Query 017648
Match_columns 368
No_of_seqs 433 out of 3484
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.9 2.8E-22 6.1E-27 206.5 17.4 149 26-182 368-528 (623)
2 PLN00113 leucine-rich repeat r 99.9 1.1E-21 2.3E-26 212.9 17.1 159 25-187 24-206 (968)
3 PLN00113 leucine-rich repeat r 99.7 2.5E-17 5.3E-22 178.9 12.4 112 74-186 453-564 (968)
4 PLN03150 hypothetical protein; 99.3 1.5E-12 3.1E-17 134.7 7.6 92 98-189 419-510 (623)
5 KOG0617 Ras suppressor protein 99.3 4.6E-14 9.9E-19 118.8 -4.3 108 72-182 32-140 (264)
6 KOG0617 Ras suppressor protein 99.2 6.4E-13 1.4E-17 112.0 -2.2 106 73-181 56-162 (264)
7 KOG0472 Leucine-rich repeat pr 99.1 2.5E-11 5.5E-16 114.4 0.7 104 76-182 415-541 (565)
8 PF14580 LRR_9: Leucine-rich r 98.9 6.4E-10 1.4E-14 96.2 4.2 104 74-182 20-126 (175)
9 KOG0444 Cytoskeletal regulator 98.9 1.6E-10 3.5E-15 114.2 -0.1 106 74-182 127-258 (1255)
10 KOG0444 Cytoskeletal regulator 98.9 1.9E-10 4.1E-15 113.8 -0.8 107 73-182 78-186 (1255)
11 KOG0472 Leucine-rich repeat pr 98.9 9.4E-11 2E-15 110.6 -3.8 128 88-220 197-325 (565)
12 KOG4194 Membrane glycoprotein 98.9 2E-10 4.3E-15 112.9 -1.8 108 75-182 295-405 (873)
13 PF08263 LRRNT_2: Leucine rich 98.8 4.7E-09 1E-13 69.2 4.3 41 29-71 2-43 (43)
14 KOG0618 Serine/threonine phosp 98.8 1.1E-09 2.3E-14 112.7 -0.1 103 73-180 383-487 (1081)
15 PF13855 LRR_8: Leucine rich r 98.8 5E-09 1.1E-13 74.6 3.1 57 99-155 3-59 (61)
16 KOG4237 Extracellular matrix p 98.8 4.3E-09 9.4E-14 99.3 3.5 131 86-226 262-394 (498)
17 PRK15387 E3 ubiquitin-protein 98.8 1.2E-08 2.5E-13 106.8 6.6 60 122-186 403-462 (788)
18 KOG4194 Membrane glycoprotein 98.7 8.4E-09 1.8E-13 101.7 4.8 107 74-182 79-186 (873)
19 PF13855 LRR_8: Leucine rich r 98.7 6.4E-09 1.4E-13 74.0 3.0 61 121-181 1-61 (61)
20 PRK15370 E3 ubiquitin-protein 98.7 1.8E-07 4E-12 98.1 14.2 96 75-182 180-275 (754)
21 KOG0532 Leucine-rich repeat (L 98.6 4.6E-09 1E-13 103.1 -0.4 105 74-183 144-248 (722)
22 KOG0618 Serine/threonine phosp 98.6 1.9E-09 4E-14 111.0 -3.6 106 74-183 360-466 (1081)
23 PRK15370 E3 ubiquitin-protein 98.6 1.2E-07 2.6E-12 99.5 8.2 101 73-186 199-299 (754)
24 cd00116 LRR_RI Leucine-rich re 98.6 2.3E-08 5.1E-13 94.6 2.7 110 73-182 81-206 (319)
25 cd00116 LRR_RI Leucine-rich re 98.6 2.4E-08 5.3E-13 94.5 2.7 110 74-183 109-235 (319)
26 KOG1259 Nischarin, modulator o 98.6 1.2E-08 2.5E-13 93.4 -0.2 104 75-184 309-414 (490)
27 PLN03210 Resistant to P. syrin 98.5 2.3E-07 4.9E-12 102.8 9.4 108 74-184 612-719 (1153)
28 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.2E-13 92.8 -0.7 103 74-182 285-387 (490)
29 PF14580 LRR_9: Leucine-rich r 98.5 1.1E-07 2.4E-12 82.4 4.2 86 93-183 15-102 (175)
30 KOG4237 Extracellular matrix p 98.5 1.5E-08 3.2E-13 95.8 -2.0 108 74-182 68-177 (498)
31 PLN03210 Resistant to P. syrin 98.5 5.3E-07 1.2E-11 99.9 9.9 109 73-187 778-887 (1153)
32 KOG0532 Leucine-rich repeat (L 98.4 1.3E-08 2.8E-13 100.1 -4.8 106 74-186 122-227 (722)
33 PRK15387 E3 ubiquitin-protein 98.3 1.3E-06 2.8E-11 91.7 8.6 53 74-134 223-275 (788)
34 KOG4579 Leucine-rich repeat (L 98.3 4.3E-08 9.4E-13 80.1 -2.0 110 73-186 53-163 (177)
35 COG4886 Leucine-rich repeat (L 98.3 3.1E-07 6.8E-12 90.0 2.5 103 74-180 117-220 (394)
36 KOG1859 Leucine-rich repeat pr 98.2 1.1E-07 2.3E-12 96.1 -3.6 102 74-181 188-291 (1096)
37 KOG4658 Apoptotic ATPase [Sign 98.1 1E-06 2.2E-11 94.1 2.7 106 73-180 545-653 (889)
38 COG4886 Leucine-rich repeat (L 98.1 2.5E-06 5.4E-11 83.6 4.2 116 63-182 80-199 (394)
39 KOG4579 Leucine-rich repeat (L 98.1 2.1E-07 4.6E-12 76.1 -2.8 104 75-182 29-136 (177)
40 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 54.8 3.4 34 123-157 3-36 (44)
41 PF12799 LRR_4: Leucine Rich r 98.0 8.3E-06 1.8E-10 53.8 3.7 37 145-182 1-37 (44)
42 KOG1859 Leucine-rich repeat pr 97.9 4.8E-07 1E-11 91.5 -5.7 105 74-184 165-269 (1096)
43 KOG0531 Protein phosphatase 1, 97.8 9.5E-06 2.1E-10 80.3 1.5 104 73-182 95-199 (414)
44 KOG4658 Apoptotic ATPase [Sign 97.6 3.9E-05 8.5E-10 82.2 4.1 110 74-186 524-635 (889)
45 KOG0531 Protein phosphatase 1, 97.6 1.5E-05 3.2E-10 79.0 0.6 107 74-186 73-179 (414)
46 KOG3207 Beta-tubulin folding c 97.5 1.2E-05 2.6E-10 77.3 -1.7 109 73-182 146-284 (505)
47 KOG3207 Beta-tubulin folding c 97.5 3.8E-05 8.3E-10 73.9 1.2 109 73-182 197-314 (505)
48 KOG1644 U2-associated snRNP A' 97.3 0.0003 6.5E-09 61.5 4.6 80 76-158 45-126 (233)
49 KOG1644 U2-associated snRNP A' 97.2 0.00048 1E-08 60.2 5.0 85 96-183 41-127 (233)
50 KOG1909 Ran GTPase-activating 96.9 0.00026 5.5E-09 66.6 0.3 109 74-182 186-311 (382)
51 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 59.8 3.0 61 119-181 63-128 (260)
52 PF04478 Mid2: Mid2 like cell 96.6 0.0047 1E-07 51.3 5.4 10 329-338 71-80 (154)
53 KOG2982 Uncharacterized conser 96.6 0.00068 1.5E-08 62.6 0.5 82 74-155 72-156 (418)
54 KOG3665 ZYG-1-like serine/thre 96.3 0.0025 5.4E-08 66.8 2.7 83 96-180 147-231 (699)
55 KOG2123 Uncharacterized conser 96.3 0.00025 5.5E-09 64.8 -4.0 97 74-175 20-123 (388)
56 KOG1909 Ran GTPase-activating 96.3 0.0027 5.8E-08 59.9 2.5 109 73-182 92-226 (382)
57 KOG2982 Uncharacterized conser 96.2 0.0013 2.9E-08 60.8 0.4 119 62-181 35-158 (418)
58 KOG2739 Leucine-rich acidic nu 96.2 0.0023 5E-08 58.0 1.8 99 74-176 44-150 (260)
59 PRK15386 type III secretion pr 96.2 0.013 2.7E-07 57.5 6.9 95 74-182 53-169 (426)
60 KOG3665 ZYG-1-like serine/thre 96.1 0.0022 4.9E-08 67.2 1.6 110 73-184 148-265 (699)
61 KOG0473 Leucine-rich repeat pr 95.9 0.00017 3.8E-09 64.3 -6.5 83 73-158 42-124 (326)
62 PF00560 LRR_1: Leucine Rich R 95.8 0.0033 7.1E-08 34.8 0.6 18 147-165 2-19 (22)
63 PF00560 LRR_1: Leucine Rich R 95.8 0.0035 7.6E-08 34.6 0.6 18 99-117 2-19 (22)
64 PF08693 SKG6: Transmembrane a 95.8 0.02 4.4E-07 36.4 4.1 28 310-337 11-40 (40)
65 PRK15386 type III secretion pr 95.7 0.022 4.8E-07 55.8 6.2 94 73-179 72-187 (426)
66 KOG0473 Leucine-rich repeat pr 95.2 0.00032 7E-09 62.6 -7.4 89 91-182 36-124 (326)
67 PF08374 Protocadherin: Protoc 95.2 0.012 2.7E-07 51.5 2.2 24 310-333 37-61 (221)
68 PF01102 Glycophorin_A: Glycop 95.1 0.0042 9.2E-08 50.1 -0.7 29 310-339 67-95 (122)
69 COG5238 RNA1 Ran GTPase-activa 95.0 0.018 4E-07 52.8 2.9 84 74-157 31-132 (388)
70 PF02439 Adeno_E3_CR2: Adenovi 94.7 0.0069 1.5E-07 37.8 -0.4 27 310-336 6-33 (38)
71 COG5238 RNA1 Ran GTPase-activa 94.7 0.057 1.2E-06 49.7 5.2 109 73-182 92-227 (388)
72 PF01034 Syndecan: Syndecan do 94.6 0.0099 2.2E-07 41.8 0.1 28 311-338 13-40 (64)
73 PF15102 TMEM154: TMEM154 prot 94.2 0.15 3.2E-06 42.3 6.2 29 325-353 74-102 (146)
74 PF13306 LRR_5: Leucine rich r 93.5 0.23 5.1E-06 39.9 6.3 99 74-178 13-112 (129)
75 KOG2120 SCF ubiquitin ligase, 93.5 0.0042 9.2E-08 57.5 -4.5 86 73-158 185-273 (419)
76 TIGR00864 PCC polycystin catio 92.9 0.05 1.1E-06 63.7 1.9 70 151-226 1-71 (2740)
77 PF12273 RCR: Chitin synthesis 92.8 0.056 1.2E-06 44.5 1.6 32 311-342 2-33 (130)
78 PF13504 LRR_7: Leucine rich r 92.8 0.071 1.5E-06 27.4 1.4 11 147-157 3-13 (17)
79 PF05454 DAG1: Dystroglycan (D 92.7 0.032 7E-07 52.0 0.0 13 350-362 181-194 (290)
80 KOG2123 Uncharacterized conser 92.2 0.011 2.4E-07 54.3 -3.6 77 72-151 40-123 (388)
81 PTZ00382 Variant-specific surf 91.6 0.34 7.4E-06 37.6 4.5 14 310-323 66-79 (96)
82 smart00369 LRR_TYP Leucine-ric 91.0 0.23 4.9E-06 28.3 2.3 18 145-163 2-19 (26)
83 smart00370 LRR Leucine-rich re 91.0 0.23 4.9E-06 28.3 2.3 18 145-163 2-19 (26)
84 PF13306 LRR_5: Leucine rich r 89.6 0.94 2E-05 36.3 5.8 84 92-179 7-91 (129)
85 PF13908 Shisa: Wnt and FGF in 89.5 0.28 6E-06 42.7 2.7 22 310-331 78-100 (179)
86 PF12877 DUF3827: Domain of un 89.1 0.4 8.8E-06 48.8 3.7 29 310-338 269-298 (684)
87 smart00370 LRR Leucine-rich re 89.1 0.35 7.6E-06 27.5 2.0 20 120-140 1-20 (26)
88 smart00369 LRR_TYP Leucine-ric 89.1 0.35 7.6E-06 27.5 2.0 20 120-140 1-20 (26)
89 PF04478 Mid2: Mid2 like cell 89.0 0.55 1.2E-05 39.2 3.9 31 311-341 49-80 (154)
90 PF07204 Orthoreo_P10: Orthore 88.7 0.1 2.2E-06 39.5 -0.6 31 311-341 42-73 (98)
91 PF02480 Herpes_gE: Alphaherpe 88.6 0.13 2.9E-06 51.1 0.0 8 312-319 354-361 (439)
92 PF05283 MGC-24: Multi-glycosy 88.2 1.7 3.7E-05 37.8 6.6 19 313-331 160-179 (186)
93 PF14575 EphA2_TM: Ephrin type 87.6 0.17 3.8E-06 37.3 0.1 26 312-337 2-28 (75)
94 PF06809 NPDC1: Neural prolife 86.6 5.9 0.00013 37.1 9.4 14 311-324 199-212 (341)
95 KOG2120 SCF ubiquitin ligase, 86.3 0.081 1.8E-06 49.3 -2.7 85 98-182 186-273 (419)
96 PF06697 DUF1191: Protein of u 85.9 0.98 2.1E-05 41.8 4.0 15 310-324 213-227 (278)
97 PF03229 Alpha_GJ: Alphavirus 85.5 1.2 2.6E-05 35.1 3.8 16 311-326 84-99 (126)
98 PF05393 Hum_adeno_E3A: Human 84.6 0.44 9.6E-06 35.6 0.9 36 313-349 36-71 (94)
99 PTZ00382 Variant-specific surf 84.4 0.88 1.9E-05 35.3 2.6 31 306-336 65-95 (96)
100 PF15069 FAM163: FAM163 family 83.3 0.81 1.8E-05 37.7 2.0 24 310-333 6-29 (143)
101 PF06679 DUF1180: Protein of u 83.3 4.2 9.1E-05 34.7 6.4 7 325-331 108-114 (163)
102 PF14610 DUF4448: Protein of u 82.4 3.1 6.8E-05 36.4 5.6 31 308-338 156-186 (189)
103 COG3889 Predicted solute bindi 82.2 1.2 2.6E-05 46.4 3.2 24 312-335 846-871 (872)
104 TIGR03154 sulfolob_CbsA cytoch 82.0 2.2 4.7E-05 40.3 4.5 26 310-335 440-465 (465)
105 PF08374 Protocadherin: Protoc 81.4 0.97 2.1E-05 39.9 1.9 29 307-335 38-66 (221)
106 PF06809 NPDC1: Neural prolife 80.8 3.7 8E-05 38.5 5.5 32 304-335 195-227 (341)
107 PF13516 LRR_6: Leucine Rich r 80.2 0.38 8.2E-06 26.8 -0.6 13 146-158 3-15 (24)
108 PF01299 Lamp: Lysosome-associ 79.0 0.78 1.7E-05 43.5 0.7 10 329-338 291-300 (306)
109 PHA03265 envelope glycoprotein 78.7 2.8 6.1E-05 39.7 4.2 28 327-355 366-393 (402)
110 PF15345 TMEM51: Transmembrane 78.4 2 4.3E-05 38.4 3.0 29 311-339 60-88 (233)
111 smart00365 LRR_SD22 Leucine-ri 74.7 2.7 5.8E-05 24.2 1.8 14 121-134 2-15 (26)
112 PF06365 CD34_antigen: CD34/Po 74.6 3.5 7.7E-05 36.4 3.5 27 311-337 101-129 (202)
113 smart00364 LRR_BAC Leucine-ric 74.4 2.1 4.5E-05 24.6 1.3 17 146-163 3-19 (26)
114 PF02009 Rifin_STEVOR: Rifin/s 73.5 1.1 2.5E-05 42.0 0.2 19 310-328 256-274 (299)
115 PF10577 UPF0560: Uncharacteri 72.7 0.85 1.9E-05 47.8 -0.9 21 309-329 271-292 (807)
116 PF12273 RCR: Chitin synthesis 72.7 1.4 3E-05 36.1 0.5 25 317-341 5-29 (130)
117 PF12191 stn_TNFRSF12A: Tumour 70.6 2 4.3E-05 34.6 0.9 16 309-324 77-92 (129)
118 PF11980 DUF3481: Domain of un 70.4 2.1 4.6E-05 31.8 0.9 19 310-328 15-33 (87)
119 PF05568 ASFV_J13L: African sw 70.3 1.4 3.1E-05 36.2 0.0 29 311-339 30-59 (189)
120 PF10873 DUF2668: Protein of u 68.9 3.3 7.1E-05 34.2 1.8 13 312-324 62-74 (155)
121 PF02480 Herpes_gE: Alphaherpe 68.8 1.6 3.5E-05 43.5 0.0 27 309-335 354-380 (439)
122 PF10577 UPF0560: Uncharacteri 68.4 1.7 3.7E-05 45.7 0.1 42 307-348 273-314 (807)
123 PHA03291 envelope glycoprotein 68.2 42 0.0009 32.1 9.1 6 332-337 314-319 (401)
124 PTZ00046 rifin; Provisional 68.0 2.4 5.2E-05 40.7 1.0 29 310-338 315-345 (358)
125 TIGR01477 RIFIN variant surfac 67.4 2.5 5.4E-05 40.4 1.0 29 310-338 310-340 (353)
126 smart00368 LRR_RI Leucine rich 67.1 4.2 9E-05 23.6 1.6 13 98-110 3-15 (28)
127 PF05283 MGC-24: Multi-glycosy 65.4 28 0.00061 30.4 7.0 28 305-332 156-184 (186)
128 PF05454 DAG1: Dystroglycan (D 64.6 2.2 4.7E-05 40.0 0.0 8 311-318 149-156 (290)
129 PTZ00234 variable surface prot 61.4 14 0.00031 36.7 5.0 17 315-331 367-383 (433)
130 PF04971 Lysis_S: Lysis protei 60.7 3.9 8.4E-05 29.3 0.7 25 311-335 33-59 (68)
131 PF01708 Gemini_mov: Geminivir 60.6 22 0.00047 27.0 4.7 8 330-337 64-71 (91)
132 PF06024 DUF912: Nucleopolyhed 59.7 18 0.0004 28.2 4.5 11 329-339 84-94 (101)
133 KOG1947 Leucine rich repeat pr 56.4 4.6 0.0001 40.0 0.7 91 91-181 208-307 (482)
134 KOG3864 Uncharacterized conser 56.3 1.4 3E-05 38.9 -2.6 34 74-107 102-135 (221)
135 TIGR01167 LPXTG_anchor LPXTG-m 55.8 12 0.00027 22.4 2.4 8 329-336 26-33 (34)
136 PF12301 CD99L2: CD99 antigen 55.5 8.3 0.00018 33.1 2.0 27 310-336 114-142 (169)
137 PF01102 Glycophorin_A: Glycop 55.2 2.3 5E-05 34.4 -1.3 31 311-341 64-94 (122)
138 PTZ00370 STEVOR; Provisional 55.2 2.7 5.7E-05 38.9 -1.1 7 341-347 284-290 (296)
139 PHA03282 envelope glycoprotein 55.1 16 0.00036 36.2 4.1 13 312-324 409-421 (540)
140 PF03302 VSP: Giardia variant- 54.9 11 0.00024 37.1 3.1 19 310-328 367-385 (397)
141 PF01299 Lamp: Lysosome-associ 51.9 7.9 0.00017 36.7 1.5 22 318-339 277-298 (306)
142 PF01690 PLRV_ORF5: Potato lea 51.8 19 0.00041 35.8 4.0 10 310-319 33-42 (465)
143 PF12768 Rax2: Cortical protei 50.8 17 0.00036 34.1 3.4 10 72-81 36-45 (281)
144 PF15050 SCIMP: SCIMP protein 48.9 2.8 6.1E-05 33.4 -1.7 8 338-345 42-49 (133)
145 PF04689 S1FA: DNA binding pro 48.9 32 0.00069 24.3 3.6 20 307-326 10-29 (69)
146 PF15176 LRR19-TM: Leucine-ric 47.9 14 0.00029 28.7 1.9 15 310-324 17-31 (102)
147 PF05624 LSR: Lipolysis stimul 46.7 23 0.0005 23.2 2.5 21 311-331 3-23 (49)
148 KOG3763 mRNA export factor TAP 46.4 9.7 0.00021 38.7 1.1 64 95-160 216-285 (585)
149 PHA03273 envelope glycoprotein 45.4 20 0.00042 35.6 3.0 34 312-345 449-483 (486)
150 PF07213 DAP10: DAP10 membrane 43.4 12 0.00027 27.6 1.0 29 311-339 34-65 (79)
151 PF10661 EssA: WXG100 protein 43.2 5.5 0.00012 33.3 -1.0 25 310-334 118-142 (145)
152 PHA03281 envelope glycoprotein 42.9 31 0.00066 35.0 3.9 11 309-319 552-562 (642)
153 PF13908 Shisa: Wnt and FGF in 42.8 12 0.00027 32.3 1.1 22 311-332 83-104 (179)
154 PRK14750 kdpF potassium-transp 40.8 18 0.00038 21.2 1.2 14 315-328 4-17 (29)
155 PF10265 DUF2217: Uncharacteri 38.6 26 0.00056 35.5 2.8 28 311-338 16-43 (514)
156 PF14991 MLANA: Protein melan- 38.3 9.4 0.0002 30.2 -0.3 6 329-334 45-50 (118)
157 KOG3864 Uncharacterized conser 38.1 6.3 0.00014 34.9 -1.4 84 97-180 101-187 (221)
158 PF15330 SIT: SHP2-interacting 36.4 10 0.00022 29.9 -0.3 9 325-333 15-23 (107)
159 TIGR03503 conserved hypothetic 36.4 9.1 0.0002 37.1 -0.7 20 317-336 353-373 (374)
160 PF14851 FAM176: FAM176 family 35.4 16 0.00034 30.8 0.6 23 311-333 25-48 (153)
161 PF10812 DUF2561: Protein of u 35.1 31 0.00068 30.2 2.4 33 310-342 63-95 (207)
162 PF05545 FixQ: Cbb3-type cytoc 34.6 27 0.00058 23.2 1.5 10 329-338 27-36 (49)
163 PHA03271 envelope glycoprotein 34.6 38 0.00083 33.2 3.1 11 329-339 477-487 (490)
164 PF07010 Endomucin: Endomucin; 34.1 63 0.0014 29.0 4.1 27 329-357 211-237 (259)
165 PF05808 Podoplanin: Podoplani 33.9 14 0.0003 31.4 0.0 15 310-324 128-142 (162)
166 PF14654 Epiglycanin_C: Mucin, 33.9 20 0.00043 27.6 0.9 30 306-335 14-44 (106)
167 KOG1094 Discoidin domain recep 33.2 21 0.00045 36.8 1.1 27 310-336 390-417 (807)
168 PF00558 Vpu: Vpu protein; In 31.9 24 0.00052 26.3 1.0 17 312-328 6-22 (81)
169 PF05808 Podoplanin: Podoplani 30.6 17 0.00036 30.8 0.0 32 301-332 123-154 (162)
170 PF13260 DUF4051: Protein of u 30.4 13 0.00027 24.6 -0.6 32 325-364 14-45 (54)
171 KOG4308 LRR-containing protein 30.3 2.3 5.1E-05 42.9 -6.1 60 75-134 146-217 (478)
172 PF05083 LST1: LST-1 protein; 30.1 25 0.00054 25.3 0.8 25 333-357 20-45 (74)
173 KOG3763 mRNA export factor TAP 29.5 24 0.00052 35.9 0.9 62 73-136 218-285 (585)
174 PF05337 CSF-1: Macrophage col 29.1 18 0.0004 33.3 0.0 39 311-350 227-266 (285)
175 PF06697 DUF1191: Protein of u 28.8 16 0.00035 33.9 -0.4 17 64-85 42-58 (278)
176 KOG1024 Receptor-like protein 28.0 53 0.0012 32.3 2.9 14 29-42 28-41 (563)
177 PF13268 DUF4059: Protein of u 27.6 44 0.00095 24.2 1.7 18 325-343 23-40 (72)
178 PLN02356 phosphateglycerate ki 27.2 42 0.00091 33.4 2.1 34 314-347 8-42 (423)
179 PF07172 GRP: Glycine rich pro 26.9 61 0.0013 25.0 2.5 7 10-16 6-12 (95)
180 PF00974 Rhabdo_glycop: Rhabdo 26.6 22 0.00047 36.2 0.0 8 62-69 133-141 (501)
181 KOG3514 Neurexin III-alpha [Si 26.5 1.8E+02 0.0038 32.4 6.5 24 306-329 1511-1534(1591)
182 PHA03099 epidermal growth fact 26.0 49 0.0011 26.9 1.9 14 212-225 67-80 (139)
183 TIGR00864 PCC polycystin catio 25.9 39 0.00085 41.0 1.9 32 79-110 1-32 (2740)
184 PF04639 Baculo_E56: Baculovir 25.5 27 0.00059 32.4 0.4 18 316-333 283-300 (305)
185 PRK14748 kdpF potassium-transp 25.3 47 0.001 19.4 1.2 13 315-327 4-16 (29)
186 KOG4308 LRR-containing protein 25.2 2.5 5.4E-05 42.7 -7.0 111 73-183 172-304 (478)
187 PHA03283 envelope glycoprotein 24.9 46 0.001 33.6 1.9 6 333-338 426-431 (542)
188 KOG3637 Vitronectin receptor, 24.9 45 0.00097 37.2 2.0 29 310-338 979-1010(1030)
189 PF02038 ATP1G1_PLM_MAT8: ATP1 24.3 28 0.0006 23.4 0.2 10 315-324 18-27 (50)
190 PHA02902 putative IMV membrane 23.9 51 0.0011 23.3 1.4 14 329-342 20-33 (70)
191 TIGR01495 ETRAMP Plasmodium ri 23.9 51 0.0011 24.9 1.6 26 310-335 51-77 (85)
192 PHA03292 envelope glycoprotein 23.8 1.2E+02 0.0026 29.5 4.3 17 310-326 318-334 (413)
193 PF02124 Marek_A: Marek's dise 23.0 60 0.0013 28.9 2.1 20 315-334 190-210 (211)
194 PF09716 ETRAMP: Malarial earl 22.3 32 0.00069 25.9 0.2 28 310-337 55-83 (84)
195 PF11770 GAPT: GRB2-binding ad 22.2 70 0.0015 26.8 2.2 14 342-355 40-53 (158)
196 PRK01470 tatA twin arginine tr 22.2 1.3E+02 0.0029 20.3 3.2 15 31-45 31-45 (51)
197 PRK10884 SH3 domain-containing 21.6 39 0.00084 30.1 0.7 29 310-338 173-201 (206)
198 PF02158 Neuregulin: Neureguli 21.4 31 0.00068 33.4 0.0 18 310-328 9-26 (404)
199 TIGR03867 MprA_tail MprA prote 21.3 78 0.0017 18.3 1.6 7 329-335 19-25 (27)
200 PF04415 DUF515: Protein of un 21.1 77 0.0017 31.3 2.6 25 311-335 32-56 (416)
201 PF03908 Sec20: Sec20; InterP 20.9 70 0.0015 24.2 1.9 10 325-334 82-91 (92)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.89 E-value=2.8e-22 Score=206.51 Aligned_cols=149 Identities=31% Similarity=0.508 Sum_probs=128.2
Q ss_pred cCcHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC-----CcceeEeC--C----CcEEEEEecCCCCcccCchhhc
Q 017648 26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPC-----SWFGVECS--D----GKVVNLNLKDLCLEGTLAPEIQ 94 (368)
Q Consensus 26 ~~~~~~~~aLl~~k~~~~~~~~~~l~~W~~~~~~~~~C-----~w~Gv~C~--~----~~v~~L~L~~n~l~g~~p~~l~ 94 (368)
....+|.++|+++|+.+. ++. ..+|. . ++| .|.||.|. . ..|+.|+|++|++.|.+|..+.
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~--g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPL--RFGWN--G---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Ccc--cCCCC--C---CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 345679999999999983 332 24786 2 345 79999995 1 2489999999999999999999
Q ss_pred CCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCC-CCCCE
Q 017648 95 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKL-QVLSE 173 (368)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~ 173 (368)
.|++|+.|+|++|.|.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+|+|.+|..+..+ .++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764 46778
Q ss_pred EeccCCCCC
Q 017648 174 SQVDEGQLS 182 (368)
Q Consensus 174 L~L~~N~l~ 182 (368)
+++.+|...
T Consensus 520 l~~~~N~~l 528 (623)
T PLN03150 520 FNFTDNAGL 528 (623)
T ss_pred EEecCCccc
Confidence 888888643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.1e-21 Score=212.93 Aligned_cols=159 Identities=30% Similarity=0.534 Sum_probs=130.1
Q ss_pred ccCcHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcceeEeC-CCcEEEEEecCCCCcccCchhhcCCCCCCEEE
Q 017648 25 CWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSII 103 (368)
Q Consensus 25 ~~~~~~~~~aLl~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~ 103 (368)
+...++|+.+|++||+.+ .++.+.+.+|+ ...++|.|.||+|+ .++|+.|+|++|+++|.++..+..+++|++|+
T Consensus 24 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~ 99 (968)
T PLN00113 24 SMLHAEELELLLSFKSSI-NDPLKYLSNWN---SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTIN 99 (968)
T ss_pred cCCCHHHHHHHHHHHHhC-CCCcccCCCCC---CCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEE
Confidence 334668999999999999 46767788997 45689999999998 67999999999999999988899999999999
Q ss_pred eecCCCCcCCccccC-CCCCCCEEEccCCcC----------------------CCCCCcccCCCCCCCEEEccCCcCCcc
Q 017648 104 LRNNSFSGIIPEGFG-ELEELEVLDFGHNNF----------------------SGPLPNDLGINHSLTILLLDNNDFVGS 160 (368)
Q Consensus 104 Ls~N~l~g~~P~~~~-~l~~L~~L~Ls~N~l----------------------~g~lP~~l~~l~~L~~L~Ls~N~l~g~ 160 (368)
|++|.++|.+|..+. .+++|++|+|++|++ ++.+|..++++.+|++|+|++|.+.+.
T Consensus 100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 999999888886654 556666665555554 455666777788888888888888888
Q ss_pred CchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 161 LSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 161 iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
+|..++++++|++|+|++|.++|.+|.
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCCh
Confidence 888888888888888888888888775
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=2.5e-17 Score=178.94 Aligned_cols=112 Identities=28% Similarity=0.449 Sum_probs=56.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.++.|+|++|.+.|.+|..+ .+.+|+.|+|++|.++|.+|..|..+++|++|+|++|++.|.+|..++++++|++|+|+
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 531 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531 (968)
T ss_pred CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence 34555555555554444432 23445555555555555555555555555555555555555555555555555555555
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|.++|.+|..+..+++|+.|+|++|+++|.+|
T Consensus 532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 555555555555555555555555555555544
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=1.5e-12 Score=134.71 Aligned_cols=92 Identities=27% Similarity=0.443 Sum_probs=88.6
Q ss_pred CCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEecc
Q 017648 98 HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVD 177 (368)
Q Consensus 98 ~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 177 (368)
.++.|+|++|.+.|.+|..+..|++|+.|+|++|.|.|.+|..++.+++|+.|+|++|+|+|.+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCc
Q 017648 178 EGQLSSAAKKEQ 189 (368)
Q Consensus 178 ~N~l~g~ip~~~ 189 (368)
+|+|+|.+|...
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 999999999643
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=4.6e-14 Score=118.85 Aligned_cols=108 Identities=23% Similarity=0.416 Sum_probs=89.6
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|.|++|.++ .+|+.+..|.+|+.|++.+|++. .+|..++.|++|+.|+++-|++. .+|..||.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 357888899999988 67888999999999999999998 78888999999999999999988 7899999999999999
Q ss_pred ccCCcCC-ccCchhhcCCCCCCEEeccCCCCC
Q 017648 152 LDNNDFV-GSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 152 Ls~N~l~-g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
|.+|+++ ..+|..|+.|..|+.|+|++|.|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 9988886 346666666666666777776664
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=6.4e-13 Score=111.99 Aligned_cols=106 Identities=33% Similarity=0.518 Sum_probs=71.3
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCC-CCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~ 151 (368)
.+++.|++.+|.|+ .+|.++..|+.|++|+++.|.+. .+|..|+.++.|+.|||.+|+++. .+|..|..++.|+.|+
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 35777888888887 67888888888888888888887 678888888888888888877753 3444444445555555
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 181 (368)
|+.|.|. .+|..++++.+|+.|.+.+|.+
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 5555554 4455555555555555555443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=2.5e-11 Score=114.35 Aligned_cols=104 Identities=26% Similarity=0.397 Sum_probs=73.4
Q ss_pred EEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCC---------------------
Q 017648 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS--------------------- 134 (368)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~--------------------- 134 (368)
+.+.+++|.+. .+|..+..++.|+.|+|++|-+. .+|.+++.+..|+.||++.|+|.
T Consensus 415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 33444444433 55555666666666666666555 45666666666666666655543
Q ss_pred -CCCCc-ccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 135 -GPLPN-DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 135 -g~lP~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
|.++. .+.++.+|..|||.+|.+. .||..+++|.+|++|++.+|+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 13333 4888999999999999999 99999999999999999999997
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=6.4e-10 Score=96.22 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=42.2
Q ss_pred cEEEEEecCCCCcccCchhhc-CCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCccc-CCCCCCCEEE
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL 151 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l-~~l~~L~~L~ 151 (368)
++++|+|.+|.|+ .+. .++ .|.+|+.|||++|.++. +. .+..+++|+.|++++|+++ .+...+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 5789999999998 343 465 58899999999999994 43 5888999999999999999 455444 4689999999
Q ss_pred ccCCcCCccC-chhhcCCCCCCEEeccCCCCC
Q 017648 152 LDNNDFVGSL-SPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 152 Ls~N~l~g~i-P~~l~~l~~L~~L~L~~N~l~ 182 (368)
|++|++...- =..+..+++|++|+|.+|+++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999997321 135678999999999999986
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.93 E-value=1.6e-10 Score=114.23 Aligned_cols=106 Identities=24% Similarity=0.365 Sum_probs=83.4
Q ss_pred cEEEEEecCCCCcccCchh-hcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCC------------------
Q 017648 74 KVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS------------------ 134 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------------------ 134 (368)
+...|+|++|+|. +||.. +-+|+.|-.|||++|.+. .+|+.+..|..|++|+|++|.+.
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 4567888888887 56654 677888888888888887 67777778888888888887542
Q ss_pred -------CCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 135 -------GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 135 -------g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
..+|.++..+.+|..+||+.|++. .+|+.+.++.+|+.|+|++|.++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 136777777888888888888888 88888889999999999998887
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.90 E-value=1.9e-10 Score=113.78 Aligned_cols=107 Identities=22% Similarity=0.346 Sum_probs=84.6
Q ss_pred CcEEEEEecCCCCc-ccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcc-cCCCCCCCEE
Q 017648 73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTIL 150 (368)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L 150 (368)
.+++.+++..|+|. .-+|.+|..|..|+.|||+.|++. ..|..+..-+++-+|+|++|+|. +||.. +.+|+.|-+|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 45677777777775 347788888888888888888888 67888888888888888888887 67765 4577888888
Q ss_pred EccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
||++|.+. .+|+.+..|..|+.|+|++|.+.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 88888887 77777888888888888888764
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.87 E-value=9.4e-11 Score=110.56 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=78.0
Q ss_pred cCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccC-CCCCCCEEEccCCcCCccCchhhc
Q 017648 88 TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLG-INHSLTILLLDNNDFVGSLSPEIY 166 (368)
Q Consensus 88 ~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~ 166 (368)
.+|++++.|.+|.-|+|..|.+. .+| +|.++..|.+|+++.|++. .+|.+++ ++.+|.+|||..|++. ++|.+++
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 44444555555555555555544 344 4444555555555555554 4566554 7888999999999999 9999999
Q ss_pred CCCCCCEEeccCCCCCccCCCCcccccccccccCcCChhHHHhhccCccccccc
Q 017648 167 KLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNL 220 (368)
Q Consensus 167 ~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 220 (368)
.+.+|++||+++|.+++--+...+.....+.. .-.+.+...++.++|....-+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~l-eGNPlrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNLHLKFLAL-EGNPLRTIRREIISKGTQEVL 325 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccceeeehhh-cCCchHHHHHHHHcccHHHHH
Confidence 99999999999999986544333332221111 122334444566666544433
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.87 E-value=2e-10 Score=112.87 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=54.9
Q ss_pred EEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
++.|+|++|.|...-+..+.....|++|||++|+++..-+..|..|..|+.|+|++|++...--..|..+.+|+.|||++
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 33444444444433333344444444444444444433334444444444444444444422222344556666677777
Q ss_pred CcCCccCch---hhcCCCCCCEEeccCCCCC
Q 017648 155 NDFVGSLSP---EIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 155 N~l~g~iP~---~l~~l~~L~~L~L~~N~l~ 182 (368)
|.+++.|-+ .|..|++|+.|+|.+|++.
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceee
Confidence 766665543 2456677777777777765
No 13
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.83 E-value=4.7e-09 Score=69.21 Aligned_cols=41 Identities=41% Similarity=0.960 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCC-CCCCCcceeEeC
Q 017648 29 NDEGLALLRLRERVVRDPYGALTSWRSCDTE-NNPCSWFGVECS 71 (368)
Q Consensus 29 ~~~~~aLl~~k~~~~~~~~~~l~~W~~~~~~-~~~C~w~Gv~C~ 71 (368)
++|+++|++||+.+..++...+.+|+ ... .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 57999999999999766777899998 432 799999999996
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=1.1e-09 Score=112.72 Aligned_cols=103 Identities=18% Similarity=0.297 Sum_probs=87.0
Q ss_pred CcEEEEEecCCCCcccCch-hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|+|. .+|. .+.+|..|++|+||+|.|+ .+|..+..+..|++|...+|++. .+| ++..++.|+++|
T Consensus 383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 47899999999988 5554 5889999999999999999 78899999999999999999998 677 888999999999
Q ss_pred ccCCcCCc-cCchhhcCCCCCCEEeccCCC
Q 017648 152 LDNNDFVG-SLSPEIYKLQVLSESQVDEGQ 180 (368)
Q Consensus 152 Ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~ 180 (368)
|+.|+++- .+|... ..++|++|||++|.
T Consensus 459 lS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 99999983 344433 33799999999997
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5e-09 Score=74.56 Aligned_cols=57 Identities=35% Similarity=0.538 Sum_probs=22.2
Q ss_pred CCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 017648 99 IKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (368)
Q Consensus 99 L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N 155 (368)
|++|++++|+++..-+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444222233334444444444444443322233334444444444443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.76 E-value=4.3e-09 Score=99.29 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=106.6
Q ss_pred cccCch-hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchh
Q 017648 86 EGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE 164 (368)
Q Consensus 86 ~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~ 164 (368)
.+..|. .|..|++|+.|+|++|.+++.-+..|..+.+++.|.|..|++...--..|.++..|+.|+|.+|+++-.-|..
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 334443 5999999999999999999888899999999999999999998554556888999999999999999888999
Q ss_pred hcCCCCCCEEeccCCCCCccCCCCccccccccc-ccCcCChhHHHhhccCccccccccCCcCC
Q 017648 165 IYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILG 226 (368)
Q Consensus 165 l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~ 226 (368)
|..+.+|..|+|-.|.|. ++|.+..+. |..... ......|..+..+++-.+.
T Consensus 342 F~~~~~l~~l~l~~Np~~------CnC~l~wl~~Wlr~~~----~~~~~~Cq~p~~~~~~~~~ 394 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFN------CNCRLAWLGEWLRKKS----VVGNPRCQSPGFVRQIPIS 394 (498)
T ss_pred ccccceeeeeehccCccc------CccchHHHHHHHhhCC----CCCCCCCCCCchhccccch
Confidence 999999999999999886 999888766 532111 3445567777666665553
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=1.2e-08 Score=106.83 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=37.9
Q ss_pred CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 122 ELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 122 ~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|+.|++++|+|+ .+|... .+|+.|+|++|+|+ .+|..++++.+|+.|+|++|+|+|.++
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 4455555555554 244322 34566666666666 677777777788888888888877655
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.74 E-value=8.4e-09 Score=101.65 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=82.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.++.|+|++|.|...-+..|.+|++|++++|..|.|+ .||...+...+|+.|+|.+|.++..-.+++..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4677999999999877788999999999999999999 789877777778888888888886555567777777777777
Q ss_pred CCcCCccCch-hhcCCCCCCEEeccCCCCC
Q 017648 154 NNDFVGSLSP-EIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 154 ~N~l~g~iP~-~l~~l~~L~~L~L~~N~l~ 182 (368)
.|.++ .||. .+..-.++++|+|++|.++
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeecccccc
Confidence 77777 4443 3444456666666666665
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=6.4e-09 Score=74.02 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=54.3
Q ss_pred CCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCC
Q 017648 121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 121 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 181 (368)
++|++|++++|+++..-+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4799999999999955556789999999999999999966667899999999999999985
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.72 E-value=1.8e-07 Score=98.14 Aligned_cols=96 Identities=24% Similarity=0.365 Sum_probs=61.3
Q ss_pred EEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
.+.|+|++++++ .+|..+. .+|+.|+|++|.++ .+|..+. .+|++|+|++|+|+ .+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 467777777777 4665554 47888888888887 4665543 46777777777777 4565443 3566666666
Q ss_pred CcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 155 NDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
|++. .+|..+. .+|+.|++++|+++
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC
Confidence 6665 5555443 35666666666555
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=4.6e-09 Score=103.14 Aligned_cols=105 Identities=24% Similarity=0.308 Sum_probs=94.0
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
-++.|.+++|+++ .+|.+++.+..|..||.+.|.+. .+|..++.|.+|+.|++..|++. .+|+++..| .|..||++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence 4788889999988 78888998889999999999998 68888999999999999999998 788888854 58899999
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
.|+++ .||..|.+|+.|++|-|.+|.++.
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 99999 999999999999999999999974
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.63 E-value=1.9e-09 Score=111.00 Aligned_cols=106 Identities=25% Similarity=0.379 Sum_probs=97.6
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCc-cccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P-~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.++.|.|.+|.|+...-+-|.++.+|++|+|++|+|. .+| ..+.++..|+.|+||+|+++ .+|..+.++..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 5788999999999888788999999999999999998 566 55789999999999999999 89999999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
.+|++. .+| ++.+++.|+.+|++.|+++-
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 999999 888 88999999999999999973
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=1.2e-07 Score=99.51 Aligned_cols=101 Identities=21% Similarity=0.332 Sum_probs=81.2
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
..++.|+|++|+|+ .+|..+. .+|++|+|++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+|
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 36889999999999 5777654 58999999999998 5776554 47899999999988 7787664 57899999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|+++ .+|..+. .+|+.|++++|+|++ +|
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP 299 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LP 299 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-Cc
Confidence 999998 6777654 479999999998874 44
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=2.3e-08 Score=94.62 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=72.5
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCC---CCEEEeecCCCCc----CCccccCCC-CCCCEEEccCCcCCCC----CCcc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTH---IKSIILRNNSFSG----IIPEGFGEL-EELEVLDFGHNNFSGP----LPND 140 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~---L~~L~Ls~N~l~g----~~P~~~~~l-~~L~~L~Ls~N~l~g~----lP~~ 140 (368)
.+++.|+|++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|+|++|.+++. +...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 47788888888777655555555555 8888888887763 233345556 7778888888877742 2233
Q ss_pred cCCCCCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCC
Q 017648 141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 141 l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
+..+.+|+.|+|++|.+++. ++..+..+.+|++|++++|.++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 45556777888888777742 3334455567778888777775
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=2.4e-08 Score=94.49 Aligned_cols=110 Identities=22% Similarity=0.394 Sum_probs=79.6
Q ss_pred cEEEEEecCCCCcc----cCchhhcCC-CCCCEEEeecCCCCcC----CccccCCCCCCCEEEccCCcCCCC----CCcc
Q 017648 74 KVVNLNLKDLCLEG----TLAPEIQSL-THIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPND 140 (368)
Q Consensus 74 ~v~~L~L~~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~g~----lP~~ 140 (368)
+++.|++++|.+.+ .+...+..+ .+|++|+|++|.+++. +...+..+.+|++|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 38888998888873 334456666 8888999998888843 334566777888889888888742 3334
Q ss_pred cCCCCCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCCc
Q 017648 141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 141 l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+..+++|+.|+|++|.+++. +...+..+++|++|++++|.+++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 45567888888888888643 33445667888888888888875
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.2e-08 Score=93.40 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=45.2
Q ss_pred EEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
|+.|++++|+|. .+. .+..|.+|+.|||++|.++ .+-..-..|.+.+.|.|++|.+. .+ ..++.+-+|.+||+++
T Consensus 309 ir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 309 LRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred eeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccc
Confidence 444444444443 121 1444444444444444444 12222223344444444444443 11 2344444555555555
Q ss_pred CcCCccCc--hhhcCCCCCCEEeccCCCCCcc
Q 017648 155 NDFVGSLS--PEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 155 N~l~g~iP--~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
|++. .+- ..+++++-|+++.|.+|++.+.
T Consensus 384 N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 384 NQIE-ELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cchh-hHHHhcccccccHHHHHhhcCCCcccc
Confidence 5554 221 1345555555555555555543
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=2.3e-07 Score=102.83 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=63.4
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.|+|.+|.|. .++..+..+++|+.|+|++|...+.+|. +..+++|+.|+|++|.....+|..++++.+|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4556666666655 4555556666666666666554445553 5566666666666665555666666666666666666
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
+|...+.+|..+ ++++|+.|++++|...+.
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccc
Confidence 654444555544 455566665555543333
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.5e-08 Score=92.77 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=86.8
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.+++|||++|.|+ .+..+..-++.++.|+++.|.+.- + ..+..|.+|+.|||++|.++ .+-..--.+-+++.|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4789999999998 788888888999999999999983 3 34888999999999999998 444444567889999999
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
+|.+. .+ ..+.++-+|.+||+.+|++.
T Consensus 361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhHh-hh-hhhHhhhhheeccccccchh
Confidence 99886 32 45778889999999999986
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=1.1e-07 Score=82.35 Aligned_cols=86 Identities=31% Similarity=0.431 Sum_probs=29.8
Q ss_pred hcCCCCCCEEEeecCCCCcCCccccC-CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhh-cCCCC
Q 017648 93 IQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEI-YKLQV 170 (368)
Q Consensus 93 l~~L~~L~~L~Ls~N~l~g~~P~~~~-~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~l~~ 170 (368)
+.+...+++|+|.+|.++ .| +.++ .+.+|+.|+|++|.++ .+. .+..+..|+.|++++|.++ .+.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 566678999999999998 34 3565 5889999999999999 443 6778999999999999999 565555 46899
Q ss_pred CCEEeccCCCCCc
Q 017648 171 LSESQVDEGQLSS 183 (368)
Q Consensus 171 L~~L~L~~N~l~g 183 (368)
|++|+|++|++..
T Consensus 90 L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 90 LQELYLSNNKISD 102 (175)
T ss_dssp --EEE-TTS---S
T ss_pred CCEEECcCCcCCC
Confidence 9999999999974
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.47 E-value=1.5e-08 Score=95.80 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=91.6
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccC-CcCCCCCC-cccCCCCCCCEEE
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH-NNFSGPLP-NDLGINHSLTILL 151 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~-N~l~g~lP-~~l~~l~~L~~L~ 151 (368)
..+.|+|..|.|+..-+..|..+++|+.|||++|+++-.-|+.|.+|.+|..|.+-+ |+|+ .+| ..|++|..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 568999999999966666799999999999999999988899999999988887766 8998 455 4588889999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
+.-|++.-.....|..|++|..|.+.+|.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 9888888666677888888888888888765
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.47 E-value=5.3e-07 Score=99.91 Aligned_cols=109 Identities=22% Similarity=0.224 Sum_probs=90.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
..++.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|..+ ++++|+.|+|++|..-..+|.. ..+|+.|+|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 368889999998888899999999999999999986656788766 7899999999998766566643 368899999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCC-CCCccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEG-QLSSAAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N-~l~g~ip~ 187 (368)
++|.++ .+|..+..+++|+.|++++| ++. .+|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~ 887 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSL 887 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCc
Confidence 999998 78999999999999999984 454 3553
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=1.3e-08 Score=100.10 Aligned_cols=106 Identities=28% Similarity=0.383 Sum_probs=61.0
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.++.|+|+.|.++ .+|..+..|+ |+.|-+++|+++ .+|++++.+..|..||.+.|.+. .+|..++.+.+|+.|.+.
T Consensus 122 ~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence 3455555555555 4454444443 555555555555 45555555555666666666655 555566666666666666
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
.|++. .+|++++.| .|..||++.|+++ .||
T Consensus 198 Rn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 198 RNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred hhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 66665 566666644 3666777777665 444
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.34 E-value=1.3e-06 Score=91.67 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=31.5
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCC
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS 134 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 134 (368)
+++.|+|.+|+|+ .+|. .+++|++|+|++|+|+ .+|.. ..+|+.|+|++|.++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence 5677777777776 3543 2467777777777777 34532 234555555555544
No 34
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=4.3e-08 Score=80.08 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=78.6
Q ss_pred CcEEEEEecCCCCcccCchhhcC-CCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQS-LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~-L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.++|++|.+. .+|+.|.. ++.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|.-+..|.+|-.||
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 36788888888887 56665544 347888888888888 67888888888888888888887 6677777778888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
..+|... +||..+..-..+-..++.++.+.+.-+
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888777 666654433344444556666654433
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=3.1e-07 Score=90.02 Aligned_cols=103 Identities=28% Similarity=0.423 Sum_probs=77.4
Q ss_pred cEEEEEecCCCCcccCchhhcCCC-CCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.++.|++.+|.++ .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+.+..|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 5777888888777 5666666664 7888888888887 56666778888888888888887 66666667778888888
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~ 180 (368)
++|++. .+|.....+..|+.|.+++|+
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 888887 777766566667788888774
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=1.1e-07 Score=96.11 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=54.0
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccc-cCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG-FGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~-~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.++.|+|++|.++. .. .+..|+.|++|||+.|.|. .+|.- ...+. |+.|+|++|.++. + ..+.+|.+|+.|||
T Consensus 188 ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLDL 261 (1096)
T ss_pred Hhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccch
Confidence 45566666666652 22 4555666666666666665 34421 11222 6666666666652 1 24455666666666
Q ss_pred cCCcCCccCc-hhhcCCCCCCEEeccCCCC
Q 017648 153 DNNDFVGSLS-PEIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 153 s~N~l~g~iP-~~l~~l~~L~~L~L~~N~l 181 (368)
++|-+.+.-- ..++.|..|+.|+|.+|.+
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6665553211 1234455566666666655
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.14 E-value=1e-06 Score=94.07 Aligned_cols=106 Identities=26% Similarity=0.315 Sum_probs=90.2
Q ss_pred CcEEEEEecCCC--CcccCch-hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 017648 73 GKVVNLNLKDLC--LEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149 (368)
Q Consensus 73 ~~v~~L~L~~n~--l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 149 (368)
..+++|-+.+|. +. .++. .|..|+.|++|||++|.=-+.+|..+++|-+|++|+|++..++ .+|..+++|..|.+
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 358888888886 33 3444 4778999999999998877899999999999999999999999 89999999999999
Q ss_pred EEccCCcCCccCchhhcCCCCCCEEeccCCC
Q 017648 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQ 180 (368)
Q Consensus 150 L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ 180 (368)
|++..+.....+|..+..|.+|++|.+....
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9999988776777777779999999987654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=2.5e-06 Score=83.63 Aligned_cols=116 Identities=27% Similarity=0.310 Sum_probs=96.5
Q ss_pred CCcceeEeCCCcEE---EEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCC-CCCEEEccCCcCCCCCC
Q 017648 63 CSWFGVECSDGKVV---NLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELE-ELEVLDFGHNNFSGPLP 138 (368)
Q Consensus 63 C~w~Gv~C~~~~v~---~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~-~L~~L~Ls~N~l~g~lP 138 (368)
+.+.+..+....+. .|++..+.+...+ ..+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|
T Consensus 80 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~ 156 (394)
T COG4886 80 ISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP 156 (394)
T ss_pred cccccccccccCCCCCceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh
Confidence 45555555544444 5888888875443 34677789999999999999 7888888885 9999999999999 777
Q ss_pred cccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 139 NDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 139 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
..++.+++|+.|++++|+++ .+|...+.+.+|+.|++++|+++
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc
Confidence 88999999999999999999 88887778899999999999997
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=2.1e-07 Score=76.08 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=85.2
Q ss_pred EEEEEecCCCCcccCchh---hcCCCCCCEEEeecCCCCcCCccccCC-CCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 017648 75 VVNLNLKDLCLEGTLAPE---IQSLTHIKSIILRNNSFSGIIPEGFGE-LEELEVLDFGHNNFSGPLPNDLGINHSLTIL 150 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~---l~~L~~L~~L~Ls~N~l~g~~P~~~~~-l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 150 (368)
+..++|+++.|- .++.. +....+|+..+|++|.|. .+|..|.. .+.++.|+|++|.++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 455777777664 34443 455567777899999999 57766654 458999999999999 799999999999999
Q ss_pred EccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
+++.|.|. ..|.-+..|.+|..|+..+|...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 99999999 77888888999999999998764
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.2e-06 Score=54.81 Aligned_cols=34 Identities=38% Similarity=0.518 Sum_probs=12.5
Q ss_pred CCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 017648 123 LEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDF 157 (368)
Q Consensus 123 L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l 157 (368)
|++|++++|+|+ .+|..+++|++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 334444444443 2333333344444444444433
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=8.3e-06 Score=53.85 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=32.9
Q ss_pred CCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 145 HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 145 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
++|++|+|++|+++ .+|..+.+|++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47999999999999 78888999999999999999997
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=4.8e-07 Score=91.52 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=86.5
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.+...+.++|.|. .+..++.-++.|+.|||+.|+|... +.+..|.+|++|||++|.+. .+|..--.--.|+.|.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 5778899999998 6778899999999999999999853 27889999999999999998 666432112359999999
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
+|.++ .+ ..+.+|.+|+.|||++|-+.+-
T Consensus 241 nN~l~-tL-~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 241 NNALT-TL-RGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ccHHH-hh-hhHHhhhhhhccchhHhhhhcc
Confidence 99998 33 3577999999999999988753
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=9.5e-06 Score=80.26 Aligned_cols=104 Identities=23% Similarity=0.308 Sum_probs=77.3
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
..++.|+|.+|.|.+ +...+..+.+|++|+|++|.++... .+..+..|+.|++++|.++. + ..+..+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhcccC
Confidence 468888899988884 3333677888999999999888533 35677778899999998873 3 35556788889999
Q ss_pred cCCcCCccCchh-hcCCCCCCEEeccCCCCC
Q 017648 153 DNNDFVGSLSPE-IYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 153 s~N~l~g~iP~~-l~~l~~L~~L~L~~N~l~ 182 (368)
++|.+. .+... +..+.+|+.+++.+|.+.
T Consensus 170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 999887 33332 467778888888888765
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.64 E-value=3.9e-05 Score=82.17 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=88.5
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCC--CCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS--FSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~--l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.++.+.+-+|.+. .++.... .+.|++|-+..|. +.-.....|..++.|++|||++|.=-+.+|..+++|-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 5677777777765 3333322 2479999999996 4423334578899999999999887789999999999999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++..+. .+|..+.+|.+|.+|++..+.....+|
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence 9999999 999999999999999999887655554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.62 E-value=1.5e-05 Score=78.96 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=84.3
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.+..+++..|.+.- +-..+..+.+|+.|+|.+|.+.. +...+..+.+|++|+|++|.|+.. ..+..+..|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 45666677777763 33457889999999999999994 444477899999999999999843 256677889999999
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|.++ .+ ..+..+.+|+.+++++|.+...-+
T Consensus 149 ~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 149 GNLIS-DI-SGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cCcch-hc-cCCccchhhhcccCCcchhhhhhh
Confidence 99998 33 345568999999999999875444
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1.2e-05 Score=77.31 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=60.6
Q ss_pred CcEEEEEecCCCCcccCc--hhhcCCCCCCEEEeecCCCCcCCcccc-CCCCCCCEEEccCCcCCC--------------
Q 017648 73 GKVVNLNLKDLCLEGTLA--PEIQSLTHIKSIILRNNSFSGIIPEGF-GELEELEVLDFGHNNFSG-------------- 135 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p--~~l~~L~~L~~L~Ls~N~l~g~~P~~~-~~l~~L~~L~Ls~N~l~g-------------- 135 (368)
.+|+.|||+.|-+....+ .-...|++|+.|+|+.|.|.-.+-... ..+++|+.|.|+.+.|+.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 467888888877664332 335677888888888887763322211 134555666666555542
Q ss_pred -----------CCCcccCCCCCCCEEEccCCcCCccCc--hhhcCCCCCCEEeccCCCCC
Q 017648 136 -----------PLPNDLGINHSLTILLLDNNDFVGSLS--PEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 136 -----------~lP~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~L~~N~l~ 182 (368)
.--.....+..|+.|||++|++. ..+ ...+.++.|+.|+++.+.+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence 11111222445666666666655 333 23456666666666666554
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.8e-05 Score=73.90 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=65.0
Q ss_pred CcEEEEEecCCCCcc-cCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCC--cccCCCCCCCE
Q 017648 73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTI 149 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~ 149 (368)
.+++.|.|++++|+. .+-..+..+++|+.|+|..|..-+.--....-+..|+.|||++|++. ..+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 466777777777762 12233455677777777777522222233344667778888877776 333 23566777777
Q ss_pred EEccCCcCCcc-Cchh-----hcCCCCCCEEeccCCCCC
Q 017648 150 LLLDNNDFVGS-LSPE-----IYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 150 L~Ls~N~l~g~-iP~~-----l~~l~~L~~L~L~~N~l~ 182 (368)
|+++.+.+... +|+. ...+.+|++|++..|++.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 77777766521 1221 245667777777777763
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.0003 Score=61.45 Aligned_cols=80 Identities=25% Similarity=0.285 Sum_probs=34.0
Q ss_pred EEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCC--cccCCCCCCCEEEcc
Q 017648 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP--NDLGINHSLTILLLD 153 (368)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L~Ls 153 (368)
..+||++|.+.. + ..|..+..|.+|.|++|.++..-|.--.-+++|+.|.|.+|++. .+- .-+..++.|++|.+-
T Consensus 45 d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeec
Confidence 345555555431 1 12444455555555555555322221122344555555555544 111 113334445555554
Q ss_pred CCcCC
Q 017648 154 NNDFV 158 (368)
Q Consensus 154 ~N~l~ 158 (368)
+|..+
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 44443
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00048 Score=60.20 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=66.2
Q ss_pred CCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCc--hhhcCCCCCCE
Q 017648 96 LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS--PEIYKLQVLSE 173 (368)
Q Consensus 96 L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~ 173 (368)
+.....+||++|.+.- + ..|..+..|.+|.|++|+|+..-|.--..+++|+.|.|.+|++. .+- .-+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 3577889999999973 2 35778999999999999999544433334578999999999987 332 23567889999
Q ss_pred EeccCCCCCc
Q 017648 174 SQVDEGQLSS 183 (368)
Q Consensus 174 L~L~~N~l~g 183 (368)
|.+-+|+.+-
T Consensus 118 Ltll~Npv~~ 127 (233)
T KOG1644|consen 118 LTLLGNPVEH 127 (233)
T ss_pred eeecCCchhc
Confidence 9999998863
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.90 E-value=0.00026 Score=66.56 Aligned_cols=109 Identities=19% Similarity=0.295 Sum_probs=77.1
Q ss_pred cEEEEEecCCCCc--c--cCchhhcCCCCCCEEEeecCCCCcC----CccccCCCCCCCEEEccCCcCCCCCCcc----c
Q 017648 74 KVVNLNLKDLCLE--G--TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPND----L 141 (368)
Q Consensus 74 ~v~~L~L~~n~l~--g--~~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~g~lP~~----l 141 (368)
.+..+.+..|+|. | .+...+..+++|+.|||.+|.|+-. +...+..+++|+.|+++++.+...=-.. +
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 5677777777764 2 1334578889999999999988732 3456677888999999998886321111 1
Q ss_pred -CCCCCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCC
Q 017648 142 -GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 142 -~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
...++|++|.|.+|.++-. +-..+...+.|..|+|++|.|.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2357899999999988732 2234556788999999999983
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.0012 Score=59.82 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=27.4
Q ss_pred CCCCCCEEEccCC--cCCCCCCcccCCCCCCCEEEccCCcCCccCchh---hcCCCCCCEEeccCCCC
Q 017648 119 ELEELEVLDFGHN--NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE---IYKLQVLSESQVDEGQL 181 (368)
Q Consensus 119 ~l~~L~~L~Ls~N--~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~L~~N~l 181 (368)
.|++|+.|.++.| +.++.++...-.+++|++|+|++|++. . +.. +..+.+|..|++.+|.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCc
Confidence 4445555555555 333333333333455555555555544 1 111 23344455555555543
No 52
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=96.58 E-value=0.0047 Score=51.33 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=5.4
Q ss_pred hheeeecCCc
Q 017648 329 IYLCRCNKVS 338 (368)
Q Consensus 329 ~~~~r~rk~~ 338 (368)
|++|+|+||+
T Consensus 71 f~~c~r~kkt 80 (154)
T PF04478_consen 71 FIFCIRRKKT 80 (154)
T ss_pred eeEEEecccC
Confidence 4555555554
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00068 Score=62.64 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=37.7
Q ss_pred cEEEEEecCCCCcc--cCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCC-CCcccCCCCCCCEE
Q 017648 74 KVVNLNLKDLCLEG--TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTIL 150 (368)
Q Consensus 74 ~v~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~-lP~~l~~l~~L~~L 150 (368)
+|..|||.+|.|+. .+..-+.+|++|++|+|+.|.+...|-..-..+.+|++|.|.+..+... .-..+.+++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 45555555555542 2333345555555555555555533221112344555555555544321 11223344444444
Q ss_pred EccCC
Q 017648 151 LLDNN 155 (368)
Q Consensus 151 ~Ls~N 155 (368)
.++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 44444
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.28 E-value=0.0025 Score=66.84 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=34.8
Q ss_pred CCCCCEEEeecCCCCc-CCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCc-cCchhhcCCCCCCE
Q 017648 96 LTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSE 173 (368)
Q Consensus 96 L~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~ 173 (368)
|++|+.|.+.+=.|.. .+-.-..++++|..||+++.+++ .+ ..+++|++|+.|.+.+=.|.. ..=..+++|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4455555554444321 11222334455555555555554 12 334444444444444333331 11123444555555
Q ss_pred EeccCCC
Q 017648 174 SQVDEGQ 180 (368)
Q Consensus 174 L~L~~N~ 180 (368)
||++...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5554433
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00025 Score=64.83 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=55.5
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCc--ccCCCCCCCEEE
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTILL 151 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L~ 151 (368)
.|..|++-|++|+. |. ....|+.|++|.|+-|.++..-| +..+++|+.|+|..|.|. .+-+ -+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH-HH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 45555555555552 11 23556677777777777764322 556677777777777765 2221 245667777777
Q ss_pred ccCCcCCccCchh-----hcCCCCCCEEe
Q 017648 152 LDNNDFVGSLSPE-----IYKLQVLSESQ 175 (368)
Q Consensus 152 Ls~N~l~g~iP~~-----l~~l~~L~~L~ 175 (368)
|..|.-.|.-+.. +.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777666655432 33455555544
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.26 E-value=0.0027 Score=59.89 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=74.8
Q ss_pred CcEEEEEecCCCCcccCch----hhcCCCCCCEEEeecCCCCcC-------------CccccCCCCCCCEEEccCCcCCC
Q 017648 73 GKVVNLNLKDLCLEGTLAP----EIQSLTHIKSIILRNNSFSGI-------------IPEGFGELEELEVLDFGHNNFSG 135 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~----~l~~L~~L~~L~Ls~N~l~g~-------------~P~~~~~l~~L~~L~Ls~N~l~g 135 (368)
++++.|+||.|.+.-.-+. -|.++..|++|.|.||.+.-. .-.-++.-++|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 3789999999988644332 356678899999999988621 11223445678889888888862
Q ss_pred CCC-----cccCCCCCCCEEEccCCcCC--cc--CchhhcCCCCCCEEeccCCCCC
Q 017648 136 PLP-----NDLGINHSLTILLLDNNDFV--GS--LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 136 ~lP-----~~l~~l~~L~~L~Ls~N~l~--g~--iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
-+ ..+...+.|+.+.+..|.+. |. +-..+..+++|+.|||.+|-|+
T Consensus 172 -~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 172 -GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred -ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 22 22445567888888888765 21 2234677888888888888886
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.0013 Score=60.79 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=79.0
Q ss_pred CCCcceeEeCCCcEEEEEecCCCCcccCc-hhh-cCCCCCCEEEeecCCCCc--CCccccCCCCCCCEEEccCCcCCCCC
Q 017648 62 PCSWFGVECSDGKVVNLNLKDLCLEGTLA-PEI-QSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPL 137 (368)
Q Consensus 62 ~C~w~Gv~C~~~~v~~L~L~~n~l~g~~p-~~l-~~L~~L~~L~Ls~N~l~g--~~P~~~~~l~~L~~L~Ls~N~l~g~l 137 (368)
.|+..||.-- +.+..|.|.+..|...=. ..| ...+.+++|||.+|.++. .|-..+.+|+.|+.|+|+.|.++..|
T Consensus 35 g~s~~~v~s~-ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I 113 (418)
T KOG2982|consen 35 GLSYLGVSSL-RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI 113 (418)
T ss_pred ccceeeeccc-cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc
Confidence 4555555421 223345566665542111 112 235789999999999983 23344568999999999999998544
Q ss_pred CcccCCCCCCCEEEccCCcCCc-cCchhhcCCCCCCEEeccCCCC
Q 017648 138 PNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 138 P~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~l 181 (368)
-..-..+.+|+.|-|.+..+.- ..-..+..++.++.|+++.|++
T Consensus 114 ~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 114 KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 3222456789999999888763 3344567888899999999954
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.0023 Score=58.02 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=67.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecC--CCCcCCccccCCCCCCCEEEccCCcCCCCCCcc---cCCCCCCC
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNN--SFSGIIPEGFGELEELEVLDFGHNNFSGPLPND---LGINHSLT 148 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N--~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~---l~~l~~L~ 148 (368)
.+..|++.+.+++. + ..+..|++|+.|+++.| ...+.++--...+++|++|+|+.|++.. +.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 45666666666652 2 24677889999999999 5555555555567999999999999973 333 44667888
Q ss_pred EEEccCCcCCccCc---hhhcCCCCCCEEec
Q 017648 149 ILLLDNNDFVGSLS---PEIYKLQVLSESQV 176 (368)
Q Consensus 149 ~L~Ls~N~l~g~iP---~~l~~l~~L~~L~L 176 (368)
.||+.+|.-+..-- ..+.-+++|.+|+-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 99999887664211 12344567766653
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.19 E-value=0.013 Score=57.45 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=57.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeec-CCCCcCCccccCCCCCCCEEEccCC-cCCCCCCcccCCCCCCCEEE
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHN-NFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~~~~l~~L~~L~Ls~N-~l~g~lP~~l~~l~~L~~L~ 151 (368)
.++.|+++++.|+ .+| .+. .+|++|++++ +.++ .+|..+. .+|++|++++| .+. .+|.. |+.|+
T Consensus 53 ~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLE 118 (426)
T ss_pred CCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccc------cceEE
Confidence 5678888888777 455 222 4688888877 4443 5665442 57888888887 443 45543 55556
Q ss_pred ccCCcCC--ccCchhhcCC------------------CCCCEEeccCCCCC
Q 017648 152 LDNNDFV--GSLSPEIYKL------------------QVLSESQVDEGQLS 182 (368)
Q Consensus 152 Ls~N~l~--g~iP~~l~~l------------------~~L~~L~L~~N~l~ 182 (368)
+..|... +.+|..+..| .+|++|++++|...
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 6555431 3455544332 36777777776643
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.15 E-value=0.0022 Score=67.18 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=81.9
Q ss_pred CcEEEEEecCCCCcc-cCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCC-CCCcccCCCCCCCEE
Q 017648 73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTIL 150 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L 150 (368)
..+++|.+.+-.+.. .+..-..++++|..||+++.+++.. ..+++|++|+.|.+.+=.|.. ..-..+.+|++|++|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 468888888877643 2344567889999999999999843 678999999999988877752 222357789999999
Q ss_pred EccCCcCCccC--ch----hhcCCCCCCEEeccCCCCCcc
Q 017648 151 LLDNNDFVGSL--SP----EIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 151 ~Ls~N~l~g~i--P~----~l~~l~~L~~L~L~~N~l~g~ 184 (368)
|+|.......- .. .-..|++|+.||.++..+++.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99988765321 11 123589999999998887753
No 61
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.95 E-value=0.00017 Score=64.27 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=50.5
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.||++.|++. .+...|.-++.|..||++.|.+. .+|.+++.+..+..+++.+|+++ ..|.+++.++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 35666666666654 33444555566666666666665 45666666666666666666665 56666666666666666
Q ss_pred cCCcCC
Q 017648 153 DNNDFV 158 (368)
Q Consensus 153 s~N~l~ 158 (368)
-.|.|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666544
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0033 Score=34.76 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=8.9
Q ss_pred CCEEEccCCcCCccCchhh
Q 017648 147 LTILLLDNNDFVGSLSPEI 165 (368)
Q Consensus 147 L~~L~Ls~N~l~g~iP~~l 165 (368)
|++|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0035 Score=34.62 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=7.9
Q ss_pred CCEEEeecCCCCcCCcccc
Q 017648 99 IKSIILRNNSFSGIIPEGF 117 (368)
Q Consensus 99 L~~L~Ls~N~l~g~~P~~~ 117 (368)
|++|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 64
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.77 E-value=0.02 Score=36.40 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=13.6
Q ss_pred eEEEeehhHHHHHHH--HHHhhheeeecCC
Q 017648 310 IAILGGVIGGAILLV--ATVGIYLCRCNKV 337 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~--~~~~~~~~r~rk~ 337 (368)
.+|..+|+.-+++++ +++.++++|||+|
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEeccC
Confidence 456655554444444 3333455555543
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.71 E-value=0.022 Score=55.79 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=58.9
Q ss_pred CcEEEEEecC-CCCcccCchhhcCCCCCCEEEeecC-CCCcCCccccCCCCCCCEEEccCCcC--CCCCCcccCCC----
Q 017648 73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNN-SFSGIIPEGFGELEELEVLDFGHNNF--SGPLPNDLGIN---- 144 (368)
Q Consensus 73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~~P~~~~~l~~L~~L~Ls~N~l--~g~lP~~l~~l---- 144 (368)
..|+.|.+++ ++++ .+|..+. .+|+.|++++| .+. .+|. +|+.|++..|.+ -+.+|.++..|
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~ 141 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINS 141 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccc
Confidence 4688888887 4443 5555443 57888888887 444 4554 355555655543 13455544333
Q ss_pred --------------CCCCEEEccCCcCCccCchhhcCCCCCCEEeccCC
Q 017648 145 --------------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEG 179 (368)
Q Consensus 145 --------------~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N 179 (368)
.+|++|++++|... .+|..+. .+|+.|+++.|
T Consensus 142 ~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 142 YNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 37888999888765 4454433 48888998876
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.25 E-value=0.00032 Score=62.59 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=79.4
Q ss_pred hhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCC
Q 017648 91 PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQV 170 (368)
Q Consensus 91 ~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 170 (368)
.++..+...+.||++.|++- .+-..|.-++.|..||++.|.+. .+|..++.+..+..+++..|+++ ..|.+++.++.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 35788899999999999987 34556778899999999999998 78999999999999999999998 88999999999
Q ss_pred CCEEeccCCCCC
Q 017648 171 LSESQVDEGQLS 182 (368)
Q Consensus 171 L~~L~L~~N~l~ 182 (368)
++++++-+|.|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999875
No 67
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=95.19 E-value=0.012 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=13.3
Q ss_pred eEEEeehhHHHHHHH-HHHhhheee
Q 017648 310 IAILGGVIGGAILLV-ATVGIYLCR 333 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~-~~~~~~~~r 333 (368)
+.|++|||+|++.++ +|++++++|
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHH
Confidence 456666665555544 555544445
No 68
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=95.14 E-value=0.0042 Score=50.12 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=12.6
Q ss_pred eEEEeehhHHHHHHHHHHhhheeeecCCcc
Q 017648 310 IAILGGVIGGAILLVATVGIYLCRCNKVST 339 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~~~~~r~rk~~~ 339 (368)
.+|++||++|++.++ ++++|++||+|||.
T Consensus 67 ~~Ii~gv~aGvIg~I-lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII-LLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHS---
T ss_pred eehhHHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 355555555544333 33345555555553
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.00 E-value=0.018 Score=52.78 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=37.7
Q ss_pred cEEEEEecCCCCccc----CchhhcCCCCCCEEEeecCCCCc---CCc-------cccCCCCCCCEEEccCCcCCCCCCc
Q 017648 74 KVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSG---IIP-------EGFGELEELEVLDFGHNNFSGPLPN 139 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g---~~P-------~~~~~l~~L~~L~Ls~N~l~g~lP~ 139 (368)
.++.++|++|-|.-. +...|.+-.+|+..+++.-...- .++ ..+..+++|+..+||+|.|.-..|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 456666666655421 22334444445554444322210 111 1233445555555555555544443
Q ss_pred cc----CCCCCCCEEEccCCcC
Q 017648 140 DL----GINHSLTILLLDNNDF 157 (368)
Q Consensus 140 ~l----~~l~~L~~L~Ls~N~l 157 (368)
.+ ..-+.|.+|.|++|.+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCC
Confidence 32 2334555555555544
No 70
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=94.74 E-value=0.0069 Score=37.78 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=13.4
Q ss_pred eEEEeehhHHHHHHHHHHh-hheeeecC
Q 017648 310 IAILGGVIGGAILLVATVG-IYLCRCNK 336 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~-~~~~r~rk 336 (368)
++|+++|+.|.+++++.+. ..||+||.
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4566666665555553333 33444443
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.73 E-value=0.057 Score=49.68 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=72.6
Q ss_pred CcEEEEEecCCCCcccCchh----hcCCCCCCEEEeecCCCCcC----Ccc---------ccCCCCCCCEEEccCCcCCC
Q 017648 73 GKVVNLNLKDLCLEGTLAPE----IQSLTHIKSIILRNNSFSGI----IPE---------GFGELEELEVLDFGHNNFSG 135 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~----l~~L~~L~~L~Ls~N~l~g~----~P~---------~~~~l~~L~~L~Ls~N~l~g 135 (368)
.+++.++|+.|.+....|+. |.+-+.|.+|.|+||.+.-. |-. -..+-+.|++.+...|+|.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 37888888888887776654 45557788888888887521 111 1224567888888888886
Q ss_pred CCCcc-----cCCCCCCCEEEccCCcCCcc-----CchhhcCCCCCCEEeccCCCCC
Q 017648 136 PLPND-----LGINHSLTILLLDNNDFVGS-----LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 136 ~lP~~-----l~~l~~L~~L~Ls~N~l~g~-----iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
.-+.. +..-..|+.+.+.+|.+.-. +-..++.+.+|+.|||.+|-|+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 22322 11224778888888877621 1123456789999999999987
No 72
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=94.59 E-value=0.0099 Score=41.77 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=0.6
Q ss_pred EEEeehhHHHHHHHHHHhhheeeecCCc
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCNKVS 338 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~rk~~ 338 (368)
++++|+++|+++++++++++++|.|||-
T Consensus 13 avIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp ------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444544555555544455666655553
No 73
>PF15102 TMEM154: TMEM154 protein family
Probab=94.21 E-value=0.15 Score=42.27 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=15.7
Q ss_pred HHHhhheeeecCCcccccCCCCchhhhHH
Q 017648 325 ATVGIYLCRCNKVSTVKPWATGLSGQLQK 353 (368)
Q Consensus 325 ~~~~~~~~r~rk~~~~~p~~~~~~~~~~~ 353 (368)
++++++.+.||||....|-..+.+.++|.
T Consensus 74 ~vV~lv~~~kRkr~K~~~ss~gsq~~~qt 102 (146)
T PF15102_consen 74 SVVCLVIYYKRKRTKQEPSSQGSQSALQT 102 (146)
T ss_pred HHHHheeEEeecccCCCCccccccccccc
Confidence 33333334444444456777777777664
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.54 E-value=0.23 Score=39.88 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=53.5
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.+.+.. .+...-...|.++.+|+.+++.++ +...--..|.++.+|+.+.+.+ .+...-...+..+.+|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 677888875 465333445778888999998775 5533345677887899999976 4331222346668888888887
Q ss_pred CCcCCccCch-hhcCCCCCCEEeccC
Q 017648 154 NNDFVGSLSP-EIYKLQVLSESQVDE 178 (368)
Q Consensus 154 ~N~l~g~iP~-~l~~l~~L~~L~L~~ 178 (368)
.| +. .++. .+.+. +|+.+.+..
T Consensus 90 ~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cc-cc-EEchhhhcCC-CceEEEECC
Confidence 65 44 3443 34555 788887765
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.0042 Score=57.54 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=54.9
Q ss_pred CcEEEEEecCCCCcc-cCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCC-cCCCC-CCcccCCCCCCCE
Q 017648 73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN-NFSGP-LPNDLGINHSLTI 149 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N-~l~g~-lP~~l~~l~~L~~ 149 (368)
.+|+.|||++..|+. .+-.-+..+..|+.|.|.++.+...|-..+.+-.+|+.|||+.. .|+.. +.--+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357788888877763 23334566778888888888888777777777777888887753 23210 1112445666666
Q ss_pred EEccCCcCC
Q 017648 150 LLLDNNDFV 158 (368)
Q Consensus 150 L~Ls~N~l~ 158 (368)
|+|+.+.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 666655543
No 76
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.94 E-value=0.05 Score=63.70 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=50.5
Q ss_pred EccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCccccccccc-ccCcCChhHHHhhccCccccccccCCcCC
Q 017648 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILG 226 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~ 226 (368)
||++|+|+-.-+..|..+.+|+.|+|++|.|. |+|.+..+. |.............+.|..+..++|..+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~------CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~ 71 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE------CDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLL 71 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc------cccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcc
Confidence 68899998443445678899999999999876 999988766 64433222223455779988888888774
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=92.82 E-value=0.056 Score=44.45 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=14.3
Q ss_pred EEEeehhHHHHHHHHHHhhheeeecCCccccc
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCNKVSTVKP 342 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~rk~~~~~p 342 (368)
|++++|+++++++++++++++.|||+++-..|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P 33 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRRGLQP 33 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 55555554444444433333334444443344
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.80 E-value=0.071 Score=27.38 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=3.5
Q ss_pred CCEEEccCCcC
Q 017648 147 LTILLLDNNDF 157 (368)
Q Consensus 147 L~~L~Ls~N~l 157 (368)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 79
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=92.72 E-value=0.032 Score=51.95 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=0.0
Q ss_pred hhHHhhhh-ccccc
Q 017648 350 QLQKAFVT-GNYSF 362 (368)
Q Consensus 350 ~~~~~~~~-~~~~~ 362 (368)
+.|+.|++ |+|-.
T Consensus 181 ee~~~f~~KGiPvI 194 (290)
T PF05454_consen 181 EEQKTFISKGIPVI 194 (290)
T ss_dssp --------------
T ss_pred chhHHHHhcCCcee
Confidence 67889988 57754
No 80
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.16 E-value=0.011 Score=54.32 Aligned_cols=77 Identities=25% Similarity=0.248 Sum_probs=61.8
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCc--cccCCCCCCCEEEccCCcCCCCCCcc-----cCCC
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP--EGFGELEELEVLDFGHNNFSGPLPND-----LGIN 144 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~g~lP~~-----l~~l 144 (368)
...|+.|.|+-|.|+. +. .+..++.|++|+|..|.|.. +- .-+.+|++|+.|.|..|...|.-+.. +.-|
T Consensus 40 Mp~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred cccceeEEeecccccc-ch-hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 4578999999999984 32 37889999999999999973 32 34678999999999999999887754 4457
Q ss_pred CCCCEEE
Q 017648 145 HSLTILL 151 (368)
Q Consensus 145 ~~L~~L~ 151 (368)
++|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 8888775
No 81
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=91.58 E-value=0.34 Score=37.55 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=7.3
Q ss_pred eEEEeehhHHHHHH
Q 017648 310 IAILGGVIGGAILL 323 (368)
Q Consensus 310 ~~i~~~vi~~~~~~ 323 (368)
.+|++++|++++++
T Consensus 66 gaiagi~vg~~~~v 79 (96)
T PTZ00382 66 GAIAGISVAVVAVV 79 (96)
T ss_pred ccEEEEEeehhhHH
Confidence 35666555554444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.00 E-value=0.23 Score=28.28 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=9.1
Q ss_pred CCCCEEEccCCcCCccCch
Q 017648 145 HSLTILLLDNNDFVGSLSP 163 (368)
Q Consensus 145 ~~L~~L~Ls~N~l~g~iP~ 163 (368)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 4443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.00 E-value=0.23 Score=28.28 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=9.1
Q ss_pred CCCCEEEccCCcCCccCch
Q 017648 145 HSLTILLLDNNDFVGSLSP 163 (368)
Q Consensus 145 ~~L~~L~Ls~N~l~g~iP~ 163 (368)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 4443
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.59 E-value=0.94 Score=36.26 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=51.0
Q ss_pred hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCch-hhcCCCC
Q 017648 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP-EIYKLQV 170 (368)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~ 170 (368)
.|.+..+|+.+.+.. .+...-...|..+++|+.+.+.++ +...--..+.++.+|+.+.+.+ .+. .++. .+..+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 467778999999875 566444566888989999999886 6533334577777899999976 444 3333 4566899
Q ss_pred CCEEeccCC
Q 017648 171 LSESQVDEG 179 (368)
Q Consensus 171 L~~L~L~~N 179 (368)
|+.+++..|
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 999999765
No 85
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=89.54 E-value=0.28 Score=42.66 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=13.6
Q ss_pred eEEEeehhHHHHHHHHHHh-hhe
Q 017648 310 IAILGGVIGGAILLVATVG-IYL 331 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~-~~~ 331 (368)
++|+++||++|++++++++ +++
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~C 100 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFCC 100 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhhee
Confidence 5677777777666664433 443
No 86
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=89.08 E-value=0.4 Score=48.83 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=17.4
Q ss_pred eEEEeehhHHHHHHH-HHHhhheeeecCCc
Q 017648 310 IAILGGVIGGAILLV-ATVGIYLCRCNKVS 338 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~-~~~~~~~~r~rk~~ 338 (368)
.||++||++-+++++ +++++|++-|||+|
T Consensus 269 lWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 799999877666666 33334444444444
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.07 E-value=0.35 Score=27.46 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=11.1
Q ss_pred CCCCCEEEccCCcCCCCCCcc
Q 017648 120 LEELEVLDFGHNNFSGPLPND 140 (368)
Q Consensus 120 l~~L~~L~Ls~N~l~g~lP~~ 140 (368)
|++|++|+|++|++. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 345666666666665 44443
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.07 E-value=0.35 Score=27.46 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=11.1
Q ss_pred CCCCCEEEccCCcCCCCCCcc
Q 017648 120 LEELEVLDFGHNNFSGPLPND 140 (368)
Q Consensus 120 l~~L~~L~Ls~N~l~g~lP~~ 140 (368)
|++|++|+|++|++. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 345666666666665 44443
No 89
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=89.02 E-value=0.55 Score=39.22 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=18.8
Q ss_pred EEEeehhHHHHHHH-HHHhhheeeecCCcccc
Q 017648 311 AILGGVIGGAILLV-ATVGIYLCRCNKVSTVK 341 (368)
Q Consensus 311 ~i~~~vi~~~~~~~-~~~~~~~~r~rk~~~~~ 341 (368)
.|++||++|+.+.+ +++++++++.++|+..+
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 34455555544444 55568888888777544
No 90
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=88.75 E-value=0.1 Score=39.52 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=18.4
Q ss_pred EEEeehhHHHHHHHHHHh-hheeeecCCcccc
Q 017648 311 AILGGVIGGAILLVATVG-IYLCRCNKVSTVK 341 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~-~~~~r~rk~~~~~ 341 (368)
|-+.+..||+++++++++ ++|||.|+|...+
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~K~~~~ 73 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKHKTSAA 73 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhhhhHhh
Confidence 445555566666664444 7777777665433
No 91
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=88.62 E-value=0.13 Score=51.08 Aligned_cols=8 Identities=50% Similarity=0.817 Sum_probs=0.0
Q ss_pred EEeehhHH
Q 017648 312 ILGGVIGG 319 (368)
Q Consensus 312 i~~~vi~~ 319 (368)
++++|+|+
T Consensus 354 ~l~vVlgv 361 (439)
T PF02480_consen 354 LLGVVLGV 361 (439)
T ss_dssp --------
T ss_pred hHHHHHHH
Confidence 33333333
No 92
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=88.20 E-value=1.7 Score=37.81 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=10.0
Q ss_pred EeehhHHHHHHH-HHHhhhe
Q 017648 313 LGGVIGGAILLV-ATVGIYL 331 (368)
Q Consensus 313 ~~~vi~~~~~~~-~~~~~~~ 331 (368)
.+.-|||+|+++ +.+++|+
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff 179 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFF 179 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 444556666666 4444333
No 93
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=87.57 E-value=0.17 Score=37.27 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=12.7
Q ss_pred EEeehhHHHHHHH-HHHhhheeeecCC
Q 017648 312 ILGGVIGGAILLV-ATVGIYLCRCNKV 337 (368)
Q Consensus 312 i~~~vi~~~~~~~-~~~~~~~~r~rk~ 337 (368)
|++++++|+++++ +++++++|+||++
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~rr~~ 28 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT--
T ss_pred EEehHHHHHHHHHHhheeEEEEEeeEc
Confidence 3455556655555 4444555555544
No 94
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=86.57 E-value=5.9 Score=37.14 Aligned_cols=14 Identities=7% Similarity=-0.173 Sum_probs=5.3
Q ss_pred EEEeehhHHHHHHH
Q 017648 311 AILGGVIGGAILLV 324 (368)
Q Consensus 311 ~i~~~vi~~~~~~~ 324 (368)
.++++|+++++.++
T Consensus 199 ~lv~Iv~~cvaG~a 212 (341)
T PF06809_consen 199 TLVLIVVCCVAGAA 212 (341)
T ss_pred eeehhHHHHHHHHH
Confidence 33333333333333
No 95
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=0.081 Score=49.29 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=53.2
Q ss_pred CCCEEEeecCCCCcC-CccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCC-cCCcc-CchhhcCCCCCCEE
Q 017648 98 HIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN-DFVGS-LSPEIYKLQVLSES 174 (368)
Q Consensus 98 ~L~~L~Ls~N~l~g~-~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N-~l~g~-iP~~l~~l~~L~~L 174 (368)
.|++|||++..++-. +-.-+..+.+|+.|.|.++++...|-..+..-.+|+.|+|+.. .|+.. +-..+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777776532 2223456677777777777777766666776777777777754 33311 11234567777777
Q ss_pred eccCCCCC
Q 017648 175 QVDEGQLS 182 (368)
Q Consensus 175 ~L~~N~l~ 182 (368)
+|+-+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77766554
No 96
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=85.91 E-value=0.98 Score=41.77 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=9.0
Q ss_pred eEEEeehhHHHHHHH
Q 017648 310 IAILGGVIGGAILLV 324 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~ 324 (368)
+++++|+++|++++.
T Consensus 213 W~iv~g~~~G~~~L~ 227 (278)
T PF06697_consen 213 WKIVVGVVGGVVLLG 227 (278)
T ss_pred EEEEEEehHHHHHHH
Confidence 344666666666655
No 97
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=85.55 E-value=1.2 Score=35.13 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=10.2
Q ss_pred EEEeehhHHHHHHHHH
Q 017648 311 AILGGVIGGAILLVAT 326 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~ 326 (368)
.++.+||||..++.++
T Consensus 84 ~aLp~VIGGLcaL~La 99 (126)
T PF03229_consen 84 FALPLVIGGLCALTLA 99 (126)
T ss_pred cchhhhhhHHHHHHHH
Confidence 4667777776665533
No 98
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=84.65 E-value=0.44 Score=35.63 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=21.6
Q ss_pred EeehhHHHHHHHHHHhhheeeecCCcccccCCCCchh
Q 017648 313 LGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLSG 349 (368)
Q Consensus 313 ~~~vi~~~~~~~~~~~~~~~r~rk~~~~~p~~~~~~~ 349 (368)
...||+++++++++..++||.+|||+ -.|-+.-.-|
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrs-RrPIYrPvI~ 71 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRS-RRPIYRPVIG 71 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc-cCCccccccc
Confidence 34555665555555556777766665 4676665555
No 99
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=84.35 E-value=0.88 Score=35.26 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=19.5
Q ss_pred CCCceEEEeehhHHHHHHHHHHhhheeeecC
Q 017648 306 SSKHIAILGGVIGGAILLVATVGIYLCRCNK 336 (368)
Q Consensus 306 ~~~~~~i~~~vi~~~~~~~~~~~~~~~r~rk 336 (368)
......|.+++++++..++.+++|++.+|||
T Consensus 65 ~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 65 TGAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred cccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 3445678888787777777555554444443
No 100
>PF15069 FAM163: FAM163 family
Probab=83.34 E-value=0.81 Score=37.73 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=14.9
Q ss_pred eEEEeehhHHHHHHHHHHhhheee
Q 017648 310 IAILGGVIGGAILLVATVGIYLCR 333 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~~~~~r 333 (368)
++|.+||.++++++.++++++.||
T Consensus 6 vVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHHHh
Confidence 566666666666666666555555
No 101
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=83.31 E-value=4.2 Score=34.68 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=2.8
Q ss_pred HHHhhhe
Q 017648 325 ATVGIYL 331 (368)
Q Consensus 325 ~~~~~~~ 331 (368)
++++|++
T Consensus 108 ~i~yfvi 114 (163)
T PF06679_consen 108 AILYFVI 114 (163)
T ss_pred HHHHHHH
Confidence 3344433
No 102
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=82.39 E-value=3.1 Score=36.38 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=15.3
Q ss_pred CceEEEeehhHHHHHHHHHHhhheeeecCCc
Q 017648 308 KHIAILGGVIGGAILLVATVGIYLCRCNKVS 338 (368)
Q Consensus 308 ~~~~i~~~vi~~~~~~~~~~~~~~~r~rk~~ 338 (368)
+..++++++-.++++++++++++++++||++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeeccce
Confidence 3345555554444444455554444455444
No 103
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=82.23 E-value=1.2 Score=46.43 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=10.9
Q ss_pred EEeehhHHHHHHH-HHHh-hheeeec
Q 017648 312 ILGGVIGGAILLV-ATVG-IYLCRCN 335 (368)
Q Consensus 312 i~~~vi~~~~~~~-~~~~-~~~~r~r 335 (368)
..++|+|.+++++ ++++ ++++|||
T Consensus 846 t~~~i~g~i~iiv~LaAla~lLrRRr 871 (872)
T COG3889 846 TGGGICGPIVIIVGLAALALLLRRRR 871 (872)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhc
Confidence 3445555543444 3333 5555554
No 104
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=81.96 E-value=2.2 Score=40.34 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=17.0
Q ss_pred eEEEeehhHHHHHHHHHHhhheeeec
Q 017648 310 IAILGGVIGGAILLVATVGIYLCRCN 335 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~~~~~r~r 335 (368)
..|+..|+|+++++++++.++..|||
T Consensus 440 tTIlwTVaGVvIAiVALV~l~~V~rr 465 (465)
T TIGR03154 440 TTLYVTIIGVVIAIVALVILYVVFRR 465 (465)
T ss_pred eeEEEEeehhHHHHHHHhheeEEecC
Confidence 46677777777777766666555554
No 105
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=81.37 E-value=0.97 Score=39.90 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCceEEEeehhHHHHHHHHHHhhheeeec
Q 017648 307 SKHIAILGGVIGGAILLVATVGIYLCRCN 335 (368)
Q Consensus 307 ~~~~~i~~~vi~~~~~~~~~~~~~~~r~r 335 (368)
.-.++|++|++++++++++++++-.||.+
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR~CRq~ 66 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVRYCRQS 66 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHHHHhhc
Confidence 33489999999999999988888877733
No 106
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=80.81 E-value=3.7 Score=38.48 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=20.2
Q ss_pred CCCCCceEEEeehhHHHHHHHHHHh-hheeeec
Q 017648 304 GSSSKHIAILGGVIGGAILLVATVG-IYLCRCN 335 (368)
Q Consensus 304 ~~~~~~~~i~~~vi~~~~~~~~~~~-~~~~r~r 335 (368)
+.....+.|++.+++|++.++++.+ ||--+|.
T Consensus 195 ~d~l~lv~Iv~~cvaG~aAliva~~cW~Rlqr~ 227 (341)
T PF06809_consen 195 GDGLTLVLIVVCCVAGAAALIVAGYCWYRLQRE 227 (341)
T ss_pred CCCeeeehhHHHHHHHHHHHHHhhheEEEeccc
Confidence 3444678888888888777775433 4433333
No 107
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.23 E-value=0.38 Score=26.77 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=4.8
Q ss_pred CCCEEEccCCcCC
Q 017648 146 SLTILLLDNNDFV 158 (368)
Q Consensus 146 ~L~~L~Ls~N~l~ 158 (368)
+|+.|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 108
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=78.99 E-value=0.78 Score=43.47 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.5
Q ss_pred hheeeecCCc
Q 017648 329 IYLCRCNKVS 338 (368)
Q Consensus 329 ~~~~r~rk~~ 338 (368)
.|+++|||.+
T Consensus 291 aYli~Rrr~~ 300 (306)
T PF01299_consen 291 AYLIGRRRSR 300 (306)
T ss_pred hheeEecccc
Confidence 4444444443
No 109
>PHA03265 envelope glycoprotein D; Provisional
Probab=78.65 E-value=2.8 Score=39.72 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=12.4
Q ss_pred HhhheeeecCCcccccCCCCchhhhHHhh
Q 017648 327 VGIYLCRCNKVSTVKPWATGLSGQLQKAF 355 (368)
Q Consensus 327 ~~~~~~r~rk~~~~~p~~~~~~~~~~~~~ 355 (368)
+++|+|+||||...|.=+.|+ -.+|+-|
T Consensus 366 ~il~~~~rr~k~~~k~~~~~~-~~~~~~~ 393 (402)
T PHA03265 366 VILYVCLRRKKELKKSAQNGL-TRLRSTF 393 (402)
T ss_pred HHHHHHhhhhhhhhhhhhcCC-hhhhhhh
Confidence 334555555554444333332 2355544
No 110
>PF15345 TMEM51: Transmembrane protein 51
Probab=78.36 E-value=2 Score=38.44 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=15.0
Q ss_pred EEEeehhHHHHHHHHHHhhheeeecCCcc
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCNKVST 339 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~rk~~~ 339 (368)
+.++.|.+|++++++.+|+-++.|||++.
T Consensus 60 VAyVLVG~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 60 VAYVLVGSGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444555555666665555555543
No 111
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.65 E-value=2.7 Score=24.17 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=6.9
Q ss_pred CCCCEEEccCCcCC
Q 017648 121 EELEVLDFGHNNFS 134 (368)
Q Consensus 121 ~~L~~L~Ls~N~l~ 134 (368)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 112
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=74.58 E-value=3.5 Score=36.36 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=12.4
Q ss_pred EEEeehhHHHHHHH-HH-HhhheeeecCC
Q 017648 311 AILGGVIGGAILLV-AT-VGIYLCRCNKV 337 (368)
Q Consensus 311 ~i~~~vi~~~~~~~-~~-~~~~~~r~rk~ 337 (368)
.+|+.|+.|.++++ ++ .++|+|++||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 45555554533443 33 33566655533
No 113
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.42 E-value=2.1 Score=24.65 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=10.1
Q ss_pred CCCEEEccCCcCCccCch
Q 017648 146 SLTILLLDNNDFVGSLSP 163 (368)
Q Consensus 146 ~L~~L~Ls~N~l~g~iP~ 163 (368)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 4443
No 114
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=73.51 E-value=1.1 Score=42.04 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=8.5
Q ss_pred eEEEeehhHHHHHHHHHHh
Q 017648 310 IAILGGVIGGAILLVATVG 328 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~ 328 (368)
++|++.|++.++.++++++
T Consensus 256 t~I~aSiiaIliIVLIMvI 274 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVI 274 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555544444443333
No 115
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=72.73 E-value=0.85 Score=47.83 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=11.6
Q ss_pred ceEEEeehhHHHHHHH-HHHhh
Q 017648 309 HIAILGGVIGGAILLV-ATVGI 329 (368)
Q Consensus 309 ~~~i~~~vi~~~~~~~-~~~~~ 329 (368)
+++++.+|.||.++++ +++|+
T Consensus 271 HT~fLl~ILG~~~livl~lL~v 292 (807)
T PF10577_consen 271 HTVFLLAILGGTALIVLILLCV 292 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655555 44443
No 116
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=72.66 E-value=1.4 Score=36.13 Aligned_cols=25 Identities=8% Similarity=0.014 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhhheeeecCCcccc
Q 017648 317 IGGAILLVATVGIYLCRCNKVSTVK 341 (368)
Q Consensus 317 i~~~~~~~~~~~~~~~r~rk~~~~~ 341 (368)
++++|++++++++++++++||+..+
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444455557778888777543
No 117
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=70.62 E-value=2 Score=34.64 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=0.9
Q ss_pred ceEEEeehhHHHHHHH
Q 017648 309 HIAILGGVIGGAILLV 324 (368)
Q Consensus 309 ~~~i~~~vi~~~~~~~ 324 (368)
..|.+.+.+.++++++
T Consensus 77 l~~pi~~sal~v~lVl 92 (129)
T PF12191_consen 77 LLWPILGSALSVVLVL 92 (129)
T ss_dssp SS--------------
T ss_pred eehhhhhhHHHHHHHH
Confidence 3566666666655555
No 118
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=70.35 E-value=2.1 Score=31.80 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=12.7
Q ss_pred eEEEeehhHHHHHHHHHHh
Q 017648 310 IAILGGVIGGAILLVATVG 328 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~ 328 (368)
.|+++++.+|+++++++++
T Consensus 15 ~~yyiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVC 33 (87)
T ss_pred eeeHHHhhccHHHHHHHHH
Confidence 5777777777777774443
No 119
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=70.30 E-value=1.4 Score=36.21 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=15.7
Q ss_pred EEEeehhHHHHHHH-HHHhhheeeecCCcc
Q 017648 311 AILGGVIGGAILLV-ATVGIYLCRCNKVST 339 (368)
Q Consensus 311 ~i~~~vi~~~~~~~-~~~~~~~~r~rk~~~ 339 (368)
..+.++++.+++++ +++.+++|-+||||.
T Consensus 30 hm~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 30 HMYTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34444444444444 444477776666664
No 120
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=68.89 E-value=3.3 Score=34.17 Aligned_cols=13 Identities=15% Similarity=0.651 Sum_probs=7.0
Q ss_pred EEeehhHHHHHHH
Q 017648 312 ILGGVIGGAILLV 324 (368)
Q Consensus 312 i~~~vi~~~~~~~ 324 (368)
.++||++|+|+++
T Consensus 62 AIaGIVfgiVfim 74 (155)
T PF10873_consen 62 AIAGIVFGIVFIM 74 (155)
T ss_pred eeeeeehhhHHHH
Confidence 3445555555555
No 121
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=68.81 E-value=1.6 Score=43.50 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred ceEEEeehhHHHHHHHHHHhhheeeec
Q 017648 309 HIAILGGVIGGAILLVATVGIYLCRCN 335 (368)
Q Consensus 309 ~~~i~~~vi~~~~~~~~~~~~~~~r~r 335 (368)
..++++|++++++++++++++++++||
T Consensus 354 ~l~vVlgvavlivVv~viv~vc~~~rr 380 (439)
T PF02480_consen 354 LLGVVLGVAVLIVVVGVIVWVCLRCRR 380 (439)
T ss_dssp ---------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhheeeeehh
Confidence 356666666676666655554443333
No 122
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=68.40 E-value=1.7 Score=45.68 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=32.6
Q ss_pred CCceEEEeehhHHHHHHHHHHhhheeeecCCcccccCCCCch
Q 017648 307 SKHIAILGGVIGGAILLVATVGIYLCRCNKVSTVKPWATGLS 348 (368)
Q Consensus 307 ~~~~~i~~~vi~~~~~~~~~~~~~~~r~rk~~~~~p~~~~~~ 348 (368)
.-..+|+++.+..+++++.++++||+||+.+...+-|+..++
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc~~~r~~~~~~~l~ 314 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKCLKPRQRHRKLTLS 314 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccc
Confidence 344789999999999999888999888776666666665443
No 123
>PHA03291 envelope glycoprotein I; Provisional
Probab=68.20 E-value=42 Score=32.14 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.3
Q ss_pred eeecCC
Q 017648 332 CRCNKV 337 (368)
Q Consensus 332 ~r~rk~ 337 (368)
||||++
T Consensus 314 ~rRr~r 319 (401)
T PHA03291 314 CRRRRR 319 (401)
T ss_pred hhcccC
Confidence 344333
No 124
>PTZ00046 rifin; Provisional
Probab=68.01 E-value=2.4 Score=40.67 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=13.9
Q ss_pred eEEEeehhHHHHHHHHHHh--hheeeecCCc
Q 017648 310 IAILGGVIGGAILLVATVG--IYLCRCNKVS 338 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~--~~~~r~rk~~ 338 (368)
++|++.|++.++.+++.|+ ++++.|||+|
T Consensus 315 taIiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 4566655554444443333 4445555544
No 125
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=67.41 E-value=2.5 Score=40.44 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=13.8
Q ss_pred eEEEeehhHHHHHHHHHHh--hheeeecCCc
Q 017648 310 IAILGGVIGGAILLVATVG--IYLCRCNKVS 338 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~--~~~~r~rk~~ 338 (368)
++|++.|++.++.+++.++ ++++.|||+|
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3555555544444443333 4445555544
No 126
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.11 E-value=4.2 Score=23.59 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=7.0
Q ss_pred CCCEEEeecCCCC
Q 017648 98 HIKSIILRNNSFS 110 (368)
Q Consensus 98 ~L~~L~Ls~N~l~ 110 (368)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 127
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=65.45 E-value=28 Score=30.36 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=17.0
Q ss_pred CCCCceEEEeehhHHHHHHHHHHh-hhee
Q 017648 305 SSSKHIAILGGVIGGAILLVATVG-IYLC 332 (368)
Q Consensus 305 ~~~~~~~i~~~vi~~~~~~~~~~~-~~~~ 332 (368)
+++...-+++|||....++.|++. +-+|
T Consensus 156 s~FD~~SFiGGIVL~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 156 STFDAASFIGGIVLTLGVLAIIFFLYKFC 184 (186)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 334445678888877777775544 4444
No 128
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=64.63 E-value=2.2 Score=39.97 Aligned_cols=8 Identities=38% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEEeehhH
Q 017648 311 AILGGVIG 318 (368)
Q Consensus 311 ~i~~~vi~ 318 (368)
.|.++||+
T Consensus 149 ~IpaVVI~ 156 (290)
T PF05454_consen 149 FIPAVVIA 156 (290)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 34334333
No 129
>PTZ00234 variable surface protein Vir12; Provisional
Probab=61.38 E-value=14 Score=36.73 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=8.3
Q ss_pred ehhHHHHHHHHHHhhhe
Q 017648 315 GVIGGAILLVATVGIYL 331 (368)
Q Consensus 315 ~vi~~~~~~~~~~~~~~ 331 (368)
+|+|++|+-.++++||.
T Consensus 367 iim~~ailGtifFlfyy 383 (433)
T PTZ00234 367 SIVGASIIGVLVFLFFF 383 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44444444445555544
No 130
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=60.66 E-value=3.9 Score=29.26 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=17.1
Q ss_pred EEEeehhHHHHHHHHHHh--hheeeec
Q 017648 311 AILGGVIGGAILLVATVG--IYLCRCN 335 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~--~~~~r~r 335 (368)
|.++||++++++.++..+ +|+.+|+
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIKE 59 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhhH
Confidence 778888888877775444 6665444
No 131
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=60.59 E-value=22 Score=26.96 Aligned_cols=8 Identities=0% Similarity=0.231 Sum_probs=3.1
Q ss_pred heeeecCC
Q 017648 330 YLCRCNKV 337 (368)
Q Consensus 330 ~~~r~rk~ 337 (368)
++++-||.
T Consensus 64 lv~KAkrq 71 (91)
T PF01708_consen 64 LVLKAKRQ 71 (91)
T ss_pred heeeeccC
Confidence 33443333
No 132
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=59.69 E-value=18 Score=28.15 Aligned_cols=11 Identities=18% Similarity=0.141 Sum_probs=5.9
Q ss_pred hheeeecCCcc
Q 017648 329 IYLCRCNKVST 339 (368)
Q Consensus 329 ~~~~r~rk~~~ 339 (368)
|++.|.|+++.
T Consensus 84 FVILRer~~~~ 94 (101)
T PF06024_consen 84 FVILRERQKSI 94 (101)
T ss_pred EEEEecccccc
Confidence 44456665543
No 133
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=56.40 E-value=4.6 Score=39.96 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=46.4
Q ss_pred hhhcCCCCCCEEEeecC-CCCcCCc----cccCCCCCCCEEEccCCc-CCCCCCcccCC-CCCCCEEEccCCc-CCcc-C
Q 017648 91 PEIQSLTHIKSIILRNN-SFSGIIP----EGFGELEELEVLDFGHNN-FSGPLPNDLGI-NHSLTILLLDNND-FVGS-L 161 (368)
Q Consensus 91 ~~l~~L~~L~~L~Ls~N-~l~g~~P----~~~~~l~~L~~L~Ls~N~-l~g~lP~~l~~-l~~L~~L~Ls~N~-l~g~-i 161 (368)
........|+.|+++++ ......+ .....+.+|+.|++++.. ++...-..+.. +++|+.|.+.++. ++.. +
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 34555677777777652 1111111 123345677777777766 43222222222 5677777765554 3311 1
Q ss_pred chhhcCCCCCCEEeccCCCC
Q 017648 162 SPEIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 162 P~~l~~l~~L~~L~L~~N~l 181 (368)
-.-...+++|++|+++++..
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHhcCcccEEeeecCcc
Confidence 11223566677777776554
No 134
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.26 E-value=1.4 Score=38.93 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=16.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecC
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNN 107 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N 107 (368)
.|+.+|-++..|.+.=-..+.+++.|+.|.+.+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3566666666555332233444444554444443
No 135
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=55.82 E-value=12 Score=22.40 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=3.4
Q ss_pred hheeeecC
Q 017648 329 IYLCRCNK 336 (368)
Q Consensus 329 ~~~~r~rk 336 (368)
++..||||
T Consensus 26 ~~~~~rk~ 33 (34)
T TIGR01167 26 LLLRKRKK 33 (34)
T ss_pred HHheeccc
Confidence 44444443
No 136
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=55.53 E-value=8.3 Score=33.11 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=14.4
Q ss_pred eEEEeehhHHHHHHHH-HHh-hheeeecC
Q 017648 310 IAILGGVIGGAILLVA-TVG-IYLCRCNK 336 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~-~~~-~~~~r~rk 336 (368)
..+|++||.+++++++ +|. ++-+.|||
T Consensus 114 ~g~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 114 AGTIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777766666653 333 44444443
No 137
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=55.23 E-value=2.3 Score=34.42 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=22.0
Q ss_pred EEEeehhHHHHHHHHHHhhheeeecCCcccc
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCNKVSTVK 341 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~rk~~~~~ 341 (368)
..+++||.|+++.++++++++.++-||...|
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456667777777777778889999888655
No 138
>PTZ00370 STEVOR; Provisional
Probab=55.16 E-value=2.7 Score=38.94 Aligned_cols=7 Identities=14% Similarity=0.591 Sum_probs=4.2
Q ss_pred ccCCCCc
Q 017648 341 KPWATGL 347 (368)
Q Consensus 341 ~p~~~~~ 347 (368)
..||-|.
T Consensus 284 ~swkhe~ 290 (296)
T PTZ00370 284 NSWKHEC 290 (296)
T ss_pred chhHHHH
Confidence 3677654
No 139
>PHA03282 envelope glycoprotein E; Provisional
Probab=55.12 E-value=16 Score=36.17 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=6.3
Q ss_pred EEeehhHHHHHHH
Q 017648 312 ILGGVIGGAILLV 324 (368)
Q Consensus 312 i~~~vi~~~~~~~ 324 (368)
-+++|.|+++.+.
T Consensus 409 rl~~vlGaalgLa 421 (540)
T PHA03282 409 RLVGVLGAALGLA 421 (540)
T ss_pred hhHHHHHHHHHHH
Confidence 3455555544444
No 140
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=54.88 E-value=11 Score=37.08 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=8.6
Q ss_pred eEEEeehhHHHHHHHHHHh
Q 017648 310 IAILGGVIGGAILLVATVG 328 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~ 328 (368)
.+|++|.|++||||-.+|.
T Consensus 367 gaIaGIsvavvvvVgglvG 385 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVG 385 (397)
T ss_pred cceeeeeehhHHHHHHHHH
Confidence 3555554444444434444
No 141
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=51.95 E-value=7.9 Score=36.66 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhheeeecCCcc
Q 017648 318 GGAILLVATVGIYLCRCNKVST 339 (368)
Q Consensus 318 ~~~~~~~~~~~~~~~r~rk~~~ 339 (368)
+|++++.+++++++...-.+|.
T Consensus 277 VG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 277 VGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHhheeEecc
Confidence 3333333333344444444443
No 142
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=51.81 E-value=19 Score=35.83 Aligned_cols=10 Identities=20% Similarity=0.009 Sum_probs=6.1
Q ss_pred eEEEeehhHH
Q 017648 310 IAILGGVIGG 319 (368)
Q Consensus 310 ~~i~~~vi~~ 319 (368)
.+.|.||...
T Consensus 33 F~~Y~G~p~~ 42 (465)
T PF01690_consen 33 FIGYEGVPQT 42 (465)
T ss_pred eEEEecccce
Confidence 5667776533
No 143
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.80 E-value=17 Score=34.05 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=6.3
Q ss_pred CCcEEEEEec
Q 017648 72 DGKVVNLNLK 81 (368)
Q Consensus 72 ~~~v~~L~L~ 81 (368)
.|.|..|...
T Consensus 36 ~G~V~~l~~~ 45 (281)
T PF12768_consen 36 SGTVTDLQWA 45 (281)
T ss_pred eEEEEEEEEe
Confidence 3567777754
No 144
>PF15050 SCIMP: SCIMP protein
Probab=48.92 E-value=2.8 Score=33.36 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=4.4
Q ss_pred cccccCCC
Q 017648 338 STVKPWAT 345 (368)
Q Consensus 338 ~~~~p~~~ 345 (368)
+..|||+.
T Consensus 42 eiakp~k~ 49 (133)
T PF15050_consen 42 EIAKPLKQ 49 (133)
T ss_pred eeccchhh
Confidence 44566654
No 145
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.87 E-value=32 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=12.7
Q ss_pred CCceEEEeehhHHHHHHHHH
Q 017648 307 SKHIAILGGVIGGAILLVAT 326 (368)
Q Consensus 307 ~~~~~i~~~vi~~~~~~~~~ 326 (368)
.....|+..||+++++++++
T Consensus 10 lnPGlIVLlvV~g~ll~flv 29 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLV 29 (69)
T ss_pred CCCCeEEeehHHHHHHHHHH
Confidence 33457777777776666633
No 146
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=47.94 E-value=14 Score=28.69 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=9.8
Q ss_pred eEEEeehhHHHHHHH
Q 017648 310 IAILGGVIGGAILLV 324 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~ 324 (368)
+.+++||+++++++-
T Consensus 17 W~~LVGVv~~al~~S 31 (102)
T PF15176_consen 17 WPFLVGVVVTALVTS 31 (102)
T ss_pred cHhHHHHHHHHHHHH
Confidence 566677776666655
No 147
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=46.75 E-value=23 Score=23.19 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=12.0
Q ss_pred EEEeehhHHHHHHHHHHhhhe
Q 017648 311 AILGGVIGGAILLVATVGIYL 331 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~ 331 (368)
..++.|+.|++++++++.+..
T Consensus 3 l~V~~iilg~~ll~~LigiCw 23 (49)
T PF05624_consen 3 LFVVLIILGALLLLLLIGICW 23 (49)
T ss_pred EEEeHHHHHHHHHHHHHHHHH
Confidence 344555666666666666544
No 148
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.39 E-value=9.7 Score=38.66 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCCCCCEEEeecCCCCcC--CccccCCCCCCCEEEccCC--cCCCCCCcccCCC--CCCCEEEccCCcCCcc
Q 017648 95 SLTHIKSIILRNNSFSGI--IPEGFGELEELEVLDFGHN--NFSGPLPNDLGIN--HSLTILLLDNNDFVGS 160 (368)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g~--~P~~~~~l~~L~~L~Ls~N--~l~g~lP~~l~~l--~~L~~L~Ls~N~l~g~ 160 (368)
+.+.+..++|++|+|... +..--..-++|..|+|++| .+. .-.++..+ ..|+.|.|.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 345666777888877531 1111123456778888887 332 11223322 3567777778877644
No 149
>PHA03273 envelope glycoprotein C; Provisional
Probab=45.43 E-value=20 Score=35.61 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=16.1
Q ss_pred EEeehhHHHHHHH-HHHhhheeeecCCcccccCCC
Q 017648 312 ILGGVIGGAILLV-ATVGIYLCRCNKVSTVKPWAT 345 (368)
Q Consensus 312 i~~~vi~~~~~~~-~~~~~~~~r~rk~~~~~p~~~ 345 (368)
.+++|++|++++. ++++..+|.++++....|.|+
T Consensus 449 sivaV~~g~~a~g~~ilitalC~y~s~~~~~~~~~ 483 (486)
T PHA03273 449 SIIAVTCGAAALALVVLITAVCFYCSKPSQAPYKK 483 (486)
T ss_pred EehHHHHHHHHHHHHHheEEEEEEecCcccCCccc
Confidence 3335555554443 334434444434444677654
No 150
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=43.37 E-value=12 Score=27.60 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=13.8
Q ss_pred EEEeehhHH-HHHHHHHHh-hhee-eecCCcc
Q 017648 311 AILGGVIGG-AILLVATVG-IYLC-RCNKVST 339 (368)
Q Consensus 311 ~i~~~vi~~-~~~~~~~~~-~~~~-r~rk~~~ 339 (368)
..++||+.+ +++-++|++ +|.| |.||+++
T Consensus 34 g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~ 65 (79)
T PF07213_consen 34 GLLAGIVAADAVLTLLIVLVVYYCARPRRRPT 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 345566555 444443333 4444 5554443
No 151
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=43.18 E-value=5.5 Score=33.35 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=14.4
Q ss_pred eEEEeehhHHHHHHHHHHhhheeee
Q 017648 310 IAILGGVIGGAILLVATVGIYLCRC 334 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~~~~~r~ 334 (368)
.++++++++|++++++.++.+++|+
T Consensus 118 ~~~i~~~i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIYVVLRK 142 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555555554
No 152
>PHA03281 envelope glycoprotein E; Provisional
Probab=42.90 E-value=31 Score=34.98 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=6.4
Q ss_pred ceEEEeehhHH
Q 017648 309 HIAILGGVIGG 319 (368)
Q Consensus 309 ~~~i~~~vi~~ 319 (368)
...++++++++
T Consensus 552 p~~~y~~l~~~ 562 (642)
T PHA03281 552 PFKRYAAITGG 562 (642)
T ss_pred CeEeehhhhhh
Confidence 35666666654
No 153
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=42.80 E-value=12 Score=32.27 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=11.0
Q ss_pred EEEeehhHHHHHHHHHHhhhee
Q 017648 311 AILGGVIGGAILLVATVGIYLC 332 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~ 332 (368)
.|+++|++.+++++++++-.++
T Consensus 83 gvi~~Vi~Iv~~Iv~~~Cc~c~ 104 (179)
T PF13908_consen 83 GVICGVIAIVVLIVCFCCCCCC 104 (179)
T ss_pred ehhhHHHHHHHhHhhheecccc
Confidence 4444444444555566654444
No 154
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=40.84 E-value=18 Score=21.15 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=7.5
Q ss_pred ehhHHHHHHHHHHh
Q 017648 315 GVIGGAILLVATVG 328 (368)
Q Consensus 315 ~vi~~~~~~~~~~~ 328 (368)
+|++|+++++++++
T Consensus 4 ~vi~g~llv~lLl~ 17 (29)
T PRK14750 4 SIVCGALLVLLLLG 17 (29)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666655554443
No 155
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=38.61 E-value=26 Score=35.52 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=13.6
Q ss_pred EEEeehhHHHHHHHHHHhhheeeecCCc
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCNKVS 338 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~rk~~ 338 (368)
.+++++++|++++++++-.+-+||+|||
T Consensus 16 kvl~atA~g~v~l~~lA~~lkRRr~kkk 43 (514)
T PF10265_consen 16 KVLFATAVGVVSLIFLAHYLKRRRRKKK 43 (514)
T ss_pred eeeehhHHHHHHHHHHHHHHHHhhcccc
Confidence 4566666665554333334444444444
No 156
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=38.28 E-value=9.4 Score=30.21 Aligned_cols=6 Identities=33% Similarity=0.235 Sum_probs=0.0
Q ss_pred hheeee
Q 017648 329 IYLCRC 334 (368)
Q Consensus 329 ~~~~r~ 334 (368)
|||.||
T Consensus 45 WYckRR 50 (118)
T PF14991_consen 45 WYCKRR 50 (118)
T ss_dssp ------
T ss_pred eeeeec
Confidence 444333
No 157
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.13 E-value=6.3 Score=34.93 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=54.6
Q ss_pred CCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCC-CcccC-CCCCCCEEEccCCc-CCccCchhhcCCCCCCE
Q 017648 97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL-PNDLG-INHSLTILLLDNND-FVGSLSPEIYKLQVLSE 173 (368)
Q Consensus 97 ~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~l-P~~l~-~l~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~ 173 (368)
..++.+|-++..+.+.-=+.+.+++.++.|.+.++.--+.- -+.++ -.++|+.|+|++|. ++..=-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35778888888887654556777778888877776533210 00122 24789999999874 44222245678888888
Q ss_pred EeccCCC
Q 017648 174 SQVDEGQ 180 (368)
Q Consensus 174 L~L~~N~ 180 (368)
|.+.+=.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8886543
No 158
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=36.39 E-value=10 Score=29.95 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=3.7
Q ss_pred HHHhhheee
Q 017648 325 ATVGIYLCR 333 (368)
Q Consensus 325 ~~~~~~~~r 333 (368)
+++-++.||
T Consensus 15 l~asl~~wr 23 (107)
T PF15330_consen 15 LAASLLAWR 23 (107)
T ss_pred HHHHHHHHH
Confidence 333344443
No 159
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=36.35 E-value=9.1 Score=37.14 Aligned_cols=20 Identities=25% Similarity=0.730 Sum_probs=11.1
Q ss_pred hHHHHHHH-HHHhhheeeecC
Q 017648 317 IGGAILLV-ATVGIYLCRCNK 336 (368)
Q Consensus 317 i~~~~~~~-~~~~~~~~r~rk 336 (368)
+|.+++++ .+++++++||||
T Consensus 353 ~~N~v~lllg~~~~~~~rk~k 373 (374)
T TIGR03503 353 VGNVVILLLGGIGFFVWRKKK 373 (374)
T ss_pred hhhhhhhhhheeeEEEEEEee
Confidence 34444444 445577777775
No 160
>PF14851 FAM176: FAM176 family
Probab=35.36 E-value=16 Score=30.84 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=12.8
Q ss_pred EEEeehhHHHHHHH-HHHhhheee
Q 017648 311 AILGGVIGGAILLV-ATVGIYLCR 333 (368)
Q Consensus 311 ~i~~~vi~~~~~~~-~~~~~~~~r 333 (368)
+++.||++|.++.+ ++++-+-||
T Consensus 25 YFv~gVC~GLlLtLcllV~risc~ 48 (153)
T PF14851_consen 25 YFVSGVCAGLLLTLCLLVIRISCR 48 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhheee
Confidence 44556666666666 334445563
No 161
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=35.14 E-value=31 Score=30.22 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=17.2
Q ss_pred eEEEeehhHHHHHHHHHHhhheeeecCCccccc
Q 017648 310 IAILGGVIGGAILLVATVGIYLCRCNKVSTVKP 342 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~~~~~r~rk~~~~~p 342 (368)
.|++-+||+..+++++.++.++.|-||.....|
T Consensus 63 ~WvLY~VI~VSaaVIagAVPlLLRARR~a~~ep 95 (207)
T PF10812_consen 63 PWVLYAVIGVSAAVIAGAVPLLLRARRMAQAEP 95 (207)
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 466666665555555555544444444444444
No 162
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.62 E-value=27 Score=23.17 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.9
Q ss_pred hheeeecCCc
Q 017648 329 IYLCRCNKVS 338 (368)
Q Consensus 329 ~~~~r~rk~~ 338 (368)
++.+|+++|+
T Consensus 27 ~w~~~~~~k~ 36 (49)
T PF05545_consen 27 IWAYRPRNKK 36 (49)
T ss_pred HHHHcccchh
Confidence 4445555443
No 163
>PHA03271 envelope glycoprotein C; Provisional
Probab=34.57 E-value=38 Score=33.23 Aligned_cols=11 Identities=0% Similarity=-0.251 Sum_probs=6.2
Q ss_pred hheeeecCCcc
Q 017648 329 IYLCRCNKVST 339 (368)
Q Consensus 329 ~~~~r~rk~~~ 339 (368)
.+|+++.++|-
T Consensus 477 ALCfy~S~~~~ 487 (490)
T PHA03271 477 ALCFYASGRKY 487 (490)
T ss_pred eEEEEecCCce
Confidence 45556665554
No 164
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=34.06 E-value=63 Score=28.97 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=14.4
Q ss_pred hheeeecCCcccccCCCCchhhhHHhhhh
Q 017648 329 IYLCRCNKVSTVKPWATGLSGQLQKAFVT 357 (368)
Q Consensus 329 ~~~~r~rk~~~~~p~~~~~~~~~~~~~~~ 357 (368)
+++|||+--. -|.+-...-|.+|+-|+
T Consensus 211 yr~C~k~dPg--~p~~g~~qpqsdke~vk 237 (259)
T PF07010_consen 211 YRMCWKTDPG--TPENGPDQPQSDKESVK 237 (259)
T ss_pred HHHhhcCCCC--CcccCCCCCCcccccee
Confidence 5566666444 34444444466666554
No 165
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=33.87 E-value=14 Score=31.35 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=0.0
Q ss_pred eEEEeehhHHHHHHH
Q 017648 310 IAILGGVIGGAILLV 324 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~ 324 (368)
++-++|||+|+++.+
T Consensus 128 T~tLVGIIVGVLlaI 142 (162)
T PF05808_consen 128 TVTLVGIIVGVLLAI 142 (162)
T ss_dssp ---------------
T ss_pred eeeeeeehhhHHHHH
Confidence 445555666666666
No 166
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=33.87 E-value=20 Score=27.57 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=14.9
Q ss_pred CCCceEEEeehhHHHHHHH-HHHhhheeeec
Q 017648 306 SSKHIAILGGVIGGAILLV-ATVGIYLCRCN 335 (368)
Q Consensus 306 ~~~~~~i~~~vi~~~~~~~-~~~~~~~~r~r 335 (368)
+.+...|+.+-.+.+++++ +.+.+++|-|+
T Consensus 14 sL~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333445545455555556 55555554433
No 167
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=33.17 E-value=21 Score=36.84 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=15.6
Q ss_pred eEEEeehhHHHHHHH-HHHhhheeeecC
Q 017648 310 IAILGGVIGGAILLV-ATVGIYLCRCNK 336 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~-~~~~~~~~r~rk 336 (368)
++|+++|..++++++ ++++++++|+||
T Consensus 390 t~~~~~~f~~if~iva~ii~~~L~R~rr 417 (807)
T KOG1094|consen 390 TAILIIIFVAIFLIVALIIALMLWRWRR 417 (807)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777666655555 444466666443
No 168
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=31.92 E-value=24 Score=26.31 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=5.8
Q ss_pred EEeehhHHHHHHHHHHh
Q 017648 312 ILGGVIGGAILLVATVG 328 (368)
Q Consensus 312 i~~~vi~~~~~~~~~~~ 328 (368)
+++.|+.++++++++++
T Consensus 6 i~~iialiv~~iiaIvv 22 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVV 22 (81)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333334444
No 169
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=30.59 E-value=17 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCCCCCCceEEEeehhHHHHHHHHHHhhhee
Q 017648 301 KSGGSSSKHIAILGGVIGGAILLVATVGIYLC 332 (368)
Q Consensus 301 ~~~~~~~~~~~i~~~vi~~~~~~~~~~~~~~~ 332 (368)
+++-...-.+.|++||++++.++..+++++++
T Consensus 123 k~GL~T~tLVGIIVGVLlaIG~igGIIivvvR 154 (162)
T PF05808_consen 123 KDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVR 154 (162)
T ss_dssp --------------------------------
T ss_pred cCCcceeeeeeehhhHHHHHHHHhheeeEEee
Confidence 44444556678888888887666654444443
No 170
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=30.36 E-value=13 Score=24.58 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=20.3
Q ss_pred HHHhhheeeecCCcccccCCCCchhhhHHhhhhccccccC
Q 017648 325 ATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGNYSFSG 364 (368)
Q Consensus 325 ~~~~~~~~r~rk~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 364 (368)
+++..+|..||..+... |-|+|.+....|+-|
T Consensus 14 v~~gy~~hmkrycrafr--------qdrdallear~kl~~ 45 (54)
T PF13260_consen 14 VVVGYFCHMKRYCRAFR--------QDRDALLEARNKLFR 45 (54)
T ss_pred HHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHh
Confidence 44446665666555444 788888887766644
No 171
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=30.26 E-value=2.3 Score=42.87 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=29.1
Q ss_pred EEEEEecCCCCccc----CchhhcCCCCCCEEEeecCCCC--cC--Ccccc----CCCCCCCEEEccCCcCC
Q 017648 75 VVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFS--GI--IPEGF----GELEELEVLDFGHNNFS 134 (368)
Q Consensus 75 v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~--g~--~P~~~----~~l~~L~~L~Ls~N~l~ 134 (368)
+++|++..+.+++. +...+....+|+.+|++.|.+. |. ++..+ ....++++|.|.++.++
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 44455555555432 3334555566666666666652 11 11222 23455566666655544
No 172
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=30.11 E-value=25 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=15.3
Q ss_pred eecCCcccccCCCCchhh-hHHhhhh
Q 017648 333 RCNKVSTVKPWATGLSGQ-LQKAFVT 357 (368)
Q Consensus 333 r~rk~~~~~p~~~~~~~~-~~~~~~~ 357 (368)
.+|++.--.+|..+.+.| ++-|-+-
T Consensus 20 srRvkrLErs~~~~~~eQE~hyasLq 45 (74)
T PF05083_consen 20 SRRVKRLERSWEQLSSEQELHYASLQ 45 (74)
T ss_pred HhhhhhcccchhccccccchHHHHHH
Confidence 455555567888877667 4555543
No 173
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.52 E-value=24 Score=35.92 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=34.0
Q ss_pred CcEEEEEecCCCCccc--CchhhcCCCCCCEEEeecC--CCCcCCccccCCC--CCCCEEEccCCcCCCC
Q 017648 73 GKVVNLNLKDLCLEGT--LAPEIQSLTHIKSIILRNN--SFSGIIPEGFGEL--EELEVLDFGHNNFSGP 136 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N--~l~g~~P~~~~~l--~~L~~L~Ls~N~l~g~ 136 (368)
..|..++|++|+|... +..--..-+.|..|+|++| .+.. -.++..+ ..|++|-|.+|.+...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 4577777888876521 1111222367778888887 3321 1122222 2367777788877643
No 174
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=29.07 E-value=18 Score=33.33 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred EEEeehhHHHHHHHHHHh-hheeeecCCcccccCCCCchhh
Q 017648 311 AILGGVIGGAILLVATVG-IYLCRCNKVSTVKPWATGLSGQ 350 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~-~~~~r~rk~~~~~p~~~~~~~~ 350 (368)
+++.-| ..|++|+++|+ +.+||+|++...-|+.+.....
T Consensus 227 vf~lLV-PSiILVLLaVGGLLfYr~rrRs~~e~q~~d~~~~ 266 (285)
T PF05337_consen 227 VFYLLV-PSIILVLLAVGGLLFYRRRRRSHREPQTVDSPME 266 (285)
T ss_dssp -----------------------------------------
T ss_pred cccccc-cchhhhhhhccceeeecccccccccccccCCccc
Confidence 444443 33344444444 6666666666666666554433
No 175
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=28.77 E-value=16 Score=33.88 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=8.8
Q ss_pred CcceeEeCCCcEEEEEecCCCC
Q 017648 64 SWFGVECSDGKVVNLNLKDLCL 85 (368)
Q Consensus 64 ~w~Gv~C~~~~v~~L~L~~n~l 85 (368)
+..||. |..+.|....|
T Consensus 42 nlsGi~-----vsavRlRsgSL 58 (278)
T PF06697_consen 42 NLSGIE-----VSAVRLRSGSL 58 (278)
T ss_pred cccceE-----EEEEEeecCch
Confidence 446766 44455554443
No 176
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=27.98 E-value=53 Score=32.33 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhc
Q 017648 29 NDEGLALLRLRERV 42 (368)
Q Consensus 29 ~~~~~aLl~~k~~~ 42 (368)
.+|...|+..++.+
T Consensus 28 ~~Ev~RliGv~AEl 41 (563)
T KOG1024|consen 28 LHEVLRLIGVSAEL 41 (563)
T ss_pred HHHHHHHhCcccEE
Confidence 56777777777655
No 177
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=27.56 E-value=44 Score=24.19 Aligned_cols=18 Identities=17% Similarity=-0.101 Sum_probs=8.2
Q ss_pred HHHhhheeeecCCcccccC
Q 017648 325 ATVGIYLCRCNKVSTVKPW 343 (368)
Q Consensus 325 ~~~~~~~~r~rk~~~~~p~ 343 (368)
+...++++|.+|++ .|.+
T Consensus 23 ~~~~wi~~Ra~~~~-DKT~ 40 (72)
T PF13268_consen 23 VSGIWILWRALRKK-DKTA 40 (72)
T ss_pred HHHHHHHHHHHHcC-CCcH
Confidence 33335555544443 4544
No 178
>PLN02356 phosphateglycerate kinase
Probab=27.22 E-value=42 Score=33.37 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=22.4
Q ss_pred eehhHHHHHHHHHHh-hheeeecCCcccccCCCCc
Q 017648 314 GGVIGGAILLVATVG-IYLCRCNKVSTVKPWATGL 347 (368)
Q Consensus 314 ~~vi~~~~~~~~~~~-~~~~r~rk~~~~~p~~~~~ 347 (368)
++|+.++-+++++-. +++|..||+||.||.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (423)
T PLN02356 8 GAVVAAASLLMLLSYSFLLCNSRKRKTKKPLSKKK 42 (423)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccccCcccccc
Confidence 344555555554444 8889888888888876543
No 179
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.88 E-value=61 Score=25.01 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 017648 10 LGVLFVV 16 (368)
Q Consensus 10 ~~~~~~~ 16 (368)
+++|.++
T Consensus 6 ~llL~l~ 12 (95)
T PF07172_consen 6 FLLLGLL 12 (95)
T ss_pred HHHHHHH
Confidence 3333333
No 180
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=26.58 E-value=22 Score=36.24 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=3.6
Q ss_pred CCCcce-eE
Q 017648 62 PCSWFG-VE 69 (368)
Q Consensus 62 ~C~w~G-v~ 69 (368)
-|.|.. ++
T Consensus 133 ~C~W~~tvt 141 (501)
T PF00974_consen 133 SCGWASTVT 141 (501)
T ss_dssp ---TTS-EE
T ss_pred Ccccccccc
Confidence 488887 64
No 181
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=26.53 E-value=1.8e+02 Score=32.42 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=11.9
Q ss_pred CCCceEEEeehhHHHHHHHHHHhh
Q 017648 306 SSKHIAILGGVIGGAILLVATVGI 329 (368)
Q Consensus 306 ~~~~~~i~~~vi~~~~~~~~~~~~ 329 (368)
++..+.+++||+.++++.++++++
T Consensus 1511 sssttGmVvGIvaAaaLcILilL~ 1534 (1591)
T KOG3514|consen 1511 SSSTTGMVVGIVAAAALCILILLY 1534 (1591)
T ss_pred CCCccchhhHHHHHHHHHHHHHHh
Confidence 333455666665555444444443
No 182
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=26.02 E-value=49 Score=26.90 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=6.6
Q ss_pred cCccccccccCCcC
Q 017648 212 LQINPFRNLKGRIL 225 (368)
Q Consensus 212 ~~c~~~~~~~g~~l 225 (368)
..|.-...+.|..+
T Consensus 67 ~~CrC~~GYtGeRC 80 (139)
T PHA03099 67 MYCRCSHGYTGIRC 80 (139)
T ss_pred ceeECCCCcccccc
Confidence 34444445555544
No 183
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.94 E-value=39 Score=41.03 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=17.3
Q ss_pred EecCCCCcccCchhhcCCCCCCEEEeecCCCC
Q 017648 79 NLKDLCLEGTLAPEIQSLTHIKSIILRNNSFS 110 (368)
Q Consensus 79 ~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~ 110 (368)
||++|+|+-.-+..|..|.+|+.|+|++|-|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35566665332334555666666666666554
No 184
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=25.52 E-value=27 Score=32.38 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHhhheee
Q 017648 316 VIGGAILLVATVGIYLCR 333 (368)
Q Consensus 316 vi~~~~~~~~~~~~~~~r 333 (368)
+||++++++++..|++.+
T Consensus 283 ~IG~vl~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 283 IIGGVLLIVFIGYFIFKR 300 (305)
T ss_pred HHHHHHHHHHhhheeeEe
Confidence 334444443433344433
No 185
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=25.26 E-value=47 Score=19.43 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=6.3
Q ss_pred ehhHHHHHHHHHH
Q 017648 315 GVIGGAILLVATV 327 (368)
Q Consensus 315 ~vi~~~~~~~~~~ 327 (368)
++++|+++++.++
T Consensus 4 ~vi~G~ilv~lLl 16 (29)
T PRK14748 4 GVITGVLLVFLLL 16 (29)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555333
No 186
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=25.21 E-value=2.5 Score=42.71 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=77.2
Q ss_pred CcEEEEEecCCCCc--cc--Cchhhc----CCCCCCEEEeecCCCCcC----CccccCCCCC-CCEEEccCCcCCCC---
Q 017648 73 GKVVNLNLKDLCLE--GT--LAPEIQ----SLTHIKSIILRNNSFSGI----IPEGFGELEE-LEVLDFGHNNFSGP--- 136 (368)
Q Consensus 73 ~~v~~L~L~~n~l~--g~--~p~~l~----~L~~L~~L~Ls~N~l~g~----~P~~~~~l~~-L~~L~Ls~N~l~g~--- 136 (368)
.+++.++++.|.+. |. ++..+. ...++++|+|+.+.++.. +-..+...+. +..|++.+|.+...
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~ 251 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVE 251 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHH
Confidence 57888899988874 21 223333 478899999999988732 1123445555 77799999998743
Q ss_pred -CCcccCCC-CCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCCc
Q 017648 137 -LPNDLGIN-HSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 137 -lP~~l~~l-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+...+..+ ..++.++++.|.|+.. +...+..+..++.+.+++|.+..
T Consensus 252 ~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 252 KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22334445 6789999999999853 34456677789999999998873
No 187
>PHA03283 envelope glycoprotein E; Provisional
Probab=24.91 E-value=46 Score=33.59 Aligned_cols=6 Identities=17% Similarity=0.130 Sum_probs=2.4
Q ss_pred eecCCc
Q 017648 333 RCNKVS 338 (368)
Q Consensus 333 r~rk~~ 338 (368)
|++++|
T Consensus 426 r~~~~~ 431 (542)
T PHA03283 426 RRSNRK 431 (542)
T ss_pred hhhcCC
Confidence 344444
No 188
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=24.91 E-value=45 Score=37.15 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=14.0
Q ss_pred eEEEeehhHHHHHHHHHHhh---heeeecCCc
Q 017648 310 IAILGGVIGGAILLVATVGI---YLCRCNKVS 338 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~~---~~~r~rk~~ 338 (368)
+.|+++|++|++++.+++++ +..+||+++
T Consensus 979 wiIi~svl~GLLlL~llv~~LwK~GFFKR~r~ 1010 (1030)
T KOG3637|consen 979 WIIILSVLGGLLLLALLVLLLWKCGFFKRNRK 1010 (1030)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 44455555665555544332 224555444
No 189
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.32 E-value=28 Score=23.39 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=3.7
Q ss_pred ehhHHHHHHH
Q 017648 315 GVIGGAILLV 324 (368)
Q Consensus 315 ~vi~~~~~~~ 324 (368)
|.+.++++++
T Consensus 18 GLi~A~vlfi 27 (50)
T PF02038_consen 18 GLIFAGVLFI 27 (50)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 3333333333
No 190
>PHA02902 putative IMV membrane protein; Provisional
Probab=23.90 E-value=51 Score=23.28 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=5.9
Q ss_pred hheeeecCCccccc
Q 017648 329 IYLCRCNKVSTVKP 342 (368)
Q Consensus 329 ~~~~r~rk~~~~~p 342 (368)
+|...||.|.+..|
T Consensus 20 iya~YrR~kci~sP 33 (70)
T PHA02902 20 IYAAYKRYKCIPSP 33 (70)
T ss_pred HHHHHHHhcCCCCC
Confidence 34444444443333
No 191
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=23.85 E-value=51 Score=24.88 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=13.9
Q ss_pred eEEEeehhHHHHHHH-HHHhhheeeec
Q 017648 310 IAILGGVIGGAILLV-ATVGIYLCRCN 335 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~-~~~~~~~~r~r 335 (368)
..++.+++.++++++ .++++-.+.+|
T Consensus 51 ~i~iS~ias~la~lv~t~~G~g~y~~~ 77 (85)
T TIGR01495 51 IILYSSIASGLALLVGAGVGLGYYYKK 77 (85)
T ss_pred eeehHHHHHHHHHHHHHHHHHhhhhhc
Confidence 566666666665555 44444333333
No 192
>PHA03292 envelope glycoprotein I; Provisional
Probab=23.75 E-value=1.2e+02 Score=29.47 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=6.7
Q ss_pred eEEEeehhHHHHHHHHH
Q 017648 310 IAILGGVIGGAILLVAT 326 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~ 326 (368)
.+++++-++++++++++
T Consensus 318 ~a~ivip~~~~~llll~ 334 (413)
T PHA03292 318 VAMIVIPTACVVLLLLA 334 (413)
T ss_pred EEEEEhHHHHHHHHHHH
Confidence 34443333443444433
No 193
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=22.96 E-value=60 Score=28.95 Aligned_cols=20 Identities=40% Similarity=0.350 Sum_probs=10.0
Q ss_pred ehhHHHHHHH-HHHhhheeee
Q 017648 315 GVIGGAILLV-ATVGIYLCRC 334 (368)
Q Consensus 315 ~vi~~~~~~~-~~~~~~~~r~ 334 (368)
+|++|++++. ++++..+|.+
T Consensus 190 ~Vi~g~~~~g~~~~i~alc~~ 210 (211)
T PF02124_consen 190 GVICGAGALGLLVLIAALCFY 210 (211)
T ss_pred HHHHHHHHHHHHHhhEEEEEE
Confidence 5555555444 4444455543
No 194
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=22.33 E-value=32 Score=25.86 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=14.0
Q ss_pred eEEEeehhHHHHHHH-HHHhhheeeecCC
Q 017648 310 IAILGGVIGGAILLV-ATVGIYLCRCNKV 337 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~-~~~~~~~~r~rk~ 337 (368)
..++..++.++++++ .++++..+.++|+
T Consensus 55 ~iiiS~i~s~lalli~~~~G~g~y~~~k~ 83 (84)
T PF09716_consen 55 KIIISTIASGLALLIATALGYGYYKKKKK 83 (84)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 455555555555544 4444555555443
No 195
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=22.24 E-value=70 Score=26.78 Aligned_cols=14 Identities=7% Similarity=-0.211 Sum_probs=6.0
Q ss_pred cCCCCchhhhHHhh
Q 017648 342 PWATGLSGQLQKAF 355 (368)
Q Consensus 342 p~~~~~~~~~~~~~ 355 (368)
.++.--=.|.|+..
T Consensus 40 ~ftLPkflqRRssk 53 (158)
T PF11770_consen 40 RFTLPKFLQRRSSK 53 (158)
T ss_pred ccchHHHHHhhhhh
Confidence 44333334544444
No 196
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=22.24 E-value=1.3e+02 Score=20.28 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhccCC
Q 017648 31 EGLALLRLRERVVRD 45 (368)
Q Consensus 31 ~~~aLl~~k~~~~~~ 45 (368)
-..++..||+.+.++
T Consensus 31 lG~~i~~Fk~~~~~~ 45 (51)
T PRK01470 31 LAKGLKAFKDGMKDD 45 (51)
T ss_pred HHHHHHHHHHHhccc
Confidence 356888899887533
No 197
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.64 E-value=39 Score=30.06 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=14.4
Q ss_pred eEEEeehhHHHHHHHHHHhhheeeecCCc
Q 017648 310 IAILGGVIGGAILLVATVGIYLCRCNKVS 338 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~~~~~r~rk~~ 338 (368)
.++++|.|+++.+++.+++-++..|||++
T Consensus 173 wf~~Gg~v~~~GlllGlilp~l~prRkr~ 201 (206)
T PRK10884 173 WFMYGGGVAGIGLLLGLLLPHLIPRRKRK 201 (206)
T ss_pred HHHHchHHHHHHHHHHHHhcccccccccc
Confidence 46666655555555544443444344443
No 198
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=21.43 E-value=31 Score=33.37 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=0.0
Q ss_pred eEEEeehhHHHHHHHHHHh
Q 017648 310 IAILGGVIGGAILLVATVG 328 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~ 328 (368)
+.-|.||++++ ++|-++|
T Consensus 9 VLTITgIcvaL-lVVGi~C 26 (404)
T PF02158_consen 9 VLTITGICVAL-LVVGIVC 26 (404)
T ss_dssp -------------------
T ss_pred hhhhhhhhHHH-HHHHHHH
Confidence 44555654443 3333333
No 199
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=21.26 E-value=78 Score=18.31 Aligned_cols=7 Identities=0% Similarity=-0.230 Sum_probs=2.7
Q ss_pred hheeeec
Q 017648 329 IYLCRCN 335 (368)
Q Consensus 329 ~~~~r~r 335 (368)
++..++|
T Consensus 19 ~~~~~rR 25 (27)
T TIGR03867 19 LLGFARR 25 (27)
T ss_pred hhhHHhh
Confidence 4433333
No 200
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=21.10 E-value=77 Score=31.26 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=10.8
Q ss_pred EEEeehhHHHHHHHHHHhhheeeec
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCN 335 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~r 335 (368)
.+++++|.+++++++++.+|.....
T Consensus 32 iiiGa~Vl~iIii~~~~~~Y~~~~~ 56 (416)
T PF04415_consen 32 IIIGAAVLIIIIIFIVYNIYYFLQN 56 (416)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHhhh
Confidence 3444444444444444444444433
No 201
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=20.88 E-value=70 Score=24.24 Aligned_cols=10 Identities=30% Similarity=0.065 Sum_probs=4.3
Q ss_pred HHHhhheeee
Q 017648 325 ATVGIYLCRC 334 (368)
Q Consensus 325 ~~~~~~~~r~ 334 (368)
++++++++||
T Consensus 82 ~~v~yI~~rR 91 (92)
T PF03908_consen 82 LVVLYILWRR 91 (92)
T ss_pred HHHHHHhhhc
Confidence 3344444443
Done!