Query 017647
Match_columns 368
No_of_seqs 350 out of 2750
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3E-77 6.5E-82 570.2 26.2 283 74-368 1-286 (371)
2 PRK14296 chaperone protein Dna 100.0 2.3E-66 5.1E-71 507.8 27.6 280 76-368 3-296 (372)
3 PRK14298 chaperone protein Dna 100.0 1.4E-65 3.1E-70 503.0 26.8 280 76-368 4-287 (377)
4 PRK14287 chaperone protein Dna 100.0 2.5E-65 5.4E-70 500.7 27.2 281 76-368 3-284 (371)
5 PRK14288 chaperone protein Dna 100.0 1.7E-65 3.8E-70 501.5 25.9 278 76-368 2-280 (369)
6 PRK14276 chaperone protein Dna 100.0 3.9E-65 8.5E-70 501.1 27.3 282 76-368 3-292 (380)
7 PRK14280 chaperone protein Dna 100.0 5.6E-65 1.2E-69 499.4 27.8 281 77-368 4-289 (376)
8 PRK14278 chaperone protein Dna 100.0 9.4E-65 2E-69 497.8 27.0 282 76-368 2-285 (378)
9 PRK14282 chaperone protein Dna 100.0 1.8E-64 4E-69 494.9 27.9 283 76-368 3-298 (369)
10 PRK14277 chaperone protein Dna 100.0 1.2E-64 2.6E-69 498.6 26.7 286 75-368 3-301 (386)
11 PRK14286 chaperone protein Dna 100.0 2.2E-64 4.8E-69 494.2 26.2 282 76-368 3-292 (372)
12 PRK14297 chaperone protein Dna 100.0 4.7E-64 1E-68 493.8 27.0 284 76-368 3-294 (380)
13 PRK14279 chaperone protein Dna 100.0 3.4E-64 7.4E-69 495.6 25.7 290 75-368 7-315 (392)
14 PRK14285 chaperone protein Dna 100.0 5.6E-64 1.2E-68 490.2 25.1 278 76-368 2-288 (365)
15 PTZ00037 DnaJ_C chaperone prot 100.0 1.2E-63 2.6E-68 493.3 26.4 268 76-368 27-296 (421)
16 PRK14284 chaperone protein Dna 100.0 3.4E-63 7.5E-68 489.0 27.1 281 77-368 1-300 (391)
17 PRK14294 chaperone protein Dna 100.0 5.4E-63 1.2E-67 484.0 25.8 280 76-368 3-286 (366)
18 TIGR02349 DnaJ_bact chaperone 100.0 7.2E-63 1.6E-67 482.1 26.3 282 78-368 1-289 (354)
19 PRK14281 chaperone protein Dna 100.0 7.9E-63 1.7E-67 487.0 26.3 292 76-368 2-308 (397)
20 PRK14295 chaperone protein Dna 100.0 1.3E-62 2.8E-67 484.0 27.4 290 75-368 7-308 (389)
21 PRK14301 chaperone protein Dna 100.0 1E-62 2.2E-67 482.6 24.9 281 76-368 3-286 (373)
22 PRK14291 chaperone protein Dna 100.0 2.5E-62 5.4E-67 481.5 26.2 288 76-368 2-297 (382)
23 PRK14300 chaperone protein Dna 100.0 5.8E-62 1.3E-66 477.4 26.3 282 76-368 2-287 (372)
24 PRK10767 chaperone protein Dna 100.0 1.3E-61 2.8E-66 475.6 26.3 280 76-368 3-284 (371)
25 PRK14283 chaperone protein Dna 100.0 3.3E-61 7.2E-66 473.3 27.0 288 75-368 3-292 (378)
26 PRK14289 chaperone protein Dna 100.0 5E-61 1.1E-65 473.5 27.4 293 75-368 3-300 (386)
27 PRK14293 chaperone protein Dna 100.0 9E-61 1.9E-65 469.6 26.3 287 76-368 2-289 (374)
28 PRK14290 chaperone protein Dna 100.0 1.6E-60 3.4E-65 466.4 27.2 284 76-368 2-292 (365)
29 PRK14292 chaperone protein Dna 100.0 5.6E-60 1.2E-64 464.0 26.0 281 77-368 2-284 (371)
30 KOG0712 Molecular chaperone (D 100.0 2.5E-56 5.5E-61 420.9 17.9 268 76-367 3-273 (337)
31 PRK14299 chaperone protein Dna 100.0 3.7E-44 8.1E-49 340.8 19.6 211 76-368 3-223 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.4E-43 2.9E-48 339.4 21.8 222 77-368 4-231 (306)
33 KOG0715 Molecular chaperone (D 100.0 1.5E-42 3.2E-47 327.3 13.9 245 78-358 44-288 (288)
34 KOG0713 Molecular chaperone (D 100.0 1.9E-38 4E-43 296.0 9.5 260 71-367 10-272 (336)
35 TIGR03835 termin_org_DnaJ term 100.0 5.3E-30 1.1E-34 260.1 19.1 113 195-368 656-768 (871)
36 KOG0714 Molecular chaperone (D 99.8 3.1E-20 6.6E-25 176.0 13.8 234 75-368 1-274 (306)
37 KOG0716 Molecular chaperone (D 99.8 3.9E-20 8.4E-25 168.1 6.4 73 76-148 30-103 (279)
38 COG2214 CbpA DnaJ-class molecu 99.8 5E-18 1.1E-22 153.9 14.9 69 74-142 3-73 (237)
39 KOG0718 Molecular chaperone (D 99.8 3.2E-19 6.9E-24 172.1 5.5 73 75-147 7-83 (546)
40 PTZ00341 Ring-infected erythro 99.8 7.2E-19 1.6E-23 183.2 6.6 77 72-148 568-644 (1136)
41 PF00226 DnaJ: DnaJ domain; I 99.7 2.9E-18 6.3E-23 126.3 5.3 62 78-139 1-64 (64)
42 KOG0691 Molecular chaperone (D 99.7 6.9E-18 1.5E-22 158.6 6.0 88 76-170 4-92 (296)
43 COG0484 DnaJ DnaJ-class molecu 99.7 3.9E-17 8.5E-22 157.1 7.6 120 221-352 158-347 (371)
44 KOG0717 Molecular chaperone (D 99.7 1.3E-17 2.8E-22 161.0 3.7 74 74-147 5-80 (508)
45 PHA03102 Small T antigen; Revi 99.7 5.9E-17 1.3E-21 138.4 5.9 84 77-171 5-90 (153)
46 KOG0719 Molecular chaperone (D 99.7 5.4E-17 1.2E-21 144.3 5.5 70 75-144 12-84 (264)
47 KOG0624 dsRNA-activated protei 99.6 3.3E-16 7.1E-21 147.0 8.1 73 75-148 392-468 (504)
48 smart00271 DnaJ DnaJ molecular 99.6 2.8E-16 6E-21 114.0 5.5 58 77-134 1-60 (60)
49 KOG0721 Molecular chaperone (D 99.6 2.8E-16 6E-21 138.7 6.4 70 76-145 98-168 (230)
50 cd06257 DnaJ DnaJ domain or J- 99.6 7E-16 1.5E-20 109.8 5.9 54 78-131 1-55 (55)
51 PRK14282 chaperone protein Dna 99.6 2.8E-15 6.1E-20 147.4 8.2 119 221-351 168-359 (369)
52 PRK14290 chaperone protein Dna 99.6 3.8E-15 8.2E-20 146.3 8.3 120 221-352 164-353 (365)
53 PRK14298 chaperone protein Dna 99.6 5.3E-15 1.1E-19 145.7 8.9 120 221-352 157-348 (377)
54 PRK14294 chaperone protein Dna 99.6 6.7E-15 1.4E-19 144.6 9.1 121 221-353 160-348 (366)
55 PRK10767 chaperone protein Dna 99.5 1.1E-14 2.4E-19 143.5 8.9 120 221-352 158-345 (371)
56 PRK14301 chaperone protein Dna 99.5 1.2E-14 2.6E-19 143.0 9.1 120 221-352 160-347 (373)
57 PRK14285 chaperone protein Dna 99.5 5.4E-15 1.2E-19 145.1 5.8 120 221-352 162-350 (365)
58 PRK14284 chaperone protein Dna 99.5 1.4E-14 3E-19 143.5 7.9 120 221-352 174-363 (391)
59 PRK14278 chaperone protein Dna 99.5 2.8E-14 6.2E-19 140.6 9.8 119 221-351 155-346 (378)
60 PRK14300 chaperone protein Dna 99.5 1.7E-14 3.8E-19 141.9 8.1 119 221-351 161-348 (372)
61 PRK14288 chaperone protein Dna 99.5 2.9E-14 6.3E-19 140.1 8.5 119 221-351 155-341 (369)
62 PRK14287 chaperone protein Dna 99.5 2E-14 4.3E-19 141.4 7.3 120 221-352 154-345 (371)
63 PRK14276 chaperone protein Dna 99.5 2.6E-14 5.6E-19 141.1 7.5 119 221-351 162-352 (380)
64 PRK14281 chaperone protein Dna 99.5 3E-14 6.6E-19 141.3 8.0 119 221-351 178-368 (397)
65 PRK14286 chaperone protein Dna 99.5 3.5E-14 7.7E-19 139.7 8.1 119 221-351 166-353 (372)
66 TIGR02349 DnaJ_bact chaperone 99.5 3.3E-14 7.1E-19 139.3 7.7 116 222-349 160-347 (354)
67 PRK14279 chaperone protein Dna 99.5 3.7E-14 8.1E-19 140.4 8.0 118 221-351 189-374 (392)
68 PRK14280 chaperone protein Dna 99.5 7.2E-14 1.6E-18 137.7 9.8 119 221-351 159-349 (376)
69 PRK14277 chaperone protein Dna 99.5 8.2E-14 1.8E-18 137.8 9.6 119 221-351 171-361 (386)
70 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 7.5E-14 1.6E-18 103.3 6.1 65 225-289 1-66 (66)
71 PRK14296 chaperone protein Dna 99.5 7.3E-14 1.6E-18 137.4 7.7 118 221-350 165-356 (372)
72 PRK14297 chaperone protein Dna 99.5 8E-14 1.7E-18 137.7 7.9 117 222-350 165-353 (380)
73 PRK14289 chaperone protein Dna 99.5 9.8E-14 2.1E-18 137.4 7.5 117 221-349 170-358 (386)
74 PRK14295 chaperone protein Dna 99.5 1.2E-13 2.6E-18 136.6 8.1 118 221-351 182-368 (389)
75 PRK14293 chaperone protein Dna 99.5 1.1E-13 2.4E-18 136.4 7.5 120 221-352 159-351 (374)
76 PRK14283 chaperone protein Dna 99.4 1.6E-13 3.6E-18 135.4 7.8 119 221-351 162-352 (378)
77 PRK05014 hscB co-chaperone Hsc 99.4 1.6E-13 3.4E-18 120.6 6.6 64 77-140 1-72 (171)
78 PRK01356 hscB co-chaperone Hsc 99.4 1.5E-13 3.2E-18 120.1 6.3 64 77-140 2-71 (166)
79 PTZ00037 DnaJ_C chaperone prot 99.4 2E-13 4.4E-18 135.8 8.1 119 221-349 165-360 (421)
80 KOG0550 Molecular chaperone (D 99.4 1E-13 2.2E-18 133.1 5.6 89 75-168 371-461 (486)
81 KOG0722 Molecular chaperone (D 99.4 7.7E-14 1.7E-18 125.6 3.6 70 72-141 28-97 (329)
82 KOG0720 Molecular chaperone (D 99.4 1.3E-13 2.8E-18 133.7 4.8 67 76-142 234-300 (490)
83 PRK14292 chaperone protein Dna 99.4 3.6E-13 7.8E-18 132.7 6.9 119 221-351 156-344 (371)
84 PRK14291 chaperone protein Dna 99.4 5.8E-13 1.3E-17 131.6 8.2 109 221-342 172-351 (382)
85 PRK00294 hscB co-chaperone Hsc 99.4 7.8E-13 1.7E-17 116.1 7.0 65 76-140 3-75 (173)
86 PRK03578 hscB co-chaperone Hsc 99.4 8.9E-13 1.9E-17 116.2 6.7 65 76-140 5-77 (176)
87 PTZ00100 DnaJ chaperone protei 99.3 9.4E-13 2E-17 107.0 5.2 51 77-130 65-115 (116)
88 PRK09430 djlA Dna-J like membr 99.2 5.3E-12 1.1E-16 118.7 5.1 57 76-132 199-263 (267)
89 PHA02624 large T antigen; Prov 99.2 8.3E-12 1.8E-16 126.9 5.4 60 76-138 10-71 (647)
90 PF01556 CTDII: DnaJ C termina 99.2 4.2E-11 9.1E-16 92.4 5.3 52 295-346 27-79 (81)
91 COG5407 SEC63 Preprotein trans 99.1 3.5E-11 7.5E-16 116.4 4.6 72 76-147 97-174 (610)
92 PRK01773 hscB co-chaperone Hsc 99.0 5.7E-10 1.2E-14 98.0 6.7 64 77-140 2-73 (173)
93 TIGR00714 hscB Fe-S protein as 98.9 1.2E-09 2.5E-14 94.8 6.1 54 88-141 2-61 (157)
94 COG5269 ZUO1 Ribosome-associat 98.9 1.1E-09 2.4E-14 99.8 3.8 71 71-141 37-113 (379)
95 PRK14299 chaperone protein Dna 98.9 2.4E-09 5.3E-14 102.1 6.0 85 193-351 198-282 (291)
96 KOG1150 Predicted molecular ch 98.9 2.2E-09 4.7E-14 93.8 4.5 64 76-139 52-117 (250)
97 KOG0712 Molecular chaperone (D 98.8 5.5E-09 1.2E-13 99.8 6.5 105 224-339 145-324 (337)
98 PRK10266 curved DNA-binding pr 98.7 3.6E-08 7.9E-13 94.8 6.5 83 193-350 206-288 (306)
99 PLN03165 chaperone protein dna 98.6 7.4E-08 1.6E-12 77.9 6.1 61 221-293 40-100 (111)
100 KOG0568 Molecular chaperone (D 98.4 2.5E-07 5.3E-12 82.8 4.9 55 77-131 47-102 (342)
101 TIGR03835 termin_org_DnaJ term 98.2 2.1E-06 4.6E-11 89.2 6.9 71 77-147 2-72 (871)
102 KOG1789 Endocytosis protein RM 98.2 1.9E-06 4.1E-11 91.2 5.1 52 77-130 1281-1336(2235)
103 KOG0723 Molecular chaperone (D 98.1 4.1E-06 8.8E-11 66.2 4.9 53 77-132 56-108 (112)
104 TIGR02642 phage_xxxx uncharact 98.0 4.1E-06 8.9E-11 74.1 4.1 48 266-314 100-149 (186)
105 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.9 9.6E-06 2.1E-10 59.9 2.8 44 221-275 14-66 (66)
106 COG1107 Archaea-specific RecJ- 97.5 8.2E-05 1.8E-09 75.1 3.3 68 223-291 3-80 (715)
107 KOG3192 Mitochondrial J-type c 97.1 0.00047 1E-08 58.5 3.8 67 74-140 5-79 (168)
108 PLN03165 chaperone protein dna 96.8 0.0013 2.7E-08 53.5 3.4 41 224-279 54-100 (111)
109 COG1076 DjlA DnaJ-domain-conta 96.5 0.0014 2.9E-08 57.9 2.3 53 77-129 113-173 (174)
110 TIGR02642 phage_xxxx uncharact 96.5 0.0025 5.5E-08 56.5 3.5 31 240-280 100-130 (186)
111 COG1107 Archaea-specific RecJ- 96.4 0.003 6.4E-08 64.2 4.2 45 239-293 2-67 (715)
112 KOG2813 Predicted molecular ch 96.3 0.0039 8.4E-08 58.8 3.7 31 267-300 247-277 (406)
113 KOG0431 Auxilin-like protein a 95.9 0.0083 1.8E-07 60.7 4.4 34 80-113 391-424 (453)
114 COG1076 DjlA DnaJ-domain-conta 95.5 0.0096 2.1E-07 52.5 2.6 63 78-140 2-72 (174)
115 KOG2813 Predicted molecular ch 95.0 0.012 2.5E-07 55.7 1.5 58 222-291 198-257 (406)
116 PF03656 Pam16: Pam16; InterP 94.3 0.092 2E-06 43.8 5.1 56 77-135 58-113 (127)
117 KOG0715 Molecular chaperone (D 94.1 0.082 1.8E-06 50.4 5.3 98 209-321 169-271 (288)
118 PF11833 DUF3353: Protein of u 87.2 1.2 2.7E-05 39.9 5.3 41 86-133 1-41 (194)
119 COG5552 Uncharacterized conser 85.6 2.6 5.6E-05 31.4 5.3 46 75-120 1-46 (88)
120 PF13446 RPT: A repeated domai 85.5 1.5 3.2E-05 31.5 4.1 26 78-103 6-31 (62)
121 PF10041 DUF2277: Uncharacteri 81.0 6.6 0.00014 29.5 5.9 46 75-120 1-46 (78)
122 smart00709 Zpr1 Duplicated dom 81.0 6.5 0.00014 34.2 6.9 21 295-315 80-100 (160)
123 TIGR00310 ZPR1_znf ZPR1 zinc f 79.0 13 0.00028 33.4 8.3 75 241-315 2-100 (192)
124 KOG0724 Zuotin and related mol 78.3 1.9 4.2E-05 41.9 3.2 53 88-140 3-60 (335)
125 KOG2824 Glutaredoxin-related p 76.8 2.3 5.1E-05 39.8 3.1 52 222-286 229-280 (281)
126 PRK14714 DNA polymerase II lar 75.6 1.9 4.2E-05 48.3 2.6 62 211-291 657-721 (1337)
127 KOG2824 Glutaredoxin-related p 75.3 3.6 7.8E-05 38.6 3.9 37 240-291 230-274 (281)
128 cd03031 GRX_GRX_like Glutaredo 75.1 3.6 7.8E-05 35.2 3.6 47 222-277 99-145 (147)
129 TIGR00630 uvra excinuclease AB 70.7 2.7 5.9E-05 46.6 2.2 33 241-277 738-771 (924)
130 TIGR03655 anti_R_Lar restricti 68.3 8.4 0.00018 26.7 3.6 37 240-277 2-38 (53)
131 PRK04023 DNA polymerase II lar 67.7 2.8 6E-05 46.1 1.5 64 206-290 610-674 (1121)
132 cd03031 GRX_GRX_like Glutaredo 66.0 4.8 0.0001 34.4 2.4 35 240-289 100-143 (147)
133 PRK03564 formate dehydrogenase 65.5 6.6 0.00014 37.8 3.5 41 222-274 187-235 (309)
134 PRK00349 uvrA excinuclease ABC 63.1 7.1 0.00015 43.4 3.6 34 241-278 740-774 (943)
135 PRK05978 hypothetical protein; 61.7 3.7 8.1E-05 35.1 0.9 25 241-272 35-59 (148)
136 PF03833 PolC_DP2: DNA polymer 60.3 2.9 6.2E-05 45.1 0.0 50 222-291 655-704 (900)
137 PF14687 DUF4460: Domain of un 59.3 16 0.00035 29.7 4.2 45 87-131 4-53 (112)
138 TIGR00340 zpr1_rel ZPR1-relate 55.6 49 0.0011 28.8 6.9 20 296-315 78-98 (163)
139 TIGR01562 FdhE formate dehydro 54.4 13 0.00028 35.8 3.3 28 223-250 185-221 (305)
140 PF07709 SRR: Seven Residue Re 53.9 7.6 0.00017 19.3 0.9 13 118-130 2-14 (14)
141 PRK00635 excinuclease ABC subu 53.8 7.9 0.00017 45.8 2.1 34 241-278 1609-1643(1809)
142 PF09538 FYDLN_acid: Protein o 52.5 7.8 0.00017 31.4 1.3 26 221-246 8-33 (108)
143 COG0178 UvrA Excinuclease ATPa 51.0 19 0.00042 39.1 4.2 35 240-278 731-766 (935)
144 TIGR00630 uvra excinuclease AB 50.7 6 0.00013 43.9 0.5 29 266-294 737-774 (924)
145 PRK00564 hypA hydrogenase nick 50.3 54 0.0012 26.8 6.0 29 221-249 70-98 (117)
146 PF03589 Antiterm: Antitermina 50.2 4.2 9.1E-05 32.1 -0.6 37 241-277 7-44 (95)
147 PRK00349 uvrA excinuclease ABC 48.6 11 0.00024 42.0 2.1 28 267-294 740-776 (943)
148 PF08792 A2L_zn_ribbon: A2L zi 48.5 16 0.00035 22.9 2.0 12 240-251 4-15 (33)
149 PRK12336 translation initiatio 48.3 65 0.0014 29.0 6.7 64 266-330 120-184 (201)
150 COG1198 PriA Primosomal protei 48.0 13 0.00028 40.1 2.5 53 220-289 433-485 (730)
151 PRK14559 putative protein seri 44.7 11 0.00025 40.0 1.4 49 223-288 2-50 (645)
152 PF14205 Cys_rich_KTR: Cystein 43.7 34 0.00073 24.1 3.1 13 281-293 30-42 (55)
153 PF14353 CpXC: CpXC protein 43.7 15 0.00032 30.4 1.7 12 266-277 39-50 (128)
154 PF04246 RseC_MucC: Positive r 41.4 37 0.00081 28.2 3.9 22 295-316 42-63 (135)
155 PF13453 zf-TFIIB: Transcripti 40.2 20 0.00044 23.3 1.6 8 266-273 20-27 (41)
156 COG0178 UvrA Excinuclease ATPa 38.8 22 0.00049 38.6 2.5 33 266-300 731-772 (935)
157 PF07739 TipAS: TipAS antibiot 38.8 67 0.0015 25.5 4.9 52 84-143 51-104 (118)
158 PRK00464 nrdR transcriptional 38.2 37 0.0008 29.3 3.3 35 241-275 2-38 (154)
159 PF12434 Malate_DH: Malate deh 38.2 36 0.00079 20.3 2.2 17 91-107 10-26 (28)
160 TIGR02300 FYDLN_acid conserved 37.9 18 0.00039 30.0 1.3 27 221-247 8-34 (129)
161 PRK12380 hydrogenase nickel in 37.9 42 0.0009 27.3 3.5 28 221-249 69-96 (113)
162 PF07295 DUF1451: Protein of u 36.6 36 0.00077 29.1 3.0 39 232-278 105-143 (146)
163 PRK13130 H/ACA RNA-protein com 35.0 30 0.00066 24.5 1.9 9 266-274 18-26 (56)
164 COG5349 Uncharacterized protei 34.3 12 0.00025 30.9 -0.4 25 241-272 23-47 (126)
165 PF13719 zinc_ribbon_5: zinc-r 34.2 26 0.00056 22.4 1.4 7 266-272 26-32 (37)
166 PF03367 zf-ZPR1: ZPR1 zinc-fi 33.7 49 0.0011 28.7 3.5 37 240-276 2-41 (161)
167 PRK14873 primosome assembly pr 33.5 38 0.00082 36.3 3.2 53 220-290 381-433 (665)
168 PF07092 DUF1356: Protein of u 32.4 23 0.00049 32.8 1.2 11 241-251 40-50 (238)
169 PRK03681 hypA hydrogenase nick 31.8 58 0.0013 26.5 3.4 29 221-249 69-97 (114)
170 TIGR00595 priA primosomal prot 30.0 40 0.00087 34.8 2.7 52 221-289 212-263 (505)
171 PF09862 DUF2089: Protein of u 30.0 48 0.001 27.0 2.6 7 242-248 1-7 (113)
172 PF07191 zinc-ribbons_6: zinc- 29.8 64 0.0014 24.0 2.9 50 224-287 3-58 (70)
173 smart00276 GLECT Galectin. Gal 28.3 79 0.0017 25.9 3.7 41 298-338 2-48 (128)
174 PF08271 TF_Zn_Ribbon: TFIIB z 28.1 44 0.00096 21.9 1.8 9 241-249 2-10 (43)
175 cd01388 SOX-TCF_HMG-box SOX-TC 27.9 1.3E+02 0.0028 21.9 4.4 41 96-140 14-54 (72)
176 PF01155 HypA: Hydrogenase exp 27.9 48 0.001 26.9 2.3 28 221-249 69-96 (113)
177 COG2260 Predicted Zn-ribbon RN 27.6 39 0.00085 24.1 1.4 10 266-275 18-27 (59)
178 PF07092 DUF1356: Protein of u 27.5 25 0.00055 32.5 0.6 15 266-280 39-53 (238)
179 cd00084 HMG-box High Mobility 26.6 1.4E+02 0.003 20.6 4.3 42 95-140 12-53 (66)
180 PRK00635 excinuclease ABC subu 26.3 20 0.00043 42.7 -0.4 28 266-293 1608-1644(1809)
181 TIGR00100 hypA hydrogenase nic 26.3 88 0.0019 25.4 3.6 8 222-229 70-77 (115)
182 COG3809 Uncharacterized protei 26.0 58 0.0013 24.7 2.2 8 266-273 22-29 (88)
183 smart00440 ZnF_C2C2 C2C2 Zinc 25.9 1.3E+02 0.0028 19.5 3.6 12 241-252 2-13 (40)
184 PF09855 DUF2082: Nucleic-acid 25.8 1E+02 0.0022 22.5 3.4 8 266-273 37-44 (64)
185 PRK11032 hypothetical protein; 25.6 73 0.0016 27.7 3.1 16 93-108 3-18 (160)
186 PRK05580 primosome assembly pr 24.9 45 0.00098 35.8 2.1 51 222-289 381-431 (679)
187 KOG3442 Uncharacterized conser 24.8 1.1E+02 0.0024 25.3 3.8 53 77-132 59-111 (132)
188 cd01390 HMGB-UBF_HMG-box HMGB- 24.8 1.5E+02 0.0033 20.5 4.3 40 98-141 15-54 (66)
189 PF01096 TFIIS_C: Transcriptio 24.8 1.2E+02 0.0026 19.5 3.3 15 241-255 2-16 (39)
190 PF12387 Peptidase_C74: Pestiv 23.0 41 0.00089 29.4 1.0 26 223-252 163-188 (200)
191 PF14354 Lar_restr_allev: Rest 22.3 1E+02 0.0022 21.6 2.8 8 266-273 30-37 (61)
192 KOG3960 Myogenic helix-loop-he 22.2 46 0.001 30.9 1.2 19 117-135 128-151 (284)
193 cd01389 MATA_HMG-box MATA_HMG- 21.5 2.1E+02 0.0045 21.0 4.6 42 95-140 13-54 (77)
194 smart00350 MCM minichromosome 21.2 2.9E+02 0.0063 28.5 7.1 14 262-275 56-71 (509)
195 smart00659 RPOLCX RNA polymera 21.1 75 0.0016 21.2 1.8 7 267-273 21-27 (44)
196 PRK00398 rpoP DNA-directed RNA 20.9 75 0.0016 21.1 1.8 8 266-273 22-29 (46)
197 PRK10862 SoxR reducing system 20.7 2.1E+02 0.0045 24.6 5.0 20 295-314 49-68 (154)
198 PF13717 zinc_ribbon_4: zinc-r 20.6 64 0.0014 20.5 1.3 7 266-272 26-32 (36)
199 COG1198 PriA Primosomal protei 20.6 59 0.0013 35.2 1.8 42 220-274 442-484 (730)
200 PF10080 DUF2318: Predicted me 20.5 62 0.0013 25.9 1.5 23 223-245 36-58 (102)
201 COG3058 FdhE Uncharacterized p 20.5 8.5 0.00019 36.2 -3.8 45 220-276 183-236 (308)
202 PF08274 PhnA_Zn_Ribbon: PhnA 20.5 51 0.0011 20.2 0.8 6 267-272 21-26 (30)
203 COG2879 Uncharacterized small 20.5 1.7E+02 0.0037 21.2 3.6 26 97-123 27-52 (65)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-77 Score=570.17 Aligned_cols=283 Identities=48% Similarity=0.888 Sum_probs=257.2
Q ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC
Q 017647 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG 152 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~ 152 (368)
++.+|||+||||+++||++|||+|||+||++||||+|+ +++|+++|++|+|||||||||+||++||+||+++++.+..+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 46789999999999999999999999999999999999 78999999999999999999999999999999998733222
Q ss_pred C--CCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647 153 G--SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (368)
Q Consensus 153 ~--~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G 230 (368)
+ .+.|..++.|||++|||++.+ +++++..+.++.||.+.|+|+|+||++|+++++.+.+...|..|+|
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~----------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G 150 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGG----------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG 150 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCc----------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence 2 222333578899999973211 1223334678999999999999999999999999999999999999
Q ss_pred CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (368)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~ 310 (368)
+|++.+..+.+|++|+|+|.+...+++ |+|+++++|+.|+|+|.+++++|.+|+|.|++.+.++|+|+||+|+.+|++
T Consensus 151 sGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ 228 (371)
T COG0484 151 SGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR 228 (371)
T ss_pred CCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence 999999999999999999999887777 889999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|++.|+|+++.+++++|||||+|.|++|+.|.|+|+|||++++|++.+|+||++|+|+
T Consensus 229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vp 286 (371)
T COG0484 229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVP 286 (371)
T ss_pred EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEE
Confidence 9999999999988899999999999999999999999999999999999999999885
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-66 Score=507.78 Aligned_cols=280 Identities=38% Similarity=0.699 Sum_probs=241.9
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--CC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~--~~ 153 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||+||++||+||+++++.+.+ ++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 4699999999999999999999999999999999988889999999999999999999999999999987753211 11
Q ss_pred CCCCc-----------CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecce
Q 017647 154 SSAYT-----------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (368)
Q Consensus 154 ~~~~~-----------~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~ 222 (368)
.+.+. .++.|+|+.|||++ .+ ......++.|+++.|.|+|+|+|+|+++++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg-----------~~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~ 149 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN-----------KS--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLL 149 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCC-----------cc--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeee
Confidence 01110 01113444444310 00 11123568999999999999999999999999999
Q ss_pred eecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeC
Q 017647 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (368)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip 302 (368)
+.|..|+|+|...+....+|+.|+|+|.++..+++++.+++++.+|+.|+|+|+++.+.|..|+|.+.+.+.++++|.||
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 229 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIP 229 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEEC
Confidence 99999999999988889999999999999888777775566678999999999999999999999999999999999999
Q ss_pred CCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccc-cCceEEEeccCHhhhccCCeEEeC
Q 017647 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~-g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+++|++|+|+|+|++...++.+|||||+|+|++|+.|+|+ |+|||++++|+|+|||||+++.|+
T Consensus 230 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~ 296 (372)
T PRK14296 230 KGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIK 296 (372)
T ss_pred CCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEee
Confidence 999999999999999997667789999999999999999995 899999999999999999999885
No 3
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-65 Score=503.03 Aligned_cols=280 Identities=46% Similarity=0.839 Sum_probs=248.4
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCC--
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-- 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~-- 153 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||+++++.+.++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 469999999999999999999999999999999998778899999999999999999999999999998776321110
Q ss_pred --CCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647 154 --SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (368)
Q Consensus 154 --~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~ 231 (368)
.+.+ .++.|+|++|||++ + + . . .....++.|+++.|.|+|+|+|+|+++++.+.+.+.|..|+|+
T Consensus 84 ~~~~~~-~~~~d~f~~~Fgg~--~--~-----~-~--~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~ 150 (377)
T PRK14298 84 FRGADF-GGFGDIFEMFFGGG--G--R-----R-G--RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGT 150 (377)
T ss_pred cccCCc-CcchhhhHhhhcCC--C--c-----c-C--CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCC
Confidence 0011 12346778787631 0 0 0 0 1123578999999999999999999999999999999999999
Q ss_pred ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i 311 (368)
|...+....+|+.|+|+|.++..+++++|+++++.+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||||+++|++|
T Consensus 151 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i 230 (377)
T PRK14298 151 GAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL 230 (377)
T ss_pred cccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence 99998888999999999999988888888898889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|+|++...++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 231 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 287 (377)
T PRK14298 231 KLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVP 287 (377)
T ss_pred EEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEe
Confidence 999999997767889999999999999999999999999999999999999999884
No 4
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-65 Score=500.70 Aligned_cols=281 Identities=45% Similarity=0.879 Sum_probs=249.3
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-CC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~~ 154 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+.+.++++|++|++||++|+||.+|++||+||+++++.+.++ +.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 46999999999999999999999999999999999877889999999999999999999999999999877643211 11
Q ss_pred CCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccc
Q 017647 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (368)
Q Consensus 155 ~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~ 234 (368)
+.|. ++.|+|+.|||++. +. +. .....++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 83 ~~f~-~~~d~f~~~fgg~~----~~-----~~--~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 150 (371)
T PRK14287 83 GDFG-GFSDIFDMFFGGGG----GR-----RN--PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAK 150 (371)
T ss_pred cccc-chHHHHHhhhcccc----CC-----CC--CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccC
Confidence 1121 23478888887310 00 00 1113468999999999999999999999999999999999999999
Q ss_pred cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (368)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (368)
.+....+|+.|+|+|.++..+++++|+++++.+|+.|.|+|+++.+.|..|.|.+.+.+.++++|.||+|+++|++|+|+
T Consensus 151 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 230 (371)
T PRK14287 151 PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230 (371)
T ss_pred CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence 88888999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 284 (371)
T PRK14287 231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVP 284 (371)
T ss_pred cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEE
Confidence 999998766789999999999999999999999999999999999999999874
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-65 Score=501.46 Aligned_cols=278 Identities=35% Similarity=0.642 Sum_probs=236.4
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~ 154 (368)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+||+++++.+.+ +.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQ 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Cc
Confidence 579999999999999999999999999999999997 4678999999999999999999999999999987763211 11
Q ss_pred CCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccc
Q 017647 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (368)
Q Consensus 155 ~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~ 234 (368)
..| .++|+.|++||+..||+ ++ . ...+....++.|+++.|.|+|+|+|+|+++++.+.+.+.|..|+|+|..
T Consensus 81 ~~~-~~~f~~~~~~F~~~fg~-g~---~---~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 152 (369)
T PRK14288 81 SDF-SDFFEDLGSFFEDAFGF-GA---R---GSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK 152 (369)
T ss_pred ccc-ccchhhHHHHHHhhcCC-CC---c---ccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccC
Confidence 112 12333333444432221 00 0 0011123468999999999999999999999999999999999999998
Q ss_pred cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (368)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (368)
.. ...+|+.|+|+|.++..+ |+++++++|+.|+|+|+++.+.|..|.|.+++.+.++++|.||+|+++|++|+|+
T Consensus 153 ~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~ 227 (369)
T PRK14288 153 DK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK 227 (369)
T ss_pred CC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence 76 578999999999876543 6777778999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|++.+ ++.+|||||+|+|++|+.|+|+|+|||++++|+|.|||||+++.|+
T Consensus 228 g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~ 280 (369)
T PRK14288 228 NKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVP 280 (369)
T ss_pred cCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEee
Confidence 9999966 5779999999999999999999999999999999999999999885
No 6
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-65 Score=501.10 Aligned_cols=282 Identities=45% Similarity=0.844 Sum_probs=249.7
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC---
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG--- 152 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~--- 152 (368)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|++||+||+++++.+.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 46999999999999999999999999999999999888899999999999999999999999999999887643211
Q ss_pred CCCCCc-----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647 153 GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (368)
Q Consensus 153 ~~~~~~-----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~ 227 (368)
+.+.|. .++.|+|++|||++. + .+......++.|+.+.|.|+|||+|+|+++++.+.+.+.|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~----~-------~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~ 151 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGGG----A-------RRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHT 151 (380)
T ss_pred CCCCccccccccchhhHHHHHhCccc----c-------ccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCC
Confidence 111111 123467777876310 0 000112347899999999999999999999999999999999
Q ss_pred ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (368)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~ 307 (368)
|+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.++++|.||+|+++
T Consensus 152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (380)
T PRK14276 152 CNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVET 231 (380)
T ss_pred CcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccC
Confidence 99999998888899999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 232 G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~ 292 (380)
T PRK14276 232 GQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVP 292 (380)
T ss_pred CcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEE
Confidence 9999999999998766778999999999999999999999999999999999999999884
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-65 Score=499.36 Aligned_cols=281 Identities=49% Similarity=0.910 Sum_probs=249.3
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC--
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS-- 154 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~-- 154 (368)
.|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|++||+||+++++.+.+++.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~ 83 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFG 83 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCC
Confidence 699999999999999999999999999999999988889999999999999999999999999999988764321110
Q ss_pred -CCCc--CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647 155 -SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (368)
Q Consensus 155 -~~~~--~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~ 231 (368)
..|. .++.|+|+.|||++ + . ........++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 84 ~~~~~~~~~~~d~f~~~fgg~--~--~-------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~ 152 (376)
T PRK14280 84 GGDFGGGFGFEDIFSSFFGGG--G--R-------RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGS 152 (376)
T ss_pred CCCccccccchhhHHHHhCCc--c--c-------cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCc
Confidence 1111 13447788888631 1 0 0001123478999999999999999999999999999999999999
Q ss_pred ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i 311 (368)
|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|.++...|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus 153 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i 232 (376)
T PRK14280 153 GAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQI 232 (376)
T ss_pred ccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEE
Confidence 99988888999999999999988899999999889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 233 ~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 289 (376)
T PRK14280 233 RVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVP 289 (376)
T ss_pred EEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEe
Confidence 999999998767788999999999999999999999999999999999999999874
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.4e-65 Score=497.79 Aligned_cols=282 Identities=43% Similarity=0.746 Sum_probs=247.3
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGS 154 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~~ 154 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++....+.. ++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 4699999999999999999999999999999999987788999999999999999999999999999864321110 110
Q ss_pred C-CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcc
Q 017647 155 S-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (368)
Q Consensus 155 ~-~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~ 233 (368)
+ .| .++.|+|+.|||++ +. + ........++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 82 ~~~f-~~~~d~f~~ffgg~-g~--~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~ 150 (378)
T PRK14278 82 GGGF-GGLGDVFEAFFGGG-AA--S-------RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT 150 (378)
T ss_pred CcCc-CchhHHHHHHhCCC-CC--C-------CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence 1 11 12347788888731 10 0 000112356899999999999999999999999999999999999999
Q ss_pred ccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEE
Q 017647 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (368)
Q Consensus 234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l 313 (368)
..+....+|+.|+|+|.++..+++.+|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||||+++|++|+|
T Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 230 (378)
T PRK14278 151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL 230 (378)
T ss_pred CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence 98888999999999999988888999999988999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 314 ~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 285 (378)
T PRK14278 231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVE 285 (378)
T ss_pred ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEe
Confidence 9999998777778999999999999999999999999999999999999999875
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-64 Score=494.89 Aligned_cols=283 Identities=43% Similarity=0.829 Sum_probs=245.5
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-- 151 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-- 151 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|++||+||+++++....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 4699999999999999999999999999999999874 468899999999999999999999999999887652110
Q ss_pred CCCCCC-cC------CCc--cccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecce
Q 017647 152 GGSSAY-TT------NPF--DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (368)
Q Consensus 152 ~~~~~~-~~------~~~--d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~ 222 (368)
++.+.+ .. ++| |+|+.|||+. + +. ...+....++.|+++.|.|+|+|+|+|+++++.+.+.
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~-~---~~------~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~ 152 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGER-R---TQ------EEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRY 152 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhccc-C---Cc------ccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeec
Confidence 011111 10 111 4555565421 0 00 0011223578999999999999999999999999999
Q ss_pred eecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeC
Q 017647 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (368)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip 302 (368)
+.|+.|+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|+|.+++.+.++++|.||
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 232 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP 232 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeC
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+++|++|+|+|+|++.+.++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 233 ~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~ 298 (369)
T PRK14282 233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVP 298 (369)
T ss_pred CCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEe
Confidence 999999999999999998777789999999999999999999999999999999999999999874
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-64 Score=498.63 Aligned_cols=286 Identities=44% Similarity=0.868 Sum_probs=248.5
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCccccc-CC
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GG 152 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~-~~ 152 (368)
+..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+++++.+. ++
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 35799999999999999999999999999999999974 57889999999999999999999999999998776321 10
Q ss_pred C--C-CCC-----c---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecc
Q 017647 153 G--S-SAY-----T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSH 221 (368)
Q Consensus 153 ~--~-~~~-----~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~ 221 (368)
+ . +.+ . .++.|+|++||+..+|+ + +........++.|+++.|.|+|+|+|+|+++++.+.+
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg----~----~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r 154 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGT----G----RRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVER 154 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhcccccC----C----CcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEe
Confidence 0 0 111 1 11225677777643221 0 0001112347899999999999999999999999999
Q ss_pred eeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEe
Q 017647 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV 301 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~I 301 (368)
.+.|+.|+|+|...+....+|+.|+|+|.++..+++++|++++..+|+.|+|+|.++.+.|..|+|.+.+.+.+.++|.|
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 234 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI 234 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence 99999999999998888899999999999999999999999998999999999999999999999999999999999999
Q ss_pred CCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 302 p~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 235 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 301 (386)
T PRK14277 235 PAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIP 301 (386)
T ss_pred CCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEE
Confidence 9999999999999999997666778999999999999999999999999999999999999999884
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-64 Score=494.19 Aligned_cols=282 Identities=47% Similarity=0.869 Sum_probs=243.3
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-C
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~ 153 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+++++.+.++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 4699999999999999999999999999999999974 6789999999999999999999999999999887632111 1
Q ss_pred CCC---Cc---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647 154 SSA---YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (368)
Q Consensus 154 ~~~---~~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~ 227 (368)
.+. +. .++.|+|+.|||+..++. + . ........++.|+++.|.|+|||+|+|+++++.+.+.+.|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~----~-~--~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~ 155 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGG----S-G--GGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVD 155 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCC----C-c--ccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCC
Confidence 111 11 133477888887421110 0 0 001112357899999999999999999999999999999999
Q ss_pred ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (368)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~ 307 (368)
|+|+|...+....+|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|..|+|.+.+.+.++++|.||+|+++
T Consensus 156 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (372)
T PRK14286 156 CNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVET 231 (372)
T ss_pred CcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCC
Confidence 9999999888889999999999886643 778888999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 232 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (372)
T PRK14286 232 GSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVP 292 (372)
T ss_pred CCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEe
Confidence 9999999999998766778999999999999999999999999999999999999999884
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-64 Score=493.78 Aligned_cols=284 Identities=45% Similarity=0.864 Sum_probs=249.0
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC---
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--- 151 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~--- 151 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|++||+||+++++.+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 3699999999999999999999999999999999974 578899999999999999999999999999988763211
Q ss_pred CCCCCCc----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647 152 GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (368)
Q Consensus 152 ~~~~~~~----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~ 227 (368)
++.+.+. .++.|+|++|||+.+++ . +. +.....++.|+++.|.|+|||+|+|+++++.+.+.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~---~-----~~-~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 153 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGS---S-----SR-RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCET 153 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccc---c-----cc-ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCC
Confidence 1111111 12347788888742111 0 00 1112357899999999999999999999999999999999
Q ss_pred ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (368)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~ 307 (368)
|+|+|...+....+|+.|+|.|.++..+++++|++++..+|+.|+|+|.++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus 154 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~ 233 (380)
T PRK14297 154 CNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDT 233 (380)
T ss_pred cccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCC
Confidence 99999998888899999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 234 G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~ 294 (380)
T PRK14297 234 GNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVP 294 (380)
T ss_pred CcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEE
Confidence 9999999999997766778999999999999999999999999999999999999999874
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-64 Score=495.63 Aligned_cols=290 Identities=38% Similarity=0.696 Sum_probs=236.8
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-- 151 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-- 151 (368)
+..|||+||||+++|+.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||+||++||+||+++...+..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 5689999999999999999999999999999999997 4578999999999999999999999999999753321110
Q ss_pred -----CCCCCCc-------CCCccccccccCCCCCCC----CCCCCCCCCCccCcccccCcceEEEEeeeccccccccee
Q 017647 152 -----GGSSAYT-------TNPFDLFETFFGPSMGGF----PGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK 215 (368)
Q Consensus 152 -----~~~~~~~-------~~~~d~F~~fFg~~~g~~----~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~ 215 (368)
++.+.|. .++.++|+..++...++| +++++.+.+..+.....++.|+++.|.|+|+|+|+|+++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~ 166 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM 166 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence 0001111 111222221111111111 111100000011122357899999999999999999999
Q ss_pred eEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEee
Q 017647 216 EFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 295 (368)
Q Consensus 216 ~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~ 295 (368)
++.+.+.+.|+.|+|+|...+..+.+|+.|+|+|.++... |+++++.+|+.|+|+|+++.+.|..|.|.+.+.+.+
T Consensus 167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR 242 (392)
T ss_pred EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEee
Confidence 9999999999999999999888899999999999887643 667778999999999999999999999999999999
Q ss_pred EEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 296 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+++|.||+|+++|++|+|+|+|++.+++..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~ 315 (392)
T PRK14279 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVP 315 (392)
T ss_pred eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEE
Confidence 9999999999999999999999998877778999999999999999999999999999999999999999874
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-64 Score=490.19 Aligned_cols=278 Identities=36% Similarity=0.727 Sum_probs=241.1
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-C
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~ 153 (368)
..|||+||||+++||.+|||+|||+||++||||+|+. +.+.++|++|++||+||+||.+|+.||+||+++++.+.+. +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 4699999999999999999999999999999999874 5688999999999999999999999999999877532110 1
Q ss_pred -CCCC---c---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecc
Q 017647 154 -SSAY---T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE 226 (368)
Q Consensus 154 -~~~~---~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~ 226 (368)
.+.+ . .++.|+|++|||+..+ + . +.....++.|++++|.|+|||+|+|+++++.+.+.+.|.
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~--------~--~-~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~ 150 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRG--------Q--D-KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE 150 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcC--------C--C-CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence 0111 1 1223567777763110 0 0 011134789999999999999999999999999999999
Q ss_pred cccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCc
Q 017647 227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306 (368)
Q Consensus 227 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~ 306 (368)
.|+|+|...+....+|+.|+|+|.++. .+|+++++.+|+.|+|.|.++.+.|..|+|.|.+.+.++++|.||+|++
T Consensus 151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 226 (365)
T PRK14285 151 SCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID 226 (365)
T ss_pred CCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence 999999998888899999999998764 4588877899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 307 ~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 227 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~ 288 (365)
T PRK14285 227 DNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQ 288 (365)
T ss_pred CCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEE
Confidence 99999999999998766778999999999999999999999999999999999999999885
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.2e-63 Score=493.33 Aligned_cols=268 Identities=34% Similarity=0.601 Sum_probs=236.2
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS 155 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~ 155 (368)
..|||+||||+++||.+|||+|||+||++||||+|+ ..++|++|++||+||+||.+|+.||+||+++++.+. +
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~---~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~--~-- 99 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG---DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE--Q-- 99 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc---hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC--C--
Confidence 579999999999999999999999999999999985 358999999999999999999999999988765321 1
Q ss_pred CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcccc
Q 017647 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (368)
Q Consensus 156 ~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~ 235 (368)
..++.|+|+.||+++. . +....++.|+.+.|.|+|+|+|+|+++++.+.+.+.|..|+|+|...
T Consensus 100 --~~d~~d~f~~~Fggg~------------~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 163 (421)
T PTZ00037 100 --PADASDLFDLIFGGGR------------K--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPK 163 (421)
T ss_pred --CcchhhhHHHhhcccc------------c--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCC
Confidence 1345678888886310 0 01134689999999999999999999999999999999999999865
Q ss_pred CceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc--eeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEE
Q 017647 236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (368)
Q Consensus 236 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l 313 (368)
+ ...+|+.|+|+|.++...++++.+++++.+|+.|+|+|+++. +.|..|+|.|++.+.++++|.||+|+++|++|+|
T Consensus 164 ~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~ 242 (421)
T PTZ00037 164 D-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITF 242 (421)
T ss_pred C-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEE
Confidence 4 578999999999987777666533455689999999999986 7999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 314 ~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|++.+ ++.+|||||+|.+++|+.|+|+|+|||+++.|+|+|||||+++.|+
T Consensus 243 ~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~ 296 (421)
T PTZ00037 243 HGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYIT 296 (421)
T ss_pred ecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEee
Confidence 99999976 5789999999999999999999999999999999999999999885
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-63 Score=489.03 Aligned_cols=281 Identities=43% Similarity=0.806 Sum_probs=238.4
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-CC
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~~ 154 (368)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.++++|++|++||++|+|+.+|+.||+||++++..+.++ +.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 389999999999999999999999999999999974 5788999999999999999999999999998876432110 00
Q ss_pred CCCc--CCC---------------ccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeE
Q 017647 155 SAYT--TNP---------------FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEF 217 (368)
Q Consensus 155 ~~~~--~~~---------------~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~ 217 (368)
+.+. .++ .|+|+.||++..+++++ ........++.|+++.|.|+|||+|+|+++++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i 153 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-------RGGPAGARQGASKKVHITLSFEEAAKGVEKEL 153 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEE
Confidence 1111 011 24444454421000100 00011235689999999999999999999999
Q ss_pred eecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEE
Q 017647 218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI 297 (368)
Q Consensus 218 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l 297 (368)
.+.+.+.|+.|+|+|...+....+|+.|+|+|.++... |++++..+|+.|+|+|.++.+.|..|.|.+.+.+.+++
T Consensus 154 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l 229 (391)
T PRK14284 154 LVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSV 229 (391)
T ss_pred EEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEE
Confidence 99999999999999999988899999999999887543 77888899999999999999999999999999999999
Q ss_pred EEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 298 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 298 ~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|.||||+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 230 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~ 300 (391)
T PRK14284 230 HVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIP 300 (391)
T ss_pred EEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEe
Confidence 99999999999999999999998877889999999999999999999999999999999999999999984
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-63 Score=484.03 Aligned_cols=280 Identities=50% Similarity=0.903 Sum_probs=241.2
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~ 154 (368)
..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+||+++++.+..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 4699999999999999999999999999999999974 678899999999999999999999999999988763211111
Q ss_pred CCCc---CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647 155 SAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (368)
Q Consensus 155 ~~~~---~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~ 231 (368)
+.+. .++.|+|++|||. ++. . +.+......++.|+++.|.|+|||+|+|+++++.+.+.+.|..|+|+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~--g~~---~----~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~ 153 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGF--GGG---R----RGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS 153 (366)
T ss_pred CccccchhhhhhhHHHhhcc--CCC---c----CCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence 1221 1223667777751 110 0 00011123568999999999999999999999999999999999999
Q ss_pred ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i 311 (368)
|........+|+.|+|.|.++.. .|++++..+|+.|+|+|+++.+.|..|+|.+.+.+.+.++|.||+|+++|++|
T Consensus 154 G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 229 (366)
T PRK14294 154 GCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL 229 (366)
T ss_pred cccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEE
Confidence 99988888999999999988653 27788889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|+|++.+.++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 230 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 286 (366)
T PRK14294 230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVP 286 (366)
T ss_pred EEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEE
Confidence 999999998777789999999999999999999999999999999999999999874
No 18
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=7.2e-63 Score=482.08 Aligned_cols=282 Identities=54% Similarity=0.972 Sum_probs=247.8
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCCCC
Q 017647 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY 157 (368)
Q Consensus 78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~~~ 157 (368)
|||+||||+++|+.+|||+|||+||++||||+++.+.+.++|++|++||++|+|+.+|++||+||+++++.+..+..+.|
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999987778999999999999999999999999999988753211101111
Q ss_pred ---c----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647 158 ---T----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (368)
Q Consensus 158 ---~----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G 230 (368)
. .++.|+|+.|||+.+++ + ..+.....++.|++++|.|+|+|+|+|+++++.+.+.+.|..|+|
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~g~-------~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G 151 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGGGS-------G--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHG 151 (354)
T ss_pred CCccccCcCchhhhHHHHhccCccc-------C--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCC
Confidence 1 12346777787632110 0 001122357899999999999999999999999999999999999
Q ss_pred CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (368)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~ 310 (368)
+|...+....+|+.|+|+|.++..+++++|+++++.+|+.|.|+|+++.+.|..|.|.+.+.+.+.++|.||+|+++|++
T Consensus 152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 231 (354)
T TIGR02349 152 TGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQR 231 (354)
T ss_pred CCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCE
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|+|+|++...+..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 232 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~ 289 (354)
T TIGR02349 232 LRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVP 289 (354)
T ss_pred EEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 9999999987666778999999999999999999999999999999999999999874
No 19
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.9e-63 Score=487.02 Aligned_cols=292 Identities=43% Similarity=0.780 Sum_probs=245.5
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~ 153 (368)
..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||++|+||.+|+.||+||+++++.... ++
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 4699999999999999999999999999999999974 568899999999999999999999999999987763211 11
Q ss_pred CCCCc---CCCccc---cccccCCCCCC-------CCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeec
Q 017647 154 SSAYT---TNPFDL---FETFFGPSMGG-------FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELS 220 (368)
Q Consensus 154 ~~~~~---~~~~d~---F~~fFg~~~g~-------~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~ 220 (368)
...|. .+..|+ |++|||+..+. |.++...+....++....++.|+++.|.|+|||+|+|+++++.+.
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 11111 112233 45778642110 000000000000111224689999999999999999999999999
Q ss_pred ceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEE
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~ 300 (368)
+.+.|..|+|+|...+ ...+|+.|+|.|.+...+++.+|+++++.+|+.|+|.|.++.+.|..|.|.+.+.+.++++|.
T Consensus 162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 240 (397)
T PRK14281 162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240 (397)
T ss_pred eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence 9999999999999876 578999999999999888999999998899999999999999999999999999999999999
Q ss_pred eCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 301 VPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 301 Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
||+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 308 (397)
T PRK14281 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVP 308 (397)
T ss_pred cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEee
Confidence 99999999999999999998767789999999999999999999999999999999999999999884
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-62 Score=484.03 Aligned_cols=290 Identities=42% Similarity=0.768 Sum_probs=240.1
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhcc----ccccCcccc
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQ----YGEAGVKST 149 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~----~g~~g~~~~ 149 (368)
+..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|++||+ ||+++++.+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 56799999999999999999999999999999999874 5689999999999999999999999999 998887632
Q ss_pred cCCC-CCCCcCCCccccccccCCC-CCCC----CCCCCCCCCC-ccCcccccCcceEEEEeeecccccccceeeEeecce
Q 017647 150 VGGG-SSAYTTNPFDLFETFFGPS-MGGF----PGMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (368)
Q Consensus 150 ~~~~-~~~~~~~~~d~F~~fFg~~-~g~~----~g~~~~~~~~-~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~ 222 (368)
.+++ .+.|..++.++|..+++.+ ++++ ..++...|+. .......++.|+++.|.|+|||+|+|+++++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 1111 1122223344443321100 0000 0000000110 011223578999999999999999999999999999
Q ss_pred eecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeC
Q 017647 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (368)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip 302 (368)
+.|+.|+|+|...+....+|+.|+|+|.++... |+|+++.+|+.|+|+|.++.+.|..|.|.+++.+.++++|.||
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip 242 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP 242 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence 999999999999988889999999999987643 5677778999999999999999999999999999999999999
Q ss_pred CCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 303 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+++|++|+|+|+|++.+.+..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~ 308 (389)
T PRK14295 243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVP 308 (389)
T ss_pred CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEE
Confidence 999999999999999998777788999999999999999999999999999999999999999884
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-62 Score=482.60 Aligned_cols=281 Identities=45% Similarity=0.834 Sum_probs=238.9
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~ 154 (368)
..|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||+||+||.+|+.||+||+++++.+. +.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--~~ 80 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--GF 80 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--CC
Confidence 4799999999999999999999999999999999874 56889999999999999999999999999998876321 11
Q ss_pred CCCc--CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCc
Q 017647 155 SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (368)
Q Consensus 155 ~~~~--~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G 232 (368)
+.|. .++|+.|+++|+..+| +++.+ ..+.....++.|+++.|.|+|+|+|+|+++++.+.+.+.|..|+|+|
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg-~g~~~-----~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G 154 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFG-FSGGG-----SRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG 154 (373)
T ss_pred CCcccccccccchHHHHHHHhh-ccCcc-----cccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence 1221 1223223333332111 00000 00111235789999999999999999999999999999999999999
Q ss_pred cccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEE
Q 017647 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~ 312 (368)
...+....+|+.|+|+|.+... .|+++++.+|+.|+|+|+++.+.|..|+|.+++.+.++++|.||+|+++|++|+
T Consensus 155 ~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 230 (373)
T PRK14301 155 AAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230 (373)
T ss_pred cCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEE
Confidence 9988888999999999988653 277888899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|+|++.+.++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 231 ~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~ 286 (373)
T PRK14301 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVP 286 (373)
T ss_pred EeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEe
Confidence 99999998767779999999999999999999999999999999999999999884
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-62 Score=481.55 Aligned_cols=288 Identities=43% Similarity=0.795 Sum_probs=241.4
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC--CC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~--~~ 153 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++..+.+ ++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 5799999999999999999999999999999999988889999999999999999999999999999987653211 11
Q ss_pred CCCCc----CCCccccccccCCC-CCC-CCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccc
Q 017647 154 SSAYT----TNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (368)
Q Consensus 154 ~~~~~----~~~~d~F~~fFg~~-~g~-~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~ 227 (368)
...|. .++.|+|++||+.. +++ |++....+.+........++.|+++.|.|+|+|+|+|+++++.+.+.+.|..
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 11121 23346677764321 011 1111000000000112347899999999999999999999999999999999
Q ss_pred ccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (368)
Q Consensus 228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~ 307 (368)
|+|+|...+....+|+.|+|+|.++.. .|+++++.+|+.|+|.|. +.+.|..|+|.+++.+.++++|.||||+++
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 236 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN 236 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence 999999988889999999999987764 367777899999999995 788999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~ 297 (382)
T PRK14291 237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVP 297 (382)
T ss_pred CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEe
Confidence 9999999999998777889999999999999999999999999999999999999999885
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.8e-62 Score=477.43 Aligned_cols=282 Identities=39% Similarity=0.781 Sum_probs=242.7
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccccc--C--
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--G-- 151 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~--~-- 151 (368)
..|||+||||+++||.+|||+|||+||++||||+++.+.++++|++|++||++|+|+.+|++||+||+++++... +
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 469999999999999999999999999999999998777899999999999999999999999999998775321 1
Q ss_pred CCCCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCC
Q 017647 152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (368)
Q Consensus 152 ~~~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~ 231 (368)
++.+.+..++.++|++||+..+|+. . .........++.|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~---~----~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~ 154 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGS---R----RSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS 154 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCC---C----CCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence 1111222233356777776432210 0 00010112468899999999999999999999999999999999999
Q ss_pred ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEE
Q 017647 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i 311 (368)
|...+....+|+.|+|+|.++.. +|++++..+|+.|+|.|+++.+.|..|+|.|++.+.+.++|.||+|+++|++|
T Consensus 155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 230 (372)
T PRK14300 155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230 (372)
T ss_pred ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence 99988889999999999987653 37888889999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|+|++...++.+|||||+|.|++|+.|+|+|+||++++.|+|.+||+|+++.|+
T Consensus 231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~ 287 (372)
T PRK14300 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVP 287 (372)
T ss_pred EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEe
Confidence 999999997767789999999999999999999999999999999999999999874
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-61 Score=475.60 Aligned_cols=280 Identities=47% Similarity=0.869 Sum_probs=238.4
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~ 153 (368)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+|+.+|+.||+||++++..+.+ ++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 4699999999999999999999999999999999873 568899999999999999999999999999987753211 11
Q ss_pred CCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcc
Q 017647 154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (368)
Q Consensus 154 ~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~ 233 (368)
.+.+ .+..|+|++||+..+|+ +. + . ......++.|+++.|.|+|||+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 83 ~~~~-~~~~~~f~~~f~~~fgg--~~---~--~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~ 153 (371)
T PRK10767 83 FGGG-GGFGDIFGDIFGDIFGG--GR---G--G-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGA 153 (371)
T ss_pred CCCc-cccccchhhhhhhhccC--Cc---c--c-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCccc
Confidence 1111 01113344444432221 00 0 0 0112357899999999999999999999999999999999999999
Q ss_pred ccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEE
Q 017647 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (368)
Q Consensus 234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l 313 (368)
..+.....|+.|+|+|.++..+ |+++++.+|+.|+|+|+++.+.|..|.|.|.+.+.+.++|.||+|+++|++|+|
T Consensus 154 ~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 229 (371)
T PRK10767 154 KPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRL 229 (371)
T ss_pred CCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEE
Confidence 9888888999999999876543 777777899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 314 ~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 230 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 284 (371)
T PRK10767 230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVP 284 (371)
T ss_pred ecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 9999997766789999999999999999999999999999999999999999884
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-61 Score=473.27 Aligned_cols=288 Identities=45% Similarity=0.813 Sum_probs=244.0
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~ 154 (368)
...|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|++||+||+++++.... .
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~--~ 80 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQ--E 80 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccc--c
Confidence 36799999999999999999999999999999999987889999999999999999999999999999887652110 0
Q ss_pred CCCc-CCCccccccccCCCCCC-CCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCc
Q 017647 155 SAYT-TNPFDLFETFFGPSMGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (368)
Q Consensus 155 ~~~~-~~~~d~F~~fFg~~~g~-~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G 232 (368)
+.|. .++.++|..|++. ++. |..+ +|+........++.||+++|.|+|+|+|.|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~f~~~---~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G 156 (378)
T PRK14283 81 DIFNNINFEDIFQGFGFG-IGNIFDMF---GFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR 156 (378)
T ss_pred ccccccCccccccccccc-hhhhcccc---ccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc
Confidence 1111 1112223322210 000 0000 00000011134688999999999999999999999999999999999999
Q ss_pred cccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEE
Q 017647 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~ 312 (368)
...+....+|+.|+|+|.++...++.+|++++..+|+.|.|.|+.+.+.|..|+|.|.+.+.+.++|.||+|+++|++|+
T Consensus 157 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~ 236 (378)
T PRK14283 157 AEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLR 236 (378)
T ss_pred cCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEE
Confidence 98888889999999999999989999999998899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 237 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (378)
T PRK14283 237 VSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVP 292 (378)
T ss_pred EeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEE
Confidence 99999997766779999999999999999999999999999999999999999874
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-61 Score=473.48 Aligned_cols=293 Identities=43% Similarity=0.724 Sum_probs=247.0
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-C
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-G 152 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~ 152 (368)
...|||++|||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|++||+||+++++.+.+ +
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG 82 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence 35799999999999999999999999999999999974 578999999999999999999999999999987653211 1
Q ss_pred CCCCCcCCCccccc---cccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccccc
Q 017647 153 GSSAYTTNPFDLFE---TFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT 229 (368)
Q Consensus 153 ~~~~~~~~~~d~F~---~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~ 229 (368)
+......++.++|+ .+|++.++++.+++..+ +........++.||++.|.|+|+|+|+|+++++.+.+.+.|..|+
T Consensus 83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~-~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 161 (386)
T PRK14289 83 GFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFG-GGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH 161 (386)
T ss_pred CCCCCCcChhhhhHHhhhhhcccccCcccccccc-cccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence 11000112223433 33543222211110000 000111234688999999999999999999999999999999999
Q ss_pred CCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCC
Q 017647 230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309 (368)
Q Consensus 230 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~ 309 (368)
|+|.........|+.|+|.|.++..+++++|++++..+|+.|+|.|+++.+.|..|.|.|.+.+.+.++|.||+|+++|+
T Consensus 162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 241 (386)
T PRK14289 162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM 241 (386)
T ss_pred CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCC
Confidence 99999888889999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 310 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
+|+|+|+|++...++.+|||||+|+|++|+.|+|+++||++++.|+|.|||+|+++.|+
T Consensus 242 ~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~ 300 (386)
T PRK14289 242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVP 300 (386)
T ss_pred EEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEee
Confidence 99999999997767789999999999999999999999999999999999999999874
No 27
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9e-61 Score=469.61 Aligned_cols=287 Identities=56% Similarity=1.010 Sum_probs=248.4
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-CCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGS 154 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~-~~~ 154 (368)
..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|++||+||+++++.+.+ ++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 4699999999999999999999999999999999988889999999999999999999999999999987753211 000
Q ss_pred CCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccc
Q 017647 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (368)
Q Consensus 155 ~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~ 234 (368)
+.+ ..+.|+|++||++. ++ +++.+.. .+.....++.|+++.|.|+|||+|.|+++++.+.+.+.|..|+|+|..
T Consensus 82 ~~~-~~~~d~f~~~fg~~-~~---~~~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 155 (374)
T PRK14293 82 GDM-GGFADIFETFFSGF-GG---AGGQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAK 155 (374)
T ss_pred ccc-cchHHHHHHHhccc-CC---CCCCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCC
Confidence 111 11236788888631 11 1100000 011123468899999999999999999999999999999999999999
Q ss_pred cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (368)
Q Consensus 235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (368)
......+|+.|+|.|.++..+++++|++++..+|+.|.|.|+++.+.|.+|.|.+++.+.++++|.||||+++|++|+|+
T Consensus 156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~ 235 (374)
T PRK14293 156 PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS 235 (374)
T ss_pred CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence 88888999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+
T Consensus 236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~ 289 (374)
T PRK14293 236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVD 289 (374)
T ss_pred cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEec
Confidence 999987666678999999999999999999999999999999999999999885
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-60 Score=466.44 Aligned_cols=284 Identities=38% Similarity=0.694 Sum_probs=237.5
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG- 152 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~- 152 (368)
..|||+||||+++|+.+|||+|||+||++||||+++.. .+.++|++|++||++|+|+.+|++||+||+++++.+.++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~ 81 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF 81 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence 36999999999999999999999999999999998752 688999999999999999999999999999877531111
Q ss_pred CCCCCc--CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647 153 GSSAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (368)
Q Consensus 153 ~~~~~~--~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G 230 (368)
+.+.+. .++.|+|+.|||+.+++. .++ +.+. ......++.|+++.|.|+|+|+|.|+++++.+.+.+.|+.|+|
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~~~~~~-~~~--~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 82 NWDNFTHFSDINDIFNQIFGGNFGSD-FFS--GFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred cccccccccchhHHHHHHhcCccccc-ccc--cccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 001111 245578888887421110 000 0000 0111234789999999999999999999999999999999999
Q ss_pred CccccCceeeeCCCCCCccEEEEeeeCCCccee--eeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCC
Q 017647 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS--QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G 308 (368)
+|...+ ...+|+.|+|.|.++..+. +|++. +..+|+.|.|.|+++.+.|..|+|.+.+.+.++++|.||+|+.+|
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 234 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN 234 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence 998876 5789999999998776553 56553 358999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
++|+|+|+|+. .++.+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~ 292 (365)
T PRK14290 235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIK 292 (365)
T ss_pred cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEE
Confidence 99999999986 36789999999999999999999999999999999999999999874
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.6e-60 Score=464.00 Aligned_cols=281 Identities=41% Similarity=0.753 Sum_probs=243.5
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC-CCC
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GSS 155 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~-~~~ 155 (368)
.|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|++||+||+++.....++ ..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 4899999999999999999999999999999999877899999999999999999999999999998763211010 011
Q ss_pred CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcccc
Q 017647 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (368)
Q Consensus 156 ~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~ 235 (368)
.+..++.|+|+.|||+.. +++ +... ....++.|+++.+.|+|+|+|+|+++++.+.+...|+.|+|+|...
T Consensus 82 ~~~~d~~d~f~~~fg~~~--~~~----~~~~---~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~ 152 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAG--FGG----GRGR---RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEP 152 (371)
T ss_pred ccCCChHHHHHHhhCCCC--cCC----CCCc---ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCC
Confidence 112345678888887421 110 0000 1134689999999999999999999999999999999999999877
Q ss_pred Cce-eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647 236 GSK-MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (368)
Q Consensus 236 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (368)
... ..+|+.|+|+|.+....++.+|++++..+|+.|+|.|..+...|..|.|.+++.+.++++|.||+|+++|++|+|+
T Consensus 153 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 232 (371)
T PRK14292 153 GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA 232 (371)
T ss_pred CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence 654 7899999999999888888889998889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 315 g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|++.+.+ . |||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 233 G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~ 284 (371)
T PRK14292 233 GMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVP 284 (371)
T ss_pred cCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEE
Confidence 999997643 3 999999999999999999999999999999999999999884
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-56 Score=420.87 Aligned_cols=268 Identities=44% Similarity=0.758 Sum_probs=237.5
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS 155 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~ 155 (368)
...||+||||+++||++|||||||+||++||||+|+. +.++|++|++||||||||++|++||+||+++++.+.++++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g- 79 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG- 79 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC-
Confidence 4579999999999999999999999999999999964 8999999999999999999999999999999865433221
Q ss_pred CCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCcccc
Q 017647 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (368)
Q Consensus 156 ~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~ 235 (368)
. +. |++||+ +|+.++ + .+.++.|+.+.+.|+|+|+|.|.+.++.++++.+|+.|.|.|...
T Consensus 80 ~-----~~-f~~~F~--~g~~~~--------~---~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgks 140 (337)
T KOG0712|consen 80 F-----GG-FSQFFG--FGGNGG--------R---GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKS 140 (337)
T ss_pred C-----cc-HHHhcc--CCCcCc--------c---ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCC
Confidence 1 11 788887 222111 1 122399999999999999999999999999999999999999887
Q ss_pred CceeeeCCCCCCccEEEEeeeCCCcceeee-eeCCCCCCccEE--EceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEE
Q 017647 236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEV--ISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 236 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~--~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~ 312 (368)
+... .|+.|.|+|..+...++++|+.++. ..|..|+|.|.+ ..+.|+.|.|.+++.+.+.++|.|++|+.+++.|.
T Consensus 141 g~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~ 219 (337)
T KOG0712|consen 141 GSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKIT 219 (337)
T ss_pred CCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceee
Confidence 6554 8999999999999999999987765 789999999998 46899999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEe
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V 367 (368)
+.|++++.+ +..+||++|.|..+.|+.|.|+++||++..+|+|.|||+|+...+
T Consensus 220 f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~ 273 (337)
T KOG0712|consen 220 FKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVW 273 (337)
T ss_pred eeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEE
Confidence 999999876 456999999999999999999999999999999999999988765
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-44 Score=340.83 Aligned_cols=211 Identities=43% Similarity=0.754 Sum_probs=168.9
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccC----
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG---- 151 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~---- 151 (368)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||++++..+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 4799999999999999999999999999999999987889999999999999999999999999999875432110
Q ss_pred --CCCCCCc----CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeec
Q 017647 152 --GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETC 225 (368)
Q Consensus 152 --~~~~~~~----~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C 225 (368)
++.+.+. .++.|+|+.|||+. +++++++ ..+... .....++.|+++.+.|+|+|++.|+++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~~-~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~----- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGSV-GRRARKGRDLEAELPLTLEEAYRGGEKVVEVA----- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-cccccc-cCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-----
Confidence 0111121 12336788888631 1111110 001100 11235688999999999999999999887541
Q ss_pred ccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCC
Q 017647 226 EVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305 (368)
Q Consensus 226 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~ 305 (368)
.+.++|+||+|+
T Consensus 155 --------------------------------------------------------------------g~~~~V~Ip~G~ 166 (291)
T PRK14299 155 --------------------------------------------------------------------GERLSVRIPPGV 166 (291)
T ss_pred --------------------------------------------------------------------CEEEEEecCCCc
Confidence 246789999999
Q ss_pred cCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 306 ~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
++|++|+|+|+|++. |||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 167 ~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~ 223 (291)
T PRK14299 167 REGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVM 223 (291)
T ss_pred CCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEE
Confidence 999999999999962 999999999999999999999999999999999999999884
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.4e-43 Score=339.42 Aligned_cols=222 Identities=33% Similarity=0.614 Sum_probs=175.7
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccccc----CcccccC-
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA----GVKSTVG- 151 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~----g~~~~~~- 151 (368)
.|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||+||.. ++.....
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~ 83 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQH 83 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccccc
Confidence 69999999999999999999999999999999998788999999999999999999999999999854 2221101
Q ss_pred CCCCCCc-CCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647 152 GGSSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (368)
Q Consensus 152 ~~~~~~~-~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G 230 (368)
++...+. .++.++|+.|||.. + +. .. .....++.|+.+++.|+|+|++.|+.+++.+.+. .|
T Consensus 84 ~~~~~~~~~~~~~~f~~~~g~~-~---~~-----~~--~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~----~~-- 146 (306)
T PRK10266 84 GDGQSFNAEDFDDIFSSIFGQH-A---RQ-----SR--QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLP----VY-- 146 (306)
T ss_pred CCCCCCCCCCHHHHHHHHhCCC-C---CC-----CC--CCCCCCCCceEEEEEEEHHHhcCCceEEEEEecc----cc--
Confidence 0111122 23346677777631 1 00 01 1123468899999999999999999999887542 12
Q ss_pred CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (368)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~ 310 (368)
.|.|.+.. ...++++|.||+|+++|++
T Consensus 147 ---------------~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~~ 173 (306)
T PRK10266 147 ---------------NAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQR 173 (306)
T ss_pred ---------------cCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCcE
Confidence 22222110 1135799999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|+|+|++..++..+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|+++.|+
T Consensus 174 i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~ 231 (306)
T PRK10266 174 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVP 231 (306)
T ss_pred EEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEee
Confidence 9999999997767778999999999999999999999999999999999999999874
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=327.33 Aligned_cols=245 Identities=44% Similarity=0.838 Sum_probs=218.0
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCCCC
Q 017647 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY 157 (368)
Q Consensus 78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~~~ 157 (368)
|||+||||+++|+..|||+||++|||+||||.|.++++.++|++|.+|||+|+|+++|++||+++..+ ...+
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--------~~~~ 115 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--------HGEF 115 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--------cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 1122
Q ss_pred cCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCc
Q 017647 158 TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS 237 (368)
Q Consensus 158 ~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 237 (368)
..+|+++|..+|++. + .....+.++++++.+.|+++..|.++.+.+.....|..|.|.|...+.
T Consensus 116 ~g~~~~~~~~~~~~~------~----------~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~ 179 (288)
T KOG0715|consen 116 GGNPFDVFLEFFGGK------M----------NKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGA 179 (288)
T ss_pred cCCccchHHHhhccc------c----------cccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccc
Confidence 347899999988751 1 112345678889999999999999999999999999999999999999
Q ss_pred eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCC
Q 017647 238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317 (368)
Q Consensus 238 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G 317 (368)
....|..|.|+|.+......++.++ +|..|.|.|.+..+.|..|.|.+.+...+.+.|.||+|+.++.+|++.+.|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~ 255 (288)
T KOG0715|consen 180 KRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHG 255 (288)
T ss_pred ccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCC
Confidence 9999999999997665444444333 899999999999999999999998888999999999999999999999987
Q ss_pred CCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhh
Q 017647 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 358 (368)
Q Consensus 318 ~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~e 358 (368)
.. ||+|+|.|.+++.|+|+|.|++++..|++.+
T Consensus 256 ~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 256 ND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred cc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 63 9999999999999999999999999998764
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=296.01 Aligned_cols=260 Identities=37% Similarity=0.538 Sum_probs=192.7
Q ss_pred cccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccc
Q 017647 71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST 149 (368)
Q Consensus 71 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~ 149 (368)
..+...+|||+||||+++|+..|||+||||||++||||+|++ +.|.+.|++|+.||+|||||++|+.||+||+++++..
T Consensus 10 ~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 10 EAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred hhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 355667899999999999999999999999999999999995 8999999999999999999999999999999998853
Q ss_pred cCCCCCCCcCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeeccccc
Q 017647 150 VGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT 229 (368)
Q Consensus 150 ~~~~~~~~~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~ 229 (368)
...+.++ ....++|..||+..+..+++.. ......+|.++...+..++++.|.+...+....+.+.|.. .
T Consensus 90 ~~~~~~g--~~~~~~f~~~f~dfg~~~~g~~-------~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~ 159 (336)
T KOG0713|consen 90 NKDGEGG--GGGNDIFSAFFGDFGVTVGGNP-------LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-P 159 (336)
T ss_pred ccccccC--CcccchHHHhhcccccccCCCc-------ccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-C
Confidence 2111111 0114667777664322221111 1112568899999999999999998765554444333321 1
Q ss_pred CCccccCceeeeCCCCCCccEEEEeeeCCCccee--eeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcC
Q 017647 230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS--QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (368)
Q Consensus 230 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~--~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~ 307 (368)
|+ . .|+-+ ..+..++...|.++ |...|.+|.. .+.+.++..+++.+..|...
T Consensus 160 g~--------~---~~~~~-~~~~~~~~~~g~~~~~q~~~~~~~~~--------------~k~~~e~~~~~~~~~~~~~~ 213 (336)
T KOG0713|consen 160 GT--------R---KCNCR-LEMFTQQEGPGRFQMLQEAVCDECPN--------------VKLVLEEDPLEVEFERGDAD 213 (336)
T ss_pred cc--------c---ccCCh-hhheeeccCCChhhhhhhhhhccCCc--------------cceeecCCceeeeeeecccC
Confidence 11 0 12211 12233344444433 2345555555 55566778899999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEe
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V 367 (368)
+....+..+|.+.. -+.+||+++.+...+|+.|.|+++|+++++.|++.++|.|+.+.+
T Consensus 214 ~~~~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~ 272 (336)
T KOG0713|consen 214 GPEEIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEI 272 (336)
T ss_pred CceeeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHh
Confidence 99999999999876 467999999999999999999999999999999999999987643
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.97 E-value=5.3e-30 Score=260.11 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=95.8
Q ss_pred CcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (368)
Q Consensus 195 g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (368)
.-+|++.|.|+|+++|+|+++++.+.+.+.| |.|.
T Consensus 656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G~----------------------------------------- 690 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNTE----------------------------------------- 690 (871)
T ss_pred ccceEEecccCHHHHhCCCeEEEEEEEeecc----CCCc-----------------------------------------
Confidence 4467889999999999999999998765543 1111
Q ss_pred cEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEecc
Q 017647 275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 354 (368)
Q Consensus 275 G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I 354 (368)
..+.+.++++|+||+|+++|++|+|+|+|+..+ ++ .|||||+|.+++|+.|+|+|+|||+++.|
T Consensus 691 --------------ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~I 754 (871)
T TIGR03835 691 --------------STTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALV 754 (871)
T ss_pred --------------ceeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEec
Confidence 112335789999999999999999999999864 33 49999999999999999999999999999
Q ss_pred CHhhhccCCeEEeC
Q 017647 355 SYLDAIMGTVVKVT 368 (368)
Q Consensus 355 sl~eALlG~~v~V~ 368 (368)
+|.+||+|+++.|+
T Consensus 755 SL~EALLGgtIeIp 768 (871)
T TIGR03835 755 DPLVAYNGGIIDVF 768 (871)
T ss_pred CHHHHhcCCEEEee
Confidence 99999999999885
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.1e-20 Score=176.04 Aligned_cols=234 Identities=35% Similarity=0.503 Sum_probs=159.1
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccchhhhhhhccccccCcccccC-
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG- 151 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~- 151 (368)
+..|||++|+|.++|+.+||++||+++|++||||+++.. .+.++|++|.+||++|+|+.+|..||+||+++++....
T Consensus 1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 357999999999999999999999999999999998766 56668999999999999999999999999977664211
Q ss_pred -C--CCC---CCcCCCccccccccCCCCCCC------------------CC---CCCCCCC-Cc-------cCcccccCc
Q 017647 152 -G--GSS---AYTTNPFDLFETFFGPSMGGF------------------PG---MNQTGFR-TR-------RRSTVTKGE 196 (368)
Q Consensus 152 -~--~~~---~~~~~~~d~F~~fFg~~~g~~------------------~g---~~~~~~~-~~-------~~~~~~~g~ 196 (368)
. ..+ ....++.++|.+|||...... .. ....... .+ .........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSP 160 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCC
Confidence 0 011 123455667777777221100 00 0000000 00 000001111
Q ss_pred ceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccE
Q 017647 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 276 (368)
Q Consensus 197 di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~ 276 (368)
.+...+.+++++.+.+..+...+.+... ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~--------------------------- 192 (306)
T KOG0714|consen 161 PVEHPLRVSLEDLYKGESKKMKISRQSF---------------------TSNG--------------------------- 192 (306)
T ss_pred CccCCcceeHHHhccccceeeecccccc---------------------cCCc---------------------------
Confidence 1233333366666666655554432111 0000
Q ss_pred EEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE--ecc
Q 017647 277 VISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISI 354 (368)
Q Consensus 277 ~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~--~~I 354 (368)
.........+.+.+.+++..|+.+....+|+..+. ..+-++++.+..++|..|.+.+.+|... ..|
T Consensus 193 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (306)
T KOG0714|consen 193 -----------REGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI 260 (306)
T ss_pred -----------ccccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceeccccee
Confidence 00112346678999999999999999999987653 5678889999999999999999999999 999
Q ss_pred CHhhhccCCeEEeC
Q 017647 355 SYLDAIMGTVVKVT 368 (368)
Q Consensus 355 sl~eALlG~~v~V~ 368 (368)
++.+|++|....|+
T Consensus 261 s~~~~~~~~~~~~~ 274 (306)
T KOG0714|consen 261 SLKEALLGVTVFVP 274 (306)
T ss_pred ehhhhhcCcceeee
Confidence 99999999987763
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.9e-20 Score=168.15 Aligned_cols=73 Identities=59% Similarity=0.957 Sum_probs=69.3
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~ 148 (368)
..|+|+||||+++|+.++||||||+||++||||++++ +++.++|++||+||+||+||.+|..||+||+.+++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 5689999999999999999999999999999999986 889999999999999999999999999999887664
No 38
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5e-18 Score=153.92 Aligned_cols=69 Identities=59% Similarity=0.862 Sum_probs=63.9
Q ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 142 (368)
.+..|||+||||+++|+.+|||+|||++|++||||+++... +.++|+.|++||++|+|+.+|+.||+++
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 35679999999999999999999999999999999998543 8899999999999999999999999973
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.2e-19 Score=172.13 Aligned_cols=73 Identities=53% Similarity=0.901 Sum_probs=68.3
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~ 147 (368)
.+.|||.+|+|+++||.+|||+|||++++.||||+..+ +.|++.|+.|.+|||||+||.+|++||.||++|++
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 35699999999999999999999999999999999864 35889999999999999999999999999999988
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.75 E-value=7.2e-19 Score=183.16 Aligned_cols=77 Identities=36% Similarity=0.587 Sum_probs=70.9
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~ 148 (368)
.+....+||+||||+++|+.+|||+|||+||++||||+++...+.++|++|++||+||+||.+|+.||+||..+++.
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 34456899999999999999999999999999999999987778899999999999999999999999999887653
No 41
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.73 E-value=2.9e-18 Score=126.31 Aligned_cols=62 Identities=53% Similarity=0.879 Sum_probs=59.0
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhccchhhhhhhc
Q 017647 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYD 139 (368)
Q Consensus 78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~--~~~~f~~i~~Ay~~L~d~~~r~~yd 139 (368)
|||+||||+++++.+|||++|+++++++|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6999999999999999999999999999999987644 8899999999999999999999998
No 42
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.9e-18 Score=158.56 Aligned_cols=88 Identities=49% Similarity=0.762 Sum_probs=76.7
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~ 154 (368)
..|||++|||+.+|+.+||++|||+.|++||||+|++ |.|.++|+.+.+||+||+|+.+|+.||+++..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 6799999999999999999999999999999999984 7899999999999999999999999999987664322
Q ss_pred CCCcCCCccccccccC
Q 017647 155 SAYTTNPFDLFETFFG 170 (368)
Q Consensus 155 ~~~~~~~~d~F~~fFg 170 (368)
-..+++++|...|+
T Consensus 79 --~~~d~~~~~r~~f~ 92 (296)
T KOG0691|consen 79 --GREDQADGFRKKFG 92 (296)
T ss_pred --hhhhHHHHHHHHhh
Confidence 12356677777666
No 43
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.9e-17 Score=157.09 Aligned_cols=120 Identities=29% Similarity=0.632 Sum_probs=99.7
Q ss_pred ceeecccccCCccccCce-------eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE--
Q 017647 221 HLETCEVCTGTGAKMGSK-------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI-- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~-------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v-- 291 (368)
..++|+.|+|+|.....+ ..+|+.|+|+|+++. .+|+.|+|.|.+.+..-.+++.+..+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~ 225 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD 225 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence 678999999999753333 678999999999875 78999999999877666655544333
Q ss_pred -------------------------------------------------------------EEeeEEEEEeCCCCcCCCE
Q 017647 292 -------------------------------------------------------------RLKKNIKVKVPPGVSTGSI 310 (368)
Q Consensus 292 -------------------------------------------------------------~~~~~l~V~Ip~G~~~G~~ 310 (368)
+....++|+||+|+++|++
T Consensus 226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~ 305 (371)
T COG0484 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV 305 (371)
T ss_pred CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence 3445599999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
++|+|+|++..++...|||||+|.|..|..+..++..|+.++
T Consensus 306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~ 347 (371)
T COG0484 306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEF 347 (371)
T ss_pred EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 999999999887777899999999999999998887776543
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-17 Score=161.03 Aligned_cols=74 Identities=50% Similarity=0.728 Sum_probs=66.9
Q ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~ 147 (368)
.+.+.||+||||.++|+..|||++||+||++||||+|++ .++.++|+.|+.||+|||||+.|+-||..-++-|.
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 356789999999999999999999999999999999886 57899999999999999999999999987665443
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.67 E-value=5.9e-17 Score=138.39 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=70.3
Q ss_pred cccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCC
Q 017647 77 GDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (368)
Q Consensus 77 ~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~ 154 (368)
..+|+||||+++| |.+|||+|||++|+++|||++ +..++|++|++||++|+|+.+|..||.+|.+......
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~---- 77 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE---- 77 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCccccccc----
Confidence 4689999999999 999999999999999999997 4568999999999999999999999999976543211
Q ss_pred CCCcCCCccccccccCC
Q 017647 155 SAYTTNPFDLFETFFGP 171 (368)
Q Consensus 155 ~~~~~~~~d~F~~fFg~ 171 (368)
..|.++|...||+
T Consensus 78 ----~~~~~~f~~~fg~ 90 (153)
T PHA03102 78 ----DVPSGYVGATFGD 90 (153)
T ss_pred ----ccHHHHhhhhcCC
Confidence 1266667666653
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.4e-17 Score=144.29 Aligned_cols=70 Identities=50% Similarity=0.815 Sum_probs=64.3
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhccchhhhhhhcccccc
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 144 (368)
+..|+|+||||.++|+..+|++||++|++++|||++++ ..+.++|+.|+.||+||+|.++|++||+.|.-
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 34599999999999999999999999999999999963 46889999999999999999999999998743
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.64 E-value=3.3e-16 Score=147.02 Aligned_cols=73 Identities=48% Similarity=0.747 Sum_probs=66.3
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~ 148 (368)
..+|||+||||.++|+..||-||||++|.+||||...++ .++++|..|..|-|||+||++|..||. |++.++.
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 457999999999999999999999999999999988753 488999999999999999999999998 7776664
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.64 E-value=2.8e-16 Score=114.04 Aligned_cols=58 Identities=66% Similarity=0.950 Sum_probs=53.7
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHhhccchhh
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK 134 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~--~~~~~~~f~~i~~Ay~~L~d~~~ 134 (368)
.|||+||||+++++.++||+||+++++++|||++. .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999987 46788999999999999999853
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.8e-16 Score=138.65 Aligned_cols=70 Identities=43% Similarity=0.713 Sum_probs=65.3
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g 145 (368)
..||||||||+++|+++|||+|||+|.+++|||+++. .+.++.|.+|++||+.|+|+..|..|.+||+..
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 4599999999999999999999999999999999987 677788999999999999999999999999754
No 50
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.62 E-value=7e-16 Score=109.84 Aligned_cols=54 Identities=70% Similarity=1.073 Sum_probs=51.3
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccc
Q 017647 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSD 131 (368)
Q Consensus 78 d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d 131 (368)
|||++|||+++++.++||++|++|++++|||++.. +.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999876 6788999999999999986
No 51
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.8e-15 Score=147.45 Aligned_cols=119 Identities=29% Similarity=0.539 Sum_probs=92.1
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|.|+++. ..|+.|+|.|.+....-..+..+..+
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 235 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGV 235 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCC
Confidence 35789999999965322 2568999999998865 67999999997665433222211111
Q ss_pred ---------------------------------------------------------------E-EeeEEEEEeCCCCcC
Q 017647 292 ---------------------------------------------------------------R-LKKNIKVKVPPGVST 307 (368)
Q Consensus 292 ---------------------------------------------------------------~-~~~~l~V~Ip~G~~~ 307 (368)
. ..+.++|+||+|+++
T Consensus 236 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~ 315 (369)
T PRK14282 236 EDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP 315 (369)
T ss_pred CCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC
Confidence 1 234689999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
|++|+|+|+|++...++.+|||||+|+|+.|+.|++++.+|+.+
T Consensus 316 g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 316 ETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999865455689999999999999999999988654
No 52
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=3.8e-15 Score=146.30 Aligned_cols=120 Identities=29% Similarity=0.582 Sum_probs=94.8
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|.|+++. ..|+.|+|.|.+....-..+..+.++
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 231 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA 231 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence 45789999999964322 1468999999998865 68999999998766533333221111
Q ss_pred -------------------------------------------------------------EEeeEEEEEeCCCCcCCCE
Q 017647 292 -------------------------------------------------------------RLKKNIKVKVPPGVSTGSI 310 (368)
Q Consensus 292 -------------------------------------------------------------~~~~~l~V~Ip~G~~~G~~ 310 (368)
...+.++|+||+|+++|++
T Consensus 232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~ 311 (365)
T PRK14290 232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV 311 (365)
T ss_pred CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence 2345689999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
|+|+|+|++.+.+..+|||||+|+|..|+.|++++.+|+.++
T Consensus 312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999765556899999999999999999999987664
No 53
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=5.3e-15 Score=145.68 Aligned_cols=120 Identities=30% Similarity=0.548 Sum_probs=93.1
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+....-..+..+.++
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~ 224 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGA 224 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCC
Confidence 34679999999965321 2578999999998765 67999999998765433333221111
Q ss_pred ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
+.++.++|+||+|+++|
T Consensus 225 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g 304 (377)
T PRK14298 225 DSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTH 304 (377)
T ss_pred CCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccC
Confidence 22345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
++++|+|+|++...+...|||||+|+|..|+.|++++.+|+.++
T Consensus 305 ~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 305 SVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999765556899999999999999999998887654
No 54
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=6.7e-15 Score=144.62 Aligned_cols=121 Identities=27% Similarity=0.537 Sum_probs=93.2
Q ss_pred ceeecccccCCccccCc-----eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+.+..-..+..+.++
T Consensus 160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGS 227 (366)
T ss_pred CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence 35689999999965321 2578999999998865 67999999998765433222211111
Q ss_pred -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647 292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (368)
+.++.++|+||+|+++|++|+
T Consensus 228 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ir 307 (366)
T PRK14294 228 RLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFR 307 (366)
T ss_pred EEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEE
Confidence 223457999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEec
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS 353 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 353 (368)
|+|+|++...+..+|||||+|+|..|+.|++++.+|+.++.
T Consensus 308 i~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 308 FKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999997655568999999999999999999988876543
No 55
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.1e-14 Score=143.47 Aligned_cols=120 Identities=30% Similarity=0.614 Sum_probs=93.5
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+.......+....++
T Consensus 158 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 225 (371)
T PRK10767 158 SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGD 225 (371)
T ss_pred CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCc
Confidence 3468999999996431 13568999999998765 67999999998765433333221111
Q ss_pred -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647 292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (368)
..++.++|+||+|+++|++++
T Consensus 226 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~ 305 (371)
T PRK10767 226 RIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFR 305 (371)
T ss_pred EEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEE
Confidence 223468999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
|+|+|++...++..|||||+|+|..|+.|++++.+|+.++
T Consensus 306 i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 306 LRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred ECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999765566899999999999999999998887654
No 56
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.2e-14 Score=143.02 Aligned_cols=120 Identities=26% Similarity=0.496 Sum_probs=91.8
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|+|.|+++. ..|+.|+|.|.+.+..-..+.....+
T Consensus 160 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (373)
T PRK14301 160 SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTGS 227 (373)
T ss_pred CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence 4568999999996532 12678999999999875 67999999998765432222211111
Q ss_pred -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647 292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (368)
+.++.++|+||+|+++|++++
T Consensus 228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~r 307 (373)
T PRK14301 228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFR 307 (373)
T ss_pred EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEE
Confidence 233458999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
|+|+|++...+..+|||||+|+|..|+.++.++.+|+.++
T Consensus 308 i~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l 347 (373)
T PRK14301 308 LRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREF 347 (373)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999765556899999999999998888877665543
No 57
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.4e-15 Score=145.11 Aligned_cols=120 Identities=23% Similarity=0.483 Sum_probs=92.2
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|+|.|.++. ..|..|+|.|.+.+..-..+..+..+
T Consensus 162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 229 (365)
T PRK14285 162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQ 229 (365)
T ss_pred CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCC
Confidence 3568999999996432 23678999999998865 68999999998765433332211111
Q ss_pred -----------------------------------------------------------E-EeeEEEEEeCCCCcCCCEE
Q 017647 292 -----------------------------------------------------------R-LKKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 292 -----------------------------------------------------------~-~~~~l~V~Ip~G~~~G~~i 311 (368)
+ ..+.++|.||+|+++|++|
T Consensus 230 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~i 309 (365)
T PRK14285 230 QIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQI 309 (365)
T ss_pred EEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEE
Confidence 2 2347999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
+|+|+|++.+.+...|||||+|+|+.|+.|++++..|+.++
T Consensus 310 rl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l 350 (365)
T PRK14285 310 IIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350 (365)
T ss_pred EECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999765555799999999999999999987766543
No 58
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.4e-14 Score=143.49 Aligned_cols=120 Identities=27% Similarity=0.608 Sum_probs=92.6
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|+|.|+++. ..|+.|+|.|.+.+..-..+..+.++
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 241 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGM 241 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCC
Confidence 3578999999996432 12568999999998765 67999999998765433333222211
Q ss_pred -----------------------------------------------------------EEe--eEEEEEeCCCCcCCCE
Q 017647 292 -----------------------------------------------------------RLK--KNIKVKVPPGVSTGSI 310 (368)
Q Consensus 292 -----------------------------------------------------------~~~--~~l~V~Ip~G~~~G~~ 310 (368)
+.. +.++|+||+|+++|++
T Consensus 242 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~ 321 (391)
T PRK14284 242 RLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTI 321 (391)
T ss_pred EEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeE
Confidence 222 6789999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
++|+|+|++...+..+|||||+|+|..|+.++.++.+|+.++
T Consensus 322 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 322 LKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred EEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999765556899999999999999988877765543
No 59
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=2.8e-14 Score=140.63 Aligned_cols=119 Identities=27% Similarity=0.551 Sum_probs=90.7
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+..-..+..+..+
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 222 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGV 222 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCC
Confidence 45689999999964321 2568999999999875 67999999998765433322211111
Q ss_pred ---------------------------------------------------------------EE-eeEEEEEeCCCCcC
Q 017647 292 ---------------------------------------------------------------RL-KKNIKVKVPPGVST 307 (368)
Q Consensus 292 ---------------------------------------------------------------~~-~~~l~V~Ip~G~~~ 307 (368)
+. .+.++|+||+|+++
T Consensus 223 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~ 302 (378)
T PRK14278 223 GDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP 302 (378)
T ss_pred CCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC
Confidence 22 56789999999999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
|++++|+|+|++...+...|||||+|+|..|..+..++..|+..
T Consensus 303 g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 346 (378)
T PRK14278 303 GSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRE 346 (378)
T ss_pred CcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 99999999999976555689999999999998888777665544
No 60
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.7e-14 Score=141.91 Aligned_cols=119 Identities=23% Similarity=0.506 Sum_probs=90.9
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|.+....-.++..+.++
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 228 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGT 228 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCc
Confidence 3578999999997532 12568999999999875 68999999999765433222211110
Q ss_pred -----------------------------------------------------------EEe-eEEEEEeCCCCcCCCEE
Q 017647 292 -----------------------------------------------------------RLK-KNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 292 -----------------------------------------------------------~~~-~~l~V~Ip~G~~~G~~i 311 (368)
... +.++|+||+|+++|++|
T Consensus 229 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~i 308 (372)
T PRK14300 229 RIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQL 308 (372)
T ss_pred EEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEE
Confidence 222 57999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
+|+|+|++.+.+..+|||||+|+|+.|..|+.++..|+..
T Consensus 309 ri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~ 348 (372)
T PRK14300 309 RLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEE 348 (372)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999876556789999999999999888777665544
No 61
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.9e-14 Score=140.12 Aligned_cols=119 Identities=24% Similarity=0.481 Sum_probs=90.5
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|.|+|+++. ..|+.|+|.|.+....-..+..+.++
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 4578999999996422 12468999999999865 67999999998766533333222111
Q ss_pred ----------------------------------------------------------EE-eeEEEEEeCCCCcCCCEEE
Q 017647 292 ----------------------------------------------------------RL-KKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 292 ----------------------------------------------------------~~-~~~l~V~Ip~G~~~G~~i~ 312 (368)
+. ...++|+||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 22 3368999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
|+|+|++.+.+...|||||+|+|+.|+.++.++..++.+
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~ 341 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEK 341 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999976544579999999999999988777655443
No 62
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2e-14 Score=141.37 Aligned_cols=120 Identities=28% Similarity=0.573 Sum_probs=92.0
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|.|+|+++. ..|..|+|.|.+.......+....++
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 221 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGI 221 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcC
Confidence 45689999999965321 2568999999999865 67999999998765433333222111
Q ss_pred ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
..++.++|+||+|+++|
T Consensus 222 ~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g 301 (371)
T PRK14287 222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTG 301 (371)
T ss_pred CCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCC
Confidence 23345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
++|+|+|+|++...+...|||||+|+|..|+.+++++..|+.++
T Consensus 302 ~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 302 TSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred cEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999999765556899999999999999998887665543
No 63
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.6e-14 Score=141.09 Aligned_cols=119 Identities=23% Similarity=0.493 Sum_probs=90.1
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+.....+....++
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~ 229 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGV 229 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCc
Confidence 34689999999965321 2568999999998875 67999999998765433333222211
Q ss_pred ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
..++.++|+||+|+++|
T Consensus 230 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g 309 (380)
T PRK14276 230 ETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTG 309 (380)
T ss_pred cCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCC
Confidence 23345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++++|+|+|++...+..+|||||+|+|..|..+..++..++.+
T Consensus 310 ~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 352 (380)
T PRK14276 310 KKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKA 352 (380)
T ss_pred CEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999976555689999999999998887766555443
No 64
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3e-14 Score=141.28 Aligned_cols=119 Identities=31% Similarity=0.625 Sum_probs=90.7
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+....-..+..+..+
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 245 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV 245 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence 45789999999965322 2568999999999875 67999999998765433333211111
Q ss_pred ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
+.++.++|+||+|+++|
T Consensus 246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G 325 (397)
T PRK14281 246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE 325 (397)
T ss_pred CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence 23355899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++++|+|+|++...++..|||||+|+|..|..++.++..|+.+
T Consensus 326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 368 (397)
T PRK14281 326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKE 368 (397)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 9999999999976555689999999999999887776655444
No 65
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.5e-14 Score=139.67 Aligned_cols=119 Identities=30% Similarity=0.535 Sum_probs=89.9
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec---------
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS--------- 286 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~--------- 286 (368)
....|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+.+..-..+.
T Consensus 166 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 233 (372)
T PRK14286 166 SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGS 233 (372)
T ss_pred CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCC
Confidence 3468999999996422 13568999999999875 679999999987654222221
Q ss_pred -----cceE----------E---------------------------------------E-EeeEEEEEeCCCCcCCCEE
Q 017647 287 -----GEGR----------I---------------------------------------R-LKKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 287 -----g~g~----------v---------------------------------------~-~~~~l~V~Ip~G~~~G~~i 311 (368)
|+|. + + +.+.++|+||+|+++|+++
T Consensus 234 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ 313 (372)
T PRK14286 234 RLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVF 313 (372)
T ss_pred EEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEE
Confidence 1110 0 1 2346899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
+|+|+|++...+...|||||+|+|..|+.++.++.+|+.+
T Consensus 314 ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~ 353 (372)
T PRK14286 314 RLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEE 353 (372)
T ss_pred EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999976555689999999999999888877766543
No 66
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.50 E-value=3.3e-14 Score=139.30 Aligned_cols=116 Identities=32% Similarity=0.724 Sum_probs=88.6
Q ss_pred eeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec------
Q 017647 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS------ 286 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~------ 286 (368)
...|..|+|+|..... ...+|+.|.|+|++++ ..|+.|+|.|.+.+..-..+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 227 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD 227 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence 5789999999964321 2468999999998865 579999999987654222221
Q ss_pred --------cceE----------E---------------------------------------EEeeEEEEEeCCCCcCCC
Q 017647 287 --------GEGR----------I---------------------------------------RLKKNIKVKVPPGVSTGS 309 (368)
Q Consensus 287 --------g~g~----------v---------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (368)
|+|. + ..++.++|.||+|+++|+
T Consensus 228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~ 307 (354)
T TIGR02349 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT 307 (354)
T ss_pred CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence 1110 0 123468999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceE
Q 017647 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (368)
Q Consensus 310 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~ 349 (368)
+++|+|+|++...+..+|||||+|+|..|+.+++++.+++
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999999765557899999999999999988887654
No 67
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.7e-14 Score=140.36 Aligned_cols=118 Identities=27% Similarity=0.532 Sum_probs=89.6
Q ss_pred ceeecccccCCccccCc-----eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+.+..-..+..+..+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 256 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ 256 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence 45789999999975322 2578999999999876 68999999998765432222211110
Q ss_pred -----------------------------------------------------------EEeeEEEEEeCCCCcCCCEEE
Q 017647 292 -----------------------------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (368)
Q Consensus 292 -----------------------------------------------------------~~~~~l~V~Ip~G~~~G~~i~ 312 (368)
...+.++|+||+|+++|++|+
T Consensus 257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir 336 (392)
T PRK14279 257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR 336 (392)
T ss_pred EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence 233558999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 313 l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
|+|+|++.. ++.+|||||+|+|..|+.+..++..|+..
T Consensus 337 i~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~ 374 (392)
T PRK14279 337 VRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALEA 374 (392)
T ss_pred ECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999964 45689999999999998887777665543
No 68
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=7.2e-14 Score=137.73 Aligned_cols=119 Identities=29% Similarity=0.567 Sum_probs=89.3
Q ss_pred ceeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+.+..-..+....++
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~ 226 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGV 226 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCC
Confidence 3568999999996421 12568999999998865 67999999998765433332211111
Q ss_pred ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
..++.++|+||+|+++|
T Consensus 227 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g 306 (376)
T PRK14280 227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTG 306 (376)
T ss_pred cCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCC
Confidence 23345899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++++|+|+|++...+...|||||+|+|..|+.++.++..|+.+
T Consensus 307 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~ 349 (376)
T PRK14280 307 TQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLRE 349 (376)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999976555689999999999998887666555443
No 69
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=8.2e-14 Score=137.81 Aligned_cols=119 Identities=29% Similarity=0.558 Sum_probs=90.0
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|..|+|.|.+.+..-..+....++
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 238 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGI 238 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCc
Confidence 35789999999965321 2468999999999875 67999999998765433333221111
Q ss_pred ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
+.++.++|.||+|+++|
T Consensus 239 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g 318 (386)
T PRK14277 239 DDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTG 318 (386)
T ss_pred cCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCC
Confidence 22344799999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++++|+|+|++...+...|||||+|+|..|..++.++.+++.+
T Consensus 319 ~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~ 361 (386)
T PRK14277 319 TKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLRE 361 (386)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 9999999999876555679999999999998887777665444
No 70
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.47 E-value=7.5e-14 Score=103.33 Aligned_cols=65 Identities=49% Similarity=1.107 Sum_probs=54.9
Q ss_pred cccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEE-ceeeeeeccce
Q 017647 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG 289 (368)
Q Consensus 225 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-~~~C~~C~g~g 289 (368)
|+.|+|+|+..+..+.+|+.|+|+|.++..+++++++++++.+|+.|+|+|+++ .++|..|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999999999999999999999998888888999999999999999999 99999999975
No 71
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=7.3e-14 Score=137.39 Aligned_cols=118 Identities=20% Similarity=0.492 Sum_probs=87.8
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+.+..-..+..+..+
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 232 (372)
T PRK14296 165 DIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGI 232 (372)
T ss_pred CCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCC
Confidence 35689999999975322 2468999999999876 67999999997655422222211111
Q ss_pred ----------------------------------------------------------------EEeeEEEEEeCCCCcC
Q 017647 292 ----------------------------------------------------------------RLKKNIKVKVPPGVST 307 (368)
Q Consensus 292 ----------------------------------------------------------------~~~~~l~V~Ip~G~~~ 307 (368)
+.++.++|+||+|+++
T Consensus 233 ~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~ 312 (372)
T PRK14296 233 RPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINS 312 (372)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCC
Confidence 2334589999999999
Q ss_pred CCEEEEccCCCCCC-CCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647 308 GSILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (368)
Q Consensus 308 G~~i~l~g~G~~~~-~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 350 (368)
|++++|+|+|++.. ..+..|||||+|+|..|+.+..++..|+.
T Consensus 313 g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 356 (372)
T PRK14296 313 NELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIE 356 (372)
T ss_pred CcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 99999999999843 23457999999999999888777666544
No 72
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=8e-14 Score=137.66 Aligned_cols=117 Identities=26% Similarity=0.526 Sum_probs=89.3
Q ss_pred eeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE-
Q 017647 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI- 291 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v- 291 (368)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+.+..-..+..+..+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 568999999996532 13578999999998765 67999999997655433333322111
Q ss_pred --------------------------------------------------------------EEeeEEEEEeCCCCcCCC
Q 017647 292 --------------------------------------------------------------RLKKNIKVKVPPGVSTGS 309 (368)
Q Consensus 292 --------------------------------------------------------------~~~~~l~V~Ip~G~~~G~ 309 (368)
..++.++|+||+|+++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~ 312 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT 312 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence 233558999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (368)
Q Consensus 310 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 350 (368)
+++|+|+|++...+...|||||+|+|..|+.+..++..|+.
T Consensus 313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~ 353 (380)
T PRK14297 313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALT 353 (380)
T ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHH
Confidence 99999999997655568999999999999888777665543
No 73
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=9.8e-14 Score=137.38 Aligned_cols=117 Identities=30% Similarity=0.600 Sum_probs=88.8
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec-----
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS----- 286 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~----- 286 (368)
....|+.|+|+|..... ...+|+.|+|+|.++. ..|+.|+|.|.+....-..+.
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 237 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGV 237 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence 45789999999975422 2568999999998765 679999999987654222222
Q ss_pred ---------cceE----------E---------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 287 ---------GEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 287 ---------g~g~----------v---------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
|.|. . ...+.++|.||+|+++|
T Consensus 238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g 317 (386)
T PRK14289 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG 317 (386)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCC
Confidence 1111 0 22456899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceE
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~ 349 (368)
++++|+|+|.+...++.+|||||+|+|+.|..+..++..|+
T Consensus 318 ~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l 358 (386)
T PRK14289 318 KVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTL 358 (386)
T ss_pred cEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHH
Confidence 99999999999765567899999999999987776665544
No 74
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=1.2e-13 Score=136.62 Aligned_cols=118 Identities=29% Similarity=0.552 Sum_probs=88.9
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|+|+|+++. ..|..|.|.|.+.+..-..+..+..+
T Consensus 182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~ 249 (389)
T PRK14295 182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQ 249 (389)
T ss_pred CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCC
Confidence 3578999999996422 12568999999999876 68999999998765433222211111
Q ss_pred -----------------------------------------------------------EE-eeEEEEEeCCCCcCCCEE
Q 017647 292 -----------------------------------------------------------RL-KKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 292 -----------------------------------------------------------~~-~~~l~V~Ip~G~~~G~~i 311 (368)
+. .+.++|+||+|+++|++|
T Consensus 250 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~i 329 (389)
T PRK14295 250 RIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVL 329 (389)
T ss_pred EEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEE
Confidence 12 247999999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
+|+|+|++.. ++.+|||||+|+|..|+.+..++..|+.+
T Consensus 330 ri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~ 368 (389)
T PRK14295 330 RVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALEA 368 (389)
T ss_pred EECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999964 45689999999999998887766655543
No 75
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.1e-13 Score=136.38 Aligned_cols=120 Identities=25% Similarity=0.528 Sum_probs=90.7
Q ss_pred ceeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec-----
Q 017647 221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS----- 286 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~----- 286 (368)
....|+.|+|+|.... ....+|+.|.|.|+++. ..|..|.|.|.+.+..-..+.
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~ 226 (374)
T PRK14293 159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGV 226 (374)
T ss_pred CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCC
Confidence 3468999999996431 12468999999999865 679999999987553222221
Q ss_pred ---------cceE------------E-------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 287 ---------GEGR------------I-------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 287 ---------g~g~------------v-------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
|.|. + ..++.++|+||+|+++|
T Consensus 227 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g 306 (374)
T PRK14293 227 DTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPN 306 (374)
T ss_pred CCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCC
Confidence 1110 0 22345789999999999
Q ss_pred CEEEEccCCCCCCCC-CCCccEEEEEEEEeCCCcccccCceEEEe
Q 017647 309 SILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 352 (368)
++++|+|+|++...+ +..|||||+|+|..|+.+++++.+|+.++
T Consensus 307 ~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 307 TVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999996543 35799999999999999999998877654
No 76
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.6e-13 Score=135.36 Aligned_cols=119 Identities=24% Similarity=0.530 Sum_probs=89.4
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|..... ...+|+.|+|+|..+. ..|..|+|.|.+....-..+....++
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~ 229 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGV 229 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCC
Confidence 34689999999975321 2568999999998865 67999999998765433333221110
Q ss_pred ---------------------------------------------------------------EEeeEEEEEeCCCCcCC
Q 017647 292 ---------------------------------------------------------------RLKKNIKVKVPPGVSTG 308 (368)
Q Consensus 292 ---------------------------------------------------------------~~~~~l~V~Ip~G~~~G 308 (368)
+.++.++|.||+|+++|
T Consensus 230 ~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g 309 (378)
T PRK14283 230 ETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSG 309 (378)
T ss_pred CCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCC
Confidence 23446899999999999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++++|+|+|++...+...|||||+|+|..|+.++.++..|+.+
T Consensus 310 ~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~ 352 (378)
T PRK14283 310 TTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLRE 352 (378)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 9999999999876555689999999999998877766555443
No 77
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.6e-13 Score=120.58 Aligned_cols=64 Identities=31% Similarity=0.517 Sum_probs=56.7
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.|||++|||++. ++..+|+++||+|++++|||+.... .+.+.|..||+||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999995 7889999999999999999997532 145689999999999999999999984
No 78
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.5e-13 Score=120.07 Aligned_cols=64 Identities=31% Similarity=0.472 Sum_probs=56.2
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~----~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.|||++|||++. ++.++|+++||+|++++|||++.... +...+..||+||++|+||.+|+.|+-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999996 78999999999999999999986421 23457899999999999999999985
No 79
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.44 E-value=2e-13 Score=135.82 Aligned_cols=119 Identities=22% Similarity=0.508 Sum_probs=88.4
Q ss_pred ceeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
....|+.|+|+|.... ....+|+.|+|+|+++... ..|+.|+|.|.+....-..+..+.++
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 234 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGV 234 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCC
Confidence 4578999999996321 1246899999999987522 68999999998866543333322221
Q ss_pred --------------------------------------------------------------E-EeeEEEEEeCCC--Cc
Q 017647 292 --------------------------------------------------------------R-LKKNIKVKVPPG--VS 306 (368)
Q Consensus 292 --------------------------------------------------------------~-~~~~l~V~Ip~G--~~ 306 (368)
. +.+.|+|+||+| ++
T Consensus 235 ~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~ 314 (421)
T PTZ00037 235 PNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK 314 (421)
T ss_pred CCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccC
Confidence 2 234689999999 99
Q ss_pred CCCEEEEccCCCCCCCC-CCCccEEEEEEEEeC--CCcccccCceE
Q 017647 307 TGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDGIDLF 349 (368)
Q Consensus 307 ~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~--~~f~r~g~dL~ 349 (368)
+|++++|+|+|++..++ +..|||||+|+|..| ..++.+...|+
T Consensus 315 pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll 360 (421)
T PTZ00037 315 PGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEIL 360 (421)
T ss_pred CCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHH
Confidence 99999999999996543 457999999999999 77776655443
No 80
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1e-13 Score=133.12 Aligned_cols=89 Identities=43% Similarity=0.717 Sum_probs=72.2
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCC
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG 152 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~ 152 (368)
.-+|||.|||+.++|+..|||+|||++|+.+|||++.. .+++.+|++|-+||.+|+||.+|..||. |.. +.....+
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~~~~ 448 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEVGSG 448 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhhcCC
Confidence 35699999999999999999999999999999999863 5788999999999999999999999997 221 1111111
Q ss_pred CCCCCcCCCccccccc
Q 017647 153 GSSAYTTNPFDLFETF 168 (368)
Q Consensus 153 ~~~~~~~~~~d~F~~f 168 (368)
+-+.+|+++|..|
T Consensus 449 ---~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 449 ---GAGFDPFNIFRAF 461 (486)
T ss_pred ---CcCcChhhhhhhc
Confidence 1245788887766
No 81
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.7e-14 Score=125.60 Aligned_cols=70 Identities=41% Similarity=0.772 Sum_probs=65.8
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 141 (368)
+-+...|.|+||||+++++..||++|||+||+++|||++++++..+.|+.|..||++|.|...|..||-+
T Consensus 28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 4456789999999999999999999999999999999999988899999999999999999999999954
No 82
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-13 Score=133.68 Aligned_cols=67 Identities=42% Similarity=0.606 Sum_probs=64.4
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 142 (368)
..|.|.+|||++++++++|||.||++|...|||+|..+.|+|.|+.|+.||++|+|+.+|..||.--
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999743
No 83
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.6e-13 Score=132.71 Aligned_cols=119 Identities=26% Similarity=0.563 Sum_probs=89.3
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeee--------
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR-------- 283 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~-------- 283 (368)
....|..|+|+|..... ...+|+.|+|.|..+. ..|..|.|.|.+....-.
T Consensus 156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 223 (371)
T PRK14292 156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKAETVKVKLPRGI 223 (371)
T ss_pred CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeecceEEEEECCCC
Confidence 35789999999965422 1468999999998764 689999999987543222
Q ss_pred ------eeccceE--------E---------------------------------------EEeeEEEEEeCCCCcCCCE
Q 017647 284 ------KCSGEGR--------I---------------------------------------RLKKNIKVKVPPGVSTGSI 310 (368)
Q Consensus 284 ------~C~g~g~--------v---------------------------------------~~~~~l~V~Ip~G~~~G~~ 310 (368)
...|.|. + ..++.++|.||+|+++|++
T Consensus 224 ~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ 303 (371)
T PRK14292 224 DEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDL 303 (371)
T ss_pred CCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcE
Confidence 2222221 0 1234457999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++|+|+|++...+..+|||||+|+|+.|+.++.+...|+..
T Consensus 304 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 344 (371)
T PRK14292 304 HRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEA 344 (371)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999976666689999999999999888877665543
No 84
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=5.8e-13 Score=131.62 Aligned_cols=109 Identities=32% Similarity=0.576 Sum_probs=82.1
Q ss_pred ceeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE----
Q 017647 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI---- 291 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v---- 291 (368)
....|+.|+|+|.... ....+|+.|+|+|. ++ ..|..|+|.|.+....-.++..+.++
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 238 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGS 238 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence 4578999999996532 12578999999995 33 67999999998765433333211111
Q ss_pred -----------------------------------------------------------E-EeeEEEEEeCCCCcCCCEE
Q 017647 292 -----------------------------------------------------------R-LKKNIKVKVPPGVSTGSIL 311 (368)
Q Consensus 292 -----------------------------------------------------------~-~~~~l~V~Ip~G~~~G~~i 311 (368)
. ....++|.||+|+++|++|
T Consensus 239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i 318 (382)
T PRK14291 239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI 318 (382)
T ss_pred EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence 1 2346899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEEeCC--Ccc
Q 017647 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIP--GIQ 342 (368)
Q Consensus 312 ~l~g~G~~~~~~~~~GDL~v~i~v~~~~--~f~ 342 (368)
+|+|+|++...+..+|||||+|+|..|. .+.
T Consensus 319 ~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls 351 (382)
T PRK14291 319 RVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLS 351 (382)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcC
Confidence 9999999976555689999999999986 366
No 85
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=7.8e-13 Score=116.06 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=57.9
Q ss_pred ccccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 76 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
..|||++|||++. .+..+|+++||+|++++|||++.... +.+.|..||+||++|+||.+|+.|+-
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5699999999996 67899999999999999999975422 45679999999999999999999995
No 86
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=8.9e-13 Score=116.16 Aligned_cols=65 Identities=31% Similarity=0.434 Sum_probs=56.3
Q ss_pred ccccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cc-----hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKE-PG-----ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 76 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~-~~-----~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
..|||++|||++. ++..+|+++||+|++++|||++.. +. +.+.+..||+||++|+||.+|+.|+-
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3699999999995 689999999999999999999863 22 23446899999999999999999995
No 87
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.35 E-value=9.4e-13 Score=106.96 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=47.7
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~ 130 (368)
.++|+||||+++++.+|||++||+|++++|||+. ++.+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999985 56788999999999985
No 88
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.25 E-value=5.3e-12 Score=118.67 Aligned_cols=57 Identities=46% Similarity=0.609 Sum_probs=51.1
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhccch
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVLSDD 132 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~f~~i~~Ay~~L~d~ 132 (368)
..|+|+||||++++|.+|||+|||+|+++||||++.. +.++++|++|++||++|+..
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3699999999999999999999999999999999642 24789999999999999863
No 89
>PHA02624 large T antigen; Provisional
Probab=99.23 E-value=8.3e-12 Score=126.92 Aligned_cols=60 Identities=32% Similarity=0.538 Sum_probs=56.5
Q ss_pred ccccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhh
Q 017647 76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138 (368)
Q Consensus 76 ~~d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~y 138 (368)
..++|++|||+++| +.+|||+|||++|++||||++ ++.++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 35899999999999 999999999999999999996 4578999999999999999999999
No 90
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.16 E-value=4.2e-11 Score=92.36 Aligned_cols=52 Identities=40% Similarity=0.712 Sum_probs=41.1
Q ss_pred eEEEEEeCCCCcCCCEEEEccCCCCCCCCC-CCccEEEEEEEEeCCCcccccC
Q 017647 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQRDGI 346 (368)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~-~~GDL~v~i~v~~~~~f~r~g~ 346 (368)
+.++|+||+|+++|+.++++|+|++...+. ..|||||+|+|..|..++.++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk 79 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQK 79 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHh
Confidence 478899999999999999999999876555 7999999999999988876543
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.13 E-value=3.5e-11 Score=116.38 Aligned_cols=72 Identities=36% Similarity=0.622 Sum_probs=64.8
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~ 147 (368)
..|||||||++.+++..|||++||+|..++|||+.+. .+-++.+++|++||+.|+|...|+.|-.||.-...
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 4599999999999999999999999999999999754 35678999999999999999999999999875543
No 92
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.01 E-value=5.7e-10 Score=98.00 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=56.1
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.|||++|||++. .+..++++.|++|.+++|||+..... +.+....||+||.+|+||.+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999995 89999999999999999999975432 34567899999999999999999864
No 93
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.95 E-value=1.2e-09 Score=94.78 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhccchhhhhhhccc
Q 017647 88 SASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQY 141 (368)
Q Consensus 88 ~a~~~eIk~ayr~l~~~~hPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 141 (368)
+.+..+|+++||+|++++|||+.... .+.+.|..||+||++|+||.+|+.|+--
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 35789999999999999999986432 2567899999999999999999999963
No 94
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-09 Score=99.75 Aligned_cols=71 Identities=39% Similarity=0.459 Sum_probs=63.3
Q ss_pred cccccccccchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647 71 SVVCASGDYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (368)
Q Consensus 71 ~~~~~~~d~y~iLgv~~---~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 141 (368)
..-|...|+|.+|||+. -|++.+|.+|.++.+.+||||+... .+..+.|+.|+.||+||+|+.+|..||..
T Consensus 37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 35577789999999987 7899999999999999999999742 46789999999999999999999999974
No 95
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=2.4e-09 Score=102.14 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=72.1
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
++|.||.+++.|+|.||+.|.++.+..-
T Consensus 198 R~G~DL~~~~~Isl~eAl~G~~~~v~tl---------------------------------------------------- 225 (291)
T PRK14299 198 LEGDDLYATVDVPAPIAVVGGKVRVMTL---------------------------------------------------- 225 (291)
T ss_pred EECCEEEEEEecCHHHHhCCCEEEEECC----------------------------------------------------
Confidence 4688999999999999999988776521
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++.++|+||+|+++|++++|+|+|++.. ++..|||||+|+|..|+.++.++.+|+..
T Consensus 226 ---------------------dG~~~v~ip~~~~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~ 282 (291)
T PRK14299 226 ---------------------DGPVEVTIPPRTQAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQ 282 (291)
T ss_pred ---------------------CCCEEEEeCCCcCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 2347899999999999999999999853 45689999999999999999988876544
No 96
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.2e-09 Score=93.83 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=58.1
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhc
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYD 139 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd 139 (368)
+.|+|+||.|.|..+.++||+.||+|++..|||+|++ +.|...|.-|..||.+|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5699999999999999999999999999999999985 578899999999999999998665444
No 97
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.5e-09 Score=99.79 Aligned_cols=105 Identities=28% Similarity=0.529 Sum_probs=77.6
Q ss_pred ecccccCCccccCce----------eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccc-----
Q 017647 224 TCEVCTGTGAKMGSK----------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE----- 288 (368)
Q Consensus 224 ~C~~C~G~G~~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~----- 288 (368)
.|..|.|+|...... ..+|..|+|.|..+... ..|+.|.|.+.+...+-.+.+..
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~ 214 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH 214 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence 688899888653322 56799999998864432 68999999887654322222111
Q ss_pred --eE------------------------------------------------------E--EEeeEEEEEeCCC--CcCC
Q 017647 289 --GR------------------------------------------------------I--RLKKNIKVKVPPG--VSTG 308 (368)
Q Consensus 289 --g~------------------------------------------------------v--~~~~~l~V~Ip~G--~~~G 308 (368)
.. + .+.+.+++.++|| +.+|
T Consensus 215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~ 294 (337)
T KOG0712|consen 215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG 294 (337)
T ss_pred cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence 11 1 2346789999999 9999
Q ss_pred CEEEEccCCCCCCCCCCCccEEEEEEEEeCC
Q 017647 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 339 (368)
Q Consensus 309 ~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~ 339 (368)
++++++|+|++..++. .|||||.+.|+.|+
T Consensus 295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 9999999999987655 99999999999988
No 98
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.66 E-value=3.6e-08 Score=94.80 Aligned_cols=83 Identities=30% Similarity=0.452 Sum_probs=68.7
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
+.|.|+.+++.|+|.+|+.|+++.|...
T Consensus 206 r~g~DL~~~~~Isl~~al~G~~~~i~~~---------------------------------------------------- 233 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGAKVTVPTL---------------------------------------------------- 233 (306)
T ss_pred EeCCceEEEEecCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence 4588999999999999999988776521
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 350 (368)
.+.++|+||+|+++|++++|+|+|++.. +..|||||+|+|..|+.+.-+...|+.
T Consensus 234 ---------------------~g~v~v~ip~g~~~g~~~ri~g~G~p~~--~~~GdL~v~~~v~~P~~l~~~q~~l~~ 288 (306)
T PRK10266 234 ---------------------KESILLTIPPGSQAGQRLRVKGKGLVSK--KQTGDLYAVLKIVMPPKPDEKTAALWQ 288 (306)
T ss_pred ---------------------CccEEEEeCCCcCCCCEEEECCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 2347899999999999999999999864 247999999999999988766655443
No 99
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.62 E-value=7.4e-08 Score=77.92 Aligned_cols=61 Identities=36% Similarity=0.730 Sum_probs=49.6
Q ss_pred ceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEE
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL 293 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~ 293 (368)
..+.|..|+|+|. .+|+.|+|+|.+.... .+++++...|+.|+|.|+. .|..|.|.+.+..
T Consensus 40 ~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGA------QVCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCC------cCCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 4578999999997 3899999999987543 2345667899999999985 4999999997654
No 100
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.5e-07 Score=82.80 Aligned_cols=55 Identities=33% Similarity=0.631 Sum_probs=51.3
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHh-hccc
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYE-VLSD 131 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~-~L~d 131 (368)
..+|.+|||..+|+.+|++.||..||+++|||...+....++|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999888888899999999998 7764
No 101
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.23 E-value=2.1e-06 Score=89.18 Aligned_cols=71 Identities=55% Similarity=0.918 Sum_probs=65.9
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~ 147 (368)
.|||+||||+++|+.++||+|||+|+++||||++..+.+.++|++|++||++|+||.+|+.||.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 58999999999999999999999999999999988777888999999999999999999999999977654
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.9e-06 Score=91.17 Aligned_cols=52 Identities=37% Similarity=0.531 Sum_probs=45.4
Q ss_pred cccchhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 017647 77 GDYYATLGVPKS----ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130 (368)
Q Consensus 77 ~d~y~iLgv~~~----a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~ 130 (368)
.+-|+||.|+-+ -..+.||++|++||.+||||+|+ +-.++|.+||+|||.|.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 478999999753 24488999999999999999994 66789999999999998
No 103
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.1e-06 Score=66.23 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=45.1
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccch
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~ 132 (368)
..--.||||+++++.+.||+|+|++....|||+.-. .-.-.+||||+++|...
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS---PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS---PYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC---HHHHHHHHHHHHHHhcc
Confidence 356679999999999999999999999999999743 34456899999999753
No 104
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.04 E-value=4.1e-06 Score=74.10 Aligned_cols=48 Identities=31% Similarity=0.662 Sum_probs=39.3
Q ss_pred eeCCCCCCccEEEc--eeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEc
Q 017647 266 SVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (368)
Q Consensus 266 ~~C~~C~G~G~~~~--~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~ 314 (368)
.+|+.|+|+|+++. +.|..|+|.|.+..+..+.+++ .|+.+|++|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 56777777777765 5788888888888888999999 999999999875
No 105
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.87 E-value=9.6e-06 Score=59.86 Aligned_cols=44 Identities=32% Similarity=0.897 Sum_probs=31.2
Q ss_pred ceeecccccCCccccCc---------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCcc
Q 017647 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 275 (368)
....|+.|+|+|..... ...+|+.|+|+|+++ .. .+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence 45689999999976432 267899999999987 21 7899999986
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.46 E-value=8.2e-05 Score=75.08 Aligned_cols=68 Identities=31% Similarity=0.749 Sum_probs=37.9
Q ss_pred eecccccCCccccCceeeeCCCCCCccEEEEee--------eCCCcceee-eeeCCCCCCccEEEc-eeeeeeccceEE
Q 017647 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD--------QTPFGLFSQ-VSVCPSCGGEGEVIS-EYCRKCSGEGRI 291 (368)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--------~~~~g~~~~-~~~C~~C~G~G~~~~-~~C~~C~g~g~v 291 (368)
..|+.|+|+|.... ....|+.|+|+|..-... +...-.+.. ..+|+.|+|+|.+.. ..|..|.|.|.+
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 45777777775432 235677777777652111 000111222 357777777776643 677777777765
No 107
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00047 Score=58.49 Aligned_cols=67 Identities=24% Similarity=0.433 Sum_probs=53.2
Q ss_pred ccccccchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 74 CASGDYYATLGVPK--SASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 74 ~~~~d~y~iLgv~~--~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
....+||.++|... ...+..++.-|--..++.|||+... ..+.+...+||+||.+|.||-+|+.|=.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34568999998654 4566667768999999999998321 2467889999999999999999999863
No 108
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.78 E-value=0.0013 Score=53.47 Aligned_cols=41 Identities=29% Similarity=0.808 Sum_probs=32.3
Q ss_pred ecccccCCccccCc------eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647 224 TCEVCTGTGAKMGS------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (368)
Q Consensus 224 ~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (368)
.|+.|+|+|..... ...+|+.|+|+|+. .|+.|.|.|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence 89999999975321 25689999999962 4999999998654
No 109
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0014 Score=57.95 Aligned_cols=53 Identities=42% Similarity=0.552 Sum_probs=45.9
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhc
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVL 129 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~f~~i~~Ay~~L 129 (368)
.+.|.+|++...++..+|+++|+++....|||+... ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999998532 23678889999999754
No 110
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.46 E-value=0.0025 Score=56.50 Aligned_cols=31 Identities=29% Similarity=0.758 Sum_probs=19.4
Q ss_pred eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEce
Q 017647 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE 280 (368)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~ 280 (368)
.+|+.|+|+|.+++.. .+|+.|+|+|++...
T Consensus 100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFRPT 130 (186)
T ss_pred CcCCCCCCeeEEecCC----------CCCCCCCCccEEeee
Confidence 4566666666665421 467777777776554
No 111
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.003 Score=64.17 Aligned_cols=45 Identities=33% Similarity=0.920 Sum_probs=36.4
Q ss_pred eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc---------------------eeeeeeccceEEEE
Q 017647 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------------------EYCRKCSGEGRIRL 293 (368)
Q Consensus 239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------------------~~C~~C~g~g~v~~ 293 (368)
+.+|+.|+|+|++.... ..|+.|+|+|+... -.|..|+|.|.++.
T Consensus 2 ~~~C~~C~g~G~i~v~~----------e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v 67 (715)
T COG1107 2 IKKCPECGGKGKIVVGE----------EECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV 67 (715)
T ss_pred CccccccCCCceEeeee----------eecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE
Confidence 46899999999986533 78999999998632 18999999998854
No 112
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0039 Score=58.83 Aligned_cols=31 Identities=35% Similarity=0.761 Sum_probs=19.9
Q ss_pred eCCCCCCccEEEceeeeeeccceEEEEeeEEEEE
Q 017647 267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300 (368)
Q Consensus 267 ~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~ 300 (368)
.|+.|.|+|. .+|.+|+|.|-+.....+.|.
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence 4555555543 578889888877665555554
No 113
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.91 E-value=0.0083 Score=60.68 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=28.1
Q ss_pred chhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 017647 80 YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP 113 (368)
Q Consensus 80 y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~ 113 (368)
|+-+.|..-.+.++|||||||..+..||||.+..
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCC
Confidence 3444556677999999999999999999998765
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0096 Score=52.53 Aligned_cols=63 Identities=33% Similarity=0.536 Sum_probs=48.8
Q ss_pred ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 78 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
|++..+|+.+.+ ..+.++..|+.+++.+|||+..... +-+.+..++.||.+|.||.+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455556665544 4466889999999999999975432 33568899999999999999999864
No 115
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.012 Score=55.73 Aligned_cols=58 Identities=26% Similarity=0.630 Sum_probs=34.1
Q ss_pred eeecccccCCccccC--ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 222 LETCEVCTGTGAKMG--SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
...|+.|+|.|...- ..+..|..|-|- .. --.-+...|..|+|+|+ ..|.+|.|.|.+
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~---~~------~k~gt~~~C~~C~G~G~---~~C~tC~grG~k 257 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGV---PP------PKIGTHDLCYMCHGRGI---KECHTCKGRGKK 257 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCC---CC------CCCCccchhhhccCCCc---ccCCcccCCCCc
Confidence 467888888885321 125567777661 00 01122356777777775 467777777766
No 116
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.26 E-value=0.092 Score=43.77 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=41.8
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhh
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r 135 (368)
..-.+||||++..+.+||.+.|.+|-...+|++. ++.-.=.+|..|.|.|..+.+.
T Consensus 58 ~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 58 DEARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp HHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999976 5666667888999988766543
No 117
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.082 Score=50.45 Aligned_cols=98 Identities=23% Similarity=0.393 Sum_probs=64.0
Q ss_pred ccccceeeEeecceeecccccCCccc-----cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeee
Q 017647 209 SIFGAEKEFELSHLETCEVCTGTGAK-----MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 283 (368)
Q Consensus 209 ~~~G~~~~~~~~~~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~ 283 (368)
...|.. .........|..|.|+|.. ......+|..|+|.|.++. ..|..|.|.|.+...+-.
T Consensus 169 t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~~k~i 235 (288)
T KOG0715|consen 169 TCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRRAKDI 235 (288)
T ss_pred cccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhhheeE
Confidence 333433 3334567899999999932 1122337999999999876 459999999977666666
Q ss_pred eeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCC
Q 017647 284 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321 (368)
Q Consensus 284 ~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~ 321 (368)
....++.+...-+|++..+... .-.+++.-..++..
T Consensus 236 ~i~~~~g~~~~~~l~~~~~~~~--~l~v~~~v~~~~~~ 271 (288)
T KOG0715|consen 236 MIVLPAGVRSADTLRFAGHGND--DLFVRLIVAKSPSF 271 (288)
T ss_pred EeecCcccccccEEEEecCCcc--eEEEEEEeccCccc
Confidence 6666666666666666655443 44455555555443
No 118
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=87.16 E-value=1.2 Score=39.89 Aligned_cols=41 Identities=34% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchh
Q 017647 86 PKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDK 133 (368)
Q Consensus 86 ~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~ 133 (368)
+++|+.|||.+|+.++..+|--| ++.-.+|..||+.+.-..
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998443 455677999999765443
No 119
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=85.60 E-value=2.6 Score=31.40 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=33.9
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFK 120 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~ 120 (368)
|++|.-+++|+++.|+..||+.|-++.+++..=-..+.....+.|.
T Consensus 1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe 46 (88)
T COG5552 1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFE 46 (88)
T ss_pred CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567778899999999999999998888886444443333445554
No 120
>PF13446 RPT: A repeated domain in UCH-protein
Probab=85.52 E-value=1.5 Score=31.52 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=23.9
Q ss_pred ccchhcCCCCCCCHHHHHHHHHHHHH
Q 017647 78 DYYATLGVPKSASGKEIKAAYRKLAR 103 (368)
Q Consensus 78 d~y~iLgv~~~a~~~eIk~ayr~l~~ 103 (368)
+-|+.|||+++.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998876
No 121
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=81.00 E-value=6.6 Score=29.45 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=34.2
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHH
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFK 120 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~ 120 (368)
|++|--.+.|+.|.|+.+||..|-.+.++|..=-..+.....+.|.
T Consensus 1 MCRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~ 46 (78)
T PF10041_consen 1 MCRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFD 46 (78)
T ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHH
Confidence 4556667778999999999999999999987655554444455554
No 122
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=80.99 E-value=6.5 Score=34.18 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=16.8
Q ss_pred eEEEEEeCCCCcCCCEEEEcc
Q 017647 295 KNIKVKVPPGVSTGSILRVVG 315 (368)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g 315 (368)
-.+.+.||||...|..-.++|
T Consensus 80 PEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 80 PELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeeEEecCCCCCcEEEehHH
Confidence 357788899998888888866
No 123
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=78.95 E-value=13 Score=33.38 Aligned_cols=75 Identities=24% Similarity=0.525 Sum_probs=40.9
Q ss_pred eCCCCCCccEEE-Eeee-CC-Ccc-eeeeeeCCCCCCccEEEc------eeeee--eccc-----eEEE------EeeEE
Q 017647 241 ICSTCGGRGQVM-RTDQ-TP-FGL-FSQVSVCPSCGGEGEVIS------EYCRK--CSGE-----GRIR------LKKNI 297 (368)
Q Consensus 241 ~C~~C~G~G~~~-~~~~-~~-~g~-~~~~~~C~~C~G~G~~~~------~~C~~--C~g~-----g~v~------~~~~l 297 (368)
.|+.|++.|... .... +| |+- +.+...|+.|+=+-.-+. .+... +... .+++ .--.+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 477777776642 2233 33 443 345578999986643221 11111 1111 0111 11247
Q ss_pred EEEeCCC-CcCCCEEEEcc
Q 017647 298 KVKVPPG-VSTGSILRVVG 315 (368)
Q Consensus 298 ~V~Ip~G-~~~G~~i~l~g 315 (368)
.+.|||| ...|..-+++|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 7899999 78998888866
No 124
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=78.25 E-value=1.9 Score=41.85 Aligned_cols=53 Identities=36% Similarity=0.529 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 88 SASGKEIKAAYRKLARQYHPDVNK-----EPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 88 ~a~~~eIk~ayr~l~~~~hPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
-++..+|..+|+..++..||++.. .....+.|++|.+||++|.+..+|..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 357789999999999999999863 22566789999999999998665544443
No 125
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.77 E-value=2.3 Score=39.84 Aligned_cols=52 Identities=33% Similarity=0.590 Sum_probs=35.6
Q ss_pred eeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeec
Q 017647 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS 286 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 286 (368)
...|..|.|-+. ..|..|+|+-+++... .-......|..|+-.|.+. |+.|.
T Consensus 229 ~~~C~~CGg~rF------lpC~~C~GS~kv~~~~----~~~~~~~rC~~CNENGLvr---Cp~Cs 280 (281)
T KOG2824|consen 229 GGVCESCGGARF------LPCSNCHGSCKVHEEE----EDDGGVLRCLECNENGLVR---CPVCS 280 (281)
T ss_pred CCcCCCcCCcce------EecCCCCCceeeeeec----cCCCcEEECcccCCCCcee---CCccC
Confidence 367889988764 5799999998876521 1111236899999999864 55553
No 126
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=75.63 E-value=1.9 Score=48.30 Aligned_cols=62 Identities=29% Similarity=0.527 Sum_probs=39.1
Q ss_pred ccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccE---EEceeeeeecc
Q 017647 211 FGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE---VISEYCRKCSG 287 (368)
Q Consensus 211 ~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~---~~~~~C~~C~g 287 (368)
.+...++.+. ...|+.|..... ...|+.|+..-.. ...|+.|+..=. .....|+.|..
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCC
Confidence 4444455553 578999987543 2389999876321 147999987411 01348999987
Q ss_pred ceEE
Q 017647 288 EGRI 291 (368)
Q Consensus 288 ~g~v 291 (368)
+-..
T Consensus 718 plv~ 721 (1337)
T PRK14714 718 ELTP 721 (1337)
T ss_pred cccc
Confidence 6544
No 127
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.33 E-value=3.6 Score=38.64 Aligned_cols=37 Identities=30% Similarity=0.794 Sum_probs=29.7
Q ss_pred eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc--------eeeeeeccceEE
Q 017647 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--------EYCRKCSGEGRI 291 (368)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------~~C~~C~g~g~v 291 (368)
..|..|+|.+. .+|..|+|.-++.. ..|..|+=.|-+
T Consensus 230 ~~C~~CGg~rF---------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARF---------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcce---------------EecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 47999999876 47999999988876 389999876654
No 128
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=75.08 E-value=3.6 Score=35.22 Aligned_cols=47 Identities=34% Similarity=0.671 Sum_probs=30.3
Q ss_pred eeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEE
Q 017647 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 277 (368)
...|..|.|.+. ..|..|+|+=+++.......+ ....|+.|+-.|.+
T Consensus 99 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~~~~---~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARF------VPCSECNGSCKVFAENATAAG---GFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCe------EECCCCCCcceEEeccCcccc---cEEECCCCCccccc
Confidence 356999988764 579999998887653311011 12578888777653
No 129
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.67 E-value=2.7 Score=46.56 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=18.3
Q ss_pred eCCCCCCccEEEEeeeCCCcceee-eeeCCCCCCccEE
Q 017647 241 ICSTCGGRGQVMRTDQTPFGLFSQ-VSVCPSCGGEGEV 277 (368)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~ 277 (368)
.|+.|.|.|.+... ++++.. ..+|+.|+|+.+.
T Consensus 738 ~C~~C~G~G~~~~~----~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 738 RCEACQGDGVIKIE----MHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCccceEEEEE----ccCCCCcccCCCCcCCceeC
Confidence 47777777766432 122222 2567777776654
No 130
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=68.31 E-value=8.4 Score=26.74 Aligned_cols=37 Identities=32% Similarity=0.746 Sum_probs=18.3
Q ss_pred eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEE
Q 017647 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (368)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 277 (368)
+.||-|+|....++......+... ...|..|+..|..
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~-~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSH-YFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEE-EEECCCCCCCccc
Confidence 457777777764431111111111 1267777776654
No 131
>PRK04023 DNA polymerase II large subunit; Validated
Probab=67.66 E-value=2.8 Score=46.06 Aligned_cols=64 Identities=28% Similarity=0.570 Sum_probs=40.6
Q ss_pred cccccc-cceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeee
Q 017647 206 FSESIF-GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284 (368)
Q Consensus 206 lee~~~-G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 284 (368)
+.+|+. +...++.+ ....|+.|.-.+ ....|+.|+..-..+ ..|+.|+-... ...|++
T Consensus 610 i~~A~~~~g~~eVEV-g~RfCpsCG~~t-----~~frCP~CG~~Te~i-------------~fCP~CG~~~~--~y~CPK 668 (1121)
T PRK04023 610 INKAAKYKGTIEVEI-GRRKCPSCGKET-----FYRRCPFCGTHTEPV-------------YRCPRCGIEVE--EDECEK 668 (1121)
T ss_pred HHHHHhcCCceeecc-cCccCCCCCCcC-----CcccCCCCCCCCCcc-------------eeCccccCcCC--CCcCCC
Confidence 556665 45555554 347899997664 246899998762211 46999954432 356999
Q ss_pred eccceE
Q 017647 285 CSGEGR 290 (368)
Q Consensus 285 C~g~g~ 290 (368)
|.-+-.
T Consensus 669 CG~El~ 674 (1121)
T PRK04023 669 CGREPT 674 (1121)
T ss_pred CCCCCC
Confidence 976543
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=66.03 E-value=4.8 Score=34.44 Aligned_cols=35 Identities=31% Similarity=0.878 Sum_probs=26.4
Q ss_pred eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc---------eeeeeeccce
Q 017647 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------EYCRKCSGEG 289 (368)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------~~C~~C~g~g 289 (368)
..|..|+|.+. .+|..|+|.-++.. ..|+.|+=.|
T Consensus 100 ~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cneng 143 (147)
T cd03031 100 GVCEGCGGARF---------------VPCSECNGSCKVFAENATAAGGFLRCPECNENG 143 (147)
T ss_pred CCCCCCCCcCe---------------EECCCCCCcceEEeccCcccccEEECCCCCccc
Confidence 46999999886 47999999987653 2677776544
No 133
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=65.46 E-value=6.6 Score=37.82 Aligned_cols=41 Identities=24% Similarity=0.587 Sum_probs=23.3
Q ss_pred eeecccccCCc--------cccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647 222 LETCEVCTGTG--------AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (368)
Q Consensus 222 ~~~C~~C~G~G--------~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (368)
...|+.|.+.= ...|.+...|..|+-.=...+ ..|+.|+-.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR------------VKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC------------ccCCCCCCC
Confidence 45688887652 124455666777765433332 457777544
No 134
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=63.08 E-value=7.1 Score=43.44 Aligned_cols=34 Identities=21% Similarity=0.469 Sum_probs=18.3
Q ss_pred eCCCCCCccEEEEeeeCCCcceee-eeeCCCCCCccEEE
Q 017647 241 ICSTCGGRGQVMRTDQTPFGLFSQ-VSVCPSCGGEGEVI 278 (368)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~ 278 (368)
.|+.|.|.|.+.... .++-. ..+|+.|+|+.+..
T Consensus 740 ~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~~~ 774 (943)
T PRK00349 740 RCEACQGDGVIKIEM----HFLPDVYVPCDVCKGKRYNR 774 (943)
T ss_pred CCCcccccceEEEEe----ccCCCccccCccccCccccc
Confidence 377777777665322 11111 25677777766543
No 135
>PRK05978 hypothetical protein; Provisional
Probab=61.67 E-value=3.7 Score=35.14 Aligned_cols=25 Identities=36% Similarity=1.093 Sum_probs=13.6
Q ss_pred eCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 241 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
+||.| |+|+..+ |++.....|+.|+
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCccccC
Confidence 46666 4555443 3444556666665
No 136
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=60.31 E-value=2.9 Score=45.11 Aligned_cols=50 Identities=32% Similarity=0.710 Sum_probs=0.0
Q ss_pred eeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
...|+.|.-... ...|+.|+..-..+ -.|+.|+-. +..+.|++|......
T Consensus 655 ~r~Cp~Cg~~t~-----~~~Cp~CG~~T~~~-------------~~Cp~C~~~--~~~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 655 RRRCPKCGKETF-----YNRCPECGSHTEPV-------------YVCPDCGIE--VEEDECPKCGRETTS 704 (900)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCcccCCcch-----hhcCcccCCccccc-------------eeccccccc--cCccccccccccCcc
Confidence 467888865543 46899997654332 468888763 334689999876543
No 137
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=59.29 E-value=16 Score=29.70 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-c----chHHHHHHHHHHHhhccc
Q 017647 87 KSASGKEIKAAYRKLARQYHPDVNKE-P----GATEKFKEISAAYEVLSD 131 (368)
Q Consensus 87 ~~a~~~eIk~ayr~l~~~~hPD~~~~-~----~~~~~f~~i~~Ay~~L~d 131 (368)
+..+..+++.|.|.+-++.|||...+ | ..++-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 34577899999999999999997532 2 234557777766666654
No 138
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=55.58 E-value=49 Score=28.82 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=15.1
Q ss_pred EEEEEeCCCC-cCCCEEEEcc
Q 017647 296 NIKVKVPPGV-STGSILRVVG 315 (368)
Q Consensus 296 ~l~V~Ip~G~-~~G~~i~l~g 315 (368)
.+.+.||||. ..|..-+++|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 4778888987 6887777765
No 139
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=54.37 E-value=13 Score=35.83 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=16.2
Q ss_pred eecccccCCc---------cccCceeeeCCCCCCccE
Q 017647 223 ETCEVCTGTG---------AKMGSKMRICSTCGGRGQ 250 (368)
Q Consensus 223 ~~C~~C~G~G---------~~~~~~~~~C~~C~G~G~ 250 (368)
..|+.|.+.= ...|.+...|..|...=.
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~ 221 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWH 221 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccc
Confidence 4688886652 124455666777765433
No 140
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=53.95 E-value=7.6 Score=19.34 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhcc
Q 017647 118 KFKEISAAYEVLS 130 (368)
Q Consensus 118 ~f~~i~~Ay~~L~ 130 (368)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888774
No 141
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=53.80 E-value=7.9 Score=45.82 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=22.3
Q ss_pred eCCCCCCccEEEEeeeCCCcceeee-eeCCCCCCccEEE
Q 017647 241 ICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEVI 278 (368)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~~ 278 (368)
.|+.|.|.|.+... +.++-.. .+|+.|+|+.+..
T Consensus 1609 rC~~C~G~G~i~i~----m~fl~dv~~~C~~C~G~R~~~ 1643 (1809)
T PRK00635 1609 QCSDCWGLGYQWID----RAFYALEKRPCPTCSGFRIQP 1643 (1809)
T ss_pred CCCCCccCceEEEe----cccCCCcccCCCCCCCcCCCH
Confidence 49999999986432 2233332 6899998887643
No 142
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=52.48 E-value=7.8 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.600 Sum_probs=17.4
Q ss_pred ceeecccccCCccccCceeeeCCCCC
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCG 246 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~ 246 (368)
..++|+.|.-.-.-.+..+.+||.|+
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCC
Confidence 34567777766666666667777775
No 143
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=51.04 E-value=19 Score=39.09 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=20.3
Q ss_pred eeCCCCCCccEEEEeeeCCCcceeee-eeCCCCCCccEEE
Q 017647 240 RICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEVI 278 (368)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~~ 278 (368)
-.|..|.|.|.+.... .|+-.. .+|+.|+|+-+-.
T Consensus 731 GRCe~C~GdG~ikIeM----~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 731 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred cCCccccCCceEEEEe----ccCCCceeeCCCcCCccccc
Confidence 3677777777764432 122222 5777777776543
No 144
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.66 E-value=6 Score=43.91 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=23.5
Q ss_pred eeCCCCCCccEEEc---------eeeeeeccceEEEEe
Q 017647 266 SVCPSCGGEGEVIS---------EYCRKCSGEGRIRLK 294 (368)
Q Consensus 266 ~~C~~C~G~G~~~~---------~~C~~C~g~g~v~~~ 294 (368)
-.|+.|.|.|.+.. ..|..|+|.....+.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 34999999999873 499999999876543
No 145
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=50.35 E-value=54 Score=26.77 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=13.6
Q ss_pred ceeecccccCCccccCceeeeCCCCCCcc
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 249 (368)
....|..|+-...........||.|++..
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 34567777643322222222366665544
No 146
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=50.23 E-value=4.2 Score=32.12 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=19.4
Q ss_pred eCCCCCCccEEEEeeeCCCc-ceeeeeeCCCCCCccEE
Q 017647 241 ICSTCGGRGQVMRTDQTPFG-LFSQVSVCPSCGGEGEV 277 (368)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g-~~~~~~~C~~C~G~G~~ 277 (368)
.|..|+|.|.++-..+.-.. -+--...|..|.|.|+.
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 46666776655432221111 01122578888888875
No 147
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=48.64 E-value=11 Score=42.02 Aligned_cols=28 Identities=29% Similarity=0.644 Sum_probs=23.3
Q ss_pred eCCCCCCccEEEc---------eeeeeeccceEEEEe
Q 017647 267 VCPSCGGEGEVIS---------EYCRKCSGEGRIRLK 294 (368)
Q Consensus 267 ~C~~C~G~G~~~~---------~~C~~C~g~g~v~~~ 294 (368)
.|+.|.|.|.+.. ..|..|+|.....+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 5999999999864 389999999876554
No 148
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=48.48 E-value=16 Score=22.86 Aligned_cols=12 Identities=58% Similarity=1.317 Sum_probs=6.0
Q ss_pred eeCCCCCCccEE
Q 017647 240 RICSTCGGRGQV 251 (368)
Q Consensus 240 ~~C~~C~G~G~~ 251 (368)
..|..|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 345555555543
No 149
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=48.30 E-value=65 Score=29.03 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=27.5
Q ss_pred eeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCC-CCCCCCccEE
Q 017647 266 SVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAG-PRGGPPGDLY 330 (368)
Q Consensus 266 ~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~-~~~~~~GDL~ 330 (368)
..|..|+...-+...+-..=....-+.....++|+|..-...|+-+.-. +|... ..+..+||.+
T Consensus 120 l~C~aCGa~~~v~~~~~~~~~~~~~~~~~e~~~v~Ie~l~~~G~GVak~-~g~~vfV~galpGE~V 184 (201)
T PRK12336 120 LRCDACGAHRPVKKRKASSETQREAIEEGKTYEVEITGTGRKGDGVAKK-GKYTIFVPGAKKGEVV 184 (201)
T ss_pred EEcccCCCCccccccccccCCCCCCCccCCEEEEEEEEccCCCceEEEE-CCEEEEeCCCCCCCEE
Confidence 4577776666544322111011111222334556665555566555421 12110 1245577764
No 150
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.98 E-value=13 Score=40.07 Aligned_cols=53 Identities=25% Similarity=0.542 Sum_probs=37.1
Q ss_pred cceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccce
Q 017647 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 289 (368)
Q Consensus 220 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g 289 (368)
.....|..|.- ...|+.|...=..-+ ....-.|..|+-. ..+...|+.|.+.-
T Consensus 433 s~~l~C~~Cg~--------v~~Cp~Cd~~lt~H~--------~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 433 APLLLCRDCGY--------IAECPNCDSPLTLHK--------ATGQLRCHYCGYQ-EPIPQSCPECGSEH 485 (730)
T ss_pred cceeecccCCC--------cccCCCCCcceEEec--------CCCeeEeCCCCCC-CCCCCCCCCCCCCe
Confidence 44678999964 568999987532211 1223679999887 56778999998773
No 151
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=44.65 E-value=11 Score=40.04 Aligned_cols=49 Identities=31% Similarity=0.666 Sum_probs=31.8
Q ss_pred eecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccc
Q 017647 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (368)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 288 (368)
..|+.|+..- ....+.|+.|+..-. ...|+.|+-.=..-.+.|..|.-.
T Consensus 2 ~~Cp~Cg~~n---~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN---PNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC---CCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCCc
Confidence 4688886442 223467999954321 146999987765566789988654
No 152
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=43.69 E-value=34 Score=24.07 Aligned_cols=13 Identities=46% Similarity=0.973 Sum_probs=8.0
Q ss_pred eeeeeccceEEEE
Q 017647 281 YCRKCSGEGRIRL 293 (368)
Q Consensus 281 ~C~~C~g~g~v~~ 293 (368)
.|++|.-+-.+..
T Consensus 30 yCpKCK~EtlI~v 42 (55)
T PF14205_consen 30 YCPKCKQETLIDV 42 (55)
T ss_pred cCCCCCceEEEEe
Confidence 6777766655543
No 153
>PF14353 CpXC: CpXC protein
Probab=43.69 E-value=15 Score=30.36 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=8.3
Q ss_pred eeCCCCCCccEE
Q 017647 266 SVCPSCGGEGEV 277 (368)
Q Consensus 266 ~~C~~C~G~G~~ 277 (368)
.+|+.|+....+
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 567777777653
No 154
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=41.40 E-value=37 Score=28.20 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=16.0
Q ss_pred eEEEEEeCCCCcCCCEEEEccC
Q 017647 295 KNIKVKVPPGVSTGSILRVVGE 316 (368)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g~ 316 (368)
..+++.-+.+++.||.+.+.-+
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEec
Confidence 4566666788888888887644
No 155
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=40.21 E-value=20 Score=23.33 Aligned_cols=8 Identities=88% Similarity=2.075 Sum_probs=5.2
Q ss_pred eeCCCCCC
Q 017647 266 SVCPSCGG 273 (368)
Q Consensus 266 ~~C~~C~G 273 (368)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 55777766
No 156
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=38.84 E-value=22 Score=38.63 Aligned_cols=33 Identities=33% Similarity=0.721 Sum_probs=24.6
Q ss_pred eeCCCCCCccEEEce---------eeeeeccceEEEEeeEEEEE
Q 017647 266 SVCPSCGGEGEVISE---------YCRKCSGEGRIRLKKNIKVK 300 (368)
Q Consensus 266 ~~C~~C~G~G~~~~~---------~C~~C~g~g~v~~~~~l~V~ 300 (368)
-.|..|.|.|.+.-+ .|..|+|+.+-.+ +++|+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E--tLev~ 772 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE--TLEVK 772 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccccc--eEEEE
Confidence 469999999987643 8999999887543 34444
No 157
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=38.82 E-value=67 Score=25.50 Aligned_cols=52 Identities=25% Similarity=0.530 Sum_probs=34.0
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhc-cccc
Q 017647 84 GVPKSASG-KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD-QYGE 143 (368)
Q Consensus 84 gv~~~a~~-~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd-~~g~ 143 (368)
|++|+... .+|-+.++.+...+++. ..+.+..+.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~------~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG------DPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 55665543 55667777777777762 356788888888 77899999998 6653
No 158
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=38.24 E-value=37 Score=29.31 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=19.2
Q ss_pred eCCCCCCcc-EEEEeeeCCCcc-eeeeeeCCCCCCcc
Q 017647 241 ICSTCGGRG-QVMRTDQTPFGL-FSQVSVCPSCGGEG 275 (368)
Q Consensus 241 ~C~~C~G~G-~~~~~~~~~~g~-~~~~~~C~~C~G~G 275 (368)
.||.|+..- .++...-+..|. ......|+.|+.+=
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 477777655 444444444453 22236677777653
No 159
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=38.19 E-value=36 Score=20.27 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhCC
Q 017647 91 GKEIKAAYRKLARQYHP 107 (368)
Q Consensus 91 ~~eIk~ayr~l~~~~hP 107 (368)
.++.|.+-|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 37788899999999994
No 160
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=37.92 E-value=18 Score=30.03 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=17.4
Q ss_pred ceeecccccCCccccCceeeeCCCCCC
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGG 247 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G 247 (368)
...+|+.|.-.-.-.+..+.+||.|+-
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCC
Confidence 345677776666666566677777753
No 161
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=37.88 E-value=42 Score=27.28 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=12.4
Q ss_pred ceeecccccCCccccCceeeeCCCCCCcc
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 249 (368)
....|..|........ ....||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~-~~~~CP~Cgs~~ 96 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQ-HDAQCPHCHGER 96 (113)
T ss_pred cEEEcccCCCEEecCC-cCccCcCCCCCC
Confidence 3456766664332221 112255555443
No 162
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=36.57 E-value=36 Score=29.11 Aligned_cols=39 Identities=23% Similarity=0.625 Sum_probs=20.1
Q ss_pred ccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEE
Q 017647 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (368)
Q Consensus 232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 278 (368)
|-..+.-..+|..|+-.=.+... ....+|+.|++..+..
T Consensus 105 GE~~g~G~l~C~~Cg~~~~~~~~--------~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 105 GEVVGPGTLVCENCGHEVELTHP--------ERLPPCPKCGHTEFTR 143 (146)
T ss_pred CcEecCceEecccCCCEEEecCC--------CcCCCCCCCCCCeeee
Confidence 33333345677777533222111 1225788888877653
No 163
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=34.98 E-value=30 Score=24.49 Aligned_cols=9 Identities=56% Similarity=1.748 Sum_probs=5.7
Q ss_pred eeCCCCCCc
Q 017647 266 SVCPSCGGE 274 (368)
Q Consensus 266 ~~C~~C~G~ 274 (368)
..|+.|++.
T Consensus 18 ~~CP~CG~~ 26 (56)
T PRK13130 18 EICPVCGGK 26 (56)
T ss_pred ccCcCCCCC
Confidence 567777654
No 164
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.31 E-value=12 Score=30.87 Aligned_cols=25 Identities=40% Similarity=1.163 Sum_probs=12.2
Q ss_pred eCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 241 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 241 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
.||.| |.|+..+ |++.....|..|+
T Consensus 23 rCP~C-GeGrLF~------gFLK~~p~C~aCG 47 (126)
T COG5349 23 RCPRC-GEGRLFR------GFLKVVPACEACG 47 (126)
T ss_pred CCCCC-CCchhhh------hhcccCchhhhcc
Confidence 46666 4555433 3333344555553
No 165
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=34.19 E-value=26 Score=22.37 Aligned_cols=7 Identities=57% Similarity=1.630 Sum_probs=3.6
Q ss_pred eeCCCCC
Q 017647 266 SVCPSCG 272 (368)
Q Consensus 266 ~~C~~C~ 272 (368)
..|+.|+
T Consensus 26 vrC~~C~ 32 (37)
T PF13719_consen 26 VRCPKCG 32 (37)
T ss_pred EECCCCC
Confidence 4455554
No 166
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=33.66 E-value=49 Score=28.68 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=17.1
Q ss_pred eeCCCCCCccEEE-EeeeC-CCcc-eeeeeeCCCCCCccE
Q 017647 240 RICSTCGGRGQVM-RTDQT-PFGL-FSQVSVCPSCGGEGE 276 (368)
Q Consensus 240 ~~C~~C~G~G~~~-~~~~~-~~g~-~~~~~~C~~C~G~G~ 276 (368)
..|+.|+..|... ....+ .|+- +.+...|+.|+=+-.
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 41 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNN 41 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEE
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEee
Confidence 3577777777542 22222 2332 234468999876543
No 167
>PRK14873 primosome assembly protein PriA; Provisional
Probab=33.45 E-value=38 Score=36.32 Aligned_cols=53 Identities=19% Similarity=0.435 Sum_probs=35.4
Q ss_pred cceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceE
Q 017647 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGR 290 (368)
Q Consensus 220 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~ 290 (368)
.....|..|.- ...|+.|.+.=...+. ...-.|..|+-.- ....|+.|.+...
T Consensus 381 ap~l~C~~Cg~--------~~~C~~C~~~L~~h~~--------~~~l~Ch~CG~~~--~p~~Cp~Cgs~~l 433 (665)
T PRK14873 381 VPSLACARCRT--------PARCRHCTGPLGLPSA--------GGTPRCRWCGRAA--PDWRCPRCGSDRL 433 (665)
T ss_pred CCeeEhhhCcC--------eeECCCCCCceeEecC--------CCeeECCCCcCCC--cCccCCCCcCCcc
Confidence 34568999963 5689999875433211 1125799998753 4789999987643
No 168
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=32.36 E-value=23 Score=32.81 Aligned_cols=11 Identities=45% Similarity=1.268 Sum_probs=5.7
Q ss_pred eCCCCCCccEE
Q 017647 241 ICSTCGGRGQV 251 (368)
Q Consensus 241 ~C~~C~G~G~~ 251 (368)
+||+|.|.|++
T Consensus 40 tCPTCqGtGrI 50 (238)
T PF07092_consen 40 TCPTCQGTGRI 50 (238)
T ss_pred cCCCCcCCccC
Confidence 45555555544
No 169
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=31.83 E-value=58 Score=26.47 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=12.6
Q ss_pred ceeecccccCCccccCceeeeCCCCCCcc
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 249 (368)
....|..|+-.-.........||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 34566666533222211123355555443
No 170
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.03 E-value=40 Score=34.84 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=30.5
Q ss_pred ceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccce
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 289 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g 289 (368)
....|..|.- ...|+.|.+.=..-+. ...-.|..|+-. ..+...|+.|.+..
T Consensus 212 ~~~~C~~Cg~--------~~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~-~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 212 KNLLCRSCGY--------ILCCPNCDVSLTYHKK--------EGKLRCHYCGYQ-EPIPKTCPQCGSED 263 (505)
T ss_pred CeeEhhhCcC--------ccCCCCCCCceEEecC--------CCeEEcCCCcCc-CCCCCCCCCCCCCe
Confidence 3467888864 4579999764322211 112468888633 23446788887653
No 171
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=29.98 E-value=48 Score=27.04 Aligned_cols=7 Identities=57% Similarity=1.758 Sum_probs=3.5
Q ss_pred CCCCCCc
Q 017647 242 CSTCGGR 248 (368)
Q Consensus 242 C~~C~G~ 248 (368)
||.|++.
T Consensus 1 CPvCg~~ 7 (113)
T PF09862_consen 1 CPVCGGE 7 (113)
T ss_pred CCCCCCc
Confidence 5555544
No 172
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.80 E-value=64 Score=23.96 Aligned_cols=50 Identities=28% Similarity=0.773 Sum_probs=20.0
Q ss_pred ecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc------eeeeeecc
Q 017647 224 TCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS------EYCRKCSG 287 (368)
Q Consensus 224 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~g 287 (368)
.||.|+.. .........|..|... |.....||.|+-.=.+.+ -.|.+|+|
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~-------------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKD-------------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--E-------------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCc-cEEeCCEEECcccccc-------------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 46666654 1111134566666542 223356777766554432 25555554
No 173
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=28.33 E-value=79 Score=25.91 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=27.6
Q ss_pred EEEeCCCCcCCCEEEEccCCCCCCCC------CCCccEEEEEEEEeC
Q 017647 298 KVKVPPGVSTGSILRVVGEGDAGPRG------GPPGDLYVYLDVEEI 338 (368)
Q Consensus 298 ~V~Ip~G~~~G~~i~l~g~G~~~~~~------~~~GDL~v~i~v~~~ 338 (368)
+..||.|+++|+.|.+.|.=...+.. ...+|+.+++++..+
T Consensus 2 ~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~ 48 (128)
T smart00276 2 TLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFN 48 (128)
T ss_pred cccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCC
Confidence 45789999999999999875543210 112577777776654
No 174
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=28.14 E-value=44 Score=21.89 Aligned_cols=9 Identities=33% Similarity=1.136 Sum_probs=5.1
Q ss_pred eCCCCCCcc
Q 017647 241 ICSTCGGRG 249 (368)
Q Consensus 241 ~C~~C~G~G 249 (368)
+||.|+...
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466666544
No 175
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=27.88 E-value=1.3e+02 Score=21.85 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 96 AAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 96 ~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
+..|...++-||+. ...+..+.|.+.|..|++.++...+|.
T Consensus 14 ~~~r~~~~~~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK----ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566666778985 356778899999999998887765554
No 176
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=27.86 E-value=48 Score=26.87 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=12.1
Q ss_pred ceeecccccCCccccCceeeeCCCCCCcc
Q 017647 221 HLETCEVCTGTGAKMGSKMRICSTCGGRG 249 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 249 (368)
....|..|.-........ ..||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~-~~CP~Cgs~~ 96 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDEFD-FSCPRCGSPD 96 (113)
T ss_dssp -EEEETTTS-EEECHHCC-HH-SSSSSS-
T ss_pred CcEECCCCCCEEecCCCC-CCCcCCcCCC
Confidence 345677776554332222 3466665554
No 177
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=27.60 E-value=39 Score=24.09 Aligned_cols=10 Identities=50% Similarity=1.428 Sum_probs=5.7
Q ss_pred eeCCCCCCcc
Q 017647 266 SVCPSCGGEG 275 (368)
Q Consensus 266 ~~C~~C~G~G 275 (368)
..|+.|+|.-
T Consensus 18 e~Cp~CG~~t 27 (59)
T COG2260 18 EKCPVCGGDT 27 (59)
T ss_pred ccCCCCCCcc
Confidence 4666666543
No 178
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=27.54 E-value=25 Score=32.48 Aligned_cols=15 Identities=40% Similarity=1.055 Sum_probs=12.9
Q ss_pred eeCCCCCCccEEEce
Q 017647 266 SVCPSCGGEGEVISE 280 (368)
Q Consensus 266 ~~C~~C~G~G~~~~~ 280 (368)
.+|+.|+|.|++.++
T Consensus 39 vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 39 VTCPTCQGTGRIPRE 53 (238)
T ss_pred CcCCCCcCCccCCcc
Confidence 689999999998654
No 179
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=26.59 E-value=1.4e+02 Score=20.59 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 95 k~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.+.++...+.-|||. ...+..+.+.+.|..|++.++..-+|.
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445666777788884 356788899999999998776655544
No 180
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=26.32 E-value=20 Score=42.69 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=22.5
Q ss_pred eeCCCCCCccEEEce---------eeeeeccceEEEE
Q 017647 266 SVCPSCGGEGEVISE---------YCRKCSGEGRIRL 293 (368)
Q Consensus 266 ~~C~~C~G~G~~~~~---------~C~~C~g~g~v~~ 293 (368)
-.|+.|.|.|.+..+ .|..|+|+.+-.+
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 359999999987543 8999999987643
No 181
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.31 E-value=88 Score=25.44 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=4.6
Q ss_pred eeeccccc
Q 017647 222 LETCEVCT 229 (368)
Q Consensus 222 ~~~C~~C~ 229 (368)
...|..|+
T Consensus 70 ~~~C~~Cg 77 (115)
T TIGR00100 70 ECECEDCS 77 (115)
T ss_pred EEEcccCC
Confidence 34566665
No 182
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.96 E-value=58 Score=24.68 Aligned_cols=8 Identities=50% Similarity=1.472 Sum_probs=4.1
Q ss_pred eeCCCCCC
Q 017647 266 SVCPSCGG 273 (368)
Q Consensus 266 ~~C~~C~G 273 (368)
.-|+.|.|
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 34555554
No 183
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=25.89 E-value=1.3e+02 Score=19.52 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=7.1
Q ss_pred eCCCCCCccEEE
Q 017647 241 ICSTCGGRGQVM 252 (368)
Q Consensus 241 ~C~~C~G~G~~~ 252 (368)
.|+.|+....+.
T Consensus 2 ~Cp~C~~~~a~~ 13 (40)
T smart00440 2 PCPKCGNREATF 13 (40)
T ss_pred cCCCCCCCeEEE
Confidence 467776555544
No 184
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=25.85 E-value=1e+02 Score=22.46 Aligned_cols=8 Identities=38% Similarity=1.024 Sum_probs=4.7
Q ss_pred eeCCCCCC
Q 017647 266 SVCPSCGG 273 (368)
Q Consensus 266 ~~C~~C~G 273 (368)
..|++|+=
T Consensus 37 v~C~~CGY 44 (64)
T PF09855_consen 37 VSCTNCGY 44 (64)
T ss_pred EECCCCCC
Confidence 45776653
No 185
>PRK11032 hypothetical protein; Provisional
Probab=25.62 E-value=73 Score=27.69 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhCCC
Q 017647 93 EIKAAYRKLARQYHPD 108 (368)
Q Consensus 93 eIk~ayr~l~~~~hPD 108 (368)
.++++|.++.....-+
T Consensus 3 k~~~~Y~~ll~~v~~~ 18 (160)
T PRK11032 3 KVAQYYRELVASLTER 18 (160)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4677888877555444
No 186
>PRK05580 primosome assembly protein PriA; Validated
Probab=24.93 E-value=45 Score=35.84 Aligned_cols=51 Identities=25% Similarity=0.613 Sum_probs=30.2
Q ss_pred eeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccce
Q 017647 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 289 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g 289 (368)
...|..|.- ...|+.|.+.=...+ ......|..|+-. ......|+.|.+..
T Consensus 381 ~~~C~~Cg~--------~~~C~~C~~~l~~h~--------~~~~l~Ch~Cg~~-~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCGW--------VAECPHCDASLTLHR--------FQRRLRCHHCGYQ-EPIPKACPECGSTD 431 (679)
T ss_pred ceEhhhCcC--------ccCCCCCCCceeEEC--------CCCeEECCCCcCC-CCCCCCCCCCcCCe
Confidence 567888864 457888887322111 0112468888754 33456788886653
No 187
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.84 E-value=1.1e+02 Score=25.33 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=36.1
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccch
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~ 132 (368)
..--+||+|+...+.+||.+.|..|=....+.+. +..-.-.+|-.|-|-|..+
T Consensus 59 qEa~qILnV~~~ln~eei~k~yehLFevNdkskG---GSFYLQSKVfRAkErld~E 111 (132)
T KOG3442|consen 59 QEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKG---GSFYLQSKVFRAKERLDEE 111 (132)
T ss_pred HHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccC---cceeehHHHHHHHHHHHHH
Confidence 3567899999999999999999999877555543 3322223444555555433
No 188
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=24.80 E-value=1.5e+02 Score=20.52 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647 98 YRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (368)
Q Consensus 98 yr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 141 (368)
.|.-.+.-||+. ...+..+.|.+.|..|++.++....+.+
T Consensus 15 ~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455556678884 3678889999999999987776655543
No 189
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=24.77 E-value=1.2e+02 Score=19.52 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=7.1
Q ss_pred eCCCCCCccEEEEee
Q 017647 241 ICSTCGGRGQVMRTD 255 (368)
Q Consensus 241 ~C~~C~G~G~~~~~~ 255 (368)
.|+.|+....+....
T Consensus 2 ~Cp~Cg~~~a~~~~~ 16 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQI 16 (39)
T ss_dssp --SSS-SSEEEEEEE
T ss_pred CCcCCCCCeEEEEEe
Confidence 477777766655433
No 190
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=22.98 E-value=41 Score=29.42 Aligned_cols=26 Identities=35% Similarity=0.751 Sum_probs=14.3
Q ss_pred eecccccCCccccCceeeeCCCCCCccEEE
Q 017647 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252 (368)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 252 (368)
..|..|.+.-.+ ..+||.|++.|..+
T Consensus 163 ilCtvCe~r~w~----g~~CPKCGr~G~pi 188 (200)
T PF12387_consen 163 ILCTVCEGREWK----GGNCPKCGRHGKPI 188 (200)
T ss_pred EEEeeeecCccC----CCCCCcccCCCCCe
Confidence 456666655432 23466666666543
No 191
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=22.26 E-value=1e+02 Score=21.60 Aligned_cols=8 Identities=38% Similarity=1.157 Sum_probs=5.2
Q ss_pred eeCCCCCC
Q 017647 266 SVCPSCGG 273 (368)
Q Consensus 266 ~~C~~C~G 273 (368)
..|..|+.
T Consensus 30 V~C~~Cga 37 (61)
T PF14354_consen 30 VECTDCGA 37 (61)
T ss_pred EEcCCCCC
Confidence 45777765
No 192
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=22.22 E-value=46 Score=30.94 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhcc-----chhhh
Q 017647 117 EKFKEISAAYEVLS-----DDKKR 135 (368)
Q Consensus 117 ~~f~~i~~Ay~~L~-----d~~~r 135 (368)
.+.++||||+|+|. ||.+|
T Consensus 128 RRLkKVNEAFE~LKRrT~~NPNQR 151 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRRTSSNPNQR 151 (284)
T ss_pred HHHHHHHHHHHHHHhhcCCCcccc
Confidence 56899999999976 55544
No 193
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=21.54 E-value=2.1e+02 Score=20.99 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 95 k~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++...++.
T Consensus 13 ~~~~r~~~~~~~p~~----~~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGL----TNNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCC----CHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 456677788889986 356788899999999998777654443
No 194
>smart00350 MCM minichromosome maintenance proteins.
Probab=21.25 E-value=2.9e+02 Score=28.50 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=8.4
Q ss_pred eeeeeeCCC--CCCcc
Q 017647 262 FSQVSVCPS--CGGEG 275 (368)
Q Consensus 262 ~~~~~~C~~--C~G~G 275 (368)
+..-..|+. |+..+
T Consensus 56 ~~~p~~C~~~~C~~~~ 71 (509)
T smart00350 56 ETEPTVCPPRECQSPT 71 (509)
T ss_pred ccCCCcCCCCcCCCCC
Confidence 333356776 77765
No 195
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=21.10 E-value=75 Score=21.21 Aligned_cols=7 Identities=43% Similarity=1.089 Sum_probs=3.2
Q ss_pred eCCCCCC
Q 017647 267 VCPSCGG 273 (368)
Q Consensus 267 ~C~~C~G 273 (368)
.|+.|+.
T Consensus 21 rC~~CG~ 27 (44)
T smart00659 21 RCRECGY 27 (44)
T ss_pred ECCCCCc
Confidence 4444444
No 196
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=20.89 E-value=75 Score=21.09 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=4.6
Q ss_pred eeCCCCCC
Q 017647 266 SVCPSCGG 273 (368)
Q Consensus 266 ~~C~~C~G 273 (368)
..|+.|+.
T Consensus 22 ~~Cp~CG~ 29 (46)
T PRK00398 22 VRCPYCGY 29 (46)
T ss_pred eECCCCCC
Confidence 45666654
No 197
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=20.74 E-value=2.1e+02 Score=24.58 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=13.9
Q ss_pred eEEEEEeCCCCcCCCEEEEc
Q 017647 295 KNIKVKVPPGVSTGSILRVV 314 (368)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~ 314 (368)
..++|.-+.+++.||.+.+.
T Consensus 49 ~~~~v~~~~~~~vGD~V~v~ 68 (154)
T PRK10862 49 HQLVVPSSQPLVPGQKVELG 68 (154)
T ss_pred eEEEecCCCCCCCCCEEEEe
Confidence 44666666778888877764
No 198
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.63 E-value=64 Score=20.46 Aligned_cols=7 Identities=43% Similarity=1.289 Sum_probs=3.8
Q ss_pred eeCCCCC
Q 017647 266 SVCPSCG 272 (368)
Q Consensus 266 ~~C~~C~ 272 (368)
..|+.|+
T Consensus 26 v~C~~C~ 32 (36)
T PF13717_consen 26 VRCSKCG 32 (36)
T ss_pred EECCCCC
Confidence 4566654
No 199
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.57 E-value=59 Score=35.22 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=28.2
Q ss_pred cceeecccccCCccc-cCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647 220 SHLETCEVCTGTGAK-MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (368)
Q Consensus 220 ~~~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (368)
.....|+.|+..=.- .......|..|+-+..+. ..|+.|++.
T Consensus 442 g~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p-------------~~Cp~Cgs~ 484 (730)
T COG1198 442 GYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIP-------------QSCPECGSE 484 (730)
T ss_pred CCcccCCCCCcceEEecCCCeeEeCCCCCCCCCC-------------CCCCCCCCC
Confidence 345679999876332 233477899997553221 689999998
No 200
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=20.55 E-value=62 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.801 Sum_probs=12.1
Q ss_pred eecccccCCccccCceeeeCCCC
Q 017647 223 ETCEVCTGTGAKMGSKMRICSTC 245 (368)
Q Consensus 223 ~~C~~C~G~G~~~~~~~~~C~~C 245 (368)
..|..|.+.|.........|..|
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C 58 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNC 58 (102)
T ss_pred EeccccCCCceEEECCEEEEecC
Confidence 45666655555444444455555
No 201
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.47 E-value=8.5 Score=36.22 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=24.8
Q ss_pred cceeecccccCCc---------cccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccE
Q 017647 220 SHLETCEVCTGTG---------AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 276 (368)
Q Consensus 220 ~~~~~C~~C~G~G---------~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~ 276 (368)
.+...|+.|.+.- ...|.+...|+.|...=..+ ...|.+|+-++.
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~V------------R~KC~nC~~t~~ 236 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYV------------RVKCSNCEQSKK 236 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHH------------HHHhccccccCC
Confidence 4556788887653 23344455666664322211 256778876654
No 202
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=20.47 E-value=51 Score=20.19 Aligned_cols=6 Identities=83% Similarity=2.261 Sum_probs=3.1
Q ss_pred eCCCCC
Q 017647 267 VCPSCG 272 (368)
Q Consensus 267 ~C~~C~ 272 (368)
.|+.|.
T Consensus 21 vCp~C~ 26 (30)
T PF08274_consen 21 VCPECG 26 (30)
T ss_dssp EETTTT
T ss_pred eCCccc
Confidence 455554
No 203
>COG2879 Uncharacterized small protein [Function unknown]
Probab=20.46 E-value=1.7e+02 Score=21.21 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHH
Q 017647 97 AYRKLARQYHPDVNKEPGATEKFKEIS 123 (368)
Q Consensus 97 ayr~l~~~~hPD~~~~~~~~~~f~~i~ 123 (368)
-|-.-+++.|||+.+ -.-.|.|++-.
T Consensus 27 nYVehmr~~hPd~p~-mT~~EFfrec~ 52 (65)
T COG2879 27 NYVEHMRKKHPDKPP-MTYEEFFRECQ 52 (65)
T ss_pred HHHHHHHHhCcCCCc-ccHHHHHHHHH
Confidence 477778899999864 23455555443
Done!