Query 017646
Match_columns 368
No_of_seqs 410 out of 1809
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4442 Clathrin coat binding 100.0 3.2E-58 7E-63 467.7 17.1 223 36-258 36-265 (729)
2 KOG1082 Histone H3 (Lys9) meth 100.0 1.6E-36 3.5E-41 301.3 11.3 234 19-256 63-357 (364)
3 KOG1080 Histone H3 (Lys4) meth 100.0 4.9E-33 1.1E-37 299.5 11.1 138 115-252 867-1004(1005)
4 KOG1079 Transcriptional repres 100.0 4.9E-30 1.1E-34 260.6 9.1 150 84-235 553-713 (739)
5 smart00317 SET SET (Su(var)3-9 99.9 9.1E-26 2E-30 185.8 13.3 115 116-230 2-116 (116)
6 KOG1083 Putative transcription 99.9 3.5E-26 7.5E-31 240.6 3.7 134 103-237 1166-1300(1306)
7 KOG1141 Predicted histone meth 99.9 4.6E-26 1E-30 234.5 2.7 125 26-150 683-835 (1262)
8 KOG1085 Predicted methyltransf 99.8 3.8E-19 8.3E-24 166.1 10.1 121 113-233 255-379 (392)
9 COG2940 Proteins containing SE 99.7 2.2E-18 4.8E-23 177.3 6.7 151 102-253 320-480 (480)
10 PF00856 SET: SET domain; Int 99.7 2E-16 4.4E-21 135.7 7.4 107 125-231 1-162 (162)
11 KOG1081 Transcription factor N 99.5 1.1E-14 2.4E-19 148.6 1.9 155 87-257 286-441 (463)
12 PF09465 LBR_tudor: Lamin-B re 99.4 1.8E-13 4E-18 98.2 6.3 46 316-363 8-54 (55)
13 KOG2589 Histone tail methylase 99.3 3.1E-12 6.7E-17 123.6 5.5 125 122-253 135-260 (453)
14 smart00570 AWS associated with 99.2 2.4E-12 5.2E-17 91.9 2.0 50 64-113 2-51 (51)
15 KOG1081 Transcription factor N 98.6 4.8E-08 1E-12 100.1 4.7 258 1-261 1-272 (463)
16 PF05033 Pre-SET: Pre-SET moti 98.5 3.8E-08 8.2E-13 80.6 2.3 81 21-106 2-103 (103)
17 KOG2461 Transcription factor B 98.2 1.9E-06 4.1E-11 86.7 5.0 110 112-234 26-146 (396)
18 smart00468 PreSET N-terminal t 97.8 1.8E-05 3.9E-10 64.3 4.0 57 20-76 3-60 (98)
19 smart00333 TUDOR Tudor domain. 97.4 0.00037 8E-09 50.5 5.5 43 315-359 4-48 (57)
20 cd04508 TUDOR Tudor domains ar 97.3 0.00068 1.5E-08 47.3 5.5 42 317-359 1-44 (48)
21 smart00743 Agenet Tudor-like d 97.0 0.0016 3.5E-08 48.0 5.7 44 315-359 4-51 (61)
22 PF09038 53-BP1_Tudor: Tumour 96.8 0.0031 6.7E-08 52.9 5.8 41 313-354 2-43 (122)
23 smart00508 PostSET Cysteine-ri 96.3 0.002 4.4E-08 39.6 1.3 18 238-255 2-19 (26)
24 KOG1141 Predicted histone meth 96.1 0.0097 2.1E-07 63.8 6.2 163 90-252 981-1261(1262)
25 KOG2084 Predicted histone tail 90.9 0.42 9.2E-06 48.5 5.8 43 190-236 208-251 (482)
26 KOG4675 Uncharacterized conser 90.6 0.1 2.2E-06 49.8 0.8 41 307-347 152-193 (273)
27 PF06003 SMN: Survival motor n 89.9 0.82 1.8E-05 43.9 6.4 48 313-360 68-117 (264)
28 KOG1337 N-methyltransferase [G 84.8 0.66 1.4E-05 48.1 2.7 40 190-232 239-278 (472)
29 KOG1525 Sister chromatid cohes 82.5 0.062 1.3E-06 61.4 -6.4 58 309-366 982-1041(1266)
30 PF15057 DUF4537: Domain of un 80.7 3.8 8.2E-05 34.8 5.3 41 317-358 1-42 (124)
31 PF00567 TUDOR: Tudor domain; 80.0 6.3 0.00014 31.5 6.4 44 316-360 54-99 (121)
32 PF08605 Rad9_Rad53_bind: Fung 69.0 8.9 0.00019 33.0 4.6 34 321-354 15-49 (131)
33 PF08863 YolD: YolD-like prote 61.2 28 0.0006 27.1 5.9 41 319-359 46-87 (92)
34 cd01735 LSm12_N LSm12 belongs 59.5 38 0.00082 25.2 5.8 33 315-347 4-36 (61)
35 PF03638 TCR: Tesmin/TSO1-like 58.6 6 0.00013 27.2 1.3 37 65-107 3-40 (42)
36 PF08666 SAF: SAF domain; Int 57.5 6.4 0.00014 28.4 1.5 15 213-227 3-17 (63)
37 KOG1338 Uncharacterized conser 55.1 7.9 0.00017 39.2 2.0 40 187-232 218-260 (466)
38 cd00600 Sm_like The eukaryotic 53.9 17 0.00037 26.2 3.3 30 313-342 2-31 (63)
39 PF01423 LSM: LSM domain ; In 51.8 19 0.00042 26.4 3.3 30 313-342 4-33 (67)
40 PRK00737 small nuclear ribonuc 51.0 23 0.00051 26.9 3.7 32 312-343 9-40 (72)
41 PF02067 Metallothio_5: Metall 50.9 12 0.00025 25.6 1.7 22 80-103 6-27 (41)
42 cd01717 Sm_B The eukaryotic Sm 50.5 19 0.0004 27.9 3.1 31 313-343 6-36 (79)
43 cd01731 archaeal_Sm1 The archa 50.0 26 0.00056 26.2 3.8 32 313-344 6-37 (68)
44 KOG1775 U6 snRNA-associated Sm 45.8 16 0.00034 28.3 1.9 31 312-342 12-42 (84)
45 cd01719 Sm_G The eukaryotic Sm 44.7 36 0.00077 26.0 3.8 34 310-343 3-36 (72)
46 COG1958 LSM1 Small nuclear rib 44.2 29 0.00064 26.7 3.4 34 311-344 11-44 (79)
47 KOG0644 Uncharacterized conser 44.1 27 0.00059 38.7 4.1 43 316-358 981-1036(1113)
48 smart00651 Sm snRNP Sm protein 42.4 32 0.00069 25.2 3.2 31 312-342 3-33 (67)
49 KOG1079 Transcriptional repres 42.4 10 0.00022 40.7 0.7 29 79-107 511-539 (739)
50 PF00856 SET: SET domain; Int 41.7 15 0.00032 30.5 1.4 17 212-228 2-18 (162)
51 cd01727 LSm8 The eukaryotic Sm 40.9 35 0.00076 26.0 3.3 30 313-342 5-34 (74)
52 PRK11911 flgD flagellar basal 40.4 69 0.0015 27.9 5.3 43 313-355 89-131 (140)
53 cd01726 LSm6 The eukaryotic Sm 39.2 41 0.00089 25.0 3.4 30 313-342 6-35 (67)
54 PF05641 Agenet: Agenet domain 37.9 72 0.0016 23.7 4.6 34 316-350 3-40 (68)
55 cd01728 LSm1 The eukaryotic Sm 37.7 40 0.00087 25.9 3.2 30 313-342 8-37 (74)
56 PF02237 BPL_C: Biotin protein 37.6 1.2E+02 0.0027 20.9 5.4 39 316-356 2-40 (48)
57 cd01722 Sm_F The eukaryotic Sm 36.6 48 0.0011 24.8 3.4 31 312-342 6-36 (68)
58 PF07039 DUF1325: SGF29 tudor- 35.6 90 0.0019 26.7 5.3 39 316-354 74-114 (130)
59 COG0231 Efp Translation elonga 33.8 1E+02 0.0023 26.3 5.4 45 316-366 48-93 (131)
60 PF15057 DUF4537: Domain of un 33.6 85 0.0018 26.5 4.8 44 316-359 58-107 (124)
61 KOG2155 Tubulin-tyrosine ligas 33.6 22 0.00048 36.6 1.4 49 186-234 203-253 (631)
62 smart00317 SET SET (Su(var)3-9 33.5 70 0.0015 25.0 4.2 16 126-141 98-113 (116)
63 PRK06009 flgD flagellar basal 33.0 87 0.0019 27.3 4.8 41 313-356 93-133 (140)
64 cd01729 LSm7 The eukaryotic Sm 32.4 53 0.0011 25.6 3.1 30 313-342 8-37 (81)
65 PF14100 PmoA: Methane oxygena 31.7 52 0.0011 31.6 3.6 44 190-234 205-254 (271)
66 cd01732 LSm5 The eukaryotic Sm 31.4 60 0.0013 25.1 3.2 31 314-344 10-40 (76)
67 smart00858 SAF This domain fam 31.0 32 0.00069 24.6 1.6 16 213-228 3-18 (64)
68 PF00313 CSD: 'Cold-shock' DNA 30.3 86 0.0019 22.8 3.9 25 331-355 2-26 (66)
69 cd01730 LSm3 The eukaryotic Sm 30.2 63 0.0014 25.1 3.2 29 313-341 7-35 (82)
70 PF11717 Tudor-knot: RNA bindi 29.3 1.5E+02 0.0032 21.1 4.8 34 316-350 3-39 (55)
71 PRK09618 flgD flagellar basal 28.5 1.4E+02 0.003 26.1 5.3 40 313-353 88-128 (142)
72 PF02736 Myosin_N: Myosin N-te 28.4 1.1E+02 0.0024 20.6 3.8 34 321-356 3-38 (42)
73 PRK14637 hypothetical protein; 28.4 1.1E+02 0.0023 26.9 4.7 45 311-358 92-137 (151)
74 PF02576 DUF150: Uncharacteris 28.1 1.9E+02 0.004 24.7 6.1 37 313-351 83-123 (141)
75 PRK10943 cold shock-like prote 26.7 1E+02 0.0022 23.2 3.7 24 332-355 6-29 (69)
76 COG1588 POP4 RNase P/RNase MRP 26.6 2.1E+02 0.0046 23.2 5.6 47 303-353 3-52 (95)
77 KOG1171 Metallothionein-like p 25.5 20 0.00042 36.6 -0.5 37 63-105 215-252 (406)
78 PRK09507 cspE cold shock prote 24.8 1.1E+02 0.0024 23.0 3.6 23 332-354 6-28 (69)
79 COG1261 FlgA Flagellar basal b 24.1 3.6E+02 0.0079 25.2 7.6 106 210-335 94-211 (220)
80 PF08169 RBB1NT: RBB1NT (NUC16 24.1 82 0.0018 25.7 2.9 27 311-337 3-31 (96)
81 cd01723 LSm4 The eukaryotic Sm 24.0 1.3E+02 0.0029 22.9 4.0 33 313-345 7-39 (76)
82 COG1278 CspC Cold shock protei 23.9 69 0.0015 24.3 2.3 24 332-355 4-27 (67)
83 KOG3026 Splicing factor SPF30 23.3 92 0.002 29.5 3.4 36 314-349 91-127 (262)
84 KOG1338 Uncharacterized conser 23.0 55 0.0012 33.4 2.0 25 123-147 39-63 (466)
85 PF13964 Kelch_6: Kelch motif 22.2 73 0.0016 21.6 2.1 19 350-368 27-45 (50)
86 TIGR02381 cspD cold shock doma 21.1 1.3E+02 0.0029 22.4 3.4 23 332-354 4-26 (68)
87 cd01720 Sm_D2 The eukaryotic S 20.8 1.3E+02 0.0028 23.9 3.5 26 317-342 14-39 (87)
88 PF12904 Collagen_bind_2: Puta 20.8 1.1E+02 0.0024 24.6 3.1 28 308-335 37-68 (93)
89 PF12701 LSM14: Scd6-like Sm d 20.7 2.5E+02 0.0053 22.8 5.1 30 313-342 4-33 (96)
No 1
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-58 Score=467.69 Aligned_cols=223 Identities=40% Similarity=0.807 Sum_probs=208.8
Q ss_pred CCCCCCCCcEEccceeeccccccccCCCCCccccccCCCCC----CCCCCCCCCccceeeeCCC-CCC-CCCCCCCccCc
Q 017646 36 FIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGS----SGVCDRDCHCGMLLSSCSS-GCK-CGNSCLNKPFQ 109 (368)
Q Consensus 36 ~~~~~p~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~~~----~~~C~~~C~c~~~~~eC~~-~C~-C~~~C~Nr~~q 109 (368)
....-|..|.-+..++|..++.+.....+.|.|+|.+..++ .+.||.+|.|++++.||++ .|+ ||..|+|++||
T Consensus 36 ~k~e~~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQ 115 (729)
T KOG4442|consen 36 LKEEALTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGEDCINRMTSIECSDRECPRCGVYCKNQRFQ 115 (729)
T ss_pred hhcccchhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCccccchhhhcccCCccCCCccccccchhhh
Confidence 34566888999999999888765555547899999996543 5679999999999999999 899 99999999999
Q ss_pred cCCcccEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcceeEeeecccccccccccCCccc
Q 017646 110 NRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSR 189 (368)
Q Consensus 110 ~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~~~~~~~IDa~~~Gn~aR 189 (368)
+.+..+++||.|+++||||+|.++|++|+||+||.||||+..+++.|...|...+..|+|+|.+..+.+|||+.+||+||
T Consensus 116 kkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaR 195 (729)
T KOG4442|consen 116 KKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGNLAR 195 (729)
T ss_pred hhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCCCCCCCC-ceeecCCCCCccccCCCCCC
Q 017646 190 YINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGAD-QDCHCGAAGCRRKLGAKPSK 258 (368)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~-~~C~Cgs~~Crg~l~~~~~~ 258 (368)
||||||+|||++++|.|+|..||+|||.|.|.+||||||||++++||.+ ++|+||+++||||||++|+.
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk~q~ 265 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGKPQT 265 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCCCcc
Confidence 9999999999999999999999999999999999999999999999875 99999999999999999765
No 2
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.6e-36 Score=301.27 Aligned_cols=234 Identities=30% Similarity=0.500 Sum_probs=178.0
Q ss_pred HHHHhhCCCeEEeCCCCCCCCCCCCcEEccceeeccccccccCCCCCccccccCCCCCCCCCCCCCCcc-----------
Q 017646 19 KLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCG----------- 87 (368)
Q Consensus 19 ~l~~~~~~~~~f~lp~~~~~~~p~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~~C~c~----------- 87 (368)
.++++..+..+.++-+.++...++.|.||...++... ..........|.|...+... .|. .|.|.
T Consensus 63 ~d~~~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~--~~~~~~~~~~c~C~~~~~~~-~~~-~C~C~~~n~~~~~~~~ 138 (364)
T KOG1082|consen 63 EDIALGSENLPVPLVNRIDEDAPLYFQYIATEIVDPG--ELSDCENSTGCRCCSSCSSV-LPL-TCLCERHNGGLVAYTC 138 (364)
T ss_pred ccccCccccCceeeeeeccCCccccceeccccccCcc--ccccCccccCCCccCCCCCC-CCc-cccChHhhCCcccccc
Confidence 3455555666666655565444489999998877553 12333456779999765432 111 24432
Q ss_pred -----------ceeeeCCCCCCCCCCCCCccCccCCcccEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHH
Q 017646 88 -----------MLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEER 156 (368)
Q Consensus 88 -----------~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r 156 (368)
..++||++.|.|+..|.||++|.+...+++|++++.+||||+|.+.|++|+||+||+||+++..+++.+
T Consensus 139 ~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~ 218 (364)
T KOG1082|consen 139 DGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRR 218 (364)
T ss_pred CCccccccccCccccccccCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhc
Confidence 248899999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHhhhcCC--ccee---------------------EeeecccccccccccCCccccccCCCCCCcceeEEEECC----e
Q 017646 157 LWKMKHLGE--TNFY---------------------LCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDG----E 209 (368)
Q Consensus 157 ~~~~~~~~~--~~~y---------------------~~~~~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g----~ 209 (368)
......... ...+ .......+.|||...||++|||||||.||+.++.+..++ .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~ 298 (364)
T KOG1082|consen 219 THLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLY 298 (364)
T ss_pred cccccccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccch
Confidence 322211111 0010 112245689999999999999999999999998887764 3
Q ss_pred EEEEEEEccCCCCCCeEEEecCCCCC-----C-------CCceeecCCCCCccccCCCC
Q 017646 210 TRIGIFATRDIKKGENLTYDYQFVQF-----G-------ADQDCHCGAAGCRRKLGAKP 256 (368)
Q Consensus 210 ~ri~i~A~RdI~~GEELT~dY~~~~~-----~-------~~~~C~Cgs~~Crg~l~~~~ 256 (368)
++++|||+++|.+|||||+||+..+. + ....|.|++.+||+.++..+
T Consensus 299 ~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~~ 357 (364)
T KOG1082|consen 299 LRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSAP 357 (364)
T ss_pred heeeeeeccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccCCCc
Confidence 78999999999999999999996632 1 23679999999999987654
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=4.9e-33 Score=299.52 Aligned_cols=138 Identities=40% Similarity=0.698 Sum_probs=132.4
Q ss_pred cEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcceeEeeecccccccccccCCccccccCC
Q 017646 115 KMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHS 194 (368)
Q Consensus 115 ~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~~~~~~~IDa~~~Gn~aRfINHS 194 (368)
.|...++..+||||||.+.|.+|++|+||+||+|...-++.|...|...+....|+|.++...+|||+.+||+|||||||
T Consensus 867 ~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHs 946 (1005)
T KOG1080|consen 867 YVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFINHS 946 (1005)
T ss_pred hhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheeecc
Confidence 47778899999999999999999999999999999999999988888888889999999999999999999999999999
Q ss_pred CCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCCCCCCCCceeecCCCCCcccc
Q 017646 195 CCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKL 252 (368)
Q Consensus 195 C~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~~~C~Cgs~~Crg~l 252 (368)
|+|||....+.|+|+.+|+|||.|+|.+||||||||.|.......+|+||+++|||++
T Consensus 947 C~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 947 CNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGFL 1004 (1005)
T ss_pred cCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCcccccc
Confidence 9999999999999999999999999999999999999998888899999999999997
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.96 E-value=4.9e-30 Score=260.63 Aligned_cols=150 Identities=35% Similarity=0.649 Sum_probs=137.2
Q ss_pred CCccceeeeCCCC-CCC-C---------CCCCCccCccCCcccEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhh
Q 017646 84 CHCGMLLSSCSSG-CKC-G---------NSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQT 152 (368)
Q Consensus 84 C~c~~~~~eC~~~-C~C-~---------~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e 152 (368)
|.|.+-..||.|. |.+ + .+|.|-.+|++..+++.+.+|...|||||+.+.+.+++||.||+||+|+++|
T Consensus 553 CpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dE 632 (739)
T KOG1079|consen 553 CPCYLAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDE 632 (739)
T ss_pred CchhhhccccCchHHhccCcccccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchh
Confidence 6666678888863 644 2 3899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcceeEeeecccccccccccCCccccccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCC
Q 017646 153 CEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQF 232 (368)
Q Consensus 153 ~~~r~~~~~~~~~~~~y~~~~~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~ 232 (368)
+++|.+.+... ...|+|.+..+++|||+++||.+||+|||-+|||....+++.|..||+|||.|+|.+||||||||++
T Consensus 633 ADrRGkiYDr~--~cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 633 ADRRGKIYDRY--MCSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred hhhcccccccc--cceeeeeccccceEeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 99998877654 4569999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 017646 233 VQF 235 (368)
Q Consensus 233 ~~~ 235 (368)
+.-
T Consensus 711 s~~ 713 (739)
T KOG1079|consen 711 SPE 713 (739)
T ss_pred Ccc
Confidence 764
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.93 E-value=9.1e-26 Score=185.78 Aligned_cols=115 Identities=49% Similarity=0.780 Sum_probs=100.8
Q ss_pred EEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcceeEeeecccccccccccCCccccccCCC
Q 017646 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSC 195 (368)
Q Consensus 116 l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~~~~~~~IDa~~~Gn~aRfINHSC 195 (368)
++++.++++|+||||+++|++|++|++|.|.++...+...+...+........|++.....++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 57788899999999999999999999999999998877766543333333356788887789999999999999999999
Q ss_pred CCCcceeEEEECCeEEEEEEEccCCCCCCeEEEec
Q 017646 196 CPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230 (368)
Q Consensus 196 ~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY 230 (368)
.||+.+..+..++..++.++|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999988888877799999999999999999999
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.92 E-value=3.5e-26 Score=240.56 Aligned_cols=134 Identities=43% Similarity=0.782 Sum_probs=120.8
Q ss_pred CCCccCccCC-cccEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcceeEeeecccccccc
Q 017646 103 CLNKPFQNRP-VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDA 181 (368)
Q Consensus 103 C~Nr~~q~~~-~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~~~~~~~IDa 181 (368)
|+|+.+|+.. -++|++++.+.+||||.|.++|++|+||+||+|+|++.++++.++.... ....+.|+..+..+++||+
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~-~~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLY-HNDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccC-CCCCcccccccCccccCCh
Confidence 8889998764 4789999999999999999999999999999999999998888743332 3345679999999999999
Q ss_pred cccCCccccccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCCCCCCC
Q 017646 182 TYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA 237 (368)
Q Consensus 182 ~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~ 237 (368)
.++||.+||+||||.|||.++.|.++|..|++|||+|||.+||||||||++..++-
T Consensus 1245 ~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~~ 1300 (1306)
T KOG1083|consen 1245 PRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFNY 1300 (1306)
T ss_pred hhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccccCC
Confidence 99999999999999999999999999999999999999999999999999876543
No 7
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.92 E-value=4.6e-26 Score=234.46 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=95.8
Q ss_pred CCeEEeCCCCCCCCCCCCcEEccceeeccccccccCCCCCccccccCCCCCCCCCC--------CCCC-ccc--------
Q 017646 26 NPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCD--------RDCH-CGM-------- 88 (368)
Q Consensus 26 ~~~~f~lp~~~~~~~p~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~--------~~C~-c~~-------- 88 (368)
|.+++...++++..+||.+.|-+.-|.....+..+.++....|+|..+|.++..|. ..|. +.+
T Consensus 683 e~vpis~~neids~~lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~~t~gyk 762 (1262)
T KOG1141|consen 683 EHVPISEKNEIDSHRLPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVASTNGYK 762 (1262)
T ss_pred cccccceeecccCcCCccchhheeeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCcccccCcchh
Confidence 33444444555667889999988877766666666777888999999775544441 0111 000
Q ss_pred ----------eeeeCCCCCCCC-CCCCCccCccCCcccEEEEEecCCCcEEEecccCCCCcEEEEEcceeech
Q 017646 89 ----------LLSSCSSGCKCG-NSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDD 150 (368)
Q Consensus 89 ----------~~~eC~~~C~C~-~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~ 150 (368)
-.+||+..|.|. ..|.||.+|.+...++.+|.+..+|||++...+|.+|.||+-|.|.+++.
T Consensus 763 yKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 763 YKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLH 835 (1262)
T ss_pred hHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhh
Confidence 168999999876 58999999999999999999999999999999999999999999987643
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.79 E-value=3.8e-19 Score=166.14 Aligned_cols=121 Identities=31% Similarity=0.439 Sum_probs=103.5
Q ss_pred cccEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcc---eeEeeeccccccccccc-CCcc
Q 017646 113 VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETN---FYLCEINRDMVIDATYK-GNKS 188 (368)
Q Consensus 113 ~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~---~y~~~~~~~~~IDa~~~-Gn~a 188 (368)
...+.+..-.++|.||+|+..+.+|+||.||.|.+|.-.++..|...|......- +|+-..+..++|||+.- +-++
T Consensus 255 ~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~et~~lG 334 (392)
T KOG1085|consen 255 NEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKETPWLG 334 (392)
T ss_pred ccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccccccch
Confidence 3456777788899999999999999999999999999988888877766544333 33444567899999965 5579
Q ss_pred ccccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCCC
Q 017646 189 RYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFV 233 (368)
Q Consensus 189 RfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~ 233 (368)
|+||||-.+|+....+.++|.++++++|.|||.+||||+||||.-
T Consensus 335 RLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred hhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 999999999999999999999999999999999999999999863
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.73 E-value=2.2e-18 Score=177.34 Aligned_cols=151 Identities=36% Similarity=0.583 Sum_probs=119.1
Q ss_pred CCCCccCccCCcccEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcceeEeeecc-ccccc
Q 017646 102 SCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINR-DMVID 180 (368)
Q Consensus 102 ~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~~~~-~~~ID 180 (368)
.+.|..-.........+..+..+|+|+||.+.|++|++|.+|.|+++...++..+.......+ ..+.+..+.. ..++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 398 (480)
T COG2940 320 ELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLG-NEFSFGLLEDKDKVRD 398 (480)
T ss_pred chhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccc-cccchhhccccchhhh
Confidence 344443334444556677789999999999999999999999999999888877765552222 2222223332 78999
Q ss_pred ccccCCccccccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCCCCCCC---------CceeecCCCCCccc
Q 017646 181 ATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA---------DQDCHCGAAGCRRK 251 (368)
Q Consensus 181 a~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~---------~~~C~Cgs~~Crg~ 251 (368)
+...|+.+||+||||.||+......+.|..++.++|+|||.+|||||+||+...+.. .+.|.|++..|+++
T Consensus 399 ~~~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 399 SQKAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred hhhcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 999999999999999999999777676677899999999999999999999776542 36899999999998
Q ss_pred cC
Q 017646 252 LG 253 (368)
Q Consensus 252 l~ 253 (368)
+.
T Consensus 479 ~~ 480 (480)
T COG2940 479 MS 480 (480)
T ss_pred CC
Confidence 63
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.65 E-value=2e-16 Score=135.69 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=72.6
Q ss_pred CcEEEecccCCCCcEEEEEcceeechhhHHHH-------------------H-----------------HHhh---hc--
Q 017646 125 GAGIVADEDIKRGEFVIEYVGEVIDDQTCEER-------------------L-----------------WKMK---HL-- 163 (368)
Q Consensus 125 G~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r-------------------~-----------------~~~~---~~-- 163 (368)
|+||||+++|++|++|+...+.+++....... . .... ..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999887665331 0 0000 00
Q ss_pred -C-------------CcceeEeeecccccccccccCCccccccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEe
Q 017646 164 -G-------------ETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYD 229 (368)
Q Consensus 164 -~-------------~~~~y~~~~~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~d 229 (368)
. ...............++.....++.|+||||.|||.+..........+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 0 00011111122334555666788999999999999887766566789999999999999999999
Q ss_pred cC
Q 017646 230 YQ 231 (368)
Q Consensus 230 Y~ 231 (368)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.47 E-value=1.1e-14 Score=148.57 Aligned_cols=155 Identities=40% Similarity=0.759 Sum_probs=133.3
Q ss_pred cceeeeCC-CCCCCCCCCCCccCccCCcccEEEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCC
Q 017646 87 GMLLSSCS-SGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGE 165 (368)
Q Consensus 87 ~~~~~eC~-~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~ 165 (368)
.+..++|. ..|.+...|.|+.+....... +.+ +|..+|.+| +|++++..+...++........
T Consensus 286 ~~~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~ 349 (463)
T KOG1081|consen 286 KMLAYEVHPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG------VGEVIDDKECKARLQRVKESDL 349 (463)
T ss_pred Hhhhhhhcccccccccccccchhhhhcccc------cch----hhHHhhhcc------cCcccchhhheeehhhhhccch
Confidence 44566665 579999999999886655444 222 888999998 9999999999988888777777
Q ss_pred cceeEeeecccccccccccCCccccccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCCCCCCCCceeecCC
Q 017646 166 TNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGA 245 (368)
Q Consensus 166 ~~~y~~~~~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~~~C~Cgs 245 (368)
..+|+..+..+..||+...||.+||+||||+||+...+|.+.+..+++++|.+.|++|+||||+|+....+....|.|++
T Consensus 350 ~~~~~~~~e~~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~~~~~~~~~~ 429 (463)
T KOG1081|consen 350 VDFYMVFIQKDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEGNEKRCCCGS 429 (463)
T ss_pred hhhhhhhhhcccccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeeccccCCcceEeecc
Confidence 77776666666699999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCCccccCCCCC
Q 017646 246 AGCRRKLGAKPS 257 (368)
Q Consensus 246 ~~Crg~l~~~~~ 257 (368)
.+|.++++.+..
T Consensus 430 e~~~~~~~k~~~ 441 (463)
T KOG1081|consen 430 ENCTETKGKKKK 441 (463)
T ss_pred cccccCCccccc
Confidence 999999887643
No 12
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=99.45 E-value=1.8e-13 Score=98.19 Aligned_cols=46 Identities=28% Similarity=0.593 Sum_probs=39.0
Q ss_pred cceEEEeeecCCceee-EEEeeeeCCCCeEEEEeecCceeEEeccccce
Q 017646 316 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAKVDW 363 (368)
Q Consensus 316 vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~e~~~l~~e~~ 363 (368)
+|++|++|||.|..|| |.|.+||+.+++|+|+|+||++ |+|++.+.
T Consensus 8 ~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte--l~lke~di 54 (55)
T PF09465_consen 8 IGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE--LELKENDI 54 (55)
T ss_dssp SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E--EEEECCCE
T ss_pred CCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE--EEeccccc
Confidence 8999999999999999 9999999999999999999998 77777664
No 13
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=99.28 E-value=3.1e-12 Score=123.62 Aligned_cols=125 Identities=26% Similarity=0.386 Sum_probs=91.6
Q ss_pred cCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcceeEeeecccccccccccCCccccccCCCCCCcce
Q 017646 122 EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEM 201 (368)
Q Consensus 122 ~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~~~~~~~IDa~~~Gn~aRfINHSC~PN~~~ 201 (368)
...|--|+|++.+.+|+-|-..+|-|+.-.+++++..... +...|-.|-.... --|...=..|+||||.|.|||.+
T Consensus 135 ~~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~--g~nDFSvmyStRk--~caqLwLGPaafINHDCrpnCkF 210 (453)
T KOG2589|consen 135 SQNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRG--GGNDFSVMYSTRK--RCAQLWLGPAAFINHDCRPNCKF 210 (453)
T ss_pred cCCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhc--cCCceeeeeeccc--chhhheeccHHhhcCCCCCCcee
Confidence 3568899999999999999999999977666666632222 2222211111110 11223345899999999999977
Q ss_pred eEEEECCeEEEEEEEccCCCCCCeEEEecCCCCCCCC-ceeecCCCCCccccC
Q 017646 202 QKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGAD-QDCHCGAAGCRRKLG 253 (368)
Q Consensus 202 ~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~-~~C~Cgs~~Crg~l~ 253 (368)
...|..++.|.++|||+||||||-.|+..+||.. ..|.|-+..-+|.-+
T Consensus 211 ---vs~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCER~g~ga 260 (453)
T KOG2589|consen 211 ---VSTGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCERRGTGA 260 (453)
T ss_pred ---ecCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEeecccccccc
Confidence 3456688999999999999999999999999875 689998888887644
No 14
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=99.25 E-value=2.4e-12 Score=91.86 Aligned_cols=50 Identities=42% Similarity=0.917 Sum_probs=45.5
Q ss_pred CCccccccCCCCCCCCCCCCCCccceeeeCCCCCCCCCCCCCccCccCCc
Q 017646 64 DGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPV 113 (368)
Q Consensus 64 ~~~~C~C~~~~~~~~~C~~~C~c~~~~~eC~~~C~C~~~C~Nr~~q~~~~ 113 (368)
+.+.|+|++.+++..+|+++|+||++++||++.|+||..|+||+||++.+
T Consensus 2 e~~~C~C~~~~~~~~~CgsdClNR~l~~EC~~~C~~G~~C~NqrFqk~~y 51 (51)
T smart00570 2 DIMTCECKPTDDDEGACGSDCLNRMLLIECSSDCPCGSYCSNQRFQKRQY 51 (51)
T ss_pred CCceeeCccCCCCCCCcchHHHHHHHhhhcCCCCCCCcCccCcccccCcC
Confidence 56889999987667899999999999999998999999999999998753
No 15
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.57 E-value=4.8e-08 Score=100.15 Aligned_cols=258 Identities=25% Similarity=0.199 Sum_probs=196.1
Q ss_pred CCcCccCCchhhHHHHHHHHHHhhCCCeEEeCCCCCCCCCCCCcEEccceeeccccccccCCCCCccccccCCC-C-CCC
Q 017646 1 MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASP-G-SSG 78 (368)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~lp~~~~~~~p~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~-~-~~~ 78 (368)
|+..+|+++.+.+...+.++.....+...++.|....+..+ ..|.++++.+..+.........+|++..+. . ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~n---~~i~~~v~~~~~~~~~~~~~~~g~~~~~s~p~~~~~ 77 (463)
T KOG1081|consen 1 MSKFKKHSDRNQIPQHDLKCPSHNQESCSLETPPGSAPLGN---LKITRTVRLGKDLFESDACGGIGGSVSASEPNHVSP 77 (463)
T ss_pred CCcccccccccccchhhcccccccccccccCCCccccccCC---ceeeeeeecCcChhhcccccccccccccCCccccCC
Confidence 78899999999999999999999999888888888877666 788899998777767777788899998862 2 235
Q ss_pred CCCCCCCccceeeeCCCCCCCCCCCCCccCccCCcccEEEEEecCCCcE---EEecccCCCCcEEEEEcceeechh--hH
Q 017646 79 VCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAG---IVADEDIKRGEFVIEYVGEVIDDQ--TC 153 (368)
Q Consensus 79 ~C~~~C~c~~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~G---lfA~~~I~~G~~I~ey~Gevi~~~--e~ 153 (368)
.|+..+.+....-+|...+.++..+.+...+......-.-+..+..+++ ..|.+.+..|++|..++|++.-.. .+
T Consensus 78 ~~~~~~~~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc 157 (463)
T KOG1081|consen 78 EPGSRRHPKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVC 157 (463)
T ss_pred CCCchhccCCCcchhccccCCCccceeccccccccccCcCccCcccccCCcceeeeccccceeEEeEEcCccccccccee
Confidence 6888888888888888777777666655555444444444556677777 888889999999999999986544 22
Q ss_pred HHHHHHhhhcC-CcceeEeeecccccccccccCCccccccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCe------E
Q 017646 154 EERLWKMKHLG-ETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGEN------L 226 (368)
Q Consensus 154 ~~r~~~~~~~~-~~~~y~~~~~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEE------L 226 (368)
..+........ ...+|....-.....++...|+..++++|++.|+-.+..+......++..++.+.++.+.. .
T Consensus 158 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~ 237 (463)
T KOG1081|consen 158 HDPLLPKGMKHDHVNFFGCYAWTHEKRVFPYEGQSSKLIPHSKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEE 237 (463)
T ss_pred cCcccchhhccccceeccchhhHHHhhhhhccchHHHhhhhccccchhhhhhhhcccchhhhcccchhhccchhhccccc
Confidence 22222211111 2333333122234455555999999999999999999999999999999999999988887 8
Q ss_pred EEecCCCCCCCCceeecCCCCCccccCCCCCCCCC
Q 017646 227 TYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKI 261 (368)
Q Consensus 227 T~dY~~~~~~~~~~C~Cgs~~Crg~l~~~~~~~~~ 261 (368)
+.+|....+...+.+.+.+..|...+...+.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 272 (463)
T KOG1081|consen 238 YKRIKVVCPIGDQQIYSAAVSCIKKLLAKPTDEKP 272 (463)
T ss_pred ccccccccCcCcccccchhhhhhhhcccccccccc
Confidence 88888888877888999999999999888776654
No 16
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=98.53 E-value=3.8e-08 Score=80.62 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=44.2
Q ss_pred HHhhCCCeEEeCCCCCCCC-CCCCcEEccceeeccccccccCCCCCccccccCCCCCCCCCCCCCCc-------------
Q 017646 21 LKQIGNPVEFELPDWFIKP-KAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHC------------- 86 (368)
Q Consensus 21 ~~~~~~~~~f~lp~~~~~~-~p~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~~C~c------------- 86 (368)
|+...|..++.+-+..+.. .|+.|+||.++++..... ........+|+|...+... .+|.|
T Consensus 2 is~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~-~~~~~~~~~C~C~~~C~~~----~~C~C~~~~~~~~~Y~~~ 76 (103)
T PF05033_consen 2 ISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVP-DIDPEFLQGCDCSGDCSNP----SNCECLQRNGGIFAYDSN 76 (103)
T ss_dssp TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS--TBGGGTS----SSSSTCT----TTSHHHCCTSSS-SB-TT
T ss_pred CCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCcc-ccccccCccCccCCCCCCC----CCCcCccccCccccccCC
Confidence 3455677777765555443 469999999999976543 3344456789998755222 23332
Q ss_pred -------cceeeeCCCCCCCCCCCCCc
Q 017646 87 -------GMLLSSCSSGCKCGNSCLNK 106 (368)
Q Consensus 87 -------~~~~~eC~~~C~C~~~C~Nr 106 (368)
..+++||++.|.|+..|.||
T Consensus 77 g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 77 GRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp SSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred CcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 23589999999999999997
No 17
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.16 E-value=1.9e-06 Score=86.67 Aligned_cols=110 Identities=24% Similarity=0.254 Sum_probs=80.4
Q ss_pred CcccEEEEEe--cCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhhhcCCcceeEeee---c-cccccccc--c
Q 017646 112 PVKKMKLVQT--EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEI---N-RDMVIDAT--Y 183 (368)
Q Consensus 112 ~~~~l~v~~s--~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~~---~-~~~~IDa~--~ 183 (368)
....+.|..+ +..|.||++...|++|+--+-|.|+++... ......+.|+..+ + .-++||++ .
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~---------~~~~~n~~y~W~I~~~d~~~~~iDg~d~~ 96 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASI---------DSKSANNRYMWEIFSSDNGYEYIDGTDEE 96 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccc---------ccccccCcceEEEEeCCCceEEeccCChh
Confidence 3456788875 677899999999999999999999982211 1112223344433 2 33789987 5
Q ss_pred cCCccccccCCCCC---CcceeEEEECCeEEEEEEEccCCCCCCeEEEecCCCC
Q 017646 184 KGNKSRYINHSCCP---NTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQ 234 (368)
Q Consensus 184 ~Gn~aRfINHSC~P---N~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~ 234 (368)
..|+.||||=+++. |+.. +.....|.++|+|+|.+||||.+.|+.++
T Consensus 97 ~sNWmRYV~~Ar~~eeQNL~A----~Q~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 97 HSNWMRYVNSARSEEEQNLLA----FQIGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred hcceeeeecccCChhhhhHHH----HhccCceEEEecccCCCCCeEEEEeccch
Confidence 58999999988865 6644 22345788999999999999999998655
No 18
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=97.83 E-value=1.8e-05 Score=64.32 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=40.7
Q ss_pred HHHhhCCCeEEeCCCCCCC-CCCCCcEEccceeeccccccccCCCCCccccccCCCCC
Q 017646 20 LLKQIGNPVEFELPDWFIK-PKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGS 76 (368)
Q Consensus 20 l~~~~~~~~~f~lp~~~~~-~~p~~f~~i~~n~~~~~~~~~~~~~~~~~C~C~~~~~~ 76 (368)
.|+...|.+++.+-+.++. ..|+.|+||.++++..............+|+|...|..
T Consensus 3 Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~ 60 (98)
T smart00468 3 DISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSS 60 (98)
T ss_pred cccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCC
Confidence 3566778888887776754 45699999999998665322345567789999986543
No 19
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.41 E-value=0.00037 Score=50.49 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=38.8
Q ss_pred ccceEEEeeecCCceee-EEEeeeeCCCCeEEEEeec-CceeEEecc
Q 017646 315 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMA 359 (368)
Q Consensus 315 ~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~d-g~~e~~~l~ 359 (368)
-+|..+.+.| .|..|| |.|.++++. +...|.|.| |..|.+.+.
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 999999 999999998 889999988 999988754
No 20
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.29 E-value=0.00068 Score=47.32 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=37.7
Q ss_pred ceEEEeeecCCceee-EEEeeeeCCCCeEEEEeec-CceeEEecc
Q 017646 317 GKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMA 359 (368)
Q Consensus 317 g~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~d-g~~e~~~l~ 359 (368)
|..+-+.|+.|..|| |+|.+.++ +..-+|.|.| |.+|.+.++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 677889999999999 99999998 7788899988 999998865
No 21
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.05 E-value=0.0016 Score=47.96 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=37.6
Q ss_pred ccceEEEeeecCCceee-EEEeeeeCCCCeEEEEeec---CceeEEecc
Q 017646 315 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED---GESEFIDMA 359 (368)
Q Consensus 315 ~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~d---g~~e~~~l~ 359 (368)
.+|..|-|+|+.|..|| |+|..++. .+++.|.|.+ |.+|.+..+
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~ 51 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWS 51 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHH
Confidence 48999999999999999 99999998 7789999977 556666543
No 22
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=96.78 E-value=0.0031 Score=52.94 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=33.7
Q ss_pred ccccceEEEeeecCCceee-EEEeeeeCCCCeEEEEeecCcee
Q 017646 313 QCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESE 354 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~e 354 (368)
..+||.||-.-|-.+.-|| |.|.. |....|.+|+||||.+-
T Consensus 2 ~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~ 43 (122)
T PF09038_consen 2 SSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYEC 43 (122)
T ss_dssp --STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EE
T ss_pred CcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccc
Confidence 3689999999999777788 99999 68999999999999874
No 23
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.29 E-value=0.002 Score=39.60 Aligned_cols=18 Identities=50% Similarity=1.008 Sum_probs=15.6
Q ss_pred CceeecCCCCCccccCCC
Q 017646 238 DQDCHCGAAGCRRKLGAK 255 (368)
Q Consensus 238 ~~~C~Cgs~~Crg~l~~~ 255 (368)
.+.|+||+++|||+|+..
T Consensus 2 ~~~C~CGs~~CRG~l~~~ 19 (26)
T smart00508 2 KQPCLCGAPNCRGFLGXX 19 (26)
T ss_pred CeeeeCCCccccceeccc
Confidence 478999999999999654
No 24
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.14 E-value=0.0097 Score=63.82 Aligned_cols=163 Identities=33% Similarity=0.561 Sum_probs=125.6
Q ss_pred eeeCCCCCCCCCCCCCccCccCCcccE--------EEEEecCCCcEEEecccCCCCcEEEEEcceeechhhHHHHHHHhh
Q 017646 90 LSSCSSGCKCGNSCLNKPFQNRPVKKM--------KLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMK 161 (368)
Q Consensus 90 ~~eC~~~C~C~~~C~Nr~~q~~~~~~l--------~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~ 161 (368)
+++|+..|.|...|.|+++|++...++ .|+.+...|||+.+..||+.-+||++|+|...+..-+.+....+.
T Consensus 981 f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqa 1060 (1262)
T KOG1141|consen 981 FFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQA 1060 (1262)
T ss_pred ceeccccchhcccccchhhhcCCccceeeeecccccccccccccccccccccCCCCcccccccCCCCchhhHHHHhhhhh
Confidence 778999999999999999998876654 456677889999999999999999999999875543321100000
Q ss_pred h-------------------------cCC---------------------------------------------------
Q 017646 162 H-------------------------LGE--------------------------------------------------- 165 (368)
Q Consensus 162 ~-------------------------~~~--------------------------------------------------- 165 (368)
. .+.
T Consensus 1061 d~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~ 1140 (1262)
T KOG1141|consen 1061 DQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKG 1140 (1262)
T ss_pred ccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcccC
Confidence 0 000
Q ss_pred --------cceeEeeec-------------------ccccccccccCCccccccCCCCCCcceeEEEECCe----EEEEE
Q 017646 166 --------TNFYLCEIN-------------------RDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGI 214 (368)
Q Consensus 166 --------~~~y~~~~~-------------------~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~----~ri~i 214 (368)
...-++..+ .-++|||..-||++||+||||+||+.++.|+++.+ |.++|
T Consensus 1141 ~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAF 1220 (1262)
T KOG1141|consen 1141 GSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAF 1220 (1262)
T ss_pred ccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhh
Confidence 000001111 11789999999999999999999999999999864 67999
Q ss_pred EEccCCCCCCeEEEecCCCCCC---CCceeecCCCCCcccc
Q 017646 215 FATRDIKKGENLTYDYQFVQFG---ADQDCHCGAAGCRRKL 252 (368)
Q Consensus 215 ~A~RdI~~GEELT~dY~~~~~~---~~~~C~Cgs~~Crg~l 252 (368)
||.|-|++|+|||+||++..-. ....|.||+.+|||.|
T Consensus 1221 Ft~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1221 FTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred hhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence 9999999999999999987642 3468999999999976
No 25
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=90.90 E-value=0.42 Score=48.46 Aligned_cols=43 Identities=35% Similarity=0.616 Sum_probs=30.6
Q ss_pred cccCCCCCCcceeEEEECCeEEEEEEEccCCCCCC-eEEEecCCCCCC
Q 017646 190 YINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGE-NLTYDYQFVQFG 236 (368)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GE-ELT~dY~~~~~~ 236 (368)
++||||.||+. ...++. ...+.+..++.+++ ||+..|....++
T Consensus 208 ~~~hsC~pn~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGR-GLALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeE---EEECCc-eeEEEeecccCCCCCEEEEeecccccC
Confidence 78999999997 234433 34456667777776 999999765543
No 26
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=90.57 E-value=0.1 Score=49.80 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=34.2
Q ss_pred CCCCCcccccceEEEeeecCCceee-EEEeeeeCCCCeEEEE
Q 017646 307 QRQICPQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVL 347 (368)
Q Consensus 307 ~~~~~~~~~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~ 347 (368)
-...-++.+||++|-.-||.+..|| ++|..||..+..|+.+
T Consensus 152 ~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l 193 (273)
T KOG4675|consen 152 WGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLL 193 (273)
T ss_pred cccCCchhhccccccccCcccccccccccccchhhhhhhhhc
Confidence 3455667799999999999999999 9999988777766655
No 27
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=89.90 E-value=0.82 Score=43.93 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=38.7
Q ss_pred ccccceEEEeeecCCceee-EEEeeeeCCCCeEEEEeec-CceeEEeccc
Q 017646 313 QCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMAK 360 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~d-g~~e~~~l~~ 360 (368)
.-=||-+++.-|-.|..|| ++|.+.|...+.-.|.|++ |.+|++.|..
T Consensus 68 ~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 68 KWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp ---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 3459999999999999999 9999999999999999954 7888887763
No 28
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=84.75 E-value=0.66 Score=48.12 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=30.3
Q ss_pred cccCCCCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCC
Q 017646 190 YINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQF 232 (368)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~ 232 (368)
+.||++.+.. ..+......+.+++.++|.+||||+++||.
T Consensus 239 ~~NH~~~~~~---~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVIK---AGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhcc---ccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 7899999922 112222238889999999999999999985
No 29
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.51 E-value=0.062 Score=61.39 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=53.4
Q ss_pred CCCcccccceEEEeeecCCceee-E-EEeeeeCCCCeEEEEeecCceeEEeccccceEec
Q 017646 309 QICPQCCIGKVIRISHPKNESSF-G-IIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELV 366 (368)
Q Consensus 309 ~~~~~~~vg~~~~~~~~~d~~~~-g-~v~~~~~~~~~h~~~y~dg~~e~~~l~~e~~~~~ 366 (368)
.....++||.++..|||.|..|+ | .|.+++.....|.++|++++.|..++....|+..
T Consensus 982 ~~~~~e~V~~~~~~~la~d~~~~~~edv~~l~~~ke~~~~vl~~l~~~~~n~~~~~~~~~ 1041 (1266)
T KOG1525|consen 982 LAHLPEYVGSYVIHLLAHDPDFVKAEDVDSLSDLKECLWFVLEDLDEENENNQHKFWKRE 1041 (1266)
T ss_pred hhhhhHHhhhhhhhhhccCccccccchhhhHHHHHHhHHHHHhhhhhhhccchhHHHHHH
Confidence 45778899999999999999999 7 8999999999999999999999999999998753
No 30
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=80.70 E-value=3.8 Score=34.79 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=35.8
Q ss_pred ceEEEeeecCCceee-EEEeeeeCCCCeEEEEeecCceeEEec
Q 017646 317 GKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDM 358 (368)
Q Consensus 317 g~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~e~~~l 358 (368)
|.+|=.-|+.|.-|| |+|++.- ..+.-.|-|++|+++.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 678888999999999 9999998 7888889999999887654
No 31
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=80.05 E-value=6.3 Score=31.54 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=38.0
Q ss_pred cceEEEeeecCCceee-EEEeeeeCCCCeEEEEe-ecCceeEEeccc
Q 017646 316 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFIDMAK 360 (368)
Q Consensus 316 vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y-~dg~~e~~~l~~ 360 (368)
+|...-+.-+.|.+|| |+| .-+...+.-+|.| |-|.++.+..++
T Consensus 54 ~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~~ 99 (121)
T PF00567_consen 54 PGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSASD 99 (121)
T ss_dssp TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHHH
Confidence 7777888889999999 999 8888888999999 999999977653
No 32
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=69.03 E-value=8.9 Score=32.96 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=27.6
Q ss_pred EeeecCCceee-EEEeeeeCCCCeEEEEeecCcee
Q 017646 321 RISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESE 354 (368)
Q Consensus 321 ~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~e 354 (368)
.||=--+..|| |++.+.+....+-.|.||||..|
T Consensus 15 avW~~~~~~yYPa~~~~~~~~~~~~~V~Fedg~~~ 49 (131)
T PF08605_consen 15 AVWAGYNLKYYPATCVGSGVDRDRSLVRFEDGTYE 49 (131)
T ss_pred ceeecCCCeEeeEEEEeecCCCCeEEEEEecCceE
Confidence 35544577899 99999988887899999999944
No 33
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=61.23 E-value=28 Score=27.12 Aligned_cols=41 Identities=32% Similarity=0.360 Sum_probs=31.9
Q ss_pred EEEeeecCCceee-EEEeeeeCCCCeEEEEeecCceeEEecc
Q 017646 319 VIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMA 359 (368)
Q Consensus 319 ~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~e~~~l~ 359 (368)
+|.+|-...-.-+ |.|..+|+.++.=.|.-++|+.+.+.|.
T Consensus 46 ~ity~~~g~~~~~~G~I~~id~~~~~l~~~~~~~~~~~I~~~ 87 (92)
T PF08863_consen 46 TITYYEDGYYQSVTGTIHKIDEINRTLKLKDEDGETEKIPFD 87 (92)
T ss_pred EEEEEECCeeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEhh
Confidence 5666665544555 9999999999887777777999888775
No 34
>cd01735 LSm12_N LSm12 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm12 has a novel methyltransferase domain.
Probab=59.54 E-value=38 Score=25.23 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=28.8
Q ss_pred ccceEEEeeecCCceeeEEEeeeeCCCCeEEEE
Q 017646 315 CIGKVIRISHPKNESSFGIIRRFDEYSRKHSVL 347 (368)
Q Consensus 315 ~vg~~~~~~~~~d~~~~g~v~~~~~~~~~h~~~ 347 (368)
-||++|++-=..+..+-|.|..||..+++=.+.
T Consensus 4 ~iGs~V~~kTc~g~~ieGEV~afD~~tk~lIlk 36 (61)
T cd01735 4 SVGSQVSCRTCFEQRLQGEVVAFDYPSKMLILK 36 (61)
T ss_pred ccccEEEEEecCCceEEEEEEEecCCCcEEEEE
Confidence 489999999999998669999999998887665
No 35
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=58.56 E-value=6 Score=27.23 Aligned_cols=37 Identities=32% Similarity=0.772 Sum_probs=29.0
Q ss_pred CccccccCCCCCCCCC-CCCCCccceeeeCCCCCCCCCCCCCcc
Q 017646 65 GIFCSCTASPGSSGVC-DRDCHCGMLLSSCSSGCKCGNSCLNKP 107 (368)
Q Consensus 65 ~~~C~C~~~~~~~~~C-~~~C~c~~~~~eC~~~C~C~~~C~Nr~ 107 (368)
..+|+|+.+ .| -..|.|......|++.|.| ..|.|..
T Consensus 3 ~~gC~Ckks-----~Clk~YC~Cf~~g~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKKS-----KCLKLYCECFQAGRFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCCcccCc-----ChhhhhCHHHHCcCcCCCCccc-CCCCCcC
Confidence 456888863 46 3468899999999999999 7888864
No 36
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=57.52 E-value=6.4 Score=28.40 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=11.4
Q ss_pred EEEEccCCCCCCeEE
Q 017646 213 GIFATRDIKKGENLT 227 (368)
Q Consensus 213 ~i~A~RdI~~GEELT 227 (368)
.++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 478999999999995
No 37
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.09 E-value=7.9 Score=39.20 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=30.6
Q ss_pred ccccccCC---CCCCcceeEEEECCeEEEEEEEccCCCCCCeEEEecCC
Q 017646 187 KSRYINHS---CCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQF 232 (368)
Q Consensus 187 ~aRfINHS---C~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~ 232 (368)
++-|+||- |+.|..+ +...+-++|.|+|++|+|+.-.||.
T Consensus 218 ~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg~ 260 (466)
T KOG1338|consen 218 IADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDGL 260 (466)
T ss_pred hhhhhccchhhcccceec------cCcceeeeecCCCCCcccccccccc
Confidence 56799994 6666543 2345677999999999999999973
No 38
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=53.86 E-value=17 Score=26.23 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=24.7
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
++++|++|+|-=-.++.|-|++.+||....
T Consensus 2 ~~~~g~~V~V~l~~g~~~~G~L~~~D~~~N 31 (63)
T cd00600 2 KDLVGKTVRVELKDGRVLEGVLVAFDKYMN 31 (63)
T ss_pred hHHCCCEEEEEECCCcEEEEEEEEECCCCC
Confidence 467999999988877776699999997753
No 39
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=51.83 E-value=19 Score=26.45 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=25.0
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
++++|++|+|---.+..+.|++.+||..-.
T Consensus 4 ~~~~g~~V~V~l~~g~~~~G~L~~~D~~~N 33 (67)
T PF01423_consen 4 QKLIGKRVRVELKNGRTYRGTLVSFDQFMN 33 (67)
T ss_dssp HHTTTSEEEEEETTSEEEEEEEEEEETTEE
T ss_pred HHhCCcEEEEEEeCCEEEEEEEEEeechhe
Confidence 467999999998888776699999998654
No 40
>PRK00737 small nuclear ribonucleoprotein; Provisional
Probab=51.02 E-value=23 Score=26.86 Aligned_cols=32 Identities=6% Similarity=0.031 Sum_probs=26.1
Q ss_pred cccccceEEEeeecCCceeeEEEeeeeCCCCe
Q 017646 312 PQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 343 (368)
Q Consensus 312 ~~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~ 343 (368)
..+++|++|.|.=-.++.|.|++++||..-..
T Consensus 9 L~~~~~k~V~V~lk~g~~~~G~L~~~D~~mNl 40 (72)
T PRK00737 9 LNNALNSPVLVRLKGGREFRGELQGYDIHMNL 40 (72)
T ss_pred HHHhCCCEEEEEECCCCEEEEEEEEEccccee
Confidence 45679999999988777766999999986553
No 41
>PF02067 Metallothio_5: Metallothionein family 5; InterPro: IPR000966 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ] species, including sea urchins, fungi, insects and cyanobacteria. Class III MTs are atypical polypeptides composed of gamma-glutamylcysteinyl units. This original classification system has been found to be limited, in the sense that it does not allow clear differentiation of patterns of structural similarities, either between or within classes. Consequently, all class I and class I MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. Diptera (Drosophila, family 5) MTs are 40-43 residue proteins that contain 10 conserved cysteines arranged in five Cys-X-Cys groups. In particular, the consensus pattern C-G-x(2)-C-x-C-x(2)-Q-x(5)-C-x-C-x(2)-D-C-x-C has been found to be diagnostic of family 5 MTs. The protein is found primarily in the alimentary canal, and its induction is stimulated by ingestion of cadmium or copper []. Mercury, silver and zinc induce the protein to a lesser extent. Family 5 includes subfamilies: d1, d2. Only one d2 is known until now. Subfamilies hit the same entry.; GO: 0046872 metal ion binding
Probab=50.85 E-value=12 Score=25.59 Aligned_cols=22 Identities=32% Similarity=1.224 Sum_probs=11.2
Q ss_pred CCCCCCccceeeeCCCCCCCCCCC
Q 017646 80 CDRDCHCGMLLSSCSSGCKCGNSC 103 (368)
Q Consensus 80 C~~~C~c~~~~~eC~~~C~C~~~C 103 (368)
|+.+|.|...- |+.+|.|+..|
T Consensus 6 Cg~~CkC~~~k--cg~~C~C~~dC 27 (41)
T PF02067_consen 6 CGTNCKCSSQK--CGGNCACNQDC 27 (41)
T ss_pred cCCCCEecCCc--cCCCccCCCCc
Confidence 55555554332 55555555443
No 42
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=50.52 E-value=19 Score=27.88 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=26.0
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCCe
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSRK 343 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~ 343 (368)
..++|++|.|.-...+.+.|+.++||.....
T Consensus 6 ~~~l~~~V~V~l~dgR~~~G~L~~~D~~~Nl 36 (79)
T cd01717 6 LQLINYRLRVTLQDGRQFVGQFLAFDKHMNL 36 (79)
T ss_pred HHHcCCEEEEEECCCcEEEEEEEEEcCccCE
Confidence 4579999999998887766999999987653
No 43
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=50.04 E-value=26 Score=26.19 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=26.1
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCCeE
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSRKH 344 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~h 344 (368)
..++|++|.|-=-.++.|.|++++||..-..+
T Consensus 6 ~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlv 37 (68)
T cd01731 6 KDSLNKPVLVKLKGGKEVRGRLKSYDQHMNLV 37 (68)
T ss_pred HHhcCCEEEEEECCCCEEEEEEEEECCcceEE
Confidence 45699999998888777669999999976643
No 44
>KOG1775 consensus U6 snRNA-associated Sm-like protein [RNA processing and modification]
Probab=45.85 E-value=16 Score=28.34 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=27.3
Q ss_pred cccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 312 PQCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 312 ~~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
-+.|||++|-|-...|+.+.|+...||.+-.
T Consensus 12 iDkcIgski~iimksdkE~~GtL~GFDd~VN 42 (84)
T KOG1775|consen 12 IDKCIGSKIWIIMKSDKEFVGTLVGFDDFVN 42 (84)
T ss_pred HHHhcCceEEEEEccCceeeeEEechHHHHH
Confidence 4578999999999999998899999997654
No 45
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=44.72 E-value=36 Score=25.95 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=26.4
Q ss_pred CCcccccceEEEeeecCCceeeEEEeeeeCCCCe
Q 017646 310 ICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 343 (368)
Q Consensus 310 ~~~~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~ 343 (368)
..-.+++|++|.|---..+.+.|+..+||.....
T Consensus 3 ~~L~~~i~k~V~V~L~~g~~~~G~L~~~D~~mNl 36 (72)
T cd01719 3 PELKKYMDKKLSLKLNGNRKVSGILRGFDPFMNL 36 (72)
T ss_pred hhhHHhCCCeEEEEECCCeEEEEEEEEEcccccE
Confidence 3456789999999877666655999999977653
No 46
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
Probab=44.23 E-value=29 Score=26.69 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.4
Q ss_pred CcccccceEEEeeecCCceeeEEEeeeeCCCCeE
Q 017646 311 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKH 344 (368)
Q Consensus 311 ~~~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~h 344 (368)
.-.+++|++|.|+=-.++.|.|+.++||..-..+
T Consensus 11 ~l~~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlv 44 (79)
T COG1958 11 FLKKLLNKRVLVKLKNGREYRGTLVGFDQYMNLV 44 (79)
T ss_pred HHHHhhCCEEEEEECCCCEEEEEEEEEccceeEE
Confidence 3456799999999999988779999999987754
No 47
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=44.07 E-value=27 Score=38.67 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=34.3
Q ss_pred cceEEEeeecCC----ceee-EEEeeeeCCCC--------eEEEEeecCceeEEec
Q 017646 316 IGKVIRISHPKN----ESSF-GIIRRFDEYSR--------KHSVLFEDGESEFIDM 358 (368)
Q Consensus 316 vg~~~~~~~~~d----~~~~-g~v~~~~~~~~--------~h~~~y~dg~~e~~~l 358 (368)
++-+.||||..- .+|. |.|.+--+++- ...|.||.+++|.+.-
T Consensus 981 ~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~sp 1036 (1113)
T KOG0644|consen 981 CRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHSP 1036 (1113)
T ss_pred cccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccCc
Confidence 467899999863 4566 99998877764 7899999999988764
No 48
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=42.44 E-value=32 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=25.7
Q ss_pred cccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 312 PQCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 312 ~~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
..+++|++|.|-=..+..+.|++.+||+.-.
T Consensus 3 L~~~~~~~V~V~l~~g~~~~G~L~~~D~~~N 33 (67)
T smart00651 3 LKKLIGKRVLVELKNGREYRGTLKGFDQFMN 33 (67)
T ss_pred hHHhCCcEEEEEECCCcEEEEEEEEECcccc
Confidence 3578999999998887776699999998755
No 49
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=42.42 E-value=10 Score=40.72 Aligned_cols=29 Identities=28% Similarity=0.624 Sum_probs=24.0
Q ss_pred CCCCCCCccceeeeCCCCCCCCCCCCCcc
Q 017646 79 VCDRDCHCGMLLSSCSSGCKCGNSCLNKP 107 (368)
Q Consensus 79 ~C~~~C~c~~~~~eC~~~C~C~~~C~Nr~ 107 (368)
.|+.+|.|..--.-|..-|.|...|+||.
T Consensus 511 ~c~~~C~C~~n~~~CEk~C~C~~dC~nrF 539 (739)
T KOG1079|consen 511 NCGVGCPCIDNETFCEKFCYCSPDCRNRF 539 (739)
T ss_pred CCCCCCcccccCcchhhcccCCHHHHhcC
Confidence 37888999888888888888888888874
No 50
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=41.71 E-value=15 Score=30.48 Aligned_cols=17 Identities=59% Similarity=0.860 Sum_probs=12.9
Q ss_pred EEEEEccCCCCCCeEEE
Q 017646 212 IGIFATRDIKKGENLTY 228 (368)
Q Consensus 212 i~i~A~RdI~~GEELT~ 228 (368)
.+|||+|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 37899999999998883
No 51
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=40.90 E-value=35 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=23.6
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
.++++++|+|---.++.|.|+.++||....
T Consensus 5 ~~~l~~~V~V~l~dgr~~~G~L~~~D~~~N 34 (74)
T cd01727 5 EDYLNKTVSVITVDGRVIVGTLKGFDQATN 34 (74)
T ss_pred HHhcCCEEEEEECCCcEEEEEEEEEccccC
Confidence 456999999977666665599999999754
No 52
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=40.40 E-value=69 Score=27.91 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=30.3
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCCeEEEEeecCceeE
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEF 355 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~h~~~y~dg~~e~ 355 (368)
-.|||+.|......+...-|+|.+-......-.+..+||+.+.
T Consensus 89 ~~lIGk~V~~~~~~g~~~tG~V~sV~~~~~~~~~~v~d~~~~v 131 (140)
T PRK11911 89 VNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLV 131 (140)
T ss_pred HHhhCceeEEEecCCCEEEEEEEEEEEcCCceEEEEEcCCEEE
Confidence 3689999985555555434999988777777777666666543
No 53
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=39.24 E-value=41 Score=25.05 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=24.7
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
.+++|++|.|---.+..|.|++.+||+.-.
T Consensus 6 ~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mN 35 (67)
T cd01726 6 KAIIGRPVVVKLNSGVDYRGILACLDGYMN 35 (67)
T ss_pred HhhCCCeEEEEECCCCEEEEEEEEEcccee
Confidence 467999999998877775599999997644
No 54
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=37.85 E-value=72 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=24.0
Q ss_pred cceEEEeeecCC---ceee-EEEeeeeCCCCeEEEEeec
Q 017646 316 IGKVIRISHPKN---ESSF-GIIRRFDEYSRKHSVLFED 350 (368)
Q Consensus 316 vg~~~~~~~~~d---~~~~-g~v~~~~~~~~~h~~~y~d 350 (368)
.|..|-|.--.| ..|| |+|.+..... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 477777776443 3699 9999999887 99999953
No 55
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=37.71 E-value=40 Score=25.90 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=24.5
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
+++++++|.|-=-.++.|.|+.++||+...
T Consensus 8 ~~~l~k~v~V~l~~gr~~~G~L~~fD~~~N 37 (74)
T cd01728 8 VDDLDKKVVVLLRDGRKLIGILRSFDQFAN 37 (74)
T ss_pred HHhcCCEEEEEEcCCeEEEEEEEEECCccc
Confidence 456899999998888776699999997643
No 56
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=37.56 E-value=1.2e+02 Score=20.87 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=28.6
Q ss_pred cceEEEeeecCCceeeEEEeeeeCCCCeEEEEeecCceeEE
Q 017646 316 IGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFI 356 (368)
Q Consensus 316 vg~~~~~~~~~d~~~~g~v~~~~~~~~~h~~~y~dg~~e~~ 356 (368)
+|+.|+|.. .|+.+-|++..-|+. +.=.|..+||..+.+
T Consensus 2 lG~~V~v~~-~~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVET-GDGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEE-TSCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEE-CCeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 799999999 555556999999874 555666777755544
No 57
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=36.58 E-value=48 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=25.2
Q ss_pred cccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 312 PQCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 312 ~~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
-.+++|++|.|-=-.+..|.|+..+||..-.
T Consensus 6 L~~~~g~~V~V~Lk~g~~~~G~L~~~D~~mN 36 (68)
T cd01722 6 LNDLTGKPVIVKLKWGMEYKGTLVSVDSYMN 36 (68)
T ss_pred HHHcCCCEEEEEECCCcEEEEEEEEECCCEE
Confidence 3567999999988888776699999997543
No 58
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=35.60 E-value=90 Score=26.67 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.9
Q ss_pred cceEEEeeecCCceee-EEEeee-eCCCCeEEEEeecCcee
Q 017646 316 IGKVIRISHPKNESSF-GIIRRF-DEYSRKHSVLFEDGESE 354 (368)
Q Consensus 316 vg~~~~~~~~~d~~~~-g~v~~~-~~~~~~h~~~y~dg~~e 354 (368)
.|.+|-.-||.--+|| |+|.+- ...++.-+|.|||.+.+
T Consensus 74 ~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~ 114 (130)
T PF07039_consen 74 KGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDA 114 (130)
T ss_dssp TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTST
T ss_pred CCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCc
Confidence 7999999999999999 988887 45677899999776553
No 59
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=33.76 E-value=1e+02 Score=26.32 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=33.0
Q ss_pred cceEEEeeecCCceee-EEEeeeeCCCCeEEEEeecCceeEEeccccceEec
Q 017646 316 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELV 366 (368)
Q Consensus 316 vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~e~~~l~~e~~~~~ 366 (368)
=|..+..-+|.|..-. ..| ..+.++++|.||+ ...=|..|.+|-+
T Consensus 48 tG~~~e~~f~~~~kve~a~i-----e~~~~q~lY~dg~-~~~FMD~etyeq~ 93 (131)
T COG0231 48 TGKKVEKTFKADDKVEVAIV-----ERKTAQYLYIDGD-FYVFMDLETYEQY 93 (131)
T ss_pred CCCEEEEEEcCCCEEEEeEE-----eeeeEEEEEcCCC-eEEEccCCCceEE
Confidence 3777777788877645 566 4789999999999 5556666777654
No 60
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=33.62 E-value=85 Score=26.52 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=32.7
Q ss_pred cceEEEeeecCCce-ee-EEEeee----eCCCCeEEEEeecCceeEEecc
Q 017646 316 IGKVIRISHPKNES-SF-GIIRRF----DEYSRKHSVLFEDGESEFIDMA 359 (368)
Q Consensus 316 vg~~~~~~~~~d~~-~~-g~v~~~----~~~~~~h~~~y~dg~~e~~~l~ 359 (368)
+|-.|=+-||.+.. |+ |+|..- -...+..+|.|=||.++.+...
T Consensus 58 ~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~~~~vp~~ 107 (124)
T PF15057_consen 58 VGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGKTAKVPRG 107 (124)
T ss_pred CCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCCCCccchh
Confidence 66666666877666 55 988865 6678899999999998765443
No 61
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=22 Score=36.61 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=36.1
Q ss_pred CccccccCCCCCCcceeEEEECC--eEEEEEEEccCCCCCCeEEEecCCCC
Q 017646 186 NKSRYINHSCCPNTEMQKWIIDG--ETRIGIFATRDIKKGENLTYDYQFVQ 234 (368)
Q Consensus 186 n~aRfINHSC~PN~~~~~~~~~g--~~ri~i~A~RdI~~GEELT~dY~~~~ 234 (368)
.++.-+.||-.||..+..+..-- -..-.++-+|++..|||+|-|+....
T Consensus 203 efGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg~ 253 (631)
T KOG2155|consen 203 EFGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASGV 253 (631)
T ss_pred hhhhhhccCCCCcceeeeheecchhcceeEEeeccCCCCchHHHHHHhhcC
Confidence 34556899999999887655422 12345788999999999999886543
No 62
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=33.50 E-value=70 Score=25.03 Aligned_cols=16 Identities=44% Similarity=0.362 Sum_probs=14.3
Q ss_pred cEEEecccCCCCcEEE
Q 017646 126 AGIVADEDIKRGEFVI 141 (368)
Q Consensus 126 ~GlfA~~~I~~G~~I~ 141 (368)
..++|+++|++|+=|.
T Consensus 98 ~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 98 IVIFALRDIKPGEELT 113 (116)
T ss_pred EEEEECCCcCCCCEEe
Confidence 7899999999999764
No 63
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed
Probab=32.95 E-value=87 Score=27.28 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=31.3
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCCeEEEEeecCceeEE
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFI 356 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~h~~~y~dg~~e~~ 356 (368)
-.+||+.|.+ .|....|+|+++.-..+......+||.+-.|
T Consensus 93 ~slIGk~V~~---~~~~~~G~V~sV~~~~~~~~~~~~dg~~v~l 133 (140)
T PRK06009 93 EGLIGRTVTS---ADGSITGVVKSVTVYSDGVIATLEDGKKVLL 133 (140)
T ss_pred HHhcCCEEEe---cCCcEEEEEEEEEEeCCceEEEEECCEEEEe
Confidence 3689999985 3444349999999888888888889876544
No 64
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=32.43 E-value=53 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=24.2
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
..++|++|+|---.++.+.|+..+||..-.
T Consensus 8 ~~~i~k~V~V~l~~gr~~~G~L~~~D~~mN 37 (81)
T cd01729 8 SKYVDKKIRVKFQGGREVTGILKGYDQLLN 37 (81)
T ss_pred HHhcCCeEEEEECCCcEEEEEEEEEcCccc
Confidence 456999999988766665599999999765
No 65
>PF14100 PmoA: Methane oxygenase PmoA
Probab=31.73 E-value=52 Score=31.58 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=30.8
Q ss_pred cccCCCCCCcceeEEEECCeEEEEE------EEccCCCCCCeEEEecCCCC
Q 017646 190 YINHSCCPNTEMQKWIIDGETRIGI------FATRDIKKGENLTYDYQFVQ 234 (368)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i------~A~RdI~~GEELT~dY~~~~ 234 (368)
|++|-=+||-- ..|.+.+...+++ ..-..|++||.|++.|....
T Consensus 205 ~~dhP~N~~~P-~~W~vR~~g~~~~~p~~~~~~~~~l~~G~~l~~rYr~~v 254 (271)
T PF14100_consen 205 ILDHPSNPNYP-TPWHVRGYGLFGANPAPAFDGPLTLPPGETLTLRYRVVV 254 (271)
T ss_pred EEeCCCCCCCC-cceEEeccCcceecccccccCceecCCCCeEEEEEEEEE
Confidence 78888887653 5677765444433 34457999999999997543
No 66
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=31.38 E-value=60 Score=25.06 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=23.9
Q ss_pred cccceEEEeeecCCceeeEEEeeeeCCCCeE
Q 017646 314 CCIGKVIRISHPKNESSFGIIRRFDEYSRKH 344 (368)
Q Consensus 314 ~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~h 344 (368)
.++|++|.|---..+.+.|++++||..-...
T Consensus 10 ~~~~~~V~V~l~~gr~~~G~L~g~D~~mNlv 40 (76)
T cd01732 10 KCIGSRIWIVMKSDKEFVGTLLGFDDYVNMV 40 (76)
T ss_pred HhCCCEEEEEECCCeEEEEEEEEeccceEEE
Confidence 4578888887777766559999999986643
No 67
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=30.98 E-value=32 Score=24.55 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.9
Q ss_pred EEEEccCCCCCCeEEE
Q 017646 213 GIFATRDIKKGENLTY 228 (368)
Q Consensus 213 ~i~A~RdI~~GEELT~ 228 (368)
.++|.++|.+|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4688999999999995
No 68
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=30.27 E-value=86 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=18.1
Q ss_pred eEEEeeeeCCCCeEEEEeecCceeE
Q 017646 331 FGIIRRFDEYSRKHSVLFEDGESEF 355 (368)
Q Consensus 331 ~g~v~~~~~~~~~h~~~y~dg~~e~ 355 (368)
.|+|++||+..+-=-|..++|+..+
T Consensus 2 ~G~V~~~~~~kgyGFI~~~~~~~di 26 (66)
T PF00313_consen 2 TGTVKWFDDEKGYGFITSDDGGEDI 26 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTSSSEE
T ss_pred eEEEEEEECCCCceEEEEcccceeE
Confidence 3888888887776667777776543
No 69
>cd01730 LSm3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm3 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=30.18 E-value=63 Score=25.11 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=23.5
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYS 341 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~ 341 (368)
+..++++|.|---..+.+.|++++||..-
T Consensus 7 ~~~~~k~V~V~l~~gr~~~G~L~~fD~~m 35 (82)
T cd01730 7 RLSLDERVYVKLRGDRELRGRLHAYDQHL 35 (82)
T ss_pred HHhCCCEEEEEECCCCEEEEEEEEEccce
Confidence 34588999998877777669999999855
No 70
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=29.34 E-value=1.5e+02 Score=21.14 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=26.0
Q ss_pred cceEEEeeecCCceee-EEEeeeeCCCC--eEEEEeec
Q 017646 316 IGKVIRISHPKNESSF-GIIRRFDEYSR--KHSVLFED 350 (368)
Q Consensus 316 vg~~~~~~~~~d~~~~-g~v~~~~~~~~--~h~~~y~d 350 (368)
||++|-+.| .+..+| +.|.+-....+ ..-|-|..
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g 39 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQG 39 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETT
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCC
Confidence 899999999 888889 98888777543 45555653
No 71
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=28.51 E-value=1.4e+02 Score=26.10 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=30.0
Q ss_pred ccccceEEEeeecCCceee-EEEeeeeCCCCeEEEEeecCce
Q 017646 313 QCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGES 353 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~ 353 (368)
-++||+.|.+-- .|.... |+|.+=.-..+...++++||.+
T Consensus 88 ~slVGk~V~~~~-~~g~~~tG~V~~V~~~~g~~~~~~v~G~~ 128 (142)
T PRK09618 88 SELIGKEVEWEG-EDGEIVSGTVTSVKQKDGDYPLVLDNGTW 128 (142)
T ss_pred HHHhCCEEEEEe-CCCCEEEEEEEEEEEcCCcEEEEEECCEE
Confidence 468999998753 344455 9999888778887788888843
No 72
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=28.40 E-value=1.1e+02 Score=20.62 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=26.0
Q ss_pred EeeecCCce-ee-EEEeeeeCCCCeEEEEeecCceeEE
Q 017646 321 RISHPKNES-SF-GIIRRFDEYSRKHSVLFEDGESEFI 356 (368)
Q Consensus 321 ~~~~~~d~~-~~-g~v~~~~~~~~~h~~~y~dg~~e~~ 356 (368)
.||=|..+- |. |.|. +....+-+|...||.+-.+
T Consensus 3 ~vWvpD~~egfv~g~I~--~~~g~~vtV~~~~G~~~tv 38 (42)
T PF02736_consen 3 WVWVPDPKEGFVKGEII--EEEGDKVTVKTEDGKEVTV 38 (42)
T ss_dssp EEEEEESSSSEEEEEEE--EEESSEEEEEETTTEEEEE
T ss_pred EEEEeCCcccEEEEEEE--EEcCCEEEEEECCCCEEEe
Confidence 478888877 55 9998 5667789999999876544
No 73
>PRK14637 hypothetical protein; Provisional
Probab=28.37 E-value=1.1e+02 Score=26.94 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=30.4
Q ss_pred CcccccceEEEeeecCCceee-EEEeeeeCCCCeEEEEeecCceeEEec
Q 017646 311 CPQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDM 358 (368)
Q Consensus 311 ~~~~~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~dg~~e~~~l 358 (368)
.-...+|+.|+|....++.|+ |++.++|..+=... .+|.+..+.+
T Consensus 92 ~f~r~~G~~V~V~l~~~~~~~~G~L~~~~d~~v~l~---~~~~~~~i~~ 137 (151)
T PRK14637 92 EFSIFVGETVKVWFECTGQWQVGTIAEADETCLVLT---SDGVPVTIPY 137 (151)
T ss_pred HHHHhCCCEEEEEECCCCcEEEEEEEEEeCCEEEEE---ECCEEEEEEH
Confidence 335679999999885667787 99999988633222 3555444443
No 74
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=28.09 E-value=1.9e+02 Score=24.73 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=24.8
Q ss_pred ccccceEEEeee--cCCc-eee-EEEeeeeCCCCeEEEEeecC
Q 017646 313 QCCIGKVIRISH--PKNE-SSF-GIIRRFDEYSRKHSVLFEDG 351 (368)
Q Consensus 313 ~~~vg~~~~~~~--~~d~-~~~-g~v~~~~~~~~~h~~~y~dg 351 (368)
+..+|+.|+|+. |.+. +.| |.+.+++. ...++.++++
T Consensus 83 ~~~iG~~v~v~~~~~~~~~~~~~G~L~~~~~--~~i~l~~~~~ 123 (141)
T PF02576_consen 83 ERFIGRKVKVKLKQPVNGRKEFEGKLLEVDE--DEITLEVEGK 123 (141)
T ss_dssp HHH-SEEEEEE-SS-SSS-SEEEEEEEEEET--TEEEEEEE-S
T ss_pred HHhcCCeEEEEEeccCCCcEEEEEEEEEEeC--CEEEEEECCc
Confidence 467999999998 3343 355 99999998 5566667666
No 75
>PRK10943 cold shock-like protein CspC; Provisional
Probab=26.73 E-value=1e+02 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=16.0
Q ss_pred EEEeeeeCCCCeEEEEeecCceeE
Q 017646 332 GIIRRFDEYSRKHSVLFEDGESEF 355 (368)
Q Consensus 332 g~v~~~~~~~~~h~~~y~dg~~e~ 355 (368)
|+|+.||..++-==|.=+||...+
T Consensus 6 G~Vk~f~~~kGfGFI~~~~g~~dv 29 (69)
T PRK10943 6 GQVKWFNESKGFGFITPADGSKDV 29 (69)
T ss_pred eEEEEEeCCCCcEEEecCCCCeeE
Confidence 788888877776666666655443
No 76
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=2.1e+02 Score=23.22 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCCCCCCCCcccccceEEEeeecCCceee---EEEeeeeCCCCeEEEEeecCce
Q 017646 303 PPYNQRQICPQCCIGKVIRISHPKNESSF---GIIRRFDEYSRKHSVLFEDGES 353 (368)
Q Consensus 303 p~~~~~~~~~~~~vg~~~~~~~~~d~~~~---g~v~~~~~~~~~h~~~y~dg~~ 353 (368)
++...+.++..+|||..|+|---.|..+. |.|.+. -|-++.+++|+-
T Consensus 3 ~~i~p~~i~~hEliGl~vrVv~s~~~s~vGI~G~VVdE----TkNtLvi~t~~~ 52 (95)
T COG1588 3 GRITPRNIIRHELIGLEVRVVRSTNPSYVGIEGRVVDE----TKNTLVIDTGSR 52 (95)
T ss_pred CCccCCCcChHHhcCcEEEEEecCCCCccceeEEEEee----eccEEEEECCCc
Confidence 34556788899999999999999999977 566543 344566655543
No 77
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=25.55 E-value=20 Score=36.58 Aligned_cols=37 Identities=38% Similarity=0.793 Sum_probs=30.5
Q ss_pred CCCccccccCCCCCCCCCC-CCCCccceeeeCCCCCCCCCCCCC
Q 017646 63 DDGIFCSCTASPGSSGVCD-RDCHCGMLLSSCSSGCKCGNSCLN 105 (368)
Q Consensus 63 ~~~~~C~C~~~~~~~~~C~-~~C~c~~~~~eC~~~C~C~~~C~N 105 (368)
.+..+|+|+.+ +|- ..|.|.+..+-|+.+|+| ..|.|
T Consensus 215 ~hkkGC~CkkS-----gClKkYCECyQa~vlCS~nCkC-~~CkN 252 (406)
T KOG1171|consen 215 RHKKGCNCKKS-----GCLKKYCECYQAGVLCSSNCKC-QGCKN 252 (406)
T ss_pred hhcCCCCCccc-----cchHHHHHHHhcCCCccccccC-cCCcc
Confidence 35678999973 574 469999999999999999 67888
No 78
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=24.77 E-value=1.1e+02 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=15.4
Q ss_pred EEEeeeeCCCCeEEEEeecCcee
Q 017646 332 GIIRRFDEYSRKHSVLFEDGESE 354 (368)
Q Consensus 332 g~v~~~~~~~~~h~~~y~dg~~e 354 (368)
|+|+.||...+-==|.=+||..+
T Consensus 6 G~Vk~f~~~kGyGFI~~~~g~~d 28 (69)
T PRK09507 6 GNVKWFNESKGFGFITPEDGSKD 28 (69)
T ss_pred eEEEEEeCCCCcEEEecCCCCee
Confidence 77777777777666666666543
No 79
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.13 E-value=3.6e+02 Score=25.22 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=56.6
Q ss_pred EEEEEEEccCCCCCCeEEEecCCCCCCCCceeecCCCCCccccCCCCCCCCCChHHHHHHHHhhh-hccchHHHHHhcCC
Q 017646 210 TRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKISSDAALKLVACQV-AVSSPKLKAILSGK 288 (368)
Q Consensus 210 ~ri~i~A~RdI~~GEELT~dY~~~~~~~~~~C~Cgs~~Crg~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~k~k~~l~~~ 288 (368)
+..+++|.|.|.+||-|+.+= .... ++.+...|..+-...++....+++.. ....+=.-..+...
T Consensus 94 ~~~~~va~r~I~~Ge~i~a~d---v~~~-----------~~~~~~l~~~~~~d~~~vvg~vskr~l~pg~~i~~~~lr~~ 159 (220)
T COG1261 94 PGEVVVAARTIYRGEKISAAD---VKLK-----------RGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLRQA 159 (220)
T ss_pred cceEEEEecccCCCCccChhH---heee-----------eeccccCCCcccCCHHHHhcHHhhhccCCCCEecHHHhccc
Confidence 447889999999999998321 1100 12233444443344454444333221 11111001111111
Q ss_pred c----------eeeCCCccccCCCCCCCCCCCCcccccceEEEeeecCCceee-EEEe
Q 017646 289 D----------FYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESSF-GIIR 335 (368)
Q Consensus 289 ~----------~~~~~~~~~g~~~p~~~~~~~~~~~~vg~~~~~~~~~d~~~~-g~v~ 335 (368)
- +...|++.+.. .-+....--+|+.|||--+...+.. |+|.
T Consensus 160 ~lV~rg~~V~~v~~~ggi~i~~------~g~aL~nga~Ge~IrVrn~~SgkIvsg~V~ 211 (220)
T COG1261 160 WLVKRGQIVTVVAEGGGISITA------EGKALENGAVGEVIRVRNVSSGKIVSGTVD 211 (220)
T ss_pred eeEecCCEEEEEEeCCCEEEEE------eeeEccCccccceEEEecCCCCceEEEEEc
Confidence 1 44555555433 2455666679999999999977766 8873
No 80
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=24.06 E-value=82 Score=25.65 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=15.7
Q ss_pred CcccccceEEEeeecCCc-eee-EEEeee
Q 017646 311 CPQCCIGKVIRISHPKNE-SSF-GIIRRF 337 (368)
Q Consensus 311 ~~~~~vg~~~~~~~~~d~-~~~-g~v~~~ 337 (368)
..+++||+.|-|=--..+ .|| |.|.+=
T Consensus 3 ~~dellGkVV~V~~~~~k~~W~PALVVsP 31 (96)
T PF08169_consen 3 LNDELLGKVVCVESTKKKTSWFPALVVSP 31 (96)
T ss_dssp ---SSTTSEEEEE-SS-SS-EEEEEEE--
T ss_pred cCHhhcCcEEEEEcCCCCCceeeEEEEcC
Confidence 467899999999443333 399 988873
No 81
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=23.96 E-value=1.3e+02 Score=22.89 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=27.5
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCCeEE
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSRKHS 345 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~~h~ 345 (368)
..++|++|.|---.+..+.|++.+||..-..|.
T Consensus 7 ~~~~g~~V~VeLkng~~~~G~L~~~D~~mNi~L 39 (76)
T cd01723 7 KTAQNHPMLVELKNGETYNGHLVNCDNWMNIHL 39 (76)
T ss_pred HhcCCCEEEEEECCCCEEEEEEEEEcCCCceEE
Confidence 567999999988877776699999999887664
No 82
>COG1278 CspC Cold shock proteins [Transcription]
Probab=23.89 E-value=69 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEeeeeCCCCeEEEEeecCceeE
Q 017646 332 GIIRRFDEYSRKHSVLFEDGESEF 355 (368)
Q Consensus 332 g~v~~~~~~~~~h~~~y~dg~~e~ 355 (368)
|+|+.||+.++.=-|.=|||...+
T Consensus 4 GtVKwfn~~KGfGFI~p~~G~~Dv 27 (67)
T COG1278 4 GTVKWFNATKGFGFITPEDGGKDV 27 (67)
T ss_pred ceEEEeeCCCcceEcCCCCCCcCE
Confidence 899999999999999999996443
No 83
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=23.28 E-value=92 Score=29.50 Aligned_cols=36 Identities=8% Similarity=0.281 Sum_probs=30.8
Q ss_pred cccceEEEeeecCCceee-EEEeeeeCCCCeEEEEee
Q 017646 314 CCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFE 349 (368)
Q Consensus 314 ~~vg~~~~~~~~~d~~~~-g~v~~~~~~~~~h~~~y~ 349 (368)
--||.++.+-|+.|..|| ..|++-++....--|.|+
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~ 127 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA 127 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence 458999999999999999 999999987776666664
No 84
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.00 E-value=55 Score=33.38 Aligned_cols=25 Identities=48% Similarity=0.729 Sum_probs=22.1
Q ss_pred CCCcEEEecccCCCCcEEEEEccee
Q 017646 123 KCGAGIVADEDIKRGEFVIEYVGEV 147 (368)
Q Consensus 123 ~kG~GlfA~~~I~~G~~I~ey~Gev 147 (368)
..|.|++|+++|++|+.++.|.+.-
T Consensus 39 ~~G~g~vAtesIkkgE~Lf~~prds 63 (466)
T KOG1338|consen 39 IAGAGIVATESIKKGESLFAYPRDS 63 (466)
T ss_pred hcccceeeehhhcCCceEEEecCcc
Confidence 3599999999999999999998763
No 85
>PF13964 Kelch_6: Kelch motif
Probab=22.20 E-value=73 Score=21.63 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.3
Q ss_pred cCceeEEeccccceEeccC
Q 017646 350 DGESEFIDMAKVDWELVTD 368 (368)
Q Consensus 350 dg~~e~~~l~~e~~~~~~~ 368 (368)
-.++|.+|+...+|+.+++
T Consensus 27 ~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPP 45 (50)
T ss_pred cccEEEEcCCCCcEEECCC
Confidence 4678899999999998853
No 86
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=21.12 E-value=1.3e+02 Score=22.38 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=15.6
Q ss_pred EEEeeeeCCCCeEEEEeecCcee
Q 017646 332 GIIRRFDEYSRKHSVLFEDGESE 354 (368)
Q Consensus 332 g~v~~~~~~~~~h~~~y~dg~~e 354 (368)
|+|+.||..++-=-|.-+||...
T Consensus 4 G~Vk~f~~~kGfGFI~~~~g~~d 26 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICPEGVDGD 26 (68)
T ss_pred eEEEEEeCCCCeEEEecCCCCcc
Confidence 77777777777666666665443
No 87
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=20.81 E-value=1.3e+02 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.4
Q ss_pred ceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 317 GKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 317 g~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
|++|.|.-..+..+.|.+++||..-.
T Consensus 14 ~~~V~V~lr~~r~~~G~L~~fD~hmN 39 (87)
T cd01720 14 NTQVLINCRNNKKLLGRVKAFDRHCN 39 (87)
T ss_pred CCEEEEEEcCCCEEEEEEEEecCccE
Confidence 88999999998887799999997543
No 88
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=20.80 E-value=1.1e+02 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=19.3
Q ss_pred CCCCcccccceEEEeee--cCCceee--EEEe
Q 017646 308 RQICPQCCIGKVIRISH--PKNESSF--GIIR 335 (368)
Q Consensus 308 ~~~~~~~~vg~~~~~~~--~~d~~~~--g~v~ 335 (368)
.......+-|.++++|| |.|-.++ |.+.
T Consensus 37 ~~vdl~~l~g~~~~a~WfdPR~G~~~~~g~~~ 68 (93)
T PF12904_consen 37 FTVDLSKLSGKKVKAWWFDPRTGKYTYIGEFS 68 (93)
T ss_dssp EEEEGGGSS-SEEEEEEEETTT-BEEEEEEEE
T ss_pred EEEEcccccCCceeEEEEcCCCCCEEEeeeec
Confidence 34456678999999999 8888765 7654
No 89
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=20.67 E-value=2.5e+02 Score=22.79 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=26.2
Q ss_pred ccccceEEEeeecCCceeeEEEeeeeCCCC
Q 017646 313 QCCIGKVIRISHPKNESSFGIIRRFDEYSR 342 (368)
Q Consensus 313 ~~~vg~~~~~~~~~d~~~~g~v~~~~~~~~ 342 (368)
...||++|.+--..|-+|.|++..-|....
T Consensus 4 ~~~IGs~ISlisk~~iRYeG~L~~Id~~~s 33 (96)
T PF12701_consen 4 DPYIGSKISLISKSDIRYEGILYSIDTEDS 33 (96)
T ss_dssp CCCTTCEEEEEETTTEEEEEEEEEEETTTT
T ss_pred ccccCCEEEEEECCCcEEEEEEEEEcCCCC
Confidence 467999999999999887799999998554
Done!