BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017646
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%)
Query: 44 YVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSG-------VCDRDCHXXXXXXXXXXX 96
+ I+ N+YLT+R K + D C +P S C DC
Sbjct: 40 FDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSR 99
Query: 97 XXXXXXXXNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEER 156
N+ FQ + ++++ TEK G G+ A +D+ FV+EY GEV+D + + R
Sbjct: 100 CPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKAR 159
Query: 157 LWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFA 216
+ + ++Y + D +IDAT KGN SR++NHSC PN E QKW ++G+ R+G F
Sbjct: 160 VKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFT 219
Query: 217 TRDIKKGENLTYDYQFVQFGAD-QDCHCGAAGCRRKLGAK 255
T+ + G LT+DYQF ++G + Q C CG+A CR LG +
Sbjct: 220 TKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGE 259
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ F R ++++ +T + G G+ DIK+GEFV EYVGE+ID++ C R+ +
Sbjct: 83 NQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHD 142
Query: 165 ETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGE 224
TNFY+ +++D +IDA KGN +R++NH C PN E QKW ++G+TR+G+FA DIK G
Sbjct: 143 ITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGT 202
Query: 225 NLTYDYQFVQFGADQD-CHCGAAGCRRKLG 253
LT++Y G + C CGA C LG
Sbjct: 203 ELTFNYNLECLGNGKTVCKCGAPNCSGFLG 232
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 113 VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCE 172
V+ ++ + E+ G GI E +K G+F+IEY+GEV+ +Q R+ + H ++ Y
Sbjct: 73 VQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYH-NHSDHYCLN 131
Query: 173 INRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQF 232
++ MVID+ GN++R+INHSC PN EMQKW ++G RIG++A +D+ G LTYDY F
Sbjct: 132 LDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNF 191
Query: 233 VQFGAD--QDCHCGAAGCRRKLGAKPSK 258
F + Q C CG CR +G K +
Sbjct: 192 HSFNVEKQQLCKCGFEKCRGIIGGKSQR 219
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 125 GAGIVADEDIKRGEFVIEYVGEVIDDQTCE--ERLWKMKHLGETNFYLCEINRDMVIDAT 182
G G+ +I GE VIEY G VI + E+ + K +G Y+ I+ V+DAT
Sbjct: 63 GRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIG---CYMFRIDDSEVVDAT 119
Query: 183 YKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQD-- 240
GN +R+INHSC PN + IDG+ I IFA R I +GE LTYDY+F A
Sbjct: 120 MHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLP 179
Query: 241 CHCGAAGCRRKL 252
C+CGA CR+ L
Sbjct: 180 CNCGAKKCRKFL 191
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 125 GAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRD-MVIDATY 183
G G+ IKR FV+EYVGEVI + E R + G T + + D +DA
Sbjct: 152 GWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAAR 211
Query: 184 KGNKSRYINHSCCPNTEMQKWIIDG----ETRIGIFATRDIKKGENLTYDYQFVQFG--- 236
GN S ++NHSC PN ++ ID RI +F+TR I GE LT+DYQ G
Sbjct: 212 YGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDIS 271
Query: 237 ------------ADQDCHCGAAGCRRKL 252
C CGA CR L
Sbjct: 272 SDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 19/156 (12%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 138 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 189
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 190 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 249
Query: 217 TRDIKKGENLTYDY--QFVQF-GADQDCHCGAAGCR 249
TR I+ GE L +DY +F G C CG+ CR
Sbjct: 250 TRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 19/156 (12%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 136 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 187
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 188 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 247
Query: 217 TRDIKKGENLTYDY--QFVQF-GADQDCHCGAAGCR 249
TR I+ GE L +DY +F G C CG+ CR
Sbjct: 248 TRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 283
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 19/156 (12%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 112 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 163
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 164 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 223
Query: 217 TRDIKKGENLTYDY--QFVQF-GADQDCHCGAAGCR 249
TR I+ GE L +DY +F G C CG+ CR
Sbjct: 224 TRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 259
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 19/161 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ Q+ +++L +T K G G+ A + I +G F+ EYVGE+I D + R
Sbjct: 117 NRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-------- 168
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPN-TEMQKWIIDGET---RIGIFA 216
E + YL ++ N+D IDA Y GN SR+INH C PN ++ +++ + RI F+
Sbjct: 169 EDDSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFS 228
Query: 217 TRDIKKGENLTYDY--QFVQFGADQ-DCHCGAAGCRRKLGA 254
+RDI+ GE L +DY +F + C CG+ C+ A
Sbjct: 229 SRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCKHSAEA 269
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 19/161 (11%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ Q+ +++L +T K G G+ A + I +G F+ EYVGE+I D + R
Sbjct: 119 NRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVR-------- 170
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPN-TEMQKWIIDGET---RIGIFA 216
E + YL ++ N+D IDA Y GN SR+INH C PN ++ +++ + RI F+
Sbjct: 171 EDDSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFS 230
Query: 217 TRDIKKGENLTYDY--QFVQFGADQ-DCHCGAAGCRRKLGA 254
+RDI+ GE L +DY +F + C CG+ C+ A
Sbjct: 231 SRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCKHSAEA 271
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 19/156 (12%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ QN +++L +T G G+ + +DI G FV EYVGE+I D + R
Sbjct: 137 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------- 188
Query: 165 ETNFYLCEI-NRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGIFA 216
E + YL ++ N+D IDA + GN SR+INH C PN + + + RI F+
Sbjct: 189 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 248
Query: 217 TRDIKKGENLTYDY--QFVQF-GADQDCHCGAAGCR 249
TR I+ GE L +D +F G C CG+ CR
Sbjct: 249 TRLIEAGEQLGFDAGERFWDIKGKLFSCRCGSPKCR 284
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINR 175
+++ +T+ G G+ +IKRG+FV Y+GE+I + + R + + YL +++
Sbjct: 135 LQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDK 194
Query: 176 --------------DMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETR----IGIFAT 217
+ +D Y +R+INHSC PN + + D + + +FA
Sbjct: 195 FSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAI 254
Query: 218 RDIKKGENLTYDYQFVQFGADQDCH------------CGAAGCRRKL 252
+DI KG LT+DY G + D H CG A CR L
Sbjct: 255 KDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 109 QNRPVKK-----MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHL 163
+NR V+K ++ +T K G G+ E I +G FV EY GEV+ + R+ ++
Sbjct: 116 RNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRI-HLQTK 174
Query: 164 GETNFYLCEINR--------DMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGET-RIGI 214
++N Y+ I + +D TY GN R++NHSC PN M ID ++ +
Sbjct: 175 SDSN-YIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLAL 233
Query: 215 FATRDIKKGENLTYDY--QFVQFGAD------------QDCHCGAAGCRRKL 252
FA +DI E L+YDY +++ + C+CGA C L
Sbjct: 234 FAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 33 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 92
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L YDY
Sbjct: 93 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 27 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 86
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L YDY
Sbjct: 87 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+E+ G++I+ D E L+ G +Y
Sbjct: 32 MKIDLIDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 91
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L YDY
Sbjct: 92 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 32 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 91
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS C N + + IDG + + A+RDI GE L +DY
Sbjct: 92 LSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY 150
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVID--DQTCEERLWKMK-HLGETNFYLCE 172
MK+ + G G++A + RG+FV+EY G++I+ D E L+ G +Y
Sbjct: 31 MKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQY 90
Query: 173 INRDMVIDATYKGNK-SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+++ +DAT + N+ R INHS N + + IDG + + A+RDI GE L YDY
Sbjct: 91 LSKTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 22/167 (13%)
Query: 105 NKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164
N+ Q +++ +T++ G G+ + G F+ Y+GEVI +R G
Sbjct: 128 NRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDG 187
Query: 165 ETNFYLCEINRD---MVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETR----IGIFAT 217
T + ++ D +DA G+ SR+ NHSC PN + + + R + FA
Sbjct: 188 ITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAI 247
Query: 218 RDIKKGENLTYDYQF------VQFGADQ---------DCHCGAAGCR 249
+DI+ E LT+DY VQ Q C CG+A CR
Sbjct: 248 KDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCR 294
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 121 TEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVID 180
+E+ GA IVA ++ KR + + VG + + EE ++H GE +F + R
Sbjct: 143 SEQNGAKIVATKEWKRNDKIELLVGCIAELSEIEENXL-LRH-GENDFSVXYSTRKNC-- 198
Query: 181 ATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQD 240
A + +INH C PN K++ G + A RDI+ GE ++ Y FG + +
Sbjct: 199 AQLWLGPAAFINHDCRPNC---KFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNE 255
Query: 241 -CHCGAAGCRRKLGAKPSK 258
C C RR GA S+
Sbjct: 256 FCECYTCE-RRGTGAFKSR 273
>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C
Length = 155
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 274 VAVSSPKLKAILSGKDFYQNGDLH--IGSSRPPYNQRQICPQCCIGKVIRISHPKNESSF 331
+A + P L+A L D + D+ G PP R++ CI K ++ + K+ +S
Sbjct: 6 LAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTASG 65
Query: 332 GIIRRFDEYSRKHSVLFE 349
++ + E S+K + F+
Sbjct: 66 RMVDDYWEASKKMLMEFD 83
>pdb|3IZ6|M Chain M, Localization Of The Small Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 152
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 17 FNKLLKQIGNPVEFELPDWFIKPK 40
++L+ + NP +F++PDWF+ K
Sbjct: 64 MDRLMAVVHNPRQFKVPDWFLNRK 87
>pdb|3U4Y|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
(Dtox_1751) From Desulfotomaculum Acetoxidans Dsm 771.
pdb|3U4Y|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
(Dtox_1751) From Desulfotomaculum Acetoxidans Dsm 771
Length = 331
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 28/126 (22%)
Query: 211 RIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKISSDAALKLV 270
RI F+T ++ +T Y FV DC S ++SD LV
Sbjct: 21 RISFFSTDTLEILNQITLGYDFVDTAITSDC---------------SNVVVTSDFCQTLV 65
Query: 271 ACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESS 330
+ + PK+ AI G+ + D+ P +Q + V ++HP N S
Sbjct: 66 QIETQLEPPKVVAIQEGQSSXADVDI------TPDDQFAVT-------VTGLNHPFNXQS 112
Query: 331 FGIIRR 336
+ ++
Sbjct: 113 YSFLKN 118
>pdb|2X61|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
pdb|2X61|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii In
Complex With Trisaccharide Acceptor And Cmp
Length = 258
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 269 LVACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKN 327
+ C VA++ + LSG DFYQNG + ++ N ++ P I H KN
Sbjct: 134 VYMCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQK-NLLKLAPNFKNDNSHYIGHSKN 191
>pdb|2X63|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii N51a In
Complex With Cmp
Length = 258
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 269 LVACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKN 327
+ C VA++ + LSG DFYQNG + ++ N ++ P I H KN
Sbjct: 133 VYMCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQK-NLLKLAPNFKNDNSHYIGHSKN 190
>pdb|2X62|A Chain A, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
pdb|2X62|B Chain B, Crystal Structure Of The Sialyltransferase Cst-Ii Y81f In
Complex With Cmp
Length = 259
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 269 LVACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKN 327
+ C VA++ + LSG DFYQNG + ++ N ++ P I H KN
Sbjct: 134 VYMCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQK-NLLKLAPNFKNDNSHYIGHSKN 191
>pdb|1RO7|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|C Chain C, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac.
pdb|1RO7|D Chain D, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cmp-3fneuac
Length = 259
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 269 LVACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKN 327
+ C VA++ + LSG DFYQNG + ++ N ++ P I H KN
Sbjct: 134 VYXCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQK-NLLKLAPNFKNDNSHYIGHSKN 191
>pdb|2DRJ|A Chain A, Xray Structure Of Alpha-2,38-Sialyltransferase Cstii F91y
Mutant
Length = 262
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 269 LVACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKN 327
+ C VA++ + LSG DFYQNG + ++ N ++ P I H KN
Sbjct: 137 VYMCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQK-NLLKLAPNFKNDNSHYIGHSKN 194
>pdb|1RO8|A Chain A, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
pdb|1RO8|B Chain B, Structural Analysis Of The Sialyltransferase Cstii From
Campylobacter Jejuni In Complex With A Substrate
Analogue, Cytidine-5'-monophosphate
Length = 262
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 269 LVACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKN 327
+ C VA++ + LSG DFYQNG + ++ N ++ P I H KN
Sbjct: 137 VYXCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQK-NLLKLAPNFKNDNSHYIGHSKN 194
>pdb|2WQQ|A Chain A, Crystallographic Analysis Of Monomeric Cstii
Length = 291
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 269 LVACQVAVSSPKLKAILSGKDFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKN 327
+ C VA++ + LSG DFYQNG + ++ N ++ P I H KN
Sbjct: 134 VYMCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQK-NLLKLAPNFKNDNSHYIGHSKN 191
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 296 LHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFD 338
+H+ ++ + P C V+++ H ES + ++RRFD
Sbjct: 59 MHVPEHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFD 101
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 206 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 241
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 204 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 205 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 240 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 275
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 204 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230
+NHSC PN I+ + + A RDI+ GE LT Y
Sbjct: 205 LNHSCDPNCS----IVFNGPHLLLRAVRDIEVGEELTICY 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,940,120
Number of Sequences: 62578
Number of extensions: 447686
Number of successful extensions: 907
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 37
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)