BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017647
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 138 YDQYGEAGVKST 149
+D+YGE G+K +
Sbjct: 64 FDRYGEEGLKGS 75
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
+SGDYY LGVP++AS KEIK AY +LA++YHPD NK +P A EKF +++ AYEVLSD+
Sbjct: 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 64
Query: 134 KRAMYDQYG 142
KR YD YG
Sbjct: 65 KRKQYDAYG 73
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 116/268 (43%), Gaps = 52/268 (19%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
DYYA LGV + K IK AYR+LAR+YHPDV+KE A KFK+++ A+EVL D+++RA
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 138 YDQY----GEAGVKSTVGGGSSAYTTNPF-DLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
YDQ + G +Y+ F D+F + RRR
Sbjct: 89 YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQA-----------HQRRRQHA 137
Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSH---------------LETCEVCTGTGAKMGS 237
+G DL ++ + E++ AE+ +S+ +T V G G
Sbjct: 138 ARGHDLEIEVAVFLEETL--AEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQ 195
Query: 238 KMRI--CSTCGGRGQVMRTDQTPFG-LFSQVSVCPS-----CGGEGEVISEYCRKCSGEG 289
++R+ T G G P G L+ + + P G E++ + G
Sbjct: 196 RIRLKGQGTPGENG-------GPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALG 248
Query: 290 R----IRLKKNIKVKVPPGVSTGSILRV 313
LK++I + VPPG G LR+
Sbjct: 249 AKVTVPTLKESILLTVPPGSQAGQRLRI 276
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 87.0 bits (214), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
DYYA +GV + K IK AYR+LAR+YHPDV+KEP A +FKE++ A+EVLSD+++RA
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 138 YDQ 140
YDQ
Sbjct: 66 YDQ 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
+SGDYY LGV + AS +++K AYR+LA ++HPD N PGATE FK I AY VLS+ +K
Sbjct: 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64
Query: 135 RAMYDQYG 142
R YDQ+G
Sbjct: 65 RKQYDQFG 72
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 82.4 bits (202), Expect = 4e-16, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
A DYY LGV K+A +EI+ AY++LA +YHPD N+ + A KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
KRA YDQYG A
Sbjct: 61 KRAAYDQYGHAA 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 81.6 bits (200), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
D Y LGV ++AS +IK AY+KLAR++HPD NK+PGA ++F +IS AYE+LS+++KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 138 YDQYG 142
YD YG
Sbjct: 78 YDHYG 82
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 81.3 bits (199), Expect = 7e-16, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
A DYY LGV K+A +EI+ AY++LA +YHPD N+ + A KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
KRA YDQYG A
Sbjct: 61 KRAAYDQYGHAA 72
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 79 YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
YY LGVPKSAS ++IK A+ KLA +YHPD NK P A KF+EI+ AYE LSD +R Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 139 DQYGEAGVKSTVGGGSS 155
D G + T G G S
Sbjct: 69 DTLGHSAF--TSGKGQS 83
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 80.9 bits (198), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
A DYY LGV K+A +EI+ AY++LA +YHPD N+ + A KFKEI AYEVL+D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
KRA YDQYG A
Sbjct: 61 KRAAYDQYGHAA 72
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 79 YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRA 136
YY L VP+SAS +IK AYR+ A Q+HPD N + A +KFKE++ AYEVLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 137 MYDQYGEAGVKSTVGGGSSA 156
+YD+YG G+ T G S A
Sbjct: 64 IYDRYGREGLTGTGTGPSRA 83
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 79.0 bits (193), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 79 YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
YY LGV AS E+K AYRK+A ++HPD K P E+FK+IS AYEVLSD+KKR +Y
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 139 DQYGE 143
DQ GE
Sbjct: 68 DQGGE 72
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 78.2 bits (191), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 79 YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
YY LGV +A+ +E+K AYRKLA +YHPD K P EKFK+IS AYEVLSD KKR +Y
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 139 DQYGE 143
D+ GE
Sbjct: 66 DKGGE 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
DYY L VP+ AS + IK AYRKLA ++HPD N E A +FK+++ AYEVLSD KKR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 136 AMYDQYG 142
+YD+YG
Sbjct: 70 DIYDRYG 76
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
++Y+ LGV K+AS +EI+ A++KLA + HPD N P A F +I+ AYEVL D+ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
YD+YGE G++ GG +++ +D
Sbjct: 63 KYDKYGEKGLEDNQGGQYESWSYYRYDF 90
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
++Y+ LGV K+AS +EI+ A++KLA + HPD N P A F +I+ AYEVL D+ R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
YD+YGE G++ GG +++ +D
Sbjct: 82 KYDKYGEKGLEDNQGGQYESWSYYRYDF 109
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 74.7 bits (182), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 80 YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD 139
Y LGV SA+ +E+K YRK A +YHPD K G TEKFKEIS A+E+L+D +KR +YD
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKREIYD 68
Query: 140 QYGEAGVKS 148
QYG +S
Sbjct: 69 QYGLEAARS 77
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 70 RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEV 128
RS+ + Y LG+ K+A+ +IK +YRKLA +YHPD N + P A +KFKEI+ A+ +
Sbjct: 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
Query: 129 LSDDKKRAMYDQYGEAGV 146
L+D KR +YD+YG G+
Sbjct: 70 LTDATKRNIYDKYGSLGL 87
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 69 GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVN--KEPGATEKFKEISAAY 126
G S +YY LGV SAS ++IK AYRKLA ++HPD N + A +KFK +S AY
Sbjct: 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 127 EVLSDDKKRAMYDQYG 142
EVLSD KKR++YD+ G
Sbjct: 61 EVLSDSKKRSLYDRAG 76
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 215 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274
KE + LE C+VC G+GAK G++ + C TC G GQV Q G F+ CP C G
Sbjct: 4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV----QMRQGFFAVQQTCPHCQGR 59
Query: 275 GEVISEYCRKCSGEGRI 291
G +I + C KC G GR+
Sbjct: 60 GTLIKDPCNKCHGHGRV 76
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 204 LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS 263
L F+++ G KEF ++ ++TCE C G G + G+K++ C CGG G M T T G F
Sbjct: 10 LTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINT--GPFV 65
Query: 264 QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 295
S C CGG G +I C C G G+ + KK
Sbjct: 66 MRSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
+R +G+D++++I E G + L+ C+ C G G K G+ ++ C++C
Sbjct: 2 AQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSC 60
Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPP 303
G+G T Q + + C C G G++I + C+ C+G+ +K ++V V P
Sbjct: 61 NGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEP 120
Query: 304 GVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIP--GIQRDGIDLFSTISISYLDAIM 361
G+ G R+V V++ V E P +RDG DL I L AI
Sbjct: 121 GMKDGQ--RIVFKGEADQAPDVIPGDVVFI-VSERPHKSFKRDGDDLVYEAEIDLLTAIA 177
Query: 362 G 362
G
Sbjct: 178 G 178
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
DYY LGV ++A +EI AYRKLA Q+HPD ++ A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
R +D
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
DYY LGV ++A +EI AYRKLA Q+HPD ++ A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
R +D
Sbjct: 443 MRKKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 63 SSTYRFGRSVVCASGDYYATLGVPKSASGKE-IKAAYRKLARQYHPD--VNKEPG--ATE 117
S+ F + C + Y L V + K+ + AYR LAR++HPD NKE A E
Sbjct: 1 SNAVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEE 60
Query: 118 KFKEISAAYEVLSDDKKRAMYDQY 141
+F+ I+ AYE L DD+ + YD Y
Sbjct: 61 RFRVIATAYETLKDDEAKTNYDYY 84
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
DYY LG + +S ++I A ++ A + HPD + E P A E F+++ A E+L++++ RA
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 137 MYDQY 141
YD +
Sbjct: 81 RYDHW 85
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 80 YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-ATEKFKEISAAYEVLSDDKKRAMY 138
Y LGVP +A+ +IKAAY + YHPD N A E+F IS AY VL R Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 139 DQ 140
D+
Sbjct: 80 DR 81
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
D+Y+ LG SA+ ++K Y+KL YHPD P T +KF EI A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 131 DDKKRAMYD 139
+++ + YD
Sbjct: 71 NEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
D+Y+ LG SA+ ++K Y+KL YHPD P T +KF EI A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 131 DDKKRAMYD 139
+++ + YD
Sbjct: 77 NEETKKKYD 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVL 129
S D + LGV AS E+ AYRKLA HPD PG+ + FK + A L
Sbjct: 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 114
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 83 LGVPKSASGK--EIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
LG+ +SA G ++ AY K +++HPD + G EK K+++ Y+ + D K A
Sbjct: 14 LGLERSAWGNIPLMRKAYLKKCKEFHPD---KGGDEEKMKKMNTLYKKMEDGVKYAHQPD 70
Query: 141 YG 142
+G
Sbjct: 71 FG 72
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 83 LGVPKSASGK--EIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
LG+ +SA G ++ AY K +++HPD + G EK K+++ Y+ + D K A
Sbjct: 17 LGLERSAWGNIPLMRKAYLKKCKEFHPD---KGGDEEKMKKMNTLYKKMEDGVKYAHQPD 73
Query: 141 YG 142
+G
Sbjct: 74 FG 75
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 94 IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
++ YR+L Q+HPD+ ++ +E+ ++ AY L D +R+ Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 94 IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
++ YR+L Q+HPD+ ++ +E+ ++ AY L D +R+ Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPD------VNKEPGATEKFKEISAAYE 127
+ +Y+ G+P G + + +R L +++HPD A ++ +I+ AY+
Sbjct: 3 AXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQ 62
Query: 128 VLSDDKKRAMY 138
L D +RA Y
Sbjct: 63 TLKDPLRRAEY 73
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 78 DYYATLGVPK--SASGKEIKAAYRKLARQYHPD------VNKEPGATEKFKEISAAYEVL 129
DY+ G+P + + ++ L RQYHPD ++ A ++ I+ A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 130 SDDKKRAMY 138
RA Y
Sbjct: 62 RHPLMRAEY 70
>pdb|3EIN|A Chain A, Delta Class Gst
pdb|3MAK|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd1 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 209
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 98 YRKLARQYHPDV-NKEPGATEKFKEISAAYEVLS 130
Y+ A Y+P V K P E FK+I AA+E L+
Sbjct: 106 YQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLN 139
>pdb|3LCZ|A Chain A, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LCZ|B Chain B, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LCZ|C Chain C, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LCZ|D Chain D, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LD0|A Chain A, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|B Chain B, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|C Chain C, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|D Chain D, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|E Chain E, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|F Chain F, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|G Chain G, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|H Chain H, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|I Chain I, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|J Chain J, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|K Chain K, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|L Chain L, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|M Chain M, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|N Chain N, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|O Chain O, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|P Chain P, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|Q Chain Q, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|R Chain R, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|S Chain S, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|T Chain T, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|U Chain U, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|V Chain V, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|W Chain W, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|X Chain X, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|Y Chain Y, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|Z Chain Z, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|1 Chain 1, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|2 Chain 2, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|3 Chain 3, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|4 Chain 4, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|5 Chain 5, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|6 Chain 6, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|7 Chain 7, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|8 Chain 8, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|9 Chain 9, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|AA Chain a, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|BB Chain b, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|CC Chain c, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|DD Chain d, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|EE Chain e, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|FF Chain f, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|GG Chain g, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|HH Chain h, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|II Chain i, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|JJ Chain j, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|KK Chain k, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|LL Chain l, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|MM Chain m, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
Length = 53
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 266 SVCPSCGGEGEVISEYCRKCSGEGRI 291
+ CP+C G G E C KC G+G I
Sbjct: 10 TTCPNCNGSGREEPEPCPKCLGKGVI 35
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD----QTPFGLFSQVSV 267
G +E H + CEVC + G ++ +C TC ++ D + P G +S
Sbjct: 1 GPLGSYETDHQDYCEVC-----QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWS---- 51
Query: 268 CPSCGGEG 275
CP C EG
Sbjct: 52 CPHCEKEG 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,208,438
Number of Sequences: 62578
Number of extensions: 354126
Number of successful extensions: 961
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 44
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)