Query 017647
Match_columns 368
No_of_seqs 350 out of 2750
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 1.1E-48 3.9E-53 375.5 12.5 223 76-368 27-254 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 8E-42 2.7E-46 316.5 16.5 174 192-368 8-184 (248)
3 3agx_A DNAJ homolog subfamily 99.9 9.6E-27 3.3E-31 205.4 11.7 114 195-368 2-115 (181)
4 2q2g_A HSP40 protein, heat sho 99.9 2.1E-25 7.4E-30 196.7 12.4 114 194-368 2-115 (180)
5 1c3g_A Heat shock protein 40; 99.9 8.5E-24 2.9E-28 184.8 10.9 109 196-368 1-109 (170)
6 1bq0_A DNAJ, HSP40; chaperone, 99.9 2.9E-24 9.8E-29 172.5 5.6 97 75-172 1-100 (103)
7 1hdj_A Human HSP40, HDJ-1; mol 99.9 5.1E-23 1.8E-27 156.4 7.4 74 75-148 1-74 (77)
8 2cug_A Mkiaa0962 protein; DNAJ 99.9 4.6E-22 1.6E-26 155.0 7.9 75 71-145 11-85 (88)
9 2ctr_A DNAJ homolog subfamily 99.8 5.4E-22 1.8E-26 154.6 6.1 74 75-148 5-78 (88)
10 2ctp_A DNAJ homolog subfamily 99.8 8.9E-22 3E-26 149.9 6.0 70 76-145 6-75 (78)
11 2dn9_A DNAJ homolog subfamily 99.8 1.7E-21 5.8E-26 148.7 7.2 71 75-145 5-76 (79)
12 2och_A Hypothetical protein DN 99.8 1.7E-21 5.7E-26 146.5 6.7 71 72-144 3-73 (73)
13 2ej7_A HCG3 gene; HCG3 protein 99.8 1.7E-21 5.8E-26 149.8 6.5 71 76-146 8-80 (82)
14 2dmx_A DNAJ homolog subfamily 99.8 2.9E-21 9.9E-26 151.8 6.9 74 76-149 8-83 (92)
15 2o37_A Protein SIS1; HSP40, J- 99.8 1.8E-21 6.3E-26 152.9 5.4 75 72-148 3-77 (92)
16 2ctq_A DNAJ homolog subfamily 99.8 4E-21 1.4E-25 156.4 7.5 74 74-147 17-91 (112)
17 2ctt_A DNAJ homolog subfamily 99.8 9.1E-22 3.1E-26 158.1 2.5 103 195-301 1-103 (104)
18 2ctw_A DNAJ homolog subfamily 99.8 5.8E-21 2E-25 154.7 6.2 76 72-147 12-88 (109)
19 2lgw_A DNAJ homolog subfamily 99.8 5.7E-21 2E-25 151.9 6.0 72 77-148 2-75 (99)
20 2yua_A Williams-beuren syndrom 99.8 2.4E-20 8E-25 148.5 7.2 68 74-141 14-82 (99)
21 1wjz_A 1700030A21RIK protein; 99.8 2.3E-20 7.8E-25 147.2 4.7 69 74-142 13-88 (94)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.1E-19 3.6E-24 147.3 4.7 73 72-144 10-87 (109)
23 3apq_A DNAJ homolog subfamily 99.8 1.6E-19 5.3E-24 162.4 6.1 89 77-170 2-91 (210)
24 2ys8_A RAB-related GTP-binding 99.8 2.8E-19 9.4E-24 139.8 5.7 64 74-137 24-87 (90)
25 1faf_A Large T antigen; J doma 99.7 1.5E-18 5.3E-23 132.1 4.6 66 77-146 11-78 (79)
26 2l6l_A DNAJ homolog subfamily 99.7 3.1E-18 1E-22 147.4 6.3 69 75-143 8-83 (155)
27 1gh6_A Large T antigen; tumor 99.7 5.6E-19 1.9E-23 143.6 0.8 65 76-143 7-73 (114)
28 3bvo_A CO-chaperone protein HS 99.7 1.4E-17 4.8E-22 149.3 8.4 65 76-140 42-114 (207)
29 2pf4_E Small T antigen; PP2A, 99.7 1.4E-18 4.7E-23 150.8 0.9 65 76-143 10-76 (174)
30 1iur_A KIAA0730 protein; DNAJ 99.7 9.5E-18 3.3E-22 130.1 2.8 63 75-137 14-78 (88)
31 1n4c_A Auxilin; four helix bun 99.7 1.7E-17 5.7E-22 144.9 4.5 67 72-138 112-182 (182)
32 3hho_A CO-chaperone protein HS 99.7 5.7E-17 1.9E-21 141.8 5.6 66 76-141 3-76 (174)
33 2qwo_B Putative tyrosine-prote 99.6 4.1E-17 1.4E-21 127.0 3.3 60 72-131 28-91 (92)
34 3apo_A DNAJ homolog subfamily 99.6 1.4E-17 4.7E-22 177.2 0.7 78 72-149 16-94 (780)
35 1fpo_A HSC20, chaperone protei 99.6 1.2E-16 4.1E-21 139.3 4.9 65 78-142 2-74 (171)
36 3ag7_A Putative uncharacterize 99.6 7.1E-17 2.4E-21 129.6 2.0 61 72-133 36-104 (106)
37 2guz_A Mitochondrial import in 99.6 2E-16 6.7E-21 117.9 3.6 56 77-135 14-70 (71)
38 3uo3_A J-type CO-chaperone JAC 99.6 4.6E-16 1.6E-20 136.7 3.3 66 75-142 9-81 (181)
39 1nlt_A Protein YDJ1, mitochond 99.5 3.3E-15 1.1E-19 137.9 5.7 118 222-349 54-247 (248)
40 1exk_A DNAJ protein; extended 99.5 3E-14 1E-18 108.3 5.9 78 212-293 1-78 (79)
41 3i38_A Putative chaperone DNAJ 99.3 1.7E-12 5.6E-17 104.7 4.5 83 193-350 9-91 (109)
42 1xao_A YDJ1, mitochondrial pro 99.2 9.2E-12 3.1E-16 102.2 6.6 86 193-350 4-93 (121)
43 2q2g_A HSP40 protein, heat sho 99.0 4E-10 1.4E-14 98.8 6.8 84 193-348 90-174 (180)
44 3agx_A DNAJ homolog subfamily 99.0 4.4E-10 1.5E-14 98.7 6.6 84 193-348 90-174 (181)
45 2y4t_A DNAJ homolog subfamily 98.9 4.6E-10 1.6E-14 109.2 5.1 64 77-140 382-449 (450)
46 1c3g_A Heat shock protein 40; 98.9 4.3E-10 1.5E-14 97.7 4.4 84 193-348 84-168 (170)
47 2guz_B Mitochondrial import in 98.9 1.6E-09 5.4E-14 78.5 4.3 52 78-132 5-59 (65)
48 3lz8_A Putative chaperone DNAJ 98.8 1.9E-09 6.5E-14 103.1 4.5 84 193-351 229-312 (329)
49 2ctt_A DNAJ homolog subfamily 97.8 1.1E-05 3.6E-10 64.0 3.0 50 222-283 45-99 (104)
50 1exk_A DNAJ protein; extended 97.7 1.3E-05 4.5E-10 60.0 2.7 47 221-279 27-78 (79)
51 3pmq_A Decaheme cytochrome C M 97.6 3.2E-06 1.1E-10 87.2 -2.6 78 199-276 168-257 (669)
52 2bx9_A Anti-trap, AT, tryptoph 97.3 2.8E-05 9.6E-10 53.6 -0.5 31 222-255 9-39 (53)
53 3lcz_A YCZA, inhibitor of trap 97.3 6.3E-05 2.2E-09 51.9 1.1 28 266-293 10-37 (53)
54 3lcz_A YCZA, inhibitor of trap 97.1 0.00021 7.2E-09 49.2 2.3 28 240-279 10-37 (53)
55 2bx9_A Anti-trap, AT, tryptoph 96.9 0.00036 1.2E-08 48.0 2.3 29 239-279 9-37 (53)
56 2pzi_A Probable serine/threoni 90.2 0.12 4.3E-06 53.4 2.7 48 74-128 626-675 (681)
57 1ltl_A DNA replication initiat 64.5 11 0.00037 34.3 6.1 35 240-278 135-169 (279)
58 1uzc_A Hypothetical protein FL 47.4 19 0.00064 25.7 3.6 53 88-142 11-66 (71)
59 2cqn_A Formin-binding protein 45.0 22 0.00076 25.8 3.8 54 89-143 6-63 (77)
60 2b7e_A PRE-mRNA processing pro 44.5 24 0.00082 24.3 3.6 49 92-142 3-56 (59)
61 2qkd_A Zinc finger protein ZPR 40.3 26 0.0009 33.7 4.5 77 239-315 12-112 (404)
62 3nyb_B Protein AIR2; polya RNA 35.5 16 0.00056 26.9 1.8 54 221-278 4-59 (83)
63 2qkd_A Zinc finger protein ZPR 34.7 42 0.0014 32.3 4.9 19 297-315 302-320 (404)
64 2apo_B Ribosome biogenesis pro 31.5 24 0.00084 24.3 2.0 9 266-274 19-27 (60)
65 2aus_D NOP10, ribosome biogene 30.2 34 0.0011 23.6 2.5 10 266-275 18-27 (60)
66 1ltl_A DNA replication initiat 29.0 64 0.0022 29.1 5.0 70 265-335 134-223 (279)
67 3zxf_A Galectin-7; sugar bindi 28.6 91 0.0031 24.8 5.4 44 296-339 7-59 (138)
68 2vl6_A SSO MCM N-TER, minichro 27.9 2.6E+02 0.0089 24.6 9.0 85 239-335 141-236 (268)
69 4a3n_A Transcription factor SO 27.8 77 0.0026 21.6 4.3 42 95-140 14-55 (71)
70 2vl6_A SSO MCM N-TER, minichro 26.4 80 0.0027 28.1 5.2 21 295-315 211-235 (268)
71 2d7l_A WD repeat and HMG-box D 25.6 95 0.0032 22.3 4.5 44 95-141 17-60 (81)
72 1i11_A Transcription factor SO 23.7 1E+02 0.0036 21.7 4.5 41 96-140 17-57 (81)
73 3i8t_A Galectin-4; S-type lect 22.8 1.5E+02 0.0051 24.4 5.8 44 296-339 30-82 (164)
74 3f27_D Transcription factor SO 22.4 1.2E+02 0.0041 21.4 4.6 42 95-140 18-59 (83)
75 2cs1_A PMS1 protein homolog 1; 22.0 1.2E+02 0.0041 22.1 4.6 41 96-140 20-60 (92)
76 2r0h_A CGL3 lectin; galectin-r 22.0 2E+02 0.0068 23.8 6.3 22 297-318 9-30 (164)
77 2crj_A SWI/SNF-related matrix- 21.9 1.3E+02 0.0045 21.9 4.8 41 96-140 20-60 (92)
78 2dod_A Transcription elongatio 21.5 76 0.0026 23.2 3.2 53 88-142 13-67 (82)
79 3nv1_A Galectin-9, galectin 9 21.4 1.5E+02 0.005 23.6 5.4 42 297-338 10-56 (138)
80 1wgf_A Upstream binding factor 21.1 1.1E+02 0.0037 22.3 4.1 41 96-140 33-73 (90)
81 1qqr_A Streptokinase domain B; 20.9 44 0.0015 26.9 1.9 31 79-109 34-64 (138)
82 3nm9_A HMG-D, high mobility gr 20.7 1.4E+02 0.0047 20.6 4.5 38 95-139 15-52 (73)
83 2wkk_A Galectin-2; sugar-bindi 20.7 1.3E+02 0.0044 24.4 4.9 42 297-338 9-57 (150)
84 2yro_A Galectin-8; GAL-BIND le 20.6 1.3E+02 0.0043 24.6 4.8 43 296-338 18-67 (155)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=1.1e-48 Score=375.50 Aligned_cols=223 Identities=33% Similarity=0.572 Sum_probs=100.0
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCC--
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-- 153 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~-- 153 (368)
..|||+||||+++|+.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+|+.+....+.+++
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~ 106 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQ 106 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccc
Confidence 479999999999999999999999999999999998888999999999999999999999999999544221111100
Q ss_pred --CCCC-cCCCccccccccCCCCCCCCCCCCCCCCCccCcccccCcceEEEEeeecccccccceeeEeecceeecccccC
Q 017647 154 --SSAY-TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (368)
Q Consensus 154 --~~~~-~~~~~d~F~~fFg~~~g~~~g~~~~~~~~~~~~~~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G 230 (368)
.+.| ..++.|+|++|||+. +. +. ......++.|++++|.|+|+|+|.|+++++.+.+.+.|
T Consensus 107 ~~~~~f~~~~f~diF~~~Fg~~--g~--------~~-~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----- 170 (329)
T 3lz8_A 107 THEQSYSQQDFDDIFSSMFGQQ--AH--------QR-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----- 170 (329)
T ss_dssp -----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC-----
T ss_pred cccCCcCCCchhhhhHhhhcCc--CC--------CC-CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec-----
Confidence 0112 123457788777631 00 00 01124578999999999999999999999998764421
Q ss_pred CccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCE
Q 017647 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (368)
Q Consensus 231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~ 310 (368)
|.|.+. +...++++|+||||+++|++
T Consensus 171 ----------------g~G~v~--------------------------------------~~~~~~l~V~IP~Gv~~G~~ 196 (329)
T 3lz8_A 171 ----------------VFGMIE--------------------------------------SETPKTLNVKIPAGVVDGQR 196 (329)
T ss_dssp ----------------SCC-CC--------------------------------------EEEEEEEEEEECTTCCTTCE
T ss_pred ----------------CCeEEE--------------------------------------EecceEEEEeCCCCCCCCCE
Confidence 122211 12246899999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccCHhhhccCCeEEeC
Q 017647 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 311 i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Isl~eALlG~~v~V~ 368 (368)
|+|+|+|++++.++.+|||||+|+|++|+.|+|+|+||+++++|+|+|||||++|+|+
T Consensus 197 Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~Vp 254 (329)
T 3lz8_A 197 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVP 254 (329)
T ss_dssp EEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEEC
T ss_pred EEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEE
Confidence 9999999998777889999999999999999999999999999999999999999986
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=8e-42 Score=316.46 Aligned_cols=174 Identities=28% Similarity=0.557 Sum_probs=163.2
Q ss_pred cccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcce-eeeeeCCC
Q 017647 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLF-SQVSVCPS 270 (368)
Q Consensus 192 ~~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~ 270 (368)
..++.|++++|.|+|||+|+|+++++.+.+.+.|+.|+|+|+..+. ..+|+.|+|+|.++..+++++ ++ +.+.+|+.
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 3578999999999999999999999999999999999999999888 499999999999988888777 44 45589999
Q ss_pred CCCccEEE--ceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCce
Q 017647 271 CGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (368)
Q Consensus 271 C~G~G~~~--~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL 348 (368)
|+|.|+++ .+.|..|+|.|.+.+.++++|+||+|+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999 8999999999999999999999999999999999999999975 56899999999999999999999999
Q ss_pred EEEeccCHhhhccCCeEEeC
Q 017647 349 FSTISISYLDAIMGTVVKVT 368 (368)
Q Consensus 349 ~~~~~Isl~eALlG~~v~V~ 368 (368)
|++++|+|+|||||++++|+
T Consensus 165 ~~~~~Isl~eAllG~~i~v~ 184 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFALE 184 (248)
T ss_dssp EEEEEEEHHHHHHCBCCEEE
T ss_pred EEEEEeCHHHHhcCCEEEEe
Confidence 99999999999999999885
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.94 E-value=9.6e-27 Score=205.41 Aligned_cols=114 Identities=24% Similarity=0.328 Sum_probs=96.5
Q ss_pred CcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (368)
Q Consensus 195 g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (368)
++|++++|.|||||+|+|+++++.+.+ .|+.|+|.|
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~-------------------~c~~c~G~g------------------------- 37 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH-------------------KRLNPDGKS------------------------- 37 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-------------------EEECTTSSC-------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-------------------ccCCCCCce-------------------------
Confidence 468899999999999999999987642 233333333
Q ss_pred cEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEecc
Q 017647 275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 354 (368)
Q Consensus 275 G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I 354 (368)
.+.+.++++|+||+|+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 38 ---------------~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 38 ---------------IRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp ---------------EEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred ---------------EEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 33557899999999999999999999999977 67899999999999999999999999999999
Q ss_pred CHhhhccCCeEEeC
Q 017647 355 SYLDAIMGTVVKVT 368 (368)
Q Consensus 355 sl~eALlG~~v~V~ 368 (368)
+|+|||||++++|+
T Consensus 102 sl~eAllG~~i~v~ 115 (181)
T 3agx_A 102 SLREALCGCTVNVP 115 (181)
T ss_dssp EHHHHHHCEEEEEE
T ss_pred CHHHHhCCCEEEeE
Confidence 99999999999885
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.92 E-value=2.1e-25 Score=196.66 Aligned_cols=114 Identities=24% Similarity=0.407 Sum_probs=102.0
Q ss_pred cCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCC
Q 017647 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGG 273 (368)
Q Consensus 194 ~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 273 (368)
++.|++++|.|||||+|+|+++++.+.+.+.|..
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 3679999999999999999999999988777631
Q ss_pred ccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEec
Q 017647 274 EGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS 353 (368)
Q Consensus 274 ~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 353 (368)
+.+.+.++++|+||+|+++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++
T Consensus 36 ---------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~ 100 (180)
T 2q2g_A 36 ---------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVT 100 (180)
T ss_dssp ---------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred ---------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEE
Confidence 22345688999999999999999999999995558889999999999999999999999999999
Q ss_pred cCHhhhccCCeEEeC
Q 017647 354 ISYLDAIMGTVVKVT 368 (368)
Q Consensus 354 Isl~eALlG~~v~V~ 368 (368)
|+|+|||||++++|+
T Consensus 101 Isl~eAllG~~i~v~ 115 (180)
T 2q2g_A 101 IPLVRALTGFTCPVT 115 (180)
T ss_dssp EEHHHHHHCEEEEEE
T ss_pred cCHHHHhCCCEEEee
Confidence 999999999999885
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.90 E-value=8.5e-24 Score=184.77 Aligned_cols=109 Identities=22% Similarity=0.465 Sum_probs=96.9
Q ss_pred cceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCcc
Q 017647 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (368)
Q Consensus 196 ~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 275 (368)
+|++++|.|||+|+|+|+++++.+.+.. + .|
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~------~-----------------~G-------------------------- 31 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG------P-----------------HG-------------------------- 31 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE------T-----------------TT--------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec------C-----------------CC--------------------------
Confidence 3789999999999999999999986530 0 11
Q ss_pred EEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEEeccC
Q 017647 276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISIS 355 (368)
Q Consensus 276 ~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~~~Is 355 (368)
.+ +.++++|+||+|+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus 32 --------------~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 96 (170)
T 1c3g_A 32 --------------AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96 (170)
T ss_dssp --------------EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred --------------cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence 12 367899999999999999999999997777888999999999999999999999999999999
Q ss_pred HhhhccCCeEEeC
Q 017647 356 YLDAIMGTVVKVT 368 (368)
Q Consensus 356 l~eALlG~~v~V~ 368 (368)
|+|||||++++|+
T Consensus 97 l~eAllG~~~~v~ 109 (170)
T 1c3g_A 97 FKESLLGFSKTIQ 109 (170)
T ss_dssp HHHHHHCEEEEEE
T ss_pred HHHHhCCCeEEee
Confidence 9999999999885
No 6
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.89 E-value=2.9e-24 Score=172.52 Aligned_cols=97 Identities=48% Similarity=0.796 Sum_probs=70.2
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCC
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG 153 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~ 153 (368)
|..|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|+++++.+..++
T Consensus 1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~ 80 (103)
T 1bq0_A 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG 80 (103)
T ss_dssp CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC---
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCC
Confidence 45799999999999999999999999999999999874 67889999999999999999999999999999887542211
Q ss_pred CCCCc--CCCccccccccCCC
Q 017647 154 SSAYT--TNPFDLFETFFGPS 172 (368)
Q Consensus 154 ~~~~~--~~~~d~F~~fFg~~ 172 (368)
+.+. .++.++|+.+|+..
T Consensus 81 -~~~~~~~~~~~~f~~~f~~~ 100 (103)
T 1bq0_A 81 -GGFGGGADFSDIFGDVFGDI 100 (103)
T ss_dssp ---------------------
T ss_pred -CCCCCCCCHHHHHHHHHHhh
Confidence 1111 13456677777643
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=5.1e-23 Score=156.41 Aligned_cols=74 Identities=61% Similarity=1.030 Sum_probs=69.8
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~ 148 (368)
|..|||+||||+++|+.+|||+|||+|++++|||++..+.+.+.|++|++||++|+||.+|+.||++|.++++.
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 46799999999999999999999999999999999988889999999999999999999999999999887653
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=4.6e-22 Score=155.05 Aligned_cols=75 Identities=51% Similarity=0.862 Sum_probs=69.7
Q ss_pred cccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647 71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (368)
Q Consensus 71 ~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g 145 (368)
.......|||+||||+++|+.+|||+|||+|++++|||++..+.+.++|++|++||++|+||.+|+.||++|+++
T Consensus 11 ~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred hhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 355567899999999999999999999999999999999988889999999999999999999999999998754
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.4e-22 Score=154.65 Aligned_cols=74 Identities=55% Similarity=0.907 Sum_probs=69.3
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~ 148 (368)
...|||+||||+++|+.+|||+|||+|++++|||++..+.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 35689999999999999999999999999999999988888999999999999999999999999999877654
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.9e-22 Score=149.91 Aligned_cols=70 Identities=56% Similarity=0.962 Sum_probs=66.7
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g 145 (368)
..|||+||||+++|+.+|||+|||+|++++|||++..+++.++|++|++||++|+||.+|+.||++|+++
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4699999999999999999999999999999999988889999999999999999999999999998765
No 11
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=148.71 Aligned_cols=71 Identities=61% Similarity=1.022 Sum_probs=66.2
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccC
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG 145 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g 145 (368)
...|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|.++
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 35699999999999999999999999999999999874 678999999999999999999999999998754
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.84 E-value=1.7e-21 Score=146.48 Aligned_cols=71 Identities=54% Similarity=0.862 Sum_probs=62.4
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccccc
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 144 (368)
.|....|||+||||+++|+.+|||+|||+|++++|||+++. +.++|++|++||++|+||.+|+.||++|++
T Consensus 3 ~m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 3 AMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp ---CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 34567899999999999999999999999999999999853 468999999999999999999999999864
No 13
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=149.80 Aligned_cols=71 Identities=54% Similarity=0.870 Sum_probs=65.8
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccchhhhhhhccccccCc
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~ 146 (368)
..|||+||||+++|+.+|||+|||+|++++|||+++.. .+.++|++|++||++|+||.+|+.||++|++++
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 46999999999999999999999999999999998753 678899999999999999999999999997664
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=151.77 Aligned_cols=74 Identities=51% Similarity=0.783 Sum_probs=68.0
Q ss_pred ccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCcccc
Q 017647 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST 149 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~ 149 (368)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|.+++..+
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 83 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG 83 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 4689999999999999999999999999999999875 3678999999999999999999999999998877653
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-21 Score=152.85 Aligned_cols=75 Identities=49% Similarity=0.798 Sum_probs=68.0
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~ 148 (368)
.+.+..|||+||||+++|+.+|||+|||+|++++|||+++ ...++|++|++||++|+||.+|+.||++|+++++.
T Consensus 3 ~m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 3 AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp -CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred ccccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 4556789999999999999999999999999999999985 34679999999999999999999999999887764
No 16
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4e-21 Score=156.40 Aligned_cols=74 Identities=31% Similarity=0.562 Sum_probs=68.7
Q ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~ 147 (368)
....|||+||||+++|+.+|||+|||+|++++|||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 44689999999999999999999999999999999997 478899999999999999999999999999987654
No 17
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.1e-22 Score=158.13 Aligned_cols=103 Identities=34% Similarity=0.697 Sum_probs=93.5
Q ss_pred CcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCc
Q 017647 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (368)
Q Consensus 195 g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 274 (368)
|.|++++|.|+|||||+|.++++.+.+.+.|+.|+|+|...+....+|+.|+|+|++...+ |+|+++.+|+.|+|.
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence 3577889999999999999999999999999999999999988889999999999876543 667888999999999
Q ss_pred cEEEceeeeeeccceEEEEeeEEEEEe
Q 017647 275 GEVISEYCRKCSGEGRIRLKKNIKVKV 301 (368)
Q Consensus 275 G~~~~~~C~~C~g~g~v~~~~~l~V~I 301 (368)
|.+++++|..|+|.|.+.+.+.|+|+|
T Consensus 77 G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 999999999999999998888777764
No 18
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=5.8e-21 Score=154.67 Aligned_cols=76 Identities=45% Similarity=0.801 Sum_probs=69.7
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccchhhhhhhccccccCcc
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~ 147 (368)
......|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|..++.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 44567899999999999999999999999999999999874 67889999999999999999999999999987654
No 19
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-21 Score=151.91 Aligned_cols=72 Identities=53% Similarity=0.890 Sum_probs=64.2
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhhhccccccCccc
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~ 148 (368)
.|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 589999999999999999999999999999999875 347899999999999999999999999999887653
No 20
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=148.52 Aligned_cols=68 Identities=41% Similarity=0.613 Sum_probs=63.7
Q ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 141 (368)
....|||+||||+++|+.+|||+|||+|+++||||++. .+.+.++|++|++||++|+||.+|+.||++
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 45679999999999999999999999999999999986 467899999999999999999999999984
No 21
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.80 E-value=2.3e-20 Score=147.18 Aligned_cols=69 Identities=32% Similarity=0.570 Sum_probs=63.5
Q ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-------PGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 142 (368)
....|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||.+.
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 446799999999999999999999999999999999863 457899999999999999999999999875
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.77 E-value=1.1e-19 Score=147.29 Aligned_cols=73 Identities=37% Similarity=0.619 Sum_probs=66.5
Q ss_pred ccccccccchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHhhccchhhhhhhcccccc
Q 017647 72 VVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a-~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 144 (368)
......|||+||||+++| +.+|||+|||+|++++|||++.. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 344578999999999999 99999999999999999999875 56789999999999999999999999998753
No 23
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=1.6e-19 Score=162.43 Aligned_cols=89 Identities=43% Similarity=0.790 Sum_probs=74.9
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccccCCCCC
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS 155 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~~~~~~~ 155 (368)
.|||+||||+++|+.+|||+|||+|++++|||+++ .+.+.++|++|++||++|+||.+|+.||++|++++....++
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~--- 78 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGG--- 78 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTCSC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccccccc---
Confidence 58999999999999999999999999999999996 57789999999999999999999999999998887654321
Q ss_pred CCcCCCccccccccC
Q 017647 156 AYTTNPFDLFETFFG 170 (368)
Q Consensus 156 ~~~~~~~d~F~~fFg 170 (368)
....+.+|...|+
T Consensus 79 --~~~~~~~~~~~fg 91 (210)
T 3apq_A 79 --QYESWSYYRYDFG 91 (210)
T ss_dssp --CCCCHHHHHHSSS
T ss_pred --ccccccccccccc
Confidence 1234555555543
No 24
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=139.77 Aligned_cols=64 Identities=38% Similarity=0.504 Sum_probs=60.5
Q ss_pred ccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhh
Q 017647 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~ 137 (368)
....|||+||||+++|+.+|||+|||+|+++||||+++.+++.++|++|++||++|+|+.+|+.
T Consensus 24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 3468999999999999999999999999999999999888999999999999999999999874
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.73 E-value=1.5e-18 Score=132.09 Aligned_cols=66 Identities=15% Similarity=0.300 Sum_probs=59.7
Q ss_pred cccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccccCc
Q 017647 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV 146 (368)
Q Consensus 77 ~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~ 146 (368)
.++|+||||+++ ++.+|||+|||+|++++|||++. +.++|++|++||++|+|+.+|.. |.||.+++
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~ 78 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTGF 78 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence 589999999999 99999999999999999999973 46899999999999999999998 56776553
No 26
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=147.36 Aligned_cols=69 Identities=32% Similarity=0.549 Sum_probs=62.7
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHhhccchhhhhhhccccc
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-------ATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~-------~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 143 (368)
...|||+||||+++|+.+|||+|||+|++++|||++.... +.++|++|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3569999999999999999999999999999999987542 56899999999999999999999998653
No 27
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.72 E-value=5.6e-19 Score=143.59 Aligned_cols=65 Identities=31% Similarity=0.510 Sum_probs=60.5
Q ss_pred ccccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccc
Q 017647 76 SGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 143 (368)
..|||+||||+++|+. +|||+|||+|++++|||+++. .++|++|++||++|+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4689999999999999 999999999999999999864 5789999999999999999999999874
No 28
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=149.33 Aligned_cols=65 Identities=22% Similarity=0.425 Sum_probs=58.9
Q ss_pred ccccchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 76 ~~d~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
..|||+||||+++ ++.++||+|||+|+++||||+++... +.++|++|++||++|+||.+|+.||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 5799999999986 79999999999999999999987432 45789999999999999999999996
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.70 E-value=1.4e-18 Score=150.81 Aligned_cols=65 Identities=29% Similarity=0.453 Sum_probs=58.1
Q ss_pred ccccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccccc
Q 017647 76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE 143 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 143 (368)
..|||+||||+++|+ .+|||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||+||.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 468999999999998 6999999999999999999854 4789999999999999999999999985
No 30
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.68 E-value=9.5e-18 Score=130.11 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=57.0
Q ss_pred cccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccchhhhhh
Q 017647 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAM 137 (368)
Q Consensus 75 ~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~ 137 (368)
...++|+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+|...|..
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44689999999999999999999999999999999875 3478999999999999999887743
No 31
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.67 E-value=1.7e-17 Score=144.91 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=60.7
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccchhhhhhh
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY 138 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~----~~~~f~~i~~Ay~~L~d~~~r~~y 138 (368)
+.|...|||+||||+++|+.+|||+|||+|+++||||+++... +.++|++|++||++|+|+.+|+.|
T Consensus 112 vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 112 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp GSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HhcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3344579999999999999999999999999999999987543 788999999999999999999987
No 32
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.66 E-value=5.7e-17 Score=141.82 Aligned_cols=66 Identities=27% Similarity=0.526 Sum_probs=60.0
Q ss_pred ccccchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhccc
Q 017647 76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQY 141 (368)
Q Consensus 76 ~~d~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 141 (368)
..|||+||||+++++ .++||+|||+|+++||||+++... +.++|+.|++||++|+||.+|+.||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 468999999999988 999999999999999999987543 568999999999999999999999974
No 33
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.65 E-value=4.1e-17 Score=127.02 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=53.2
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccc
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSD 131 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----~~~~~f~~i~~Ay~~L~d 131 (368)
+++...++|++|||++.|+.+|||+|||++|++||||+++.. .++++|++|++||++|.+
T Consensus 28 ~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 28 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp TSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 445446899999999999999999999999999999998753 278899999999999975
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.65 E-value=1.4e-17 Score=177.22 Aligned_cols=78 Identities=44% Similarity=0.749 Sum_probs=40.9
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccchhhhhhhccccccCcccc
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST 149 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~g~~~~ 149 (368)
......|||+||||+++|+.+|||+|||+|+++||||+++ .+.+.++|++|++||++|+||.+|+.||+||+++++..
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 4456789999999999999999999999999999999985 46788999999999999999999999999999887654
No 35
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.63 E-value=1.2e-16 Score=139.29 Aligned_cols=65 Identities=28% Similarity=0.455 Sum_probs=59.6
Q ss_pred ccchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647 78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (368)
Q Consensus 78 d~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 142 (368)
|||++|||++++ +.++||+|||+|+++||||+++... +.++|+.|++||++|+||.+|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 799999999999 9999999999999999999987532 4578999999999999999999999863
No 36
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.62 E-value=7.1e-17 Score=129.56 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=54.1
Q ss_pred ccccccccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHhhccchh
Q 017647 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--------GATEKFKEISAAYEVLSDDK 133 (368)
Q Consensus 72 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 133 (368)
..+...|||+|||++. |+.+|||+|||+|+++||||+++.+ .+.++|++|++||++|+|+.
T Consensus 36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 5566789999999996 9999999999999999999998632 35889999999999999975
No 37
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2e-16 Score=117.94 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=51.6
Q ss_pred cccchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhh
Q 017647 77 GDYYATLGVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135 (368)
Q Consensus 77 ~d~y~iLgv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r 135 (368)
.++|+||||++ +++.+|||+|||+|++++|||++ ++.++|++|++||++|+|+..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhc
Confidence 58999999999 79999999999999999999996 4567999999999999998765
No 38
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.58 E-value=4.6e-16 Score=136.66 Aligned_cols=66 Identities=24% Similarity=0.477 Sum_probs=59.4
Q ss_pred cccccchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcccc
Q 017647 75 ASGDYYATL------GVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (368)
Q Consensus 75 ~~~d~y~iL------gv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~g 142 (368)
...|||+|| |+++ +|+.++||+|||+|++++|||+++. +.++|++|++||++|+||.+|+.||...
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 346999999 4665 9999999999999999999999865 7788999999999999999999999843
No 39
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.54 E-value=3.3e-15 Score=137.86 Aligned_cols=118 Identities=21% Similarity=0.449 Sum_probs=82.5
Q ss_pred eeecccccCCccccC---------ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE-
Q 017647 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI- 291 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v- 291 (368)
...|+.|+|+|.... ....+|+.|+|.|+++.. ..+|+.|+|.|.+.+..-..++.+..+
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 123 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP----------KDRCKSCNGKKVENERKILEVHVEPGMK 123 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT----------TSBCSSSTTSCEEEEEEEEEEEECTTCC
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc----------CCCCcccCCCceEeeeEEEEEEECCCcc
Confidence 378999999996421 135689999999987621 178999999998876544333222111
Q ss_pred -------------------------------------------------------------EEee-EEEEEeCCC--CcC
Q 017647 292 -------------------------------------------------------------RLKK-NIKVKVPPG--VST 307 (368)
Q Consensus 292 -------------------------------------------------------------~~~~-~l~V~Ip~G--~~~ 307 (368)
+.++ .++|+||+| +++
T Consensus 124 ~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~ 203 (248)
T 1nlt_A 124 DGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP 203 (248)
T ss_dssp TTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST
T ss_pred CCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC
Confidence 2334 699999999 999
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEEEeCCC--cccccCceE
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF 349 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~--f~r~g~dL~ 349 (368)
|++++|+|+|++..++...|||||+|+|..|.. ++.++.+|+
T Consensus 204 g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l 247 (248)
T 1nlt_A 204 GMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL 247 (248)
T ss_dssp TCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred CeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence 999999999999764435799999999999988 887776654
No 40
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.48 E-value=3e-14 Score=108.27 Aligned_cols=78 Identities=44% Similarity=0.981 Sum_probs=69.0
Q ss_pred cceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeeeeeccceEE
Q 017647 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 291 (368)
Q Consensus 212 G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~v 291 (368)
|.+++|.+.+.+.|+.|+|+|...+....+|+.|+|+|.++..+ |+|+...+|+.|+|.|.++++.|..|+|.|.+
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 56778889999999999999998777778999999999987643 77877789999999999999999999999987
Q ss_pred EE
Q 017647 292 RL 293 (368)
Q Consensus 292 ~~ 293 (368)
.+
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 53
No 41
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=1.7e-12 Score=104.68 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=70.2
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
+.|.|+.+++.|+|.||+.|+++++..-
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl---------------------------------------------------- 36 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL---------------------------------------------------- 36 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence 4688999999999999999988776521
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEE
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~ 350 (368)
++.++|+||+|+++|++++|+|+|++. .+ .+|||||+|+|..|..+..++.+++.
T Consensus 37 ---------------------dG~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~ 91 (109)
T 3i38_A 37 ---------------------KESILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELWQ 91 (109)
T ss_dssp ---------------------SSCEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHHH
T ss_pred ---------------------CCCEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHHH
Confidence 224789999999999999999999997 34 78999999999999988877766554
No 42
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.24 E-value=9.2e-12 Score=102.24 Aligned_cols=86 Identities=22% Similarity=0.384 Sum_probs=67.6
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
++|.|+.+++.|+|.||+.|.++++..-
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 31 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV---------------------------------------------------- 31 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence 4588999999999999999998776521
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCC--CcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCC--cccccCce
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDL 348 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~--f~r~g~dL 348 (368)
+.+.++|+||+| +++|++++|+|+|++..++..+|||||+|+|..|.. ++.++.++
T Consensus 32 --------------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~ 91 (121)
T 1xao_A 32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK 91 (121)
T ss_dssp --------------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred --------------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence 023578999999 999999999999999765446899999999999988 87777665
Q ss_pred EE
Q 017647 349 FS 350 (368)
Q Consensus 349 ~~ 350 (368)
+.
T Consensus 92 l~ 93 (121)
T 1xao_A 92 LE 93 (121)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.00 E-value=4e-10 Score=98.81 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=69.8
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
+.|.|+.+++.|+|.||+.|.++++..-.
T Consensus 90 R~G~DL~~~~~Isl~eAllG~~i~v~tld--------------------------------------------------- 118 (180)
T 2q2g_A 90 RDDCHLIMKVTIPLVRALTGFTCPVTTLD--------------------------------------------------- 118 (180)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECTT---------------------------------------------------
T ss_pred EcCCEEEEEEEcCHHHHhCCCEEEeeCCC---------------------------------------------------
Confidence 46899999999999999999887765210
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCC-CCCccEEEEEEEEeCCCcccccCce
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL 348 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL 348 (368)
.+.++|+||+|+++|++++|+|+|++..++ +..|||||+|+|..|..++.++.+|
T Consensus 119 ---------------------G~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 174 (180)
T 2q2g_A 119 ---------------------NRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKL 174 (180)
T ss_dssp ---------------------CCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHH
T ss_pred ---------------------CCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 125789999999999999999999997543 4579999999999998887776554
No 44
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.99 E-value=4.4e-10 Score=98.65 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=70.0
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
+.|.|+.+++.|+|.||+.|.++++..-.
T Consensus 90 R~G~DL~~~~~Isl~eAllG~~i~v~tld--------------------------------------------------- 118 (181)
T 3agx_A 90 RDGSDVIYPARISLREALCGCTVNVPTLD--------------------------------------------------- 118 (181)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECTT---------------------------------------------------
T ss_pred eeCCcEEEEEEcCHHHHhCCCEEEeECCC---------------------------------------------------
Confidence 46899999999999999999887765210
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCC-CCCCccEEEEEEEEeCCCcccccCce
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGIDL 348 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-~~~~GDL~v~i~v~~~~~f~r~g~dL 348 (368)
.+.++|+||+|+++|++++|+|+|++..+ .+..|||||+|+|..|..++.++.+|
T Consensus 119 ---------------------G~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~ 174 (181)
T 3agx_A 119 ---------------------GRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTV 174 (181)
T ss_dssp ---------------------SCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHH
T ss_pred ---------------------CCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 13578899999999999999999999764 34579999999999999888776654
No 45
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.94 E-value=4.6e-10 Score=109.16 Aligned_cols=64 Identities=50% Similarity=0.723 Sum_probs=55.3
Q ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 77 ~d~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.++|++||+.+.++.++|+++|+++++++|||+.+.+ .+.++|++|++||++|+|+++|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4899999999999999999999999999999998754 378899999999999999999999996
No 46
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.94 E-value=4.3e-10 Score=97.73 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=69.2
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
+.|.|+.+++.|+|.||+.|.++++..-
T Consensus 84 R~G~DL~~~~~Isl~eAllG~~~~v~tl---------------------------------------------------- 111 (170)
T 1c3g_A 84 RDGDDLIYTLPLSFKESLLGFSKTIQTI---------------------------------------------------- 111 (170)
T ss_dssp EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred EeCCcEeEEEEcCHHHHhCCCeEEeeCC----------------------------------------------------
Confidence 4689999999999999999988776521
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCC-CCCccEEEEEEEEeCCCcccccCce
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDL 348 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~~~~f~r~g~dL 348 (368)
+...++|+||+|+++|++++|+|+|++..++ +..|||||+|+|..|..++.++.+|
T Consensus 112 --------------------dG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 168 (170)
T 1c3g_A 112 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA 168 (170)
T ss_dssp --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred --------------------CCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHh
Confidence 0125789999999999999999999997543 3579999999999998887766544
No 47
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.6e-09 Score=78.53 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=47.1
Q ss_pred ccchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccch
Q 017647 78 DYYATLGVPKS---ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (368)
Q Consensus 78 d~y~iLgv~~~---a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~ 132 (368)
+-|+||||+++ ++.++|+++||+|....|||+. +..-...+|++|++.|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence 45899999999 9999999999999999999996 6778889999999999754
No 48
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.82 E-value=1.9e-09 Score=103.12 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=70.5
Q ss_pred ccCcceEEEEeeecccccccceeeEeecceeecccccCCccccCceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCC
Q 017647 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (368)
Q Consensus 193 ~~g~di~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 272 (368)
+.|.||.+++.|+|.||+.|.+++|..-
T Consensus 229 R~G~DL~~~~~Isl~eAllG~~v~VptL---------------------------------------------------- 256 (329)
T 3lz8_A 229 IVGHNLEIVLPLAPWEAALGAKVTVPTL---------------------------------------------------- 256 (329)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred EcCCcEEEEEECCHHHHcCCCeEEEECC----------------------------------------------------
Confidence 5789999999999999999988776421
Q ss_pred CccEEEceeeeeeccceEEEEeeEEEEEeCCCCcCCCEEEEccCCCCCCCCCCCccEEEEEEEEeCCCcccccCceEEE
Q 017647 273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (368)
Q Consensus 273 G~G~~~~~~C~~C~g~g~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~~~~f~r~g~dL~~~ 351 (368)
++.++|+||+|+++|++++|+|+|++.. ...|||||+|+|..|+.+..++..|+.+
T Consensus 257 ---------------------dG~v~l~ip~gt~~g~~~rl~G~GmP~~--~~rGDL~v~~~V~~P~~l~~~q~~~l~~ 312 (329)
T 3lz8_A 257 ---------------------KESILLTVPPGSQAGQRLRIKGKGLVSK--THTGDLFAVIKIVMPTKPDEKARELWQQ 312 (329)
T ss_dssp ---------------------SSCEEEEECTTCCTTCEEEETTCSCBCS--SCBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred ---------------------CCCEEEEECCCCCCCCEEEEcCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 2336899999999999999999999965 4689999999999999888777666543
No 49
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.1e-05 Score=64.01 Aligned_cols=50 Identities=30% Similarity=0.730 Sum_probs=39.6
Q ss_pred eeecccccCCccccC-----ceeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEceeee
Q 017647 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 283 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~ 283 (368)
...|+.|+|+|.... ....+|+.|+|.|+++. .+|+.|+|.|.+.+.+-.
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l 99 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQKKRS 99 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCCCSS
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEEEEE
Confidence 468999999996521 13578999999998864 689999999998765443
No 50
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.73 E-value=1.3e-05 Score=60.05 Aligned_cols=47 Identities=32% Similarity=0.798 Sum_probs=37.2
Q ss_pred ceeecccccCCccccCc-----eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647 221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (368)
....|+.|+|+|..... ...+|+.|+|.|+++. .+|+.|+|.|.+.+
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER 78 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEee
Confidence 35689999999975321 2468999999998753 68999999998754
No 51
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.63 E-value=3.2e-06 Score=87.16 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=59.0
Q ss_pred EEEEeeecccccccceeeEeecceeecccccCCccccCc---eeeeCCCCCCccEEEEe--------eeCCCcce-eeee
Q 017647 199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---KMRICSTCGGRGQVMRT--------DQTPFGLF-SQVS 266 (368)
Q Consensus 199 ~~~l~itlee~~~G~~~~~~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~--------~~~~~g~~-~~~~ 266 (368)
.+++.|+|+|+.+|.++++.+.+...|..|+|+|++.+. .+.+|+.|+|....... ...-.|.| +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 367899999999999999999999999999999999887 57899999998421110 01111222 2346
Q ss_pred eCCCCCCccE
Q 017647 267 VCPSCGGEGE 276 (368)
Q Consensus 267 ~C~~C~G~G~ 276 (368)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 8999998764
No 52
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.30 E-value=2.8e-05 Score=53.65 Aligned_cols=31 Identities=26% Similarity=0.737 Sum_probs=19.6
Q ss_pred eeecccccCCccccCceeeeCCCCCCccEEEEee
Q 017647 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255 (368)
Q Consensus 222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~ 255 (368)
...|+.|+|+|.... .+|+.|+|.|.++..+
T Consensus 9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~q 39 (53)
T 2bx9_A 9 EVACPKCERAGEIEG---TPCPACSGKGVILTAQ 39 (53)
T ss_dssp EEECTTTTTSSEETT---EECTTTTTSSEEECHH
T ss_pred cccCCCCcceeccCC---CCCccCCCCccEEEEe
Confidence 356777777776542 4677777777665433
No 53
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.28 E-value=6.3e-05 Score=51.86 Aligned_cols=28 Identities=43% Similarity=0.947 Sum_probs=19.3
Q ss_pred eeCCCCCCccEEEceeeeeeccceEEEE
Q 017647 266 SVCPSCGGEGEVISEYCRKCSGEGRIRL 293 (368)
Q Consensus 266 ~~C~~C~G~G~~~~~~C~~C~g~g~v~~ 293 (368)
.+|+.|+|+|.++.++|..|+|.|.+..
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 5677777777777777777777776543
No 54
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.10 E-value=0.00021 Score=49.20 Aligned_cols=28 Identities=32% Similarity=0.926 Sum_probs=15.0
Q ss_pred eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (368)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (368)
.+|+.|+|+|.++. .+|+.|+|.|.+.+
T Consensus 10 ~~C~~C~GsG~~i~------------~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------------EPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETT------------EECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCC------------CcCCCCCCcEEEEE
Confidence 34555555555432 45666666665543
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.94 E-value=0.00036 Score=48.02 Aligned_cols=29 Identities=28% Similarity=0.878 Sum_probs=19.5
Q ss_pred eeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEEc
Q 017647 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (368)
Q Consensus 239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 279 (368)
..+|+.|+|.|.++. .+|+.|+|.|.++.
T Consensus 9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEG------------TPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETT------------EECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCC------------CCCccCCCCccEEE
Confidence 456777777776532 56777777777654
No 56
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.17 E-value=0.12 Score=53.39 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=38.9
Q ss_pred ccccccchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhh
Q 017647 74 CASGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEV 128 (368)
Q Consensus 74 ~~~~d~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~ 128 (368)
....|||.+||++.+... .+|++|||+||+..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 445689999999777665 77999999999976555 4788889988876
No 57
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=64.53 E-value=11 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.538 Sum_probs=18.5
Q ss_pred eeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEE
Q 017647 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (368)
Q Consensus 240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 278 (368)
-.|..|+.... ..+. .+.+..-..|+.|++.|...
T Consensus 135 f~C~~C~~~~~---v~~~-~~~~~~P~~Cp~C~~~~f~l 169 (279)
T 1ltl_A 135 FECRGCMRHHA---VTQS-TNMITEPSLCSECGGRSFRL 169 (279)
T ss_dssp EEETTTCCEEE---EECS-SSSCCCCSCCTTTCCCCEEE
T ss_pred EEcCCCCCEEE---EEec-CCcccCCCcCCCCCCCCcEE
Confidence 35677764321 1221 22333336799998888544
No 58
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=47.35 E-value=19 Score=25.73 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH--HHHhhccc-hhhhhhhcccc
Q 017647 88 SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEIS--AAYEVLSD-DKKRAMYDQYG 142 (368)
Q Consensus 88 ~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~--~Ay~~L~d-~~~r~~yd~~g 142 (368)
-++.+|.+++|++|...++-+.... =+.....|. .-|.+|.+ ..++++|+.|-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~t--We~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNAS--WEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCC--HHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCC--HHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 5689999999999999986554321 111122222 24777776 46667887764
No 59
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=45.01 E-value=22 Score=25.76 Aligned_cols=54 Identities=15% Similarity=0.388 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhccc-hhhhhhhccccc
Q 017647 89 ASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSD-DKKRAMYDQYGE 143 (368)
Q Consensus 89 a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~f~~i~~Ay~~L~d-~~~r~~yd~~g~ 143 (368)
.-+..++.+|+.+.+...|..... ..+..+|..-. +|..+.+ ..++.+|+.|-.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 346778899999999888876553 34556666554 7998866 577789998853
No 60
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=44.53 E-value=24 Score=24.28 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHH---HHHHhhccc-hh-hhhhhcccc
Q 017647 92 KEIKAAYRKLARQYHPDVNKEPGATEKFKEI---SAAYEVLSD-DK-KRAMYDQYG 142 (368)
Q Consensus 92 ~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i---~~Ay~~L~d-~~-~r~~yd~~g 142 (368)
+|..+||.+|.+...=|.. -.=+...+.| ..-|.+|.| |. ++++|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s~--wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST--WSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS--CCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC--CcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 5788999999998765543 2234445555 456999997 65 677888874
No 61
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=40.28 E-value=26 Score=33.71 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=40.8
Q ss_pred eeeCCCCCCccEEE-EeeeCC-Ccc-eeeeeeCCCCCCccEEEce--------eee--eecc----ce-EE------EEe
Q 017647 239 MRICSTCGGRGQVM-RTDQTP-FGL-FSQVSVCPSCGGEGEVISE--------YCR--KCSG----EG-RI------RLK 294 (368)
Q Consensus 239 ~~~C~~C~G~G~~~-~~~~~~-~g~-~~~~~~C~~C~G~G~~~~~--------~C~--~C~g----~g-~v------~~~ 294 (368)
...|+.|+..|... ....+| |+- +.+...|+.|+=+-.-+.. .+. ++.. .. ++ ..-
T Consensus 12 ~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~~~~DLnr~VvKS~tati~I 91 (404)
T 2qkd_A 12 ESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVRSQEDMNREVVKTDSATTRI 91 (404)
T ss_dssp EEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEECSHHHHTCEEEECTTCEEEE
T ss_pred cccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEECChhcccceEEEcCCcEEEe
Confidence 56788888777643 223444 332 3455789999866432210 111 1100 00 01 111
Q ss_pred eEEEEEeCCCCcCCCEEEEcc
Q 017647 295 KNIKVKVPPGVSTGSILRVVG 315 (368)
Q Consensus 295 ~~l~V~Ip~G~~~G~~i~l~g 315 (368)
-.|.+.||||...|..-++.|
T Consensus 92 PEL~~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 92 PELDFEIPAFSQKGALTTVEG 112 (404)
T ss_dssp GGGTEEECTTSSCCEEEEHHH
T ss_pred eeeeEEecCccCCceEEeHHH
Confidence 235668899998887777765
No 62
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=35.46 E-value=16 Score=26.87 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=26.6
Q ss_pred ceeecccccCCccccCc--eeeeCCCCCCccEEEEeeeCCCcceeeeeeCCCCCCccEEE
Q 017647 221 HLETCEVCTGTGAKMGS--KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (368)
Q Consensus 221 ~~~~C~~C~G~G~~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 278 (368)
+.+.|..|...|-.... ....|..|...|.+.+....+ .....|-.|+..|++-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p----~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP----FHTIYCYNCGGKGHFG 59 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCG
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCC----CCCCeecccCCCCcCc
Confidence 34679999888843221 234688888888764322111 1236799999999853
No 63
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=34.67 E-value=42 Score=32.29 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=14.3
Q ss_pred EEEEeCCCCcCCCEEEEcc
Q 017647 297 IKVKVPPGVSTGSILRVVG 315 (368)
Q Consensus 297 l~V~Ip~G~~~G~~i~l~g 315 (368)
|.+.||||...|..-++.|
T Consensus 302 L~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 302 LEFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp GTEEECTTTTCSEEEEHHH
T ss_pred eeEEecCCCCCceEEeHHH
Confidence 4568889988887777755
No 64
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=31.47 E-value=24 Score=24.33 Aligned_cols=9 Identities=44% Similarity=1.516 Sum_probs=5.7
Q ss_pred eeCCCCCCc
Q 017647 266 SVCPSCGGE 274 (368)
Q Consensus 266 ~~C~~C~G~ 274 (368)
..|+.|++.
T Consensus 19 ~~CP~CG~~ 27 (60)
T 2apo_B 19 EICPKCGEK 27 (60)
T ss_dssp SBCSSSCSB
T ss_pred ccCcCCCCc
Confidence 567776654
No 65
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=30.23 E-value=34 Score=23.63 Aligned_cols=10 Identities=40% Similarity=1.189 Sum_probs=6.3
Q ss_pred eeCCCCCCcc
Q 017647 266 SVCPSCGGEG 275 (368)
Q Consensus 266 ~~C~~C~G~G 275 (368)
..|+.|++.-
T Consensus 18 ~~CP~CG~~t 27 (60)
T 2aus_D 18 ETCPVCGEKT 27 (60)
T ss_dssp SBCTTTCSBC
T ss_pred ccCcCCCCcc
Confidence 5677776644
No 66
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=28.95 E-value=64 Score=29.09 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=36.7
Q ss_pred eeeCCCCCCccEEEc--------eeeeeeccceEE--------EEeeEEEEEeCC-CCcCCC---EEEEccCCCCCCCCC
Q 017647 265 VSVCPSCGGEGEVIS--------EYCRKCSGEGRI--------RLKKNIKVKVPP-GVSTGS---ILRVVGEGDAGPRGG 324 (368)
Q Consensus 265 ~~~C~~C~G~G~~~~--------~~C~~C~g~g~v--------~~~~~l~V~Ip~-G~~~G~---~i~l~g~G~~~~~~~ 324 (368)
.-.|..|+-...+.. ..|+.|...+.. .+..+++|+=.| -+..|+ .+.+.=.++- ....
T Consensus 134 ~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dL-vd~~ 212 (279)
T 1ltl_A 134 VFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDL-VDTL 212 (279)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGG-TTCC
T ss_pred EEEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccc-cCcc
Confidence 368999986654432 479999988743 234455554222 233332 1222223322 1234
Q ss_pred CCccEEEEEEE
Q 017647 325 PPGDLYVYLDV 335 (368)
Q Consensus 325 ~~GDL~v~i~v 335 (368)
.|||-+...=|
T Consensus 213 ~PGDrV~vtGI 223 (279)
T 1ltl_A 213 TPGDIVRVTGT 223 (279)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 57887764444
No 67
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=28.64 E-value=91 Score=24.81 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=30.4
Q ss_pred EEEEEeCCCCcCCCEEEEccCCCCCCCC---------CCCccEEEEEEEEeCC
Q 017647 296 NIKVKVPPGVSTGSILRVVGEGDAGPRG---------GPPGDLYVYLDVEEIP 339 (368)
Q Consensus 296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~---------~~~GDL~v~i~v~~~~ 339 (368)
...-.||.|+++|+.|++.|.=.+.... ....|+.++++...+.
T Consensus 7 P~~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 7 PHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp CEEEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred CEEeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 3567899999999999999975432210 1245787877776654
No 68
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=27.94 E-value=2.6e+02 Score=24.65 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=41.5
Q ss_pred eeeC--CCCCCccEEEEeee--CCCcceeeeeeCCCCCCccE-EEc-eeeeeeccceEEEEeeEEEE-----EeCCCCcC
Q 017647 239 MRIC--STCGGRGQVMRTDQ--TPFGLFSQVSVCPSCGGEGE-VIS-EYCRKCSGEGRIRLKKNIKV-----KVPPGVST 307 (368)
Q Consensus 239 ~~~C--~~C~G~G~~~~~~~--~~~g~~~~~~~C~~C~G~G~-~~~-~~C~~C~g~g~v~~~~~l~V-----~Ip~G~~~ 307 (368)
.-.| ..|+.. +.... ...+.+..-..|+.|+..|. ... +.|.- .+..+|+| .+|+|--|
T Consensus 141 ~f~C~~~~C~~~---~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~f-------~D~Q~ikiQE~pe~vp~G~~P 210 (268)
T 2vl6_A 141 TYKHIHPDCMQE---FEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKL-------IDWQKAVIQERPEEVPSGQLP 210 (268)
T ss_dssp EEEEECTTCCCE---EESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCEE-------EEEEEEEEECCGGGSCTTSCC
T ss_pred EEECCCCCCCCE---EeeeecccCCCcccCCccCCCCCCCCCEEEecCccEE-------EeeEEEEEEeCCCCCCCCCCC
Confidence 3579 889732 22220 12233444467999999873 322 33322 23345555 24455444
Q ss_pred CCEEEEccCCCCCCCCCCCccEEEEEEE
Q 017647 308 GSILRVVGEGDAGPRGGPPGDLYVYLDV 335 (368)
Q Consensus 308 G~~i~l~g~G~~~~~~~~~GDL~v~i~v 335 (368)
.+.. +.=.++- .....|||-+...=|
T Consensus 211 rsi~-v~l~~dL-vd~~~PGDrV~vtGI 236 (268)
T 2vl6_A 211 RQLE-IILEDDL-VDSARPGDRVKVTGI 236 (268)
T ss_dssp CEEE-EEEEGGG-TTSSCTTCEEEEEEE
T ss_pred cEEE-EEEccCc-cCcccCCCEEEEEEE
Confidence 3322 2223332 224568888775544
No 69
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=27.81 E-value=77 Score=21.61 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 95 k~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4556777778888864 56788899999999998776654443
No 70
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=26.39 E-value=80 Score=28.14 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=14.8
Q ss_pred eEEEEEeCC----CCcCCCEEEEcc
Q 017647 295 KNIKVKVPP----GVSTGSILRVVG 315 (368)
Q Consensus 295 ~~l~V~Ip~----G~~~G~~i~l~g 315 (368)
+.++|.+.. -+++|+++.+.|
T Consensus 211 rsi~v~l~~dLvd~~~PGDrV~vtG 235 (268)
T 2vl6_A 211 RQLEIILEDDLVDSARPGDRVKVTG 235 (268)
T ss_dssp CEEEEEEEGGGTTSSCTTCEEEEEE
T ss_pred cEEEEEEccCccCcccCCCEEEEEE
Confidence 456665543 588999998876
No 71
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.61 E-value=95 Score=22.34 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhccc
Q 017647 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (368)
Q Consensus 95 k~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~~ 141 (368)
-+.+|...+.-||+.. ...+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~---~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS---DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC---SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777788899974 3678889999999999988877655553
No 72
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.68 E-value=1e+02 Score=21.72 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 96 AAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 96 ~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 17 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 17 KDERRKILQAFPDMH----NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHTTCSSCC----HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 445666677788763 56788899999999998777655554
No 73
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=22.80 E-value=1.5e+02 Score=24.42 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=31.0
Q ss_pred EEEEEeCCCCcCCCEEEEccCCCCCCCC-------C--CCccEEEEEEEEeCC
Q 017647 296 NIKVKVPPGVSTGSILRVVGEGDAGPRG-------G--PPGDLYVYLDVEEIP 339 (368)
Q Consensus 296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-------~--~~GDL~v~i~v~~~~ 339 (368)
...-.||.|+++|+.|+|.|.=.+.... + ...|+.+.++...+.
T Consensus 30 Py~~~ipggL~~G~~I~I~G~v~~~a~rF~INl~~g~~~~~dIalHfnpRF~~ 82 (164)
T 3i8t_A 30 PYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDG 82 (164)
T ss_dssp SEEEECTTCCCTTCEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEECSS
T ss_pred CeeeeCCCCCCCCCEEEEEEEECCCCCEEEEEeccCCCCCCCEEEEEEeeeCC
Confidence 3567899999999999999975432211 1 235888888877664
No 74
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=22.36 E-value=1.2e+02 Score=21.42 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 95 k~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566777788899864 56788899999999998776654443
No 75
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.03 E-value=1.2e+02 Score=22.11 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 96 AAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 96 ~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 20 QDHRPQFLIENPKTS----LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHCCSSC----HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445666677789864 56888899999999998777665554
No 76
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose, chitooligosaccharides; HET: CTO; 1.90A {Coprinus cinereus} PDB: 2r0f_A*
Probab=21.96 E-value=2e+02 Score=23.85 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=19.3
Q ss_pred EEEEeCCCCcCCCEEEEccCCC
Q 017647 297 IKVKVPPGVSTGSILRVVGEGD 318 (368)
Q Consensus 297 l~V~Ip~G~~~G~~i~l~g~G~ 318 (368)
-++.|+.|+++|+.|.|.|.-.
T Consensus 9 ~~~~L~~~L~~G~~i~I~G~v~ 30 (164)
T 2r0h_A 9 STVDLSEPLKDNGIIVFQSDKL 30 (164)
T ss_dssp EEEECSSCCCTTCEEEEECSCC
T ss_pred eeEECCCCccCCCEEEEEEEec
Confidence 4789999999999999999743
No 77
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=21.94 E-value=1.3e+02 Score=21.87 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 96 AAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 96 ~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 20 NERREQIRTRHPDLP----FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHCTTCC----HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666777889864 56788899999999998877654443
No 78
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.47 E-value=76 Score=23.18 Aligned_cols=53 Identities=11% Similarity=0.220 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH--HHHhhccchhhhhhhcccc
Q 017647 88 SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEIS--AAYEVLSDDKKRAMYDQYG 142 (368)
Q Consensus 88 ~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~f~~i~--~Ay~~L~d~~~r~~yd~~g 142 (368)
..+.+|-+++|+.|.+.++-+.... =+.....|. .-|.+|....+|++|+.|-
T Consensus 13 ~~t~eea~~~Fk~LL~e~~V~p~~t--We~~~~~i~~DpRY~aL~~~eRK~~F~~y~ 67 (82)
T 2dod_A 13 IVPLEARMKQFKDMLLERGVSAFST--WEKELHKIVFDPRYLLLNPKERKQVFDQYV 67 (82)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCSSSC--HHHHHHHHHTCSGGGTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCCCC--HHHHHHHHccCCccccCCHHHHHHHHHHHH
Confidence 4588999999999999987654421 122223332 2377777667888898875
No 79
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=21.40 E-value=1.5e+02 Score=23.56 Aligned_cols=42 Identities=7% Similarity=-0.007 Sum_probs=27.7
Q ss_pred EEEEeCCCCcCCCEEEEccCCCCCCCC-----CCCccEEEEEEEEeC
Q 017647 297 IKVKVPPGVSTGSILRVVGEGDAGPRG-----GPPGDLYVYLDVEEI 338 (368)
Q Consensus 297 l~V~Ip~G~~~G~~i~l~g~G~~~~~~-----~~~GDL~v~i~v~~~ 338 (368)
..-.||.|+++|+.|++.|.=.+.+.. ....|+.++++...+
T Consensus 10 ~~~~i~~gl~~G~~i~I~G~v~~~~~~F~Inl~~~~dialHfnpRf~ 56 (138)
T 3nv1_A 10 FITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFD 56 (138)
T ss_dssp EEEECTTCCCTTCEEEEEEEECTTCCBEEEEEEETTEEEEEEEEETT
T ss_pred EEeeCCCCCCCCCEEEEEEEECCCCCEEEEEcCcCCCEEEEEEEecC
Confidence 456789999999999999975543311 001266666666554
No 80
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.10 E-value=1.1e+02 Score=22.30 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhcc
Q 017647 96 AAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (368)
Q Consensus 96 ~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd~ 140 (368)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....|.
T Consensus 33 ~~~r~~~k~~~P~~~----~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 33 EEKRRQLQEERPELS----ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHTHHHHHHHCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455666777889853 57788999999999998877665554
No 81
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=20.89 E-value=44 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=27.7
Q ss_pred cchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 017647 79 YYATLGVPKSASGKEIKAAYRKLARQYHPDV 109 (368)
Q Consensus 79 ~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~ 109 (368)
++..|-|....+.+|++++-..+..++|||-
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 4788888889999999999999999999984
No 82
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=20.67 E-value=1.4e+02 Score=20.60 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccchhhhhhhc
Q 017647 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD 139 (368)
Q Consensus 95 k~ayr~l~~~~hPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yd 139 (368)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |+.|.
T Consensus 15 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIK----VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCC----HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCc---hHHHH
Confidence 3456666777889874 57788899999999987 55554
No 83
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A*
Probab=20.66 E-value=1.3e+02 Score=24.42 Aligned_cols=42 Identities=7% Similarity=0.072 Sum_probs=27.7
Q ss_pred EEEEeCCCCcCCCEEEEccC-CCCCCCC------CCCccEEEEEEEEeC
Q 017647 297 IKVKVPPGVSTGSILRVVGE-GDAGPRG------GPPGDLYVYLDVEEI 338 (368)
Q Consensus 297 l~V~Ip~G~~~G~~i~l~g~-G~~~~~~------~~~GDL~v~i~v~~~ 338 (368)
..+.||.|+++|+.|++.|. =...... ...+|+.++++...+
T Consensus 9 ~~~~ip~gl~~G~~i~I~G~~~~~~a~rF~INl~~g~~dialHfnpRf~ 57 (150)
T 2wkk_A 9 NQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPG 57 (150)
T ss_dssp EEEEEEEEECTTCEEEEECSCCCTTCCCEEEEEECTTCCEEEEEEEETT
T ss_pred cceecCCCCcCCCEEEEEEEECCCCCCEEEEEEecCCCCEEEEEeeecC
Confidence 35788899999999999993 2221110 112478777777655
No 84
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.62 E-value=1.3e+02 Score=24.59 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEEeCCCCcCCCEEEEccCCCCCCCC-------CCCccEEEEEEEEeC
Q 017647 296 NIKVKVPPGVSTGSILRVVGEGDAGPRG-------GPPGDLYVYLDVEEI 338 (368)
Q Consensus 296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-------~~~GDL~v~i~v~~~ 338 (368)
.....||.|+++|+.|+|.|.=.+.... +..+|+.++++...+
T Consensus 18 Pf~~~ip~gl~~G~~i~I~G~v~~~~~rF~Inl~~g~~~dialHfnpRf~ 67 (155)
T 2yro_A 18 PFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLN 67 (155)
T ss_dssp SEEEECSSCCCTTCEEEEEEEECTTCCCEEEEEEETTTTEEEEEEECCSS
T ss_pred CEeeecCCCCccCCEEEEEEEECCCCCEEEEEEecCCCCCEEEEEEEEcC
Confidence 3567899999999999999965433211 111466666665544
Done!