Query 017648
Match_columns 368
No_of_seqs 433 out of 3484
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 4.8E-26 1.6E-30 214.8 13.5 159 26-189 2-169 (313)
2 3rgz_A Protein brassinosteroid 99.9 9.3E-24 3.2E-28 222.2 10.9 161 21-186 3-195 (768)
3 4eco_A Uncharacterized protein 99.9 1.6E-23 5.6E-28 215.9 10.8 156 28-187 28-293 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 1.3E-22 4.4E-27 215.0 10.4 154 26-187 265-535 (876)
5 4fcg_A Uncharacterized protein 99.8 1.9E-21 6.3E-26 184.7 4.7 161 24-188 21-201 (328)
6 1w8a_A SLIT protein; signaling 99.8 1.9E-18 6.6E-23 151.2 10.7 155 63-226 8-175 (192)
7 3e6j_A Variable lymphocyte rec 99.7 1.8E-17 6.2E-22 149.0 13.7 127 59-186 15-152 (229)
8 2v9t_B SLIT homolog 2 protein 99.7 2.1E-17 7.2E-22 147.7 13.8 164 63-226 11-201 (220)
9 2wfh_A SLIT homolog 2 protein 99.7 1.3E-17 4.4E-22 146.2 12.0 157 63-229 10-178 (193)
10 2o6r_A Variable lymphocyte rec 99.7 2.5E-17 8.6E-22 141.8 11.9 125 62-186 6-141 (177)
11 2o6s_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 141.4 13.0 125 62-186 6-141 (208)
12 2v70_A SLIT-2, SLIT homolog 2 99.7 4E-17 1.4E-21 145.9 9.4 164 63-226 11-202 (220)
13 3rgz_A Protein brassinosteroid 99.7 3.2E-17 1.1E-21 172.4 9.5 94 95-188 630-723 (768)
14 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-16 5.3E-21 142.1 11.8 114 72-185 56-169 (220)
15 3m19_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 142.3 11.3 110 74-183 36-145 (251)
16 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-16 3.7E-21 150.6 7.4 117 73-189 76-194 (313)
17 2v9t_B SLIT homolog 2 protein 99.6 9.7E-16 3.3E-20 136.9 11.4 118 73-196 56-173 (220)
18 4g8a_A TOLL-like receptor 4; l 99.6 4.2E-16 1.4E-20 158.8 9.8 150 73-228 469-621 (635)
19 2o6q_A Variable lymphocyte rec 99.6 2.2E-15 7.5E-20 138.5 12.6 111 74-184 38-148 (270)
20 4fcg_A Uncharacterized protein 99.6 1.5E-15 5.2E-20 143.8 11.7 113 73-187 150-271 (328)
21 2o6s_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 131.8 11.6 115 73-187 52-166 (208)
22 3g39_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 127.7 11.6 105 76-183 12-116 (170)
23 2z81_A CD282 antigen, TOLL-lik 99.6 1.2E-15 4.1E-20 153.6 9.6 125 62-187 3-141 (549)
24 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 127.0 7.8 112 73-186 17-130 (149)
25 3rfs_A Internalin B, repeat mo 99.6 4.5E-15 1.5E-19 136.6 11.9 116 72-187 84-199 (272)
26 3m19_A Variable lymphocyte rec 99.6 7.8E-15 2.7E-19 133.3 12.9 115 73-187 59-173 (251)
27 4b8c_D Glucose-repressible alc 99.6 5.6E-16 1.9E-20 161.9 5.9 111 73-187 224-334 (727)
28 3e6j_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 131.2 11.9 110 73-183 64-173 (229)
29 2r9u_A Variable lymphocyte rec 99.6 1E-14 3.6E-19 125.4 11.7 104 76-182 15-118 (174)
30 2z66_A Variable lymphocyte rec 99.6 3.1E-15 1E-19 139.7 8.9 115 73-187 126-241 (306)
31 3v47_A TOLL-like receptor 5B a 99.6 5.4E-15 1.8E-19 145.4 10.8 127 61-187 6-147 (455)
32 2ell_A Acidic leucine-rich nuc 99.6 5.4E-15 1.8E-19 125.9 9.3 112 73-186 24-137 (168)
33 4g8a_A TOLL-like receptor 4; l 99.6 8.1E-15 2.8E-19 149.3 12.2 115 73-187 52-167 (635)
34 1w8a_A SLIT protein; signaling 99.6 1E-14 3.5E-19 127.3 10.6 111 76-189 11-122 (192)
35 3rfs_A Internalin B, repeat mo 99.6 2.1E-14 7.3E-19 132.0 12.6 113 73-187 63-175 (272)
36 2xot_A Amphoterin-induced prot 99.5 1.4E-14 4.8E-19 138.9 10.5 121 63-183 18-150 (361)
37 3vq2_A TLR4, TOLL-like recepto 99.5 2.4E-14 8.2E-19 145.9 12.4 113 74-186 57-170 (606)
38 2ifg_A High affinity nerve gro 99.5 1.2E-14 4.1E-19 138.2 9.3 116 63-197 8-125 (347)
39 3v47_A TOLL-like receptor 5B a 99.5 2.1E-14 7.2E-19 141.1 11.1 112 73-184 275-386 (455)
40 1ozn_A Reticulon 4 receptor; N 99.5 1.4E-14 4.6E-19 134.0 9.2 113 73-185 105-217 (285)
41 1dce_A Protein (RAB geranylger 99.5 1.8E-14 6.2E-19 146.3 10.5 109 74-187 442-551 (567)
42 4eco_A Uncharacterized protein 99.5 5.8E-15 2E-19 152.0 6.5 123 63-186 193-347 (636)
43 2z80_A TOLL-like receptor 2, v 99.5 2.3E-14 7.7E-19 136.6 9.6 120 60-181 27-161 (353)
44 1ozn_A Reticulon 4 receptor; N 99.5 6.8E-14 2.3E-18 129.2 12.3 114 73-186 32-146 (285)
45 3vq2_A TLR4, TOLL-like recepto 99.5 1.5E-14 5.2E-19 147.3 8.5 114 73-187 424-538 (606)
46 2z62_A TOLL-like receptor 4, v 99.5 7.2E-14 2.5E-18 128.5 11.7 110 74-183 29-138 (276)
47 2wfh_A SLIT homolog 2 protein 99.5 1.3E-13 4.6E-18 120.5 12.8 107 76-186 13-119 (193)
48 2z66_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 131.0 11.0 147 73-225 150-299 (306)
49 3zyj_A Leucine-rich repeat-con 99.5 2.1E-14 7.3E-19 141.0 8.5 152 73-226 160-330 (440)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.6E-14 1.2E-18 143.7 9.7 108 73-183 52-160 (562)
51 2id5_A Lingo-1, leucine rich r 99.5 8.4E-14 2.9E-18 137.9 12.0 124 64-187 12-146 (477)
52 3zyi_A Leucine-rich repeat-con 99.5 2.5E-14 8.6E-19 141.0 8.2 153 73-227 171-342 (452)
53 3oja_B Anopheles plasmodium-re 99.5 8.2E-14 2.8E-18 142.3 12.2 109 75-183 77-185 (597)
54 1p9a_G Platelet glycoprotein I 99.5 1.4E-13 4.8E-18 128.0 12.6 113 73-187 77-189 (290)
55 2z62_A TOLL-like receptor 4, v 99.5 9.9E-14 3.4E-18 127.5 11.3 114 73-186 52-166 (276)
56 3zyj_A Leucine-rich repeat-con 99.5 1.7E-13 5.9E-18 134.6 13.5 122 65-186 45-177 (440)
57 3j0a_A TOLL-like receptor 5; m 99.5 6.7E-14 2.3E-18 148.6 11.2 113 75-187 50-166 (844)
58 1p9a_G Platelet glycoprotein I 99.5 1.3E-13 4.4E-18 128.3 11.5 117 73-196 100-216 (290)
59 2xot_A Amphoterin-induced prot 99.5 1E-13 3.5E-18 132.8 11.0 110 73-183 64-177 (361)
60 2o6q_A Variable lymphocyte rec 99.5 2.7E-13 9.3E-18 124.4 13.1 110 74-183 86-195 (270)
61 3t6q_A CD180 antigen; protein- 99.5 4.3E-14 1.5E-18 144.0 7.8 155 73-228 425-601 (606)
62 4ezg_A Putative uncharacterize 99.5 7.8E-14 2.7E-18 122.0 8.4 108 73-183 66-173 (197)
63 3zyi_A Leucine-rich repeat-con 99.5 1.7E-13 5.7E-18 135.1 11.7 121 65-185 56-187 (452)
64 1wwl_A Monocyte differentiatio 99.5 4.5E-14 1.5E-18 132.5 7.0 83 75-158 97-186 (312)
65 2ell_A Acidic leucine-rich nuc 99.5 9.6E-14 3.3E-18 118.1 8.3 109 72-182 48-160 (168)
66 3t6q_A CD180 antigen; protein- 99.5 1.6E-13 5.6E-18 139.7 11.1 117 73-189 33-150 (606)
67 1ziw_A TOLL-like receptor 3; i 99.5 2.5E-13 8.4E-18 140.4 12.1 112 74-185 50-161 (680)
68 2z63_A TOLL-like receptor 4, v 99.4 1.5E-13 5E-18 138.8 9.9 115 73-187 396-512 (570)
69 3o6n_A APL1; leucine-rich repe 99.4 3.1E-13 1.1E-17 130.4 11.7 112 74-186 46-158 (390)
70 2o6r_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 113.7 12.6 109 75-186 9-117 (177)
71 4ezg_A Putative uncharacterize 99.4 3.9E-13 1.3E-17 117.5 11.0 111 73-187 44-154 (197)
72 3g39_A Variable lymphocyte rec 99.4 3E-13 1E-17 115.7 9.9 100 63-162 9-119 (170)
73 2ft3_A Biglycan; proteoglycan, 99.4 4.2E-13 1.4E-17 126.7 11.8 122 63-187 33-167 (332)
74 2z7x_B TOLL-like receptor 1, v 99.4 1.5E-13 5.3E-18 137.4 9.0 108 73-183 21-129 (520)
75 2xwt_C Thyrotropin receptor; s 99.4 1.5E-13 5.3E-18 123.6 8.0 112 73-186 31-148 (239)
76 3oja_A Leucine-rich immune mol 99.4 2.1E-13 7.1E-18 136.1 9.6 122 62-187 108-231 (487)
77 2je0_A Acidic leucine-rich nuc 99.4 7.4E-14 2.5E-18 116.4 5.3 105 72-178 41-149 (149)
78 3oja_B Anopheles plasmodium-re 99.4 4.2E-13 1.4E-17 137.0 12.0 137 48-187 7-165 (597)
79 1xku_A Decorin; proteoglycan, 99.4 5.6E-13 1.9E-17 125.7 12.0 118 62-182 30-158 (330)
80 4ecn_A Leucine-rich repeat pro 99.4 7.6E-14 2.6E-18 147.9 5.8 122 63-186 435-589 (876)
81 2id5_A Lingo-1, leucine rich r 99.4 2.6E-13 8.8E-18 134.4 9.3 145 74-226 225-369 (477)
82 3o6n_A APL1; leucine-rich repe 99.4 8.1E-13 2.8E-17 127.5 12.0 111 73-184 69-180 (390)
83 1wwl_A Monocyte differentiatio 99.4 2.5E-13 8.5E-18 127.4 7.5 113 73-186 121-245 (312)
84 1a9n_A U2A', U2A'; complex (nu 99.4 4.2E-13 1.4E-17 115.2 8.3 108 73-186 19-129 (176)
85 2z81_A CD282 antigen, TOLL-lik 99.4 2.7E-13 9.2E-18 136.4 7.7 117 72-188 49-167 (549)
86 2z63_A TOLL-like receptor 4, v 99.4 9.4E-13 3.2E-17 132.8 11.4 114 73-186 52-166 (570)
87 1ziw_A TOLL-like receptor 3; i 99.4 7.9E-13 2.7E-17 136.6 11.0 113 74-186 26-138 (680)
88 3j0a_A TOLL-like receptor 5; m 99.4 9E-13 3.1E-17 139.9 11.0 115 73-187 73-192 (844)
89 3cvr_A Invasion plasmid antige 99.4 4.1E-13 1.4E-17 136.2 7.7 113 59-187 39-157 (571)
90 4b8c_D Glucose-repressible alc 99.4 6.7E-14 2.3E-18 146.2 0.2 113 72-187 246-359 (727)
91 2z80_A TOLL-like receptor 2, v 99.4 1E-12 3.5E-17 125.1 8.1 117 72-189 75-194 (353)
92 2xwt_C Thyrotropin receptor; s 99.4 1.2E-12 4E-17 117.8 8.0 112 73-187 55-173 (239)
93 2z7x_B TOLL-like receptor 1, v 99.3 1.6E-12 5.3E-17 130.1 9.2 112 74-187 325-461 (520)
94 1a9n_A U2A', U2A'; complex (nu 99.3 6.3E-13 2.2E-17 114.1 5.4 106 73-182 42-153 (176)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.6E-12 5.6E-17 131.5 8.9 93 94-186 350-445 (562)
96 4glp_A Monocyte differentiatio 99.3 1.2E-12 4.2E-17 122.4 7.4 109 74-182 92-210 (310)
97 4glp_A Monocyte differentiatio 99.3 6.1E-13 2.1E-17 124.5 5.0 114 73-187 117-242 (310)
98 2r9u_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 108.2 10.0 88 73-160 33-120 (174)
99 3oja_A Leucine-rich immune mol 99.3 2.1E-12 7.2E-17 128.7 7.3 110 73-184 58-184 (487)
100 1xku_A Decorin; proteoglycan, 99.3 8.1E-12 2.8E-16 117.7 10.9 110 73-186 171-280 (330)
101 3o53_A Protein LRIM1, AGAP0063 99.3 4.7E-12 1.6E-16 118.9 9.1 111 73-187 120-231 (317)
102 1h6t_A Internalin B; cell adhe 99.3 1.3E-11 4.6E-16 114.6 11.5 106 73-186 68-173 (291)
103 3o53_A Protein LRIM1, AGAP0063 99.3 7E-12 2.4E-16 117.7 9.3 106 73-182 144-250 (317)
104 1dce_A Protein (RAB geranylger 99.3 7.4E-12 2.5E-16 127.1 9.8 102 72-176 462-567 (567)
105 2ft3_A Biglycan; proteoglycan, 99.3 4.7E-12 1.6E-16 119.5 7.7 109 74-186 173-281 (332)
106 1xeu_A Internalin C; cellular 99.3 2.2E-11 7.4E-16 111.5 11.6 103 73-184 63-165 (263)
107 1h6t_A Internalin B; cell adhe 99.3 1.8E-11 6.3E-16 113.6 10.9 104 72-183 89-192 (291)
108 1xeu_A Internalin C; cellular 99.3 2.4E-11 8.1E-16 111.3 11.2 103 73-184 41-143 (263)
109 4fmz_A Internalin; leucine ric 99.2 2.4E-11 8.1E-16 115.0 11.0 108 73-186 221-328 (347)
110 1h6u_A Internalin H; cell adhe 99.2 4E-11 1.4E-15 112.2 11.8 103 73-183 63-165 (308)
111 1h6u_A Internalin H; cell adhe 99.2 2.6E-11 8.9E-16 113.5 10.4 107 72-186 84-190 (308)
112 3cvr_A Invasion plasmid antige 99.2 1.5E-11 5E-16 124.8 8.7 97 74-187 121-224 (571)
113 4fmz_A Internalin; leucine ric 99.2 1.8E-11 6.2E-16 115.8 8.3 105 72-182 242-346 (347)
114 1m9s_A Internalin B; cell inva 99.2 4.6E-11 1.6E-15 122.1 11.6 106 73-186 65-170 (605)
115 1ds9_A Outer arm dynein; leuci 99.2 8.1E-14 2.8E-18 122.0 -7.8 111 72-187 47-158 (198)
116 1ds9_A Outer arm dynein; leuci 99.2 8.9E-14 3E-18 121.8 -7.8 105 74-183 19-129 (198)
117 3bz5_A Internalin-J, INLJ; leu 99.2 6.9E-11 2.4E-15 116.8 11.6 100 74-185 65-164 (457)
118 1m9s_A Internalin B; cell inva 99.2 4.9E-11 1.7E-15 121.9 10.7 104 72-183 86-189 (605)
119 1o6v_A Internalin A; bacterial 99.2 6E-11 2.1E-15 117.2 10.4 104 73-184 243-346 (466)
120 1o6v_A Internalin A; bacterial 99.2 6.3E-11 2.2E-15 117.1 9.3 106 73-186 265-370 (466)
121 2ca6_A RAN GTPase-activating p 99.1 8.4E-12 2.9E-16 120.2 2.0 111 73-183 159-288 (386)
122 4ay9_X Follicle-stimulating ho 99.1 6.3E-11 2.2E-15 112.8 7.8 116 63-178 9-137 (350)
123 2ast_B S-phase kinase-associat 99.1 7.6E-12 2.6E-16 117.8 1.0 111 73-184 70-184 (336)
124 2ifg_A High affinity nerve gro 99.1 9.3E-11 3.2E-15 111.1 8.4 87 73-160 31-118 (347)
125 3bz5_A Internalin-J, INLJ; leu 99.1 1.6E-10 5.6E-15 114.1 9.9 101 73-184 148-248 (457)
126 3g06_A SSPH2 (leucine-rich rep 99.1 2.5E-11 8.4E-16 124.4 4.1 90 58-158 17-114 (622)
127 2ast_B S-phase kinase-associat 99.1 1.3E-11 4.3E-16 116.3 1.8 114 73-186 93-215 (336)
128 1jl5_A Outer protein YOPM; leu 99.1 2.7E-10 9.1E-15 112.5 11.3 102 73-183 131-251 (454)
129 1jl5_A Outer protein YOPM; leu 99.1 1E-10 3.6E-15 115.4 8.1 59 121-187 317-377 (454)
130 3g06_A SSPH2 (leucine-rich rep 99.1 2.7E-10 9.1E-15 116.8 10.1 81 97-186 221-301 (622)
131 2ca6_A RAN GTPase-activating p 99.0 4.4E-11 1.5E-15 115.2 2.7 113 73-185 187-319 (386)
132 3goz_A Leucine-rich repeat-con 99.0 5.3E-11 1.8E-15 113.8 3.2 113 74-186 52-184 (362)
133 3goz_A Leucine-rich repeat-con 99.0 9.9E-11 3.4E-15 111.9 3.8 111 73-183 22-152 (362)
134 4ay9_X Follicle-stimulating ho 99.0 9.6E-10 3.3E-14 104.5 8.6 108 76-186 12-121 (350)
135 1z7x_W Ribonuclease inhibitor; 98.8 2E-10 6.7E-15 112.7 -1.5 110 73-182 256-383 (461)
136 3rw6_A Nuclear RNA export fact 98.8 1.3E-10 4.3E-15 106.5 -3.3 67 118-186 167-237 (267)
137 1z7x_W Ribonuclease inhibitor; 98.8 6E-10 2.1E-14 109.2 -1.1 112 73-184 227-356 (461)
138 3un9_A NLR family member X1; l 98.7 3E-09 1E-13 102.3 2.1 109 74-182 102-224 (372)
139 3rw6_A Nuclear RNA export fact 98.7 5E-09 1.7E-13 95.9 2.2 80 94-175 167-257 (267)
140 3un9_A NLR family member X1; l 98.6 7.5E-09 2.6E-13 99.5 0.5 110 74-183 127-253 (372)
141 1io0_A Tropomodulin; LRR prote 98.5 2.2E-08 7.4E-13 86.6 1.1 111 72-182 35-164 (185)
142 3ogk_B Coronatine-insensitive 98.5 2.3E-08 7.8E-13 101.1 1.2 110 73-182 378-526 (592)
143 3sb4_A Hypothetical leucine ri 98.3 1.4E-06 4.8E-11 81.7 8.2 100 74-175 227-327 (329)
144 3ogk_B Coronatine-insensitive 98.2 7.2E-07 2.5E-11 90.1 5.2 23 160-182 284-306 (592)
145 2p1m_B Transport inhibitor res 98.1 2.6E-07 8.9E-12 93.3 -1.5 110 73-183 372-495 (594)
146 3rfe_A Platelet glycoprotein I 98.1 7.1E-06 2.4E-10 66.5 7.0 94 124-226 11-106 (130)
147 2p1m_B Transport inhibitor res 98.1 1.1E-06 3.6E-11 88.8 2.3 107 73-179 105-221 (594)
148 1io0_A Tropomodulin; LRR prote 98.0 1.9E-06 6.6E-11 74.1 1.9 96 88-183 27-137 (185)
149 2ra8_A Uncharacterized protein 97.9 2.4E-06 8.4E-11 81.5 1.9 108 73-183 172-293 (362)
150 3sb4_A Hypothetical leucine ri 97.9 1.2E-05 4.1E-10 75.3 5.7 87 95-183 224-311 (329)
151 2ra8_A Uncharacterized protein 97.5 6.2E-05 2.1E-09 71.8 4.4 109 74-182 194-320 (362)
152 3e4g_A ATP synthase subunit S, 97.4 4.9E-05 1.7E-09 64.7 2.5 34 74-107 62-95 (176)
153 3e4g_A ATP synthase subunit S, 97.4 5.7E-05 2E-09 64.3 2.3 84 97-180 61-150 (176)
154 4fdw_A Leucine rich hypothetic 97.3 0.00068 2.3E-08 65.4 8.8 105 74-182 249-358 (401)
155 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.6E-08 53.5 5.5 55 77-133 12-67 (130)
156 4fdw_A Leucine rich hypothetic 96.8 0.0029 1E-07 60.9 8.4 106 73-181 271-382 (401)
157 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00044 1.5E-08 59.9 1.7 110 72-181 40-169 (197)
158 2l2t_A Receptor tyrosine-prote 96.3 0.00053 1.8E-08 43.7 -0.4 20 309-328 9-28 (44)
159 2ks1_B Epidermal growth factor 96.2 0.00075 2.6E-08 43.1 -0.1 19 310-328 11-29 (44)
160 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0047 1.6E-07 53.4 3.2 91 89-179 33-136 (197)
161 4gt6_A Cell surface protein; l 95.2 0.09 3.1E-06 49.9 10.0 83 93-179 284-367 (394)
162 4h09_A Hypothetical leucine ri 95.0 0.067 2.3E-06 50.3 8.6 84 92-177 235-318 (379)
163 4gt6_A Cell surface protein; l 94.9 0.047 1.6E-06 51.9 7.3 100 75-181 290-390 (394)
164 4fs7_A Uncharacterized protein 94.1 0.064 2.2E-06 51.0 6.0 84 92-179 292-376 (394)
165 4fs7_A Uncharacterized protein 93.7 0.11 3.7E-06 49.3 6.9 98 75-179 255-353 (394)
166 2k9y_A Ephrin type-A receptor 93.1 0.018 6.3E-07 36.2 0.1 26 310-335 13-40 (41)
167 2jwa_A Receptor tyrosine-prote 92.9 0.0078 2.7E-07 38.3 -1.7 14 310-324 12-25 (44)
168 4h09_A Hypothetical leucine ri 92.7 0.45 1.5E-05 44.6 9.4 83 92-177 258-341 (379)
169 2k1k_A Ephrin type-A receptor 91.5 0.031 1.1E-06 34.5 -0.3 12 310-321 11-22 (38)
170 1iij_A ERBB-2 receptor protein 81.8 0.095 3.2E-06 31.5 -2.1 14 310-324 8-21 (35)
171 2l8s_A Integrin alpha-1; trans 61.9 1.4 4.9E-05 29.1 -0.3 28 311-338 11-41 (54)
172 2knc_A Integrin alpha-IIB; tra 60.5 2 6.9E-05 28.4 0.2 28 311-338 14-44 (54)
173 2klu_A T-cell surface glycopro 57.6 6.3 0.00022 27.0 2.3 10 315-324 12-21 (70)
174 2ks1_B Epidermal growth factor 57.5 1.9 6.6E-05 27.2 -0.2 26 311-337 16-41 (44)
175 2l34_A TYRO protein tyrosine k 56.7 1.4 5E-05 26.0 -0.9 24 311-334 8-32 (33)
176 2l2t_A Receptor tyrosine-prote 56.0 2.3 7.8E-05 26.9 -0.1 24 312-336 16-39 (44)
177 2k1a_A Integrin alpha-IIB; sin 55.9 2.5 8.6E-05 26.4 0.1 16 311-326 12-27 (42)
178 1cd1_A CD1, MCD1D.1; immunolog 55.7 2.4 8.3E-05 38.9 0.0 10 311-320 285-294 (315)
179 2l6w_A Beta-type platelet-deri 59.1 2.7 9.2E-05 25.6 0.0 25 311-335 9-35 (39)
180 2llm_A Amyloid beta A4 protein 59.0 2.7 9.3E-05 26.2 0.0 25 311-335 18-43 (43)
181 1q55_A EP-cadherin, C-cadherin 46.3 4.2 0.00014 42.9 0.0 23 313-335 707-730 (880)
182 2knc_B Integrin beta-3; transm 40.6 1.9 6.6E-05 31.0 -2.6 15 310-324 11-25 (79)
183 2l9u_A Receptor tyrosine-prote 40.1 7.8 0.00027 22.8 0.5 22 315-336 11-34 (40)
184 1afo_A Glycophorin A; integral 38.0 5 0.00017 24.4 -0.6 23 313-335 16-38 (40)
185 2k9p_A Pheromone alpha factor 33.4 20 0.00068 25.7 1.9 26 311-336 22-47 (80)
186 2lp1_A C99; alzheimer'S D memb 28.9 17 0.00059 27.7 0.0 25 312-336 32-57 (122)
187 2lz0_A Uncharacterized protein 22.8 1.5E+02 0.0051 21.7 5.2 39 115-154 14-52 (100)
188 2lz0_A Uncharacterized protein 20.2 1.6E+02 0.0054 21.5 4.9 48 84-132 7-54 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=4.8e-26 Score=214.83 Aligned_cols=159 Identities=28% Similarity=0.488 Sum_probs=147.2
Q ss_pred cCcHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC--cceeEeCC----CcEEEEEecCCCCcc--cCchhhcCCC
Q 017648 26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCS--WFGVECSD----GKVVNLNLKDLCLEG--TLAPEIQSLT 97 (368)
Q Consensus 26 ~~~~~~~~aLl~~k~~~~~~~~~~l~~W~~~~~~~~~C~--w~Gv~C~~----~~v~~L~L~~n~l~g--~~p~~l~~L~ 97 (368)
.|.++|++||++||+++ .++. .+.+|. .+.+||. |.||.|+. ++|+.|+|++|+++| .+|..|.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~-~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDL-GNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHT-TCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhc-CCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCC
Confidence 47789999999999999 4654 678997 3568998 99999983 799999999999999 8999999999
Q ss_pred CCCEEEeec-CCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEec
Q 017648 98 HIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176 (368)
Q Consensus 98 ~L~~L~Ls~-N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 176 (368)
+|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..++.+++|++|+|++|.++|.+|..+..+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 999999995 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCc
Q 017648 177 DEGQLSSAAKKEQ 189 (368)
Q Consensus 177 ~~N~l~g~ip~~~ 189 (368)
++|+++|.+|...
T Consensus 157 ~~N~l~~~~p~~l 169 (313)
T 1ogq_A 157 DGNRISGAIPDSY 169 (313)
T ss_dssp CSSCCEEECCGGG
T ss_pred cCCcccCcCCHHH
Confidence 9999999998644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=9.3e-24 Score=222.18 Aligned_cols=161 Identities=23% Similarity=0.316 Sum_probs=124.1
Q ss_pred hhhcccCcHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcceeEeCCCcEEEEEecCCCCccc---Cch------
Q 017648 21 SLCLCWSLNDEGLALLRLRERVVRDPYGALTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGT---LAP------ 91 (368)
Q Consensus 21 ~~~~~~~~~~~~~aLl~~k~~~~~~~~~~l~~W~~~~~~~~~C~w~Gv~C~~~~v~~L~L~~n~l~g~---~p~------ 91 (368)
++.++++.++|++||++||+.+. |+. .+.+|+ .+.|||.|.||+|+.++|+.|+|+++.+.|. +++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~---~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWS---SNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCC---TTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred cCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCC---CCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccC
Confidence 33445567899999999999995 776 889997 4678999999999989999999999999987 554
Q ss_pred -----------------hhcCCCCCCEEEeecCCCCcCCcc--ccCCCCCCCEEEccCCcCCCCCCccc-CCCCCCCEEE
Q 017648 92 -----------------EIQSLTHIKSIILRNNSFSGIIPE--GFGELEELEVLDFGHNNFSGPLPNDL-GINHSLTILL 151 (368)
Q Consensus 92 -----------------~l~~L~~L~~L~Ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~l~g~lP~~l-~~l~~L~~L~ 151 (368)
.|+++++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 566778888888888888888887 78888888888888888888777765 6778888888
Q ss_pred ccCCcCCccCchh---hcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGSLSPE---IYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~iP~~---l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++|++++..|.. +.++++|++|++++|.++|.++
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 8888887777665 4555555555555555555444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.6e-23 Score=215.87 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHhccCCCCCCC-------CCCCCCCCCCCCCCc---ceeEeC-CCcEEEEEecCCCCcccCchhhcCC
Q 017648 28 LNDEGLALLRLRERVVRDPYGAL-------TSWRSCDTENNPCSW---FGVECS-DGKVVNLNLKDLCLEGTLAPEIQSL 96 (368)
Q Consensus 28 ~~~~~~aLl~~k~~~~~~~~~~l-------~~W~~~~~~~~~C~w---~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L 96 (368)
...|++||.++++++.++.|... .+|+ .+.++|.| .||+|+ .++|+.|+|+++++.|.+|++|++|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcC
Confidence 45799999999999866555432 3787 46889999 999997 6899999999999999999999999
Q ss_pred CCCCEEEeecCC--------------------------------------------------------------------
Q 017648 97 THIKSIILRNNS-------------------------------------------------------------------- 108 (368)
Q Consensus 97 ~~L~~L~Ls~N~-------------------------------------------------------------------- 108 (368)
++|++|+|++|.
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 999999999884
Q ss_pred ----------CCcCCccccCCCCCCCEEEccCCcCCCC-----------------CCcccC--CCCCCCEEEccCCcCCc
Q 017648 109 ----------FSGIIPEGFGELEELEVLDFGHNNFSGP-----------------LPNDLG--INHSLTILLLDNNDFVG 159 (368)
Q Consensus 109 ----------l~g~~P~~~~~l~~L~~L~Ls~N~l~g~-----------------lP~~l~--~l~~L~~L~Ls~N~l~g 159 (368)
++| +|..|+++++|++|+|++|.|+|. +|..++ ++++|++|+|++|++.|
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 445 888999999999999999999986 999999 99999999999999999
Q ss_pred cCchhhcCCCCCCEEeccCCC-CCc-cCCC
Q 017648 160 SLSPEIYKLQVLSESQVDEGQ-LSS-AAKK 187 (368)
Q Consensus 160 ~iP~~l~~l~~L~~L~L~~N~-l~g-~ip~ 187 (368)
.+|..++++++|++|++++|+ ++| .+|.
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchH
Confidence 999999999999999999998 998 7875
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.3e-22 Score=215.01 Aligned_cols=154 Identities=22% Similarity=0.299 Sum_probs=137.0
Q ss_pred cCcHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC----CCC--CCc------------ceeEeC-CCcEEEEEecCCCCc
Q 017648 26 WSLNDEGLALLRLRERVVRDPYGALTSWRSCDTE----NNP--CSW------------FGVECS-DGKVVNLNLKDLCLE 86 (368)
Q Consensus 26 ~~~~~~~~aLl~~k~~~~~~~~~~l~~W~~~~~~----~~~--C~w------------~Gv~C~-~~~v~~L~L~~n~l~ 86 (368)
+...+|++||++||+++. ++ +|+ ..+ .++ |.| .||.|+ .++|+.|+|++++|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~-----~W~--~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK-----NWR--YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG-----GCC--CCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCE
T ss_pred ccchHHHHHHHHHHHHcC-CC-----CCC--cCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCC
Confidence 345689999999999993 43 675 222 355 999 999998 689999999999999
Q ss_pred ccCchhhcCCCCCCEEEe-ecCCCCcC-----------------------------------------------------
Q 017648 87 GTLAPEIQSLTHIKSIIL-RNNSFSGI----------------------------------------------------- 112 (368)
Q Consensus 87 g~~p~~l~~L~~L~~L~L-s~N~l~g~----------------------------------------------------- 112 (368)
|.+|++|++|++|++|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 77766554
Q ss_pred -----------------------CccccCCCCCCCEEEccCCcCCC-----------------CCCcccC--CCCCCCEE
Q 017648 113 -----------------------IPEGFGELEELEVLDFGHNNFSG-----------------PLPNDLG--INHSLTIL 150 (368)
Q Consensus 113 -----------------------~P~~~~~l~~L~~L~Ls~N~l~g-----------------~lP~~l~--~l~~L~~L 150 (368)
+|..|++|++|++|+|++|.|+| .+|..++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 88889999999999999999998 4999988 99999999
Q ss_pred EccCCcCCccCchhhcCCCCCCEEeccCCC-CCc-cCCC
Q 017648 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQ-LSS-AAKK 187 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~-l~g-~ip~ 187 (368)
+|++|++.|.+|..++++++|++|+|++|+ |+| .+|.
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence 999999999999999999999999999998 999 7875
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.9e-21 Score=184.66 Aligned_cols=161 Identities=15% Similarity=0.185 Sum_probs=136.8
Q ss_pred cccCcHHHHHHHHHHHHhccCCCCCCCCCCCC-CCCCCCCCCcceeEeC----------CCcEEEEEecCCCCcccCchh
Q 017648 24 LCWSLNDEGLALLRLRERVVRDPYGALTSWRS-CDTENNPCSWFGVECS----------DGKVVNLNLKDLCLEGTLAPE 92 (368)
Q Consensus 24 ~~~~~~~~~~aLl~~k~~~~~~~~~~l~~W~~-~~~~~~~C~w~Gv~C~----------~~~v~~L~L~~n~l~g~~p~~ 92 (368)
..++..+|++||++||+.+..++.+.+..|.. .....++|.|.|+.|+ ..+|+.|+|++|+++ .+|..
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 34456789999999999987777666777820 0135689999999995 378999999999998 78888
Q ss_pred hcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcC-----
Q 017648 93 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYK----- 167 (368)
Q Consensus 93 l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~----- 167 (368)
+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|++.+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 999999999999999999 89999999999999999999999 88999999999999999999998899887764
Q ss_pred ----CCCCCEEeccCCCCCccCCCC
Q 017648 168 ----LQVLSESQVDEGQLSSAAKKE 188 (368)
Q Consensus 168 ----l~~L~~L~L~~N~l~g~ip~~ 188 (368)
+++|++|+|++|.++ .+|..
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~ 201 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPAS 201 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGG
T ss_pred hhccCCCCCEEECcCCCcC-cchHh
Confidence 889999999999888 67753
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.9e-18 Score=151.18 Aligned_cols=155 Identities=17% Similarity=0.254 Sum_probs=128.0
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCch-hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccC
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 130 (368)
|.|..+.|.. .+++.|+|++|.|++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888862 3789999999999976654 489999999999999999998899999999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCccccccccc-ccCcCChhHHHh
Q 017648 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQR 209 (368)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~-~~~~~~~~~~~~ 209 (368)
|+|++..+..+..+++|++|+|++|++++.+|..+..+++|++|+|++|+|++. |....+. |.. ......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~------c~l~~~~~~l~---~~~~~~ 158 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN------CHLAWFAEWLR---KKSLNG 158 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS------GGGHHHHHHHH---HHCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc------CcchHHHHHHH---HcCCCC
Confidence 999988888899999999999999999999999999999999999999999854 4333222 111 111123
Q ss_pred hccCccccccccCCcCC
Q 017648 210 RLLQINPFRNLKGRILG 226 (368)
Q Consensus 210 ~~~~c~~~~~~~g~~l~ 226 (368)
....|..+..++|..+.
T Consensus 159 ~~~~C~~P~~l~~~~l~ 175 (192)
T 1w8a_A 159 GAARCGAPSKVRDVQIK 175 (192)
T ss_dssp GGCBBCSSTTTTTSBGG
T ss_pred CCCCCCCChHHcCCChh
Confidence 45678888888887764
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.8e-17 Score=149.03 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=114.2
Q ss_pred CCCCCCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEE
Q 017648 59 ENNPCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLD 127 (368)
Q Consensus 59 ~~~~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 127 (368)
....|+|.+|.|.. .+++.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|++|+
T Consensus 15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 56789999999972 3689999999999998888899999999999999999865556789999999999
Q ss_pred ccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 128 FGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 128 Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++|+|++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|+|++..+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 9999999766666889999999999999999 889999999999999999999986544
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.1e-17 Score=147.73 Aligned_cols=164 Identities=19% Similarity=0.180 Sum_probs=128.5
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCC
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 131 (368)
|.|..|.|.. ..++.|+|++|+|++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 6789999962 36899999999999777778999999999999999999888999999999999999999
Q ss_pred cCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCcc-------cccccccccCcCCh
Q 017648 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLDE 204 (368)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~-------~~~~~~~~~~~~~~ 204 (368)
.|++..+..+..+++|++|+|++|++++..|..+..+++|++|+|++|+|++..+.... .....+.|.+.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99954444578899999999999999988888899999999999999999876553221 12223334443433
Q ss_pred hHHH---------hhccCccccccccCCcCC
Q 017648 205 DTVQ---------RRLLQINPFRNLKGRILG 226 (368)
Q Consensus 205 ~~~~---------~~~~~c~~~~~~~g~~l~ 226 (368)
.+.. .....|..+..++|..+.
T Consensus 171 ~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~ 201 (220)
T 2v9t_B 171 KWLADYLHTNPIETSGARCTSPRRLANKRIG 201 (220)
T ss_dssp HHHHHHHHHCCCBCSCCBEEESGGGTTCBGG
T ss_pred HHHHHHHHhCCCCccCCCcCCchHHcCCchh
Confidence 3322 133568888888888775
No 9
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=146.22 Aligned_cols=157 Identities=21% Similarity=0.267 Sum_probs=129.5
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCC
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 131 (368)
|.|..+.|.. ..++.|+|++|.|+ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5677788852 36899999999998 78889999999999999999999877888999999999999999
Q ss_pred cCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCccccccccc-ccCcCChhHHHhh
Q 017648 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRR 210 (368)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~-~~~~~~~~~~~~~ 210 (368)
++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|++. ++|....+. |.... .....
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------C~c~l~~l~~~~~~~---~~~~~ 159 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY------CDCNMQWLSDWVKSE---YKEPG 159 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE------CSGGGHHHHHHHHHS---SCCCS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee------cCCcCHHHHHHHHhc---cCCCC
Confidence 999887888999999999999999999655556889999999999999987 677765544 32110 11134
Q ss_pred ccCccccccccCCcCCCCC
Q 017648 211 LLQINPFRNLKGRILGIAP 229 (368)
Q Consensus 211 ~~~c~~~~~~~g~~l~~~~ 229 (368)
...|..+..++|..+...+
T Consensus 160 ~~~C~~P~~l~g~~l~~~~ 178 (193)
T 2wfh_A 160 IARCAGPGEMADKLLLTTP 178 (193)
T ss_dssp CCBEEESGGGTTCBTTTSC
T ss_pred CcCcCCchHHCCCCcccCC
Confidence 4689999999998875333
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=2.5e-17 Score=141.79 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=108.7
Q ss_pred CCCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccC
Q 017648 62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (368)
Q Consensus 62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 130 (368)
.|.|.++.|.. .+++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 37899999962 4689999999999976666789999999999999999976667789999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+|++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99997666678899999999999999996555556889999999999999986544
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.1e-16 Score=141.35 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=108.9
Q ss_pred CCCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccC
Q 017648 62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (368)
Q Consensus 62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 130 (368)
.|.|.+|.|+. .+++.|+|++|++++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 47899999962 3689999999999976666689999999999999999976666789999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 99996666668899999999999999997666678899999999999999986554
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=145.92 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=111.4
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCch-hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccC
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 130 (368)
|.|..+.|.. ..++.|+|++|.|++..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5677777751 2467788888888866443 477788888888888888876666788888888888888
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCccc-------ccccccccCcCC
Q 017648 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSC-------YERSIKWNGVLD 203 (368)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~-------~~~~~~~~~~~~ 203 (368)
|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|+|++|+|++..|..... ....+.|.+.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8888666666777888888888888888777777778888888888888887765542221 112222333333
Q ss_pred hhHHH---------hhccCccccccccCCcCC
Q 017648 204 EDTVQ---------RRLLQINPFRNLKGRILG 226 (368)
Q Consensus 204 ~~~~~---------~~~~~c~~~~~~~g~~l~ 226 (368)
..... .....|..+..++|..+.
T Consensus 171 l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~ 202 (220)
T 2v70_A 171 LAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQ 202 (220)
T ss_dssp GHHHHHHHHHSCCBCCCCEEEESGGGTTEEGG
T ss_pred hHHHHHHHHhcCccccCCccCCChHHCCCChh
Confidence 22211 123357777777777664
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=3.2e-17 Score=172.42 Aligned_cols=94 Identities=28% Similarity=0.479 Sum_probs=89.9
Q ss_pred CCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEE
Q 017648 95 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSES 174 (368)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 174 (368)
.+.+|++|||++|.++|.+|..|+++++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+.++++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccCCCC
Q 017648 175 QVDEGQLSSAAKKE 188 (368)
Q Consensus 175 ~L~~N~l~g~ip~~ 188 (368)
++++|+|+|.||..
T Consensus 710 ~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSEEEEECCSS
T ss_pred ECcCCcccccCCCc
Confidence 99999999999964
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=142.10 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=106.3
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 45799999999999987777899999999999999999988888899999999999999999988899999999999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~i 185 (368)
|++|++++..|..+..+++|++|+|++|+|++..
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9999999888999999999999999999998543
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=3.5e-16 Score=142.31 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=57.4
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 35556666666655555455555555555555555555444445555555555555555554433444455555555555
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+|++++..+..+..+++|++|+|++|++++
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 555553333334444455555555554443
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=1.1e-16 Score=150.63 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=111.5
Q ss_pred CcEEEEEecC-CCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++ |++.+.+|..|.++++|++|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..++.+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5789999995 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCccCchhhcCCC-CCCEEeccCCCCCccCCCCc
Q 017648 152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKKEQ 189 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~-~L~~L~L~~N~l~g~ip~~~ 189 (368)
|++|.++|.+|..++.+. +|++|++++|+++|.+|...
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 999999999999999998 99999999999999988643
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=9.7e-16 Score=136.86 Aligned_cols=118 Identities=16% Similarity=0.215 Sum_probs=106.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|++..+..|.++++|++|+|++|.|+...+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 57999999999999888999999999999999999999655556789999999999999999888889999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCcccccccc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSI 196 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~ 196 (368)
++|++++..+..+..+++|++|+|++|+|. ++|....+
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------c~c~l~~l 173 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFI------CDCHLKWL 173 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCEE------CSGGGHHH
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCcC------CCCccHHH
Confidence 999999777778999999999999999987 66665544
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=4.2e-16 Score=158.79 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=116.9
Q ss_pred CcEEEEEecCCCCc-ccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..++.|+|++|.+. +.+|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..+..+++|++||
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 46788888888754 44666788888999999999999888888888899999999999999877777788888999999
Q ss_pred ccCCcCCccCchhhcCC-CCCCEEeccCCCCCccCCCCccccccccc-ccCcCChhHHHhhccCccccccccCCcCCCC
Q 017648 152 LDNNDFVGSLSPEIYKL-QVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRILGIA 228 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l-~~L~~L~L~~N~l~g~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l~~~ 228 (368)
|++|++++..|..+..+ .+|++|+|++|+|+ |+|....+. |.............+.|..+..++|..+...
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~------C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 621 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC------CSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc------ccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee
Confidence 99999998888888877 68999999999886 888776655 4322222222245678999999999887533
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.2e-15 Score=138.46 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=72.9
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.++.|+|++|++++..+..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 35666777776665444556777777777777777764434445667777777777777765444456666777777777
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
+|++++..+..+..+++|++|+|++|.+++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 7777755555566677777777777776643
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=1.5e-15 Score=143.79 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=65.3
Q ss_pred CcEEEEEecCCCCcccCchhhcC---------CCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCC
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQS---------LTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGI 143 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~---------L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~ 143 (368)
.+++.|+|++|++.+.+|..+.. +++|++|+|++|.++ .+|..+..+++|++|+|++|.+++ +|..++.
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence 45666666666666555554443 556666666666655 555555555556666666655553 4445555
Q ss_pred CCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 144 NHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 144 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
+++|++|+|++|++.+.+|..+..+++|++|+|++|++.+.+|.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 55555555555555555555555555555555555555555554
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.2e-15 Score=131.82 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=102.1
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 57999999999999666666899999999999999999766667899999999999999999766666899999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|++++..+..+..+++|++|++++|.+.+..|.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 99999976666688999999999999999877663
No 22
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=3.7e-15 Score=127.70 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=93.2
Q ss_pred EEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 017648 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (368)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N 155 (368)
+.|++++|+|+ .+|..+. .+|++|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46788888888 4777664 89999999999999888999999999999999999999766666889999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 156 DFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 156 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+|++..+..+..+++|++|+|++|+|++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9997666679999999999999999873
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=1.2e-15 Score=153.60 Aligned_cols=125 Identities=21% Similarity=0.275 Sum_probs=109.2
Q ss_pred CCCcceeEeCC-------------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEc
Q 017648 62 PCSWFGVECSD-------------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDF 128 (368)
Q Consensus 62 ~C~w~Gv~C~~-------------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 128 (368)
.|.|.|+ |+. .++++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4888888 861 36899999999999888888999999999999999999888888999999999999
Q ss_pred cCCcCCCCCCcccCCCCCCCEEEccCCcCCc-cCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 129 GHNNFSGPLPNDLGINHSLTILLLDNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 129 s~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|.+++..+..++++++|++|+|++|.+++ .+|..+.++++|++|++++|.+.+.+|.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence 9999997777779999999999999999986 4677888999999999999987777764
No 24
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.4e-15 Score=126.98 Aligned_cols=112 Identities=20% Similarity=0.201 Sum_probs=101.2
Q ss_pred CcEEEEEecCCCCc-ccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 36899999999998 88998899999999999999999975 7899999999999999999988888888899999999
Q ss_pred ccCCcCCcc-CchhhcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~-iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++|.+++. .+..+..+++|++|++++|++++..+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999963 44789999999999999999986543
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4.5e-15 Score=136.62 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=96.5
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..++++|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..++.+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 35788999999999877666688889999999999999877677788889999999999998876666678888999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++|++++..+..+..+++|++|++++|++++..+.
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 999998876666678888999999999988876654
No 26
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=7.8e-15 Score=133.30 Aligned_cols=115 Identities=23% Similarity=0.219 Sum_probs=99.0
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 57899999999999877777899999999999999999777777889999999999999999665556788999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|++++..+..+..+++|++|+|++|++++..+.
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99999966666788899999999999999866553
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=5.6e-16 Score=161.91 Aligned_cols=111 Identities=25% Similarity=0.335 Sum_probs=101.2
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
..++.|+|++|.+. .+|..+.+|++|++|+|++|.|+ .+|..|..|++|++|+|++|.|+ .+|..+++|.+|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 35678899999988 78888889999999999999999 89999999999999999999999 88999999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|.|+ .+|..|+++++|++|+|++|+|+|.+|.
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 999997 8899999999999999999999987765
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=9.3e-15 Score=131.21 Aligned_cols=110 Identities=21% Similarity=0.187 Sum_probs=99.7
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 57999999999998655566899999999999999999776777899999999999999999 89999999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
++|++++..+..+..+++|+.|+|++|+|++
T Consensus 143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999996666678899999999999999873
No 29
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1e-14 Score=125.45 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=92.9
Q ss_pred EEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 017648 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (368)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N 155 (368)
+.+++++|+|+ .+|..+. .+|++|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999996 7887665 89999999999999888999999999999999999999755555789999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 156 DFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 156 ~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
+|++..+..+..+++|++|+|++|+|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999655556899999999999999987
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=3.1e-15 Score=139.68 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=92.5
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCc-CCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG-IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.+.+..+..+..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..|..+..+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 467888888888887777778888888888888888876 5677788888888888888888877777788888888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++|.+++..+..+..+++|++|++++|++++..|.
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 888888866666777888888888888888877665
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=5.4e-15 Score=145.35 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=106.3
Q ss_pred CCCCcce--eEeCC----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCC-ccccCCCCCCCEEE
Q 017648 61 NPCSWFG--VECSD----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGII-PEGFGELEELEVLD 127 (368)
Q Consensus 61 ~~C~w~G--v~C~~----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~-P~~~~~l~~L~~L~ 127 (368)
+.|.|.+ |.|+. .++++|+|++|.+++..+..|.++++|++|+|++|.+.+.+ +..|..+++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 4566655 77762 46899999999999888888999999999999999998766 46688999999999
Q ss_pred ccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchh--hcCCCCCCEEeccCCCCCccCCC
Q 017648 128 FGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPE--IYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 128 Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++|.+++..|..++++++|++|+|++|++++.++.. +.++++|++|+|++|++++..|.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 9999998888888999999999999999998766665 78888999999999988887775
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.4e-15 Score=125.90 Aligned_cols=112 Identities=18% Similarity=0.187 Sum_probs=95.3
Q ss_pred CcEEEEEecCCCCc-ccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46889999999998 78888888899999999999999865 7788999999999999999987888787889999999
Q ss_pred ccCCcCCcc-CchhhcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGS-LSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~-iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++|++++. .+..+..+++|++|++++|.+++..+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 999999853 22678889999999999999885543
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=8.1e-15 Score=149.27 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=100.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
..+++|+|++|.|++..+..|.+|++|++|||++|.+++..+..|.+|++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36899999999999777778999999999999999999777778999999999999999999665567899999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCc-cCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g-~ip~ 187 (368)
++|++++..+..|+++++|++|+|++|.+++ .+|.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence 9999996666678899999999999999875 3454
No 34
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=1e-14 Score=127.32 Aligned_cols=111 Identities=20% Similarity=0.283 Sum_probs=100.0
Q ss_pred EEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCcc-ccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE-GFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~-~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
+.|++++|+|+ .+|..+.. +|++|+|++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67999999996 78876653 999999999999976664 489999999999999999998899999999999999999
Q ss_pred CcCCccCchhhcCCCCCCEEeccCCCCCccCCCCc
Q 017648 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (368)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~ 189 (368)
|++++..+..+..+++|++|+|++|+|++.+|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 99998888889999999999999999999877643
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=2.1e-14 Score=132.03 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=87.5
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++ + +.+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..++.+++|++|+|
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 467888888888876 3 36788888888888888888766666788888888888888888666666778888888888
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|++++..+..+..+++|++|++++|++++..+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 88888866666677888888888888888765553
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=138.87 Aligned_cols=121 Identities=24% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCchhhc-CCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccC
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 130 (368)
|.+..+.|.. ..++.|+|++|+|++..+..+. ++.+|++|+|++|.|++..+..|..+++|++|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666641 2356677777777655444454 666666666666666655555566666666666666
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
|+|++..+..|..+.+|+.|+|++|++++..+..|..+++|++|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 66664444455566666666666666665555555555555555555555553
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.54 E-value=2.4e-14 Score=145.92 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=54.0
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
++++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..++++.+|++|+|+
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence 34444444444443334444444444444444444444444444444444444444444443333444444555555555
Q ss_pred CCcCCc-cCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|.+++ .+|..++++++|++|++++|++++..+
T Consensus 137 ~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp SSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 555543 345555555555555555555555444
No 38
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=1.2e-14 Score=138.16 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=98.1
Q ss_pred CCcceeEeCCCcEEEEEecCC-CCcccCchhhcCCCCCCEEEeec-CCCCcCCccccCCCCCCCEEEccCCcCCCCCCcc
Q 017648 63 CSWFGVECSDGKVVNLNLKDL-CLEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND 140 (368)
Q Consensus 63 C~w~Gv~C~~~~v~~L~L~~n-~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~ 140 (368)
|.|.+|.| +++ +|+ .+|. |..+++|++|+|++ |.|++..+..|..|++|++|+|++|+|++..|..
T Consensus 8 C~~~~v~~----------~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 75 (347)
T 2ifg_A 8 HGSSGLRC----------TRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75 (347)
T ss_dssp SSSSCEEC----------CSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred ccCCEEEc----------CCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence 77776665 445 677 4888 99999999999996 9999888889999999999999999999988889
Q ss_pred cCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCccccccccc
Q 017648 141 LGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK 197 (368)
Q Consensus 141 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~ 197 (368)
|+++++|+.|+|++|+|++..+..+..+. |+.|+|.+|+|. ++|.+..+.
T Consensus 76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~------c~c~l~~~~ 125 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH------CSCALRWLQ 125 (347)
T ss_dssp GGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC------CCGGGHHHH
T ss_pred hcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc------CCCccHHHH
Confidence 99999999999999999955444455555 999999999997 677765544
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.53 E-value=2.1e-14 Score=141.10 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=80.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
..++.|+|++|.+.+.++..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..++.+++|++|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 35677777777777766666777777777777777777666667777777777777777777666666777777777777
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
++|++++..|..+..+++|++|+|++|++++.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhhccccccccEEECCCCccccC
Confidence 77777766666777777777777777777653
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=1.4e-14 Score=133.98 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=90.3
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 46888888888888777777888888888888888888665666788888888888888888555556778888888888
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~i 185 (368)
++|.+++..|..+..+++|++|++++|.+++..
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 888888777888888888888888888887643
No 41
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.8e-14 Score=146.29 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=102.0
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.++.|+|++|.|++ +|. |..|++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.|++ +| .++.+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57889999999996 676 999999999999999999 899999999999999999999996 77 89999999999999
Q ss_pred CCcCCccC-chhhcCCCCCCEEeccCCCCCccCCC
Q 017648 154 NNDFVGSL-SPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 154 ~N~l~g~i-P~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
+|+|++.. |..++.+++|+.|+|++|+|++..|.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 99999877 99999999999999999999988663
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=5.8e-15 Score=151.99 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=112.6
Q ss_pred CCcceeEeC---CCcEEEEEecCCCCccc-----------------Cchhhc--CCCCCCEEEeecCCCCcCCccccCCC
Q 017648 63 CSWFGVECS---DGKVVNLNLKDLCLEGT-----------------LAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGEL 120 (368)
Q Consensus 63 C~w~Gv~C~---~~~v~~L~L~~n~l~g~-----------------~p~~l~--~L~~L~~L~Ls~N~l~g~~P~~~~~l 120 (368)
+...|+.-. ..++++|+|++|.++|. +|..++ ++++|++|+|++|.+.|.+|..|+++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 455564321 46899999999999996 999999 99999999999999999999999999
Q ss_pred CCCCEEEccCCc-CCC-CCCcccCCC------CCCCEEEccCCcCCccCch--hhcCCCCCCEEeccCCCCCccCC
Q 017648 121 EELEVLDFGHNN-FSG-PLPNDLGIN------HSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 121 ~~L~~L~Ls~N~-l~g-~lP~~l~~l------~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|++|+|++|+ ++| .+|..++.+ ++|++|+|++|+++ .+|. .++++++|++|++++|+++|.+|
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 999999999998 998 899988876 99999999999999 8998 89999999999999999999999
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=136.65 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=94.2
Q ss_pred CCCCCcceeEeC-------------CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEE
Q 017648 60 NNPCSWFGVECS-------------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVL 126 (368)
Q Consensus 60 ~~~C~w~Gv~C~-------------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 126 (368)
...|.|.|+ |+ ..++++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 456777776 64 1368889999999887655578888999999999998887777788888889999
Q ss_pred EccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCch--hhcCCCCCCEEeccCCCC
Q 017648 127 DFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 127 ~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l 181 (368)
+|++|++++..+..++.+++|++|+|++|+++ .+|. .+.++++|++|++++|+.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSS
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcc
Confidence 99999888543334788888888888888888 4554 677888888888888853
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=6.8e-14 Score=129.23 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=87.2
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCc-CCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~-l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|. +.+..+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 367788888888876666667888888888888888887667778888888888888886 6655566777788888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++|.+++..+..+.++++|++|++++|.+++..+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 88888887667777778888888888888775444
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=1.5e-14 Score=147.34 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=96.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcC-CccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.+.+.++..+..+++|++|+|++|.+++. +|..|..+++|++|+|++|.+++..|..++.+++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 4788888888888888888888888888888888888873 677888888888888888888887788888888888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++|++++.+|..+.++++|++|++++|+++ .+|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 8888888888888888888888888888887 4554
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=7.2e-14 Score=128.45 Aligned_cols=110 Identities=18% Similarity=0.110 Sum_probs=63.0
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
.++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35666666666665444455666666666666666655444455566666666666666655444555555566666666
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+|++.+..+..+.++++|++|++++|.+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccce
Confidence 665554444345555555556655555554
No 47
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=120.47 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=96.7
Q ss_pred EEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 017648 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNN 155 (368)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N 155 (368)
+.+++++|+|+ .+|..+. .+|++|+|++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56899999998 6777654 68999999999998 78899999999999999999999877788999999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 156 DFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 156 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++++..+..|..+++|++|+|++|+|++..+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 9998888889999999999999999986444
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=5.6e-14 Score=131.04 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=88.4
Q ss_pred CcEEEEEecCCCCcc-cCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEG-TLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.+.+ .+|..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 456677777776665 4555666677777777777777666666666677777777777777655555566666777777
Q ss_pred ccCCcCCccCchhhcCCC-CCCEEeccCCCCCccCCCCccccccccc-ccCcCChhHHHhhccCccccccccCCcC
Q 017648 152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKKEQSCYERSIK-WNGVLDEDTVQRRLLQINPFRNLKGRIL 225 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~-~L~~L~L~~N~l~g~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~g~~l 225 (368)
|++|++++..|..+..+. +|++|+|++|+|+ +.|....+. |.............+.|..+..++|..+
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~------~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~ 299 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 299 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE------CSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBG
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCee------cccChHHHHHHHHhhhhhhccccccccCCchhhCCcee
Confidence 777777766666666663 6777777777665 333332221 2211111111234556666666666554
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=141.04 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=98.6
Q ss_pred CcEEEEEecCCCCcccCch-hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|+..+.++. .|.++++|++|+|++|.++ .+| .+..+++|++|+|++|.+++..|..|.++++|+.|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 4677888887554444444 5777788888888888777 455 367777777888888777776677777777777777
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCc-------ccccccccccCcCChhHHH-----------hhccC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ-------SCYERSIKWNGVLDEDTVQ-----------RRLLQ 213 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~-------~~~~~~~~~~~~~~~~~~~-----------~~~~~ 213 (368)
|++|++++..+..+.++++|++|+|++|+|++..+... .-....+.|.+.+...+.. .....
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~ 317 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCAR 317 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCB
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccC
Confidence 77777776666677777777777777777775433211 1112223333433333221 12246
Q ss_pred ccccccccCCcCC
Q 017648 214 INPFRNLKGRILG 226 (368)
Q Consensus 214 c~~~~~~~g~~l~ 226 (368)
|..+..++|..+.
T Consensus 318 C~~P~~l~g~~l~ 330 (440)
T 3zyj_A 318 CNTPPNLKGRYIG 330 (440)
T ss_dssp EEESTTTTTCBCC
T ss_pred CCChhHhcCccHh
Confidence 7788888887764
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.50 E-value=3.6e-14 Score=143.65 Aligned_cols=108 Identities=22% Similarity=0.228 Sum_probs=96.5
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 47899999999999877788999999999999999999888888999999999999999998 67766 7899999999
Q ss_pred cCCcCCc-cCchhhcCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
++|++++ .+|..++++++|++|++++|.+++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9999986 457889999999999999998875
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.50 E-value=8.4e-14 Score=137.91 Aligned_cols=124 Identities=21% Similarity=0.187 Sum_probs=99.4
Q ss_pred CcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCc
Q 017648 64 SWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132 (368)
Q Consensus 64 ~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~ 132 (368)
.|..|.|.. .+++.|+|++|+|++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 366777751 367888999998887777788888889999998888888778888888888888888888
Q ss_pred CCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 133 l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
+++..+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+++..+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence 8854445578888888888888888877777788888888888888887765543
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=2.5e-14 Score=141.02 Aligned_cols=153 Identities=20% Similarity=0.157 Sum_probs=101.8
Q ss_pred CcEEEEEecCCCCcccCch-hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAP-EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|+..+.++. .|..+++|++|+|++|.+++ +| .+..+++|++|+|++|.+++..|..+.++++|+.|+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 4677888887544445554 47778888888888888874 44 477778888888888888877777777888888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCcc-------cccccccccCcCChhHHH-----------hhccC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLDEDTVQ-----------RRLLQ 213 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~-------~~~~~~~~~~~~~~~~~~-----------~~~~~ 213 (368)
|++|++++..+..+..+++|++|+|++|+|++..+.... .....+.|.+.+...+.. .....
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~ 328 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGR 328 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCB
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcE
Confidence 888888877777777778888888888877754332211 112223333443333221 12346
Q ss_pred ccccccccCCcCCC
Q 017648 214 INPFRNLKGRILGI 227 (368)
Q Consensus 214 c~~~~~~~g~~l~~ 227 (368)
|..+..++|..+..
T Consensus 329 C~~P~~l~g~~l~~ 342 (452)
T 3zyi_A 329 CHAPMHMRGRYLVE 342 (452)
T ss_dssp EEESTTTTTCBTTS
T ss_pred eCCchHhccchhhc
Confidence 88888888887643
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=8.2e-14 Score=142.26 Aligned_cols=109 Identities=22% Similarity=0.209 Sum_probs=54.7
Q ss_pred EEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
++.|+|++|.|++..+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+++++|++|+|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 34444455555444444455555555555555555544444445555555555555555532222234555555555555
Q ss_pred CcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
|.+++..|..+..+++|++|+|++|.+++
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 55554444445555555555555555543
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.4e-13 Score=128.04 Aligned_cols=113 Identities=21% Similarity=0.173 Sum_probs=88.5
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|+ .+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 46777888888877 66777788888888888888888766677888888888888888888655556778888888888
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|++++..+..+..+++|++|+|++|+|+ .+|.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 888888444445667888888888888887 4554
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=9.9e-14 Score=127.52 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=102.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..++.+++|++|+|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 57999999999999777778999999999999999999888888999999999999999999766667999999999999
Q ss_pred cCCcCCc-cCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|.+++ .+|..+.++++|++|++++|++++..+
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 9999986 478999999999999999999987544
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=134.56 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=91.9
Q ss_pred cceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcC
Q 017648 65 WFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (368)
Q Consensus 65 w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 133 (368)
|..|.|.. ..++.|+|++|+|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 56777752 3578889999988877777888888899999988888877778888888888888888888
Q ss_pred CCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 134 ~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++..+..+..+++|++|+|++|.+++..+..+.++++|++|+|++|+..+.++
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 85555568888888888888888875544456666666666666644444433
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=6.7e-14 Score=148.56 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=59.9
Q ss_pred EEEEEecCCCCcccC-chhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcc--cCCCCCCCEEE
Q 017648 75 VVNLNLKDLCLEGTL-APEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND--LGINHSLTILL 151 (368)
Q Consensus 75 v~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~--l~~l~~L~~L~ 151 (368)
++.|+|++|.+.+.+ +..|.+|++|++|+|++|.+.+..|..|.++++|++|+|++|.+++.++.. ++++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 344444444333333 334555555555555555555555555555555555555555555544443 55555566666
Q ss_pred ccCCcCCccCc-hhhcCCCCCCEEeccCCCCCccCCC
Q 017648 152 LDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 152 Ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++|.+++..+ ..++++++|++|+|++|.+++..+.
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 66665554433 3455666666666666666555443
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=1.3e-13 Score=128.25 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=103.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 57899999999999777778999999999999999999777777899999999999999999544455788999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCcccccccc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSI 196 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~ 196 (368)
++|+++ .+|..+..+.+|++|+|++|++. +.|....+
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~------C~c~~~~l 216 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL------CNCEILYF 216 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEEECCSCCBC------CSGGGHHH
T ss_pred CCCcCC-ccChhhcccccCCeEEeCCCCcc------CcCccHHH
Confidence 999999 88999999999999999999886 77755443
No 59
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1e-13 Score=132.80 Aligned_cols=110 Identities=20% Similarity=0.172 Sum_probs=98.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 57999999999999877778999999999999999999877778999999999999999999888889999999999999
Q ss_pred cCCcCCccCchhh----cCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVGSLSPEI----YKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g~iP~~l----~~l~~L~~L~L~~N~l~g 183 (368)
++|++++ +|..+ ..+++|++|+|++|+|++
T Consensus 144 ~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 144 SQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9999994 56554 579999999999999985
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.7e-13 Score=124.41 Aligned_cols=110 Identities=23% Similarity=0.244 Sum_probs=63.3
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
++++|+|++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|+
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 45555555555554333445555566666666666655444555566666666666666664333345566666666666
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+|++++..+..+..+++|++|+|++|++++
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 666664444445566666666666666654
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=4.3e-14 Score=144.01 Aligned_cols=155 Identities=14% Similarity=0.068 Sum_probs=119.2
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcC---CccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI---IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTI 149 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~---~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 149 (368)
.+++.|+|++|.+.+..+..+..+++|++|+|++|.+++. .+..+..+++|++|+|++|++++..|..++.+++|+.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 4789999999999988888899999999999999999863 3356888999999999999999888888999999999
Q ss_pred EEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCcc-------cccccccccCcCChhHH------------Hhh
Q 017648 150 LLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQS-------CYERSIKWNGVLDEDTV------------QRR 210 (368)
Q Consensus 150 L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~-------~~~~~~~~~~~~~~~~~------------~~~ 210 (368)
|+|++|++++..|..+.++++| +|++++|++++..|.... -....+.|.+.+..... ...
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~ 583 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTE 583 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCC
Confidence 9999999998888899999999 999999999977664211 12222233333332111 124
Q ss_pred ccCccccccccCCcCCCC
Q 017648 211 LLQINPFRNLKGRILGIA 228 (368)
Q Consensus 211 ~~~c~~~~~~~g~~l~~~ 228 (368)
...|..+..++|..+...
T Consensus 584 ~~~C~~p~~~~g~~l~~~ 601 (606)
T 3t6q_A 584 DTLCENPPLLRGVRLSDV 601 (606)
T ss_dssp GCBEEESGGGTTCBGGGC
T ss_pred CCeeCCchHhCCCeeeee
Confidence 467888888888877533
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=7.8e-14 Score=122.03 Aligned_cols=108 Identities=11% Similarity=0.193 Sum_probs=95.9
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.++ ....+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..++.+++|++|+|
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 47999999999765 3347899999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
++|.+.+.++ .+..+++|++|++++|.+++
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 9998444776 68899999999999999986
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=1.7e-13 Score=135.14 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=97.4
Q ss_pred cceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcC
Q 017648 65 WFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (368)
Q Consensus 65 w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 133 (368)
|..|.|.. .+++.|+|++|+|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 56788852 3689999999999988888899999999999999999988888999999999999999999
Q ss_pred CCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccC
Q 017648 134 SGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (368)
Q Consensus 134 ~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~i 185 (368)
++..+..+..+++|++|+|++|.+++..+..+.++++|++|++++|+..+.+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 9666666888999999999999988544445555555555555554333333
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=4.5e-14 Score=132.47 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=34.2
Q ss_pred EEEEEecCCCCcccCchhh--cCCCCCCEEEeecCCCCcCCccccCCC-----CCCCEEEccCCcCCCCCCcccCCCCCC
Q 017648 75 VVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLGINHSL 147 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l--~~L~~L~~L~Ls~N~l~g~~P~~~~~l-----~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (368)
+++|+|++|.+++.+|..+ ..+++|++|+|++|.+++. |..+..+ ++|++|+|++|++.+..+..++.+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4444444444444444333 3444444444444444433 3333333 344444444444443333344444444
Q ss_pred CEEEccCCcCC
Q 017648 148 TILLLDNNDFV 158 (368)
Q Consensus 148 ~~L~Ls~N~l~ 158 (368)
++|+|++|++.
T Consensus 176 ~~L~Ls~N~l~ 186 (312)
T 1wwl_A 176 STLDLSDNPEL 186 (312)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECCCCCcC
Confidence 44444444443
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=9.6e-14 Score=118.06 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=96.9
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCC-CCcccCCCCCCCEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTIL 150 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~-lP~~l~~l~~L~~L 150 (368)
..+++.|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|.+++. .+..+..+++|++|
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 35799999999999975 7799999999999999999988888888899999999999999953 22688999999999
Q ss_pred EccCCcCCccCc---hhhcCCCCCCEEeccCCCCC
Q 017648 151 LLDNNDFVGSLS---PEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 151 ~Ls~N~l~g~iP---~~l~~l~~L~~L~L~~N~l~ 182 (368)
+|++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999996554 47889999999999999876
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.46 E-value=1.6e-13 Score=139.71 Aligned_cols=117 Identities=14% Similarity=0.048 Sum_probs=101.2
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
..++.|+|++|.|++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..++++++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46899999999999887888999999999999999999888888999999999999999999888888999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCc-cCCCCc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS-AAKKEQ 189 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g-~ip~~~ 189 (368)
++|++++..+..+.++++|++|++++|.+++ .+|...
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCccccc
Confidence 9999987656778888899999999998887 445433
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.45 E-value=2.5e-13 Score=140.37 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=57.6
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
++++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..++++++|++|+|+
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 44455555555544444445555555555555555553222345555555555555555554444445555555555555
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~i 185 (368)
+|.+++..+..+.++++|++|++++|.+++..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CCcccccCchhhcccccCCEEEccCCcccccC
Confidence 55555555555555555555555555555443
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=138.76 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=86.9
Q ss_pred CcEEEEEecCCCCcccCc-hhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCC-CCCCcccCCCCCCCEE
Q 017648 73 GKVVNLNLKDLCLEGTLA-PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFS-GPLPNDLGINHSLTIL 150 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-g~lP~~l~~l~~L~~L 150 (368)
.+++.|+|++|.+.+..+ ..+.++++|++|+|++|.+.+.+|..|..+++|++|+|++|.+. +.+|..+..+++|+.|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 467778888887776655 35777778888888888887777777777788888888888776 5677777777788888
Q ss_pred EccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 151 LLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
+|++|++++..|..+..+++|++|++++|++++..+.
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 8888887777777777777788888888877766554
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.45 E-value=3.1e-13 Score=130.41 Aligned_cols=112 Identities=18% Similarity=0.206 Sum_probs=72.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.|++++|.++...+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..|..++.+++|++|+|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 46667777777664333335667777777777777766555566777777777777777776555566667777777777
Q ss_pred CCcCCccCchh-hcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVGSLSPE-IYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g~iP~~-l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|.++ .+|.. +.++++|++|++++|.+++..+
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 77776 44443 4566677777777776665444
No 70
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=7e-13 Score=113.73 Aligned_cols=109 Identities=21% Similarity=0.239 Sum_probs=94.3
Q ss_pred EEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
.+.+++++++++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467899999998 5665443 7999999999999976667789999999999999999966666689999999999999
Q ss_pred CcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 155 NDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 155 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++++..+..+..+++|++|++++|+|++..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 99997766678899999999999999985444
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3.9e-13 Score=117.52 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=99.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.++ .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..++.+++|++|+|
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 36899999999998 666 69999999999999997763 457899999999999999999888889999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|++++..+..+..+++|++|++++|.+.+.+|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~ 154 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh
Confidence 99999988899999999999999999995556653
No 72
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=3e-13 Score=115.75 Aligned_cols=100 Identities=25% Similarity=0.257 Sum_probs=88.7
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCC
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 131 (368)
|.|..+.|.. ..++.|+|++|.|++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 6788888862 46899999999999888888999999999999999999766677899999999999999
Q ss_pred cCCCCCCcccCCCCCCCEEEccCCcCCccCc
Q 017648 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLS 162 (368)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP 162 (368)
+|++..+..+..+++|++|+|++|.|++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997666679999999999999999986543
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.44 E-value=4.2e-13 Score=126.75 Aligned_cols=122 Identities=22% Similarity=0.317 Sum_probs=107.8
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCC
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN 131 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 131 (368)
|.|..+.|.. .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6899999962 36899999999999877778999999999999999999888999999999999999999
Q ss_pred cCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCc--cCCC
Q 017648 132 NFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS--AAKK 187 (368)
Q Consensus 132 ~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g--~ip~ 187 (368)
.++ .+|..+. ++|++|+|++|++++..+..+.++++|++|++++|.++. ..+.
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence 998 7787765 899999999999996666678999999999999999963 4443
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=137.41 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=87.3
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 46888888888888777777888888888888888888777788888888888888888887 56665 6788888888
Q ss_pred cCCcCCc-cCchhhcCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
++|.+++ .+|..++++++|++|++++|.+++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 8888876 577788888888888888887764
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.44 E-value=1.5e-13 Score=123.61 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=92.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCC-CCcCCccccCCCCCCCEEEccC-CcCCCCCCcccCCCCCCCEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNS-FSGIIPEGFGELEELEVLDFGH-NNFSGPLPNDLGINHSLTIL 150 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~~P~~~~~l~~L~~L~Ls~-N~l~g~lP~~l~~l~~L~~L 150 (368)
..++.|+|++|++++..+..|.++++|++|+|++|. +++..+..|..+++|++|+|++ |.+++..+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468999999999997666678899999999999997 7765556788999999999998 99986656678889999999
Q ss_pred EccCCcCCccCchhhcCCCCCC---EEeccCC-CCCccCC
Q 017648 151 LLDNNDFVGSLSPEIYKLQVLS---ESQVDEG-QLSSAAK 186 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~l~~l~~L~---~L~L~~N-~l~g~ip 186 (368)
+|++|.+++ +|. +..+.+|+ +|++++| .+++..+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc
Confidence 999999885 776 77778887 8888888 7765443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=2.1e-13 Score=136.05 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=103.5
Q ss_pred CCCcceeEeC-CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccC-CCCCCCEEEccCCcCCCCCCc
Q 017648 62 PCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG-ELEELEVLDFGHNNFSGPLPN 139 (368)
Q Consensus 62 ~C~w~Gv~C~-~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~-~l~~L~~L~Ls~N~l~g~lP~ 139 (368)
.|.+.++.|. ..+++.|+|++|.|++..+..+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.|++. +
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~- 185 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K- 185 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-
Confidence 3556666665 46789999999999988888899999999999999999998888876 799999999999999965 3
Q ss_pred ccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 140 DLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 140 ~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.|++ +|.
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence 34468999999999999996 45558899999999999999996 554
No 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=7.4e-14 Score=116.36 Aligned_cols=105 Identities=17% Similarity=0.088 Sum_probs=93.7
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCC-CCcccCCCCCCCEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP-LPNDLGINHSLTIL 150 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~-lP~~l~~l~~L~~L 150 (368)
..+++.|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|++++|.+++. .+..++.+++|++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 35899999999999976 7799999999999999999988998888899999999999999963 34789999999999
Q ss_pred EccCCcCCccCc---hhhcCCCCCCEEeccC
Q 017648 151 LLDNNDFVGSLS---PEIYKLQVLSESQVDE 178 (368)
Q Consensus 151 ~Ls~N~l~g~iP---~~l~~l~~L~~L~L~~ 178 (368)
++++|.+++..+ ..+..+++|++|++++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999996655 4788999999999864
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=4.2e-13 Score=137.02 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=113.0
Q ss_pred CCCCCCCCCCCCCCCCC----cceeEeC------------------CCcEEEEEecCCCCcccCchhhcCCCCCCEEEee
Q 017648 48 GALTSWRSCDTENNPCS----WFGVECS------------------DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILR 105 (368)
Q Consensus 48 ~~l~~W~~~~~~~~~C~----w~Gv~C~------------------~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls 105 (368)
..+.+|. .+.+||. |.++.|+ ..+++.|++++|.+....+..+.++++|++|+|+
T Consensus 7 ~~l~~~~---~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~ 83 (597)
T 3oja_B 7 YNVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83 (597)
T ss_dssp ----CCC---SEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT
T ss_pred ccccCCC---CCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC
Confidence 3456776 4455663 7776664 0357889999999986555568899999999999
Q ss_pred cCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccC
Q 017648 106 NNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (368)
Q Consensus 106 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~i 185 (368)
+|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 99999888889999999999999999999888888999999999999999999554455789999999999999999877
Q ss_pred CC
Q 017648 186 KK 187 (368)
Q Consensus 186 p~ 187 (368)
|.
T Consensus 164 ~~ 165 (597)
T 3oja_B 164 DD 165 (597)
T ss_dssp TT
T ss_pred hh
Confidence 75
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.43 E-value=5.6e-13 Score=125.65 Aligned_cols=118 Identities=24% Similarity=0.371 Sum_probs=98.4
Q ss_pred CCCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccC
Q 017648 62 PCSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGH 130 (368)
Q Consensus 62 ~C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 130 (368)
.|.|..+.|.. ..++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 46899999962 3688999999999987777899999999999999999988899999999999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 131 NNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 131 N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
|.++ .+|..+. ++|+.|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 9998 6776654 67888888888887666666777777777777777774
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=7.6e-14 Score=147.94 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=107.3
Q ss_pred CCcceeEeC---CCcEEEEEecCCCCcc-----------------cCchhhc--CCCCCCEEEeecCCCCcCCccccCCC
Q 017648 63 CSWFGVECS---DGKVVNLNLKDLCLEG-----------------TLAPEIQ--SLTHIKSIILRNNSFSGIIPEGFGEL 120 (368)
Q Consensus 63 C~w~Gv~C~---~~~v~~L~L~~n~l~g-----------------~~p~~l~--~L~~L~~L~Ls~N~l~g~~P~~~~~l 120 (368)
+...|+.-. ..+++.|+|++|.|+| .+|..++ +|++|++|+|++|.+.|.+|..|.+|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 445554322 4689999999999998 4899888 99999999999999999999999999
Q ss_pred CCCCEEEccCCc-CCC-CCCcccCCCC-------CCCEEEccCCcCCccCch--hhcCCCCCCEEeccCCCCCccCC
Q 017648 121 EELEVLDFGHNN-FSG-PLPNDLGINH-------SLTILLLDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 121 ~~L~~L~Ls~N~-l~g-~lP~~l~~l~-------~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|++|+|++|+ ++| .+|..++.+. +|+.|+|++|+++ .+|. .+.++++|++|+|++|+++ .||
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 999999999998 998 8888776655 9999999999999 8898 8999999999999999998 888
No 81
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=134.40 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=92.2
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.|+|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 56666677776664333456777777777777777776666667777777777777777776666677777777777777
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCcccccccccccCcCChhHHHhhccCccccccccCCcCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIKWNGVLDEDTVQRRLLQINPFRNLKGRILG 226 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~l~ 226 (368)
+|++++..+..+..+++|++|+|++|+|+ ++|....+.... ...........|..+..++|..+.
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------c~c~~~~~~~~~--~~~~~~~~~~~C~~p~~~~g~~l~ 369 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLA------CDCRLLWVFRRR--WRLNFNRQQPTCATPEFVQGKEFK 369 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEE------CSGGGHHHHTTT--TSSCCTTCCCBEEESGGGTTCBGG
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCcc------CccchHhHHhhh--hccccCccCceeCCchHHcCCchh
Confidence 77777555555666777777777777765 444433221100 001112345678888888887764
No 82
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=8.1e-13 Score=127.46 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=99.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcc-cCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPND-LGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~ 151 (368)
.++++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.++ .+|.. ++.+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 47899999999999877778999999999999999999888888999999999999999999 55555 68899999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
|++|.+++..+..+..+++|++|++++|.+++.
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 999999987788899999999999999999853
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=2.5e-13 Score=127.38 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=93.0
Q ss_pred CcEEEEEecCCCCcccCchhhcCC-----CCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCC--CCccc--CC
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSL-----THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LPNDL--GI 143 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~--lP~~l--~~ 143 (368)
.+++.|+|++|.+++. |..+..+ ++|++|+|++|.+++..+..|..+++|++|+|++|++.|. ++..+ +.
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 4789999999999977 7777777 8999999999999987778899999999999999998765 34444 78
Q ss_pred CCCCCEEEccCCcCCc--cCch-hhcCCCCCCEEeccCCCCCccCC
Q 017648 144 NHSLTILLLDNNDFVG--SLSP-EIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 144 l~~L~~L~Ls~N~l~g--~iP~-~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+++|++|+|++|++++ .++. .+.++++|++|+|++|++++.+|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 8999999999999983 3333 34578899999999999988775
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4.2e-13 Score=115.17 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=90.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCC-CCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLT-HIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.++. ++. +..+. +|++|+|++|.+++. ..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 368999999999984 554 55555 999999999999974 6789999999999999999954334458899999999
Q ss_pred ccCCcCCccCch--hhcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGSLSP--EIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++|.++ .+|. .+..+++|++|++++|.++ .+|
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~ 129 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKK 129 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GST
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcH
Confidence 9999996 6776 7889999999999999997 344
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=2.7e-13 Score=136.36 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=106.0
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCC-CCCcccCCCCCCCEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG-PLPNDLGINHSLTIL 150 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L 150 (368)
..++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++ .+|..++++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 3589999999999998888889999999999999999998777779999999999999999986 467789999999999
Q ss_pred EccCCcCCccCc-hhhcCCCCCCEEeccCCCCCccCCCC
Q 017648 151 LLDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKKE 188 (368)
Q Consensus 151 ~Ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~l~g~ip~~ 188 (368)
+|++|.+.+.+| ..+.++++|++|++++|.+++.+|..
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 999999766776 57899999999999999999988764
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.39 E-value=9.4e-13 Score=132.78 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=83.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.++++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|++++..+..++++++|++|+|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 46777777777777665666777777777777777777666677777777777777777777544445777788888888
Q ss_pred cCCcCCc-cCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVG-SLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|.+++ .+|..++++++|++|++++|++++..+
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 8887775 467778888888888888887776544
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=7.9e-13 Score=136.57 Aligned_cols=113 Identities=24% Similarity=0.228 Sum_probs=59.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|+++++|++|+|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 45555555555554444445555555555555555555555555555555555555555553222235555555555555
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|++++..|..++++++|++|++++|.+++..|
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCc
Confidence 555554444445555555555555555554444
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.38 E-value=9e-13 Score=139.88 Aligned_cols=115 Identities=20% Similarity=0.164 Sum_probs=73.0
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccc--cCCCCCCCEEEccCCcCCCCCC-cccCCCCCCCE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEG--FGELEELEVLDFGHNNFSGPLP-NDLGINHSLTI 149 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~--~~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~ 149 (368)
.+++.|+|++|.+.+..|..|.++.+|++|+|++|.+++.+|.. |.++++|++|+|++|.+.+..+ ..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 35666666666666666666666666666666666666655544 6666666666666666665433 35666666666
Q ss_pred EEccCCcCCccCchhhcCC--CCCCEEeccCCCCCccCCC
Q 017648 150 LLLDNNDFVGSLSPEIYKL--QVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 150 L~Ls~N~l~g~iP~~l~~l--~~L~~L~L~~N~l~g~ip~ 187 (368)
|+|++|.+++..+..+..+ .+|+.|++++|.+.+.+|.
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence 6666666666666666555 5666666666666665553
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=4.1e-13 Score=136.16 Aligned_cols=113 Identities=27% Similarity=0.329 Sum_probs=89.3
Q ss_pred CCCCC-----Cccee-EeCCCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCc
Q 017648 59 ENNPC-----SWFGV-ECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132 (368)
Q Consensus 59 ~~~~C-----~w~Gv-~C~~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~ 132 (368)
+.++| .|.|+ .|..++++.|+|++|+|++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|+|++|+
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNR 111 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC
T ss_pred cCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC
Confidence 45567 69999 7877789999999999987 777663 78999999999988 677 457888888888888
Q ss_pred CCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 133 FSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 133 l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++ +|. +.. +|+.|+|++|+|++ +|. .+++|++|+|++|.|++ +|.
T Consensus 112 l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~ 157 (571)
T 3cvr_A 112 LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE 157 (571)
T ss_dssp CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence 886 776 554 88888888888886 666 56778888888888776 554
No 90
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=6.7e-14 Score=146.19 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=98.3
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|+|++|.|+ .+|..|.+|.+|++|+|++|.|+ .+|..|+.|++|++|+|++|.|+ .+|..|+.+++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 357999999999999 89999999999999999999999 88999999999999999999998 8999999999999999
Q ss_pred ccCCcCCccCchhhcCCC-CCCEEeccCCCCCccCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQ-VLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~-~L~~L~L~~N~l~g~ip~ 187 (368)
|++|.|+|.+|..+..+. .+..|+|++|.++|.+|.
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999999988775432 122356666777766665
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=125.15 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=101.4
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCc--ccCCCCCCCE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTI 149 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~ 149 (368)
..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.++ .+|. .+..+++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 357999999999999877888999999999999999999654555899999999999999999 4665 6889999999
Q ss_pred EEccCCc-CCccCchhhcCCCCCCEEeccCCCCCccCCCCc
Q 017648 150 LLLDNND-FVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQ 189 (368)
Q Consensus 150 L~Ls~N~-l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~ 189 (368)
|++++|+ +.+..+..+.++++|++|++++|.+++..|...
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 9999995 665556788999999999999999998877533
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=1.2e-12 Score=117.80 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=98.3
Q ss_pred CcEEEEEecCCC-CcccCchhhcCCCCCCEEEeec-CCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCC--
Q 017648 73 GKVVNLNLKDLC-LEGTLAPEIQSLTHIKSIILRN-NSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT-- 148 (368)
Q Consensus 73 ~~v~~L~L~~n~-l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~-- 148 (368)
.+++.|+|++|. +++..+..|.++++|++|+|++ |.+++..+..|..+++|++|++++|.+++ +|. +..+.+|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 579999999997 8865556799999999999998 99997666789999999999999999996 776 88888888
Q ss_pred -EEEccCC-cCCccCchhhcCCCCCC-EEeccCCCCCccCCC
Q 017648 149 -ILLLDNN-DFVGSLSPEIYKLQVLS-ESQVDEGQLSSAAKK 187 (368)
Q Consensus 149 -~L~Ls~N-~l~g~iP~~l~~l~~L~-~L~L~~N~l~g~ip~ 187 (368)
+|++++| ++++..+..+..+.+|+ +|++++|.++ .+|.
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 9999999 99866666788999999 9999999998 6665
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=130.10 Aligned_cols=112 Identities=23% Similarity=0.321 Sum_probs=55.5
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCc--CCccccCCCCCCCEEEccCCcCCCCCCcc-cCCC------
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPND-LGIN------ 144 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g--~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-l~~l------ 144 (368)
+++.|+|++|.+++.+|..+..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++.+|.. +..+
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 44455555555554444444444445555554444443 33334444444444444444444333322 2222
Q ss_pred ----------------CCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 145 ----------------HSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 145 ----------------~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|+.|+|++|+++ .+|..+..+++|++|++++|+|+ .+|.
T Consensus 405 ~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp ECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred ECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 35555555555555 55555556666666666666665 3443
No 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=6.3e-13 Score=114.08 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=93.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCc--ccCCCCCCCEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN--DLGINHSLTIL 150 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L 150 (368)
.+++.|+|++|.|++. ..+..+++|++|+|++|.+++..+..+..+++|++|+|++|.+. .+|. .+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 3799999999999975 67999999999999999999654455589999999999999996 6776 78899999999
Q ss_pred EccCCcCCccCchh----hcCCCCCCEEeccCCCCC
Q 017648 151 LLDNNDFVGSLSPE----IYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~----l~~l~~L~~L~L~~N~l~ 182 (368)
+|++|.++ .+|.. +..+++|++|++++|.+.
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999998 66764 889999999999999764
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.33 E-value=1.6e-12 Score=131.47 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=47.8
Q ss_pred cCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEccCCcCCccCchh-hcCCCC
Q 017648 94 QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPE-IYKLQV 170 (368)
Q Consensus 94 ~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g--~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~ 170 (368)
..+++|++|+|++|.+++.+|..+..+++|++|+|++|++++ .+|..++.+++|+.|+|++|++++.+|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 344555555555555555555555555555555555555553 12234455555555555555555434432 444555
Q ss_pred CCEEeccCCCCCccCC
Q 017648 171 LSESQVDEGQLSSAAK 186 (368)
Q Consensus 171 L~~L~L~~N~l~g~ip 186 (368)
|++|++++|++++.+|
T Consensus 430 L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CCEEECCSSCCCGGGG
T ss_pred CCEEECCCCCCCcchh
Confidence 5555555555554444
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=122.43 Aligned_cols=109 Identities=21% Similarity=0.177 Sum_probs=59.7
Q ss_pred cEEEEEecCCCCcccCchhh--cCCCCCCEEEeecCCCCcCCc----cccCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 017648 74 KVVNLNLKDLCLEGTLAPEI--QSLTHIKSIILRNNSFSGIIP----EGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l--~~L~~L~~L~Ls~N~l~g~~P----~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (368)
++++|+|++|.+.+..|..+ ..+.+|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+..+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 36666666666666666555 556666666666666665433 223455566666666666655555555566666
Q ss_pred CEEEccCCcCCcc--Cch--hhcCCCCCCEEeccCCCCC
Q 017648 148 TILLLDNNDFVGS--LSP--EIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 148 ~~L~Ls~N~l~g~--iP~--~l~~l~~L~~L~L~~N~l~ 182 (368)
++|+|++|++.+. ++. .+..+++|++|+|++|+++
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 6666666655432 111 1234445555555555443
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=6.1e-13 Score=124.54 Aligned_cols=114 Identities=12% Similarity=0.024 Sum_probs=74.9
Q ss_pred CcEEEEEecCCCCcccCc----hhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCC--CC--cccCCC
Q 017648 73 GKVVNLNLKDLCLEGTLA----PEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGP--LP--NDLGIN 144 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~--lP--~~l~~l 144 (368)
.+++.|+|++|.+++..+ ..+..+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+. ++ ..++.+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 357777777777776544 2345677777777777777766667777777777777777776542 21 223566
Q ss_pred CCCCEEEccCCcCCccCch----hhcCCCCCCEEeccCCCCCccCCC
Q 017648 145 HSLTILLLDNNDFVGSLSP----EIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 145 ~~L~~L~Ls~N~l~g~iP~----~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
++|++|+|++|+++ .++. .+..+++|++|+|++|++++.+|.
T Consensus 197 ~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 197 PAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred CCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 77777777777775 3332 235667777777777777776554
No 98
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=5.6e-12 Score=108.25 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=78.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|++..|..|.++++|++|+|++|.|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 46899999999999888889999999999999999999755566799999999999999999655555999999999999
Q ss_pred cCCcCCcc
Q 017648 153 DNNDFVGS 160 (368)
Q Consensus 153 s~N~l~g~ 160 (368)
++|.|...
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 99999844
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2.1e-12 Score=128.73 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=61.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCcc----------------ccCCCCCCCEEEccCCcCCCC
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPE----------------GFGELEELEVLDFGHNNFSGP 136 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~----------------~~~~l~~L~~L~Ls~N~l~g~ 136 (368)
.+++.|+|++|.+++..+ +..+++|++|+|++|.+++..+. ....+++|+.|+|++|.+++.
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~ 135 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSG
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCC
Confidence 356666666666655443 55555555555555554431110 001234455555555555555
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCchhhc-CCCCCCEEeccCCCCCcc
Q 017648 137 LPNDLGINHSLTILLLDNNDFVGSLSPEIY-KLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 137 lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~L~L~~N~l~g~ 184 (368)
.|..++.+++|+.|+|++|.+++.+|..+. .+++|++|+|++|.|++.
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 555666666666777777766666666554 566666666666666654
No 100
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=8.1e-12 Score=117.68 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=95.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|++++|.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|
T Consensus 171 ~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 171 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 57899999999988 4665544 78999999999999888888999999999999999999877778888999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|+++ .+|..+..+++|++|++++|++++.-+
T Consensus 248 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence 999998 888889999999999999999986433
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=4.7e-12 Score=118.90 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=84.3
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCcccc-CCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGF-GELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~-~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++. + ....+++|+.|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEE
Confidence 457788888888887666678888888888888888887666665 3678888888888888743 3 334578888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++|++++ +|..+..+++|++|+|++|++++ +|.
T Consensus 198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~ 231 (317)
T 3o53_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK 231 (317)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred CCCCcCCc-chhhhcccCcccEEECcCCcccc-hhh
Confidence 88888884 55557788888888888888874 554
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=1.3e-11 Score=114.58 Aligned_cols=106 Identities=23% Similarity=0.322 Sum_probs=80.5
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++..+ +..+++|++|+|++|.+++ ++ .+..+++|++|+|++|++++ + ..+..+++|+.|+|
T Consensus 68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence 578888888888886433 7888888888888888875 33 47788888888888888875 3 46777788888888
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|++++. ..+..+++|++|++++|.+++..+
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 88888754 567778888888888888876544
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=7e-12 Score=117.72 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=94.5
Q ss_pred CcEEEEEecCCCCcccCchhh-cCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEI-QSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l-~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++|.+++..+..+ ..+++|++|+|++|.+++. + ....+++|++|+|++|.+++ +|..+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 579999999999998777776 4799999999999999964 4 34469999999999999995 666799999999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
|++|+++ .+|..+..+++|++|++++|+++
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999 68888999999999999999998
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=7.4e-12 Score=127.09 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=91.8
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCC-CcccCCCCCCCEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPL-PNDLGINHSLTIL 150 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~l-P~~l~~l~~L~~L 150 (368)
..+++.|+|++|.|+ .+|..|++|++|+.|+|++|.|++ +| .|+.+++|++|+|++|+|++.. |..++.+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 357999999999999 899999999999999999999997 78 8999999999999999999876 9999999999999
Q ss_pred EccCCcCCccCchh---hcCCCCCCEEec
Q 017648 151 LLDNNDFVGSLSPE---IYKLQVLSESQV 176 (368)
Q Consensus 151 ~Ls~N~l~g~iP~~---l~~l~~L~~L~L 176 (368)
+|++|.|++..|.. +..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999765532 345889999875
No 105
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.27 E-value=4.7e-12 Score=119.50 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=95.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.|++++|.+++ +|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|+
T Consensus 173 ~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 173 KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 68889999999985 666554 789999999999998777889999999999999999998777788999999999999
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|+++ .+|..+..+++|++|++++|++++.-+
T Consensus 250 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp SSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 99999 889889999999999999999986433
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=2.2e-11 Score=111.53 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=78.9
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.|++.. . +..+++|++|+|++|.+++ +|.. .. ++|++|+|++|++++ ++ .+..+++|+.|+|
T Consensus 63 ~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 46888888888888543 3 7888888888888888875 4432 23 788888888888885 33 5778888888888
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
++|++++ ++ .+..+++|++|++++|++++.
T Consensus 136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 8888885 44 677888888888888888765
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=1.8e-11 Score=113.64 Aligned_cols=104 Identities=24% Similarity=0.324 Sum_probs=91.1
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|+|++|.+++ ++ .+..+++|++|+|++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|+.|+
T Consensus 89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 4679999999999986 43 49999999999999999986 3 4688999999999999999964 6788999999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
|++|++++..+ +..+++|++|++++|.+++
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 99999996544 8899999999999999986
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=2.4e-11 Score=111.26 Aligned_cols=103 Identities=26% Similarity=0.372 Sum_probs=89.9
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|++++|+++ .++ .+..+++|++|+|++|.+++. +. +..+++|++|+|++|++++ ++.... .+|+.|+|
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcccc--CcccEEEc
Confidence 47899999999998 465 689999999999999999964 44 9999999999999999995 554333 89999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
++|++++ ++ .+..+++|++|+|++|++++.
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCcCCCC
Confidence 9999995 44 588999999999999999874
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.25 E-value=2.4e-11 Score=115.00 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=74.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++.. . +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|+.|+|
T Consensus 221 ~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 45677777777766432 2 6677777777777777764 3 356677777777777777764 3 34666777777777
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|.+++..+..+..+++|++|++++|++++..|
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 7777777767777777777777777777776555
No 110
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.24 E-value=4e-11 Score=112.21 Aligned_cols=103 Identities=25% Similarity=0.413 Sum_probs=63.6
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++. +. +..+++|++|+|++|.+++ ++ .+..+++|++|+|++|.+++ ++ .+..+++|+.|+|
T Consensus 63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEEC
Confidence 4567777777776643 33 6666777777777777664 33 46666666666666666664 33 2566666666666
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
++|.+++. +. +..+++|++|++++|.+++
T Consensus 137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CSSCCCCC-GG-GGGCTTCCEEECCSSCCCC
T ss_pred CCCccCcC-cc-ccCCCCccEEEccCCcCCC
Confidence 66666633 22 5566666666666666654
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=2.6e-11 Score=113.49 Aligned_cols=107 Identities=22% Similarity=0.336 Sum_probs=82.6
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|+|++|.+++ ++ .+..+++|++|+|++|.+++ ++. +..+++|++|+|++|.+++. +. ++.+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS 157 (308)
T ss_dssp CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence 3578889999998885 33 68888888999998888885 443 78888888888888888753 33 77788888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
|++|++++ ++. +..+++|++|++++|.+++..+
T Consensus 158 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 158 IGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred ccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh
Confidence 88888874 444 7788888888888888876433
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=1.5e-11 Score=124.76 Aligned_cols=97 Identities=24% Similarity=0.233 Sum_probs=60.0
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.|+|++|.|++ +|. .+++|++|+|++|.|++ +|. .+++|++|+|++|.|++ +|. +. .+|+.|+|+
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 55666666666665 444 45677777777777775 554 45677777777777775 665 44 667777777
Q ss_pred CCcCCccCchhhcCCCCC-------CEEeccCCCCCccCCC
Q 017648 154 NNDFVGSLSPEIYKLQVL-------SESQVDEGQLSSAAKK 187 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L-------~~L~L~~N~l~g~ip~ 187 (368)
+|+|+ .+|. +.. +| +.|+|++|+|+ .||.
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 77666 5555 433 45 66666666666 3454
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.21 E-value=1.8e-11 Score=115.79 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=92.5
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|+|++|.+++. +.+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+..+..++.+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 35799999999999863 468999999999999999996 4 4588999999999999999988888899999999999
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
|++|.+++..| +..+++|++|++++|.|+
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999997666 889999999999999985
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=4.6e-11 Score=122.07 Aligned_cols=106 Identities=23% Similarity=0.325 Sum_probs=71.0
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+|+.|+|++|.|.+..+ +..|++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence 467777777777775433 6777777777777777764 33 56677777777777777764 3 34666677777777
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|.+++. ..+..+++|+.|+|++|.|++..|
T Consensus 139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 77777643 456666677777777776666544
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=8.1e-14 Score=122.01 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=94.9
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|+|++|.+++ +| .+..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++ +| .++.+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 3578999999999986 67 8899999999999999998 688878788999999999999986 55 688889999999
Q ss_pred ccCCcCCccCc-hhhcCCCCCCEEeccCCCCCccCCC
Q 017648 152 LDNNDFVGSLS-PEIYKLQVLSESQVDEGQLSSAAKK 187 (368)
Q Consensus 152 Ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~l~g~ip~ 187 (368)
|++|++++.-. ..+..+++|++|++++|.+++.+|.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999984322 4788999999999999999877663
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=8.9e-14 Score=121.76 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=91.3
Q ss_pred cEEEEEecCCCCcccCch------hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 017648 74 KVVNLNLKDLCLEGTLAP------EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~------~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (368)
+++.++++++.+.|.+|. .+..+++|++|+|++|.+++ +| .+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 455566666666666665 89999999999999999996 77 8999999999999999999 788888888999
Q ss_pred CEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 148 TILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 148 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+.|+|++|++++ +| .+..+++|++|++++|++++
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence 999999999995 56 68889999999999999985
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.19 E-value=6.9e-11 Score=116.82 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=53.6
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLD 153 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls 153 (368)
+++.|+|++|.+++. + +..+++|++|+|++|.+++. + ++.+++|++|++++|++++ ++ ++.+++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 455555555555542 2 55555555555555555542 2 5555555555555555554 32 5555555555555
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAA 185 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~i 185 (368)
+|++++ ++ ++++++|++|++++|++.|.+
T Consensus 136 ~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 136 RNTLTE-ID--VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TSCCSC-CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred CCccce-ec--cccCCcCCEEECCCCCccccc
Confidence 555554 22 455555666666655544444
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=4.9e-11 Score=121.87 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=77.4
Q ss_pred CCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 72 DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 72 ~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
..+++.|+|++|.|.+ ++ .+..|++|++|+|++|.+.+ + ..+..|++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 86 l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp CTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 4567888888888875 33 57778888888888888875 3 3577778888888888888753 5677777888888
Q ss_pred ccCCcCCccCchhhcCCCCCCEEeccCCCCCc
Q 017648 152 LDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 152 Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
|++|.+++..| +..+++|+.|+|++|+|++
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 88888776555 7777778888888877775
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.18 E-value=6e-11 Score=117.21 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=75.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+.+..+ +..+++|++|+|++|.+++..+ +..+++|++|+|++|++.+..+ ++.+++|+.|+|
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 467888888888876544 7777888888888888875433 7777788888888888775432 667777777777
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
++|++++..| +..+++|+.|++++|.+++.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 7777776554 56777777777777777654
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.15 E-value=6.3e-11 Score=117.07 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=91.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|+|++|.+++..+ +..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++..| +..+++|+.|++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 578999999999986543 8889999999999999987544 7889999999999999997655 778899999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
++|.+++. ..+.++++|+.|++++|++++..|
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 99999865 468899999999999999998877
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.14 E-value=8.4e-12 Score=120.22 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=63.8
Q ss_pred CcEEEEEecCCCCc-ccCc---hhhcCCCCCCEEEeecCCCC--c---CCccccCCCCCCCEEEccCCcCC----CCCCc
Q 017648 73 GKVVNLNLKDLCLE-GTLA---PEIQSLTHIKSIILRNNSFS--G---IIPEGFGELEELEVLDFGHNNFS----GPLPN 139 (368)
Q Consensus 73 ~~v~~L~L~~n~l~-g~~p---~~l~~L~~L~~L~Ls~N~l~--g---~~P~~~~~l~~L~~L~Ls~N~l~----g~lP~ 139 (368)
.+++.|+|++|.++ +.++ ..+..+++|++|+|++|.++ | .++..+..+++|++|+|++|.++ +.++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 35666666666665 3333 34555666666666666665 2 23335556666666666666664 44555
Q ss_pred ccCCCCCCCEEEccCCcCCcc----Cchhh--cCCCCCCEEeccCCCCCc
Q 017648 140 DLGINHSLTILLLDNNDFVGS----LSPEI--YKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 140 ~l~~l~~L~~L~Ls~N~l~g~----iP~~l--~~l~~L~~L~L~~N~l~g 183 (368)
.+..+++|+.|+|++|.+++. ++..+ +.+++|++|+|++|.+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 555666666666666666544 34444 225666666666666665
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.13 E-value=6.3e-11 Score=112.77 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=89.1
Q ss_pred CCcceeEeCC-----------CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCc-cccCCCCCCCE-EEcc
Q 017648 63 CSWFGVECSD-----------GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIP-EGFGELEELEV-LDFG 129 (368)
Q Consensus 63 C~w~Gv~C~~-----------~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P-~~~~~l~~L~~-L~Ls 129 (368)
|.|..|.|+. .++++|+|++|+|+...+..|.+|++|++|+|++|.+.+.+| ..|.++++|+. +++.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 6888999962 368899999999985444568999999999999999877776 45788888775 6667
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccC
Q 017648 130 HNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDE 178 (368)
Q Consensus 130 ~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 178 (368)
.|++++..|..|..+++|++|++++|++++..+..+....++..|++.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 7899876677889999999999999998855444444445555565544
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.12 E-value=7.6e-12 Score=117.79 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=97.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcC-CccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5788999999999877655 67899999999999999876 888899999999999999999988888899999999999
Q ss_pred ccCC-cCCcc-CchhhcCCCCCCEEeccCC-CCCcc
Q 017648 152 LDNN-DFVGS-LSPEIYKLQVLSESQVDEG-QLSSA 184 (368)
Q Consensus 152 Ls~N-~l~g~-iP~~l~~l~~L~~L~L~~N-~l~g~ 184 (368)
|++| .+++. ++..+.++++|++|++++| .+++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 9999 68763 7777889999999999999 88864
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=9.3e-11 Score=111.13 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=76.8
Q ss_pred CcEEEEEecC-CCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 017648 73 GKVVNLNLKD-LCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILL 151 (368)
Q Consensus 73 ~~v~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 151 (368)
.+++.|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..|.+|++|++|+|++|+|++..+..+..+. |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 4799999996 999988878899999999999999999998899999999999999999999965444455555 99999
Q ss_pred ccCCcCCcc
Q 017648 152 LDNNDFVGS 160 (368)
Q Consensus 152 Ls~N~l~g~ 160 (368)
|.+|.|...
T Consensus 110 l~~N~~~c~ 118 (347)
T 2ifg_A 110 LSGNPLHCS 118 (347)
T ss_dssp CCSSCCCCC
T ss_pred eeCCCccCC
Confidence 999999854
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.11 E-value=1.6e-10 Score=114.13 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=63.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.+++.|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|+.|+|
T Consensus 148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence 45666777776555555 35666677777777776665 44 56666666666666666643 3566666666666
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCCCCcc
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
++|++++ +| +..+++|++|++++|+|++.
T Consensus 220 s~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 220 SSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred cCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 6666665 44 55666666666666666654
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=2.5e-11 Score=124.43 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=53.3
Q ss_pred CCCCCCCcceeEe--------CCCcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEcc
Q 017648 58 TENNPCSWFGVEC--------SDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFG 129 (368)
Q Consensus 58 ~~~~~C~w~Gv~C--------~~~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 129 (368)
.+.++|.|.|..| ....++.|++++|+|+ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|+
T Consensus 17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls 89 (622)
T 3g06_A 17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVS 89 (622)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcC
Confidence 4456788866432 2334667777777776 5665554 56666666666666 3554 45566666666
Q ss_pred CCcCCCCCCcccCCCCCCCEEEccCCcCC
Q 017648 130 HNNFSGPLPNDLGINHSLTILLLDNNDFV 158 (368)
Q Consensus 130 ~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~ 158 (368)
+|+|+ .+|. .+++|++|+|++|+++
T Consensus 90 ~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 90 GNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp SCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 66665 3444 3455555555555555
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=1.3e-11 Score=116.29 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=97.6
Q ss_pred CcEEEEEecCCCCccc-CchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCC-cCCC-CCCcccCCCCCCCE
Q 017648 73 GKVVNLNLKDLCLEGT-LAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHN-NFSG-PLPNDLGINHSLTI 149 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N-~l~g-~lP~~l~~l~~L~~ 149 (368)
.+++.|+|++|.+++. ++..+..+++|++|+|++|.+++.++..+..+++|++|+|++| .+++ .++..+..+++|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5789999999999876 8888999999999999999999888888999999999999999 6775 36666888999999
Q ss_pred EEccCC-cCCcc-CchhhcCCC-CCCEEeccCC--CCC-ccCC
Q 017648 150 LLLDNN-DFVGS-LSPEIYKLQ-VLSESQVDEG--QLS-SAAK 186 (368)
Q Consensus 150 L~Ls~N-~l~g~-iP~~l~~l~-~L~~L~L~~N--~l~-g~ip 186 (368)
|+|++| .+++. ++..+..++ +|++|++++| .++ +.++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 999999 88864 677788899 9999999999 565 3444
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.11 E-value=2.7e-10 Score=112.50 Aligned_cols=102 Identities=29% Similarity=0.373 Sum_probs=58.4
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
.++++|+|++|.+++ +| ++.++++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .++.+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356677777777765 55 47777777777777777764 44332 355555555555554 44 3555555555555
Q ss_pred cCCcCCc-------------------cCchhhcCCCCCCEEeccCCCCCc
Q 017648 153 DNNDFVG-------------------SLSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 153 s~N~l~g-------------------~iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
++|++++ .+| .++.+++|++|++++|++++
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 5554443 333 24455555555555555554
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=1e-10 Score=115.45 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=35.5
Q ss_pred CCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCc--cCCC
Q 017648 121 EELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSS--AAKK 187 (368)
Q Consensus 121 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g--~ip~ 187 (368)
++|++|++++|++++ +|.. +++|+.|+|++|+++ .+|. .+++|++|++++|+++| .+|.
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence 356666666666664 4443 356666666666666 4554 35566666666666666 5554
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=2.7e-10 Score=116.75 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=39.6
Q ss_pred CCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEec
Q 017648 97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQV 176 (368)
Q Consensus 97 ~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 176 (368)
++|++|+|++|.+++ +| ..+++|++|+|++|.|+ .+|. .+.+|+.|+|++|+|+ .+|..+.++++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 334444444444443 33 23344555555555554 3443 3345555555555555 44555555555555555
Q ss_pred cCCCCCccCC
Q 017648 177 DEGQLSSAAK 186 (368)
Q Consensus 177 ~~N~l~g~ip 186 (368)
++|+|+|.+|
T Consensus 292 ~~N~l~~~~~ 301 (622)
T 3g06_A 292 EGNPLSERTL 301 (622)
T ss_dssp CSCCCCHHHH
T ss_pred cCCCCCCcCH
Confidence 5555554433
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.05 E-value=4.4e-11 Score=115.19 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=65.8
Q ss_pred CcEEEEEecCCCCc--c---cCchhhcCCCCCCEEEeecCCCC----cCCccccCCCCCCCEEEccCCcCCCC----CCc
Q 017648 73 GKVVNLNLKDLCLE--G---TLAPEIQSLTHIKSIILRNNSFS----GIIPEGFGELEELEVLDFGHNNFSGP----LPN 139 (368)
Q Consensus 73 ~~v~~L~L~~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~~P~~~~~l~~L~~L~Ls~N~l~g~----lP~ 139 (368)
.+++.|+|++|+++ | .++..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 35666666666665 2 22325556666666666666664 44555566666666666666666543 344
Q ss_pred cc--CCCCCCCEEEccCCcCCc----cCchhh-cCCCCCCEEeccCCCCCccC
Q 017648 140 DL--GINHSLTILLLDNNDFVG----SLSPEI-YKLQVLSESQVDEGQLSSAA 185 (368)
Q Consensus 140 ~l--~~l~~L~~L~Ls~N~l~g----~iP~~l-~~l~~L~~L~L~~N~l~g~i 185 (368)
.+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 44 235666666666666665 355555 44566666666666666443
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=5.3e-11 Score=113.76 Aligned_cols=113 Identities=22% Similarity=0.230 Sum_probs=78.1
Q ss_pred cEEEEEecCCCCcccCchhhcCC-----CCCCEEEeecCCCCcCCccccC----CC-CCCCEEEccCCcCCCCCCccc--
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSL-----THIKSIILRNNSFSGIIPEGFG----EL-EELEVLDFGHNNFSGPLPNDL-- 141 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~~P~~~~----~l-~~L~~L~Ls~N~l~g~lP~~l-- 141 (368)
++++|+|++|.+++..+..+..+ .+|++|+|++|.+++..+..+. .+ ++|++|+|++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 68888888888877666666654 7888888888888766655433 33 778888888888876554443
Q ss_pred --CC-CCCCCEEEccCCcCCccC----chhhcCCC-CCCEEeccCCCCCccCC
Q 017648 142 --GI-NHSLTILLLDNNDFVGSL----SPEIYKLQ-VLSESQVDEGQLSSAAK 186 (368)
Q Consensus 142 --~~-l~~L~~L~Ls~N~l~g~i----P~~l~~l~-~L~~L~L~~N~l~g~ip 186 (368)
.. ..+|++|+|++|.+++.- +..+..+. +|++|+|++|++++..+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 23 257888888888887533 33445554 78888888888876544
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=9.9e-11 Score=111.89 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=92.9
Q ss_pred CcEEEEEecCCCCcccCc----hhhcCCC-CCCEEEeecCCCCcCCccccCCC-----CCCCEEEccCCcCCCCCCcccC
Q 017648 73 GKVVNLNLKDLCLEGTLA----PEIQSLT-HIKSIILRNNSFSGIIPEGFGEL-----EELEVLDFGHNNFSGPLPNDLG 142 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~~P~~~~~l-----~~L~~L~Ls~N~l~g~lP~~l~ 142 (368)
.+++.|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999997666 6788898 89999999999998877777765 9999999999999977766444
Q ss_pred ----CC-CCCCEEEccCCcCCccCchhhc----C-CCCCCEEeccCCCCCc
Q 017648 143 ----IN-HSLTILLLDNNDFVGSLSPEIY----K-LQVLSESQVDEGQLSS 183 (368)
Q Consensus 143 ----~l-~~L~~L~Ls~N~l~g~iP~~l~----~-l~~L~~L~L~~N~l~g 183 (368)
.+ ++|+.|+|++|.+++..+..+. . ..+|++|+|++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 44 8999999999999876665543 3 3699999999999985
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.97 E-value=9.6e-10 Score=104.55 Aligned_cols=108 Identities=8% Similarity=0.075 Sum_probs=90.6
Q ss_pred EEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCc-ccCCCCCCCE-EEcc
Q 017648 76 VNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPN-DLGINHSLTI-LLLD 153 (368)
Q Consensus 76 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~-~l~~l~~L~~-L~Ls 153 (368)
++++.++++|+ .+|..+. .++++|+|++|+|+..-+..|.+|++|++|+|++|++.+.+|. .|.++++|+. ++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35788999999 7887763 6899999999999954446799999999999999999877775 4788888764 7778
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCCCccCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAK 186 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip 186 (368)
+|++++..|..+..+++|++|++++|.+++..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCc
Confidence 899997777889999999999999999986544
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.84 E-value=2e-10 Score=112.75 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=57.8
Q ss_pred CcEEEEEecCCCCccc----CchhhcCCCCCCEEEeecCCCCcCCccccC-----CCCCCCEEEccCCcCCCC----CCc
Q 017648 73 GKVVNLNLKDLCLEGT----LAPEIQSLTHIKSIILRNNSFSGIIPEGFG-----ELEELEVLDFGHNNFSGP----LPN 139 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~-----~l~~L~~L~Ls~N~l~g~----lP~ 139 (368)
.+++.|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+. ..++|++|+|++|.+++. ++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 4677777777777653 455566667777777777766543222221 124555555555555533 233
Q ss_pred ccCCCCCCCEEEccCCcCCccCchhhcC-----CCCCCEEeccCCCCC
Q 017648 140 DLGINHSLTILLLDNNDFVGSLSPEIYK-----LQVLSESQVDEGQLS 182 (368)
Q Consensus 140 ~l~~l~~L~~L~Ls~N~l~g~iP~~l~~-----l~~L~~L~L~~N~l~ 182 (368)
.+..+++|+.|+|++|.+++..+..+.. .++|++|++++|.++
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 3444455555555555554333322221 345555555555554
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=1.3e-10 Score=106.52 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=56.3
Q ss_pred CCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEccCCcCCccCchhhcCCC--CCCEEeccCCCCCccCC
Q 017648 118 GELEELEVLDFGHNNFSG--PLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQ--VLSESQVDEGQLSSAAK 186 (368)
Q Consensus 118 ~~l~~L~~L~Ls~N~l~g--~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~l~g~ip 186 (368)
.++++|+.|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 458899999999999997 5566777899999999999999965 3445454 99999999999998776
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.76 E-value=6e-10 Score=109.24 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=80.8
Q ss_pred CcEEEEEecCCCCcccC----chh-hcCCCCCCEEEeecCCCCcC----CccccCCCCCCCEEEccCCcCCCCCCcccC-
Q 017648 73 GKVVNLNLKDLCLEGTL----APE-IQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGPLPNDLG- 142 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~----p~~-l~~L~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~- 142 (368)
.+++.|+|++|.+++.- ... +..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+.+..+..+.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 57888888888877532 122 23578888888888888754 566677788888888888888644333332
Q ss_pred ----CCCCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCCcc
Q 017648 143 ----INHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSSA 184 (368)
Q Consensus 143 ----~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~g~ 184 (368)
..++|+.|+|++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 235888888888888765 566677778888888888888754
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.71 E-value=3e-09 Score=102.26 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=51.2
Q ss_pred cEEEEEecCCCCcccCchh-hcCCCCCCEEEeecCCCCcCCcccc-----CCCCCCCEEEccCCcCCC----CCCcccCC
Q 017648 74 KVVNLNLKDLCLEGTLAPE-IQSLTHIKSIILRNNSFSGIIPEGF-----GELEELEVLDFGHNNFSG----PLPNDLGI 143 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~~P~~~-----~~l~~L~~L~Ls~N~l~g----~lP~~l~~ 143 (368)
+++.|+|++|.|+..-... ...+.+|++|+|++|.++......+ ....+|++|+|++|.++. .+...+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 5666666666654321111 1223455556666665543222222 233455555555555542 12222344
Q ss_pred CCCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCC
Q 017648 144 NHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 144 l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
+++|++|+|++|.++.. +...+....+|++|+|++|.++
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 45555555555555421 2333444455555555555554
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=5e-09 Score=95.86 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=66.9
Q ss_pred cCCCCCCEEEeecCCCCc--CCccccCCCCCCCEEEccCCcCCCCCCcccCCCC--CCCEEEccCCcCCccCch------
Q 017648 94 QSLTHIKSIILRNNSFSG--IIPEGFGELEELEVLDFGHNNFSGPLPNDLGINH--SLTILLLDNNDFVGSLSP------ 163 (368)
Q Consensus 94 ~~L~~L~~L~Ls~N~l~g--~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~--~L~~L~Ls~N~l~g~iP~------ 163 (368)
.++++|+.|+|++|.|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568999999999999998 5567777899999999999999964 3444444 999999999999987763
Q ss_pred -hhcCCCCCCEEe
Q 017648 164 -EIYKLQVLSESQ 175 (368)
Q Consensus 164 -~l~~l~~L~~L~ 175 (368)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367889999886
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=7.5e-09 Score=99.49 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=70.9
Q ss_pred cEEEEEecCCCCcccCchhh-----cCCCCCCEEEeecCCCCc----CCccccCCCCCCCEEEccCCcCCCC----CCcc
Q 017648 74 KVVNLNLKDLCLEGTLAPEI-----QSLTHIKSIILRNNSFSG----IIPEGFGELEELEVLDFGHNNFSGP----LPND 140 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l-----~~L~~L~~L~Ls~N~l~g----~~P~~~~~l~~L~~L~Ls~N~l~g~----lP~~ 140 (368)
+++.|+|++|.|+..-...+ .....|++|+|++|.++. .+...+..+++|++|+|++|.+.+. +...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 57778888887764322222 235677888888887754 2344455677788888888877632 2344
Q ss_pred cCCCCCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCCc
Q 017648 141 LGINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 141 l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~g 183 (368)
+...++|+.|+|++|.++.. +...+...++|++|+|++|.|+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 55566788888888877642 33445556778888888887763
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=2.2e-08 Score=86.56 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCcEEEEEecCC-CCccc----CchhhcCCCCCCEEEeecCCCCcC----CccccCCCCCCCEEEccCCcCCCC----CC
Q 017648 72 DGKVVNLNLKDL-CLEGT----LAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP 138 (368)
Q Consensus 72 ~~~v~~L~L~~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~g~----lP 138 (368)
...+++|+|++| .|... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 357999999999 88742 445677789999999999999743 344555668899999999999843 34
Q ss_pred cccCCCCCCCEEEc--cCCcCCcc----CchhhcCCCCCCEEeccCCCCC
Q 017648 139 NDLGINHSLTILLL--DNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 139 ~~l~~l~~L~~L~L--s~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
..+.....|+.|+| ++|.+... +-..+...++|++|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 55667789999999 88999743 3445666789999999999875
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.48 E-value=2.3e-08 Score=101.12 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=54.2
Q ss_pred CcEEEEEecCCCCcccCchhhcC-CCCCCEEEee----cCCCCcC-----CccccCC-----------------------
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQS-LTHIKSIILR----NNSFSGI-----IPEGFGE----------------------- 119 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~-L~~L~~L~Ls----~N~l~g~-----~P~~~~~----------------------- 119 (368)
.+++.|+|..|.+++.....+.. +++|++|+|+ .|.+++. ++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 35666666666666554444443 5566666664 4445432 1122333
Q ss_pred ----CCCCCEEEccCCcCCC-CCCcccCCCCCCCEEEccCCcCCcc-CchhhcCCCCCCEEeccCCCCC
Q 017648 120 ----LEELEVLDFGHNNFSG-PLPNDLGINHSLTILLLDNNDFVGS-LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 120 ----l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
+++|++|+|++|.+++ .++..+..+++|+.|+|++|.|++. ++..+..+++|++|++++|+++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4445555555555543 2233334455555555555555433 2223334555555555555554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=1.4e-06 Score=81.71 Aligned_cols=100 Identities=11% Similarity=-0.010 Sum_probs=45.9
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCC-EEEccCCcCCCCCCcccCCCCCCCEEEc
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELE-VLDFGHNNFSGPLPNDLGINHSLTILLL 152 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~-~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 152 (368)
+++.|+|++|+++..-...|.++.+|+.|+|.+| +...-...|.++.+|+ .|++.+ +++..-+..|.++.+|+.|++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 4455555555554222233555555555555554 3322234455555555 555554 333222234445555555555
Q ss_pred cCCcCCccCchhhcCCCCCCEEe
Q 017648 153 DNNDFVGSLSPEIYKLQVLSESQ 175 (368)
Q Consensus 153 s~N~l~g~iP~~l~~l~~L~~L~ 175 (368)
++|+++..-...|.++.+|+.++
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCccCccchhhhcCCcchhhhc
Confidence 55555422223444455555444
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.23 E-value=7.2e-07 Score=90.05 Aligned_cols=23 Identities=4% Similarity=-0.135 Sum_probs=13.2
Q ss_pred cCchhhcCCCCCCEEeccCCCCC
Q 017648 160 SLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 160 ~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
.+|..+..+++|++|+|++|.++
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCC
T ss_pred HHHHHHhhcCCCcEEecCCCcCC
Confidence 44555555566666666666654
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.09 E-value=2.6e-07 Score=93.26 Aligned_cols=110 Identities=7% Similarity=0.014 Sum_probs=74.1
Q ss_pred CcEEEEEecCCCCcccCchhhc-CCCCCCEEEee--c----CCCCcC-----CccccCCCCCCCEEEccCCcCCCCCCcc
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILR--N----NSFSGI-----IPEGFGELEELEVLDFGHNNFSGPLPND 140 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls--~----N~l~g~-----~P~~~~~l~~L~~L~Ls~N~l~g~lP~~ 140 (368)
.+++.|++..|++++.....+. .+++|++|+|+ + |.+++. ++..+..+++|+.|+|++ .+++.....
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 4678888888888876555554 57888888888 3 455521 122255677888888866 555444444
Q ss_pred cCC-CCCCCEEEccCCcCCccCchhh-cCCCCCCEEeccCCCCCc
Q 017648 141 LGI-NHSLTILLLDNNDFVGSLSPEI-YKLQVLSESQVDEGQLSS 183 (368)
Q Consensus 141 l~~-l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~L~~N~l~g 183 (368)
++. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|.+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 444 6778888888888765544444 567888888888888754
No 146
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.07 E-value=7.1e-06 Score=66.53 Aligned_cols=94 Identities=20% Similarity=0.310 Sum_probs=65.6
Q ss_pred CEEEccCCcCC-CCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCCCEEeccCCCCCccCCCCccccccccc-ccCc
Q 017648 124 EVLDFGHNNFS-GPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLSSAAKKEQSCYERSIK-WNGV 201 (368)
Q Consensus 124 ~~L~Ls~N~l~-g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ip~~~~~~~~~~~-~~~~ 201 (368)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+..-+..|..+.+|+.|+|++|.|. ++|....+. |...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~------CdC~l~~l~~wl~~ 82 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR------CDCRLVPLRAWLAG 82 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB------CSGGGHHHHHHHHT
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee------ccCccHHHHHHHHh
Confidence 35677777775 34665442 46888999999988444445778899999999999775 899887766 4322
Q ss_pred CChhHHHhhccCccccccccCCcCC
Q 017648 202 LDEDTVQRRLLQINPFRNLKGRILG 226 (368)
Q Consensus 202 ~~~~~~~~~~~~c~~~~~~~g~~l~ 226 (368)
.... .....+.|..+..++|..+.
T Consensus 83 ~~~~-~~~~~~~C~~P~~l~g~~l~ 106 (130)
T 3rfe_A 83 RPER-APYRDLRCVAPPALRGRLLP 106 (130)
T ss_dssp SSCS-GGGTTCBCCBSTTTTTCBGG
T ss_pred Cccc-ccccCcEeCcChHHcCCCcc
Confidence 2111 12456789999999998875
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.06 E-value=1.1e-06 Score=88.76 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=78.5
Q ss_pred CcEEEEEecCCCCcccCchhhc-CCCCCCEEEeecC-CCCcC-CccccCCCCCCCEEEccCCcCCCCCCcccC----CCC
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQ-SLTHIKSIILRNN-SFSGI-IPEGFGELEELEVLDFGHNNFSGPLPNDLG----INH 145 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N-~l~g~-~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~----~l~ 145 (368)
.+++.|+|++|.+++.....+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5789999999998877766665 6899999999998 55432 444455788999999999998765544433 567
Q ss_pred CCCEEEccCCc--CCc-cCchhhcCCCCCCEEeccCC
Q 017648 146 SLTILLLDNND--FVG-SLSPEIYKLQVLSESQVDEG 179 (368)
Q Consensus 146 ~L~~L~Ls~N~--l~g-~iP~~l~~l~~L~~L~L~~N 179 (368)
+|+.|+|++|. +.. .+...+.++++|++|++++|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 89999999886 221 12222345788999999888
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=1.9e-06 Score=74.14 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=75.4
Q ss_pred cCchhhcCCCCCCEEEeecC-CCCcC----CccccCCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEEccCCcCC
Q 017648 88 TLAPEIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFV 158 (368)
Q Consensus 88 ~~p~~l~~L~~L~~L~Ls~N-~l~g~----~P~~~~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~Ls~N~l~ 158 (368)
.+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+.....|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 44556778899999999999 88742 445667789999999999999742 2334555678999999999998
Q ss_pred cc----CchhhcCCCCCCEEec--cCCCCCc
Q 017648 159 GS----LSPEIYKLQVLSESQV--DEGQLSS 183 (368)
Q Consensus 159 g~----iP~~l~~l~~L~~L~L--~~N~l~g 183 (368)
.. +...+....+|++|+| ++|.+..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 43 4556777889999999 8899874
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=2.4e-06 Score=81.55 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=63.8
Q ss_pred CcEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccC--CCCCCCEEEccC--CcCCCC-----CCccc--
Q 017648 73 GKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFG--ELEELEVLDFGH--NNFSGP-----LPNDL-- 141 (368)
Q Consensus 73 ~~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~--~l~~L~~L~Ls~--N~l~g~-----lP~~l-- 141 (368)
.+++.|+|++|.- -.++. + .+.+|+.|+|..+.+....-..+. .+++|+.|+|+. |...|. +-..+
T Consensus 172 P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 4788888887631 12333 3 367788888877776543323332 577788887753 222111 11112
Q ss_pred CCCCCCCEEEccCCcCCccCchhhc---CCCCCCEEeccCCCCCc
Q 017648 142 GINHSLTILLLDNNDFVGSLSPEIY---KLQVLSESQVDEGQLSS 183 (368)
Q Consensus 142 ~~l~~L~~L~Ls~N~l~g~iP~~l~---~l~~L~~L~L~~N~l~g 183 (368)
..+++|++|+|.+|.+.+.....+. .+++|++|+|+.|.+.+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2467788888887777654433333 46678888888887765
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=1.2e-05 Score=75.32 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=72.7
Q ss_pred CCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCC-EEEccCCcCCccCchhhcCCCCCCE
Q 017648 95 SLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT-ILLLDNNDFVGSLSPEIYKLQVLSE 173 (368)
Q Consensus 95 ~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~-~L~Ls~N~l~g~iP~~l~~l~~L~~ 173 (368)
.+.+|+.|+|++|+++..-...|.++.+|+.|+|.+| +...-...|.++.+|+ .++|.+ +++..-+..|.++.+|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3789999999999999554567999999999999998 7644445688999999 999988 677444567889999999
Q ss_pred EeccCCCCCc
Q 017648 174 SQVDEGQLSS 183 (368)
Q Consensus 174 L~L~~N~l~g 183 (368)
+++.+|.++.
T Consensus 302 l~l~~n~i~~ 311 (329)
T 3sb4_A 302 VLATGDKITT 311 (329)
T ss_dssp EEECSSCCCE
T ss_pred EEeCCCccCc
Confidence 9999998874
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.50 E-value=6.2e-05 Score=71.76 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=51.1
Q ss_pred cEEEEEecCCCCcccCchhhc--CCCCCCEEEeec--CCCCcC-----Ccccc--CCCCCCCEEEccCCcCCCCCCccc-
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQ--SLTHIKSIILRN--NSFSGI-----IPEGF--GELEELEVLDFGHNNFSGPLPNDL- 141 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~--~L~~L~~L~Ls~--N~l~g~-----~P~~~--~~l~~L~~L~Ls~N~l~g~lP~~l- 141 (368)
+++.|+|..+.+....-..+. .+++|++|+|+. |...|. +-..+ ..+++|++|+|.+|.+.+.....+
T Consensus 194 ~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 456666665555433222232 456666666542 111111 11111 135566666666665543222122
Q ss_pred --CCCCCCCEEEccCCcCCcc----CchhhcCCCCCCEEeccCCCCC
Q 017648 142 --GINHSLTILLLDNNDFVGS----LSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 142 --~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
..+++|+.|+|+.|.+.+. +...+.++++|+.|+|++|.++
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1345666666666665532 2333344556666666666554
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=4.9e-05 Score=64.73 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=17.4
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecC
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNN 107 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N 107 (368)
+++.|||+++.|+..=-..+..+++|++|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4566666665554322223445555555555554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.39 E-value=5.7e-05 Score=64.34 Aligned_cols=84 Identities=10% Similarity=0.004 Sum_probs=63.8
Q ss_pred CCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCc-CCCCCCcccCCC----CCCCEEEccCCc-CCccCchhhcCCCC
Q 017648 97 THIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN-FSGPLPNDLGIN----HSLTILLLDNND-FVGSLSPEIYKLQV 170 (368)
Q Consensus 97 ~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~-l~g~lP~~l~~l----~~L~~L~Ls~N~-l~g~iP~~l~~l~~ 170 (368)
-.|++|||+++.++..--..+..+++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++..==..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999876545667899999999999985 654322334544 379999999974 66322235678999
Q ss_pred CCEEeccCCC
Q 017648 171 LSESQVDEGQ 180 (368)
Q Consensus 171 L~~L~L~~N~ 180 (368)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.28 E-value=0.00068 Score=65.40 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=61.7
Q ss_pred cEEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCC-----cCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 017648 74 KVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFS-----GIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLT 148 (368)
Q Consensus 74 ~v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-----g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 148 (368)
.++.|.|. ++++..-...|.++.+|+.+++.+|.+. ..-...|.++.+|+.++|.+ ++...-...|.++.+|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 34555552 3344222345677777777777776654 12235567777777777773 35522234566677777
Q ss_pred EEEccCCcCCccCchhhcCCCCCCEEeccCCCCC
Q 017648 149 ILLLDNNDFVGSLSPEIYKLQVLSESQVDEGQLS 182 (368)
Q Consensus 149 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 182 (368)
.++|..| ++..-...|.++ +|+.+++.+|.+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 7777544 542223456666 7777777777654
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0011 Score=53.48 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEEecCCCCc-ccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcC
Q 017648 77 NLNLKDLCLE-GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNF 133 (368)
Q Consensus 77 ~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 133 (368)
.++.++++|+ ..+|..|. .+|++|+|++|+|+..-+..|..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3455555554 23443222 2445555555555432223334444444444444433
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.81 E-value=0.0029 Score=60.88 Aligned_cols=106 Identities=6% Similarity=0.006 Sum_probs=80.3
Q ss_pred CcEEEEEecCCCCc-----ccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 017648 73 GKVVNLNLKDLCLE-----GTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSL 147 (368)
Q Consensus 73 ~~v~~L~L~~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 147 (368)
.+++.|+|.+|.+. ..-...|.++.+|+.++|. |.+.-.-...|.++.+|+.++|.+| ++..-...|.++ +|
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 47899999888765 2234568999999999999 4576444578999999999999765 653344568888 99
Q ss_pred CEEEccCCcCCccCchhhcCCC-CCCEEeccCCCC
Q 017648 148 TILLLDNNDFVGSLSPEIYKLQ-VLSESQVDEGQL 181 (368)
Q Consensus 148 ~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~L~~N~l 181 (368)
+.+++.+|.+.......|..+. +++.|++..|.+
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 9999999988744445566664 788888877654
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.73 E-value=0.00044 Score=59.90 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCcEEEEEecCC-CCcc----cCchhhcCCCCCCEEEeecCCCCcC----CccccCCCCCCCEEEccCCcCCCC----CC
Q 017648 72 DGKVVNLNLKDL-CLEG----TLAPEIQSLTHIKSIILRNNSFSGI----IPEGFGELEELEVLDFGHNNFSGP----LP 138 (368)
Q Consensus 72 ~~~v~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~g~----lP 138 (368)
+..++.|+|++| .|.. .+-..+..=+.|+.|+|++|.+... +...+..-+.|++|+|++|.|... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457899999985 7652 2444566668899999999999743 233344557899999999999742 22
Q ss_pred cccCCCCCCCEEEccCCc---CCc----cCchhhcCCCCCCEEeccCCCC
Q 017648 139 NDLGINHSLTILLLDNND---FVG----SLSPEIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 139 ~~l~~l~~L~~L~Ls~N~---l~g----~iP~~l~~l~~L~~L~L~~N~l 181 (368)
..+..-..|+.|+|++|. +.. .+-..+..-+.|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 234445679999998653 332 2334556667899999987654
No 158
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.31 E-value=0.00053 Score=43.73 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=14.3
Q ss_pred ceEEEeehhHHHHHHHHHHh
Q 017648 309 HIAILGGVIGGAILLVATVG 328 (368)
Q Consensus 309 ~~~i~~~vi~~~~~~~~~~~ 328 (368)
..+|+++|++|+++++++++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~ 28 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGL 28 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEeehHHHHHHHHHHH
Confidence 35789999998877774333
No 159
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=96.21 E-value=0.00075 Score=43.14 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=13.6
Q ss_pred eEEEeehhHHHHHHHHHHh
Q 017648 310 IAILGGVIGGAILLVATVG 328 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~~~~~ 328 (368)
.+|+++|++|+++++++++
T Consensus 11 ~~IA~gVVgGv~~~~ii~~ 29 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVAL 29 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHH
T ss_pred ceEEeehhHHHHHHHHHHH
Confidence 4788999988777763333
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.83 E-value=0.0047 Score=53.41 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=65.2
Q ss_pred CchhhcCCCCCCEEEeecC-CCCcC----CccccCCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEEccCCcCCc
Q 017648 89 LAPEIQSLTHIKSIILRNN-SFSGI----IPEGFGELEELEVLDFGHNNFSGP----LPNDLGINHSLTILLLDNNDFVG 159 (368)
Q Consensus 89 ~p~~l~~L~~L~~L~Ls~N-~l~g~----~P~~~~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~Ls~N~l~g 159 (368)
+..-+.+-..|++|+|++| .+... +-+.+..-+.|+.|+|++|.+... |-..+..-+.|+.|+|++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3334555678999999986 77532 345566778899999999999732 22233345789999999999974
Q ss_pred c----CchhhcCCCCCCEEeccCC
Q 017648 160 S----LSPEIYKLQVLSESQVDEG 179 (368)
Q Consensus 160 ~----iP~~l~~l~~L~~L~L~~N 179 (368)
. +-..+..-..|++|+|++|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 2 2334555578999999875
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.18 E-value=0.09 Score=49.90 Aligned_cols=83 Identities=8% Similarity=0.143 Sum_probs=37.0
Q ss_pred hcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCc-hhhcCCCCC
Q 017648 93 IQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS-PEIYKLQVL 171 (368)
Q Consensus 93 l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L 171 (368)
|.++..|+.+++. +.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++ .|. ..|.++.+|
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCC
Confidence 3444445554443 2232112234555555555555443 22111223455555555555433 33 232 234555555
Q ss_pred CEEeccCC
Q 017648 172 SESQVDEG 179 (368)
Q Consensus 172 ~~L~L~~N 179 (368)
+.+++.+|
T Consensus 360 ~~i~~~~~ 367 (394)
T 4gt6_A 360 NNIEYSGS 367 (394)
T ss_dssp CEEEESSC
T ss_pred CEEEECCc
Confidence 55555554
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.03 E-value=0.067 Score=50.34 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=38.1
Q ss_pred hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCchhhcCCCCC
Q 017648 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVL 171 (368)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L 171 (368)
.+.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|.++.+|+.+++.++.++..-...|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3455555666555443 32222234445555555555433 221111234455555555555555441112234455555
Q ss_pred CEEecc
Q 017648 172 SESQVD 177 (368)
Q Consensus 172 ~~L~L~ 177 (368)
+.+.|.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 555554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.92 E-value=0.047 Score=51.87 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=63.3
Q ss_pred EEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCC-cccCCCCCCCEEEcc
Q 017648 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLP-NDLGINHSLTILLLD 153 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L~~L~Ls 153 (368)
++.+.+. +.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++ .|. ..|.++.+|+.+++.
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEES
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEEC
Confidence 4444443 2344222345888999999999865 55333567999999999999765 55 344 468899999999999
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCCC
Q 017648 154 NNDFVGSLSPEIYKLQVLSESQVDEGQL 181 (368)
Q Consensus 154 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l 181 (368)
+|.... ..+....+|+.+.+..|.+
T Consensus 366 ~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 366 GSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp SCHHHH---HTCBCCCCC----------
T ss_pred Cceeeh---hhhhccCCCCEEEeCCCCE
Confidence 886431 3566778899888877654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.10 E-value=0.064 Score=50.97 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=63.7
Q ss_pred hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCc-hhhcCCCC
Q 017648 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS-PEIYKLQV 170 (368)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~ 170 (368)
.+..+.+|+.+.+.++ +...-...|.++.+|+.++|.++ ++..-...|.++.+|+.++|..| ++ .|. ..|.++.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 4778899999999765 55333467889999999999765 55222456888999999999876 65 443 46788999
Q ss_pred CCEEeccCC
Q 017648 171 LSESQVDEG 179 (368)
Q Consensus 171 L~~L~L~~N 179 (368)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 999998765
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.72 E-value=0.11 Score=49.30 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=68.1
Q ss_pred EEEEEecCCCCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 75 VVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 75 v~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
++.+.+..+... .-...+..+..|+.+.+..+.+. ...|..+.+|+.+.+.++ +...-...|.++.+|+.++|.+
T Consensus 255 l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 255 LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred ceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 444555444322 22345777888998888766543 245778999999999876 5422334588899999999975
Q ss_pred CcCCccCc-hhhcCCCCCCEEeccCC
Q 017648 155 NDFVGSLS-PEIYKLQVLSESQVDEG 179 (368)
Q Consensus 155 N~l~g~iP-~~l~~l~~L~~L~L~~N 179 (368)
+ ++ .|. ..|.++.+|+.+++..|
T Consensus 330 ~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 330 L-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp T-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred c-cc-EEhHHhccCCCCCCEEEECcc
Confidence 4 65 443 46788999999999776
No 166
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=93.05 E-value=0.018 Score=36.16 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=14.8
Q ss_pred eEEEeehhHHHHHHH-HHHh-hheeeec
Q 017648 310 IAILGGVIGGAILLV-ATVG-IYLCRCN 335 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~-~~~~-~~~~r~r 335 (368)
.+|++++++|+++++ ++++ +++||||
T Consensus 13 ~~I~~~vv~Gv~ll~~iv~~~~~~~rRr 40 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLLVLAGVGFFIHRRR 40 (41)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred EEEEeehhHHHHHHHHHHHHheeEeeec
Confidence 467777777776655 3333 4444443
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=92.92 E-value=0.0078 Score=38.26 Aligned_cols=14 Identities=36% Similarity=0.774 Sum_probs=8.1
Q ss_pred eEEEeehhHHHHHHH
Q 017648 310 IAILGGVIGGAILLV 324 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~ 324 (368)
..|+++|+| +++++
T Consensus 12 ~~Ia~~vVG-vll~v 25 (44)
T 2jwa_A 12 TSIISAVVG-ILLVV 25 (44)
T ss_dssp HHHHHHHHH-HHHHH
T ss_pred cchHHHHHH-HHHHH
Confidence 356777766 44444
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.69 E-value=0.45 Score=44.56 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=40.7
Q ss_pred hhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCcCCccCc-hhhcCCCC
Q 017648 92 EIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLS-PEIYKLQV 170 (368)
Q Consensus 92 ~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~ 170 (368)
.+.++.+|+.+++..+ +...-...|.++.+|+.+++.++.++..-...|.++.+|+.++|..+ ++ .|. ..|.++.+
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 334 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKA 334 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCC
Confidence 3455555666655433 32122234555666666666655554222234555566666666433 33 222 23455555
Q ss_pred CCEEecc
Q 017648 171 LSESQVD 177 (368)
Q Consensus 171 L~~L~L~ 177 (368)
|+.+.+.
T Consensus 335 L~~i~ip 341 (379)
T 4h09_A 335 LSTISYP 341 (379)
T ss_dssp CCCCCCC
T ss_pred CCEEEEC
Confidence 6555553
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=91.45 E-value=0.031 Score=34.49 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=5.6
Q ss_pred eEEEeehhHHHH
Q 017648 310 IAILGGVIGGAI 321 (368)
Q Consensus 310 ~~i~~~vi~~~~ 321 (368)
.+|+++|++.++
T Consensus 11 GaIAGiVvG~v~ 22 (38)
T 2k1k_A 11 GEIVAVIFGLLL 22 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred CceeeeehHHHH
Confidence 355555444443
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=81.80 E-value=0.095 Score=31.46 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=7.9
Q ss_pred eEEEeehhHHHHHHH
Q 017648 310 IAILGGVIGGAILLV 324 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~ 324 (368)
..|+++|+| +++++
T Consensus 8 ~sIaagVvg-lll~v 21 (35)
T 1iij_A 8 TFIIATVVG-VLLFL 21 (35)
T ss_dssp HHHHHHHHH-HHHHH
T ss_pred cEeHHHHHH-HHHHH
Confidence 346667766 44444
No 171
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=61.93 E-value=1.4 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=13.2
Q ss_pred EEEeehhHHHHHHHHHHh-h--heeeecCCc
Q 017648 311 AILGGVIGGAILLVATVG-I--YLCRCNKVS 338 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~-~--~~~r~rk~~ 338 (368)
.|+++|++|.+++.++++ . +.++||+++
T Consensus 11 iIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 345555566555553333 2 234555443
No 172
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=60.55 E-value=2 Score=28.42 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=13.2
Q ss_pred EEEeehhHHHHHHHHHHh-h--heeeecCCc
Q 017648 311 AILGGVIGGAILLVATVG-I--YLCRCNKVS 338 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~-~--~~~r~rk~~ 338 (368)
.|+++|++|.+++.++++ . +.++||+++
T Consensus 14 iIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 14 WVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 344555566555553333 2 234555543
No 173
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=57.59 E-value=6.3 Score=26.98 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=5.6
Q ss_pred ehhHHHHHHH
Q 017648 315 GVIGGAILLV 324 (368)
Q Consensus 315 ~vi~~~~~~~ 324 (368)
+|+||++.++
T Consensus 12 ivlGg~~~ll 21 (70)
T 2klu_A 12 IVLGGVAGLL 21 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhHHHHHH
Confidence 4556655555
No 174
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=57.53 E-value=1.9 Score=27.25 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=14.1
Q ss_pred EEEeehhHHHHHHHHHHhhheeeecCC
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCNKV 337 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~rk~ 337 (368)
.+++|+++. +++++++.+|+.||+.+
T Consensus 16 gVVgGv~~~-~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 16 GMVGALLLL-LVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHTTTCC
T ss_pred ehhHHHHHH-HHHHHHHHHHhhhhHhh
Confidence 455555444 44455666666655544
No 175
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=56.74 E-value=1.4 Score=25.98 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=11.1
Q ss_pred EEEeehhHHHHHHH-HHHhhheeee
Q 017648 311 AILGGVIGGAILLV-ATVGIYLCRC 334 (368)
Q Consensus 311 ~i~~~vi~~~~~~~-~~~~~~~~r~ 334 (368)
+++++|++-++..+ +++++|+++|
T Consensus 8 aIaGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eEEeEeHHHHHHHHHHHHHHhheec
Confidence 34444444444444 3344666554
No 176
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.00 E-value=2.3 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=10.9
Q ss_pred EEeehhHHHHHHHHHHhhheeeecC
Q 017648 312 ILGGVIGGAILLVATVGIYLCRCNK 336 (368)
Q Consensus 312 i~~~vi~~~~~~~~~~~~~~~r~rk 336 (368)
+++|+++. +++++++.+|+.|||+
T Consensus 16 VVgGv~~v-~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 16 VIGGLFIL-VIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTTCS
T ss_pred ehHHHHHH-HHHHHHHHHHhhhhhh
Confidence 34444443 3444444555544443
No 177
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=55.91 E-value=2.5 Score=26.43 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=7.9
Q ss_pred EEEeehhHHHHHHHHH
Q 017648 311 AILGGVIGGAILLVAT 326 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~ 326 (368)
.|++++++|.+++.++
T Consensus 12 iIi~s~l~GLllL~li 27 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTIL 27 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555533
No 178
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=55.66 E-value=2.4 Score=38.86 Aligned_cols=10 Identities=20% Similarity=-0.267 Sum_probs=0.0
Q ss_pred EEEeehhHHH
Q 017648 311 AILGGVIGGA 320 (368)
Q Consensus 311 ~i~~~vi~~~ 320 (368)
.|++||++++
T Consensus 285 ~i~~~vi~~l 294 (315)
T 1cd1_A 285 LIVFIVLIML 294 (315)
T ss_dssp ----------
T ss_pred eeehhHHHHH
Confidence 4544555443
No 179
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=59.07 E-value=2.7 Score=25.58 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=10.3
Q ss_pred EEEeehhHHHHHHH--HHHhhheeeec
Q 017648 311 AILGGVIGGAILLV--ATVGIYLCRCN 335 (368)
Q Consensus 311 ~i~~~vi~~~~~~~--~~~~~~~~r~r 335 (368)
.+++++.+.++.++ +++.++.|+++
T Consensus 9 ~vl~avlal~vi~iisLIiLi~~w~qK 35 (39)
T 2l6w_A 9 VVISAILALVVLTIISLIILIMLWQKK 35 (39)
Confidence 34444433333333 33335555544
No 180
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=58.97 E-value=2.7 Score=26.17 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=12.5
Q ss_pred EEEeehhHHHHHHHHHHh-hheeeec
Q 017648 311 AILGGVIGGAILLVATVG-IYLCRCN 335 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~-~~~~r~r 335 (368)
++++..++|++++.++++ +++.|||
T Consensus 18 a~iGL~v~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 18 AIIGLMVGGVVIATVIVITLVMLKKK 43 (43)
Confidence 445444455555555544 5555543
No 181
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=46.30 E-value=4.2 Score=42.89 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred EeehhHHHHHHH-HHHhhheeeec
Q 017648 313 LGGVIGGAILLV-ATVGIYLCRCN 335 (368)
Q Consensus 313 ~~~vi~~~~~~~-~~~~~~~~r~r 335 (368)
+++|++|+++++ ++++++++|||
T Consensus 707 ii~il~~~~~ll~~~ll~~~~~~~ 730 (880)
T 1q55_A 707 ILVILGSVLALLILFLLLLLFLKR 730 (880)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444445544444 33334444433
No 182
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.58 E-value=1.9 Score=31.02 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=8.6
Q ss_pred eEEEeehhHHHHHHH
Q 017648 310 IAILGGVIGGAILLV 324 (368)
Q Consensus 310 ~~i~~~vi~~~~~~~ 324 (368)
.+|++||++|++++.
T Consensus 11 ~~Iv~gvi~gilliG 25 (79)
T 2knc_B 11 LVVLLSVMGAILLIG 25 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 356666666654444
No 183
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=40.05 E-value=7.8 Score=22.83 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=10.1
Q ss_pred ehhHHHHHHHHHHh--hheeeecC
Q 017648 315 GVIGGAILLVATVG--IYLCRCNK 336 (368)
Q Consensus 315 ~vi~~~~~~~~~~~--~~~~r~rk 336 (368)
.+++|.++++.++. ++.||-||
T Consensus 11 t~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEEcccc
Confidence 34455555554444 44444443
No 184
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=38.01 E-value=5 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=8.6
Q ss_pred EeehhHHHHHHHHHHhhheeeec
Q 017648 313 LGGVIGGAILLVATVGIYLCRCN 335 (368)
Q Consensus 313 ~~~vi~~~~~~~~~~~~~~~r~r 335 (368)
+.+|++|++-.++++..+.+|-+
T Consensus 16 I~~vmaGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 16 IFGVMAGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444443333333333333333
No 185
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=33.45 E-value=20 Score=25.68 Aligned_cols=26 Identities=42% Similarity=0.349 Sum_probs=16.0
Q ss_pred EEEeehhHHHHHHHHHHhhheeeecC
Q 017648 311 AILGGVIGGAILLVATVGIYLCRCNK 336 (368)
Q Consensus 311 ~i~~~vi~~~~~~~~~~~~~~~r~rk 336 (368)
+|+-|+-.|+.++++++.+++.||||
T Consensus 22 ~I~~G~~iGAs~llliil~lltkkrr 47 (80)
T 2k9p_A 22 AILFGVRSGAAALTLIVVWITSRSRK 47 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45556666666666666667776443
No 186
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=28.90 E-value=17 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=9.7
Q ss_pred EEeehhHHHHHHHHHHh-hheeeecC
Q 017648 312 ILGGVIGGAILLVATVG-IYLCRCNK 336 (368)
Q Consensus 312 i~~~vi~~~~~~~~~~~-~~~~r~rk 336 (368)
+++..++++++++++++ +++.|||+
T Consensus 32 ~igL~v~~vai~~viVv~l~v~rrr~ 57 (122)
T 2lp1_A 32 IIGLMVGGVVIATVIVITLVMLKKKQ 57 (122)
Confidence 33333344333333333 44444443
No 187
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.77 E-value=1.5e+02 Score=21.66 Aligned_cols=39 Identities=13% Similarity=-0.018 Sum_probs=19.0
Q ss_pred cccCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 017648 115 EGFGELEELEVLDFGHNNFSGPLPNDLGINHSLTILLLDN 154 (368)
Q Consensus 115 ~~~~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~Ls~ 154 (368)
..|.++++|+.+.|..+--. .--..|.++.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 34555555666555543211 1123455556666555543
No 188
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.20 E-value=1.6e+02 Score=21.51 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=32.8
Q ss_pred CCcccCchhhcCCCCCCEEEeecCCCCcCCccccCCCCCCCEEEccCCc
Q 017648 84 CLEGTLAPEIQSLTHIKSIILRNNSFSGIIPEGFGELEELEVLDFGHNN 132 (368)
Q Consensus 84 ~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~ 132 (368)
+++..-...|.++.+|+.+.|-.+ ++..--..|.++.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 344323345888899999988765 332334678899999999887653
Done!