GEVV 222 (239)
T ss_dssp TC-SSEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEETTTSTTCEEEEEEHHHHHT--TCCCCCSSEEEEE-SGGG
T ss_pred CC-CcEEEEccHHHHHHHHHHHHhcCCCCCCcEEEEEECCCCCcEEEEeEHHHHHh--hhcCCCCCEEEEE-chhh
Confidence 66 8999999999999999999885 777899999999999999999999999976 2234678866666 6544
No 11
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=3.4e-36 Score=306.68 Aligned_cols=219 Identities=19% Similarity=0.268 Sum_probs=184.3
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEE------cCCCcHHHHHHHHHHHHh
Q 017645 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLK 151 (368)
Q Consensus 78 ~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is------~~~~ne~~~~~~Ii~~l~ 151 (368)
...|+||+||+|||||++||+||+++|++||+|+| |++++.++++.+..+++.+. .|.+++++..+.+++.++
T Consensus 213 ~~~g~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~ 291 (457)
T 1pjq_A 213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVY-DRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQ 291 (457)
T ss_dssp CCCCEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHccHHHHHHHHhCCEEEE-eCCCCHHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999 68899999998876666554 345567788888999999
Q ss_pred CCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC------CcEEEE-EecCCCchhhHHH
Q 017645 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFV-GFLPKHARSRTER 224 (368)
Q Consensus 152 ~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~------~~f~fv-Gflp~~~~~~~~~ 224 (368)
+|++|+++ ++|||+|||+|.++++.+.+.|++|++|||+||+++|++++|+|+ ++|.|+ ||.+.. ....
T Consensus 292 ~G~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~vsg~~~~~---~~~~ 367 (457)
T 1pjq_A 292 KGKRVVRL-KGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTG---GELD 367 (457)
T ss_dssp TTCEEEEE-ESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEECC---------CCC
T ss_pred CCCcEEEE-eCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEEeCCCCCc---chhh
Confidence 99999999 799999999999999999999999999999999999999999999 568886 443211 1123
Q ss_pred HHhhhcCCceEEEecCcccHHHHHHHHHHH-hCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCCC
Q 017645 225 LMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (368)
Q Consensus 225 L~~l~~~~~tlVlyesp~rl~~~l~~L~~~-~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~~ 303 (368)
|+.+.....|+|||++++++.++++.|.+. +++++++++++++|+++|++++|+++++.+... ..+++. +||+|+.
T Consensus 368 ~~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~--~~~~~~-viivg~~ 444 (457)
T 1pjq_A 368 WENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPA-LIIVGRV 444 (457)
T ss_dssp HHHHHSSSEEEEESSCSSSHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHTT--SCCSSE-EEEESGG
T ss_pred HHHHhcCCCeEEEEcchhhHHHHHHHHHhcCCCCCCEEEEEEECCCCCcEEEEEEHHHHHHHhc--CCCCCE-EEEEChh
Confidence 677778899999999999999999999885 777899999999999999999999999987543 356764 5555765
Q ss_pred c
Q 017645 304 I 304 (368)
Q Consensus 304 ~ 304 (368)
.
T Consensus 445 ~ 445 (457)
T 1pjq_A 445 V 445 (457)
T ss_dssp G
T ss_pred h
Confidence 4
No 12
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=100.00 E-value=3.4e-36 Score=284.74 Aligned_cols=211 Identities=16% Similarity=0.148 Sum_probs=169.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH----HHHhh-c----CCCCcEE----EcCCCcH------
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG----KLLQY-Y----NIKTPLL----SYHKFNE------ 139 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~----~LL~~-~----~i~~~~i----s~~~~ne------ 139 (368)
|+|+||+||+|||||++||+||+++|++||+|+|++++.++ .+++. + ..+++++ +++++++
T Consensus 3 ~~g~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
T 2e0n_A 3 NQGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASY 82 (259)
T ss_dssp --CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCEECHHHHHHTTTTCCGGGEEEEEEECC---------C
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHH
Confidence 45899999999999999999999999999999999765432 23332 1 2234454 4555543
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCC----CcEEEEEecC
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT----DEFTFVGFLP 215 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~----~~f~fvGflp 215 (368)
++..+.|++.+++|++||+++ .|||++||++.++++.+.+.|++|++|||+||+++|++++|+|| ..|.|+ |
T Consensus 83 ~~~~~~i~~~~~~g~~Va~l~-~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~~---~ 158 (259)
T 2e0n_A 83 AANYASMAEEVQAGRRVAVVS-VGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLVL---A 158 (259)
T ss_dssp GGGHHHHHHHHHTTCEEEEEE-SBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEEE---C
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEEE---c
Confidence 566788999999999999996 89999999999999999999999999999999999999999999 457665 6
Q ss_pred CCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcE
Q 017645 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (368)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~ 295 (368)
.+.. ...+..+.....|+|||++++++.++++.|.+. + .++++++++|+++|++++ +++++.+. . .+++
T Consensus 159 ~~~~--~~~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~-g--~~v~v~~~l~~~~E~i~~-~l~el~~~----~-~~~~ 227 (259)
T 2e0n_A 159 QIDE--IGELERALVTHSTVVVMKLSTVRDELVSFLERY-A--KPFLYAEKVGMAGEFITM-EVDALRSR----A-IPYF 227 (259)
T ss_dssp SCSS--THHHHHHHTTCSEEEECCTTSSGGGHHHHHHHH-C--SCEEEEESTTSTTCEEEC-CTHHHHSC----C-CCSS
T ss_pred CCCC--HHHHHHHhhcCCEEEEEcccccHHHHHHHHHhC-C--CCEEEEEECCCCCeEEEc-cHHHHhhC----C-CCCc
Confidence 6542 245666666778999999999999999998874 4 339999999999999999 99998642 2 4677
Q ss_pred EEEEeCCCc
Q 017645 296 TVLVEGKAI 304 (368)
Q Consensus 296 vlvi~g~~~ 304 (368)
++|++|+..
T Consensus 228 s~iii~~~~ 236 (259)
T 2e0n_A 228 SLLVCSPHC 236 (259)
T ss_dssp EEEEECGGG
T ss_pred EEEEEeccC
Confidence 888888654
No 13
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=100.00 E-value=6.2e-36 Score=289.13 Aligned_cols=216 Identities=24% Similarity=0.256 Sum_probs=181.8
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcC--CCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEE
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN--IKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~--i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (368)
|+||+||+|||||++||+||+++|++||+|+|++++ .+++..+. ..++++.++++++.++.+.+++.+++|++||+
T Consensus 2 G~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~~--l~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a~~G~~Va~ 79 (295)
T 2zvb_A 2 GELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTY--VKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVAL 79 (295)
T ss_dssp CEEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHHH--HHHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCcH--HHHHHHhhccCCCEEEecCCchHHHHHHHHHHHHHCCCcEEE
Confidence 789999999999999999999999999999998754 35666653 35677788887777788888998899999999
Q ss_pred EccCCCCCCCCcHHHHHHHhhhCC--------------------CCEEEEcCccHHHHHHHhcCCCC-CcEEEEEecCC-
Q 017645 159 ISDAGTPGISDPGTELAKLCVDEK--------------------IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPK- 216 (368)
Q Consensus 159 vSdaGdP~isdpg~~Lv~~~~~~g--------------------i~V~vIPGiSA~~aA~a~sGlp~-~~f~fvGflp~- 216 (368)
++ .|||++|+.+.++.+.+.+.+ ++|++|||+||+++|++++|+|| ++|.|+++...
T Consensus 80 L~-~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~~~~is~~~~~ 158 (295)
T 2zvb_A 80 VS-GGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLL 158 (295)
T ss_dssp EE-SBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSCEEEEECCCTT
T ss_pred Ee-CCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCCCeEEeCCCCC
Confidence 95 899999999999888887654 99999999999999999999998 78999976322
Q ss_pred -CchhhHHHHHhhhcCCceEEEecC-----cccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCC
Q 017645 217 -HARSRTERLMLSANEVKTQIFYVP-----PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQ 290 (368)
Q Consensus 217 -~~~~~~~~L~~l~~~~~tlVlyes-----p~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~ 290 (368)
+.....+.|+.+.....|+|||+. |+++.++++.|.+.+++++++++++++|+++|++++++++++.+.
T Consensus 159 ~~~~~l~~~l~~~~~~~~t~vl~~~~~~~r~~~~~~i~~~L~~~~~~~~~v~vv~~l~~~~E~i~~~tL~el~~~----- 233 (295)
T 2zvb_A 159 TPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEVALTTLEGLREA----- 233 (295)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCCCSSCTTHHHHHHHHHTTTSCTTCEEEEEESTTSTTCEEEEEETGGGGGC-----
T ss_pred CCHHHHHHHHHHhhcCCcEEEEEcCCcccchhhHHHHHHHHHhcCCCCCEEEEEecCCCCCcEEEEeeHHHHHhc-----
Confidence 222334556666667889999985 458999999998877678999999999999999999999998653
Q ss_pred CCCcEEEEEeCCCc
Q 017645 291 PKGEITVLVEGKAI 304 (368)
Q Consensus 291 ~kge~vlvi~g~~~ 304 (368)
..+++++||+|+..
T Consensus 234 ~~~~~svviig~~~ 247 (295)
T 2zvb_A 234 EAGMLTTVVIGNRQ 247 (295)
T ss_dssp CCCTTEEEEECCTT
T ss_pred cCCCCEEEEECCcc
Confidence 35788999998765
No 14
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.5e-35 Score=274.92 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=166.8
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH-----HHHhh-cCC---CCcEEE----cCCC------cH
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG-----KLLQY-YNI---KTPLLS----YHKF------NE 139 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~-----~LL~~-~~i---~~~~is----~~~~------ne 139 (368)
|+|+||+||+|||||++||+||+++|++||+|+|++++.++ .+++. +.. +++++. ++++ ++
T Consensus 1 M~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (232)
T 2qbu_A 1 MHGKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHW 80 (232)
T ss_dssp CCCCEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHH
T ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHH
Confidence 46899999999999999999999999999999998876432 23332 221 344442 2322 24
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC----cEEEEEecC
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLP 215 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~----~f~fvGflp 215 (368)
++..+.+++.+++|++||+++ .|||++||++.++++.+.+.|++|++|||+||+++|++++|+|+. .|.|+ |
T Consensus 81 ~~~~~~i~~~~~~g~~V~~l~-~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~---~ 156 (232)
T 2qbu_A 81 DSAARMVAAELEDGRDVAFIT-LGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVV---P 156 (232)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-SBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEEE---S
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEEE---e
Confidence 566788889899999999996 699999999999999999999999999999999999999999973 56664 6
Q ss_pred CCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcE
Q 017645 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (368)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~ 295 (368)
.+.. .|..+.....|+|||++++++.++++.|.+ ++.++++++++++|+++|+++++ ++ . ..+++
T Consensus 157 ~~~~----~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~-~g~~~~v~v~~~l~~~~E~i~~~-l~--------~-~~~~l 221 (232)
T 2qbu_A 157 RVDD----RFERVLRDVDACVIMKTSRHGRRAMEVVES-DPRGKDVVSVANCSMDDEVVERG-FA--------S-GGGYL 221 (232)
T ss_dssp SCCH----HHHHHGGGCSEEEESSHHHHHHHHHHHHHH-SSSCCEEEEEESTTSTTCEEEES-CC--------S-CCCSS
T ss_pred CCHH----HHHHHhhcCCeEEEEcccCcHHHHHHHHHh-cCCCCcEEEEEECCCCCcEEEcC-CC--------c-CCCcc
Confidence 6542 566666667899999999999999999987 46668999999999999999984 65 1 25778
Q ss_pred EEEEeCCC
Q 017645 296 TVLVEGKA 303 (368)
Q Consensus 296 vlvi~g~~ 303 (368)
++|++++.
T Consensus 222 s~vii~~~ 229 (232)
T 2qbu_A 222 ATTLVRFR 229 (232)
T ss_dssp EEEEEEC-
T ss_pred EEEEEecC
Confidence 88888764
No 15
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=2.1e-36 Score=291.98 Aligned_cols=216 Identities=18% Similarity=0.207 Sum_probs=172.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCC----CcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTR----HSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR----~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk 154 (368)
..|+||+||+||||+++||+||+++|++||+|+|+++| .+.++|+.+ .+++++.++++++++..+.+++.+++ +
T Consensus 19 ~~~~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~~~~L~~~-~~~~~i~~~~~~~~~~~~~i~~~a~~-~ 96 (292)
T 3i4t_A 19 PGSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEF-YGKKVIIGDRDLVETEADQILEPAKT-K 96 (292)
T ss_dssp -CCEEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSCHHHHHHH-HTSCCEEC-------CCCTTHHHHTT-S
T ss_pred CCCEEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCCHHHHHhC-CCCeEEEcccccHHHHHHHHHHHhcC-C
Confidence 45899999999999999999999999999999998765 567888877 56778888877776667778888887 9
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcE------EEE--EecCCCchhhHHHHH
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF------TFV--GFLPKHARSRTERLM 226 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f------~fv--Gflp~~~~~~~~~L~ 226 (368)
+|++++ +|||+|||+|.++++++.+.|++|++|||+||++ |++++|+|++.| .|+ ++.|.+. ....+.
T Consensus 97 ~Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~-A~a~~G~pl~~~~~~~sv~~~t~~~~p~~~--~~~~~~ 172 (292)
T 3i4t_A 97 NVALLV-VGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMN-AIGCSGLQLYRFGQTVSVCFWSEHWRPSSY--YPKIKI 172 (292)
T ss_dssp EEEEEE-SBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHH-HGGGGSCCGGGBCCCEEECCCBTTBCCCTH--HHHHHH
T ss_pred CEEEEe-cCCCCccccHHHHHHHHHHCCCcEEEECCHHHHH-HHHHhCCCcccCCceeEEEEEeCCCCCCcc--HHHHHH
Confidence 999996 9999999999999999999999999999999987 579999999854 332 3333322 344577
Q ss_pred hhhcCCceEEE------------------------ecCcccHHHHHHHHHH-----HhCCCceeeeecccCCCccEEEEe
Q 017645 227 LSANEVKTQIF------------------------YVPPHKLLQFLEETSL-----LFGYSRRCVIAREITKMHEEFWRG 277 (368)
Q Consensus 227 ~l~~~~~tlVl------------------------yesp~rl~~~l~~L~~-----~~g~~~~v~v~~eLtk~~E~i~~g 277 (368)
.++....|+|| |++++++.+.+.++.+ +++++++++|++++|+++|++++|
T Consensus 173 ~l~~~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~~E~i~~~ 252 (292)
T 3i4t_A 173 NRDNNMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYG 252 (292)
T ss_dssp HHHTTCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTSTTCEEEEE
T ss_pred HhhcCCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCCceEEEEE
Confidence 88889999999 8999996665544333 577799999999999999999999
Q ss_pred ehhhHHHHHHhCCCCCcEEEEEeCCC
Q 017645 278 TLGEAKEAFSSHQPKGEITVLVEGKA 303 (368)
Q Consensus 278 tl~el~~~~~~~~~kge~vlvi~g~~ 303 (368)
|++++.+. +.+ ....++||+|+.
T Consensus 253 tL~~l~~~--~~~-~~~~~liivG~~ 275 (292)
T 3i4t_A 253 KMKDLLHY--DFG-APMHCLLIPAPQ 275 (292)
T ss_dssp EHHHHTTC--CCC-SSCEEEEECCSS
T ss_pred EHHHHHhh--hcC-CCCCEEEEECCc
Confidence 99999862 111 235688888863
No 16
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=100.00 E-value=8.1e-37 Score=292.64 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=159.2
Q ss_pred CCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcCCC--CcEEEcCC----------
Q 017645 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIK--TPLLSYHK---------- 136 (368)
Q Consensus 77 ~~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~--------~~LL~~~~i~--~~~is~~~---------- 136 (368)
..|+|+||+||+|||||++||+||+++|++||+|+|++++.+ .++++.+... ++++.++.
T Consensus 18 ~~m~g~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~Y 97 (275)
T 3nd1_A 18 GSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSY 97 (275)
T ss_dssp --CCEEEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC-------
T ss_pred CCCCcEEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccchh
Confidence 347799999999999999999999999999999999998765 6788877433 56666543
Q ss_pred -------C--cHHHHHHHHHHHHhC-CCeEEEEccCCCCCCCCcHHHHHHHhhh-CCCCEEEEcCccHHHHHHHhcCCCC
Q 017645 137 -------F--NESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVD-EKIPVVPIPGASAFVAALSASGLAT 205 (368)
Q Consensus 137 -------~--ne~~~~~~Ii~~l~~-Gk~ValvSdaGdP~isdpg~~Lv~~~~~-~gi~V~vIPGiSA~~aA~a~sGlp~ 205 (368)
| +++...+.|++.+++ |++||+++ .|||+|||++.++++.+.+ .|++|++|||+||+++|++++|+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~-~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~pl 176 (275)
T 3nd1_A 98 RKGVDDWHDAIAETWLSEITAHVPGLEGRVALLV-WGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPL 176 (275)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEE-SBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCCS
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEe-CCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCCC
Confidence 1 122234557888999 99999996 7999999999999999998 7999999999999999999999999
Q ss_pred CcE-EEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHH
Q 017645 206 DEF-TFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKE 284 (368)
Q Consensus 206 ~~f-~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~ 284 (368)
+++ .+++|+|.+..+ .+..+...+.++|||++++++.++ . ++++++++++++|+++|++++|+++++.+
T Consensus 177 ~~~~~~~~~l~g~~~~---~~~~~~~~~~~vvl~~~~~~l~~i----~---~~~~~v~v~~~l~~~~E~i~~gtL~el~~ 246 (275)
T 3nd1_A 177 NDIGAPVVITTGRQLR---DHGWPAGTETVVAMLDGECSFQSL----P---PDGLTIFWGACVAMPEEVLIRGPVAEVTD 246 (275)
T ss_dssp SCTTCCEEEEEHHHHH---HHCSCTTCSEEEEESCSSCGGGGS----C---CTTEEEEEEESTTSTTCEEEEEEHHHHHH
T ss_pred ccCCcEEEEEcCCCcc---hHHHHhCCCCEEEEECCcccHHHH----h---CCCCEEEehhccCCCCcEEEEEEHHHHHH
Confidence 876 355677754321 122233445566788888876442 1 35799999999999999999999999988
Q ss_pred HHH
Q 017645 285 AFS 287 (368)
Q Consensus 285 ~~~ 287 (368)
.+.
T Consensus 247 ~~~ 249 (275)
T 3nd1_A 247 EIL 249 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 17
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=100.00 E-value=1e-34 Score=275.45 Aligned_cols=214 Identities=17% Similarity=0.210 Sum_probs=169.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCC-----CcHHHHhhcCCCCcEEEcCCCcHHHHHHHHH-HHHhCCCe
Q 017645 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTR-----HSGKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGEI 155 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR-----~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii-~~l~~Gk~ 155 (368)
+||+||+|||||++||+||+++|++||+|+|++++ ++.++|+.+ ++++++..+.++.++..+.++ +.++ |++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~ 79 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRL-IGKEIRVLSREDVELNFENIVLPLAK-END 79 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCCHHHHHHH-HTSCCEEECHHHHHHHHHHHTHHHHT-TSC
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCCHHHHHhc-cCCcEEEcCcccHHHHHHHHHHHHhC-CCc
Confidence 69999999999999999999999999999998654 256778876 466777666556666677887 7776 799
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcE----EEEEecCCCch--hhHHHHHhhh
Q 017645 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF----TFVGFLPKHAR--SRTERLMLSA 229 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f----~fvGflp~~~~--~~~~~L~~l~ 229 (368)
||+++ +|||++|+++.++++.+.+.|+++++|||+||+++| +++|+||+++ .|+ |...|.. ...+.+...+
T Consensus 80 V~~l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aa-a~~g~pl~~~~~~~~v~-~~s~~~~~~~~~~~l~~~~ 156 (265)
T 2z6r_A 80 VAFLT-PGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAV-GITGLHIYKFGKSATVA-YPEGNWFPTSYYDVIKENA 156 (265)
T ss_dssp EEEEE-SBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHG-GGGTCCGGGBCCCEEEC-CCBTTBCCCHHHHHHHHHH
T ss_pred EEEEE-CCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHH-HHhCCCccCCCccEEEE-EecCCcCCCchHHHHHHHH
Confidence 99995 999999999999999999999999999999999999 9999999753 342 2222221 1234566665
Q ss_pred cCC-ceEEE---------ecCccc----HHHHHHHHHH-HhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCc
Q 017645 230 NEV-KTQIF---------YVPPHK----LLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGE 294 (368)
Q Consensus 230 ~~~-~tlVl---------yesp~r----l~~~l~~L~~-~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge 294 (368)
..+ +|+|| |+++++ +.++++.+.. ++++++++++++++|+++|++++++++++.+. + ...++
T Consensus 157 ~~~~~tlvl~d~~~~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~--~-~~~~~ 233 (265)
T 2z6r_A 157 ERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIRE--D-FGDPP 233 (265)
T ss_dssp HTTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSSSCEEEEEEHHHHTTC--C-CCSSC
T ss_pred hCCCceEEEEecccccccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHhhh--h-cCCCC
Confidence 555 99999 899884 4444444332 35568999999999999999999999998653 1 12578
Q ss_pred EEEEEeCCC
Q 017645 295 ITVLVEGKA 303 (368)
Q Consensus 295 ~vlvi~g~~ 303 (368)
+++||.|+.
T Consensus 234 ~~lii~g~~ 242 (265)
T 2z6r_A 234 HILIVPGKL 242 (265)
T ss_dssp EEEEECCSC
T ss_pred cEEEEECCC
Confidence 999999864
No 18
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=100.00 E-value=2e-34 Score=274.35 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=162.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC-----cHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCC
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG 153 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~-----~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~G 153 (368)
..|+||+||+|||||++||+||+++|++||+|+|++ ++ ..+.++.+. .++....+....++..+.+++.+++
T Consensus 11 ~~g~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~a~~- 87 (268)
T 1vhv_A 11 HMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEY-YTSKLLSSIEEMEEFF-GKRVVELERSDLEENSFRLIERAKS- 87 (268)
T ss_dssp --CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEEEC-SSCCCSSCHHHHHHHH-TSCCEEECHHHHTTTHHHHHHHHTT-
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhcCCEEEECC-chHhhhccHHHHHHHh-CCCccccchhHHHHHHHHHHHHhCC-
Confidence 458999999999999999999999999999999975 43 123333321 2332221111234456788888765
Q ss_pred CeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEE----ecCCCchhhHHHHHhhh
Q 017645 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVG----FLPKHARSRTERLMLSA 229 (368)
Q Consensus 154 k~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvG----flp~~~~~~~~~L~~l~ 229 (368)
++||+++ +|||+|||++.++++++.+.|++|++|||+||+++|++++|+||++|.+.. |+|... .....+.+.
T Consensus 88 ~~Va~L~-~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~~~~~~~--~~~~~~~l~ 164 (268)
T 1vhv_A 88 KSVVLLV-PGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQTP--VNVIKANRS 164 (268)
T ss_dssp SEEEEEE-SBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECSSCCSHH--HHHHHHHHH
T ss_pred CCEEEEe-CCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEecCCCch--HHHHHHHhc
Confidence 8999996 999999999999999999999999999999999999999999998754432 234322 222334566
Q ss_pred cCCceEEE------ecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcE-EEEEeCC
Q 017645 230 NEVKTQIF------YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI-TVLVEGK 302 (368)
Q Consensus 230 ~~~~tlVl------yesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~-vlvi~g~ 302 (368)
....|+|+ |++++++.+.+.++.+.++ ++++++++++|+++|++++++++++.+.. ....+ ++||.|+
T Consensus 165 ~~~~tlvl~d~~~~~~~~~~~~~~L~~l~~~~~-~~~v~v~~~l~~~~E~i~~~tl~el~~~~----~~~~~~~liI~~~ 239 (268)
T 1vhv_A 165 IDAHTLLFLDLHPEPMTIGHAVENLIAEDAQMK-DLYAVGIARAGSGEEVVKCDRLENLKKID----FGKPLHVMVVLAK 239 (268)
T ss_dssp TTCBEEEEECCSSSCCCHHHHHHHHHHHCGGGG-GSEEEEEESTTSSSCEEEEEEGGGGGGSC----CCSSCEEEEECCS
T ss_pred cCCCeEEEEcCchhhcCHHHHHHHHHHHHhcCC-CcEEEEEEcCCCCceEEEEEEHHHHHHhh----cCCCCeEEEEECC
Confidence 67889999 8999999988888777787 89999999999999999999999986531 12334 5666564
No 19
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=100.00 E-value=8.4e-34 Score=267.33 Aligned_cols=194 Identities=16% Similarity=0.199 Sum_probs=149.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcCCCCcEEEcCCC---------------
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIKTPLLSYHKF--------------- 137 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~--------~~LL~~~~i~~~~is~~~~--------------- 137 (368)
|+||+||+|||||++||+||+++|++||+|+|++++.+ ..+++.+..+++++.++..
T Consensus 3 g~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 82 (251)
T 2npn_A 3 RTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVRR 82 (251)
T ss_dssp EEEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHHHHHHHHHSTTCCEEEECC----------CHHHHH
T ss_pred cEEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhHHHHHHHHhCCCEEEEecCCCcccchhhhhhhhhh
Confidence 78999999999999999999999999999999987664 3466666336677776531
Q ss_pred ---cHHHHH-HHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCC---CCEEEEcCccHHHHHHHhcCCCCCcE-E
Q 017645 138 ---NESQRE-QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLATDEF-T 209 (368)
Q Consensus 138 ---ne~~~~-~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~g---i~V~vIPGiSA~~aA~a~sGlp~~~f-~ 209 (368)
+.++.. +.|.+.+++|++||+++ +|||+|||++.++++.+.+.| ++|++|||+||+++|++++|+|++++ .
T Consensus 83 ~~~~~~~~~~~~i~~~~~~g~~Vv~l~-~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~~ 161 (251)
T 2npn_A 83 WHAERAHLLASTIRERTPDDGAVAFLV-WGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIGE 161 (251)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCEEEEEE-SBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTTC
T ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEe-CCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCCC
Confidence 112223 35557777899999996 999999999999999999887 99999999999999999999999863 1
Q ss_pred EEEecCCCchhhHHHHH-hhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHH
Q 017645 210 FVGFLPKHARSRTERLM-LSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFS 287 (368)
Q Consensus 210 fvGflp~~~~~~~~~L~-~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~ 287 (368)
++.++|.+. ++ .+....+|+|+|.++++.... +. ++++++++++++|+++|++++|+++++.+.+.
T Consensus 162 ~~~~~~g~~------l~~~l~~~~~t~vvl~~~~~~~~~---l~---~~~~~v~v~~~l~~~~E~i~~~~l~el~~~~~ 228 (251)
T 2npn_A 162 AIHITTGRN------LPETSAKDRRNCVVMLDGKTAWQD---VA---TEHTYMWWGAFLGTEQQVLRKGYVHEIGAQVA 228 (251)
T ss_dssp CCEEEETTT------GGGSCTTGGGEEEEESCSSCTHHH---HC---CTTEEEEEEESTTSTTCEEEEEEHHHHHHHHH
T ss_pred eEEEEccch------hhHHHHhcCCcEEEEEcchhhHHH---hc---CCCCEEEEEEECCCCCeEEEEcCHHHHHHHHH
Confidence 122335432 12 233456788888888774322 22 35799999999999999999999999987654
No 20
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=100.00 E-value=4.9e-33 Score=268.29 Aligned_cols=211 Identities=19% Similarity=0.203 Sum_probs=163.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC---cH---HHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCC
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH---SG---KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~---~~---~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk 154 (368)
++||+||+| ||+++||+||+++|++||+|++++.++ +. .+++.+.. ++++.++.++.++..+.+++.++ |+
T Consensus 8 ~~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~i~~~~~-g~ 84 (294)
T 1wde_A 8 VTLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGE-ARVVEASRRDLEERSREIVSRAL-DA 84 (294)
T ss_dssp CEEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTS-SSEEECCHHHHHTSHHHHTCCSS-CC
T ss_pred eEEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccchHHHHHhccC-CeEEecChHHHHHHHHHHHHHhC-CC
Confidence 479999999 999999999999999999999986553 22 24555554 66777665555555677777777 99
Q ss_pred eEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcE--EE-EE-----ecCCCchhhHHHHH
Q 017645 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF--TF-VG-----FLPKHARSRTERLM 226 (368)
Q Consensus 155 ~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f--~f-vG-----flp~~~~~~~~~L~ 226 (368)
+||+++ +|||++|+++.++++.+.+.|++|++|||+||+++|++++|+||+++ .+ +. ++|.+ ..+.+.
T Consensus 85 ~Vv~L~-~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~---~~~~l~ 160 (294)
T 1wde_A 85 VVAVVT-AGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPIS---VARRIY 160 (294)
T ss_dssp EEEEEE-SBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHH---HHHHHH
T ss_pred CEEEEe-CCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCC---hHHHHH
Confidence 999996 99999999999999999999999999999999999999999999874 22 11 33332 223444
Q ss_pred h-hhcCCceEEEecCccc-----HHHHHHHHH---HH----------hCCCceeeeecccCCCccEEEEeehhhHHHHHH
Q 017645 227 L-SANEVKTQIFYVPPHK-----LLQFLEETS---LL----------FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFS 287 (368)
Q Consensus 227 ~-l~~~~~tlVlyesp~r-----l~~~l~~L~---~~----------~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~ 287 (368)
. +....+|+|||+.+++ +.++.+.|. +. +++++++++++++|+++|++++++++++.+.
T Consensus 161 ~~l~~~~~tlvl~~~~~~~~~m~~~~i~~~L~~l~~~l~~~~~~~G~~~~~~~v~v~~~lg~~~E~i~~~tl~el~~~-- 238 (294)
T 1wde_A 161 LNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTA-- 238 (294)
T ss_dssp HHHHHTCEEEEEECBCTTSCBCCHHHHHHHHHHHHHHHHHHHTSCCCGGGSCEEEEECCGGGCCEEEEESCHHHHHTC--
T ss_pred HHHhcCCCeEEEEecccccccccHHHHHHHHHHHHHhhhccccccCcCCCCCEEEEEEeCCCCCcEEEEeeHHHHhhc--
Confidence 4 4455789999998887 666666665 53 4568999999999999999999999998752
Q ss_pred hCCCCCcEEEEEe-CC
Q 017645 288 SHQPKGEITVLVE-GK 302 (368)
Q Consensus 288 ~~~~kge~vlvi~-g~ 302 (368)
+..+.+++||+ |.
T Consensus 239 --~~~~~~~~iiI~g~ 252 (294)
T 1wde_A 239 --DVEGGVYSIVIPAR 252 (294)
T ss_dssp --CCCCCCCEEEECSS
T ss_pred --ccCCCCEEEEEeCC
Confidence 23134455555 64
No 21
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.97 E-value=9.5e-32 Score=249.36 Aligned_cols=200 Identities=19% Similarity=0.171 Sum_probs=147.5
Q ss_pred CCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCe
Q 017645 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (368)
Q Consensus 76 ~~~~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ 155 (368)
-++..|+||+||+||| |++||+||+++|++||+|+| ++|. ..++..+ +..+...++.. .++..+.+. .+.+|++
T Consensus 17 ~~~~~g~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~-~~~~-l~~~~~~-~~~~~~~~~~~-~~~~~~~i~-~~~~g~~ 90 (221)
T 2bb3_A 17 LYFSGHMIWIVGSGTC-RGQTTERAKEIIERAEVIYG-SRRA-LELAGVV-DDSRARILRSF-KGDEIRRIM-EEGRERE 90 (221)
T ss_dssp ---CCSEEEEEECBSS-TTCCCHHHHHHHHHCSEEEE-CHHH-HHHTTCT-TCTTEEECSCC-SHHHHHHHH-HHHHHSC
T ss_pred cCCCCCEEEEEEeCCC-hhHhHHHHHHHHHhCCEEEE-CHHH-HHHhhhh-cCCceEeccch-HHHHHHHHH-HhcCCCc
Confidence 3445689999999999 99999999999999999999 5554 3344432 12222223322 244556665 5667899
Q ss_pred EEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceE
Q 017645 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQ 235 (368)
Q Consensus 156 ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tl 235 (368)
||+++ .|||++|++++.+.+. ..|++|++|||+||+++|++++|+||++|.|+++.++... ..++.+.....++
T Consensus 91 Vv~L~-~GDP~i~~~~~~l~~~--~~~i~veviPGiSS~~aa~a~~g~pl~~~~~vs~~~r~~~---~~l~~l~~~~~~v 164 (221)
T 2bb3_A 91 VAVIS-TGDPMVAGLGRVLREI--AEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCHAKDFD---AELTELLKYRHLL 164 (221)
T ss_dssp EEEEE-SBCTTTTTSHHHHHTS--CCSSEEEEECCCCHHHHHHHHHTCCGGGEEEEEC----CC---HHHHTHHHHCEEE
T ss_pred EEEEe-CCCCccccCHHHHHHh--cCCCCEEEECCHHHHHHHHHHhCCCceeEEEEeecCCCch---HHHHHHhcCCeEE
Confidence 99996 5999999999886554 3589999999999999999999999999999977654332 3455565555666
Q ss_pred EEecCcccHHHHHHHHHHHhCCCceeeeecccCCCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 236 IFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 236 Vlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLtk~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
++|..+++..+ +.+ +++++++++|+++|++++++++++ + ...++++++|.++
T Consensus 165 vl~~~~~~~~~----l~~-----~~v~v~~~lg~~~E~i~~~~l~el-~-----~~~~~~slii~~~ 216 (221)
T 2bb3_A 165 ILADSHFPLER----LGK-----RRVVLLENLCMEGERIREGNADSI-E-----LESDYTIIFVERE 216 (221)
T ss_dssp EEECTTCCCGG----GTT-----CEEEEEESTTSTTCEEEEEETTTC-C-----CCCSSEEEEECCC
T ss_pred EEECCCCCHHH----HhC-----CeeehhhhcCCCCcEEEEccHHHH-h-----hcCCCEEEEEEcC
Confidence 66766665532 211 899999999999999999999998 3 2368899999765
No 22
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.96 E-value=2.7e-28 Score=204.88 Aligned_cols=113 Identities=43% Similarity=0.744 Sum_probs=106.8
Q ss_pred cCccHHHHHHHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecccC
Q 017645 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREIT 268 (368)
Q Consensus 189 PGiSA~~aA~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~eLt 268 (368)
|||||+++|++.||+|.++|.|+||+|.+. .|++.|+.+++.+.|+||||+|||+.+++++|.+.++++++++|++|+|
T Consensus 1 PG~sA~~~Al~~sGlp~~~F~F~Gflp~~~-~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~~g~~~~v~v~relT 79 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKFCFEGFLPQKK-GRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREIS 79 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSEEEEESCCSST-THHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHHHCTTCEEEEEEESS
T ss_pred CchhHHHHHHHHcCCCCCcEEEEeeCCCCc-cHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHhcCCCCEEEeeeccC
Confidence 899999999999999999999999999887 5778899999999999999999999999999999998899999999999
Q ss_pred CCccEEEEeehhhHHHHHHhCCCCCcEEEEEeCC
Q 017645 269 KMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (368)
Q Consensus 269 k~~E~i~~gtl~el~~~~~~~~~kge~vlvi~g~ 302 (368)
|+||++++|+++++.+++.++.+|||+||||.|.
T Consensus 80 k~~E~~~rgtl~el~~~~~~~~~kGe~vivv~~~ 113 (115)
T 3ffy_A 80 KIHEETVRGTLSELIEHFTATDPRGEIVIVLAGI 113 (115)
T ss_dssp SSCEEEEEEEHHHHHHHHHHSCCCSSEEEEECCC
T ss_pred CCceEEEEeeHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 9999999999999999998888999999999875
No 23
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.95 E-value=1.7e-28 Score=206.24 Aligned_cols=113 Identities=48% Similarity=0.804 Sum_probs=105.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCC-CcEEEcCCCcHHHHHHHHHHHHhCCCeEE
Q 017645 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (368)
Q Consensus 79 ~~g~LyiVGtGpGn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~-~~~is~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (368)
++|+||+||+||||+++||+||+++|++||+|+++++++++++|+.+++. +++++++++++.+..+.+++.+++|++|+
T Consensus 4 ~~g~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~V~ 83 (117)
T 3hh1_A 4 HKGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYHSFNEERAVRQVIELLEEGSDVA 83 (117)
T ss_dssp CCCCEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEeccCCccHHHHHHHHHHHHHCCCeEE
Confidence 45899999999999999999999999999999999888888899988776 78889999999899999999999999999
Q ss_pred EEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCc
Q 017645 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (368)
Q Consensus 158 lvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGi 191 (368)
++||+|||++||++.++++++++.|++|++||||
T Consensus 84 ~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 84 LVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp EEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred EEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 9988999999999999999999999999999997
No 24
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=71.37 E-value=11 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=22.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 319 LRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 319 ~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
+..+..+|++.+++ |+.+|++++.||+.+-.
T Consensus 14 i~~~~~~g~s~~~I----A~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 14 LDVMKLLNVSLHEM----SRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHTTCCHHHH----HHHHTCCHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHH----HHHHCcCHHHHHHHHhh
Confidence 34455689986655 56679999999998643
No 25
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=70.04 E-value=4.5 Score=28.30 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=26.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 319 LRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 319 ~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
+..+++.|.+.+.++..+|+.+|++++.||++.
T Consensus 14 ~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 14 VLESYRNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 355566788756667889999999999999985
No 26
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=66.84 E-value=4.1 Score=29.37 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCcc
Q 017645 333 VKLVAQGTSVRRKTIYSLALRKFGKQI 359 (368)
Q Consensus 333 ~k~~a~~~~~~k~~vY~~~~~~~~~~~ 359 (368)
+..+++.||++|.+||+.+-.+.++.+
T Consensus 28 I~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 345778999999999998877766643
No 27
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=62.58 E-value=5.7 Score=32.88 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHH
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA 197 (368)
+.+.++.+.+|+-|.+++|-|+|.-. ...+... .+.++++|.|++-....
T Consensus 51 i~~~i~~~d~~~GVLiL~DmGSp~n~--a~~l~~~---~~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 51 LKQTVVKLNPVKGVLILSDMGSLTSF--GNILTEE---LGIRTKTVTMVSTPVVL 100 (130)
T ss_dssp HHHHHHTSCCTTCEEEEECSGGGGTH--HHHHHHH---HCCCEEEECSCCHHHHH
T ss_pred HHHHHHhhCCCCCEEEEEeCCCHHHH--HHHHHHh---cCCCEEEEeCCCHHHHH
Confidence 34444445567778888899998653 2333322 26789999999865543
No 28
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=61.69 E-value=26 Score=32.54 Aligned_cols=43 Identities=12% Similarity=-0.050 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHhc
Q 017645 313 DQLEKELRGLISAGHNLSMAVKLVAQGTS---VRRKTIYSLALRKF 355 (368)
Q Consensus 313 ~~~~~~~~~l~~~~~~~k~a~k~~a~~~~---~~k~~vY~~~~~~~ 355 (368)
.++...+..+..+|.+.+++++.+.+.|| ++++.+|+..-...
T Consensus 9 ~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~ 54 (345)
T 3hot_A 9 EQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFK 54 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence 44555666677899999999999999999 99999999875543
No 29
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=57.35 E-value=14 Score=36.90 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.+..+...|.+.+++++.+|+.+|++++.+|+++-.
T Consensus 40 ~v~~l~~~g~~~~~a~~~~a~~~gvS~~Tl~rW~~~ 75 (529)
T 4fcy_A 40 AADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQ 75 (529)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445677889999999999999999999999998644
No 30
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=56.14 E-value=9.6 Score=31.91 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHH
Q 017645 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (368)
Q Consensus 152 ~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA 197 (368)
+|+-|.++.|-|+|.-. +..+.. +.+.++++|.|++-....
T Consensus 62 ~g~GVLiL~DmGSp~n~--a~~l~~---~~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 62 LNNGILLLTDMGSLNSF--GNMLFE---ETGIRTKAITMTSTMIVL 102 (139)
T ss_dssp GTTCEEEEECSGGGGGH--HHHHHH---HHCCCEEEECSCCHHHHH
T ss_pred CCCCEEEEEeCCCHHHH--HHHHHH---hhCCCEEEEeCCCHHHHH
Confidence 57778888899998543 233322 226789999999866543
No 31
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=53.67 E-value=87 Score=27.23 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=42.0
Q ss_pred CCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEc
Q 017645 91 GNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (368)
Q Consensus 91 Gn~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvS 160 (368)
|++++-...|.+.=+.+|+|++-. -+..+|+.. .+.|++... .+..+..+.+...-+-+.+|++++
T Consensus 36 ~~l~~~v~~a~~~~~~~dVIISRG--gta~~lr~~-~~iPVV~I~-~s~~Dil~al~~a~~~~~kIavvg 101 (196)
T 2q5c_A 36 ASLTRASKIAFGLQDEVDAIISRG--ATSDYIKKS-VSIPSISIK-VTRFDTMRAVYNAKRFGNELALIA 101 (196)
T ss_dssp CCHHHHHHHHHHHTTTCSEEEEEH--HHHHHHHTT-CSSCEEEEC-CCHHHHHHHHHHHGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCeEEEECC--hHHHHHHHh-CCCCEEEEc-CCHhHHHHHHHHHHhhCCcEEEEe
Confidence 456666666666523699999942 345566643 457887664 234455666666555678999994
No 32
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=51.05 E-value=37 Score=22.65 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=22.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
.+..+...|++.+++ |+.+|++++.||+.+
T Consensus 23 ~i~~l~~~g~s~~eI----A~~lgis~~TV~~~l 52 (55)
T 2x48_A 23 VAHELAKMGYTVQQI----ANALGVSERKVRRYL 52 (55)
T ss_dssp HHHHHHHTTCCHHHH----HHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHH----HHHHCcCHHHHHHHH
Confidence 444556689987765 566799999999874
No 33
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=50.31 E-value=1e+02 Score=25.58 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=46.9
Q ss_pred CeEEEEecCCCCc----cchhHHHHHHHhhCCEEEEcCCCC----cHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhC
Q 017645 81 PGLYLVATPIGNL----EDITLRALRVLKSANVILSEDTRH----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (368)
Q Consensus 81 g~LyiVGtGpGn~----~dITlrAl~~L~~aDvI~~edtR~----~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~ 152 (368)
+++++|- |+|.- .++-..-.+.+..+|.|++.+.+. ...+++.++ .+...+. +.++..+.+.+.++.
T Consensus 64 ~riivvf-~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~--d~~eai~~~~~~~~~ 138 (163)
T 3mvn_A 64 QRILAVL-EPRSNTMKMGVHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISAD--DVDELVMRIVQQAKP 138 (163)
T ss_dssp SCEEEEE-CCC---------CHHHHHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEES--SHHHHHHHHHHHCCT
T ss_pred CcEEEEE-CCCCcchhhHHHHHHHHHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEEC--CHHHHHHHHHHhCCC
Confidence 4677663 55532 122233345677899888765431 123333332 2333332 345566777777776
Q ss_pred CCeEEEEccCCCCCCCCcHHHHHHHh
Q 017645 153 GEIVALISDAGTPGISDPGTELAKLC 178 (368)
Q Consensus 153 Gk~ValvSdaGdP~isdpg~~Lv~~~ 178 (368)
| +++++. |--.++.-+..|++.+
T Consensus 139 g-DvVLv~--Gsg~~~~~~~~l~~~l 161 (163)
T 3mvn_A 139 N-DHILIM--SNGAFGGIHQKLLTAL 161 (163)
T ss_dssp T-CEEEEE--CSSCGGGHHHHHHHHT
T ss_pred C-CEEEEE--CCCCHHHHHHHHHHHH
Confidence 6 555553 4444777777777665
No 34
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=50.16 E-value=41 Score=30.30 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=44.6
Q ss_pred CeEEEEecCCCCccchhHHHHHHHh--hCCEEEEcCCCCcHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEE
Q 017645 81 PGLYLVATPIGNLEDITLRALRVLK--SANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (368)
Q Consensus 81 g~LyiVGtGpGn~~dITlrAl~~L~--~aDvI~~edtR~~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (368)
..++++- |+.++-...|.+.+. .+|+|++-. -+..+|+.. .+.|++... .+..+....+...-+-+.+|++
T Consensus 39 ~~I~vi~---~~le~av~~a~~~~~~~~~dVIISRG--gta~~Lr~~-~~iPVV~I~-vs~~Dil~aL~~a~~~~~kIav 111 (225)
T 2pju_A 39 ANITPIQ---LGFEKAVTYIRKKLANERCDAIIAAG--SNGAYLKSR-LSVPVILIK-PSGYDVLQFLAKAGKLTSSIGV 111 (225)
T ss_dssp CEEEEEC---CCHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHHHTT-CSSCEEEEC-CCHHHHHHHHHHTTCTTSCEEE
T ss_pred ceEEEec---CcHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHHHhh-CCCCEEEec-CCHHHHHHHHHHHHhhCCcEEE
Confidence 3455554 456666666777665 399999943 345566643 457887664 2334555555554455678999
Q ss_pred Ec
Q 017645 159 IS 160 (368)
Q Consensus 159 vS 160 (368)
++
T Consensus 112 Vg 113 (225)
T 2pju_A 112 VT 113 (225)
T ss_dssp EE
T ss_pred Ee
Confidence 94
No 35
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=48.35 E-value=15 Score=28.10 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRKFGK 357 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~~ 357 (368)
.++.|.+.|-+.+ +..+|+.+|++|++|=+.+-+++.+
T Consensus 24 VLe~LkeaG~Plk--ageIae~~GvdKKeVdKaik~LKkE 61 (80)
T 2lnb_A 24 ILQVLTEAGSPVK--LAQLVKECQAPKRELNQVLYRMKKE 61 (80)
T ss_dssp HHHHHHHHTSCEE--HHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCC--HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4555666676665 4578899999999999888777654
No 36
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=46.62 E-value=64 Score=26.88 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=49.3
Q ss_pred HHHHHHH-hCCCeEEEEccCCCCCCCC---------cHHHHHHHhhhCCCCEEEE---------------cCccHHHHHH
Q 017645 144 QTVLNRL-KQGEIVALISDAGTPGISD---------PGTELAKLCVDEKIPVVPI---------------PGASAFVAAL 198 (368)
Q Consensus 144 ~~Ii~~l-~~Gk~ValvSdaGdP~isd---------pg~~Lv~~~~~~gi~V~vI---------------PGiSA~~aA~ 198 (368)
.++++.+ ++|..++++|. +.....+ +...+...+...|+.+..+ |-+-.+..++
T Consensus 48 ~e~L~~L~~~G~~l~i~Tn-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~v~~s~~~~~~~~~~~KP~p~~~~~~~ 126 (176)
T 2fpr_A 48 IPQLLKLQKAGYKLVMITN-QDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYL 126 (176)
T ss_dssp HHHHHHHHHTTEEEEEEEE-CTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCGGGCCSSSTTSCGGGGGGC
T ss_pred HHHHHHHHHCCCEEEEEEC-CccccccccchHhhhhhHHHHHHHHHHcCCCeeEEEEcCCCCcccccccCCCHHHHHHHH
Confidence 3345555 46789999973 3222111 2233444455667765333 3455677777
Q ss_pred HhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcc-cHHHHH
Q 017645 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPH-KLLQFL 248 (368)
Q Consensus 199 a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~-rl~~~l 248 (368)
...|+++++..|+|-- ...+....+.+-..|.+.... ...++.
T Consensus 127 ~~~gi~~~~~l~VGD~-------~~Di~~A~~aG~~~i~v~~~~~~~~~~~ 170 (176)
T 2fpr_A 127 AEQAMDRANSYVIGDR-------ATDIQLAENMGINGLRYDRETLNWPMIG 170 (176)
T ss_dssp ----CCGGGCEEEESS-------HHHHHHHHHHTSEEEECBTTTBCHHHHH
T ss_pred HHcCCCHHHEEEEcCC-------HHHHHHHHHcCCeEEEEcCCcccHHHHH
Confidence 7888888887787632 123333334444556665543 344433
No 37
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=46.21 E-value=1.2e+02 Score=24.85 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhh------CCC----CEEEE--------cCccHHHHHHHhcCCC
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD------EKI----PVVPI--------PGASAFVAALSASGLA 204 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~------~gi----~V~vI--------PGiSA~~aA~a~sGlp 204 (368)
+.++++.+++|..++++| .+. ...+-..+.. .|+ ...+. |-+..+..++...|++
T Consensus 94 ~~~~l~~l~~g~~~~i~t-~~~------~~~~~~~~~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 166 (211)
T 2i6x_A 94 KFDYIDSLRPDYRLFLLS-NTN------PYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMK 166 (211)
T ss_dssp HHHHHHHHTTTSEEEEEE-CCC------HHHHHHHTSTTSSTTCCCGGGGSSEEEEHHHHTCCTTSHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCeEEEEe-CCC------HHHHHHHHhhhccccccCHHHHcCeEEeecccCCCCCCHHHHHHHHHHhCCC
Confidence 456677777788899997 232 1122222222 232 33332 5566888899999999
Q ss_pred CCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHH
Q 017645 205 TDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252 (368)
Q Consensus 205 ~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~ 252 (368)
.++..++|-- ...+......+-..+.+..+..+.+.++.++
T Consensus 167 ~~~~~~igD~-------~~Di~~a~~aG~~~~~~~~~~~~~~~l~~~l 207 (211)
T 2i6x_A 167 PEETLFIDDG-------PANVATAERLGFHTYCPDNGENWIPAITRLL 207 (211)
T ss_dssp GGGEEEECSC-------HHHHHHHHHTTCEEECCCTTCCCHHHHHHHH
T ss_pred hHHeEEeCCC-------HHHHHHHHHcCCEEEEECCHHHHHHHHHHHH
Confidence 9998888531 2245555555666777777777777666544
No 38
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=45.97 E-value=34 Score=27.30 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=54.3
Q ss_pred ccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc-EEEcCCC------cHHHHHHHHHHHHhCCCeEEEEccCCCC
Q 017645 93 LEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHKF------NESQREQTVLNRLKQGEIVALISDAGTP 165 (368)
Q Consensus 93 ~~dITlrAl~~L~~aDvI~~edtR~~~~LL~~~~i~~~-~is~~~~------ne~~~~~~Ii~~l~~Gk~ValvSdaGdP 165 (368)
...||...+..+.+.++++. |.|.....-. --|..- -+++... ...+..+.+...+..++.|++.+..|.
T Consensus 17 ~~~is~~e~~~~l~~~~~lI-DvR~~~e~~~-ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~- 93 (129)
T 1tq1_A 17 PSSVSVTVAHDLLLAGHRYL-DVRTPEEFSQ-GHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG- 93 (129)
T ss_dssp CEEEEHHHHHHHHHHTCCEE-EESCHHHHHH-CCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS-
T ss_pred CcccCHHHHHHHhcCCCEEE-ECCCHHHHhc-CCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCc-
Confidence 34566655544433566666 7787544322 112221 2222110 011223334444556778888876653
Q ss_pred CCCCcHHHHHHHhhhCCCC-EEEEcCccHHHHHHHhcCCCCC
Q 017645 166 GISDPGTELAKLCVDEKIP-VVPIPGASAFVAALSASGLATD 206 (368)
Q Consensus 166 ~isdpg~~Lv~~~~~~gi~-V~vIPGiSA~~aA~a~sGlp~~ 206 (368)
........+.+.|++ |..+.|- ..++...|+|+.
T Consensus 94 ----rs~~aa~~L~~~G~~~v~~l~GG---~~~W~~~g~p~~ 128 (129)
T 1tq1_A 94 ----RSIKATTDLLHAGFTGVKDIVGG---YSAWAKNGLPTK 128 (129)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECC---HHHHHHHTCCCC
T ss_pred ----HHHHHHHHHHHcCCCCeEEeCCc---HHHHHhCCCCCC
Confidence 455666677777885 7777664 234445577753
No 39
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=44.33 E-value=72 Score=26.00 Aligned_cols=114 Identities=12% Similarity=0.017 Sum_probs=65.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHh---hCCEE-EEcCCCCcHHHHhhcC-CCCcE--EEcCCCcHHHHHHHHHHHHhC-C
Q 017645 82 GLYLVATPIGNLEDITLRALRVLK---SANVI-LSEDTRHSGKLLQYYN-IKTPL--LSYHKFNESQREQTVLNRLKQ-G 153 (368)
Q Consensus 82 ~LyiVGtGpGn~~dITlrAl~~L~---~aDvI-~~edtR~~~~LL~~~~-i~~~~--is~~~~ne~~~~~~Ii~~l~~-G 153 (368)
.-.++++..|+..++-.+-...+- .-++| ++.+ .....+++... .+..+ +|...........++++.+++ |
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 457889999999998887665543 35888 4443 23345555432 12333 343322223334555555543 3
Q ss_pred C-eEEEEccCCCCCCCCcHH-HHHHHhhhCCCCEEEEcCccHHHHH
Q 017645 154 E-IVALISDAGTPGISDPGT-ELAKLCVDEKIPVVPIPGASAFVAA 197 (368)
Q Consensus 154 k-~ValvSdaGdP~isdpg~-~Lv~~~~~~gi~V~vIPGiSA~~aA 197 (368)
. ++-++ ..|-|.+-..-+ ...+.+++.|++-..-||.+....+
T Consensus 83 ~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~ 127 (137)
T 1ccw_A 83 LEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGI 127 (137)
T ss_dssp CTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHH
T ss_pred CCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHH
Confidence 2 35455 378886644322 2345677889988888887765544
No 40
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=43.54 E-value=56 Score=24.32 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHHCC-CCHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 017645 310 PSEDQLEKELRGLISAG-HNLSMAVKLVAQGTSVRRKTIYSLALRKFG 356 (368)
Q Consensus 310 ~~~~~~~~~~~~l~~~~-~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~ 356 (368)
.+++++...++... .| +|...| |+.||+|+..++.++.....
T Consensus 14 Yte~~L~~Ai~aVr-~g~mS~~~A----ak~yGVP~sTL~~RVk~~~~ 56 (70)
T 2cob_A 14 YNSEILEEAISVVM-SGKMSVSKA----QSIYGIPHSTLEYKVKERLG 56 (70)
T ss_dssp CCHHHHHHHHHHHH-TTSSCHHHH----HHHHTCCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHH-cCCccHHHH----HHHhCCChHHHHHHHHhhcc
Confidence 44556666665554 56 787665 56789999999999877643
No 41
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=43.03 E-value=27 Score=26.34 Aligned_cols=50 Identities=6% Similarity=0.068 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHCCCCHHH--HHHHHHHHcCCCHHHHHHHHHHhcCC-ccccc
Q 017645 312 EDQLEKELRGLISAGHNLSM--AVKLVAQGTSVRRKTIYSLALRKFGK-QIEAA 362 (368)
Q Consensus 312 ~~~~~~~~~~l~~~~~~~k~--a~k~~a~~~~~~k~~vY~~~~~~~~~-~~~~~ 362 (368)
+-++.+.+...+. +++..+ .++.+|+++|++|+++=+.+-.+.++ ++...
T Consensus 10 ~~~~~~~v~~~i~-~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 10 DAEIFSLVKKEVL-SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp SHHHHHHHHHHHH-TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHH-hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 3445555555553 455544 68889999999999987765554333 44443
No 42
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=43.00 E-value=30 Score=22.19 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
.+..+...|.+.++ +|+.+|+++..||+.+
T Consensus 13 ~i~~l~~~g~s~~~----ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 13 QISRLLEKGHPRQQ----LAIIFGIGVSTLYRYF 42 (52)
T ss_dssp HHHHHHHTTCCHHH----HHHTTSCCHHHHHHHS
T ss_pred HHHHHHHcCCCHHH----HHHHHCCCHHHHHHHH
Confidence 34455667877654 5677899999999874
No 43
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=41.67 E-value=1.5e+02 Score=24.55 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEc-CccHHHH
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP-GASAFVA 196 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIP-GiSA~~a 196 (368)
.+..+++.+.+.+.++|.++- .|. -+-.+.++...+...|+++..++ +.+.+..
T Consensus 26 ~~~l~~~~~~i~~a~~I~i~G-~G~--S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~ 80 (187)
T 3sho_A 26 PEAIEAAVEAICRADHVIVVG-MGF--SAAVAVFLGHGLNSLGIRTTVLTEGGSTLTI 80 (187)
T ss_dssp HHHHHHHHHHHHHCSEEEEEC-CGG--GHHHHHHHHHHHHHTTCCEEEECCCTHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEe-cCc--hHHHHHHHHHHHHhcCCCEEEecCCchhHHH
Confidence 345677777777777888882 443 22345666677777899999998 4554433
No 44
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=39.57 E-value=44 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 321 ~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.+...|.+.++ +|+.+|+++..||++.-.
T Consensus 33 ~~~~~g~s~~~----iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 33 QRIHDGESKAS----VARDIGVPESTLRGWCKN 61 (87)
T ss_dssp HHHHHTCCHHH----HHHHHTCCHHHHHHHHHH
T ss_pred HHHHCCCCHHH----HHHHHCcCHHHHHHHHHH
Confidence 33356777554 567889999999998644
No 45
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.49 E-value=34 Score=29.45 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCcc
Q 017645 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (368)
Q Consensus 143 ~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiS 192 (368)
.....+.++.+++|+++ |.|++.-|..+|.....+. .+...||...
T Consensus 16 L~~Fk~~v~~~~kIvf~---Gs~GvCtPFaeL~~YaiR~-~~~~FiP~~d 61 (157)
T 2r47_A 16 LGVFREAVKDAERIGFA---GVPGVCTPFAQLFAYAVRD-KDNIFIPNTD 61 (157)
T ss_dssp HHHHHHHTTTCSEEEEE---ECTTTTHHHHHHHHHHTTT-SEEEEEETTC
T ss_pred HHHHHHHhcCCCeEEEE---CCCeeecCHHhhheeeeeC-CceEEcCCCC
Confidence 44555667778999998 9999999999999988776 5888899864
No 46
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=39.20 E-value=14 Score=28.38 Aligned_cols=27 Identities=0% Similarity=0.019 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCC
Q 017645 331 MAVKLVAQGTSVRRKTIYSLALRKFGK 357 (368)
Q Consensus 331 ~a~k~~a~~~~~~k~~vY~~~~~~~~~ 357 (368)
.-++.+|+..|++|..|++.+-.+..+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456677888899999999998777554
No 47
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=38.16 E-value=57 Score=34.58 Aligned_cols=89 Identities=8% Similarity=0.094 Sum_probs=55.7
Q ss_pred HHHHHhhCCEEEEcCCCCc-HHHHhhc---CCCCcEE-----EcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCc
Q 017645 100 ALRVLKSANVILSEDTRHS-GKLLQYY---NIKTPLL-----SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDP 170 (368)
Q Consensus 100 Al~~L~~aDvI~~edtR~~-~~LL~~~---~i~~~~i-----s~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdp 170 (368)
-.++|++-|+++... ..+ ..+++.+ ..+..+. .|.-.+.....+.+++++++|+.|-++-|.|-.....-
T Consensus 336 iF~~I~~~DiLl~~p-~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~ds~Iv~ALi~AA~rGv~V~vLvel~arfdee~ 414 (705)
T 2o8r_A 336 LMEGIRRKDYLIHVP-YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEEN 414 (705)
T ss_dssp HHHHHHHCCEEEEET-TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECCCSCC----
T ss_pred HHHHHhhCCeEeeCh-hHhHHHHHHHHHHhccCCCceEEEEEEEEEcCCHHHHHHHHHHHHCCCEEEEEEeCCCCcchhh
Confidence 578999999999853 443 3333322 2222222 23223346788999999999999987768774433222
Q ss_pred HHHHHHHhhhCCCCEEEEcCc
Q 017645 171 GTELAKLCVDEKIPVVPIPGA 191 (368)
Q Consensus 171 g~~Lv~~~~~~gi~V~vIPGi 191 (368)
.....+.+.++|++| +.|.
T Consensus 415 ni~wa~~Le~aGv~V--v~g~ 433 (705)
T 2o8r_A 415 NLRLSERMRRSGIRI--VYSM 433 (705)
T ss_dssp CHHHHHHHHHHTCEE--EECC
T ss_pred hHHHHHHHHHCCCEE--EEcc
Confidence 456668888888865 5553
No 48
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=37.62 E-value=92 Score=24.97 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEc
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIP 189 (368)
....+.+.+..++|-+|-++.| +.+.........++.+.+.|++|...+
T Consensus 40 ~~i~~aL~~a~~rGV~Vril~~-~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 40 PDIMKALVAAKKRGVDVKIVID-ERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE-STTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEe-CccccccccHHHHHHHHHCCCeEEEcC
Confidence 4566778888889999988853 444333344566777888999998875
No 49
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=36.07 E-value=1.7e+02 Score=27.78 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=37.6
Q ss_pred HHHHHHhh-CCEEEEcCCCCcHHHHhhcCCCCcEE-EcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCC
Q 017645 99 RALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGI 167 (368)
Q Consensus 99 rAl~~L~~-aDvI~~edtR~~~~LL~~~~i~~~~i-s~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~i 167 (368)
..++.|++ .|+.++=||+.+.-+-+.+...+.++ +..-.+..+..+.+.+ .|-.|+++...|+|--
T Consensus 95 pvI~~l~~~~~vpISIDT~~~~Va~aAl~aGa~iINDVsg~~~~~m~~v~a~---~g~~vVlMh~~G~P~t 162 (314)
T 3tr9_A 95 PVIDAIKKRFPQLISVDTSRPRVMREAVNTGADMINDQRALQLDDALTTVSA---LKTPVCLMHFPSETRK 162 (314)
T ss_dssp HHHHHHHHHCCSEEEEECSCHHHHHHHHHHTCCEEEETTTTCSTTHHHHHHH---HTCCEEEECCCCTTCC
T ss_pred HHHHHHHhhCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCchHHHHHHHH---hCCeEEEECCCCCCcc
Confidence 45566655 59999999988754433333345555 3332222233332222 2567888877898864
No 50
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=34.43 E-value=1.3e+02 Score=24.25 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=46.6
Q ss_pred CCEEEEcCCCCcHHHHh----hcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhC-
Q 017645 107 ANVILSEDTRHSGKLLQ----YYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE- 181 (368)
Q Consensus 107 aDvI~~edtR~~~~LL~----~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~- 181 (368)
-.+.+.+|....+.++. ..|.. .+.... |-.+..+.+. ...-+++++ |.-+|.+. |.++++++++.
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~-~v~~a~--~g~~al~~~~---~~~~Dlill-D~~MP~md--G~el~~~ir~~~ 83 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFN-NTQEAD--DGLTALPMLK---KGDFDFVVT-DWNMPGMQ--GIDLLKNIRADE 83 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCC-CEEEES--SHHHHHHHHH---HHCCSEEEE-ESCCSSSC--HHHHHHHHHHST
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCc-EEEEEC--CHHHHHHHHH---hCCCCEEEE-cCCCCCCC--HHHHHHHHHhCC
Confidence 45788888655554444 33322 122222 2222222222 123578888 99999986 68888888753
Q ss_pred ---CCCEEEEcCccHHHH
Q 017645 182 ---KIPVVPIPGASAFVA 196 (368)
Q Consensus 182 ---gi~V~vIPGiSA~~a 196 (368)
+++|.++-|-+....
T Consensus 84 ~~~~ipvI~lTa~~~~~~ 101 (134)
T 3to5_A 84 ELKHLPVLMITAEAKREQ 101 (134)
T ss_dssp TTTTCCEEEEESSCCHHH
T ss_pred CCCCCeEEEEECCCCHHH
Confidence 567777776654443
No 51
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=33.29 E-value=74 Score=25.01 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=23.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.+..+.++|++.+++| +.+|++++.||+.+-.
T Consensus 14 ~i~~~~~~G~s~~~ia----~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 14 QLDVMKLLNVSLHEMS----RKISRSRHCIRVYLKD 45 (141)
T ss_dssp HHHHHHHTTCCHHHHH----HHHTCCHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHH----HHHCcCHHHHHHHHHc
Confidence 4445667899887765 4569999999998654
No 52
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=33.25 E-value=24 Score=26.73 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhcCC
Q 017645 333 VKLVAQGTSVRRKTIYSLALRKFGK 357 (368)
Q Consensus 333 ~k~~a~~~~~~k~~vY~~~~~~~~~ 357 (368)
++.+|+.+|++|+.|.+.+-.+..+
T Consensus 30 ~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4456667799999999987777554
No 53
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}
Probab=33.19 E-value=3.4e+02 Score=26.69 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCCc---HHHHHHHhhh-CCCCEEEEcCccHHHHHHHhcCCCCCcEEEE---E
Q 017645 140 SQREQTVLNRLKQGEIVALISDAGTPGISDP---GTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV---G 212 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdp---g~~Lv~~~~~-~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv---G 212 (368)
....+.|...+.+|-+|+++|--|-|+- ++ -..+.+++.+ .|.+|..++-.---.+-.+...+...++..+ -
T Consensus 36 ~a~lpTI~~ll~~gakVvl~SHlGRPG~-~~~~SL~pva~~L~~lLg~~V~f~~d~~G~~a~~~i~~l~~G~VlLLEN~R 114 (410)
T 2cun_A 36 KAVLPTIRYLIESGAKVVIGTHQGKPYS-EDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLR 114 (410)
T ss_dssp HHTHHHHHHHHHTTCEEEEECCCSCTTC-TTCCCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGG
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCCC-CCCcCHHHHHHHHHHHHCCCCeeCCCcCCHHHHHHHhcCCCCeEEEEcccc
Confidence 3445677778888999999999999953 22 2233333333 2678888875533233333445555555443 2
Q ss_pred ecCCCchhhH-------HHHHhhhcCCceEEE--ecCcccHHHH
Q 017645 213 FLPKHARSRT-------ERLMLSANEVKTQIF--YVPPHKLLQF 247 (368)
Q Consensus 213 flp~~~~~~~-------~~L~~l~~~~~tlVl--yesp~rl~~~ 247 (368)
|.+....... ..-+.++...+..|- |.+.||....
T Consensus 115 F~~eE~~nd~~e~~a~~~fa~~LA~l~DvyVNDAFgtaHRahaS 158 (410)
T 2cun_A 115 FSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPS 158 (410)
T ss_dssp GBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCHH
T ss_pred cccccccCCchhhhhHHHHHHHHHhhCCEEEecccccccccCCc
Confidence 3343322111 344556666665442 4456775443
No 54
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=33.06 E-value=2e+02 Score=24.00 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhh------hCCCCEEEEcCccHHHHHH
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV------DEKIPVVPIPGASAFVAAL 198 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~------~~gi~V~vIPGiSA~~aA~ 198 (368)
+..+.+.+.+.++++|.++- .|... -.+.++...+. ..|+++..+++-.+...|+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G-~G~S~--~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~ 89 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCG-NGTSA--ANAQHFAASMINRFETERPSLPAIALNTDNVVLTAI 89 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-STHHH--HHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEe-Cchhh--HHHHHHHHHHhccccccCCCCceEeecCchHHHHHH
Confidence 56778888888888888882 45422 23445555565 5688888877655554444
No 55
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=31.42 E-value=1.5e+02 Score=25.97 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHH
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~a 196 (368)
...+.+...++.|++|...+ .+.+...+...++.+.+++.|..+.+-+|.+--..
T Consensus 62 ~~~~~~~~~l~~G~~vv~~~-~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~ 116 (236)
T 2dc1_A 62 AVKDYAEKILKAGIDLIVLS-TGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLD 116 (236)
T ss_dssp HHHHHHHHHHHTTCEEEESC-GGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHH
T ss_pred HHHHHHHHHHHCCCcEEEEC-cccCChHHHHHHHHHHHHhcCCeEEecCccccChH
Confidence 34455667788898876664 33333222236788888888888777777654443
No 56
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.10 E-value=99 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=18.6
Q ss_pred HHHCCCCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 322 LISAGHNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 322 l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
|...+...++| |+..|++|+.+|+++
T Consensus 50 L~~~~GN~s~A----A~~LGISR~TLyrKL 75 (81)
T 1umq_A 50 YEMCDRNVSET----ARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHTTSCHHHH----HHHHTSCHHHHHHHH
T ss_pred HHHhCCCHHHH----HHHhCCCHHHHHHHH
Confidence 44456666655 455699999999885
No 57
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=31.02 E-value=38 Score=24.04 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=16.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHh
Q 017645 334 KLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 334 k~~a~~~~~~k~~vY~~~~~~ 354 (368)
+.+++.+|++|..+|++.-+.
T Consensus 14 ~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 14 KFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp HHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCC
Confidence 445667799999999987543
No 58
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=30.13 E-value=94 Score=23.66 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=23.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
.+..+...|++.+++ |+.+|++++.||+++-.
T Consensus 25 ~i~~~~~~g~s~~~i----a~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 25 KIVEMAADGIRPCVI----SRQLRVSHGCVSKILNR 56 (128)
T ss_dssp HHHHHHHTTCCHHHH----HHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHH----HHHHCcCHHHHHHHHHH
Confidence 344455689987665 56679999999998654
No 59
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.89 E-value=2.5e+02 Score=23.53 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHh------hhCCCCEEEEcCccHHHHHH
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC------VDEKIPVVPIPGASAFVAAL 198 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~------~~~gi~V~vIPGiSA~~aA~ 198 (368)
+.++.+.+.+.++++|.++ =.|... -.+.++...+ ...|+++..+++.++...+.
T Consensus 33 ~~~~~i~~~i~~a~~I~i~-G~G~S~--~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 93 (199)
T 1x92_A 33 QASLVMVNALLNEGKILSC-GNGGSA--GDAQHFSSELLNRFERERPSLPAVALTTDSSTITSI 93 (199)
T ss_dssp HHHHHHHHHHHTTCCEEEE-CSTHHH--HHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEE-cCchhH--HHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHh
Confidence 4455566778888888887 245432 2345555566 45688888877665555544
No 60
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=29.85 E-value=1.2e+02 Score=21.02 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=19.2
Q ss_pred HHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 322 LISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 322 l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
|...+....+| |+..|++++.+|.++-+
T Consensus 28 L~~~~gn~~~a----A~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 28 LREYDYDLKRT----AEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHTTTCHHHH----HHHHTCCHHHHHHHHHH
T ss_pred HHHhCCCHHHH----HHHHCcCHHHHHHHHHH
Confidence 33455565555 45669999999998643
No 61
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=29.42 E-value=1.7e+02 Score=22.57 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHhCC-CeEEEEcc-CCCCCCCCcHHHHHHHhhhCCCCEEEEcCc
Q 017645 149 RLKQG-EIVALISD-AGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (368)
Q Consensus 149 ~l~~G-k~ValvSd-aGdP~isdpg~~Lv~~~~~~gi~V~vIPGi 191 (368)
.+..+ +.|++.++ .| .........+.+.|++|.++.|-
T Consensus 84 ~~~~~~~~ivvyC~~~G-----~rs~~a~~~L~~~G~~v~~l~GG 123 (134)
T 3g5j_A 84 ELALNYDNIVIYCARGG-----MRSGSIVNLLSSLGVNVYQLEGG 123 (134)
T ss_dssp HHHTTCSEEEEECSSSS-----HHHHHHHHHHHHTTCCCEEETTH
T ss_pred HhccCCCeEEEEECCCC-----hHHHHHHHHHHHcCCceEEEeCc
Confidence 34566 88888863 34 23456666777888888888773
No 62
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=29.00 E-value=58 Score=27.20 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCeEEEEccC--CCCCCCCcHHHHHHHhhhC----CCCEEEEcCccHHHH
Q 017645 141 QREQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVA 196 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSda--GdP~isdpg~~Lv~~~~~~----gi~V~vIPGiSA~~a 196 (368)
+++...++.+..|+.|.+++|- |+|+-. -.+.+.+. +.++++|.|++-...
T Consensus 46 ~~i~~~i~~~~~~~gvlvLtDl~GGSp~n~-----a~~~~~~~~~~~~~~v~vI~GvNLpml 102 (150)
T 3ipr_A 46 GQIKTAIENVQQGDGVLVMVDLLSASPYNQ-----AVLVINELEPALQKKIFVVSGTNLPMV 102 (150)
T ss_dssp HHHHHHHHHHCSSSCEEEEESSTTSHHHHH-----HHHHHTTSCHHHHTTEEEEESCCHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCCHHHH-----HHHHHHhhhhccCCCEEEEeCCCHHHH
Confidence 4455556666677778888787 777532 11222221 468999999985543
No 63
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=28.98 E-value=94 Score=26.34 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=48.0
Q ss_pred CCccchhHHHHHHHhhCCEEEEcCCCCc-HHHHh---hcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCC
Q 017645 91 GNLEDITLRALRVLKSANVILSEDTRHS-GKLLQ---YYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGT 164 (368)
Q Consensus 91 Gn~~dITlrAl~~L~~aDvI~~edtR~~-~~LL~---~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGd 164 (368)
+++..+..+-++.|++||+|++.-+... ....+ .+..++|++.+.+.........+++-...|..+-+. +..+
T Consensus 53 ~~~~~i~~~d~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~-~Y~~ 129 (152)
T 4fyk_A 53 GGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVW-DYAE 129 (152)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEE-ECCT
T ss_pred CCHHHHHHHHHHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEE-EecH
Confidence 4567788899999999999999754221 22222 233578888765433233445566666677778887 6776
No 64
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=28.25 E-value=48 Score=24.32 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=16.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHh
Q 017645 334 KLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 334 k~~a~~~~~~k~~vY~~~~~~ 354 (368)
+.+|+.+|++++.+|+++.+.
T Consensus 20 ~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 20 EEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp HHHHHHTCSCHHHHHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHcC
Confidence 445677799999999998653
No 65
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=27.58 E-value=2e+02 Score=21.66 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=47.3
Q ss_pred cchhHHHHH-HHhhCCEEEEcCCCCcHHHHhhcCCCCc-EEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcH
Q 017645 94 EDITLRALR-VLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPG 171 (368)
Q Consensus 94 ~dITlrAl~-~L~~aDvI~~edtR~~~~LL~~~~i~~~-~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg 171 (368)
..||...+. .+++-++++. |.|.....-.. .|..- -+++. + ....+..+..++.|++.+..|. ..
T Consensus 5 ~~i~~~~l~~~~~~~~~~li-DvR~~~e~~~g-hIpgA~~ip~~-----~-l~~~~~~l~~~~~ivvyc~~g~-----rs 71 (108)
T 1gmx_A 5 ECINVADAHQKLQEKEAVLV-DIRDPQSFAMG-HAVQAFHLTND-----T-LGAFMRDNDFDTPVMVMCYHGN-----SS 71 (108)
T ss_dssp EEECHHHHHHHHHTTCCEEE-ECSCHHHHHHC-EETTCEECCHH-----H-HHHHHHHSCTTSCEEEECSSSS-----HH
T ss_pred cccCHHHHHHHHhCCCCEEE-EcCCHHHHHhC-CCccCEeCCHH-----H-HHHHHHhcCCCCCEEEEcCCCc-----hH
Confidence 345655544 4555567777 78875443221 12211 12221 1 2233344667788999876553 45
Q ss_pred HHHHHHhhhCCCC-EEEEcCc
Q 017645 172 TELAKLCVDEKIP-VVPIPGA 191 (368)
Q Consensus 172 ~~Lv~~~~~~gi~-V~vIPGi 191 (368)
......+.+.|++ |..+.|-
T Consensus 72 ~~a~~~L~~~G~~~v~~l~GG 92 (108)
T 1gmx_A 72 KGAAQYLLQQGYDVVYSIDGG 92 (108)
T ss_dssp HHHHHHHHHHTCSSEEEETTH
T ss_pred HHHHHHHHHcCCceEEEecCC
Confidence 6666777777884 7777664
No 66
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=27.33 E-value=1.1e+02 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 017645 317 KELRGLISA-GHNLSMAVKLVAQGTSVRRKTIYSLALRKFG 356 (368)
Q Consensus 317 ~~~~~l~~~-~~~~k~a~k~~a~~~~~~k~~vY~~~~~~~~ 356 (368)
..+..++.. |.+.+ .+|+.+|++++.||++.-....
T Consensus 13 ~~v~~~~~~~g~s~~----~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 13 DAVALYENSDGASLQ----QIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp HHHHHHTTGGGSCHH----HHHHHHTSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCChHH----HHHHHHCcCHHHHHHHHHHHhh
Confidence 344444444 77755 5567789999999999755543
No 67
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=27.01 E-value=71 Score=24.02 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
|..+|.++.+|+.+|++++++...+
T Consensus 1 mtk~eli~~ia~~~~ls~~~~~~~l 25 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLIL 25 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5678888999999999999888764
No 68
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.76 E-value=27 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=18.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhcCC
Q 017645 333 VKLVAQGTSVRRKTIYSLALRKFGK 357 (368)
Q Consensus 333 ~k~~a~~~~~~k~~vY~~~~~~~~~ 357 (368)
++.+|+..|++|+.|.+.+-.+.++
T Consensus 34 ~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 34 AHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4556667799999999987666544
No 69
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=26.54 E-value=44 Score=23.88 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=20.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhcCCcc
Q 017645 334 KLVAQGTSVRRKTIYSLALRKFGKQI 359 (368)
Q Consensus 334 k~~a~~~~~~k~~vY~~~~~~~~~~~ 359 (368)
..+|+.+|++|..|++.+-.+..+.+
T Consensus 29 ~eLA~~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 29 FQLVKKCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 45778889999999999877766544
No 70
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=25.79 E-value=80 Score=23.75 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLAL 352 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~~ 352 (368)
|..+|.++.+|+.+|++++++...+-
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~ 26 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALE 26 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46788889999999999998887643
No 71
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=24.69 E-value=67 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEccC--CCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHH
Q 017645 140 SQREQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSda--GdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA 197 (368)
.++..+.++.+.+|+.|.+++|- |+|+= . ...+.+ +.++++|.|++-....
T Consensus 64 ~~~~~~~i~~~~~~~gVLiLtDl~GGSP~n-----~-a~~~~~-~~~v~vItGvNLpMll 116 (159)
T 3mtq_A 64 TQQVEALVARFPAQDELIVITDIFAGSVNN-----E-FVRFLS-RPHFHLLSGLNLPLII 116 (159)
T ss_dssp HHHHHHHHHTSCTTSEEEEEESCTTSHHHH-----H-HHGGGG-STTEEEEECCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCCHHH-----H-HHHHhc-CCCeEEEeCCCHHHHH
Confidence 44455566666667888888887 77742 2 222222 4689999999865544
No 72
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.66 E-value=94 Score=23.42 Aligned_cols=27 Identities=15% Similarity=-0.091 Sum_probs=18.9
Q ss_pred HHHCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Q 017645 322 LISAGHNLSMAVKLVAQGTSVRRKTIYSLAL 352 (368)
Q Consensus 322 l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~ 352 (368)
|...+...++| |+..|++|+.+|+++-
T Consensus 60 L~~~~gn~~~a----A~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 60 LRHTQGHKQEA----ARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHTTTCTTHH----HHHTTCCHHHHHHHHH
T ss_pred HHHhCCCHHHH----HHHHCcCHHHHHHHHH
Confidence 33445565554 5667999999998854
No 73
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=24.07 E-value=2.6e+02 Score=22.02 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=55.0
Q ss_pred cchhHHHH-HHHh-hCCEEEEcCCCCcHHHHh-hcC------CCCcEEEcCCCcHHHHHHHHHHHH--hCCCeEEEEccC
Q 017645 94 EDITLRAL-RVLK-SANVILSEDTRHSGKLLQ-YYN------IKTPLLSYHKFNESQREQTVLNRL--KQGEIVALISDA 162 (368)
Q Consensus 94 ~dITlrAl-~~L~-~aDvI~~edtR~~~~LL~-~~~------i~~~~is~~~~ne~~~~~~Ii~~l--~~Gk~ValvSda 162 (368)
..||..-+ +.++ +-+.++. |-|.....-. +.. ....-+++.+.......+++.+.+ ..++.|++.|..
T Consensus 5 ~~is~~e~~~~l~~~~~~~li-DVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~s 83 (134)
T 1vee_A 5 SSGSAKNAYTKLGTDDNAQLL-DIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKF 83 (134)
T ss_dssp CBCCHHHHHHHHHHCTTEEEE-ECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSS
T ss_pred CccCHHHHHHHHHhCCCeEEE-EcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCC
Confidence 44666544 4555 3578887 8887655422 111 112223443321122223332222 446788888876
Q ss_pred CCCCCCCcHHHHHHHhhhCCCC-EEEEcCccHHHHHHHhcCCCC
Q 017645 163 GTPGISDPGTELAKLCVDEKIP-VVPIPGASAFVAALSASGLAT 205 (368)
Q Consensus 163 GdP~isdpg~~Lv~~~~~~gi~-V~vIPGiSA~~aA~a~sGlp~ 205 (368)
|. +.......+.+.|+. |..+.|--....+....|+|+
T Consensus 84 G~-----RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~ 122 (134)
T 1vee_A 84 DG-----NSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPW 122 (134)
T ss_dssp ST-----THHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCE
T ss_pred CC-----cHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCC
Confidence 74 445566667778985 766665421113455667765
No 74
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=23.96 E-value=2.9e+02 Score=22.30 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=56.3
Q ss_pred HHHHHHHHh-CCCeEEEEccCCCCCCCCc-H---HHHHHHhhhCCCCEEE--------EcCccHHHHHHHhcCCCCCcEE
Q 017645 143 EQTVLNRLK-QGEIVALISDAGTPGISDP-G---TELAKLCVDEKIPVVP--------IPGASAFVAALSASGLATDEFT 209 (368)
Q Consensus 143 ~~~Ii~~l~-~Gk~ValvSdaGdP~isdp-g---~~Lv~~~~~~gi~V~v--------IPGiSA~~aA~a~sGlp~~~f~ 209 (368)
+.++++.++ +|..++++| .+..-.... . ..+-..+ ...+ -|.+-.+..++...|++.++..
T Consensus 96 ~~~~l~~l~~~g~~~~i~t-~~~~~~~~~~~~~~~~l~~~f-----~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (206)
T 2b0c_A 96 VIAIMHKLREQGHRVVVLS-NTNRLHTTFWPEEYPEIRDAA-----DHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTV 169 (206)
T ss_dssp HHHHHHHHHHTTCEEEEEE-CCCCCTTSCCGGGCHHHHHHC-----SEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHCCCeEEEEE-CCChHHHHHHHHhccChhhhe-----eeEEEecccCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 444555555 788999997 344333221 1 1122221 2222 2455578899999999999988
Q ss_pred EEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHH
Q 017645 210 FVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249 (368)
Q Consensus 210 fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~ 249 (368)
++|-- ...+......+-..+.+..+..+.+.++
T Consensus 170 ~vgD~-------~~Di~~a~~aG~~~~~~~~~~~~~~~l~ 202 (206)
T 2b0c_A 170 FFDDN-------ADNIEGANQLGITSILVKDKTTIPDYFA 202 (206)
T ss_dssp EEESC-------HHHHHHHHTTTCEEEECCSTTHHHHHHH
T ss_pred EeCCC-------HHHHHHHHHcCCeEEEecCCchHHHHHH
Confidence 88632 2245555566667777777776665543
No 75
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=23.88 E-value=1.9e+02 Score=22.25 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q 017645 316 EKELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALR 353 (368)
Q Consensus 316 ~~~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~ 353 (368)
-..+-++++...+..++++.+++.|+.++..++.-+.+
T Consensus 45 a~~Iw~l~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~~ 82 (95)
T 3g2b_A 45 ALVVAQRYDGTQSLAQIAQTLAAEFDADASEIETDVIE 82 (95)
T ss_dssp HHHHHHHCCSSSCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33455677777899999999999999998777766544
No 76
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.81 E-value=1.3e+02 Score=24.08 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=23.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 318 ELRGLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 318 ~~~~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.+..+...|.+.+++ |+.+|++++.||+++-..
T Consensus 40 ~iv~~~~~G~s~~~i----A~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 40 RIVELAHQGVRPCDI----SRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp HHHHHHHTTCCHHHH----HHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHH----HHHHCcCHHHHHHHHHHH
Confidence 344455679887765 556799999999987543
No 77
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=23.58 E-value=1.9e+02 Score=26.07 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCC
Q 017645 140 SQREQTVLNRLKQGEIVALISDAG 163 (368)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~ValvSdaG 163 (368)
.+.++.+.+.+.+.++|+++.+.+
T Consensus 127 ~~~l~l~~~l~P~~k~vgvi~~~~ 150 (302)
T 3lkv_A 127 EQHVELIKEILPNVKSIGVVYNPG 150 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECTT
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCC
Confidence 455666666666778999885443
No 78
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=22.49 E-value=1.2e+02 Score=29.24 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=56.5
Q ss_pred CeEEEEecCCC------------CccchhHHHHHHHhhC--CEEE------EcCCCCcHHHHhhcCCCCcEEE-cC-CCc
Q 017645 81 PGLYLVATPIG------------NLEDITLRALRVLKSA--NVIL------SEDTRHSGKLLQYYNIKTPLLS-YH-KFN 138 (368)
Q Consensus 81 g~LyiVGtGpG------------n~~dITlrAl~~L~~a--DvI~------~edtR~~~~LL~~~~i~~~~is-~~-~~n 138 (368)
+.+.+.|+++- |++.+-.||++.|++. |+++ ||-|-| -|.|+ +. -+ -.|
T Consensus 84 ~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvcLc~YT~H-----GHcGi----l~~~g~V~N 154 (342)
T 1h7n_A 84 RSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSH-----GHCGV----LYDDGTINR 154 (342)
T ss_dssp CEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTT-----CCSSC----BCTTSSBCH
T ss_pred CEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCC-----CceeE----ECCCCcCcc
Confidence 46777788664 8999999999999974 4444 433322 12232 21 01 123
Q ss_pred H---HHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCC
Q 017645 139 E---SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI 183 (368)
Q Consensus 139 e---~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi 183 (368)
+ +...+.-+.+++.|-+++-=|| ++-++-..+-+.+.++|+
T Consensus 155 D~Tl~~Lak~Als~A~AGAdiVAPSd----MMDGrV~aIR~aLd~~G~ 198 (342)
T 1h7n_A 155 ERSVSRLAAVAVNYAKAGAHCVAPSD----MIDGRIRDIKRGLINANL 198 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECC----CCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCeeeccc----ccccHHHHHHHHHHHCCC
Confidence 3 2334556667788999888875 344566777777888887
No 79
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=22.43 E-value=1.1e+02 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 017645 332 AVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 332 a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
..+.+|+..|.+|+++-+.++..
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~~ 38 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALEN 38 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHH
Confidence 34556777788888888777653
No 80
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=22.36 E-value=84 Score=30.22 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=46.3
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHh-hCCEEEEcCCCC--cHHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhCCCeE
Q 017645 80 EPGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRH--SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIV 156 (368)
Q Consensus 80 ~g~LyiVGtGpGn~~dITlrAl~~L~-~aDvI~~edtR~--~~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~Gk~V 156 (368)
+-++-|||+|.|- .=++|+..+. .++++..-|... ++.+-+.|++. . |.+.. + + .++-++
T Consensus 7 ~~rv~VvG~G~g~---~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~--~--~~~~~--~----l----~~~~D~ 69 (372)
T 4gmf_A 7 KQRVLIVGAKFGE---MYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIP--L--YTSPE--Q----I----TGMPDI 69 (372)
T ss_dssp CEEEEEECSTTTH---HHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCC--E--ESSGG--G----C----CSCCSE
T ss_pred CCEEEEEehHHHH---HHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCC--E--ECCHH--H----H----hcCCCE
Confidence 3468899998762 4445554443 356765545322 34555667653 2 22211 1 1 123455
Q ss_pred EEEccCCCCCCCCcHHHHHHHhhhCCCCEEE
Q 017645 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVP 187 (368)
Q Consensus 157 alvSdaGdP~isdpg~~Lv~~~~~~gi~V~v 187 (368)
++|. .-++.-.+.+++++.++.++|..|-+
T Consensus 70 v~i~-~p~~~h~~~~~~~a~~al~aGkhVl~ 99 (372)
T 4gmf_A 70 ACIV-VRSTVAGGAGTQLARHFLARGVHVIQ 99 (372)
T ss_dssp EEEC-CC--CTTSHHHHHHHHHHHTTCEEEE
T ss_pred EEEE-CCCcccchhHHHHHHHHHHcCCcEEE
Confidence 5552 34444455566666666666666644
No 81
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=22.06 E-value=90 Score=23.72 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
|..+|.++.+|+.+|++++++...+
T Consensus 1 M~k~eli~~ia~~~~ls~~~~~~~l 25 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVL 25 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567888888989999998887664
No 82
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.03 E-value=84 Score=21.09 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=21.5
Q ss_pred HHHHCCCCHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 321 GLISAGHNLSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 321 ~l~~~~~~~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
.++..|++.+++| +.+|++.+.|++.....
T Consensus 8 ~l~~~g~s~~eIA----~~l~is~~tV~~~~~~~ 37 (61)
T 2jpc_A 8 KLIDEGYTNHGIS----EKLHISIKTVETHRMNM 37 (61)
T ss_dssp HHHHTSCCSHHHH----HHTCSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHH----HHhCCCHHHHHHHHHHH
Confidence 3456799987654 55699999998775443
No 83
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=21.86 E-value=3.5e+02 Score=24.97 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEE-EcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCC
Q 017645 98 LRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVALISDAGTPG 166 (368)
Q Consensus 98 lrAl~~L~~a-DvI~~edtR~~~~LL~~~~i~~~~i-s~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~ 166 (368)
...++.|++. |+.++-||+.+.-+-..+...+.++ +..-.+..+..+.+.+ .|-.|+++.-.|+|-
T Consensus 79 ~pvi~~l~~~~~~piSIDT~~~~va~aAl~aGa~iINdvsg~~d~~~~~~~a~---~~~~vVlmh~~G~p~ 146 (282)
T 1aj0_A 79 IPVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAE---TGLPVCLMHMQGNPK 146 (282)
T ss_dssp HHHHHHHHHHCCCEEEEECCCHHHHHHHHHTTCCEEEETTTTCSTTHHHHHHH---HTCCEEEECCSSCTT
T ss_pred HHHHHHHHhhcCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH---hCCeEEEEccCCCCc
Confidence 3455566543 9888989988654444443456665 2222233333333322 255677775567775
No 84
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=21.82 E-value=1.4e+02 Score=22.72 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHh
Q 017645 329 LSMAVKLVAQGTSVRRKTIYSLALRK 354 (368)
Q Consensus 329 ~k~a~k~~a~~~~~~k~~vY~~~~~~ 354 (368)
....+..+|+.+|++.+.||++.-..
T Consensus 29 ~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 29 QWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 34577889999999999999997653
No 85
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=21.75 E-value=70 Score=24.16 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
|..+|.++.+|+.+|++++++...+
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l 25 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRAL 25 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567888888888889988887664
No 86
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=21.67 E-value=1.4e+02 Score=22.31 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=53.4
Q ss_pred hhHHHHHH-H-hhCCEEEEcCCCCcHHHHhhcCCCC-cEEEcCCCcHHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHH
Q 017645 96 ITLRALRV-L-KSANVILSEDTRHSGKLLQYYNIKT-PLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGT 172 (368)
Q Consensus 96 ITlrAl~~-L-~~aDvI~~edtR~~~~LL~~~~i~~-~~is~~~~ne~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~ 172 (368)
||..-+.. | .+-++++. |.|.....-. -.|.. --+++.+.. ..+..+..++.|++.+..| ....
T Consensus 4 is~~el~~~l~~~~~~~li-DvR~~~e~~~-ghIpgA~~ip~~~l~------~~~~~l~~~~~iv~yC~~g-----~rs~ 70 (103)
T 3eme_A 4 ITTDELKNKLLESKPVQIV-DVRTDEETAM-GYIPNAKLIPMDTIP------DNLNSFNKNEIYYIVCAGG-----VRSA 70 (103)
T ss_dssp ECHHHHHHGGGSSSCCEEE-ECSCHHHHTT-CBCTTCEECCGGGGG------GCGGGCCTTSEEEEECSSS-----SHHH
T ss_pred cCHHHHHHHHhcCCCCEEE-ECCCHHHHhc-CcCCCCEEcCHHHHH------HHHHhCCCCCeEEEECCCC-----hHHH
Confidence 45544443 4 24567777 7777543321 11222 123333221 1122345678898887555 2456
Q ss_pred HHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCC
Q 017645 173 ELAKLCVDEKIPVVPIPGASAFVAALSASGLATD 206 (368)
Q Consensus 173 ~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~ 206 (368)
.....+.+.|++|..+.|- ..+....|+|..
T Consensus 71 ~a~~~L~~~G~~v~~l~GG---~~~W~~~g~p~~ 101 (103)
T 3eme_A 71 KVVEYLEANGIDAVNVEGG---MHAWGDEGLEIK 101 (103)
T ss_dssp HHHHHHHTTTCEEEEETTH---HHHHCSSSCBCC
T ss_pred HHHHHHHHCCCCeEEeCCC---HHHHHHCCCcCC
Confidence 6777788889988888873 345666777654
No 87
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=21.56 E-value=5.3e+02 Score=24.56 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=71.7
Q ss_pred HHHHhhcCCCCcEEEcCCCcHHHHHHHHHHHHhC-CCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccHHHHH
Q 017645 119 GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (368)
Q Consensus 119 ~~LL~~~~i~~~~is~~~~ne~~~~~~Ii~~l~~-Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA 197 (368)
.++.+.+ ..|.+.++...-.+..+.+.+.+.+ +-++.++..+ +| ...+++.+.+.|..+.+ -...=+..+
T Consensus 25 ~~l~~~~--~tP~~vidl~~i~~N~~~l~~~~~~~~~~l~~avKa-n~-----~~~v~~~l~~~G~g~~v-as~~E~~~~ 95 (425)
T 2qgh_A 25 EELFQTH--KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKA-NS-----NLSILSLLAHLESGADC-VSIGEIQRA 95 (425)
T ss_dssp HHHHHHC--CSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGG-CC-----CHHHHHHHHHTTCEEEE-SSHHHHHHH
T ss_pred HHHHHhh--CCCEEEEEHHHHHHHHHHHHHhcCcCCCEEEEEecc-CC-----CHHHHHHHHHcCCeEEE-eCHHHHHHH
Confidence 3455555 3566666544444555666555543 3367677543 55 35677888888885554 555555555
Q ss_pred HHhcCCCCCcEEEEEecCCCchhhHHHHHhhhcCCceEEEecCcccHHHHHHHHHHHhCCCceeeeecc
Q 017645 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIARE 266 (368)
Q Consensus 198 ~a~sGlp~~~f~fvGflp~~~~~~~~~L~~l~~~~~tlVlyesp~rl~~~l~~L~~~~g~~~~v~v~~e 266 (368)
.. .|++...+.|.| |.+. ...++.+.+.+-..+..++...+..+-+...+ .+...+|.+==+
T Consensus 96 ~~-~G~~~~~i~~~g--~~k~---~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~-~~~~~~v~lrvn 157 (425)
T 2qgh_A 96 LK-AGIKPYRIVFSG--VGKS---AFEIEQALKLNILFLNVESFMELKTIETIAQS-LGIKARISIRIN 157 (425)
T ss_dssp HH-TTCCGGGEEECC--TTCC---HHHHHHHHHTTCSEEEECSHHHHHHHHHHHHH-HTCCEEEEEEBC
T ss_pred HH-cCCChhHEEEcC--CCCC---HHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHh-cCCCceEEEEEe
Confidence 44 488877777754 3333 23455555554444566776666554433222 333334544333
No 88
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=21.29 E-value=33 Score=31.29 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=61.9
Q ss_pred EEecCCCCccchhHHHHHHH---hhCCEEEEcCCCCcHHHHhhcCCCC------cEE--EcCCCcH-------------H
Q 017645 85 LVATPIGNLEDITLRALRVL---KSANVILSEDTRHSGKLLQYYNIKT------PLL--SYHKFNE-------------S 140 (368)
Q Consensus 85 iVGtGpGn~~dITlrAl~~L---~~aDvI~~edtR~~~~LL~~~~i~~------~~i--s~~~~ne-------------~ 140 (368)
+||+|-|.--..-.+++-.. ..-++...+.+..+..++..+++.- +.+ .+.-.+| .
T Consensus 24 vvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~iD~~iDGADEvd~~l~lIKGGGga 103 (228)
T 4gmk_A 24 IVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAA 103 (228)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHTTCCBCCGGGSSCEEEEEECCSEECTTSCEECCTTSC
T ss_pred EEEECchHHHHHHHHHHHHHHhhcCCcEEEEeCcHHHHHHHHHcCCceeChHHCCccceEeccHHHhhhchhhhhcchHH
Confidence 67777776655666655332 2357777765556677777777631 111 1111111 2
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccH-HHHHHHhcCC
Q 017645 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA-FVAALSASGL 203 (368)
Q Consensus 141 ~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA-~~aA~a~sGl 203 (368)
-..++|+.... .+-|+++ |. ..++..+.+..++|||+|-..+ +...+...|.
T Consensus 104 l~rEKivA~~a-~~fI~Ia-D~---------sK~v~~LG~fplPVEVip~a~~~v~~~l~~lG~ 156 (228)
T 4gmk_A 104 LLYEKIVATKS-NKNMWIV-DE---------SKMVDDLGQFPLPVEVIPYGSGTVFKRFEEKGL 156 (228)
T ss_dssp HHHHHHHHHHE-EEEEEEE-EG---------GGBCSSSCSSCEEEEECSTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-hheEEEe-cc---------ccccCccCCeeEEEEEehhhHHHHHHHHHHcCC
Confidence 23466776654 3566666 52 3344555555789999998754 4456666664
No 89
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=20.94 E-value=2e+02 Score=26.88 Aligned_cols=93 Identities=9% Similarity=0.094 Sum_probs=47.9
Q ss_pred HHHhh-CCEEEEcCCCCcHHHHhhcCCCCcEE-EcCCCc-HHHHHHHHHHHHhCCCeEEEEccCCCCCCCCcHHHHHHHh
Q 017645 102 RVLKS-ANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFN-ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC 178 (368)
Q Consensus 102 ~~L~~-aDvI~~edtR~~~~LL~~~~i~~~~i-s~~~~n-e~~~~~~Ii~~l~~Gk~ValvSdaGdP~isdpg~~Lv~~~ 178 (368)
+.|++ .|+.++-||..+.-+-..+...+.++ +....+ +.+..+.+. +.|-.|+++...|+|-..|......+.+
T Consensus 108 ~~l~~~~~vpiSIDT~~~~V~~aAl~aGa~iINdvsg~~~d~~m~~~aa---~~g~~vVlmh~~G~p~y~d~v~ev~~~l 184 (297)
T 1tx2_A 108 QAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAA---HYDVPIILMHNRDNMNYRNLMADMIADL 184 (297)
T ss_dssp HHHHHHSCSCEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHH---HHTCCEEEECCCSCCCCSSHHHHHHHHH
T ss_pred HHHHhcCCceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH---HhCCcEEEEeCCCCCCcchHHHHHHHHH
Confidence 55554 48888889987644333333356665 232222 233333222 2356677776678998333333333433
Q ss_pred hhCCCCEEEEcCccHHHHHHHhcCCCCCcEEE
Q 017645 179 VDEKIPVVPIPGASAFVAALSASGLATDEFTF 210 (368)
Q Consensus 179 ~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~f 210 (368)
.+ ....+...|++.++..+
T Consensus 185 ~~-------------~i~~a~~~GI~~~~Iil 203 (297)
T 1tx2_A 185 YD-------------SIKIAKDAGVRDENIIL 203 (297)
T ss_dssp HH-------------HHHHHHHTTCCGGGEEE
T ss_pred HH-------------HHHHHHHcCCChhcEEE
Confidence 22 23334456666555544
No 90
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=20.69 E-value=99 Score=23.75 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLAL 352 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~~ 352 (368)
|..++.++.+|+.+|++++++...+-
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~ 28 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVE 28 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67889999999999999999887653
No 91
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=20.58 E-value=3e+02 Score=26.31 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=32.6
Q ss_pred hHHHHHHHhhCCEEEEcCCCCcHH--HHhhcCCCCcEEEc---CCCcHHHHHH--HHHHHH-----hCCCeEEEEccCCC
Q 017645 97 TLRALRVLKSANVILSEDTRHSGK--LLQYYNIKTPLLSY---HKFNESQREQ--TVLNRL-----KQGEIVALISDAGT 164 (368)
Q Consensus 97 TlrAl~~L~~aDvI~~edtR~~~~--LL~~~~i~~~~is~---~~~ne~~~~~--~Ii~~l-----~~Gk~ValvSdaGd 164 (368)
|.|.+... +|+|+.- +..... .+..+ ...|+|.- +.|.-+..++ .|.+.. -+|.+|+++ ||
T Consensus 111 TarvLs~~--~D~IviR-~~~~~~~~~lA~~-~~vPVINag~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~v---GD 183 (339)
T 4a8t_A 111 TSRVLSRL--VDILMAR-VERHHSIVDLANC-ATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFV---GD 183 (339)
T ss_dssp HHHHHHHH--CSEEEEE-CSSHHHHHHHHHH-CSSCEEECCCSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEE---SS
T ss_pred HHHHHHHh--CCEEEEe-cCcHHHHHHHHHh-CCCCEEECCCCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEE---CC
Confidence 55655555 9999993 322221 12222 24577743 3454444333 344443 146789988 77
Q ss_pred C
Q 017645 165 P 165 (368)
Q Consensus 165 P 165 (368)
.
T Consensus 184 ~ 184 (339)
T 4a8t_A 184 A 184 (339)
T ss_dssp C
T ss_pred C
Confidence 5
No 92
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=20.31 E-value=3.7e+02 Score=25.20 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=34.1
Q ss_pred hHHHHHHHhhCCEEEEcCCCCcHHH--HhhcCCCCcEEE---cCCCcHHHHHH--HHHHHHh--CCCeEEEEccCCCC
Q 017645 97 TLRALRVLKSANVILSEDTRHSGKL--LQYYNIKTPLLS---YHKFNESQREQ--TVLNRLK--QGEIVALISDAGTP 165 (368)
Q Consensus 97 TlrAl~~L~~aDvI~~edtR~~~~L--L~~~~i~~~~is---~~~~ne~~~~~--~Ii~~l~--~Gk~ValvSdaGdP 165 (368)
|.|.+... +|+|+.- +.....+ +..+ ...|+|. -+.|.-+..++ .|.+... +|.+|+++ ||+
T Consensus 93 Tarvls~~--~D~iviR-~~~~~~~~~lA~~-~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~l~glkva~v---GD~ 163 (309)
T 4f2g_A 93 SAQVISRM--VDIIMIR-TFEQDIIQRFAEN-SRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWV---GDA 163 (309)
T ss_dssp HHHHHHHH--CSEEEEE-CSCHHHHHHHHHT-CSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEE---SCC
T ss_pred HHHHHHHh--CCEEEEe-cCCHHHHHHHHHh-CCCCEEECCCCccCcHHHHHHHHHHHHHhCCCCCCEEEEE---CCC
Confidence 55666655 9999993 3222222 2222 2467773 34555444433 3444432 58899999 884
No 93
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=20.30 E-value=3.6e+02 Score=25.72 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=45.9
Q ss_pred hHHHHHHHhhCCEEEEcCCCCcHH--HHhhcCCCCcEEEc---CCCcHHHHHH--HHHHHH--hCCCeEEEEccCCCCCC
Q 017645 97 TLRALRVLKSANVILSEDTRHSGK--LLQYYNIKTPLLSY---HKFNESQREQ--TVLNRL--KQGEIVALISDAGTPGI 167 (368)
Q Consensus 97 TlrAl~~L~~aDvI~~edtR~~~~--LL~~~~i~~~~is~---~~~ne~~~~~--~Ii~~l--~~Gk~ValvSdaGdP~i 167 (368)
|.|.+... +|+|+.- +..... .+..+ ...|+|.- +.|.-+..++ .|.+.. -+|.+|+++ ||+
T Consensus 118 TarvLs~y--~D~IviR-~~~~~~~~~lA~~-~~vPVINag~~~~HPtQaLaDl~TI~E~~G~l~glkva~v---GD~-- 188 (340)
T 4ep1_A 118 TAKVLSHY--IDGIMIR-TFSHADVEELAKE-SSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYV---GDG-- 188 (340)
T ss_dssp HHHHHHHH--CSEEEEE-CSCHHHHHHHHHH-CSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEE---SCC--
T ss_pred HHHHHHHh--CCEEEEe-cCChhHHHHHHHh-CCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEE---CCC--
Confidence 56666666 9999983 322221 12222 24677732 3454343333 344443 258899998 885
Q ss_pred CCcHHHHHHHhhhCCCCEEEEcCccHHHHHHHhcCCCCCcEEEE
Q 017645 168 SDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV 211 (368)
Q Consensus 168 sdpg~~Lv~~~~~~gi~V~vIPGiSA~~aA~a~sGlp~~~f~fv 211 (368)
. .. +-|.+.+++..|+ +|.++
T Consensus 189 ~----nv----------------a~Sl~~~~~~~G~---~v~~~ 209 (340)
T 4ep1_A 189 N----NV----------------CHSLLLASAKVGM---HMTVA 209 (340)
T ss_dssp C----HH----------------HHHHHHHHHHHTC---EEEEE
T ss_pred c----hh----------------HHHHHHHHHHcCC---EEEEE
Confidence 2 11 2356677777776 56666
No 94
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=20.07 E-value=68 Score=24.46 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHcCCCHHHHHHHH
Q 017645 327 HNLSMAVKLVAQGTSVRRKTIYSLA 351 (368)
Q Consensus 327 ~~~k~a~k~~a~~~~~~k~~vY~~~ 351 (368)
|..+|.++.+|+.+|++++++...+
T Consensus 4 mtk~eLi~~ia~~~~lsk~~~~~~v 28 (93)
T 3rhi_A 4 MNKTELIKNVAQNAEISQKEATVVV 28 (93)
T ss_dssp ---CHHHHHHHHHHTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6678888888888899988887664
No 95
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=20.06 E-value=90 Score=27.56 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=32.4
Q ss_pred CCCeEEEEccCCCCCCCCcHHHHHHHhhhCCCCEEEEcCccH
Q 017645 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (368)
Q Consensus 152 ~Gk~ValvSdaGdP~isdpg~~Lv~~~~~~gi~V~vIPGiSA 193 (368)
+|++|++. -.|--+.++-+.++++.+++.|++|.++--.+|
T Consensus 6 ~~k~I~lg-iTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 6 AGKHVGFG-LTGSHCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp TTCEEEEE-CCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCEEEEE-EEChHHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 46888877 578888887788999999999998888865544
No 96
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=20.03 E-value=3.4e+02 Score=24.84 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=45.9
Q ss_pred eEEEEecCCCCccch--hHHHHHHHhhC-CEEEEcCCCCcHH---HHhhcCCCCcEE-EcCCCcHHHHHHHHHHHHh-CC
Q 017645 82 GLYLVATPIGNLEDI--TLRALRVLKSA-NVILSEDTRHSGK---LLQYYNIKTPLL-SYHKFNESQREQTVLNRLK-QG 153 (368)
Q Consensus 82 ~LyiVGtGpGn~~dI--TlrAl~~L~~a-DvI~~edtR~~~~---LL~~~~i~~~~i-s~~~~ne~~~~~~Ii~~l~-~G 153 (368)
.+.=||.+.+..+.+ -...++.|++. |+.++=||..+.- -++.+. .+.++ +..-.+ ++.+.++..++ -|
T Consensus 49 diIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~~-Ga~iINdvs~~~--d~~~~~~~~~a~~~ 125 (271)
T 2yci_X 49 HYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHR-GHAMINSTSADQ--WKMDIFFPMAKKYE 125 (271)
T ss_dssp SEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSCHHHHHHHHHHCC-SCCEEEEECSCH--HHHHHHHHHHHHHT
T ss_pred CEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhCC-CCCEEEECCCCc--cccHHHHHHHHHcC
Confidence 466677766543322 34566677654 9888889887643 344442 45665 333222 32344444432 35
Q ss_pred CeEEEEcc--CCCCCC
Q 017645 154 EIVALISD--AGTPGI 167 (368)
Q Consensus 154 k~ValvSd--aGdP~i 167 (368)
-.|++++- .|+|--
T Consensus 126 ~~vv~m~~d~~G~p~t 141 (271)
T 2yci_X 126 AAIIGLTMNEKGVPKD 141 (271)
T ss_dssp CEEEEESCBTTBCCCS
T ss_pred CCEEEEecCCCCCCCC
Confidence 66777753 677763
Done!