Query 017649
Match_columns 368
No_of_seqs 233 out of 2258
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 10:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.9 5.4E-20 1.2E-24 184.5 23.9 285 63-361 169-473 (482)
2 KOG1840 Kinesin light chain [C 99.5 9E-13 2E-17 131.0 15.9 134 222-355 201-334 (508)
3 KOG1840 Kinesin light chain [C 99.5 1.5E-12 3.3E-17 129.3 15.6 132 226-357 247-378 (508)
4 PF00856 SET: SET domain; Int 99.4 1.6E-12 3.5E-17 110.1 9.1 61 75-135 98-162 (162)
5 PF13424 TPR_12: Tetratricopep 99.2 3.2E-11 7E-16 90.3 7.6 77 258-335 1-77 (78)
6 smart00317 SET SET (Su(var)3-9 99.1 8.2E-11 1.8E-15 94.5 3.8 45 90-134 68-116 (116)
7 KOG2589 Histone tail methylase 98.9 1.8E-09 4E-14 100.0 4.9 82 73-165 174-257 (453)
8 CHL00033 ycf3 photosystem I as 98.7 2.2E-07 4.8E-12 80.1 12.4 127 220-352 35-161 (168)
9 TIGR02795 tol_pal_ybgF tol-pal 98.6 8.8E-07 1.9E-11 70.8 11.5 114 222-350 4-117 (119)
10 PF13424 TPR_12: Tetratricopep 98.4 1.5E-06 3.3E-11 64.7 8.7 73 221-294 6-78 (78)
11 PRK15359 type III secretion sy 98.4 1.6E-05 3.6E-10 66.8 15.1 114 222-356 26-139 (144)
12 PRK15363 pathogenicity island 98.4 3.2E-05 6.9E-10 65.3 15.7 119 218-357 33-151 (157)
13 KOG0553 TPR repeat-containing 98.3 1E-05 2.2E-10 74.4 13.3 122 218-363 79-200 (304)
14 KOG1839 Uncharacterized protei 98.3 2.7E-06 5.9E-11 91.0 10.0 128 227-355 939-1066(1236)
15 PF13374 TPR_10: Tetratricopep 98.3 1E-06 2.2E-11 57.1 3.9 42 303-344 1-42 (42)
16 PRK02603 photosystem I assembl 98.3 1.2E-05 2.6E-10 69.6 11.4 129 220-354 35-163 (172)
17 PF13374 TPR_10: Tetratricopep 98.2 1.9E-06 4.2E-11 55.8 4.3 42 261-302 1-42 (42)
18 PRK10803 tol-pal system protei 98.2 3E-05 6.4E-10 71.8 13.4 114 224-352 146-260 (263)
19 PLN03088 SGT1, suppressor of 98.2 3.3E-05 7.2E-10 74.9 14.1 109 223-352 5-113 (356)
20 TIGR02552 LcrH_SycD type III s 98.1 8.7E-05 1.9E-09 61.0 13.8 109 223-352 20-128 (135)
21 PF09986 DUF2225: Uncharacteri 98.1 6E-05 1.3E-09 67.6 12.7 138 197-336 47-197 (214)
22 KOG4442 Clathrin coat binding 98.1 3.3E-06 7.1E-11 84.9 4.5 54 87-140 184-242 (729)
23 KOG4626 O-linked N-acetylgluco 98.0 2.6E-05 5.7E-10 77.8 10.1 96 222-333 322-417 (966)
24 COG2940 Proteins containing SE 98.0 3E-06 6.6E-11 85.3 2.9 70 94-163 404-477 (480)
25 TIGR03302 OM_YfiO outer membra 98.0 8.9E-05 1.9E-09 67.2 12.3 114 221-349 34-155 (235)
26 PRK10866 outer membrane biogen 98.0 0.00023 4.9E-09 65.3 14.8 127 222-360 34-175 (243)
27 PF13512 TPR_18: Tetratricopep 97.9 0.00016 3.5E-09 60.0 11.5 88 222-319 12-99 (142)
28 PF13525 YfiO: Outer membrane 97.9 0.00056 1.2E-08 60.9 16.0 126 220-360 5-141 (203)
29 PF12895 Apc3: Anaphase-promot 97.9 8.3E-05 1.8E-09 56.2 8.6 83 233-330 2-84 (84)
30 KOG4626 O-linked N-acetylgluco 97.9 0.00013 2.8E-09 73.0 11.2 114 219-356 353-466 (966)
31 PF09976 TPR_21: Tetratricopep 97.8 0.00026 5.7E-09 59.4 11.4 95 223-331 51-145 (145)
32 PF13414 TPR_11: TPR repeat; P 97.8 0.00014 3.1E-09 52.4 7.7 63 263-333 4-67 (69)
33 KOG1080 Histone H3 (Lys4) meth 97.8 1.9E-05 4E-10 84.3 3.9 42 96-137 940-985 (1005)
34 TIGR02521 type_IV_pilW type IV 97.7 0.00078 1.7E-08 59.4 13.3 92 225-332 36-127 (234)
35 PF14938 SNAP: Soluble NSF att 97.7 0.0012 2.7E-08 61.8 15.0 125 227-358 42-167 (282)
36 COG3063 PilF Tfp pilus assembl 97.7 0.00042 9E-09 61.7 10.8 96 221-332 36-131 (250)
37 PF12688 TPR_5: Tetratrico pep 97.7 0.00079 1.7E-08 54.7 11.5 100 223-332 4-103 (120)
38 cd00189 TPR Tetratricopeptide 97.6 0.00061 1.3E-08 50.2 9.4 93 225-333 5-97 (100)
39 KOG0543 FKBP-type peptidyl-pro 97.6 0.002 4.4E-08 61.8 14.5 108 218-333 206-320 (397)
40 PF13432 TPR_16: Tetratricopep 97.6 0.00041 8.9E-09 49.4 7.3 59 267-333 2-60 (65)
41 PRK11189 lipoprotein NlpI; Pro 97.5 0.00095 2.1E-08 63.0 11.7 97 221-333 65-161 (296)
42 KOG1839 Uncharacterized protei 97.5 0.00091 2E-08 72.2 12.1 121 232-352 1027-1147(1236)
43 COG1729 Uncharacterized protei 97.5 0.0008 1.7E-08 61.5 10.0 100 223-332 144-243 (262)
44 TIGR02521 type_IV_pilW type IV 97.5 0.0031 6.6E-08 55.5 13.9 94 226-333 105-198 (234)
45 TIGR03302 OM_YfiO outer membra 97.5 0.0049 1.1E-07 55.7 15.1 121 223-358 73-215 (235)
46 PF09976 TPR_21: Tetratricopep 97.4 0.0085 1.8E-07 50.1 15.0 100 220-329 11-110 (145)
47 PF13371 TPR_9: Tetratricopept 97.4 0.00043 9.3E-09 50.5 5.9 72 268-352 1-72 (73)
48 TIGR00990 3a0801s09 mitochondr 97.4 0.0025 5.4E-08 66.4 13.3 92 225-332 370-461 (615)
49 PF14938 SNAP: Soluble NSF att 97.4 0.0025 5.4E-08 59.7 12.0 108 225-336 79-187 (282)
50 TIGR00990 3a0801s09 mitochondr 97.3 0.0029 6.3E-08 65.9 13.2 93 225-333 336-428 (615)
51 PF03704 BTAD: Bacterial trans 97.3 0.0069 1.5E-07 50.6 13.1 124 220-351 6-144 (146)
52 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00091 2E-08 65.5 8.6 72 257-333 70-141 (453)
53 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0021 4.6E-08 50.9 9.3 84 263-356 3-86 (119)
54 CHL00033 ycf3 photosystem I as 97.3 0.0017 3.6E-08 55.8 9.1 68 261-333 34-101 (168)
55 PRK10370 formate-dependent nit 97.2 0.0081 1.7E-07 53.3 13.3 112 224-356 77-191 (198)
56 PRK11788 tetratricopeptide rep 97.2 0.0075 1.6E-07 58.6 14.0 96 225-333 40-136 (389)
57 COG4105 ComL DNA uptake lipopr 97.2 0.013 2.9E-07 53.2 14.3 129 221-361 35-168 (254)
58 PRK11788 tetratricopeptide rep 97.2 0.0087 1.9E-07 58.2 14.0 94 227-332 114-208 (389)
59 PRK15331 chaperone protein Sic 97.2 0.011 2.4E-07 50.3 12.5 107 219-347 36-142 (165)
60 PRK02603 photosystem I assembl 97.2 0.0039 8.5E-08 53.8 10.2 71 258-333 31-101 (172)
61 PRK15179 Vi polysaccharide bio 97.2 0.0057 1.2E-07 64.2 13.1 96 221-332 87-182 (694)
62 PF13432 TPR_16: Tetratricopep 97.1 0.0017 3.6E-08 46.2 6.4 59 225-291 2-60 (65)
63 PRK15174 Vi polysaccharide exp 97.1 0.0097 2.1E-07 62.5 14.1 116 223-357 287-402 (656)
64 PRK09782 bacteriophage N4 rece 97.1 0.0087 1.9E-07 65.3 14.0 93 226-334 615-707 (987)
65 PRK15179 Vi polysaccharide bio 97.0 0.0054 1.2E-07 64.4 11.2 99 220-334 120-218 (694)
66 PF13414 TPR_11: TPR repeat; P 97.0 0.0061 1.3E-07 43.7 8.3 62 222-291 5-67 (69)
67 KOG4234 TPR repeat-containing 97.0 0.027 5.9E-07 49.4 13.4 106 217-333 92-197 (271)
68 TIGR02917 PEP_TPR_lipo putativ 97.0 0.0068 1.5E-07 64.6 12.0 103 223-333 25-154 (899)
69 KOG1082 Histone H3 (Lys9) meth 96.9 0.00058 1.3E-08 66.4 3.0 50 90-139 266-324 (364)
70 PF14559 TPR_19: Tetratricopep 96.9 0.0026 5.5E-08 45.6 5.6 66 273-351 2-67 (68)
71 PRK15174 Vi polysaccharide exp 96.8 0.015 3.3E-07 61.1 13.1 93 225-333 251-347 (656)
72 cd05804 StaR_like StaR_like; a 96.8 0.01 2.2E-07 57.0 10.7 95 226-332 120-214 (355)
73 COG2956 Predicted N-acetylgluc 96.8 0.036 7.8E-07 52.0 13.3 133 219-363 106-266 (389)
74 PRK04841 transcriptional regul 96.7 0.024 5.1E-07 61.7 14.0 109 227-337 498-606 (903)
75 COG3063 PilF Tfp pilus assembl 96.7 0.0092 2E-07 53.3 8.2 95 226-334 75-169 (250)
76 PRK12370 invasion protein regu 96.6 0.026 5.7E-07 58.1 12.9 91 226-332 344-434 (553)
77 KOG1173 Anaphase-promoting com 96.6 0.027 5.9E-07 56.2 12.0 107 230-350 424-530 (611)
78 PF12688 TPR_5: Tetratrico pep 96.6 0.026 5.6E-07 45.8 10.0 64 264-332 3-66 (120)
79 PRK12370 invasion protein regu 96.6 0.0089 1.9E-07 61.5 9.0 84 234-333 318-401 (553)
80 KOG1130 Predicted G-alpha GTPa 96.6 0.058 1.3E-06 52.2 13.3 129 230-364 245-373 (639)
81 PRK09782 bacteriophage N4 rece 96.5 0.031 6.8E-07 61.1 13.0 94 232-347 588-681 (987)
82 PF12968 DUF3856: Domain of Un 96.4 0.16 3.4E-06 40.9 12.7 113 226-340 15-136 (144)
83 PRK11447 cellulose synthase su 96.4 0.03 6.5E-07 62.8 12.0 98 223-333 306-414 (1157)
84 KOG1141 Predicted histone meth 96.4 0.0018 4E-08 66.5 2.2 56 96-159 1190-1253(1262)
85 KOG1083 Putative transcription 96.3 0.0028 6E-08 66.9 3.4 39 97-135 1252-1294(1306)
86 PF14559 TPR_19: Tetratricopep 96.3 0.011 2.4E-07 42.1 5.7 54 231-292 2-55 (68)
87 TIGR02917 PEP_TPR_lipo putativ 96.3 0.055 1.2E-06 57.6 13.1 28 263-290 771-798 (899)
88 KOG1130 Predicted G-alpha GTPa 96.2 0.018 3.9E-07 55.6 7.7 101 231-335 206-306 (639)
89 PRK10803 tol-pal system protei 96.2 0.042 9.1E-07 50.9 10.0 84 265-358 145-229 (263)
90 KOG0550 Molecular chaperone (D 96.2 0.079 1.7E-06 51.2 11.8 123 218-355 247-370 (486)
91 PRK10049 pgaA outer membrane p 96.1 0.094 2E-06 56.2 13.9 94 223-333 52-145 (765)
92 COG5010 TadD Flp pilus assembl 96.1 0.048 1E-06 49.6 9.7 91 226-332 106-196 (257)
93 PRK11447 cellulose synthase su 96.1 0.037 7.9E-07 62.1 10.7 56 226-289 609-664 (1157)
94 KOG1126 DNA-binding cell divis 96.0 0.0046 9.9E-08 62.5 2.9 62 263-332 490-551 (638)
95 PF13429 TPR_15: Tetratricopep 96.0 0.045 9.8E-07 50.9 9.5 102 224-346 150-251 (280)
96 PRK14574 hmsH outer membrane p 96.0 0.049 1.1E-06 58.4 10.7 94 223-332 37-130 (822)
97 KOG1125 TPR repeat-containing 96.0 0.02 4.3E-07 57.3 7.1 95 231-341 441-535 (579)
98 COG2956 Predicted N-acetylgluc 95.9 0.085 1.8E-06 49.6 10.6 96 223-333 183-278 (389)
99 KOG1337 N-methyltransferase [G 95.9 0.0095 2.1E-07 60.1 4.9 88 62-155 198-291 (472)
100 PRK04841 transcriptional regul 95.9 0.11 2.4E-06 56.5 13.5 110 225-337 536-645 (903)
101 KOG2376 Signal recognition par 95.9 0.19 4.1E-06 50.7 13.5 124 225-359 84-230 (652)
102 cd00189 TPR Tetratricopeptide 95.8 0.1 2.3E-06 37.7 9.2 62 265-334 3-64 (100)
103 KOG2002 TPR-containing nuclear 95.8 0.031 6.7E-07 59.0 8.0 92 227-332 653-744 (1018)
104 KOG0548 Molecular co-chaperone 95.7 0.12 2.6E-06 51.5 11.3 109 224-356 6-114 (539)
105 KOG0548 Molecular co-chaperone 95.7 0.23 4.9E-06 49.6 13.2 109 225-357 363-471 (539)
106 KOG1173 Anaphase-promoting com 95.6 0.046 9.9E-07 54.7 8.1 70 265-335 417-486 (611)
107 PF13176 TPR_7: Tetratricopept 95.6 0.018 3.9E-07 35.9 3.6 30 306-335 1-30 (36)
108 TIGR00540 hemY_coli hemY prote 95.6 0.079 1.7E-06 52.3 10.1 72 255-336 329-402 (409)
109 PRK10049 pgaA outer membrane p 95.6 0.17 3.6E-06 54.3 13.1 97 229-334 319-423 (765)
110 PRK11189 lipoprotein NlpI; Pro 95.6 0.19 4.1E-06 47.3 12.1 95 222-333 100-194 (296)
111 PF13429 TPR_15: Tetratricopep 95.5 0.044 9.5E-07 51.0 7.2 94 226-335 186-279 (280)
112 PF13525 YfiO: Outer membrane 95.5 0.85 1.8E-05 40.4 15.2 127 222-363 44-195 (203)
113 PRK15359 type III secretion sy 95.4 0.044 9.6E-07 45.8 6.4 66 267-345 29-94 (144)
114 KOG1085 Predicted methyltransf 95.4 0.0084 1.8E-07 54.7 2.0 45 96-140 334-382 (392)
115 TIGR02552 LcrH_SycD type III s 95.4 0.087 1.9E-06 42.9 8.0 63 263-333 18-80 (135)
116 PF13176 TPR_7: Tetratricopept 95.4 0.035 7.5E-07 34.6 4.2 30 264-293 1-30 (36)
117 PF00515 TPR_1: Tetratricopept 95.3 0.032 7E-07 33.9 3.9 30 305-334 2-31 (34)
118 PRK10370 formate-dependent nit 95.3 0.22 4.8E-06 44.0 10.8 96 233-349 52-150 (198)
119 PF07719 TPR_2: Tetratricopept 95.3 0.033 7.2E-07 33.7 3.9 30 305-334 2-31 (34)
120 KOG0547 Translocase of outer m 95.3 0.092 2E-06 51.8 8.7 101 227-336 469-569 (606)
121 KOG0547 Translocase of outer m 95.2 0.2 4.3E-06 49.6 10.6 119 217-352 112-231 (606)
122 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.085 1.8E-06 52.0 8.1 66 221-291 76-141 (453)
123 KOG4642 Chaperone-dependent E3 95.1 0.2 4.3E-06 45.2 9.7 96 226-337 16-111 (284)
124 KOG4648 Uncharacterized conser 95.1 0.37 7.9E-06 45.8 11.7 101 216-332 93-193 (536)
125 PF12862 Apc5: Anaphase-promot 95.0 0.19 4.1E-06 38.7 8.4 65 273-337 9-74 (94)
126 PF13371 TPR_9: Tetratricopept 95.0 0.19 4.2E-06 36.1 7.9 63 229-304 4-66 (73)
127 KOG1155 Anaphase-promoting com 94.9 0.46 9.9E-06 46.8 12.2 90 254-355 427-516 (559)
128 PF10579 Rapsyn_N: Rapsyn N-te 94.8 0.43 9.2E-06 35.4 9.2 70 222-296 8-77 (80)
129 KOG2076 RNA polymerase III tra 94.8 0.36 7.9E-06 50.9 11.9 100 217-332 136-235 (895)
130 PF08631 SPO22: Meiosis protei 94.7 0.47 1E-05 44.3 11.7 112 231-344 4-122 (278)
131 KOG1126 DNA-binding cell divis 94.7 0.057 1.2E-06 54.9 5.7 88 230-333 431-518 (638)
132 PF13181 TPR_8: Tetratricopept 94.6 0.065 1.4E-06 32.4 3.9 30 305-334 2-31 (34)
133 COG4783 Putative Zn-dependent 94.6 0.42 9.1E-06 47.2 11.2 93 224-332 310-402 (484)
134 KOG4555 TPR repeat-containing 94.4 1.2 2.7E-05 36.6 11.6 97 225-333 48-144 (175)
135 KOG2002 TPR-containing nuclear 94.2 0.93 2E-05 48.4 13.5 119 224-355 456-576 (1018)
136 cd05804 StaR_like StaR_like; a 94.1 0.36 7.8E-06 46.1 9.8 75 254-336 106-180 (355)
137 KOG1941 Acetylcholine receptor 94.0 0.66 1.4E-05 44.5 10.7 123 231-357 133-257 (518)
138 PRK15363 pathogenicity island 94.0 0.23 4.9E-06 42.1 7.0 73 259-344 32-104 (157)
139 KOG1125 TPR repeat-containing 93.9 0.17 3.6E-06 50.9 7.1 72 235-314 479-554 (579)
140 KOG0553 TPR repeat-containing 93.9 0.15 3.2E-06 47.4 6.2 61 224-292 119-179 (304)
141 COG4700 Uncharacterized protei 93.9 0.89 1.9E-05 39.7 10.4 100 220-332 89-188 (251)
142 PRK10866 outer membrane biogen 93.8 0.66 1.4E-05 42.4 10.5 81 263-353 33-113 (243)
143 PRK10747 putative protoheme IX 93.8 0.33 7.2E-06 47.8 9.1 98 227-332 160-291 (398)
144 KOG2376 Signal recognition par 93.7 0.8 1.7E-05 46.4 11.4 106 226-331 116-251 (652)
145 PF10300 DUF3808: Protein of u 93.7 1.3 2.7E-05 44.7 13.2 139 207-356 246-399 (468)
146 KOG1155 Anaphase-promoting com 93.7 0.42 9.1E-06 47.1 9.2 94 234-335 344-463 (559)
147 KOG2076 RNA polymerase III tra 93.7 0.48 1E-05 50.0 10.2 94 221-329 415-508 (895)
148 TIGR00540 hemY_coli hemY prote 93.6 2.7 5.9E-05 41.4 15.3 108 222-349 86-193 (409)
149 PRK10747 putative protoheme IX 93.6 0.51 1.1E-05 46.4 10.0 61 265-334 331-391 (398)
150 PLN03081 pentatricopeptide (PP 93.6 1.1 2.4E-05 47.4 13.2 89 265-361 497-603 (697)
151 COG2976 Uncharacterized protei 93.4 2.5 5.4E-05 37.2 12.4 98 223-334 92-189 (207)
152 KOG1129 TPR repeat-containing 93.3 0.14 3E-06 48.3 5.0 27 308-334 362-388 (478)
153 KOG0545 Aryl-hydrocarbon recep 93.3 1.5 3.2E-05 39.9 11.3 105 220-332 178-292 (329)
154 PF08631 SPO22: Meiosis protei 93.2 0.24 5.2E-06 46.3 6.6 80 272-351 3-85 (278)
155 PF12895 Apc3: Anaphase-promot 93.2 0.35 7.5E-06 36.0 6.3 58 222-288 27-84 (84)
156 PF00515 TPR_1: Tetratricopept 93.0 0.23 4.9E-06 30.0 4.2 30 263-292 2-31 (34)
157 KOG2003 TPR repeat-containing 93.0 0.56 1.2E-05 46.1 8.7 98 227-345 497-594 (840)
158 PF06552 TOM20_plant: Plant sp 92.9 1.4 3.1E-05 38.1 10.3 105 258-363 21-137 (186)
159 COG1729 Uncharacterized protei 92.9 0.59 1.3E-05 43.0 8.5 87 265-361 144-230 (262)
160 PF00244 14-3-3: 14-3-3 protei 92.8 2.6 5.6E-05 38.4 12.6 59 279-337 143-202 (236)
161 KOG2003 TPR repeat-containing 92.8 0.17 3.7E-06 49.5 5.0 117 209-332 138-265 (840)
162 KOG3060 Uncharacterized conser 92.7 0.65 1.4E-05 42.4 8.2 91 228-335 128-222 (289)
163 PF03704 BTAD: Bacterial trans 92.6 2 4.2E-05 35.5 10.8 74 222-303 64-138 (146)
164 PLN03088 SGT1, suppressor of 92.5 0.94 2E-05 43.9 9.9 70 222-304 38-107 (356)
165 COG3118 Thioredoxin domain-con 92.5 7.7 0.00017 36.3 15.0 137 209-354 118-301 (304)
166 PRK14574 hmsH outer membrane p 92.3 1.3 2.7E-05 47.8 11.3 105 226-332 333-444 (822)
167 PF07719 TPR_2: Tetratricopept 92.2 0.34 7.3E-06 29.0 4.2 30 263-292 2-31 (34)
168 KOG0624 dsRNA-activated protei 92.1 1.5 3.3E-05 41.8 10.0 119 218-354 267-386 (504)
169 KOG1174 Anaphase-promoting com 92.1 1.1 2.4E-05 43.7 9.3 67 258-333 434-500 (564)
170 KOG1079 Transcriptional repres 92.0 0.16 3.4E-06 51.8 3.7 41 96-136 666-710 (739)
171 KOG0624 dsRNA-activated protei 91.9 2.9 6.4E-05 39.9 11.7 116 219-355 37-152 (504)
172 KOG1585 Protein required for f 91.8 4.5 9.7E-05 36.9 12.3 99 233-337 44-143 (308)
173 KOG1586 Protein required for f 91.7 2.9 6.2E-05 37.9 10.9 101 226-331 79-181 (288)
174 PF10516 SHNi-TPR: SHNi-TPR; 91.6 0.41 8.9E-06 30.3 4.1 37 263-299 2-38 (38)
175 KOG1128 Uncharacterized conser 91.2 1.9 4E-05 44.9 10.4 119 198-332 458-581 (777)
176 KOG1941 Acetylcholine receptor 91.1 1.7 3.8E-05 41.7 9.4 100 235-336 177-278 (518)
177 PF12862 Apc5: Anaphase-promot 90.9 2.8 6.2E-05 32.1 9.2 81 231-313 9-90 (94)
178 PF04733 Coatomer_E: Coatomer 90.8 1.3 2.7E-05 41.7 8.5 97 235-352 182-279 (290)
179 PF09295 ChAPs: ChAPs (Chs5p-A 90.8 1.7 3.7E-05 42.7 9.6 82 231-328 211-292 (395)
180 PF13181 TPR_8: Tetratricopept 90.8 0.54 1.2E-05 28.2 4.1 31 263-293 2-32 (34)
181 KOG1174 Anaphase-promoting com 90.6 4.6 0.0001 39.6 11.8 106 222-335 336-469 (564)
182 PRK10153 DNA-binding transcrip 90.5 0.72 1.6E-05 47.1 6.9 69 263-345 421-489 (517)
183 PF10516 SHNi-TPR: SHNi-TPR; 90.5 0.45 9.7E-06 30.1 3.4 36 306-341 3-38 (38)
184 PF13428 TPR_14: Tetratricopep 90.4 0.46 9.9E-06 30.8 3.6 35 306-345 3-37 (44)
185 PF10602 RPN7: 26S proteasome 90.0 3.6 7.7E-05 35.7 10.0 103 223-332 39-141 (177)
186 KOG1338 Uncharacterized conser 89.9 0.44 9.4E-06 45.9 4.4 81 60-140 173-264 (466)
187 PF13428 TPR_14: Tetratricopep 89.8 0.95 2.1E-05 29.3 4.8 35 264-303 3-37 (44)
188 PLN03077 Protein ECB2; Provisi 89.8 7.1 0.00015 42.4 14.4 125 230-360 599-765 (857)
189 smart00101 14_3_3 14-3-3 homol 89.5 11 0.00024 34.4 13.2 57 278-334 144-201 (244)
190 PF14561 TPR_20: Tetratricopep 89.1 1.2 2.7E-05 34.0 5.7 54 261-314 21-89 (90)
191 PF13174 TPR_6: Tetratricopept 89.0 0.75 1.6E-05 27.2 3.6 29 264-292 2-30 (33)
192 PF13174 TPR_6: Tetratricopept 88.8 0.52 1.1E-05 27.9 2.8 28 306-333 2-29 (33)
193 PF13512 TPR_18: Tetratricopep 88.1 3 6.5E-05 34.8 7.7 51 222-277 49-99 (142)
194 KOG1081 Transcription factor N 88.0 0.24 5.1E-06 49.7 1.3 51 87-137 362-417 (463)
195 KOG4162 Predicted calmodulin-b 88.0 4.3 9.2E-05 42.5 10.2 92 228-335 692-785 (799)
196 KOG0508 Ankyrin repeat protein 88.0 0.57 1.2E-05 46.2 3.8 77 286-362 319-395 (615)
197 smart00028 TPR Tetratricopepti 88.0 0.61 1.3E-05 26.2 2.7 28 306-333 3-30 (34)
198 PF04781 DUF627: Protein of un 87.7 8.6 0.00019 30.6 9.7 101 226-332 2-106 (111)
199 COG3071 HemY Uncharacterized e 87.6 4.9 0.00011 39.0 9.8 69 254-334 323-391 (400)
200 PLN03218 maturation of RBCL 1; 87.4 6.1 0.00013 44.0 11.8 56 227-289 514-569 (1060)
201 KOG4162 Predicted calmodulin-b 86.9 6.3 0.00014 41.3 10.7 79 254-342 473-551 (799)
202 KOG4555 TPR repeat-containing 86.7 3.1 6.6E-05 34.3 6.7 58 269-334 50-107 (175)
203 KOG0508 Ankyrin repeat protein 86.1 0.39 8.4E-06 47.3 1.6 71 245-315 320-390 (615)
204 KOG1129 TPR repeat-containing 86.1 1.6 3.4E-05 41.4 5.5 97 230-334 334-459 (478)
205 PRK14720 transcript cleavage f 85.8 3.9 8.4E-05 44.3 9.0 63 264-335 118-180 (906)
206 PF09986 DUF2225: Uncharacteri 85.8 2.4 5.3E-05 38.0 6.5 89 275-364 90-179 (214)
207 COG4783 Putative Zn-dependent 85.8 5.7 0.00012 39.5 9.4 108 228-355 348-472 (484)
208 PRK14720 transcript cleavage f 85.7 11 0.00024 41.0 12.3 113 227-358 38-162 (906)
209 COG5010 TadD Flp pilus assembl 85.4 5.5 0.00012 36.5 8.5 84 267-358 105-190 (257)
210 KOG3081 Vesicle coat complex C 85.1 32 0.00069 31.9 13.3 82 261-354 206-287 (299)
211 KOG2796 Uncharacterized conser 85.0 5.5 0.00012 36.8 8.2 121 230-366 222-342 (366)
212 PF09295 ChAPs: ChAPs (Chs5p-A 84.8 5.2 0.00011 39.4 8.7 92 232-342 181-272 (395)
213 cd02681 MIT_calpain7_1 MIT: do 84.8 4.7 0.0001 29.8 6.5 50 303-352 5-57 (76)
214 PF09670 Cas_Cas02710: CRISPR- 84.8 20 0.00043 35.1 12.8 113 223-341 134-282 (379)
215 PF13431 TPR_17: Tetratricopep 84.6 1.3 2.8E-05 27.1 2.9 24 259-282 10-33 (34)
216 COG4235 Cytochrome c biogenesi 84.6 21 0.00046 33.4 12.1 115 226-360 162-279 (287)
217 KOG1156 N-terminal acetyltrans 84.3 6.9 0.00015 40.3 9.4 96 222-333 9-104 (700)
218 PLN03218 maturation of RBCL 1; 84.2 11 0.00024 42.1 11.8 56 229-289 551-606 (1060)
219 PRK15331 chaperone protein Sic 84.2 5.8 0.00013 33.9 7.6 75 258-340 33-107 (165)
220 PF05053 Menin: Menin; InterP 84.0 20 0.00043 36.6 12.3 79 279-360 296-376 (618)
221 PF12569 NARP1: NMDA receptor- 83.8 3.7 8E-05 41.9 7.5 62 261-330 193-254 (517)
222 COG2976 Uncharacterized protei 83.6 21 0.00045 31.5 10.9 61 264-329 91-151 (207)
223 PLN02789 farnesyltranstransfer 83.3 23 0.00049 33.8 12.3 94 232-333 49-171 (320)
224 PF10602 RPN7: 26S proteasome 83.0 8.7 0.00019 33.2 8.6 72 260-336 34-105 (177)
225 PF04184 ST7: ST7 protein; In 82.9 16 0.00035 36.7 11.2 91 232-332 180-287 (539)
226 PF13431 TPR_17: Tetratricopep 82.8 0.73 1.6E-05 28.2 1.2 25 300-324 9-33 (34)
227 KOG3617 WD40 and TPR repeat-co 82.7 6.4 0.00014 41.8 8.5 74 231-330 811-884 (1416)
228 COG3947 Response regulator con 82.6 11 0.00024 35.4 9.2 72 263-342 280-351 (361)
229 PF07721 TPR_4: Tetratricopept 82.4 1.4 2.9E-05 25.1 2.2 24 306-329 3-26 (26)
230 KOG2041 WD40 repeat protein [G 82.1 27 0.00058 36.7 12.5 119 203-325 717-873 (1189)
231 KOG1585 Protein required for f 81.7 12 0.00026 34.3 8.9 82 254-337 23-104 (308)
232 KOG0376 Serine-threonine phosp 81.0 5.6 0.00012 39.5 7.2 104 223-347 7-110 (476)
233 COG2909 MalT ATP-dependent tra 80.9 36 0.00078 36.6 13.4 103 227-337 422-530 (894)
234 PF04910 Tcf25: Transcriptiona 80.7 37 0.00079 33.0 12.8 81 209-289 25-130 (360)
235 KOG3785 Uncharacterized conser 80.6 10 0.00022 36.5 8.5 87 229-330 31-117 (557)
236 PLN03081 pentatricopeptide (PP 80.5 6.1 0.00013 41.8 8.1 61 264-331 393-453 (697)
237 PF14561 TPR_20: Tetratricopep 80.4 4.4 9.5E-05 30.9 5.1 50 305-355 23-88 (90)
238 KOG0550 Molecular chaperone (D 80.1 8.1 0.00018 37.8 7.8 95 230-333 213-316 (486)
239 PLN03077 Protein ECB2; Provisi 80.1 16 0.00034 39.8 11.2 90 227-329 561-650 (857)
240 PF04184 ST7: ST7 protein; In 80.0 11 0.00024 37.8 8.9 63 261-329 258-320 (539)
241 PF09311 Rab5-bind: Rabaptin-l 79.8 4.4 9.6E-05 35.3 5.6 48 256-303 134-181 (181)
242 PF04733 Coatomer_E: Coatomer 79.5 6.6 0.00014 36.9 7.0 85 230-332 141-229 (290)
243 PF15015 NYD-SP12_N: Spermatog 79.3 29 0.00063 34.3 11.2 132 222-361 178-319 (569)
244 TIGR03504 FimV_Cterm FimV C-te 79.1 4.4 9.5E-05 26.5 4.0 25 308-332 3-27 (44)
245 PF07721 TPR_4: Tetratricopept 78.9 3.4 7.3E-05 23.4 3.1 24 264-287 3-26 (26)
246 smart00028 TPR Tetratricopepti 78.2 4.4 9.5E-05 22.3 3.7 28 264-291 3-30 (34)
247 PF11817 Foie-gras_1: Foie gra 78.2 28 0.0006 31.8 10.7 66 261-328 177-242 (247)
248 KOG1586 Protein required for f 78.1 55 0.0012 29.9 12.7 57 277-335 88-145 (288)
249 KOG3081 Vesicle coat complex C 77.8 29 0.00063 32.2 10.2 64 288-352 192-268 (299)
250 PRK10941 hypothetical protein; 76.4 29 0.00063 32.3 10.2 85 260-357 179-263 (269)
251 PF14853 Fis1_TPR_C: Fis1 C-te 76.1 13 0.00028 25.4 5.8 43 307-354 4-46 (53)
252 cd02682 MIT_AAA_Arch MIT: doma 76.0 17 0.00036 26.8 6.8 52 304-355 6-59 (75)
253 TIGR02710 CRISPR-associated pr 76.0 51 0.0011 32.3 12.0 59 225-286 135-195 (380)
254 PF11817 Foie-gras_1: Foie gra 75.7 20 0.00044 32.7 9.0 59 300-360 174-232 (247)
255 KOG3364 Membrane protein invol 75.7 29 0.00063 28.8 8.7 86 261-355 31-117 (149)
256 PF12569 NARP1: NMDA receptor- 75.5 44 0.00096 34.2 12.1 36 304-339 305-340 (517)
257 PF10345 Cohesin_load: Cohesin 75.1 92 0.002 32.5 14.8 110 221-335 60-170 (608)
258 PLN02789 farnesyltranstransfer 75.0 30 0.00064 33.1 10.2 48 262-317 142-189 (320)
259 PRK10153 DNA-binding transcrip 74.8 29 0.00063 35.5 10.7 30 305-334 421-450 (517)
260 KOG4340 Uncharacterized conser 74.8 19 0.00041 34.0 8.3 79 235-329 25-103 (459)
261 PRK11906 transcriptional regul 74.8 18 0.00039 36.0 8.8 68 254-332 333-400 (458)
262 cd02679 MIT_spastin MIT: domai 74.7 18 0.00039 26.9 6.8 61 304-364 8-77 (79)
263 PRK00398 rpoP DNA-directed RNA 74.4 2.5 5.4E-05 27.8 1.9 29 178-208 3-31 (46)
264 KOG4234 TPR repeat-containing 74.2 17 0.00037 32.3 7.5 60 224-291 138-197 (271)
265 TIGR03504 FimV_Cterm FimV C-te 73.9 3.6 7.9E-05 26.9 2.6 26 265-290 2-27 (44)
266 KOG4814 Uncharacterized conser 73.2 47 0.001 34.6 11.3 103 224-336 358-460 (872)
267 cd02683 MIT_1 MIT: domain cont 73.2 16 0.00034 27.0 6.2 52 303-354 5-58 (77)
268 PF14853 Fis1_TPR_C: Fis1 C-te 72.9 7.6 0.00016 26.5 4.1 28 264-291 3-30 (53)
269 COG4700 Uncharacterized protei 71.8 17 0.00037 31.9 6.9 68 260-334 87-154 (251)
270 KOG2300 Uncharacterized conser 71.6 69 0.0015 32.3 11.7 67 273-343 456-522 (629)
271 COG0457 NrfG FOG: TPR repeat [ 70.4 41 0.00088 27.8 9.3 96 229-336 139-234 (291)
272 PF09311 Rab5-bind: Rabaptin-l 69.8 8 0.00017 33.7 4.6 51 295-345 131-181 (181)
273 PF12968 DUF3856: Domain of Un 68.5 54 0.0012 26.7 8.5 63 275-337 22-88 (144)
274 KOG2047 mRNA splicing factor [ 67.9 1.1E+02 0.0024 32.0 12.6 39 310-349 664-717 (835)
275 cd02684 MIT_2 MIT: domain cont 67.9 33 0.00072 25.1 6.9 52 303-354 5-58 (75)
276 KOG0495 HAT repeat protein [RN 67.1 76 0.0017 33.3 11.3 30 305-334 652-681 (913)
277 KOG2461 Transcription factor B 67.1 3 6.6E-05 40.9 1.5 27 113-139 121-147 (396)
278 KOG1127 TPR repeat-containing 67.0 41 0.00089 36.8 9.7 104 226-338 602-705 (1238)
279 TIGR01010 BexC_CtrB_KpsE polys 66.7 81 0.0018 30.4 11.5 81 276-363 180-262 (362)
280 KOG1308 Hsp70-interacting prot 66.4 5.1 0.00011 38.2 2.8 98 219-332 113-210 (377)
281 KOG4340 Uncharacterized conser 66.4 17 0.00036 34.3 6.0 62 263-332 145-206 (459)
282 PF01485 IBR: IBR domain; Int 66.0 4.3 9.3E-05 28.2 1.8 28 179-206 19-48 (64)
283 KOG4563 Cell cycle-regulated h 65.8 14 0.00031 35.5 5.6 57 268-324 47-103 (400)
284 PF10255 Paf67: RNA polymerase 65.8 24 0.00052 34.8 7.4 73 265-337 125-197 (404)
285 PF01535 PPR: PPR repeat; Int 65.4 9.4 0.0002 21.7 3.0 26 265-290 3-28 (31)
286 COG3071 HemY Uncharacterized e 65.3 1.4E+02 0.0031 29.2 13.5 110 221-350 85-194 (400)
287 KOG2561 Adaptor protein NUB1, 65.2 26 0.00056 34.7 7.3 111 222-334 165-297 (568)
288 PF04212 MIT: MIT (microtubule 65.1 23 0.00051 25.1 5.6 37 303-339 4-40 (69)
289 smart00745 MIT Microtubule Int 64.9 37 0.0008 24.6 6.8 35 303-337 7-41 (77)
290 PF00244 14-3-3: 14-3-3 protei 64.2 23 0.00049 32.2 6.6 57 237-293 143-200 (236)
291 cd02680 MIT_calpain7_2 MIT: do 63.9 33 0.00071 25.3 6.1 47 303-352 5-52 (75)
292 KOG2471 TPR repeat-containing 63.5 16 0.00034 36.7 5.6 104 230-337 250-368 (696)
293 PF10952 DUF2753: Protein of u 63.3 53 0.0011 26.8 7.6 67 266-332 5-78 (140)
294 KOG0543 FKBP-type peptidyl-pro 63.2 1.6E+02 0.0034 29.0 12.3 95 223-332 260-354 (397)
295 KOG3783 Uncharacterized conser 62.7 56 0.0012 33.2 9.4 64 268-332 455-519 (546)
296 PF02259 FAT: FAT domain; Int 62.5 1.1E+02 0.0025 28.7 11.5 111 223-337 149-291 (352)
297 COG5159 RPN6 26S proteasome re 61.4 1.2E+02 0.0027 28.6 10.6 48 228-279 11-62 (421)
298 COG4235 Cytochrome c biogenesi 61.2 37 0.00081 31.8 7.4 70 258-332 152-221 (287)
299 KOG0551 Hsp90 co-chaperone CNS 60.6 86 0.0019 30.1 9.7 92 226-330 87-179 (390)
300 KOG2300 Uncharacterized conser 60.4 93 0.002 31.5 10.2 95 230-328 455-551 (629)
301 PRK11906 transcriptional regul 60.4 66 0.0014 32.2 9.3 78 257-347 290-376 (458)
302 cd02681 MIT_calpain7_1 MIT: do 60.4 66 0.0014 23.7 8.0 34 219-252 5-38 (76)
303 COG3947 Response regulator con 59.9 47 0.001 31.3 7.7 68 223-298 282-349 (361)
304 cd02677 MIT_SNX15 MIT: domain 59.8 55 0.0012 24.0 6.7 47 303-349 5-52 (75)
305 KOG1127 TPR repeat-containing 59.7 64 0.0014 35.4 9.5 99 223-337 5-107 (1238)
306 PF08271 TF_Zn_Ribbon: TFIIB z 59.4 4.9 0.00011 26.0 1.0 29 180-210 2-31 (43)
307 KOG2796 Uncharacterized conser 58.4 1.6E+02 0.0035 27.5 10.9 57 265-328 180-236 (366)
308 KOG3617 WD40 and TPR repeat-co 58.4 67 0.0015 34.6 9.3 95 231-336 837-944 (1416)
309 PF13281 DUF4071: Domain of un 57.9 1.3E+02 0.0028 29.4 10.8 75 253-331 132-209 (374)
310 PF04810 zf-Sec23_Sec24: Sec23 57.7 5.7 0.00012 25.3 1.0 28 179-208 3-34 (40)
311 KOG2610 Uncharacterized conser 57.3 59 0.0013 31.3 8.0 97 224-335 107-206 (491)
312 KOG3060 Uncharacterized conser 57.1 1.5E+02 0.0032 27.5 10.2 64 222-293 156-222 (289)
313 KOG3785 Uncharacterized conser 56.9 1.9E+02 0.0041 28.2 11.3 51 230-288 67-117 (557)
314 PF12753 Nro1: Nuclear pore co 56.4 20 0.00043 35.0 4.9 70 278-352 334-403 (404)
315 cd02678 MIT_VPS4 MIT: domain c 55.7 56 0.0012 23.7 6.3 45 303-347 5-50 (75)
316 TIGR00756 PPR pentatricopeptid 55.5 18 0.0004 20.8 3.1 25 265-289 3-27 (35)
317 cd02656 MIT MIT: domain contai 55.4 58 0.0013 23.5 6.4 35 304-338 6-40 (75)
318 KOG1497 COP9 signalosome, subu 54.8 1.5E+02 0.0033 28.3 10.2 71 259-333 100-173 (399)
319 COG2909 MalT ATP-dependent tra 54.8 2.9E+02 0.0063 30.1 13.3 118 222-348 539-660 (894)
320 PF06552 TOM20_plant: Plant sp 54.8 90 0.002 27.2 8.2 51 236-294 51-105 (186)
321 COG0457 NrfG FOG: TPR repeat [ 54.6 1.2E+02 0.0026 24.8 10.6 92 230-336 177-268 (291)
322 PF09613 HrpB1_HrpK: Bacterial 53.9 1.4E+02 0.003 25.4 9.6 59 223-289 13-71 (160)
323 PF10867 DUF2664: Protein of u 53.5 14 0.00031 28.1 2.7 26 331-356 10-35 (89)
324 KOG1156 N-terminal acetyltrans 53.4 2.4E+02 0.0053 29.5 12.1 103 232-352 87-189 (700)
325 COG3629 DnrI DNA-binding trans 53.2 1.4E+02 0.003 28.0 9.8 72 220-299 153-224 (280)
326 COG5600 Transcription-associat 53.1 62 0.0013 31.5 7.5 68 263-334 178-250 (413)
327 smart00101 14_3_3 14-3-3 homol 52.5 94 0.002 28.4 8.5 77 280-356 91-180 (244)
328 PF12854 PPR_1: PPR repeat 52.5 24 0.00052 21.3 3.2 25 263-287 8-32 (34)
329 PF10345 Cohesin_load: Cohesin 52.4 1.5E+02 0.0031 31.0 11.1 74 260-336 57-131 (608)
330 COG4105 ComL DNA uptake lipopr 52.1 1.9E+02 0.0042 26.6 14.3 107 222-337 73-200 (254)
331 PF10373 EST1_DNA_bind: Est1 D 52.0 21 0.00045 32.7 4.3 44 281-332 1-44 (278)
332 PF13041 PPR_2: PPR repeat fam 51.9 27 0.00059 22.8 3.8 28 263-290 4-31 (50)
333 PF02259 FAT: FAT domain; Int 51.8 71 0.0015 30.1 8.1 86 243-332 125-212 (352)
334 cd09034 BRO1_Alix_like Protein 51.1 2.3E+02 0.0049 27.0 11.5 62 302-363 249-317 (345)
335 PF09082 DUF1922: Domain of un 51.1 5 0.00011 28.8 -0.0 31 179-213 4-34 (68)
336 PF13812 PPR_3: Pentatricopept 51.0 28 0.0006 20.2 3.4 27 264-290 3-29 (34)
337 KOG1128 Uncharacterized conser 50.5 27 0.00058 36.7 5.0 51 274-332 497-547 (777)
338 TIGR02059 swm_rep_I cyanobacte 50.0 30 0.00064 26.9 4.0 24 115-138 76-99 (101)
339 COG3629 DnrI DNA-binding trans 49.5 1.2E+02 0.0026 28.3 8.8 76 262-345 153-228 (280)
340 KOG1464 COP9 signalosome, subu 49.0 1.4E+02 0.003 28.0 8.8 84 263-349 146-233 (440)
341 PF10952 DUF2753: Protein of u 48.7 1.5E+02 0.0032 24.3 8.5 73 226-298 7-86 (140)
342 COG4649 Uncharacterized protei 48.1 1.9E+02 0.0041 25.3 10.2 99 223-332 97-195 (221)
343 PF04910 Tcf25: Transcriptiona 48.1 2.5E+02 0.0055 27.2 11.3 40 258-297 36-75 (360)
344 KOG0495 HAT repeat protein [RN 47.9 1.2E+02 0.0026 32.0 9.0 15 67-81 464-478 (913)
345 KOG4648 Uncharacterized conser 47.9 65 0.0014 31.1 6.7 45 268-313 103-147 (536)
346 KOG0546 HSP90 co-chaperone CPR 46.9 39 0.00084 32.6 5.1 108 217-332 219-337 (372)
347 PF10300 DUF3808: Protein of u 46.9 56 0.0012 33.0 6.7 25 307-331 270-294 (468)
348 smart00661 RPOL9 RNA polymeras 46.8 14 0.00031 24.5 1.7 24 185-208 5-30 (52)
349 PF04423 Rad50_zn_hook: Rad50 45.7 32 0.00069 23.3 3.4 26 200-225 22-47 (54)
350 PF02150 RNA_POL_M_15KD: RNA p 45.6 6.8 0.00015 24.2 -0.0 26 185-210 6-32 (35)
351 KOG2053 Mitochondrial inherita 45.5 2.3E+02 0.0049 30.9 10.8 63 227-301 50-112 (932)
352 cd02678 MIT_VPS4 MIT: domain c 45.4 1.2E+02 0.0025 22.0 7.0 36 218-253 4-39 (75)
353 KOG4814 Uncharacterized conser 44.9 3.2E+02 0.0069 28.9 11.4 103 241-343 735-848 (872)
354 PRK11519 tyrosine kinase; Prov 44.2 1.6E+02 0.0036 31.4 10.1 30 331-360 327-356 (719)
355 KOG4563 Cell cycle-regulated h 44.2 94 0.002 30.1 7.2 62 218-279 39-100 (400)
356 PF08666 SAF: SAF domain; Int 43.9 15 0.00033 25.3 1.6 18 117-134 3-20 (63)
357 KOG2155 Tubulin-tyrosine ligas 43.6 18 0.0004 35.6 2.5 60 90-149 199-264 (631)
358 KOG2053 Mitochondrial inherita 43.6 1.5E+02 0.0033 32.1 9.3 85 232-332 21-105 (932)
359 PF07754 DUF1610: Domain of un 43.6 18 0.00039 20.4 1.5 10 196-205 14-23 (24)
360 PF10938 YfdX: YfdX protein; 43.2 1.6E+02 0.0036 24.8 8.0 109 225-336 7-149 (155)
361 KOG2610 Uncharacterized conser 43.1 1E+02 0.0022 29.8 7.2 88 230-329 185-272 (491)
362 smart00647 IBR In Between Ring 43.0 23 0.0005 24.4 2.4 28 179-206 19-48 (64)
363 KOG2581 26S proteasome regulat 42.9 2.7E+02 0.0059 27.6 10.2 75 252-332 199-275 (493)
364 KOG1070 rRNA processing protei 42.6 4.1E+02 0.0089 30.8 12.5 63 264-334 1532-1594(1710)
365 PF04071 zf-like: Cysteine-ric 42.5 1E+02 0.0022 23.4 5.8 42 185-226 37-79 (86)
366 COG1198 PriA Primosomal protei 42.2 1E+02 0.0022 33.0 7.9 33 311-343 639-678 (730)
367 COG4649 Uncharacterized protei 42.2 79 0.0017 27.6 5.8 71 229-308 141-211 (221)
368 cd02682 MIT_AAA_Arch MIT: doma 41.8 1.4E+02 0.003 21.9 7.9 35 219-253 5-39 (75)
369 KOG0686 COP9 signalosome, subu 41.5 95 0.0021 30.6 6.9 60 226-290 156-215 (466)
370 PF13281 DUF4071: Domain of un 41.5 1.3E+02 0.0028 29.4 8.0 70 262-335 179-257 (374)
371 KOG2422 Uncharacterized conser 41.2 4.3E+02 0.0094 27.5 11.8 71 220-290 284-370 (665)
372 KOG3616 Selective LIM binding 41.0 2E+02 0.0043 30.8 9.4 36 294-329 871-907 (1636)
373 COG2888 Predicted Zn-ribbon RN 40.9 19 0.00042 25.1 1.6 28 177-206 26-58 (61)
374 PF09297 zf-NADH-PPase: NADH p 40.5 21 0.00046 21.3 1.6 23 185-207 8-30 (32)
375 PRK13184 pknD serine/threonine 40.3 3E+02 0.0066 30.5 11.3 63 283-353 533-596 (932)
376 KOG1070 rRNA processing protei 40.0 2.4E+02 0.0052 32.5 10.3 89 231-335 1469-1561(1710)
377 KOG4322 Anaphase-promoting com 39.3 3.6E+02 0.0077 27.0 10.4 119 217-339 270-388 (482)
378 KOG2047 mRNA splicing factor [ 39.2 1.8E+02 0.0039 30.6 8.8 100 229-335 178-279 (835)
379 COG1997 RPL43A Ribosomal prote 38.4 23 0.00049 26.8 1.8 30 178-209 35-64 (89)
380 PF04053 Coatomer_WDAD: Coatom 37.9 95 0.0021 31.1 6.7 28 263-290 348-375 (443)
381 PF12921 ATP13: Mitochondrial 37.3 2E+02 0.0044 23.2 7.4 83 265-349 5-95 (126)
382 PF12760 Zn_Tnp_IS1595: Transp 37.0 36 0.00078 22.2 2.4 28 178-206 18-45 (46)
383 PF04212 MIT: MIT (microtubule 36.9 88 0.0019 22.1 4.7 31 220-250 5-35 (69)
384 cd02679 MIT_spastin MIT: domai 36.9 1.7E+02 0.0038 21.6 6.6 32 220-251 8-39 (79)
385 PF02748 PyrI_C: Aspartate car 36.7 25 0.00054 23.9 1.7 20 194-213 31-50 (52)
386 PHA02537 M terminase endonucle 36.4 2.4E+02 0.0053 25.5 8.4 104 231-337 94-211 (230)
387 cd09247 BRO1_Alix_like_2 Prote 36.3 1.8E+02 0.0038 28.1 8.1 61 303-363 252-316 (346)
388 PF11207 DUF2989: Protein of u 36.0 3.1E+02 0.0068 24.3 10.6 64 255-323 134-197 (203)
389 cd02683 MIT_1 MIT: domain cont 35.9 1.8E+02 0.0038 21.4 6.7 34 221-254 7-40 (77)
390 COG3524 KpsE Capsule polysacch 34.8 4.1E+02 0.0088 25.3 10.9 79 279-364 192-272 (372)
391 PF08646 Rep_fac-A_C: Replicat 34.5 20 0.00043 29.8 1.1 28 180-208 20-47 (146)
392 PRK11827 hypothetical protein; 34.4 34 0.00075 24.0 2.1 34 174-209 4-37 (60)
393 TIGR03017 EpsF chain length de 34.4 3.5E+02 0.0075 26.7 10.2 34 328-361 267-300 (444)
394 PRK06266 transcription initiat 34.1 31 0.00066 30.0 2.2 19 60-78 47-65 (178)
395 KOG1464 COP9 signalosome, subu 33.0 4.2E+02 0.0091 24.9 9.8 117 222-342 67-183 (440)
396 PF01599 Ribosomal_S27: Riboso 32.8 26 0.00057 23.3 1.2 28 178-206 18-46 (47)
397 cd02680 MIT_calpain7_2 MIT: do 32.8 96 0.0021 22.8 4.3 33 220-252 6-38 (75)
398 smart00659 RPOLCX RNA polymera 32.3 32 0.0007 22.4 1.6 10 198-207 19-28 (44)
399 PRK05685 fliS flagellar protei 32.2 2.8E+02 0.006 22.6 9.1 81 216-296 31-125 (132)
400 KOG0978 E3 ubiquitin ligase in 32.2 8.7 0.00019 40.2 -1.7 62 146-216 635-696 (698)
401 TIGR03007 pepcterm_ChnLen poly 31.7 5.5E+02 0.012 25.8 13.8 39 324-362 256-294 (498)
402 cd02684 MIT_2 MIT: domain cont 31.3 2.1E+02 0.0045 20.8 6.8 36 219-254 5-40 (75)
403 PF11781 RRN7: RNA polymerase 31.2 32 0.0007 21.4 1.4 27 179-208 9-35 (36)
404 KOG0994 Extracellular matrix g 30.9 5.5E+02 0.012 29.2 11.0 167 157-356 1096-1294(1758)
405 KOG2709 Uncharacterized conser 30.7 1.2E+02 0.0026 30.0 5.8 59 304-362 22-91 (560)
406 PRK09841 cryptic autophosphory 30.7 3.1E+02 0.0068 29.4 9.6 29 333-361 329-357 (726)
407 COG2715 SpmA Uncharacterized m 30.4 2.6E+02 0.0056 24.3 7.0 73 268-345 54-129 (206)
408 PF04781 DUF627: Protein of un 29.9 1.2E+02 0.0026 24.2 4.7 24 268-291 2-25 (111)
409 PF04190 DUF410: Protein of un 29.2 4.5E+02 0.0098 24.1 11.3 102 221-328 11-114 (260)
410 PF10255 Paf67: RNA polymerase 29.1 75 0.0016 31.4 4.2 64 232-295 134-197 (404)
411 KOG2908 26S proteasome regulat 29.0 5.4E+02 0.012 24.9 10.8 73 267-341 80-152 (380)
412 KOG2008 BTK-associated SH3-dom 28.4 5.2E+02 0.011 24.6 11.1 41 327-367 195-235 (426)
413 KOG1463 26S proteasome regulat 28.3 5.4E+02 0.012 25.0 9.4 66 265-332 131-196 (411)
414 PF03604 DNA_RNApol_7kD: DNA d 28.0 48 0.001 20.0 1.7 10 198-207 17-26 (32)
415 PF12931 Sec16_C: Sec23-bindin 27.9 1.4E+02 0.0031 27.8 5.8 59 302-361 196-255 (284)
416 COG2158 Uncharacterized protei 27.4 1.1E+02 0.0023 24.1 3.8 33 190-222 54-86 (112)
417 PF11207 DUF2989: Protein of u 27.3 2.3E+02 0.005 25.1 6.5 52 229-284 149-200 (203)
418 COG5349 Uncharacterized protei 27.2 27 0.00059 28.1 0.6 12 200-211 42-53 (126)
419 KOG0276 Vesicle coat complex C 27.0 5.6E+02 0.012 26.9 9.9 86 265-352 669-772 (794)
420 PF07282 OrfB_Zn_ribbon: Putat 26.8 54 0.0012 23.2 2.2 33 178-212 28-60 (69)
421 COG4785 NlpI Lipoprotein NlpI, 26.4 2.8E+02 0.0062 25.2 6.9 64 226-290 64-127 (297)
422 COG3118 Thioredoxin domain-con 26.3 2.1E+02 0.0046 27.0 6.4 56 258-314 232-303 (304)
423 cd02656 MIT MIT: domain contai 26.3 2.5E+02 0.0053 20.1 7.2 35 220-254 6-40 (75)
424 KOG1538 Uncharacterized conser 26.2 1.7E+02 0.0036 30.9 6.0 62 268-329 779-842 (1081)
425 COG1084 Predicted GTPase [Gene 26.1 3.2E+02 0.0068 26.3 7.6 89 253-341 74-165 (346)
426 COG1675 TFA1 Transcription ini 26.1 2E+02 0.0042 25.0 5.8 42 142-191 102-143 (176)
427 COG1594 RPB9 DNA-directed RNA 26.1 39 0.00084 27.0 1.4 27 185-211 7-35 (113)
428 smart00671 SEL1 Sel1-like repe 26.1 1.1E+02 0.0025 17.7 3.3 27 306-332 3-33 (36)
429 KOG0551 Hsp90 co-chaperone CNS 26.0 1.7E+02 0.0038 28.1 5.8 54 232-293 131-184 (390)
430 cd07625 BAR_Vps17p The Bin/Amp 25.7 5E+02 0.011 23.5 8.9 24 258-281 71-94 (230)
431 PRK00420 hypothetical protein; 25.7 2.9E+02 0.0064 22.0 6.3 29 178-209 23-51 (112)
432 PF12773 DZR: Double zinc ribb 25.6 60 0.0013 21.3 2.1 30 178-210 12-41 (50)
433 PF05053 Menin: Menin; InterP 25.6 7.7E+02 0.017 25.6 10.5 76 236-314 295-371 (618)
434 COG1781 PyrI Aspartate carbamo 25.4 41 0.00088 28.2 1.4 17 197-213 134-150 (153)
435 KOG0545 Aryl-hydrocarbon recep 25.3 5.5E+02 0.012 23.8 8.6 80 264-346 180-269 (329)
436 cd09246 BRO1_Alix_like_1 Prote 25.3 4.6E+02 0.01 25.3 9.0 36 300-335 243-278 (353)
437 TIGR02561 HrpB1_HrpK type III 25.0 4.2E+02 0.0092 22.4 10.8 52 231-290 21-72 (153)
438 PRK06266 transcription initiat 25.0 1.1E+02 0.0023 26.6 4.0 15 57-71 33-47 (178)
439 PF03097 BRO1: BRO1-like domai 24.9 6.2E+02 0.014 24.3 12.5 36 303-338 238-273 (377)
440 TIGR00595 priA primosomal prot 24.5 57 0.0012 33.3 2.6 10 198-207 253-262 (505)
441 PRK14873 primosome assembly pr 24.5 49 0.0011 35.0 2.1 27 198-224 422-451 (665)
442 PF07720 TPR_3: Tetratricopept 24.5 1.6E+02 0.0034 18.2 3.6 22 307-328 4-25 (36)
443 PRK00415 rps27e 30S ribosomal 23.9 45 0.00098 23.3 1.2 31 176-208 9-40 (59)
444 PHA00626 hypothetical protein 23.5 1E+02 0.0022 21.3 2.8 17 196-212 21-37 (59)
445 PF01780 Ribosomal_L37ae: Ribo 23.2 72 0.0016 24.4 2.2 29 178-208 35-63 (90)
446 PF07840 FadR_C: FadR C-termin 23.1 4.8E+02 0.01 22.3 8.5 54 296-352 83-144 (164)
447 COG2846 Regulator of cell morp 23.0 1.6E+02 0.0035 26.1 4.6 32 331-362 99-130 (221)
448 COG1096 Predicted RNA-binding 23.0 50 0.0011 28.8 1.5 22 185-208 154-175 (188)
449 PRK00432 30S ribosomal protein 23.0 58 0.0012 21.9 1.5 24 180-207 22-46 (50)
450 KOG2471 TPR repeat-containing 22.8 8.4E+02 0.018 25.0 12.2 34 302-335 617-650 (696)
451 cd09243 BRO1_Brox_like Protein 22.6 3.3E+02 0.0072 26.4 7.3 37 300-336 244-280 (353)
452 KOG0796 Spliceosome subunit [R 22.4 6.8E+02 0.015 23.8 11.3 40 211-250 122-161 (319)
453 KOG0006 E3 ubiquitin-protein l 22.3 52 0.0011 31.1 1.6 32 176-207 313-345 (446)
454 KOG3824 Huntingtin interacting 22.0 2.1E+02 0.0045 27.4 5.4 71 255-333 109-179 (472)
455 COG1188 Ribosome-associated he 21.7 92 0.002 24.3 2.6 19 119-137 44-62 (100)
456 smart00858 SAF This domain fam 21.7 62 0.0014 22.1 1.6 16 117-132 3-18 (64)
457 PF07079 DUF1347: Protein of u 21.4 4.9E+02 0.011 26.3 8.1 60 219-287 461-520 (549)
458 COG1198 PriA Primosomal protei 21.1 1E+02 0.0022 33.0 3.6 27 198-224 475-504 (730)
459 cd09240 BRO1_Alix Protein-inte 20.9 3.7E+02 0.0081 25.8 7.3 61 303-363 254-316 (346)
460 KOG2561 Adaptor protein NUB1, 20.8 1.8E+02 0.004 29.0 5.0 81 264-348 165-255 (568)
461 TIGR01053 LSD1 zinc finger dom 20.8 1E+02 0.0022 18.5 2.1 23 185-207 6-28 (31)
462 PF05168 HEPN: HEPN domain; I 20.7 3.8E+02 0.0083 20.3 7.4 31 214-244 2-32 (118)
463 cd00729 rubredoxin_SM Rubredox 20.3 40 0.00087 20.6 0.3 12 198-209 2-13 (34)
464 TIGR00373 conserved hypothetic 20.1 1E+02 0.0022 26.1 2.9 40 147-194 103-142 (158)
465 smart00834 CxxC_CXXC_SSSS Puta 20.1 95 0.0021 19.2 2.1 12 196-207 24-35 (41)
466 COG3898 Uncharacterized membra 20.0 6.5E+02 0.014 25.0 8.4 93 227-335 127-219 (531)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.86 E-value=5.4e-20 Score=184.48 Aligned_cols=285 Identities=27% Similarity=0.420 Sum_probs=216.0
Q ss_pred HHHHHHHHhhhhccccccccCCCC----ceeEEEccccccccCCCccCcEEEEeCCEEEEEEccCCCCCC-eeEEeccCC
Q 017649 63 INEIAENFSKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EVLISYIET 137 (368)
Q Consensus 63 ~~~~~~~~~~~~~N~~~i~~~~~~----~~g~~lyp~~s~~nHsC~PN~~~~~~~~~~~~~a~~~i~~ge-el~~~Y~~~ 137 (368)
...+..++..+..+++.+.+.... .+|.|+||..+++||||.||+...|++....+++...+.+++ +|+++|++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 248 (482)
T KOG2084|consen 169 ADCISKLFPSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDP 248 (482)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeeccc
Confidence 344566777777888887766544 499999999999999999999999999999999999998887 999999999
Q ss_pred CCCHHHHHHHHhcCCCeEeeccccCCcCcCCcchhhhhhhcCccCCCCCccceeecCCC---CccccCCCCCCCCHHHHH
Q 017649 138 AGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDD---KGFTCQQCGLVRSKEEIK 214 (368)
Q Consensus 138 ~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~---~~~~C~~C~~~~~~~~~~ 214 (368)
.+++..|++.|+..|+|.|.|++|.+|+ +...+..+++|..++|.+.+.+.... ..|.|..|........+.
T Consensus 249 ~~~~~~r~~~l~~~~~f~c~c~rc~d~~-----~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 323 (482)
T KOG2084|consen 249 LLSTASRQKQLRQSKLFSCQCPRCLDPT-----ELGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYVV 323 (482)
T ss_pred ccCHHHHHHHHhhccceeeecCCCCCCC-----ccccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHHH
Confidence 9999999999999999999999999864 23456778999999998776654433 489999999988877666
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----------hhhHHHHHHH
Q 017649 215 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----------LEDWKEALAY 284 (368)
Q Consensus 215 ~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----------~g~~~~Al~~ 284 (368)
......... .+ ...+. ....+.+........++.+.........+..++.. ...+..+..+
T Consensus 324 ~~~~~~~~~--~~---~~~~~----~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 394 (482)
T KOG2084|consen 324 ESREELQNE--LL---DAFSD----LLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAELERLLNL 394 (482)
T ss_pred HHHHHHHhh--cc---ccCCh----hhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHh
Confidence 555443321 00 01111 11112222233445666666555444444444432 2345566666
Q ss_pred H--HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649 285 C--QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 361 (368)
Q Consensus 285 ~--~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~ 361 (368)
+ ...+.+++.+.|..++..+...+.++.....+++...+++.......++....+.+++........+.........
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (482)
T KOG2084|consen 395 FECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEEQELEEERSEEGP 473 (482)
T ss_pred hhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhh
Confidence 6 8889999999999999999999999999999898889999999999999999999999888887777666554443
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=9e-13 Score=130.95 Aligned_cols=134 Identities=15% Similarity=0.151 Sum_probs=124.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.....+..+..+|+|++|+.+++.++++..+.+|..|+.+..+...+|.+|+.++++.+|+.++++++.+.+.++|+.||
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 33446677889999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
.+|..+.+||.+|...|++.+|..++++|++|.+..+|..||.+...+..+..+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877666554
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=1.5e-12 Score=129.35 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=126.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.|..+...+++.+|+.+|++++.+.+.++|+.|+.++.++.+|+.+|...|+|++|..+|+++++++++++|..||.++.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 56667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 357 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~ 357 (368)
.+.+++.++...+++++|+.++++|++|+...+|++|+.+..+...|..+..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987753
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.38 E-value=1.6e-12 Score=110.08 Aligned_cols=61 Identities=39% Similarity=0.616 Sum_probs=49.9
Q ss_pred ccccccccCCCCceeEEEccccccccCCCccCcEEEEe----CCEEEEEEccCCCCCCeeEEecc
Q 017649 75 CNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEVLISYI 135 (368)
Q Consensus 75 ~N~~~i~~~~~~~~g~~lyp~~s~~nHsC~PN~~~~~~----~~~~~~~a~~~i~~geel~~~Y~ 135 (368)
..............+.++||.++++||||.|||.+.|+ +..++++|.|+|++||||++||+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 98 SDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp HEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred eeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 33333333444567899999999999999999999998 78999999999999999999996
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.23 E-value=3.2e-11 Score=90.32 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=72.5
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
|+.++.++.+++.+|..+|+|++|++++++++++ .+.+|+.||.++..+.++|.++..+|++++|++++++|++|.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 6788999999999999999999999999999999 8888999999999999999999999999999999999999876
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.08 E-value=8.2e-11 Score=94.50 Aligned_cols=45 Identities=33% Similarity=0.512 Sum_probs=39.7
Q ss_pred EEEccccccccCCCccCcEEEEeCC----EEEEEEccCCCCCCeeEEec
Q 017649 90 TGLYPVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISY 134 (368)
Q Consensus 90 ~~lyp~~s~~nHsC~PN~~~~~~~~----~~~~~a~~~i~~geel~~~Y 134 (368)
..++|.++++||||.||+...+... .+.++|+|+|++||||+++|
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 4478999999999999999876532 59999999999999999998
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.87 E-value=1.8e-09 Score=99.98 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=63.7
Q ss_pred hhccccccccCCCCceeEEEc-cccccccCCCccCcEEEEeC-CEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhc
Q 017649 73 LACNAHTICNSELRPLGTGLY-PVISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 150 (368)
Q Consensus 73 ~~~N~~~i~~~~~~~~g~~ly-p~~s~~nHsC~PN~~~~~~~-~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~ 150 (368)
-..|-|+|.-+....- ..|| -.++++||+|.|||..+-.| +++.|+++|||+||||||.-|++.+.+.
T Consensus 174 ~g~nDFSvmyStRk~c-aqLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG~--------- 243 (453)
T KOG2589|consen 174 GGGNDFSVMYSTRKRC-AQLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFGE--------- 243 (453)
T ss_pred ccCCceeeeeecccch-hhheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccCC---------
Confidence 3467788765543322 3344 35689999999999887777 7899999999999999999999988763
Q ss_pred CCCeEeeccccCCcC
Q 017649 151 QYLFTCTCPRCIKLG 165 (368)
Q Consensus 151 ~~~F~C~C~~C~~~~ 165 (368)
..-.|.|..|...+
T Consensus 244 -~N~~CeC~TCER~g 257 (453)
T KOG2589|consen 244 -NNEECECVTCERRG 257 (453)
T ss_pred -CCceeEEeeccccc
Confidence 23589999999853
No 8
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=2.2e-07 Score=80.14 Aligned_cols=127 Identities=16% Similarity=0.038 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
.......+......|++++|+..+++++.+. +++.....++.+++.++...|++++|+.++++++.+. ..++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~ 108 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQA 108 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHH
Confidence 3445566777778899999999999987752 3444556688999999999999999999999999763 233455
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
+..+|..+..+|..+..+|++++|+..+.+|+.+++...|.+|+.+.++..-+
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~ 161 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL 161 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 66777777788887779999999999999999999999999998776665544
No 9
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=8.8e-07 Score=70.83 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
..+..+..+...|++++|++.+..++.. +|.++....+...++.++...|++++|+.+++.++..+ |.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSP 73 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCC
Confidence 4566677778899999999999888653 45666667778889999999999999999999888643 5677
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 350 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~ 350 (368)
.....++.+|.++..+|++++|+.++.++++. .|+++.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~ 117 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK 117 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence 66777899999999999999999999999886 577777666543
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.44 E-value=1.5e-06 Score=64.69 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHh
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 294 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~ 294 (368)
..+...+..+...|++++|++.+++++.+ ...+++.|+.++.+..+++.++..+|++++|+++++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 34566777788999999999999999999 66789999999999999999999999999999999999998874
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=1.6e-05 Score=66.78 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=90.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.....+..+...|++++|...+..++.. ++.-..++..++.++..+|++++|+..+.+++.. .|.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~- 91 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASH- 91 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC-
Confidence 3445677788999999999999887653 2334567788999999999999999999999863 3444
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
...++++|.++..+|++++|+..+.+|+. ..|+++.+..+........
T Consensus 92 --~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 92 --PEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQIMV 139 (144)
T ss_pred --cHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence 46679999999999999999999999987 4688887776666554443
No 12
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.36 E-value=3.2e-05 Score=65.27 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649 218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 297 (368)
Q Consensus 218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g 297 (368)
+.+..++..|-.+...|++++|.++++.+.. +.|. ...-..+|+.++..+|+|++|++.+.+++. +.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-----~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~ 99 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTI-----YDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IK 99 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cC
Confidence 4566778888889999999999999987643 3333 344577899999999999999999998875 44
Q ss_pred CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649 298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 357 (368)
Q Consensus 298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~ 357 (368)
+++|. .++++|..+...|+.++|++.|+.|+.+.. ++|....+..+.+....
T Consensus 100 ~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 100 IDAPQ---APWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQRAEKMLQ 151 (157)
T ss_pred CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHH
Confidence 67774 479999999999999999999999998763 66777777766555443
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=1e-05 Score=74.35 Aligned_cols=122 Identities=18% Similarity=0.224 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649 218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 297 (368)
Q Consensus 218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g 297 (368)
...+.+-.+..+++..++|++|+..|.+++. |.|.++.+. -+=|.+|.++|.++.|++=|+.++.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyy---cNRAAAy~~Lg~~~~AVkDce~Al~------- 143 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYY---CNRAAAYSKLGEYEDAVKDCESALS------- 143 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHH---HHHHHHHHHhcchHHHHHHHHHHHh-------
Confidence 3445566677778888999999999998876 456676553 4567889999999999999999986
Q ss_pred CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhhh
Q 017649 298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL 363 (368)
Q Consensus 298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~~ 363 (368)
..|.....|-+||.++..+|++++|+..|+||++| -|+.+.++.-+ .-++..+....
T Consensus 144 -iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL---~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 144 -IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNL---KIAEQKLNEPK 200 (304)
T ss_pred -cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHH---HHHHHHhcCCC
Confidence 45777788899999999999999999999999974 56777665544 44444444444
No 14
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.31 E-value=2.7e-06 Score=91.00 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=114.8
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
......+|.+.++.+ .-+.+.....+++.-|+.+...+..|+.++..+|++++|+.+++++.-+.+++.|.+||.+...
T Consensus 939 gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 334456677887877 6666777778888889999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
+.+++...+..+....|...+.+|..+....+|++||.+.-+..+++.+
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence 9999999999999999999999999999999999999998887766665
No 15
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.28 E-value=1e-06 Score=57.11 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=28.8
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 344 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~ 344 (368)
++..+.+||.++..+|++++|+.++++|+.+.+..+|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 457889999999999999999999999999999999999993
No 16
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.25 E-value=1.2e-05 Score=69.56 Aligned_cols=129 Identities=15% Similarity=0.103 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
.......+..+...|++++|+..+++++... +.......+..+++.++...|++++|+.++++++...... +..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 108 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSA 108 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHH
Confidence 3445667777788899999999999887653 2233345678899999999999999999999988753211 122
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 354 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~ 354 (368)
+..+|..+..+|.....++++++|+..+.+|+++++...+.++..+.++..-+..
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 2334555555555555667789999999999999999998888877777766544
No 17
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.22 E-value=1.9e-06 Score=55.75 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
++.++++|+.+|...|++++|+.++++++.++++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 356789999999999999999999999999999999999994
No 18
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.20 E-value=3e-05 Score=71.85 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=91.7
Q ss_pred HHHHHHh-hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 224 SKKTLAL-TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 224 ~~~a~~~-~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
++.|..+ ...|++++|+..|+.++.. +|++.....++..|+.+|...|++++|+.++++++..+ |.||.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~ 215 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPK 215 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcc
Confidence 3334443 4568999999999888764 57777778889999999999999999999988888654 68999
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
....++++|.++..+|++++|...|+++++.+ |+++........|
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL 260 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL 260 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence 99999999999999999999999999887643 4555555555444
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.19 E-value=3.3e-05 Score=74.88 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=87.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
+...|...+..|++++|+..+.+++.+ .|.+ ..++.+++.+|..+|++++|+..+++++... |.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~-- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIELD-----PSL-- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCC--
Confidence 455677788999999999999998864 3444 4567889999999999999999999998742 333
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
+..++.+|.++..+|++++|+..|++|+.+ .|+++.....+..+
T Consensus 70 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~ 113 (356)
T PLN03088 70 -AKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLIKEC 113 (356)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 456889999999999999999999999973 46777665555444
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=8.7e-05 Score=61.00 Aligned_cols=109 Identities=20% Similarity=0.305 Sum_probs=83.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
....+..+...|++++|...+++++.. +|.+ ..+...++.++..+|++++|..++++++.. +|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~ 83 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DPD 83 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCC
Confidence 455666677889999999998887653 3433 456778999999999999999999988764 233
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
....++.+|.++...|++++|+.+++++++. .|+.+....+...+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKERA 128 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHHH
Confidence 4556788999999999999999999999985 35666555555444
No 21
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.09 E-value=6e-05 Score=67.63 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=98.5
Q ss_pred CccccCCCCCCCCHHHH--------HHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHH
Q 017649 197 KGFTCQQCGLVRSKEEI--------KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKL 268 (368)
Q Consensus 197 ~~~~C~~C~~~~~~~~~--------~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~L 268 (368)
..|.|+.||........ +.+...+..... ...+....++++|+..|..++-. ..+.+..+...+.+...+
T Consensus 47 ~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~-~~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~Lrl 124 (214)
T PF09986_consen 47 EVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRWK-PRDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRL 124 (214)
T ss_pred eEEECCCCCCcccccccccCCHHHHHHHHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence 35899999976554433 222222222221 11344445788999988877654 345566677888889999
Q ss_pred HHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC-C----hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 269 IKILMELEDWKEALAYCQLTIPVYQRVYPQF-H----PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 269 a~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~-h----p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
|-+|..+|+-+....+++++++.|+..|-.. . ..-...++-+|.+...+|++++|..++.+.+..-..
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 9999999998888889999999888776522 2 233567888999999999999999999998864433
No 22
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=3.3e-06 Score=84.85 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=41.1
Q ss_pred ceeEEEccccc-cccCCCccCcEE---EEeC-CEEEEEEccCCCCCCeeEEeccCCCCC
Q 017649 87 PLGTGLYPVIS-IINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYIETAGS 140 (368)
Q Consensus 87 ~~g~~lyp~~s-~~nHsC~PN~~~---~~~~-~~~~~~a~~~i~~geel~~~Y~~~~~~ 140 (368)
.|....+-..| ++||||+|||.+ +..| .++=+.|.++|++|||||+.|-....+
T Consensus 184 ~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYG 242 (729)
T KOG4442|consen 184 YIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYG 242 (729)
T ss_pred eecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccccc
Confidence 46667777666 679999999964 3333 356788999999999999999654433
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.04 E-value=2.6e-05 Score=77.77 Aligned_cols=96 Identities=22% Similarity=0.228 Sum_probs=79.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
+..+.|..+.+.|+..+|+..|.+++.+. |+| .+++++|+.+|+++|.+++|..+++++++++ |
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-----p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p 385 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-----PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------P 385 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------h
Confidence 44566777888899999999999888753 333 4578899999999999999999999988754 6
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
..+-...+||.+|-.+|++.+|+..|++|++|
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 67778889999999999999999999998876
No 24
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=98.00 E-value=3e-06 Score=85.33 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=58.9
Q ss_pred cccccccCCCccCcEEEEeCC----EEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeeccccCC
Q 017649 94 PVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIK 163 (368)
Q Consensus 94 p~~s~~nHsC~PN~~~~~~~~----~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~ 163 (368)
....++||||.||+.....+. .+.++|++||.+||||+..|.........+...+...+...|.|.+|..
T Consensus 404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (480)
T COG2940 404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSH 477 (480)
T ss_pred cccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCC
Confidence 345689999999998876543 7889999999999999999988776655566778888999999999986
No 25
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.00 E-value=8.9e-05 Score=67.16 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
...+..+..+...|++++|+..+++++.. .|.++....++..++.++...|++++|+..+++++... |.+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~ 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNH 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCC
Confidence 34566677778899999999999887653 46677777788999999999999999999999988643 466
Q ss_pred hHHHHHHhhhhhHhhhc--------CChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649 301 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELI 349 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~--------g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~ 349 (368)
|.....++.+|.++... |++++|++.+++++.. -|+++...+.+
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~ 155 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAK 155 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHH
Confidence 66666677888887765 7889999999998764 45555444443
No 26
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.00 E-value=0.00023 Score=65.31 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.....|......|++++|+..++.++. .+|..+....+...|+.++...+++++|+.++++.+..+ |.||
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~ 103 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP 103 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCC
Confidence 456677788889999999999998876 356677777888899999999999999999999998755 7899
Q ss_pred HHHHHHhhhhhHhhhcC---------------ChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649 302 LLGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g---------------~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~ 360 (368)
.+...++.+|..+..++ +...+.+.+..--++++.- |++++..+....|..+...|.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHH
Confidence 99999999998764443 1122222222222233333 577888888887777755443
No 27
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.94 E-value=0.00016 Score=59.98 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.+...|...+..|+|.+|++.++.+... +|.....-++...|+.+|...++|++|+.-+++.+. +-|.||
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCC
Confidence 4667777888999999999998887653 466777778899999999999999999999888876 457999
Q ss_pred HHHHHHhhhhhHhhhcCC
Q 017649 302 LLGLQYYTCGKLEWFLGD 319 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~ 319 (368)
.+..+++..|..+..+..
T Consensus 82 ~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CccHHHHHHHHHHHHHhh
Confidence 999999999988887765
No 28
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.94 E-value=0.00056 Score=60.88 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
...+...|...+..|++.+|+..++.+... .|.++....+...++.++...|+|.+|+..+++.+..+ |.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 356778888899999999999999988764 57788888999999999999999999999988888654 57
Q ss_pred ChHHHHHHhhhhhHhhhcCC-----------hHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649 300 HPLLGLQYYTCGKLEWFLGD-----------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~-----------~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~ 360 (368)
||.+...++.+|..+..+.+ ..+|...+++.++ -=|+++++.+...+|..+...+.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~-----~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK-----RYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH-----H-TTSTTHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH-----HCcCchHHHHHHHHHHHHHHHHH
Confidence 89998999999988765431 2234444333332 23788999988888887765544
No 29
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.90 E-value=8.3e-05 Score=56.19 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=60.0
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhh
Q 017649 233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 312 (368)
Q Consensus 233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 312 (368)
+|++++|+..+++++..... ++ -......+|.+|..+|+|++|+.++++ +..- +.++ ...+.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~~---~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSNP---DIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCHH---HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCCH---HHHHHHHH
Confidence 57899999999998875421 22 223455689999999999999999888 2211 2333 33345599
Q ss_pred HhhhcCChHHHHHHHHHH
Q 017649 313 LEWFLGDTENAIKSMTEA 330 (368)
Q Consensus 313 l~~~~g~~~eA~~~l~kA 330 (368)
.+..+|++++|++.|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999986
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.86 E-value=0.00013 Score=72.97 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 298 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~ 298 (368)
..+++.+.+....++|++++|..+|++++.. .+....+.++|+.+|-.+|++++|+..++.++.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------- 417 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------- 417 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-------
Confidence 3456667777788888999999998888764 3456777888999998899999998888888753
Q ss_pred CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649 299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
.|..+.++.++|..|-.+|+..+|+..|.+|+.+ .|.+.+.-.+|+.+.
T Consensus 418 -~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 418 -KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIY 466 (966)
T ss_pred -CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHh
Confidence 4667777788888887888888888887777764 344445555554443
No 31
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00026 Score=59.35 Aligned_cols=95 Identities=20% Similarity=0.129 Sum_probs=64.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
.+..|..+...|++++|...++.++... ++......++..|+.++...|++++|+..+.. .+..+.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~ 116 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAF 116 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcch
Confidence 3445666777888888888888776531 22222334556688888888888888777644 122333
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAV 331 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl 331 (368)
.+.....+|.++...|++++|+..|++|+
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44556677888888888888888888774
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=0.00014 Score=52.45 Aligned_cols=63 Identities=29% Similarity=0.442 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcC-ChHHHHHHHHHHHHh
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI 333 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~kAl~i 333 (368)
.+...+|..+...|+|++|+.++.++++. +|.-...++++|.++..+| ++.+|+..+++|+++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678899999999999999999999985 2444457899999999999 799999999999875
No 33
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=97.77 E-value=1.9e-05 Score=84.30 Aligned_cols=42 Identities=31% Similarity=0.507 Sum_probs=34.9
Q ss_pred cccccCCCccCcEEE---EeC-CEEEEEEccCCCCCCeeEEeccCC
Q 017649 96 ISIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEVLISYIET 137 (368)
Q Consensus 96 ~s~~nHsC~PN~~~~---~~~-~~~~~~a~~~i~~geel~~~Y~~~ 137 (368)
+.+|||||.|||... .+| .++++.|.|+|.+|||||-.|-..
T Consensus 940 Ar~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~ 985 (1005)
T KOG1080|consen 940 ARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFP 985 (1005)
T ss_pred hheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccc
Confidence 568999999999653 344 479999999999999999999543
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.72 E-value=0.00078 Score=59.37 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=47.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
..+..+...|++++|+..+++++.. +|.+ ..+...++.++...|++++|++++++++.. .+.++
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~--- 99 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEH-----DPDD---YLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNG--- 99 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---
Confidence 3444455566666666666655432 1222 234445566666666666666666655542 11222
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
..++++|.++...|++++|+.++.++++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2344555555555555555555555554
No 35
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0012 Score=61.80 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=91.6
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
|..+...+++++|...|.++.....+ .+ +.......+...+.+|... ++.+|+.++++++++|... ......+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~-~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~ 116 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEK-LG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKC 116 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHH
Confidence 33455778999999999999887665 22 2345567777888887666 9999999999999999633 455566889
Q ss_pred HhhhhhHhhhc-CChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649 307 YYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 358 (368)
Q Consensus 307 l~~La~l~~~~-g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e 358 (368)
+.++|.++... |++++|+.+|++|.++++..- ..-...+...++..+..+
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999873 222345566666655443
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00042 Score=61.72 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
...+..+..+..+|++..|.+.++++++. ++....+...+|.+|...|+-+.|-+.+++++. .+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--------l~ 99 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--------LA 99 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--------cC
Confidence 34455667788889999998888888764 344455666788888888888888888888775 45
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
|.-|-.++|.|-.++.+|++++|..+|.+|+.
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 66666777777777777777777777777664
No 37
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.69 E-value=0.00079 Score=54.66 Aligned_cols=100 Identities=20% Similarity=0.195 Sum_probs=76.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
.++.|..+...|+.++|+.+|++++.. +.......++.-.++..+..+|++++|+.+.+..+. -+|.+. .
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~-~ 73 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDE-L 73 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc-c
Confidence 466777888999999999999998763 333445567788899999999999999999988764 234322 2
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
-+.....++..+..+|+.+||+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222334477788999999999999888774
No 38
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00061 Score=50.20 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=71.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
..+..+...|++++|+..++.++.. .|.+. .+...++.++...+++++|++++.+++... +.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~--- 68 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-----DPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA--- 68 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---
Confidence 4455566788999999998887654 23232 556789999999999999999998887642 2333
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
..++.+|.++...|++++|..++.+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 56788999999999999999999998764
No 39
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.002 Score=61.80 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhh--cccCCccc-----cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQK--KLYHPFSV-----NLMQTREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~--~~l~~~h~-----~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
.......+.+..++..|+|..|...|++++.... ....+.-. ....++.|||.++..+++|.+|+.+|.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4444555667788899999999999999877532 22222211 2235778999999999999999999999987
Q ss_pred hHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 291 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 291 ~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
..+.|+ ..+|+=|+++..+|+++.|+..|++|+++
T Consensus 286 -----~~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 286 -----LDPNNV---KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred -----cCCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 345554 67899999999999999999999999973
No 40
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.56 E-value=0.00041 Score=49.44 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.++..+...|+|++|++.+++++.. +|.-...++.+|.++..+|++++|+.++++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4788899999999999999998863 3667788899999999999999999999999864
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.54 E-value=0.00095 Score=63.01 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
...+..+..+...|++++|+..+.+++++ .|+ ...++.+++.++...|++++|++.++++++. .|++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~ 131 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL-----RPD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTY 131 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC
Confidence 34556677778889999999999888764 344 3567889999999999999999999998863 2333
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
...+.++|.++...|++++|+..+++++++
T Consensus 132 ---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 132 ---NYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999999873
No 42
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.51 E-value=0.00091 Score=72.24 Aligned_cols=121 Identities=17% Similarity=0.082 Sum_probs=107.7
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 311 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La 311 (368)
...+...|...+.+++.+..-.+++.||.++.+..++..++...++++.|+++.+.++...++++|+.+..++..+..+|
T Consensus 1027 ~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a 1106 (1236)
T KOG1839|consen 1027 AVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALA 1106 (1236)
T ss_pred hccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHH
Confidence 33345556666667776666678999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 312 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
.+....+.+..|..+.+.++.|+...+|++|+.+++...-+
T Consensus 1107 ~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1107 RLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred HHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence 99999999999999999999999999999999998876554
No 43
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.0008 Score=61.53 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=87.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
+++.|-.+...|+|.+|...|...+.. .|+...+..++..|++++..+|+|+.|...+..++..| |.||-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 566677778889999999999887764 57888999999999999999999999999988887744 57787
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.--.+++||.+...+|+.++|...|++..+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 778899999999999999999999998775
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.50 E-value=0.0031 Score=55.50 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=67.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.+..+...|++++|++.+++++.. +.++........++.++...|++++|..++.+++... +.++ .
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~---~ 170 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----PQRP---E 170 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCh---H
Confidence 344455677888888887777642 1122334456678888888889998888888877632 2333 3
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.+..+|.++...|++++|+.++++++++
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888999999999999999998886
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.48 E-value=0.0049 Score=55.66 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=86.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh--------hhHHHHHHHHHhhhhhHHh
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQR 294 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~--------g~~~~Al~~~~~~l~~~e~ 294 (368)
....+..+...|++++|+..++++++. .|+++....+...++.++... |++++|++.+++++..+
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 145 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-- 145 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--
Confidence 355667778889999999999988764 466777666777888888765 88999999988887542
Q ss_pred hcCCCChHHH--------------HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649 295 VYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 358 (368)
Q Consensus 295 ~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e 358 (368)
|.++... .....+|.++...|++.+|+..++++++.. |++|...+....+..+...
T Consensus 146 ---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 146 ---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLK 215 (235)
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHH
Confidence 2333221 123467888999999999999999998753 3346555555555555443
No 46
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.44 E-value=0.0085 Score=50.11 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
....+..+......++...+...++.+... +|+.+.-..+.-.++..+...|++++|...++.++.. .++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d 80 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD 80 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC
Confidence 344455555555678888777666665542 4556566677888999999999999999999988872 245
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
.....+..+.||.++..+|++++|+..+.+
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566678889999999999999999999855
No 47
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.00043 Score=50.45 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=58.1
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649 268 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 347 (368)
Q Consensus 268 La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~ 347 (368)
|..+|...++|++|++++++++.. +|.-...++..|.++..+|++.+|+..+.++++ .+|+++....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~-----~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALE-----LSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH-----HCCCcHHHHH
Confidence 456789999999999999998874 344446678899999999999999999999994 5667777666
Q ss_pred HHHHH
Q 017649 348 LILKL 352 (368)
Q Consensus 348 l~~~L 352 (368)
+..+|
T Consensus 68 ~~a~l 72 (73)
T PF13371_consen 68 LRAML 72 (73)
T ss_pred HHHhc
Confidence 66554
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.37 E-value=0.0025 Score=66.40 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=48.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
..+..+...|++++|+..+++++.. .|+++ .++..++.++...|++++|+.+++++++.. |...
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~ 433 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKL-----NSEDP---DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFI 433 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCH
Confidence 3444455566666666666665443 23332 344556666666666666666666665431 1222
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
..+.++|.++..+|++++|+..+++|+.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2344455555555555555555555443
No 49
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.0025 Score=59.71 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=81.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
..|......+++++|+..++++..+.... ......+.+...++.+|... |++++|+++++++++.|+.-- .....
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a 154 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSA 154 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhH
Confidence 34455556669999999999998876431 22334578889999999998 999999999999999998542 33334
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
...+.++|.++..+|+|++|++.|++.......
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 567779999999999999999999998875543
No 50
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.33 E-value=0.0029 Score=65.91 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=75.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
..+..+...|++++|+..+++++.+ ++....++..++.++..+|++++|+.+++++++. .|.++
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~--- 399 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP--- 399 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---
Confidence 3444556789999999999988764 2334556778899999999999999999998764 34454
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
..++.+|.++...|++++|+..+++|+++
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45788999999999999999999999875
No 51
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.32 E-value=0.0069 Score=50.55 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc--------------cccHHHHHHHHHHHHHhhhhHHHHHHHH
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------------SVNLMQTREKLIKILMELEDWKEALAYC 285 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~--------------h~~l~~~~~~La~~~~~~g~~~~Al~~~ 285 (368)
+..+...+......|+...++..+++++.+.+.-+-+. +...+.+...++..+...|++++|+.++
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34444455555566788888888888888765432222 1122345566777778889999999999
Q ss_pred HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC-CchHHHHHHH
Q 017649 286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILK 351 (368)
Q Consensus 286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~-hp~~~~l~~~ 351 (368)
++++... |.--..+..+-.++...|+..+|+..|++..+.+...+|-+ +|.+..+...
T Consensus 86 ~~~l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 86 QRALALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 9988632 22223445566778899999999999999999999999976 4455555443
No 52
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.32 E-value=0.00091 Score=65.49 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=64.7
Q ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 257 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 257 ~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.++....++.+++.+|..+|+|++|+..+++++++ .|+++.....++++|.+|..+|++++|+..|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36677788999999999999999999999999985 4677776678999999999999999999999999996
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.29 E-value=0.0021 Score=50.89 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 342 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h 342 (368)
++...++..+...|++++|++++.+++.. .|.++.....++.+|.++...|++.+|+.++++++... |++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 34567888899999999999999988753 24666667788999999999999999999999998643 566
Q ss_pred chHHHHHHHHHHHH
Q 017649 343 PFMKELILKLEEAQ 356 (368)
Q Consensus 343 p~~~~l~~~L~~~~ 356 (368)
+.+..+...+..+.
T Consensus 73 ~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 73 PKAPDALLKLGMSL 86 (119)
T ss_pred CcccHHHHHHHHHH
Confidence 55545455544443
No 54
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0017 Score=55.79 Aligned_cols=68 Identities=15% Similarity=-0.024 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
-...+..++.++...|++++|+..+++++.+. +.++..+..+.++|.++...|++++|+..+++|+.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566778889999999999999999998762 456677789999999999999999999999999987
No 55
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.25 E-value=0.0081 Score=53.27 Aligned_cols=112 Identities=7% Similarity=0.017 Sum_probs=79.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH-Hhhhh--HHHHHHHHHhhhhhHHhhcCCCC
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELED--WKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~-~~~g~--~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
...+..+...|++++|+..+++++++ .|+++ .++..++.++ ...|+ .++|.+.+++++.. .|.+
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~ 143 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQL-----RGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE 143 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC
Confidence 34455677889999999999988764 35444 4456778764 56677 58999998888862 2444
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
+ ..++.+|..+...|++++|+.+++++++.. +++.+...-+ ..++.++
T Consensus 144 ~---~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~~~i-~~i~~a~ 191 (198)
T PRK10370 144 V---TALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRTQLV-ESINMAK 191 (198)
T ss_pred h---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHHHHH-HHHHHHH
Confidence 4 567999999999999999999999998754 3444443333 5554443
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.21 E-value=0.0075 Score=58.62 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=61.5
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC-hHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PLL 303 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h-p~~ 303 (368)
-.+......|++++|+..+++++.. .|.+ ..+...++.++...|++++|+.++++++. .|... ...
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~ 106 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKV-----DPET---VELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTREQR 106 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCHHHH
Confidence 3344455667777787777776653 2332 34566677777777888888777776654 12222 223
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
...+..+|.++...|++++|+.++.++++.
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 456677777777777777777777777653
No 57
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.21 E-value=0.013 Score=53.23 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
..+.+++......|++.+|++.++.+.. -||..+..-++.-.++.++...+++++|+.+..+.+. .| |.|
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~----ly-P~~ 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR----LY-PTH 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hC-CCC
Confidence 3466667777788999999999988763 4777777788888999999999999999998777665 33 588
Q ss_pred hHHHHHHhhhhhHhhhc-----CChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649 301 PLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 361 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~-----g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~ 361 (368)
|.....++-.|..+... .+...+...+....+.+.+- |+++++.+...++..+...|-.
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAG 168 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHH
Confidence 99888888887776543 23344455555555555555 7888998888888776654443
No 58
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.18 E-value=0.0087 Score=58.17 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=43.3
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC-CChHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-FHPLLGL 305 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~-~hp~~~~ 305 (368)
+..+...|++++|+..+++++.. ++....++..++.++...|+|++|++.+++++... |. .+...+.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~ 181 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAH 181 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHH
Confidence 33444555555555555554332 11122334455555555555555555555444321 11 1112233
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.+..+|.++...|++++|+.+++++++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 344455555555555555555555544
No 59
>PRK15331 chaperone protein SicA; Provisional
Probab=97.16 E-value=0.011 Score=50.33 Aligned_cols=107 Identities=9% Similarity=0.151 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 298 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~ 298 (368)
.+..+...|-.+..+|++++|..+|+-+- ++.+.++.. ...|+.++..+++|++|+..+..+... ..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~ 102 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTL-----LK 102 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHc-----cc
Confidence 55667778888999999999999987543 355555544 467999999999999999988776543 23
Q ss_pred CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649 299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 347 (368)
Q Consensus 299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~ 347 (368)
++|.. .+..|.-+..+|+..+|+..|+.|++ .++|+.+++
T Consensus 103 ~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~------~~~~~~l~~ 142 (165)
T PRK15331 103 NDYRP---VFFTGQCQLLMRKAAKARQCFELVNE------RTEDESLRA 142 (165)
T ss_pred CCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh------CcchHHHHH
Confidence 44432 57789999999999999999999988 355655544
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.16 E-value=0.0039 Score=53.76 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=60.5
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
++.-...+..++..+...|++++|+.++++++... +.++..+..+..+|.++..+|++++|+..+.+|+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556678889999999999999999999998753 344455678899999999999999999999999986
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.16 E-value=0.0057 Score=64.21 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
..+...|....+.|.+++|..+++.++.+ .|....++.+++.++...+++++|+..+++++.. .
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~ 150 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------G 150 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------C
Confidence 33444556667778888888888777653 2334455667777777777777777776666542 2
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
|.-+..++.+|.++..+|++++|+..|++++.
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 33334556666666667777777777766664
No 62
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.14 E-value=0.0017 Score=46.22 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=47.7
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
..|..+...|++++|+..++.+++. ++.-..++..++.++..+|++++|+.+++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3466678899999999999988653 2445667888999999999999999999998864
No 63
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.08 E-value=0.0097 Score=62.51 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=75.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
....+..+...|++++|+..+++++.+ .|.++ .+...++.++...|++++|+..+++++.. .|.++
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~-----~P~~~- 352 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE-----KGVTS- 352 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cccch-
Confidence 344566667778888888888777653 34443 34566888888888888888887776652 23332
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 357 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~ 357 (368)
.....+|.++...|++++|+..|++++++--..+. +.+.+....+.+...
T Consensus 353 --~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 353 --KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQIS 402 (656)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHH
Confidence 33445577788888888888888888876544432 223344445544433
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.08 E-value=0.0087 Score=65.32 Aligned_cols=93 Identities=12% Similarity=0.016 Sum_probs=61.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.+..+...|++++|+..+++++.+ .|+++ .++.+++.++...|++++|++++++++.. .|+++ .
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~---~ 678 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDP---A 678 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---H
Confidence 344455556666666666665543 34443 45667777777777777777777777652 23444 4
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
.++++|.++..+|++++|+..+++|+++-
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56788888888888888888888887644
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.00 E-value=0.0054 Score=64.42 Aligned_cols=99 Identities=9% Similarity=-0.077 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
.+...+.+..+...+++++|+..+++++.. .+.-...+..++.++..+|++++|.+++++++. .
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~ 183 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------Q 183 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------c
Confidence 345566777888889999999998887753 344456678899999999999999999998875 3
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
||.-...+..+|.++...|+.++|...|++|++..
T Consensus 184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45555677889999999999999999999999753
No 66
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.0061 Score=43.73 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV 291 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~ 291 (368)
.....+..+...|++++|+..+++++.. .|++ ..++.+++.++..+| ++++|+++++++++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3456677788999999999999998875 3444 457889999999999 899999999998864
No 67
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.027 Score=49.38 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649 217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 296 (368)
Q Consensus 217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~ 296 (368)
..++..+......++..|+|++|.+.|..++.++-...- -...-++.+-+.+.+.++.|+.|+.-|.++|++.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---- 164 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIELN---- 164 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC----
Confidence 345556666777888999999999999999887532111 1122345667778899999999999999999743
Q ss_pred CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
|..-.++..=|.+|-...++++|+.-|++.+++
T Consensus 165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 445555667788999999999999999887763
No 68
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.97 E-value=0.0068 Score=64.56 Aligned_cols=103 Identities=18% Similarity=0.042 Sum_probs=75.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh-----------
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------- 291 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~----------- 291 (368)
+...+..+..+|++++|+..+++++.. .|. ...++..++.++...|+|++|+.++++++..
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 96 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQK-----DPN---DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL 96 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence 455566677888999999888887753 233 3456777888899999999998888876542
Q ss_pred ----------------HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 292 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 292 ----------------~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
+....+...+..+..+..+|..+...|++++|+..|++++++
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 122223455666677788888888889999999998888764
No 69
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=96.93 E-value=0.00058 Score=66.39 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=38.8
Q ss_pred EEEccccc-cccCCCccCcEEE--EeCC------EEEEEEccCCCCCCeeEEeccCCCC
Q 017649 90 TGLYPVIS-IINHSCLPNAVLV--FEGR------LAVVRAVQHVPKGAEVLISYIETAG 139 (368)
Q Consensus 90 ~~lyp~~s-~~nHsC~PN~~~~--~~~~------~~~~~a~~~i~~geel~~~Y~~~~~ 139 (368)
...+...+ ++||||.||+.+. |.+. .+.+.|+++|++|+|+|..|+....
T Consensus 266 a~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 266 AKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred hhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence 34445544 7799999999775 3332 4688999999999999999997765
No 70
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0026 Score=45.55 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=48.8
Q ss_pred HhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649 273 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 351 (368)
Q Consensus 273 ~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~ 351 (368)
+..|+|++|++++++++... |.++ ...+.+|.++...|++++|...+.++.. ..|++|.+..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-----p~~~---~~~~~la~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-----PDNP---EARLLLAQCYLKQGQYDEAEELLERLLK-----QDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-----TTSH---HHHHHHHHHHHHTT-HHHHHHHHHCCHG-----GGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCcCHHHHHHHHhc
Confidence 56799999999999988642 2333 4457899999999999999999888775 23445666665544
No 71
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.85 E-value=0.015 Score=61.05 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=69.2
Q ss_pred HHHHHhhhcCChHH----HHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 225 KKTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 225 ~~a~~~~~~g~~~e----A~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
..+..+...|++++ |+..+++++.. .|+ ...++..++.++...|++++|+.++++++.. .|.+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~ 317 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSD---NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDL 317 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC
Confidence 34555667778775 67777776653 243 3466778899999999999999998888863 3444
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
+ .....+|.++...|++++|+..+++++..
T Consensus 318 ~---~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 318 P---YVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred H---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 44667899999999999999999888874
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.82 E-value=0.01 Score=56.99 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=73.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.+..+...|++++|...+++++.+ .|.+ ..+...++.++...|++++|+.++++.+..... .......
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~ 187 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGH 187 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHH
Confidence 344556889999999999988764 3434 345677899999999999999999998875532 2222345
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.+..+|.++..+|++++|+..++++..
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 677899999999999999999999853
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.036 Score=51.97 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP- 297 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g- 297 (368)
.+..+.+.+..++..|=++.|..+|..+... -..--.++..|..+|-...+|++|++..++.... -|
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q 173 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQ 173 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCc
Confidence 4455666677777777777777776654331 1123457788888998889999998887765532 22
Q ss_pred CCChHHHHHHhhhhhHhhhcCChHHHHH---------------------------HHHHHHHhhccccCCCCchHHHHHH
Q 017649 298 QFHPLLGLQYYTCGKLEWFLGDTENAIK---------------------------SMTEAVEILRITHGTNSPFMKELIL 350 (368)
Q Consensus 298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~---------------------------~l~kAl~i~~~~~G~~hp~~~~l~~ 350 (368)
++...++.-+=+||..+....+.+.|+. .+.+|++.++...-.++.++.++..
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 3344455555555554443333333333 3444555556666678889999999
Q ss_pred HHHHHHHHHhhhh
Q 017649 351 KLEEAQAEASYKL 363 (368)
Q Consensus 351 ~L~~~~~el~~~~ 363 (368)
+|..+..++.+..
T Consensus 254 ~L~~~Y~~lg~~~ 266 (389)
T COG2956 254 MLYECYAQLGKPA 266 (389)
T ss_pred HHHHHHHHhCCHH
Confidence 9999988776543
No 74
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.74 E-value=0.024 Score=61.70 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=87.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
+......|++++|...+++++..... .++.+. ...+...++.++...|++++|..+++++++..+...++.++..+..
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~-~g~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQ-HDVYHY-ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhh-hcchHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 33456788999999999888876554 333333 3456788999999999999999999999999888766677766666
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
+..+|.+++..|++++|...+.+++.+.+..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 7788999999999999999999999987743
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.66 E-value=0.0092 Score=53.32 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=76.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.|..+...|..+.|.+.|++++.+ +|.+ ..+++|-+.-+..+|++++|..++++++. -|.-+....
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~ 140 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSL-----APNN---GDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSD 140 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhc-----CCCc---cchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcch
Confidence 455567888889999999988764 4444 44577888888889999999999888775 456667777
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
.+-|+|.....+|+...|+.+|++|+++.
T Consensus 141 t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 141 TLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 88999999999999999999999998754
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=96.65 E-value=0.026 Score=58.07 Aligned_cols=91 Identities=15% Similarity=0.012 Sum_probs=55.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.+..+...|++++|+..+++++++ .|+++ .++..++.++...|++++|+.++++++.. .|.++..
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~~~-- 408 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLL-----SPISA---DIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTRAAA-- 408 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChhh--
Confidence 344455667788888887777653 34443 34566777788888888888887777653 2333322
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.+.++.++...|++++|+..+++++.
T Consensus 409 -~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 409 -GITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred -HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 12233344456677777776666653
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.027 Score=56.23 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=78.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
.+..+.|.+|...++.++.....++ +..+...-+..+|+.+|..++.+++|+.++++++... |.-...+-.
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~as 494 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHAS 494 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHH
Confidence 3345578899999988875443333 3333556678899999999999999999999998632 222344567
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649 310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 350 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~ 350 (368)
+|-++..+|.++.|+++|.||+.+ -|+...+.+++.
T Consensus 495 ig~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK 530 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence 788899999999999999999964 345555555443
No 78
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.61 E-value=0.026 Score=45.79 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+...++.++-.+|+.++|+.++++++. .|...+...-.+..+|..+..+|++++|+..+++++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788889999999999999999987 4666666677888999999999999999999999875
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=96.59 E-value=0.0089 Score=61.50 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhH
Q 017649 234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 313 (368)
Q Consensus 234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l 313 (368)
+++++|...+++++++ .|+++ .++..++.++...|++++|+.++++++.. .|+++. .++.+|.+
T Consensus 318 ~~~~~A~~~~~~Al~l-----dP~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~---a~~~lg~~ 381 (553)
T PRK12370 318 NAMIKAKEHAIKATEL-----DHNNP---QALGLLGLINTIHSEYIVGSLLFKQANLL-----SPISAD---IKYYYGWN 381 (553)
T ss_pred hHHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH
Confidence 3467777777776653 45444 45667888999999999999999999873 455554 56888999
Q ss_pred hhhcCChHHHHHHHHHHHHh
Q 017649 314 EWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 314 ~~~~g~~~eA~~~l~kAl~i 333 (368)
+...|++++|+..+++|+++
T Consensus 382 l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999875
No 80
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.56 E-value=0.058 Score=52.16 Aligned_cols=129 Identities=16% Similarity=0.044 Sum_probs=98.1
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
..-.|+++.|++.|+..+.+... ++.. ..-++.-+.|+..|.-+.++.+|+.|..+-+.+.+.+- +-.--+-+++.
T Consensus 245 hiflg~fe~A~ehYK~tl~LAie-lg~r-~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~RacwS 320 (639)
T KOG1130|consen 245 HIFLGNFELAIEHYKLTLNLAIE-LGNR-TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACWS 320 (639)
T ss_pred hhhhcccHhHHHHHHHHHHHHHH-hcch-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHH
Confidence 34457899999999988776433 3332 23356678899999999999999999999888877552 22234568899
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 017649 310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 364 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~~~ 364 (368)
||..+..+|..+.|+.+.++++++......+.-..| ...+|.+..+++.++.|
T Consensus 321 Lgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT--ar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 321 LGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT--ARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh--hhhhhHHHHHHhCCCcc
Confidence 999999999999999999999998887765554443 24467778888888776
No 81
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.53 E-value=0.031 Score=61.08 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=71.9
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 311 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La 311 (368)
..|++++|+..+++++.. .| . ..++.+++.++..+|++++|+..+++++.. .|+++ ..++++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l-----~P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG 650 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI-----AP---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALG 650 (987)
T ss_pred hCCCHHHHHHHHHHHHHh-----CC---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Confidence 447888888888777653 23 2 456778899999999999999999888763 34555 5678999
Q ss_pred hHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649 312 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 347 (368)
Q Consensus 312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~ 347 (368)
.++...|++++|+..+++|+++ .|+++....
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~ 681 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG-----LPDDPALIR 681 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 9999999999999999999874 566664443
No 82
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.40 E-value=0.16 Score=40.90 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=77.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-----cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-----NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-----~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
.+++....|-|++|..-++++....+.+ ++.-. .=.-++..|+.++..+|+|++++.-..+++-.+.+. |.-|
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srti-P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~ 92 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTI-PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELH 92 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS--TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccC-ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccc
Confidence 4555667788999999999988875443 33211 123356678899999999999999999888776554 6677
Q ss_pred hHHHHH----HhhhhhHhhhcCChHHHHHHHHHHHHhhccccCC
Q 017649 301 PLLGLQ----YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 340 (368)
Q Consensus 301 p~~~~~----l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~ 340 (368)
-.-|.. .++=|..+..+|+.++|++.|+.|-+.+.-.-|.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 666543 3455777888999999999999999987665553
No 83
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.37 E-value=0.03 Score=62.75 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=74.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-----------HHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-----------MQTREKLIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l-----------~~~~~~La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
....+..+...|++++|+..++++++.. |.+... ......++.++...|++++|+.++++++..
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455667778899999999999987653 222211 112234577788899999999999999875
Q ss_pred HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 292 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 292 ~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
. |.+ ...++.||.++..+|++++|+..|++|+++
T Consensus 381 ----~-P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 381 ----D-NTD---SYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred ----C-CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 233 356788999999999999999999999975
No 84
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.36 E-value=0.0018 Score=66.47 Aligned_cols=56 Identities=29% Similarity=0.438 Sum_probs=40.6
Q ss_pred cccccCCCccCcEE--EEeCC------EEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeecc
Q 017649 96 ISIINHSCLPNAVL--VFEGR------LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP 159 (368)
Q Consensus 96 ~s~~nHsC~PN~~~--~~~~~------~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~ 159 (368)
+.++||||+||..+ +|.+. .+.+.+.+-|++|+|||-.|........ .+-..|.|.
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~--------~keL~C~CG 1253 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVA--------TKELTCHCG 1253 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccc--------cceEEEecC
Confidence 35789999999976 45432 3567789999999999999975543332 334678774
No 85
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=96.35 E-value=0.0028 Score=66.88 Aligned_cols=39 Identities=36% Similarity=0.609 Sum_probs=32.1
Q ss_pred ccccCCCccCcEE---EEeC-CEEEEEEccCCCCCCeeEEecc
Q 017649 97 SIINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYI 135 (368)
Q Consensus 97 s~~nHsC~PN~~~---~~~~-~~~~~~a~~~i~~geel~~~Y~ 135 (368)
-.+||||.|||.. ..+| -++.|.|+|||++||||+..|-
T Consensus 1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecc
Confidence 3669999999954 3344 3788999999999999999983
No 86
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.33 E-value=0.011 Score=42.12 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=42.5
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 292 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~ 292 (368)
...|++++|+..+++++.. .|++ ..++..++.+|...|++++|..++.+++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-----NPDN---PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-----TTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4678999999999998764 3433 4556789999999999999999998887643
No 87
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.28 E-value=0.055 Score=57.61 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
.+...++.+|...|++++|+.+++++++
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455666666667777777776666654
No 88
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.20 E-value=0.018 Score=55.56 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=79.4
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 310 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L 310 (368)
+--|+|++|+...+.-+.+.+. +|. ....-++..+|+.+++-+|+|+.|.+++++++.....+ .+-.+-+...|.|
T Consensus 206 YlLGdf~~ai~~H~~RL~ia~e-fGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSL 281 (639)
T KOG1130|consen 206 YLLGDFDQAIHFHKLRLEIAQE-FGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSL 281 (639)
T ss_pred eeeccHHHHHHHHHHHHHHHHH-hhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHh
Confidence 3447899999888776666433 443 33445778899999999999999999999998766544 3445567888999
Q ss_pred hhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 311 GKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 311 a~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
|..|.-+.+++.|+.|..+-+.|.+
T Consensus 282 gNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 282 GNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999777654
No 89
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.17 E-value=0.042 Score=50.94 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHHHHH-HHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc
Q 017649 265 REKLIKI-LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 343 (368)
Q Consensus 265 ~~~La~~-~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp 343 (368)
....+.. +...|+|++|+..++..+..+ |+++.....++.+|.++...|++++|+..|++++..+ |+||
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~ 214 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSP 214 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCc
Confidence 3344443 356799999999988887655 4677777889999999999999999999999988644 6788
Q ss_pred hHHHHHHHHHHHHHH
Q 017649 344 FMKELILKLEEAQAE 358 (368)
Q Consensus 344 ~~~~l~~~L~~~~~e 358 (368)
...+.+-++..+..+
T Consensus 215 ~~~dAl~klg~~~~~ 229 (263)
T PRK10803 215 KAADAMFKVGVIMQD 229 (263)
T ss_pred chhHHHHHHHHHHHH
Confidence 888877777665543
No 90
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.079 Score=51.23 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649 218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 296 (368)
Q Consensus 218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~ 296 (368)
..++..-+.+...+.+|++.+|-+.|..++.+ .|+|. ....++.+.+.+...+|+..+|+.-|..++.+
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----- 316 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----- 316 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-----
Confidence 34445556677788999999999999888764 45555 44577889999999999999999999998864
Q ss_pred CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649 297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
.+.+...+..-|..+..++++++|+..+++|++.-.- -..+..+++....|...
T Consensus 317 ---D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 317 ---DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKS 370 (486)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHh
Confidence 4677788888899999999999999999999985443 22344455555555443
No 91
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.14 E-value=0.094 Score=56.20 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=73.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
....|..+...|++++|+..+++++.. .|.++. +...++.++...|++++|+.++++++.. .|.++.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~ 118 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN 118 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH
Confidence 344556677889999999999988764 344433 3457888999999999999999888764 244444
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
++.+|.++...|++++|+..+++|+++
T Consensus 119 ----~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 119 ----LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred ----HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 677899999999999999999998873
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.048 Score=49.57 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=72.5
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.+...+..|++.+|+..++++.. +.|++. ++++.++.+|...|++++|-.-+.++++.. +..|..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~-----l~p~d~---~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p~~-- 170 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR-----LAPTDW---EAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEPSI-- 170 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc-----cCCCCh---hhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCchh--
Confidence 34456788999999999888754 345454 457789999999999999998888888743 455644
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+.|||.++.-.|+++.|++++.+|..
T Consensus 171 -~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 171 -ANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred -hhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 58999999999999999999998763
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.06 E-value=0.037 Score=62.07 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 289 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l 289 (368)
.+..+...|++++|+..+++++.. .|.++ .++..++.+|...|++++|++++++++
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~-----~P~~~---~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTR-----EPGNA---DARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 344455666777777777666543 23332 345566666666666666666655443
No 94
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.01 E-value=0.0046 Score=62.55 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.+++.|+.+|.+++.++.|.-++++++++ .|.=.+.+-.+|.++...|+.++|+.++++|..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 45666666666777777776666666653 233334455667777777777777777777764
No 95
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.00 E-value=0.045 Score=50.91 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=70.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
...|......|+.++|+..++++++. .|.++.+ +..++.+++..|+++++.+......... +.+|.+
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~ 216 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL 216 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH
Confidence 34555567889999999999998874 4555554 5668888899999998766655544332 344433
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHH
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK 346 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~ 346 (368)
+..+|.++..+|++++|+.++++++. ..|++|.+.
T Consensus 217 ---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~ 251 (280)
T PF13429_consen 217 ---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWL 251 (280)
T ss_dssp ---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHH
T ss_pred ---HHHHHHHhcccccccccccccccccc-----ccccccccc
Confidence 35678889999999999999999875 355666553
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.97 E-value=0.049 Score=58.41 Aligned_cols=94 Identities=7% Similarity=0.002 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
..+.+.....+|++++|+..++++++. .|.++..+. .++.++...|++++|+.++++++ .|. |.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~------~p~--n~ 100 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ------SSM--NI 100 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc------cCC--CC
Confidence 344445556778888887777776653 233321111 45555555666666666666555 111 11
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
-...+..+|.++...|++.+|+..|+++++
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 112233345566666666666666666554
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.02 Score=57.26 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=76.4
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 310 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L 310 (368)
...|+|+.|++-|+.++. ..|++.. +.+.|+..+....+.++|+.-|+++++.. |...-..++|
T Consensus 441 ~ls~efdraiDcf~~AL~-----v~Pnd~~---lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNl 504 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQ-----VKPNDYL---LWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNL 504 (579)
T ss_pred hcchHHHHHHHHHHHHHh-----cCCchHH---HHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhh
Confidence 345688888888887764 3455554 47889999999899999999999998744 3344456999
Q ss_pred hhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649 311 GKLEWFLGDTENAIKSMTEAVEILRITHGTN 341 (368)
Q Consensus 311 a~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~ 341 (368)
|..+.++|-|.||+++|-.|+.+-+...+..
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~ 535 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHN 535 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999999976644
No 98
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.085 Score=49.56 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=72.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
..+.|.......+++.|..++++++.. ++...++--.++.+....|+|++|++.++.+++ .++--
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~y 247 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE-------QNPEY 247 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHH
Confidence 344555666667888888888887653 344455556688899999999999776655543 45555
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
++..+-.|...|..+|+.++++.++.++.+.
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6677788888999999999999999998863
No 99
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=95.94 E-value=0.0095 Score=60.06 Aligned_cols=88 Identities=22% Similarity=0.207 Sum_probs=62.8
Q ss_pred CHHHHHHHHhhhhccccccccCC-----CCceeEEEccccccccCCCccCcEEEE-eCCEEEEEEccCCCCCCeeEEecc
Q 017649 62 SINEIAENFSKLACNAHTICNSE-----LRPLGTGLYPVISIINHSCLPNAVLVF-EGRLAVVRAVQHVPKGAEVLISYI 135 (368)
Q Consensus 62 ~~~~~~~~~~~~~~N~~~i~~~~-----~~~~g~~lyp~~s~~nHsC~PN~~~~~-~~~~~~~~a~~~i~~geel~~~Y~ 135 (368)
+-+...-.++.+.+.+|...... ...--.++.|.+-++||+|.+.....+ .+..+.+++.++|.+|+||+|+|+
T Consensus 198 ~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG 277 (472)
T KOG1337|consen 198 TFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYG 277 (472)
T ss_pred chHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecC
Confidence 33445566666777777654331 112347889999999999999333332 234789999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCeE
Q 017649 136 ETAGSTMTRQKALKEQYLFT 155 (368)
Q Consensus 136 ~~~~~~~~R~~~L~~~~~F~ 155 (368)
+... ..|...|||.
T Consensus 278 ~~~N------~eLL~~YGFv 291 (472)
T KOG1337|consen 278 PKSN------AELLLHYGFV 291 (472)
T ss_pred CCch------HHHHHhcCCC
Confidence 9433 4567799997
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.92 E-value=0.11 Score=56.51 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=83.5
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
..+......|++++|...+.+++......-++.++....+...++.++...|++++|...+++++...+...+ ....
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---~~~~ 612 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---QQQL 612 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---hHHH
Confidence 3455567889999999999998887655433333333344556788888899999999999999998774432 2344
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
..+..+|.++...|++++|...+.++..+....
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 566789999999999999999999998876553
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.19 Score=50.68 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=79.2
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh-------------
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV------------- 291 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~------------- 291 (368)
++|=-.+..++.++|+..+. .+.+....++ .-=|+++..+|+|++|++.|+.++..
T Consensus 84 EKAYc~Yrlnk~Dealk~~~--------~~~~~~~~ll---~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl 152 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK--------GLDRLDDKLL---ELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL 152 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh--------cccccchHHH---HHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 33333445555666655544 2233333333 33567788889999999988876311
Q ss_pred ----------HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHH
Q 017649 292 ----------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 359 (368)
Q Consensus 292 ----------~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el 359 (368)
.....|...-..--.+||.|.++...|+|.+|++.|++|++|.+.++-.+..--.++...|.-+.-++
T Consensus 153 ~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 153 LAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 11222222222445789999999999999999999999999999887766555555666665554333
No 102
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.83 E-value=0.1 Score=37.74 Aligned_cols=62 Identities=26% Similarity=0.385 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
...++..+...|++++|+.++++++... | .++ ..++.+|.++...|++++|++.+.+++.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD----P-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC----C-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4568888999999999999998887642 2 333 567889999999999999999999998853
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.031 Score=59.03 Aligned_cols=92 Identities=11% Similarity=0.173 Sum_probs=72.4
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
+..+...|++.+|..++.++.+.... ...+.-|||.+|..+|+|..|+++++..+. +.|+.+.+.+
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~--------~~dv~lNlah~~~e~~qy~~AIqmYe~~lk---kf~~~~~~~v--- 718 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSD--------FEDVWLNLAHCYVEQGQYRLAIQMYENCLK---KFYKKNRSEV--- 718 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhh--------CCceeeeHHHHHHHHHHHHHHHHHHHHHHH---HhcccCCHHH---
Confidence 44566778899999999888664321 223466899999999999999999988775 5566666655
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+..||+++...|++.+|..++.+|..
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56789999999999999999988875
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.12 Score=51.48 Aligned_cols=109 Identities=24% Similarity=0.209 Sum_probs=82.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
.++....++.|+|+.|+..|-.++.+ -+++|+. +.+=..+|..+|+|.+|+.=..+.++ ..|.-
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l----~p~nhvl----ySnrsaa~a~~~~~~~al~da~k~~~--------l~p~w 69 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIML----SPTNHVL----YSNRSAAYASLGSYEKALKDATKTRR--------LNPDW 69 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHcc----CCCccch----hcchHHHHHHHhhHHHHHHHHHHHHh--------cCCch
Confidence 34555678999999999999877643 3444543 23455678899999999987777665 34777
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
+..|+.+|..+..+|++++|+..|.+.++. .|....+...|.++.
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAY 114 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhh
Confidence 788999999999999999999999998862 344556666666665
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.23 Score=49.56 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=85.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
..+..++..|+|.+|+..|-+++.. +|.-..++.|.|-+|..+|.+..|+.-|+..++. +|...
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~ 426 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFI 426 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHH
Confidence 4456678889999999999886653 2444556788999999999999999999988875 77777
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 357 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~ 357 (368)
..+..-|.++..+.+|.+|+..|++|++.= |.-.++...+..+.+
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHH
Confidence 778888999999999999999999988632 555555555555443
No 106
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.046 Score=54.67 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
++.++-+....+.|.+|..+++.++...+.+.+.- +.-.-.+.+||-++..++++++|+.++++|+..-.
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 34456566667899999999999998777776632 23333558999999999999999999999996443
No 107
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.65 E-value=0.018 Score=35.90 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.4
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
++.+||.++..+|++++|+.+|++|+.+-.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999986543
No 108
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.64 E-value=0.079 Score=52.32 Aligned_cols=72 Identities=11% Similarity=-0.041 Sum_probs=53.0
Q ss_pred CCccccHHHHHHHHHHHHHhhhhHHHHHHHHHh--hhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 255 HPFSVNLMQTREKLIKILMELEDWKEALAYCQL--TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 255 ~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~--~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+|+++. ...++.++.++...|+|++|.+++++ +++. .|++.. +..+|.+++.+|+.++|..++++++.
T Consensus 329 ~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~~~----~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDAND----LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566664 45677889999999999999998884 4432 222222 33779999999999999999999887
Q ss_pred hhcc
Q 017649 333 ILRI 336 (368)
Q Consensus 333 i~~~ 336 (368)
.+-.
T Consensus 399 ~~~~ 402 (409)
T TIGR00540 399 LMLA 402 (409)
T ss_pred HHhc
Confidence 6543
No 109
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.63 E-value=0.17 Score=54.28 Aligned_cols=97 Identities=10% Similarity=-0.072 Sum_probs=72.3
Q ss_pred HhhhcCChHHHHHHHHHHHHHhh---c-----ccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 229 ALTSCGNHQEVVSTYKMIEKLQK---K-----LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~~~---~-----~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
.+...|++++|+..++.+....- . .-.|+ .....+...++.++...|++++|++.+++++.. . |.+
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~----~-P~n 392 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN----A-PGN 392 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C-CCC
Confidence 34577899999999887765421 0 11122 223456678899999999999999998888754 2 344
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
+ ..++.+|.++...|++++|++.+++|+.+.
T Consensus 393 ~---~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 393 Q---GLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 4 467899999999999999999999998754
No 110
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.61 E-value=0.19 Score=47.33 Aligned_cols=95 Identities=15% Similarity=0.007 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.....+..+...|++++|+..+.+++++ .|++ ..++.+++.++...|++++|++.+++++.. .|.+|
T Consensus 100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~ 166 (296)
T PRK11189 100 AYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTY---NYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDP 166 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence 3455666778889999999999988764 3443 446788999999999999999999998863 35566
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
..+..+ .+....++.++|+..+.++...
T Consensus 167 ~~~~~~----~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 167 YRALWL----YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHH----HHHHccCCHHHHHHHHHHHHhh
Confidence 432221 1233467899999999876643
No 111
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.49 E-value=0.044 Score=50.99 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=51.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.+..+...|+++++..+++...... |.++.+ ...++.++..+|+.++|+.++++++. ..|.+|..
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~-- 250 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLW-- 250 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHH--
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhcccccccccccccccccc-----cccccccc--
Confidence 4445677788888777766654432 445544 45689999999999999999999775 33566654
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
+..+|.++...|+.++|..++++|+.-++
T Consensus 251 -~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 251 -LLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -HHHHHHHHT--------------------
T ss_pred -ccccccccccccccccccccccccccccC
Confidence 56889999999999999999999987654
No 112
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.49 E-value=0.85 Score=40.39 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=83.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-----------hhHHHHHHHHHhhhh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP 290 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-----------g~~~~Al~~~~~~l~ 290 (368)
..+..+......|++.+|+..+++.+. .+|.|+.+-.+...++.++..+ +...+|+..++..+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~-----~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIK-----LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH-----H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 445667778889999999999988765 4788998888888888876543 233466666666654
Q ss_pred hHHhhcCCCChHHH--------------HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649 291 VYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 291 ~~e~~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
.|| +++-.. ..-+.+|+.|...|.+..|+..++.+++-+ |+.+...+.+..|.+..
T Consensus 119 ----~yP-~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 119 ----RYP-NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAY 188 (203)
T ss_dssp ----H-T-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHH
T ss_pred ----HCc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 444 333322 223344888888999999998888877643 45566777777777776
Q ss_pred HHHhhhh
Q 017649 357 AEASYKL 363 (368)
Q Consensus 357 ~el~~~~ 363 (368)
.++....
T Consensus 189 ~~l~~~~ 195 (203)
T PF13525_consen 189 YKLGLKQ 195 (203)
T ss_dssp HHTT-HH
T ss_pred HHhCChH
Confidence 6655443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.44 E-value=0.044 Score=45.83 Aligned_cols=66 Identities=12% Similarity=-0.004 Sum_probs=53.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649 267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 345 (368)
Q Consensus 267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~ 345 (368)
.++.++...|++++|+.++++++.. .|.-...++.+|.++..+|++++|+..|.+|+.+ .|+++..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a 94 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEP 94 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHH
Confidence 5688889999999999999998753 2334466799999999999999999999999974 4555544
No 114
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=95.43 E-value=0.0084 Score=54.71 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=37.1
Q ss_pred cccccCCCccCcEEE---EeCC-EEEEEEccCCCCCCeeEEeccCCCCC
Q 017649 96 ISIINHSCLPNAVLV---FEGR-LAVVRAVQHVPKGAEVLISYIETAGS 140 (368)
Q Consensus 96 ~s~~nHsC~PN~~~~---~~~~-~~~~~a~~~i~~geel~~~Y~~~~~~ 140 (368)
..+||||=.+|+... .+|. .+++.|.++|.+||||+-.|+|....
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSke 382 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKE 382 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchh
Confidence 358999999999653 3453 58999999999999999999997643
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.42 E-value=0.087 Score=42.87 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.....++..+...|++++|.+++++++.. .+.+ ...+..+|.++..+|++.+|+..+++++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678889999999999999998887663 2333 456788999999999999999999999885
No 116
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.37 E-value=0.035 Score=34.59 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQ 293 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e 293 (368)
++.+|+.+|..+|+|++|++++++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999886554
No 117
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.34 E-value=0.032 Score=33.93 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=26.4
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
..++++|.++..+|++++|+..+++|+++-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999999863
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.32 E-value=0.22 Score=44.02 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=66.6
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhh
Q 017649 233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 312 (368)
Q Consensus 233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 312 (368)
.++.++++..+++.+.. .|. -...+..|+.+|...|++++|+..+++++.. .|+++. .+..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~-----~P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~---~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----NPQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAE---LYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHH
Confidence 34455666555555442 233 3557888999999999999999999988863 344444 4577788
Q ss_pred Hh-hhcCC--hHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649 313 LE-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMKELI 349 (368)
Q Consensus 313 l~-~~~g~--~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~ 349 (368)
++ ...|+ +++|...+.+|+. ..|+++.....+
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~-----~dP~~~~al~~L 150 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALA-----LDANEVTALMLL 150 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHH-----hCCCChhHHHHH
Confidence 64 56677 5999999999987 355665554433
No 119
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.31 E-value=0.033 Score=33.66 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.1
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
..++.+|.++..+|++++|+..+++|+.+-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999863
No 120
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.092 Score=51.84 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=70.8
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
|+.+..+++|++|++.|..+..+.. ..|--++..+-..+...-+..-.+++..|+.++++++++ .|.--.+
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~-~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A 539 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEP-REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQA 539 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhcc-ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHH
Confidence 5567788899999999998887642 222223222222222111222238999999999999863 4555677
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
+-.||.+...+|+.++|+++++++...-+-
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999876553
No 121
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.2 Score=49.58 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649 217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 296 (368)
Q Consensus 217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~ 296 (368)
......+-++...++.+|+|++|++.|..++.+. |+.+.. +.|.+.+|..+|+|++-++.|.++++
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiF---YsNraAcY~~lgd~~~Vied~TkALE------ 177 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIF---YSNRAACYESLGDWEKVIEDCTKALE------ 177 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchh---hhhHHHHHHHHhhHHHHHHHHHHHhh------
Confidence 4556667778888999999999999999988753 222222 56789999999999999999999986
Q ss_pred CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC-chHHHHHHHH
Q 017649 297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELILKL 352 (368)
Q Consensus 297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h-p~~~~l~~~L 352 (368)
..|.....+++=|.++-.+|++.+|+.-+ .++-|++-.-+... |+....+.+.
T Consensus 178 --l~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 178 --LNPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred --cCcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHH
Confidence 45788888999999999999999997643 24455555544443 3333344443
No 122
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.16 E-value=0.085 Score=51.97 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
....+.+..+...|++++|+..+++++++ .|++.....++++++.+|..+|++++|++.++++++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556677788999999999999998875 4666655567899999999999999999999999986
No 123
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.2 Score=45.23 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=74.0
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
....++...+|..|+..|.+++.+ +|..+....+=+..++...+|+.+..-|+++++. .|..+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~vk 79 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNLVK 79 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHHHH
Confidence 334445555788888888777653 3333444566677888899999999999999873 466778
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
..+-||........+.+|++.|.+|++.++..
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 88889999999999999999999999887643
No 124
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.09 E-value=0.37 Score=45.78 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh
Q 017649 216 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 295 (368)
Q Consensus 216 ~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~ 295 (368)
++.....+-+....++.+|+|++|+.-|.+... +.|+|+.+ ..+-|.+|..+..|..|..-|..++..-+..
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~---~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVY---HINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccc---hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 344444556677789999999999999987654 45666654 3456778999999999988888887644322
Q ss_pred cCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 296 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 296 ~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
..+|..=|.+-..+|...||.+-++.+++
T Consensus 165 --------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 165 --------VKAYSRRMQARESLGNNMEAKKDCETVLA 193 (536)
T ss_pred --------HHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence 23344445555566777788777777765
No 125
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.05 E-value=0.19 Score=38.70 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=53.5
Q ss_pred HhhhhHHHHHHHHHhhhhhHHhhcCCCC-hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 273 MELEDWKEALAYCQLTIPVYQRVYPQFH-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 273 ~~~g~~~~Al~~~~~~l~~~e~~~g~~h-p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
...|||..|++.+.+..+....-....+ ......+.++|.++...|.+++|+..+++|+++.+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999998887765544442 2356778899999999999999999999999998876
No 126
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.99 E-value=0.19 Score=36.11 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=47.7
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
.+..++++++|++.+++++.. +|.++ ..+...+.++..+|+|.+|++.+.++++. .|+++...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL-----DPDDP---ELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-----Ccccc---hhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence 346788999999999888764 44444 44667899999999999999999998853 34555543
No 127
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.46 Score=46.80 Aligned_cols=90 Identities=21% Similarity=0.102 Sum_probs=70.4
Q ss_pred cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
+-|+++.+ ...|+++|.++++.++|+..+.+++..-. .-+..++.||+++-+++++++|..++++-++.
T Consensus 427 ~kPnDsRl---w~aLG~CY~kl~~~~eAiKCykrai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 427 LKPNDSRL---WVALGECYEKLNRLEEAIKCYKRAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred cCCCchHH---HHHHHHHHHHhccHHHHHHHHHHHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666544 45689999999999999999888876332 14678999999999999999999999999998
Q ss_pred hccccCCCCchHHHHHHHHHHH
Q 017649 334 LRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 334 ~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
.. .-|...|.+.....-|+.=
T Consensus 496 ~~-~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 496 SE-LEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HH-hhcccchHHHHHHHHHHHH
Confidence 74 3477777777766666543
No 128
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.85 E-value=0.43 Score=35.42 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 296 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~ 296 (368)
..+++.-+++.+.+.++|+..+++++..... ......+...|+.+|.+.|.|.+++++..+=+++.+..-
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555667777889999999999876432 335677888899999999999999999888777776553
No 129
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.79 E-value=0.36 Score=50.87 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649 217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 296 (368)
Q Consensus 217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~ 296 (368)
..+++.++..|..++..|++++|..++..+++. ++....+...|+.+|...|+.++|+.....+- .+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-----HL 202 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-----HL 202 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-----hc
Confidence 345677888888889999999999999888764 23334567778888888888887766433221 22
Q ss_pred CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
-|..+ -.+..+|.+...+|.+.+|+-.|.+|+.
T Consensus 203 ~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 203 NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 23333 2345556666666666666666666654
No 130
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.71 E-value=0.47 Score=44.32 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=78.5
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhhHHh------hcCCCChHH
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQR------VYPQFHPLL 303 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~~e~------~~g~~hp~~ 303 (368)
..+|+++.|..++.++........+..-..+....++++.-....+ +++.|..+.++++++++. ..+......
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4678999999999988776543333334466778888888888888 999999999999999755 222233345
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 344 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~ 344 (368)
...+..|+.++...+..+...+ -.++++.++..+|. ||.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~ 122 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPE 122 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcH
Confidence 6677788888887776654333 45566666667664 443
No 131
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=0.057 Score=54.87 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=64.8
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
+.-+++++.|++.+++++.+ ++....++.-++.=+....+|++|..+++.++.+--+.| .++|-
T Consensus 431 fSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYG 494 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYG 494 (638)
T ss_pred hhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHh
Confidence 34467899999999888654 222334455567777778899999999999886543333 45678
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHh
Q 017649 310 CGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
||.+|..+++++.|+-+|++|++|
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcC
Confidence 889999999999888888887764
No 132
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.61 E-value=0.065 Score=32.44 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=27.2
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
..++.+|.++..+|++++|..++++|+++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999864
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.61 E-value=0.42 Score=47.25 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=68.2
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
+..|...+..|.+++|++.+..+++ ..|+|+.+.. ..+.+++..++.++|.+.+++++... | +.|
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~---~~~~i~~~~nk~~~A~e~~~kal~l~----P-~~~-- 374 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLE---LAGDILLEANKAKEAIERLKKALALD----P-NSP-- 374 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHhcC----C-Ccc--
Confidence 3445555666777777777666543 3577777654 46778999999999999999988632 3 334
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+...++|..+...|++.+|+..+.+.+.
T Consensus 375 -~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 375 -LLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 4457889999999999999998887664
No 134
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.40 E-value=1.2 Score=36.60 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=76.2
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
-++..+.+.|+.+.|++.|.+++.+. | ....++++-++++.-+|+-++|++-..++++.. |+--...-
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~-----P---~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtac 115 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLA-----P---ERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTAC 115 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhc-----c---cchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHH
Confidence 34555668899999999998887642 2 235678899999999999999999888888643 55544445
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
..+..=|.+|..+|+.+.|+.-|+.|.++
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 66777799999999999999999998864
No 135
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.24 E-value=0.93 Score=48.37 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=89.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc--ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h--~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.+.|.-.+..|++.+|...+..++.....+..++. ..-+.+.++|+.++-.+++++.|.+.|+.++. .||
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp 527 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EHP 527 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HCc
Confidence 34555566778888998888888776443333332 22355689999999999999999999988875 678
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
.+.-.+..||......+...+|..++.+++++ ...+|....++..+.-.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLK 576 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHh
Confidence 88888888987777888999999999999874 34567777777655433
No 136
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.11 E-value=0.36 Score=46.15 Aligned_cols=75 Identities=11% Similarity=0.005 Sum_probs=60.0
Q ss_pred cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
..+.++........++.++...|++++|...++++++. .|.+ ...+..+|.++...|++++|+.++.+++..
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 34566766777778888999999999999999998873 2333 456788899999999999999999999886
Q ss_pred hcc
Q 017649 334 LRI 336 (368)
Q Consensus 334 ~~~ 336 (368)
...
T Consensus 178 ~~~ 180 (355)
T cd05804 178 WDC 180 (355)
T ss_pred cCC
Confidence 543
No 137
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.00 E-value=0.66 Score=44.46 Aligned_cols=123 Identities=13% Similarity=0.177 Sum_probs=86.5
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc-CCCChH-HHHHHh
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQFHPL-LGLQYY 308 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~-g~~hp~-~~~~l~ 308 (368)
..-+.|+++++.++.+.+.....-++ ..-+++.-.|+..+..+.|+++|+-+..+++++...+- +..|.- ....++
T Consensus 133 lgls~fq~~Lesfe~A~~~A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 133 LGLSVFQKALESFEKALRYAHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 34456777777777777654322111 11235566788999999999999999999999887664 555544 478899
Q ss_pred hhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649 309 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 357 (368)
Q Consensus 309 ~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~ 357 (368)
.++..+..+|+..+|.++-++|.++.- .+|..- .....+.-+.++.+
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal-~~Gdra-~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLAL-QHGDRA-LQARCLLCFADIYR 257 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH-HhCChH-HHHHHHHHHHHHHH
Confidence 999999999999999999999998654 446543 33333344455543
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.95 E-value=0.23 Score=42.14 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc
Q 017649 259 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 338 (368)
Q Consensus 259 ~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~ 338 (368)
...+...+.++..+...|++++|..+++-+.. ..|.....+++||.++..+|++++|+..|.+|..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 55677788899999999999999998776653 23444567899999999999999999999999863
Q ss_pred CCCCch
Q 017649 339 GTNSPF 344 (368)
Q Consensus 339 G~~hp~ 344 (368)
.|++|.
T Consensus 99 ~~ddp~ 104 (157)
T PRK15363 99 KIDAPQ 104 (157)
T ss_pred CCCCch
Confidence 456653
No 139
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.92 E-value=0.17 Score=50.86 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC-Ch---HHHHHHhhh
Q 017649 235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-HP---LLGLQYYTC 310 (368)
Q Consensus 235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~-hp---~~~~~l~~L 310 (368)
+.++|++.|.+++.++ |...+++++|+..|+.+|.|++|++|+..+|.+-++-.... .| ...+.+.++
T Consensus 479 ~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~ 550 (579)
T KOG1125|consen 479 RSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL 550 (579)
T ss_pred ccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence 6789999999998863 44678899999999999999999999999999988754422 22 345555555
Q ss_pred hhHh
Q 017649 311 GKLE 314 (368)
Q Consensus 311 a~l~ 314 (368)
+-+.
T Consensus 551 als~ 554 (579)
T KOG1125|consen 551 ALSA 554 (579)
T ss_pred HHHH
Confidence 4443
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.86 E-value=0.15 Score=47.41 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=51.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 292 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~ 292 (368)
-++|..+.+-|.++.|++-++.++.+ ++...+++..|+.+|..+|++++|++.++++|++.
T Consensus 119 cNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 119 CNRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 35777888889999999999888765 55667788899999999999999999999998743
No 141
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.85 E-value=0.89 Score=39.72 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
++..+..+..+.+-|++.||+..|++++. .++.. + ..++-.++++....+++.+|...++.+.+.-. -.-..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qals---G~fA~-d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~p 160 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALS---GIFAH-D---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSP 160 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhc---cccCC-C---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCC
Confidence 34455567778888999999999988764 23332 2 23345688899999999999877666544210 00112
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
|+ +.-+|..+..+|++.+|+..++.|++
T Consensus 161 d~-----~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 161 DG-----HLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred Cc-----hHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 22 33468889999999999999998886
No 142
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.83 E-value=0.66 Score=42.44 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 342 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h 342 (368)
......+..+...|+|++|++.++.++. .+| .+|......+.+|.++...+++.+|+..+++.++.. |+|
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~ 102 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH 102 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence 3345567777788999999999888876 344 557777889999999999999999999999988643 666
Q ss_pred chHHHHHHHHH
Q 017649 343 PFMKELILKLE 353 (368)
Q Consensus 343 p~~~~l~~~L~ 353 (368)
|.+-...=++.
T Consensus 103 ~~~~~a~Y~~g 113 (243)
T PRK10866 103 PNIDYVLYMRG 113 (243)
T ss_pred CchHHHHHHHH
Confidence 66655444443
No 143
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.80 E-value=0.33 Score=47.76 Aligned_cols=98 Identities=5% Similarity=-0.032 Sum_probs=69.5
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh---------------
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV--------------- 291 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~--------------- 291 (368)
+......|++++|...+++..+ ..|+|+.. +..++.+|...|+|++|++++.+..+.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLE-----VAPRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA 231 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4455678899999988877654 34666644 556788999999999998665544421
Q ss_pred H-------------------HhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 292 Y-------------------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 292 ~-------------------e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+ -+-+|..+|...-....+|..+...|+.++|.+.++++++
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0 0123334444455667788999999999999999999876
No 144
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.8 Score=46.39 Aligned_cols=106 Identities=11% Similarity=0.087 Sum_probs=75.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHh-----------------------hcccCCccccHHHHHHHHHHHHHhhhhHHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQ-----------------------KKLYHPFSVNLMQTREKLIKILMELEDWKEAL 282 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~-----------------------~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al 282 (368)
.|+.++..|+|++|.++|+.+.+-. .+..+..--.......|.|.+++..|+|.+|+
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~ 195 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAI 195 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHH
Confidence 4566778888888888887763210 01111112235567788999999999999999
Q ss_pred HHHHhhhhhHHhhcCCCC-------hHHHHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649 283 AYCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 331 (368)
Q Consensus 283 ~~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl 331 (368)
+.++.++.+.++.+-... -.+......|+-++..+|+.+||...|...+
T Consensus 196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999887766554221 2355666778888999999999999776644
No 145
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.75 E-value=1.3 Score=44.74 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHH--------HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhH
Q 017649 207 VRSKEEIKKIASEVNI--------LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW 278 (368)
Q Consensus 207 ~~~~~~~~~~~~~~~~--------l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~ 278 (368)
..+.....+++..... ++..+.....+|+.++|++.++++...... +..-+ .-....++-.++.+++|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~---~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLH---HLCYFELAWCHMFQHDW 321 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHH---HHHHHHHHHHHHHHchH
Confidence 3445555555554433 345566667889999999999987643221 22222 22456788889999999
Q ss_pred HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCCh-------HHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649 279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILK 351 (368)
Q Consensus 279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~-------~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~ 351 (368)
++|.++..+..+.- .=..+...|-.|..+..+|+. ++|..++.++-....+.-|..-|.=+-+..+
T Consensus 322 ~~A~~~f~~L~~~s-------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK 394 (468)
T PF10300_consen 322 EEAAEYFLRLLKES-------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRK 394 (468)
T ss_pred HHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHH
Confidence 99999988877622 224677778888888899988 8999999999999998888888866666666
Q ss_pred HHHHH
Q 017649 352 LEEAQ 356 (368)
Q Consensus 352 L~~~~ 356 (368)
++.-.
T Consensus 395 ~~~~~ 399 (468)
T PF10300_consen 395 AQKYE 399 (468)
T ss_pred HHHHH
Confidence 65443
No 146
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.42 Score=47.06 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH----HhhcCC-------CChH
Q 017649 234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY----QRVYPQ-------FHPL 302 (368)
Q Consensus 234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~----e~~~g~-------~hp~ 302 (368)
+++++|+..+++++++ |+..+.+..-++.-|+.+.+-..|++-+++++++. +..||- .-|.
T Consensus 344 ~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 3567777777777664 55566666677777777777777777777777653 333331 1122
Q ss_pred HHH---------------HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 303 LGL---------------QYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 303 ~~~---------------~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
.+. .+..||..|..+++.++|++-|++|+..-.
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 222 233468888899999999999999986443
No 147
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.71 E-value=0.48 Score=50.00 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
.-+.+.|..++..|++.+|+.++..+.... +..+ ..+...+|.+|..+|.+++|++++.+++.. -|+|
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~----~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~ 482 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNRE----GYQN---AFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APDN 482 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCc----cccc---hhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCc
Confidence 345677888899999999999887664321 1112 556788999999999999999999998863 2455
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
. -....|+.++..+|+.++|...+.+
T Consensus 483 ~---D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 483 L---DARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred h---hhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 4 4467888999999999966655444
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.65 E-value=2.7 Score=41.42 Aligned_cols=108 Identities=9% Similarity=-0.051 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.....+......|+++.|.+...+..+. .|. +.+ ..-..+.++...|++++|.+++.++.+ ..|....
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~-----~~~-~~~--~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l 153 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH-----AAE-PVL--NLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNI 153 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc-----CCC-CHH--HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCch
Confidence 3344455556778888888777655432 111 111 122356666677777777777776542 2332222
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI 349 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~ 349 (368)
.+ ....+.++...|++++|...+++..+. .|+||.+..+.
T Consensus 154 ~~---~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ll 193 (409)
T TIGR00540 154 LV---EIARTRILLAQNELHAARHGVDKLLEM-----APRHKEVLKLA 193 (409)
T ss_pred HH---HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence 22 122366666677777777766665542 36666544433
No 149
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.59 E-value=0.51 Score=46.42 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
+..++.++...++|++|.+++++++.. .|..+. +..||.++..+|+.++|..++++++...
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~-----~P~~~~----~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQ-----RPDAYD----YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 444666666667777777766666653 122221 2346666667777777777777666543
No 150
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.58 E-value=1.1 Score=47.43 Aligned_cols=89 Identities=15% Similarity=-0.012 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh-ccccC----
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL-RITHG---- 339 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~-~~~~G---- 339 (368)
...|..++...|+++.|....++.++ .+|.+ ...+..|+.+|...|+.++|.+++++..+.- .+..|
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~-----~~p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYG-----MGPEK---LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhC-----CCCCC---CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 44455555555555555554444332 12222 2356677889999999999999988766432 11111
Q ss_pred -------------CCCchHHHHHHHHHHHHHHHhh
Q 017649 340 -------------TNSPFMKELILKLEEAQAEASY 361 (368)
Q Consensus 340 -------------~~hp~~~~l~~~L~~~~~el~~ 361 (368)
..||...++..+|..+..++..
T Consensus 569 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred EECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3499999999888888766643
No 151
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=2.5 Score=37.16 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=65.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
.+..|..+.+.+++++|+..++.++..-. +...-.-+...|+.+...+|.+++|+..+.... ++--
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w 157 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESW 157 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccH
Confidence 34556667788888888877776653211 111222345668889999999999977644322 2222
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
.+.....-|.++...|+..+|+..|++|+...
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23333445889999999999999999999865
No 152
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.32 E-value=0.14 Score=48.32 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=13.5
Q ss_pred hhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 308 YTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 308 ~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
.|+|......++++-++.-+++|+...
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 344444445555555555555555433
No 153
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=1.5 Score=39.94 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc---cCCccccHH-------HHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL---YHPFSVNLM-------QTREKLIKILMELEDWKEALAYCQLTI 289 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~---l~~~h~~l~-------~~~~~La~~~~~~g~~~~Al~~~~~~l 289 (368)
+..+..+...++..|+|.+|...|..++...+.+ --|..+..+ -.+-|.++++...|+|-+++++|..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456677888899999999999998876643322 123333332 245677888889999999999998887
Q ss_pred hhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 290 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 290 ~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
. -||.-..+||.=|++....-+..+|..-+.++++
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 5 4566678899999999999999999999999886
No 154
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.18 E-value=0.24 Score=46.28 Aligned_cols=80 Identities=23% Similarity=0.146 Sum_probs=63.1
Q ss_pred HHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcC-ChHHHHHHHHHHHHhhcc--ccCCCCchHHHH
Q 017649 272 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKEL 348 (368)
Q Consensus 272 ~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~kAl~i~~~--~~G~~hp~~~~l 348 (368)
...+|+++.|..++.++-.......|..--.++..+++.|+-....+ ++++|..++++|+++++. ..+..||...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35679999999998887776654445555567889999999999999 999999999999999876 245667777665
Q ss_pred HHH
Q 017649 349 ILK 351 (368)
Q Consensus 349 ~~~ 351 (368)
...
T Consensus 83 r~~ 85 (278)
T PF08631_consen 83 RLS 85 (278)
T ss_pred HHH
Confidence 543
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.17 E-value=0.35 Score=36.05 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 288 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~ 288 (368)
.....|..++..|++++|+.++++ ... ++........+|.++..+|+|++|++.++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 344567888899999999988876 211 2223555667899999999999999987753
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.03 E-value=0.23 Score=30.00 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVY 292 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~ 292 (368)
.+..+++.++..+|++++|+..+++++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467789999999999999999999998754
No 157
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.98 E-value=0.56 Score=46.06 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=72.6
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
....+..|++++|.+.|+.++. ++....+++.+++-.+-.+|++++|++.+.++-.++. ++ +-.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-----nn---~ev 560 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-----NN---AEV 560 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-----hh---HHH
Confidence 3345567888999888887764 3556778888888888899999999998777665553 22 345
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 345 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~ 345 (368)
++.+|.+|-.+.+...|+++|.+|..+ =|+.|-+
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-----ip~dp~i 594 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAI 594 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHH
Confidence 677888888888899999998888653 3566644
No 158
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.94 E-value=1.4 Score=38.11 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=61.9
Q ss_pred cccHHHHHHHHHHHHHhhhhH---HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcC----ChHHHHHHHHHH
Q 017649 258 SVNLMQTREKLIKILMELEDW---KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG----DTENAIKSMTEA 330 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~---~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g----~~~eA~~~l~kA 330 (368)
+|.-...+++-+.++..+.++ .++.++.+.++.-++..+- -+|.....++++|.++..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 333456667777777776555 4566777777765554332 22444455677777776553 446788888888
Q ss_pred HHhhccc--cCCCCchHHHHHHHH---HHHHHHHhhhh
Q 017649 331 VEILRIT--HGTNSPFMKELILKL---EEAQAEASYKL 363 (368)
Q Consensus 331 l~i~~~~--~G~~hp~~~~l~~~L---~~~~~el~~~~ 363 (368)
.+-++.. .-|+.+.++..+.+- -++.+|++.+.
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8877754 456677776655443 34466776653
No 159
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.93 E-value=0.59 Score=42.97 Aligned_cols=87 Identities=23% Similarity=0.174 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 344 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~ 344 (368)
.++.|.-+...|+|..|..-++..++-| |+++.+..++|=||..++.+|++++|...|..+.. . =|+||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~-~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----D-YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----h-CCCCCC
Confidence 4666666777899999998888877654 68888999999999999999999999999998887 2 257777
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017649 345 MKELILKLEEAQAEASY 361 (368)
Q Consensus 345 ~~~l~~~L~~~~~el~~ 361 (368)
.-|.+-+|..+..++.+
T Consensus 214 ApdallKlg~~~~~l~~ 230 (262)
T COG1729 214 APDALLKLGVSLGRLGN 230 (262)
T ss_pred ChHHHHHHHHHHHHhcC
Confidence 77878888777655543
No 160
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.81 E-value=2.6 Score=38.42 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh-hcCChHHHHHHHHHHHHhhccc
Q 017649 279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
++|...+++++++....+||.||.+.....+.+..++ ..|+.++|....++|++-....
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 5788899999999999999999998777777777765 4799999999888877655433
No 161
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.81 E-value=0.17 Score=49.50 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHH------H-HHhhcccCCccc---cHHHHHHHHHHHHHhhhhH
Q 017649 209 SKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMI------E-KLQKKLYHPFSV---NLMQTREKLIKILMELEDW 278 (368)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~------l-~~~~~~l~~~h~---~l~~~~~~La~~~~~~g~~ 278 (368)
..+.++++..++..+.++....-+.|++.+|+..-+.+ + +.+++.--|.+. .+..++.+|++-|....-+
T Consensus 138 peek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~ 217 (840)
T KOG2003|consen 138 PEEKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMT 217 (840)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHH
Confidence 35567778888888888777777888888887654332 2 112222222222 3346677777777655455
Q ss_pred HHHHHHHHhhhhhHHhhcC-CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 279 KEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 279 ~~Al~~~~~~l~~~e~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.+|+- .|+.+.- ...|.-|..-+++|.+++...++.+|+++|+-|++
T Consensus 218 ~ealn-------tyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald 265 (840)
T KOG2003|consen 218 AEALN-------TYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD 265 (840)
T ss_pred HHHhh-------hhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh
Confidence 55544 4443332 45566677788899999999999999999988876
No 162
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=0.65 Score=42.37 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH----H
Q 017649 228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL----L 303 (368)
Q Consensus 228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~----~ 303 (368)
....++|+--+|++.....++.+ + .+ ..+...|+.+|...|+|++|.-.+++.+-+ -|..|. +
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F---~-~D----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-----~P~n~l~f~rl 194 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKF---M-ND----QEAWHELAEIYLSEGDFEKAAFCLEELLLI-----QPFNPLYFQRL 194 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHh---c-Cc----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-----CCCcHHHHHHH
Confidence 34456677667776655554432 1 11 457788999999999999998877776532 244443 3
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
+-.+|.+|. ..++.-|.++|.+|+++-.
T Consensus 195 ae~~Yt~gg----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 195 AEVLYTQGG----AENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhh----HHHHHHHHHHHHHHHHhCh
Confidence 444444443 2456789999999998644
No 163
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.60 E-value=2 Score=35.53 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-CCC
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFH 300 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g-~~h 300 (368)
.....+......|++++|+..+++++.. +|.+- .+...++.+|...|+..+|++.+++....+..-+| +.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~E---~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-----DPYDE---EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-H---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 3344555567889999999998888764 34433 34567899999999999999999999999988888 455
Q ss_pred hHH
Q 017649 301 PLL 303 (368)
Q Consensus 301 p~~ 303 (368)
|.+
T Consensus 136 ~~~ 138 (146)
T PF03704_consen 136 PET 138 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.50 E-value=0.94 Score=43.92 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.....+..+...|++++|+..+.+++.+ .|. ...++..++.++..+|+|++|+..+++++. +.|.++
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~---~~~a~~~lg~~~~~lg~~~eA~~~~~~al~-----l~P~~~ 104 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIEL-----DPS---LAKAYLRKGTACMKLEEYQTAKAALEKGAS-----LAPGDS 104 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCH
Confidence 4456677778889999999999988765 233 345677899999999999999999999886 335666
Q ss_pred HHH
Q 017649 302 LLG 304 (368)
Q Consensus 302 ~~~ 304 (368)
...
T Consensus 105 ~~~ 107 (356)
T PLN03088 105 RFT 107 (356)
T ss_pred HHH
Confidence 654
No 165
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=7.7 Score=36.32 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHH-----HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHH
Q 017649 209 SKEEIKKIASEV-----NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA 283 (368)
Q Consensus 209 ~~~~~~~~~~~~-----~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~ 283 (368)
+.+++++++..+ ...+..+..+...|++.+|..++..++... |.+ ..+.-.++.+|...|+.+.|..
T Consensus 118 Pesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~ 189 (304)
T COG3118 118 PESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQA 189 (304)
T ss_pred cHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHH
Confidence 345666665432 334556667788999999999888876642 222 3445568888888888765544
Q ss_pred HHHh---------------hhhhHHhhc--C---------CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHH------
Q 017649 284 YCQL---------------TIPVYQRVY--P---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV------ 331 (368)
Q Consensus 284 ~~~~---------------~l~~~e~~~--g---------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl------ 331 (368)
.+.. -++..++.- | ...|.-.-.-+.||+.+...|++++|.++|-.-+
T Consensus 190 iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 190 ILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3322 122222111 1 0123233445788999999999999988754322
Q ss_pred ----------HhhccccCCCCchHHHHHHHHHH
Q 017649 332 ----------EILRITHGTNSPFMKELILKLEE 354 (368)
Q Consensus 332 ----------~i~~~~~G~~hp~~~~l~~~L~~ 354 (368)
++++ .+|+.||.+...+.+|..
T Consensus 270 ~d~~~Rk~lle~f~-~~g~~Dp~~~~~RRkL~s 301 (304)
T COG3118 270 EDGEARKTLLELFE-AFGPADPLVLAYRRKLYS 301 (304)
T ss_pred cCcHHHHHHHHHHH-hcCCCCHHHHHHHHHHHH
Confidence 2222 257777777777666654
No 166
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.30 E-value=1.3 Score=47.84 Aligned_cols=105 Identities=12% Similarity=-0.036 Sum_probs=74.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH---hhcC----C
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ---RVYP----Q 298 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e---~~~g----~ 298 (368)
.|+.+...+..++|..+++.++.-.... ++ ++.-+.....|..+|++.++|++|..+..+..+.-. ..+| .
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~-~~-~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKT-FR-NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccc-cC-CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 3556677778888888888875432111 11 222333456899999999999999999888775211 2233 5
Q ss_pred CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.+|........++.++...|++.+|+..+++.+.
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~ 444 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS 444 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777788888888999999999998887654
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.24 E-value=0.34 Score=29.02 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVY 292 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~ 292 (368)
.+...++.++..+|+|++|++++++++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456789999999999999999999998754
No 168
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.07 E-value=1.5 Score=41.81 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649 218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 296 (368)
Q Consensus 218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~-h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~ 296 (368)
.++...++.+.....+++|-++++.++++++.. |. -...+.....+..++...|.+.+|+.-|.+++++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~----- 336 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI----- 336 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-----
Confidence 344445566677778889999888888876532 22 2233444555777888899999999999999874
Q ss_pred CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649 297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 354 (368)
Q Consensus 297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~ 354 (368)
.|.-+..+-.=|.+|..-..|++|+.-|++|.+ +.++|...++=+.....
T Consensus 337 ---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e-----~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 337 ---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE-----LNESNTRAREGLERAKR 386 (504)
T ss_pred ---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHH
Confidence 344445566668888888999999999999986 34455544444433333
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=1.1 Score=43.68 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=52.6
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
+|..+.+-..+|.++..-|.++.++.++++.+..+ +.. .....||.+......+++|+++|.+|+.+
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----ccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55566677778888888899999999888887654 222 34467889999999999999999999873
No 170
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=91.96 E-value=0.16 Score=51.83 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=33.1
Q ss_pred cccccCCCccCcEEE--E-eC-CEEEEEEccCCCCCCeeEEeccC
Q 017649 96 ISIINHSCLPNAVLV--F-EG-RLAVVRAVQHVPKGAEVLISYIE 136 (368)
Q Consensus 96 ~s~~nHsC~PN~~~~--~-~~-~~~~~~a~~~i~~geel~~~Y~~ 136 (368)
+-+.|||=.|||... + .| .++-++|.|.|.+|||||..|-.
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 446799999999652 2 23 47889999999999999999953
No 171
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.90 E-value=2.9 Score=39.92 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 298 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~ 298 (368)
+++..++....+...|.+..|+..|..+.+. ++....+...-+.+|..+|+-.-|+.-+.++++.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------- 101 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL------- 101 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-------
Confidence 3444555666777888899999888877643 3444556677788899999988888777776653
Q ss_pred CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649 299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
-|...-+...=|.++..+|++++|+.-+.+.++ +.|+.....+.+.+|+-+
T Consensus 102 -KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 102 -KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALI 152 (504)
T ss_pred -CccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhH
Confidence 244444555668888899999999999888875 455555677777666544
No 172
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=4.5 Score=36.95 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=63.0
Q ss_pred cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH-HHHhhhh
Q 017649 233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG-LQYYTCG 311 (368)
Q Consensus 233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~-~~l~~La 311 (368)
..+|++|..-+.++.+-++.--. -..-+.++...+.....+..|.+++.+++++...|-.. .+|.++ ..+-+-|
T Consensus 44 Ak~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~---GspdtAAmaleKAa 118 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC---GSPDTAAMALEKAA 118 (308)
T ss_pred hccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---CCcchHHHHHHHHH
Confidence 34677776655555443321111 11235667778888888899999999999999888643 344443 3444444
Q ss_pred hHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 312 KLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 312 ~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
++. ..-+.++|+.+|++++.+++..
T Consensus 119 k~l-env~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 119 KAL-ENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHh-hcCCHHHHHHHHHHHHHHHhcc
Confidence 444 4556788888888888877654
No 173
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=2.9 Score=37.89 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=64.8
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~-~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
.|...+..++.++|+.-++++..+++.. |.... -+.-+..|+.+|-. +.++++|+.+++++-+-|. |......+
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~-Grf~~-aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk---~ees~ssA 153 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDM-GRFTM-AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK---GEESVSSA 153 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhh-hHHHH-HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc---chhhhhhH
Confidence 3444455567777777777777776542 11100 01222346666754 4788888888888877664 44444444
Q ss_pred H-HHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649 305 L-QYYTCGKLEWFLGDTENAIKSMTEAV 331 (368)
Q Consensus 305 ~-~l~~La~l~~~~g~~~eA~~~l~kAl 331 (368)
. .+.+.|.....+|+|.+|++.|++..
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 55677888888999999999988744
No 174
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.59 E-value=0.41 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
.++..|+.+....++|+.|++=+++++++.+.++|+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567799999999999999999999999999999874
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=91.17 E-value=1.9 Score=44.86 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=80.8
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH
Q 017649 198 GFTCQQCGLVRSKEEIKKIASEVNILSKKTLA-----LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL 272 (368)
Q Consensus 198 ~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~-----~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~ 272 (368)
.|.|..=.-..+..-.++...-......+|.. ..++++|+++.+.++..+++ ++....+...++.+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHH
Confidence 35565444444444444444333333334433 24567888888888877665 455677888889999
Q ss_pred HhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 273 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 273 ~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
...++|..|++.+...+. +-|+ -+-..+|++.+|...|+..+|...+++|+.
T Consensus 530 Lqlek~q~av~aF~rcvt-----L~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVT-----LEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHhhhHHHHHHHHHHhh-----cCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 999999999888776553 2244 456788999999888888888888888875
No 176
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.07 E-value=1.7 Score=41.68 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHhhcc-cCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhh
Q 017649 235 NHQEVVSTYKMIEKLQKKL-YHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 312 (368)
Q Consensus 235 ~~~eA~~l~~~~l~~~~~~-l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~ 312 (368)
++++|.-...++.++...+ ++.-|. +..-+..+++.++..+|+...|.++|+++.++.- --++-+..+..+.-+|.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--QHGDRALQARCLLCFAD 254 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--HhCChHHHHHHHHHHHH
Confidence 3445554445555543221 222222 2334667889999999999999999999887653 23567788888999999
Q ss_pred HhhhcCChHHHHHHHHHHHHhhcc
Q 017649 313 LEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 313 l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
+|...|+.+.|..-|++|+.++.-
T Consensus 255 IyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHHHhh
Confidence 999999999999999999987754
No 177
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.94 E-value=2.8 Score=32.07 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=56.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~-h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
...|++.+|++.+.+.......-..+. +.....+.-+++.+....|++++|+..+++++.+.+.. .+...++..+.-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence 466899999988888777644332222 22344566778899999999999999999999988865 344445555444
Q ss_pred hhhH
Q 017649 310 CGKL 313 (368)
Q Consensus 310 La~l 313 (368)
+..+
T Consensus 87 ~~~l 90 (94)
T PF12862_consen 87 LANL 90 (94)
T ss_pred HHHH
Confidence 4433
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.84 E-value=1.3 Score=41.75 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHh
Q 017649 235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 314 (368)
Q Consensus 235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~ 314 (368)
++++|...|+.+.. .+++ ...+++.++.+.+.+|+|++|.+.+.+++.. .+.+|. .+.+++.+.
T Consensus 182 ~~~~A~y~f~El~~----~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d---~LaNliv~~ 245 (290)
T PF04733_consen 182 KYQDAFYIFEELSD----KFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPD---TLANLIVCS 245 (290)
T ss_dssp CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHh----ccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHH---HHHHHHHHH
Confidence 57788877776432 2332 3455778899999999999999998887652 255565 567888888
Q ss_pred hhcCCh-HHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 315 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 315 ~~~g~~-~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
..+|+. +.+..++.+... ..|+||.++++..+=
T Consensus 246 ~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~~~ 279 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAEKE 279 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHHHH
Confidence 899988 455556655333 368899999888653
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.80 E-value=1.7 Score=42.67 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=58.6
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 310 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L 310 (368)
...++..+|+.+..+++.. .|.+ ..++..-+..+...++++.|++.+++++... |.--..++.|
T Consensus 211 l~~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~L 274 (395)
T PF09295_consen 211 LLMNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQL 274 (395)
T ss_pred HhcCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHH
Confidence 3444556666666655532 2333 4445567777888999999999999988743 4445677889
Q ss_pred hhHhhhcCChHHHHHHHH
Q 017649 311 GKLEWFLGDTENAIKSMT 328 (368)
Q Consensus 311 a~l~~~~g~~~eA~~~l~ 328 (368)
|++|..+|++++|+..+.
T Consensus 275 a~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 275 AECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhcCCHHHHHHHHh
Confidence 999999999999987654
No 180
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.76 E-value=0.54 Score=28.18 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQ 293 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e 293 (368)
++...++.+|..+|++++|.+++++++++-.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567899999999999999999999987653
No 181
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=4.6 Score=39.55 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH------hh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RV 295 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e------~~ 295 (368)
.++-+...+...|+.++|+-.|+.+..+ . |.-++.+..|...|...|.+.+|..+...++..+. .+
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~L-----a---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL 407 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQML-----A---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL 407 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhc-----c---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh
Confidence 3444444555667777777777665443 2 34567788899999999999998887777654442 23
Q ss_pred cC----------------------CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 296 YP----------------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 296 ~g----------------------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
+| .-.|.+..+-..+|.++...|+++++++++++++.++-
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence 33 12344555566778888889999999999999987654
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=90.50 E-value=0.72 Score=47.08 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 342 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h 342 (368)
.++..++..+...|++++|..++++++..- |. ...+..+|+++...|+.++|+..+.+|+. +.|.+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~~ 486 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPGE 486 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC
Confidence 445556666667799999999999988744 22 46788899999999999999999999986 45666
Q ss_pred chH
Q 017649 343 PFM 345 (368)
Q Consensus 343 p~~ 345 (368)
|.+
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 643
No 183
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.45 E-value=0.45 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=32.2
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 341 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~ 341 (368)
.+..||.+....+++++|+.-|++|++|.+..+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999887664
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.35 E-value=0.46 Score=30.80 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=28.8
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 345 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~ 345 (368)
.++.+|.++..+|++++|++.|+++++. .|+++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a 37 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHH
Confidence 4678999999999999999999999973 4555544
No 185
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.98 E-value=3.6 Score=35.70 Aligned_cols=103 Identities=11% Similarity=0.109 Sum_probs=69.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
+.+.+.-+..-|+.++|.+.|.++...... .-..+.+.-++..+.+..++|.....+..++-...+. |.+.-.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~ 111 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWER 111 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHH
Confidence 345666677889999999999887654322 2235666778888899999999999998888877765 322111
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
......--|..+...++|.+|-..|-.+..
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 111112224445567888888888777754
No 186
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.44 Score=45.86 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHhhhhcccccccc----------CCCCceeEEEccccccccCCCc-cCcEEEEeCCEEEEEEccCCCCCC
Q 017649 60 EISINEIAENFSKLACNAHTICN----------SELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA 128 (368)
Q Consensus 60 ~~~~~~~~~~~~~~~~N~~~i~~----------~~~~~~g~~lyp~~s~~nHsC~-PN~~~~~~~~~~~~~a~~~i~~ge 128 (368)
.++.++.+.+.+.+..-+|-|.- .+..+.|-..-|.+-++||.=. -|+...++.+.+.+.|.|+|++|+
T Consensus 173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd 252 (466)
T KOG1338|consen 173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD 252 (466)
T ss_pred ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence 57788888888887777776532 2234678888999999999876 677777888999999999999999
Q ss_pred eeEEeccCCCCC
Q 017649 129 EVLISYIETAGS 140 (368)
Q Consensus 129 el~~~Y~~~~~~ 140 (368)
|+..+|+-..++
T Consensus 253 ev~n~dg~~p~~ 264 (466)
T KOG1338|consen 253 EVDNSDGLKPMG 264 (466)
T ss_pred ccccccccCcch
Confidence 999999754443
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.81 E-value=0.95 Score=29.26 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
+...++.+|..+|++++|++.+++++.. .|++|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a 37 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHH
Confidence 4667999999999999999999999873 2455543
No 188
>PLN03077 Protein ECB2; Provisional
Probab=89.78 E-value=7.1 Score=42.42 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=70.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-----hhHHh------hcC-
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI-----PVYQR------VYP- 297 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l-----~~~e~------~~g- 297 (368)
+...|..++|.++++...... -..|+ ...+..+..++.+.|++++|.++.++.- .+|.. ..+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~--gi~P~----~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKY--SITPN----LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHh--CCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 445566666666665543221 01121 2344556666666666666666655420 00100 000
Q ss_pred ------------CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh-hcccc----------------C-CCCchHHH
Q 017649 298 ------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRITH----------------G-TNSPFMKE 347 (368)
Q Consensus 298 ------------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i-~~~~~----------------G-~~hp~~~~ 347 (368)
.-.|.-...+..|+.+|...|++++|.+..+.-.+. +++.. | ..||.+.+
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~ 752 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKE 752 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHH
Confidence 011222234566788899999999999987665431 12212 2 45999999
Q ss_pred HHHHHHHHHHHHh
Q 017649 348 LILKLEEAQAEAS 360 (368)
Q Consensus 348 l~~~L~~~~~el~ 360 (368)
+..+|+.+..++.
T Consensus 753 i~~~l~~l~~~~~ 765 (857)
T PLN03077 753 INTVLEGFYEKMK 765 (857)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876664
No 189
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=89.50 E-value=11 Score=34.45 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHhh
Q 017649 278 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 278 ~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i~ 334 (368)
.++|.+.++.++++...-+||.||.+.....+.+..+.. +++.++|....++|++-.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 347788888898888888999999987777777777765 588899998777766543
No 190
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.09 E-value=1.2 Score=33.99 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH---------------HhhcCCCChHHHHHHhhhhhHh
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVY---------------QRVYPQFHPLLGLQYYTCGKLE 314 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~---------------e~~~g~~hp~~~~~l~~La~l~ 314 (368)
=..++..++..+...|++++|++.+..++..- =.++|+.||.+.....+|+.++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 34678889999999999999998776654321 1467888898888888887765
No 191
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.99 E-value=0.75 Score=27.16 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVY 292 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~ 292 (368)
++..++.++...|++++|+++++++++-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999888643
No 192
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.78 E-value=0.52 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=25.1
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
+++.+|.++..+|++++|+..+++.++-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998763
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.14 E-value=3 Score=34.76 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 277 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~ 277 (368)
..++.+..++.++++++|+..+++.++ |||.|+.+--+....+-++..+..
T Consensus 49 AqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 49 AQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCCccHHHHHHHHHHHHHhh
Confidence 445667778899999999999988865 799999988887777766666543
No 194
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=88.03 E-value=0.24 Score=49.69 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=40.6
Q ss_pred ceeEEEccccc-cccCCCccCcEEEE----eCCEEEEEEccCCCCCCeeEEeccCC
Q 017649 87 PLGTGLYPVIS-IINHSCLPNAVLVF----EGRLAVVRAVQHVPKGAEVLISYIET 137 (368)
Q Consensus 87 ~~g~~lyp~~s-~~nHsC~PN~~~~~----~~~~~~~~a~~~i~~geel~~~Y~~~ 137 (368)
.+..+.++..| .+||||.||+...= ......+.|.+.|+.|+|+|.+|.-.
T Consensus 362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence 46677788877 66999999997532 23467899999999999999999644
No 195
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=88.01 E-value=4.3 Score=42.54 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=66.2
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHH--HHHhhhhhHHhhcCCCChHHHH
Q 017649 228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~--~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
.....+|.+.+|.+.|..++. +.|+|+..+ ..||.++...|+-..|.. +...++. ++|..| -
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~---~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~---e 755 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALA-----LDPDHVPSM---TALAELLLELGSPRLAEKRSLLSDALR-----LDPLNH---E 755 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHH---HHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCH---H
Confidence 334456677777777765553 578888764 458888998886655555 5555553 444444 4
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
.++.||.+...+|+.++|.+.|.-|++.-.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 688999999999999999999999987543
No 196
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.98 E-value=0.57 Score=46.15 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=67.2
Q ss_pred HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhh
Q 017649 286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 362 (368)
Q Consensus 286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~ 362 (368)
.+++-+.++++||.||.+.....--|-.|...|+++..+++++-|+++-+..+.|-+|.|...+..-++..+-+-++
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~d 395 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQD 395 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhhh
Confidence 46788899999999999987777778889999999999999999999999999999999998888877776655544
No 197
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.96 E-value=0.61 Score=26.24 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=25.2
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.++.+|.++...|++++|+..+++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4678999999999999999999999875
No 198
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.71 E-value=8.6 Score=30.59 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=58.0
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc---cHHHHHHHHHH-HHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV---NLMQTREKLIK-ILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~---~l~~~~~~La~-~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.|..++..|++-+|+++.+...... .++. .+......+.. .-....+-+-...|..-+++.+.+-.. -+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 4566788999999999988876543 2222 22222222222 122334555666788888887765543 445
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.-+..+++||+-+-..--|++++..-++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5578888887665333445555444444443
No 199
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.62 E-value=4.9 Score=38.96 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=51.8
Q ss_pred cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.||+++ .....|+..|...+.|.+|..+++.+++. .+. +..+..+|.++..+|+..+|....++++-.
T Consensus 323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKL-----RPS----ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 356666 34566888899999999999998877752 222 244567888899999999999999999843
Q ss_pred h
Q 017649 334 L 334 (368)
Q Consensus 334 ~ 334 (368)
.
T Consensus 391 ~ 391 (400)
T COG3071 391 T 391 (400)
T ss_pred h
Confidence 3
No 200
>PLN03218 maturation of RBCL 1; Provisional
Probab=87.42 E-value=6.1 Score=44.01 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=31.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 289 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l 289 (368)
...+...|++++|..++...... -+.|+ ..++..|..+|...|++++|.+++.+..
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33455667777777776654332 12222 2345566666666677776666655543
No 201
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=86.88 E-value=6.3 Score=41.32 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=59.6
Q ss_pred cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
++|+|+ .+...|+.-|..+++...|+++++++++. -|.+|+. .+.-||.+....+++.+|++...-|++-
T Consensus 473 ~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 473 FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 567777 34567888889999999999999999874 3556653 3455677888899999999999998876
Q ss_pred hccccCCCC
Q 017649 334 LRITHGTNS 342 (368)
Q Consensus 334 ~~~~~G~~h 342 (368)
....|+..|
T Consensus 543 ~~~N~~l~~ 551 (799)
T KOG4162|consen 543 FGDNHVLMD 551 (799)
T ss_pred hhhhhhhch
Confidence 555444433
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.70 E-value=3.1 Score=34.33 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=49.9
Q ss_pred HHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 269 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 269 a~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
+.+....|+.+.|++.+.+++... |..+..|++=|+.+.-+|+.++|++-+.+|+++.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 345667899999999999998754 6677889999999999999999999999999854
No 203
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.14 E-value=0.39 Score=47.28 Aligned_cols=71 Identities=6% Similarity=0.099 Sum_probs=60.4
Q ss_pred HHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh
Q 017649 245 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW 315 (368)
Q Consensus 245 ~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~ 315 (368)
+++-+.+++++|.|+++.....--+.+|.++|+|+.++++.+.+++...+.+-|-+|.++..+...+.+..
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 35556788999999988765555566889999999999999999999999999999999998888877764
No 204
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.14 E-value=1.6 Score=41.43 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=58.3
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH-------hhc------
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ-------RVY------ 296 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e-------~~~------ 296 (368)
++-.++.+-|...|++++.+ |..++. ...+++-+++..++++-++.-.++++.... ..|
T Consensus 334 yfY~~~PE~AlryYRRiLqm-----G~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQM-----GAQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred cccCCChHHHHHHHHHHHHh-----cCCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 44557888899889888764 222332 234555555555555544444444432221 000
Q ss_pred ----------------CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 297 ----------------PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 297 ----------------g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
=...+.-+-.++|||.+....|+.++|..+|..|....
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 02445566778888888888888888888888777643
No 205
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=85.84 E-value=3.9 Score=44.35 Aligned_cols=63 Identities=14% Similarity=0.022 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
++..||.+|-.+|++++|.+.++++++.- +.+| ..+.++|-.+... ++++|+.++.+|+..+-
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~---~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNP---EIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccH---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 67789999999999999999988888643 4444 5578888888888 89999999999987644
No 206
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.80 E-value=2.4 Score=37.97 Aligned_cols=89 Identities=17% Similarity=0.036 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc-hHHHHHHHHH
Q 017649 275 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP-FMKELILKLE 353 (368)
Q Consensus 275 ~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp-~~~~l~~~L~ 353 (368)
...+++|++-+..++-.++ +.+..+-..|..+.++|=++..+|+.+....++++|++.++..+-.+.. ....-...+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 3467788888888887765 3455666899999999999999999999999999999999988765543 3333333455
Q ss_pred HHHHHHhhhhc
Q 017649 354 EAQAEASYKLS 364 (368)
Q Consensus 354 ~~~~el~~~~~ 364 (368)
.+..||..+.+
T Consensus 169 YLigeL~rrlg 179 (214)
T PF09986_consen 169 YLIGELNRRLG 179 (214)
T ss_pred HHHHHHHHHhC
Confidence 55555555544
No 207
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=85.79 E-value=5.7 Score=39.51 Aligned_cols=108 Identities=16% Similarity=0.056 Sum_probs=67.5
Q ss_pred HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHH
Q 017649 228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY 307 (368)
Q Consensus 228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l 307 (368)
+.+...++..+|.+.+++++.+ .|+.+ -...+++++|+..|+..+|+.+..+.+... |+.| ..+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l-----~P~~~---~l~~~~a~all~~g~~~eai~~L~~~~~~~-----p~dp---~~w 411 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL-----DPNSP---LLQLNLAQALLKGGKPQEAIRILNRYLFND-----PEDP---NGW 411 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc-----CCCcc---HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----CCCc---hHH
Confidence 3456778889999988888754 34442 335689999999999999988877655321 2223 334
Q ss_pred hhhhhHhh-----------------hcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649 308 YTCGKLEW-----------------FLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 308 ~~La~l~~-----------------~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
..||..|. ..|++++|+..+.+|.+- .+.+.|...+.-..+.++
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQL 472 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHH
Confidence 44444444 446666666666666653 445566555554444443
No 208
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=85.70 E-value=11 Score=40.96 Aligned_cols=113 Identities=13% Similarity=-0.027 Sum_probs=69.7
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH------------h
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------------R 294 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e------------~ 294 (368)
+..+...+++++|+.+++..++ .+|+. +..+..++.++...+++..|.-. .++++.. .
T Consensus 38 i~~~~~~~~~deai~i~~~~l~-----~~P~~---i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLK-----EHKKS---ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-----hCCcc---eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 3344577899999988876544 23333 33444556677766666655443 2222111 1
Q ss_pred hcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649 295 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 358 (368)
Q Consensus 295 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e 358 (368)
..| .++.--.+++.||..|..+|+.++|...+++++++= |+++.+ +++++...++
T Consensus 108 ~i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a---LNn~AY~~ae 162 (906)
T PRK14720 108 KIL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI---VKKLATSYEE 162 (906)
T ss_pred HHH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH---HHHHHHHHHH
Confidence 111 122222488999999999999999999999999754 555543 5666555444
No 209
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=85.40 E-value=5.5 Score=36.45 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc--cCCCCch
Q 017649 267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPF 344 (368)
Q Consensus 267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~--~G~~hp~ 344 (368)
.++...+..|+|.+|+...+++...- |.=+-.++-+|-+|...|++++|..-|.+|+++.-.. .=.++-+
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~--------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLA--------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccC--------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 37788888999999999988877522 2233456788999999999999999999999855322 1122333
Q ss_pred HHHHHHHHHHHHHH
Q 017649 345 MKELILKLEEAQAE 358 (368)
Q Consensus 345 ~~~l~~~L~~~~~e 358 (368)
...+...++.++..
T Consensus 177 s~~L~gd~~~A~~l 190 (257)
T COG5010 177 SLLLRGDLEDAETL 190 (257)
T ss_pred HHHHcCCHHHHHHH
Confidence 33444444444443
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.14 E-value=32 Score=31.91 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCC
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 340 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~ 340 (368)
+..+.+..+.+.+.+|+|++|....+.+++-. +..|.+ +-|+-.+...+|+..++..-+-.-+ +..-|
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-----~~dpet---L~Nliv~a~~~Gkd~~~~~r~l~QL----k~~~p 273 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-----AKDPET---LANLIVLALHLGKDAEVTERNLSQL----KLSHP 273 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----CCCHHH---HHHHHHHHHHhCCChHHHHHHHHHH----HhcCC
Confidence 45567788889999999999999988888643 233554 4566666677788877654333222 34568
Q ss_pred CCchHHHHHHHHHH
Q 017649 341 NSPFMKELILKLEE 354 (368)
Q Consensus 341 ~hp~~~~l~~~L~~ 354 (368)
+||++++...+=++
T Consensus 274 ~h~~vk~~~ekeae 287 (299)
T KOG3081|consen 274 EHPFVKHLNEKEAE 287 (299)
T ss_pred cchHHHHHHHHHHH
Confidence 99999998866443
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.01 E-value=5.5 Score=36.81 Aligned_cols=121 Identities=13% Similarity=0.191 Sum_probs=74.7
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
.+.-|+.+.|...++++.+.-.+ +..-... .-+..+.+.++..+.+|..|...+.+.+ ...|...+..++
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~-~~V~~n~a~i~lg~nn~a~a~r~~~~i~--------~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQK-LDGLQGK-IMVLMNSAFLHLGQNNFAEAHRFFTEIL--------RMDPRNAVANNN 291 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhh-hhccchh-HHHHhhhhhheecccchHHHHHHHhhcc--------ccCCCchhhhch
Confidence 45667877777777776643222 2221111 1233455666777778887766554433 355666777888
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhhhccC
Q 017649 310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSK 366 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~~~~~ 366 (368)
-|.++..+|+..+|++.++.++.+. |.|..+..+.-+|..+ -|+.|.+|.+
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~-----P~~~l~es~~~nL~tm-yEL~Ys~~~~ 342 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQD-----PRHYLHESVLFNLTTM-YELEYSRSMQ 342 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-----CccchhhhHHHHHHHH-HHHHhhhhhh
Confidence 8999999999999999999988754 3444444444444433 3555555543
No 212
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=84.84 E-value=5.2 Score=39.36 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=66.1
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 311 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La 311 (368)
..+++++|+.+++++.+.. | . +...|++++...++-.+|+++..+++. ..|.-+..+...|
T Consensus 181 ~t~~~~~ai~lle~L~~~~-----p---e---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD-----P---E---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSELLNLQA 241 (395)
T ss_pred hcccHHHHHHHHHHHHhcC-----C---c---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHHHHHHHH
Confidence 3467889998888765431 2 2 223478888888888899999888883 2233356667778
Q ss_pred hHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649 312 KLEWFLGDTENAIKSMTEAVEILRITHGTNS 342 (368)
Q Consensus 312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h 342 (368)
..+...++++.|++..++|..+.=-.+..+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~ 272 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPSEFETWY 272 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCchhHHHHH
Confidence 8899999999999999999986544444433
No 213
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.79 E-value=4.7 Score=29.77 Aligned_cols=50 Identities=18% Similarity=0.039 Sum_probs=36.4
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc--ccCCCCchHHH-HHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKL 352 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~--~~G~~hp~~~~-l~~~L 352 (368)
.|+.+...|.-.-..|++++|+.+|.+|++.+.. .+|...|..++ +..++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~ 57 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKS 57 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3566777777888999999999999999999987 55634443333 34444
No 214
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.76 E-value=20 Score=35.13 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=68.4
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH--hhhhHHHHHHHHHhhhhhHHh------
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTIPVYQR------ 294 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~--~~g~~~~Al~~~~~~l~~~e~------ 294 (368)
....+..++..++|..|..++..+... +++... ...+..|+..|. +.-++.+|.++++..+.....
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~ 207 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQERE 207 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHH
Confidence 345566778889999999998887653 333322 455666776664 566778888877755532111
Q ss_pred --------------hcC------C--C--ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc----cccCCC
Q 017649 295 --------------VYP------Q--F--HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR----ITHGTN 341 (368)
Q Consensus 295 --------------~~g------~--~--hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~----~~~G~~ 341 (368)
..+ . . .+.+...++..|.--...|+|++|+-.+-+|++.+- ..||-+
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~ 282 (379)
T PF09670_consen 208 GLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGID 282 (379)
T ss_pred HHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 111 0 0 122233333334444567999999999888887543 256644
No 215
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.62 E-value=1.3 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHHHHhhhhHHHHH
Q 017649 259 VNLMQTREKLIKILMELEDWKEAL 282 (368)
Q Consensus 259 ~~l~~~~~~La~~~~~~g~~~~Al 282 (368)
|.-..++.+|+.+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334456889999999999999986
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.58 E-value=21 Score=33.37 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=72.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh---hhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~---g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
.+..++..|++..|...|.++.++ .|+|+.+. ..++.++..+ .+-.++..++++++. -+|-.
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~---~g~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~~~ 226 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRL-----AGDNPEIL---LGLAEALYYQAGQQMTAKARALLRQALA-------LDPAN 226 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHhcCCcccHHHHHHHHHHHh-------cCCcc
Confidence 345577888999999999888754 34556553 3455555433 233456666666553 22222
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~ 360 (368)
+ -.++-||..++..|++.+|...++.-++ ...++.|-..-+...+........
T Consensus 227 i-ral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~~~~~ 279 (287)
T COG4235 227 I-RALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARALAQRS 279 (287)
T ss_pred H-HHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHHhccc
Confidence 2 4567789999999999999998777665 455666655555555444444333
No 217
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=84.25 E-value=6.9 Score=40.30 Aligned_cols=96 Identities=19% Similarity=0.083 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
.++.++.+.++.+.|...++..+.++.. +|.|...+.+ .+-.+..+|+-++|.++++..+. +.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k-----~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~ 72 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK-----FPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----CCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCc
Confidence 4556666677777787777777777762 4667766543 34456678999999999888775 223
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.-.+-+.-+|-++....+|.+|++.|+.|+.+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 33345666788999999999999999999974
No 218
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.22 E-value=11 Score=42.07 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=30.3
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649 229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 289 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l 289 (368)
.+...|++++|.+++......... +.|+ ..++..|..+|.+.|++++|.++++...
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~g-i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHP-IDPD----HITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCC-CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556777777776665432111 1222 2344556666666666666666655543
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=84.17 E-value=5.8 Score=33.93 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=58.0
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
....+......|.-+...|++++|..+++-+.- |.+..|.. ++-||..+..++++++|+..|..|.-+-..-
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 445666777788778889999999988775442 55666664 5889999999999999999999998766544
Q ss_pred cCC
Q 017649 338 HGT 340 (368)
Q Consensus 338 ~G~ 340 (368)
++|
T Consensus 105 p~p 107 (165)
T PRK15331 105 YRP 107 (165)
T ss_pred CCc
Confidence 444
No 220
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=84.03 E-value=20 Score=36.59 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc-ccCCCC-chHHHHHHHHHHHH
Q 017649 279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI-THGTNS-PFMKELILKLEEAQ 356 (368)
Q Consensus 279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~-~~G~~h-p~~~~l~~~L~~~~ 356 (368)
..+++++.+++.+.+..|+..|. .-|.-+|.-+...+++.+|+..+-+|-++++. .|+.+. .++++.+.-..++.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneLi 372 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANELI 372 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHHH
Confidence 45788999999999999995554 34555777788999999999999998887764 477664 57788776666554
Q ss_pred HHHh
Q 017649 357 AEAS 360 (368)
Q Consensus 357 ~el~ 360 (368)
-.+.
T Consensus 373 P~~l 376 (618)
T PF05053_consen 373 PNVL 376 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 221
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=83.78 E-value=3.7 Score=41.90 Aligned_cols=62 Identities=31% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHH
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 330 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kA 330 (368)
++.+...||+.|-..|++++|+++..++|+. .|...-.++.-|+++-..|++.+|...+.+|
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999873 3555566778899999999999888876643
No 222
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.62 E-value=21 Score=31.53 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
+.-.++..+.+.+++++|+..++.++. ++.+.-...+.-.+||++...+|++++|++.+..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 345688899999999999998888775 5567777788889999999999999999987764
No 223
>PLN02789 farnesyltranstransferase
Probab=83.34 E-value=23 Score=33.84 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=52.2
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhhHHhhcCCCC----------
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFH---------- 300 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~~e~~~g~~h---------- 300 (368)
..++.++|+.++.+++.+ .|.|+. +...-+.++..+| ++++|+..+.+++....+-|...|
T Consensus 49 ~~e~serAL~lt~~aI~l-----nP~~yt---aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 49 SDERSPRALDLTADVIRL-----NPGNYT---VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred cCCCCHHHHHHHHHHHHH-----CchhHH---HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 456778888888877654 344443 3444455555556 567777777766643322222111
Q ss_pred ------------------hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 301 ------------------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 301 ------------------p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
|.-..++...+-++..+|++++|+.++.+++++
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 111122223344455567777888877777764
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.99 E-value=8.7 Score=33.25 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
.+-.++..++..|.+.||+++|++.+.++.+ ..-++. ......+++-.+....+++..+.+++.||..+.+.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARD---YCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 4556778899999999999999999888655 222322 33455667777888889999999999999998888
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.94 E-value=16 Score=36.69 Aligned_cols=91 Identities=14% Similarity=0.036 Sum_probs=56.4
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC-----------
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH----------- 300 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h----------- 300 (368)
...+.+.-+++-++++++. ++...++--|+.- ...-..+|.++++++++.-+..+|...
T Consensus 180 RERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3345666666667776652 2233332222211 122356777777877777777766431
Q ss_pred ------hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 301 ------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 301 ------p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.........||...+.+|+.+||++.++.-++
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk 287 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK 287 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 11234556789999999999999999887765
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.80 E-value=0.73 Score=28.21 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.1
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHH
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAI 324 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~ 324 (368)
+|.-...+++||.++...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3555577899999999999999986
No 227
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.66 E-value=6.4 Score=41.83 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=50.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 310 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L 310 (368)
..-|-.++|..+|+++.+ .+-|-+.|..+|.|.+|+++.+. .+-..+-..+++.
T Consensus 811 ieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNY 864 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHH
Confidence 344556666666665532 23355568888999999886543 1223344677888
Q ss_pred hhHhhhcCChHHHHHHHHHH
Q 017649 311 GKLEWFLGDTENAIKSMTEA 330 (368)
Q Consensus 311 a~l~~~~g~~~eA~~~l~kA 330 (368)
|+-+...++.+.|+.+|+|+
T Consensus 865 A~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhc
Confidence 88888889999999999884
No 228
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.55 E-value=11 Score=35.36 Aligned_cols=72 Identities=22% Similarity=0.193 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 342 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h 342 (368)
......+..|...|.+.+|++++++++. .||.--.....|-.++...|+--+|.++|.+-.+.+++.+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 3445567788889999999999999885 56666666777777888999999999999999999999999763
No 229
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.39 E-value=1.4 Score=25.11 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.9
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
..+.||.+++.+|+.++|+..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998763
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.06 E-value=27 Score=36.72 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=64.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH------Hhh--------------cccCCccccHH
Q 017649 203 QCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEK------LQK--------------KLYHPFSVNLM 262 (368)
Q Consensus 203 ~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~------~~~--------------~~l~~~h~~l~ 262 (368)
.||.-....-++++-.-.......|+..---|+|++|.++|-.+.+ ++. .--+.++...-
T Consensus 717 rc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e 796 (1189)
T KOG2041|consen 717 RCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKE 796 (1189)
T ss_pred hhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHH
Confidence 4555444433444322222223344444445677777766533211 111 11133455556
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhh------------------hhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHH
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLT------------------IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAI 324 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~------------------l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~ 324 (368)
.+..+++..+.++..|++|.+|+... ++..-+.+|.+|+.+- .+|......|.-++|+
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp----~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLP----VMADMFTSVGMCDQAV 872 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHH----HHHHHHHhhchHHHHH
Confidence 77888999999999999999887652 2334466888887653 2333333344444444
Q ss_pred H
Q 017649 325 K 325 (368)
Q Consensus 325 ~ 325 (368)
.
T Consensus 873 ~ 873 (1189)
T KOG2041|consen 873 E 873 (1189)
T ss_pred H
Confidence 4
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.72 E-value=12 Score=34.30 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=55.6
Q ss_pred cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
|.|+-..-...+...+.+|....+|++|-..++++.+.+|.--..+|. +.++-..|.+.-...++.|++.+++||...
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA--AKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA--AKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555555556667777788888888888888888888888765555554 344555566666666777777777777665
Q ss_pred hccc
Q 017649 334 LRIT 337 (368)
Q Consensus 334 ~~~~ 337 (368)
+...
T Consensus 101 Y~E~ 104 (308)
T KOG1585|consen 101 YVEC 104 (308)
T ss_pred HHHh
Confidence 5444
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.98 E-value=5.6 Score=39.52 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=73.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
+-++|..+....+|+.|+.+|.+++++ +|+...+.. +=+.++...++|..|+.=+.++++ ..|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~a---nRa~a~lK~e~~~~Al~Da~kaie--------~dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFA---NRALAHLKVESFGGALHDALKAIE--------LDPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeec---hhhhhheeechhhhHHHHHHhhhh--------cCch
Confidence 344566667778999999999998874 454443322 223667888999999887777775 3377
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 347 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~ 347 (368)
....|+.=|.....++++.+|...|++... .-|+-|..+.
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~-----l~Pnd~~~~r 110 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKK-----LAPNDPDATR 110 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhh-----cCcCcHHHHH
Confidence 777777778888888888888888777654 2355554433
No 233
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.90 E-value=36 Score=36.61 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=70.6
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCC-ccccH----HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHP-FSVNL----MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~-~h~~l----~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
|....++.++.+|..+..++... +++ .+... +....--+.+....|+.++|+++++.++. .+|...+
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~----l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~----~L~~~~~ 493 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHF----LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV----QLPEAAY 493 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHH----hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcccccc
Confidence 44456777888887777666543 222 22211 11111223345567899999999998875 3454444
Q ss_pred H-HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 302 L-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 302 ~-~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
. ..+.+..+|.+..-.|++.+|..+.++|.++.+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 4 56788899999999999999999999999887765
No 234
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.74 E-value=37 Score=33.02 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=57.5
Q ss_pred CHHHHHHHHH----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC---------------------ccccHHH
Q 017649 209 SKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLMQ 263 (368)
Q Consensus 209 ~~~~~~~~~~----~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~---------------------~h~~l~~ 263 (368)
+++.+..+++ .+.++...+..+..+|+++.|.++.++++-..++.+|+ .|..+..
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL 104 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence 4455555554 46777888888889999999999999887665544333 2444455
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTI 289 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l 289 (368)
+...-+..+...|-|.-|+++|+-++
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLl 130 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLL 130 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66666677778899999999888654
No 235
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.63 E-value=10 Score=36.53 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=57.9
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHh
Q 017649 229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 308 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~ 308 (368)
.+.+..+|..|+.+++-.+... .-.--.+...++.++..+|+|++|+..+.-+.+ .+.|. +-.-.
T Consensus 31 dfls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~~-~el~v 95 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDAP-AELGV 95 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCCC-cccch
Confidence 4557778988988876543221 111123445689999999999999887665543 11111 23346
Q ss_pred hhhhHhhhcCChHHHHHHHHHH
Q 017649 309 TCGKLEWFLGDTENAIKSMTEA 330 (368)
Q Consensus 309 ~La~l~~~~g~~~eA~~~l~kA 330 (368)
+||...+.+|+|.+|...-.+|
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC
Confidence 7888999999999998876654
No 236
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=80.55 E-value=6.1 Score=41.85 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 331 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl 331 (368)
+++.|+..|...|++++|++++++.... -..|++ ..+..+...+...|..++|..++.+..
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~---g~~Pd~----~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAE---GVAPNH----VTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 4556667777777777777776664421 111221 223333334444555555555554443
No 237
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.39 E-value=4.4 Score=30.93 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=35.9
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHH----------------hhccccCCCCchHHHHHHHHHHH
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVE----------------ILRITHGTNSPFMKELILKLEEA 355 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~----------------i~~~~~G~~hp~~~~l~~~L~~~ 355 (368)
-..+.+|..+...|++++|++.+-+.+. ++ ..+|+.||.+..-..+|..+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f-~~lg~~~plv~~~RRkL~~l 88 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF-ELLGPGDPLVSEYRRKLASL 88 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH-HHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH-HHcCCCChHHHHHHHHHHHH
Confidence 5668899999999999999998765442 22 23689999998888887654
No 238
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.15 E-value=8.1 Score=37.84 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=65.1
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHH---------HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK---------LIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~---------La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
+...++.+.|+..+++.++ ++|.|...-.+... =+.-..+.|+|.+|.+.+..+|.+- |.+-
T Consensus 213 ~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id----P~n~ 283 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID----PSNK 283 (486)
T ss_pred cccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC----cccc
Confidence 4455677777777777664 56666654433322 2333346688999999999888643 3333
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
-..+..|.+.|.+...+|+..+|+.--..|+.|
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 445788889999999999999998876666653
No 239
>PLN03077 Protein ECB2; Provisional
Probab=80.12 E-value=16 Score=39.80 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=63.2
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
+..+...|+.++|++++++.... -+.|+... ...+..+|...|++++|.+++....+. +| ..|.. .+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~----~g-i~P~~-~~ 627 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVES---GVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEK----YS-ITPNL-KH 627 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc---CCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHH----hC-CCCch-HH
Confidence 34455778889999888876532 23454333 445667888999999999988776533 23 22322 56
Q ss_pred HhhhhhHhhhcCChHHHHHHHHH
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~k 329 (368)
+..+..++...|++++|.+++++
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 77788889999999999998876
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.98 E-value=11 Score=37.85 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
...++..||.+..++|+.++|+++++..++. +|..+ ......+|...+..+++|.++..++.|
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke----~p~~~--~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKE----FPNLD--NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhh----CCccc--hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3567788999999999999999999988753 23211 233567788888899999998887776
No 241
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=79.77 E-value=4.4 Score=35.27 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=40.8
Q ss_pred CccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 256 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 256 ~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
...+..+.++.+|..-|...|++..|+..|+.+++-..+..|..||.+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 345667888999999999999999999999999999999999999975
No 242
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=79.48 E-value=6.6 Score=36.94 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=53.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
+...++++.|.+.++...+ +.++ ..+ ..|+.++.. .+.+.+|.-.++...+ .+|+ ...
T Consensus 141 ~L~~~R~dlA~k~l~~~~~-----~~eD-~~l----~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~~----t~~ 202 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQ-----IDED-SIL----TQLAEAWVNLATGGEKYQDAFYIFEELSD----KFGS----TPK 202 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHC-----CSCC-HHH----HHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHH
T ss_pred HHHcCCHHHHHHHHHHHHh-----cCCc-HHH----HHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccCC----CHH
Confidence 4567788888877765432 2332 223 334444433 3357888887777543 2332 235
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.++.+|.+...+|++++|.+.+.+|++
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 577889999999999999999999864
No 243
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.26 E-value=29 Score=34.28 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=82.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc------cCCccccHHH----HHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL------YHPFSVNLMQ----TREKLIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~------l~~~h~~l~~----~~~~La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
.-...|...+.+++|..|.--++.+++++++. +.+..-++.. +-..|..+|..+++-+.|+.+..+.|.
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~- 256 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN- 256 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh-
Confidence 34556777778888888877777777766542 2222223332 335688889999999999998888774
Q ss_pred HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649 292 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 361 (368)
Q Consensus 292 ~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~ 361 (368)
+.|.++ .-...-|-+...+.+|.+|-.-..-|.-++-..-|.++-...-+..-++.+..|.-.
T Consensus 257 ----lnP~~f---rnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqamiEeAiT 319 (569)
T PF15015_consen 257 ----LNPSYF---RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMIEEAIT 319 (569)
T ss_pred ----cCcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHHHHHHh
Confidence 222222 111222445556788888888777777777777666666555444444555555443
No 244
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.05 E-value=4.4 Score=26.53 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.9
Q ss_pred hhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 308 YTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 308 ~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+.||+.|...|+.+.|+..+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999884
No 245
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.93 E-value=3.4 Score=23.41 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHh
Q 017649 264 TREKLIKILMELEDWKEALAYCQL 287 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~ 287 (368)
+...|+.++...|++++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456799999999999999987653
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.24 E-value=4.4 Score=22.33 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
+...++.++...|++++|...+++++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4567888999999999999999888763
No 247
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.23 E-value=28 Score=31.78 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHH
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 328 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 328 (368)
...+.-.+|.-|...|+|++|+.+++.+...|++ ..........+..|...+..+|+.++.+.+--
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445567999999999999999999999776653 46777788888899999999998888776643
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.05 E-value=55 Score=29.89 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHhhc
Q 017649 277 DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 277 ~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i~~ 335 (368)
+-.+|+..+.+++++|... | .-..-+.....+|.+|-. +.+++.|+.+|++|-+.+.
T Consensus 88 ~~~eAv~cL~~aieIyt~~-G-rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDM-G-RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred ChHHHHHHHHHHHHHHHhh-h-HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 6666777777777766533 1 112233444556666643 3566667777776666554
No 249
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.81 E-value=29 Score=32.17 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=39.8
Q ss_pred hhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH-------------hhccccCCCCchHHHHHHHH
Q 017649 288 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE-------------ILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 288 ~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~-------------i~~~~~G~~hp~~~~l~~~L 352 (368)
+.-+|+..-+...| +-..+.-.|.+...+|+++||...++.|++ ++....|++.|.+.+....|
T Consensus 192 AfyifeE~s~k~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 192 AFYIFEELSEKTPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHhcccCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 33444444343333 234566778888999999999999999885 22233566655555544444
No 250
>PRK10941 hypothetical protein; Provisional
Probab=76.36 E-value=29 Score=32.27 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649 260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339 (368)
Q Consensus 260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G 339 (368)
.+.+..++|-.+|...++|++|+...+..+. +.|++| .....-|.++..+|.+..|..-|+.-++ .-
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~-----~~ 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQ-----FDPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVE-----QC 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHH-----hC
Confidence 3456778899999999999999999888775 456666 3344557778888888888887766554 34
Q ss_pred CCCchHHHHHHHHHHHHH
Q 017649 340 TNSPFMKELILKLEEAQA 357 (368)
Q Consensus 340 ~~hp~~~~l~~~L~~~~~ 357 (368)
|+.|...-+...+..+..
T Consensus 246 P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 246 PEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred CCchhHHHHHHHHHHHhh
Confidence 677777777777666654
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.07 E-value=13 Score=25.37 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=31.8
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 354 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~ 354 (368)
++-||..+..+|+|.+|+.+...++++ -|+++-...+...+++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHH
Confidence 567888899999999999999998873 4666666666665543
No 252
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=76.02 E-value=17 Score=26.82 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=37.0
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc--cCCCCchHHHHHHHHHHH
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEA 355 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~--~G~~hp~~~~l~~~L~~~ 355 (368)
|..+..-|.-+-..|++++|+.+|++|.+.+... .-||++.-.....++.+-
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY 59 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEY 59 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 4555666777788999999999999999987754 336666544455555443
No 253
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.96 E-value=51 Score=32.27 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=41.5
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH--hhhhHHHHHHHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQ 286 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~--~~g~~~~Al~~~~ 286 (368)
..+..++..++|..|..++..+... .+.+........+..|+.+|. +.-++++|.+++.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3455667888999999988877643 444555555666677777774 4667788888887
No 254
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.70 E-value=20 Score=32.67 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=46.3
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~ 360 (368)
..........+|.-+...|++++|.++|+.+...++.. ....+..+++.+|-++...+.
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhC
Confidence 55566777899999999999999999999996666544 456677888888877765543
No 255
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.66 E-value=29 Score=28.80 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH-HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649 261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339 (368)
Q Consensus 261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G 339 (368)
..++..++|.++....+-.. -++-+.+++.+++..||.. -..++-||.-+..+++|+.++.++..-++ .-
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~-----~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE-----TE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh-----hC
Confidence 35566777877776544332 2455667777777777774 34667788889999999999999887665 35
Q ss_pred CCCchHHHHHHHHHHH
Q 017649 340 TNSPFMKELILKLEEA 355 (368)
Q Consensus 340 ~~hp~~~~l~~~L~~~ 355 (368)
|+.+-...+.+.+++.
T Consensus 102 ~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 102 PNNRQALELKETIEDK 117 (149)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 6777787777777654
No 256
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=75.50 E-value=44 Score=34.17 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=29.1
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G 339 (368)
.|.....|..+..+|++..|++.+.....++...+-
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 556667799999999999999999888877765543
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.10 E-value=92 Score=32.52 Aligned_cols=110 Identities=11% Similarity=0.042 Sum_probs=71.4
Q ss_pred HHHHHHHHHhh-hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 221 NILSKKTLALT-SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 221 ~~l~~~a~~~~-~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
......|..+. ...++++|...+++...+.++ +...-.-..+..-|+.++...+-.. |..++++.++.++. +|..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~ 135 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHS 135 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCch
Confidence 33444444444 556899999999888776554 3222223556666788887766555 99999999998876 5555
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
+......+.+....... +++..|...+++....-.
T Consensus 136 ~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred hHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhh
Confidence 55555554433333222 788889998887766554
No 258
>PLN02789 farnesyltranstransferase
Probab=75.03 E-value=30 Score=33.06 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhc
Q 017649 262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL 317 (368)
Q Consensus 262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~ 317 (368)
.++..+.+.++...|+|++|++++.++|+.- |.-..+++..+.+....
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------VRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------CCchhHHHHHHHHHHhc
Confidence 3455556666667788888888888877641 22234455555555544
No 259
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=74.84 E-value=29 Score=35.50 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
..+.-+|..+...|++++|...+++|+++-
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 445556777778899999999999999865
No 260
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.82 E-value=19 Score=33.99 Aligned_cols=79 Identities=11% Similarity=-0.043 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHh
Q 017649 235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 314 (368)
Q Consensus 235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~ 314 (368)
+|++|+..... .|..++.....+..|+.+|...++|..|.+.+.+ ++..||......+--|+.+
T Consensus 25 ry~DaI~~l~s--------~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQ--------L~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 25 RYADAIQLLGS--------ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQ--------LGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHH--------HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhChHHHHHHHHHHHHH
Confidence 56666655432 3444565666778899999999999999887766 4567888887777778888
Q ss_pred hhcCChHHHHHHHHH
Q 017649 315 WFLGDTENAIKSMTE 329 (368)
Q Consensus 315 ~~~g~~~eA~~~l~k 329 (368)
.+.+.+.+|+..+..
T Consensus 89 Y~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 89 YKACIYADALRVAFL 103 (459)
T ss_pred HHhcccHHHHHHHHH
Confidence 888888888776543
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=74.80 E-value=18 Score=36.05 Aligned_cols=68 Identities=9% Similarity=-0.036 Sum_probs=53.2
Q ss_pred cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+++.++. ++..++.++...++++.|...+++++. -+|..+..++..|.+....|+.++|...+++|++
T Consensus 333 ld~~Da~---a~~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 333 ITTVDGK---ILAIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cCCCCHH---HHHHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455543 455677778888889999999998875 3455667788889999999999999999999764
No 262
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.70 E-value=18 Score=26.93 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=40.4
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC---------chHHHHHHHHHHHHHHHhhhhc
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS---------PFMKELILKLEEAQAEASYKLS 364 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h---------p~~~~l~~~L~~~~~el~~~~~ 364 (368)
|...-+.|.-+-..|..++|+.+|+++++++.....-.. ...+.+..+|.....++.++..
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~ 77 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQ 77 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555668888999999999888877655443 2345666777777777776643
No 263
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=74.37 E-value=2.5 Score=27.79 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=18.7
Q ss_pred cCccCCCCCccceeecCCCCccccCCCCCCC
Q 017649 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 208 (368)
Q Consensus 178 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 208 (368)
-|+|+ +|++.+..++....+.|+.||...
T Consensus 3 ~y~C~--~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 3 EYKCA--RCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred EEECC--CCCCEEEECCCCCceECCCCCCeE
Confidence 35675 566666555444468888888754
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.19 E-value=17 Score=32.31 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=45.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
.+.|..++..++++.|+.-+.+++.+ ++..-.++..-|.+|-.+..|++|++-++++++.
T Consensus 138 ~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 138 SNRAAALIKLRKWESAIEDCSKAIEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHhhhHHHHHHHHHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 45667777888999999988887764 3334455556788899999999999988887753
No 265
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.88 E-value=3.6 Score=26.91 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
+.+||.+|+.+|+.+.|.+..+.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999998887774
No 266
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.20 E-value=47 Score=34.59 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=69.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
++.|...+.-.+|..+++.|+..+.... -+..+........+|+-+|..+.+.++|+++.+.+-+ + .+-.|..
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~--~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~----~-d~~~~l~ 430 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDII--SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE----V-DRQSPLC 430 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----h-ccccHHH
Confidence 4556666666788888888877665321 1112344577888999999999999999998777643 2 2334443
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
- +.+-++....|.-++|+..+.+...++.-
T Consensus 431 q---~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 431 Q---LLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred H---HHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 3 33444455668889999988887776655
No 267
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.15 E-value=16 Score=27.03 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc-CCCCchHHH-HHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE-LILKLEE 354 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~-G~~hp~~~~-l~~~L~~ 354 (368)
.|..+..-|.-.-..|++++|+.+|.+|++.+.... +...|..++ +..++.+
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~e 58 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISE 58 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 355666677778889999999999999999887532 333344444 3444433
No 268
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.88 E-value=7.6 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
.+..||..+..+|+|.+|.+++..++++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3567888899999999999999998863
No 269
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=71.78 E-value=17 Score=31.95 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
.+..-+..|+.+..++|++.+|..++++++... | ...|. .+.-+++..+..++..+|...+++..+--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~---f-A~d~a---~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGI---F-AHDAA---MLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c-CCCHH---HHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 345566779999999999999999999987632 1 23333 34668888999999999999998877644
No 270
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.60 E-value=69 Score=32.35 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=56.2
Q ss_pred HhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc
Q 017649 273 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 343 (368)
Q Consensus 273 ~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp 343 (368)
..++++.||....++.++... --.....+|-.+.-||.+..-.|+..|+++.++-|++..++.+ |||
T Consensus 456 f~qn~lnEaK~~l~e~Lkman--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~--Di~ 522 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMAN--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP--DIP 522 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC--Cch
Confidence 357899999999999998773 2256677888889999999999999999999999999988884 554
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=70.39 E-value=41 Score=27.75 Aligned_cols=96 Identities=23% Similarity=0.215 Sum_probs=63.1
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHh
Q 017649 229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 308 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~ 308 (368)
.+...|++++|...+.+++.. .+...............+...+++.+|+....+.+...... ....+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHH
Confidence 345677888888888777431 11112233333444444667788888888888777655433 445567
Q ss_pred hhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 309 TCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 309 ~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
.++..+...+.+.+|...+.+++.....
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 7788888888888898888888876654
No 272
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=69.80 E-value=8 Score=33.65 Aligned_cols=51 Identities=18% Similarity=-0.056 Sum_probs=42.1
Q ss_pred hcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649 295 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 345 (368)
Q Consensus 295 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~ 345 (368)
.-|...|.....+.+|..-|..+|+++-|+..-++|++-+..+.|.+||.+
T Consensus 131 ~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 131 SQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp -S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 345778888889999999999999999999999999999999999999953
No 273
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=68.46 E-value=54 Score=26.67 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhhhhhHHhhcCC---CChHH-HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 275 LEDWKEALAYCQLTIPVYQRVYPQ---FHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 275 ~g~~~~Al~~~~~~l~~~e~~~g~---~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
.|-|++|..-|+++.++.+.+=+. +|--. +..+--|+..+..+|+|++++..-.+|+.-+.+.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 478999999999999988766443 23222 4566678888899999999999999998877665
No 274
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=67.91 E-value=1.1e+02 Score=32.01 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=27.4
Q ss_pred hhhHhhhcCChHHHHHHHH---------------HHHHhhccccCCCCchHHHHH
Q 017649 310 CGKLEWFLGDTENAIKSMT---------------EAVEILRITHGTNSPFMKELI 349 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~---------------kAl~i~~~~~G~~hp~~~~l~ 349 (368)
.|.+-..+|+...|+..|. ++.+++++.||.+.. +++.+
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT-~keML 717 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT-YKEML 717 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 3555666788888888654 577889999998654 44433
No 275
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.89 E-value=33 Score=25.12 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=37.6
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc-CCCCchHHHH-HHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKEL-ILKLEE 354 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~-G~~hp~~~~l-~~~L~~ 354 (368)
.|+.+..-|.-.-..|++++|..+|..|++.+.... +...|..++. ..++.+
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~e 58 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQ 58 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 456666677777888999999999999999887643 5566666553 344433
No 276
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=67.10 E-value=76 Score=33.30 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=20.8
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
-.+++-+.+.+.+|..++|+.++++|++.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 345666667777777777777777777654
No 277
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=67.09 E-value=3 Score=40.93 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCEEEEEEccCCCCCCeeEEeccCCCC
Q 017649 113 GRLAVVRAVQHVPKGAEVLISYIETAG 139 (368)
Q Consensus 113 ~~~~~~~a~~~i~~geel~~~Y~~~~~ 139 (368)
+..+..+|+|+|++|+||.+=|++.+.
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchH
Confidence 457899999999999999999987653
No 278
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=66.97 E-value=41 Score=36.80 Aligned_cols=104 Identities=17% Similarity=0.112 Sum_probs=76.1
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
..+.+.+.|++..|++.+.++. .+.|.|.. .+...+......|.|++|+..+...+.....-. +.-..++-
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs-----~LrP~s~y---~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE 672 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKAS-----LLRPLSKY---GRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAE 672 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhH-----hcCcHhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHH
Confidence 3445667788888888876653 34454443 355666677788999999998888876654333 33345677
Q ss_pred HHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc
Q 017649 306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 338 (368)
Q Consensus 306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~ 338 (368)
.+..+++.+...|=+..|.++++++++++....
T Consensus 673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 888889999999999999999999998877663
No 279
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=66.72 E-value=81 Score=30.43 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhhhhhHHhhcCCCChHHH-HHH-hhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHH
Q 017649 276 EDWKEALAYCQLTIPVYQRVYPQFHPLLG-LQY-YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353 (368)
Q Consensus 276 g~~~~Al~~~~~~l~~~e~~~g~~hp~~~-~~l-~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~ 353 (368)
....+.+.-.+..+..|+.-.|-..|... ... -.++.+ ..+..++. .-+.-+...+|++||.++.+...++
T Consensus 180 ~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L---~~~l~~~~----~~l~~l~~~~~~~~P~v~~l~~~i~ 252 (362)
T TIGR01010 180 KEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL---EGELIRVQ----AQLAQLRSITPEQNPQVPSLQARIK 252 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHhhCCCCCCchHHHHHHHH
Confidence 34445555556667777777777777642 111 112222 22233333 2233344578889999999999998
Q ss_pred HHHHHHhhhh
Q 017649 354 EAQAEASYKL 363 (368)
Q Consensus 354 ~~~~el~~~~ 363 (368)
.++..+..+.
T Consensus 253 ~l~~~i~~e~ 262 (362)
T TIGR01010 253 SLRKQIDEQR 262 (362)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 280
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.40 E-value=5.1 Score=38.23 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 298 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~ 298 (368)
......-.|......|.+++|++.+-.++.+ ++.....+-.=+.++..++.+..|++=|..++++-
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------ 178 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------ 178 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccC------
Confidence 3344455677788999999999888766543 33344444455667888888888888888777643
Q ss_pred CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
|..+..+.-=|.....+|..++|...|..|.+
T Consensus 179 --~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 179 --PDSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred --cccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 22222222223444455666666666665543
No 281
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.38 E-value=17 Score=34.34 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
.+..+.+-+....|++++|++-++.+++ +|++.|.++ +++|..+...+++..|+++.-+.++
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlq-----vsGyqpllA---YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQ-----VSGYQPLLA---YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHh-----hcCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455667777788999999988888776 578888876 7889899999999999998777654
No 282
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=66.04 E-value=4.3 Score=28.20 Aligned_cols=28 Identities=25% Similarity=0.652 Sum_probs=16.2
Q ss_pred CccCCCCCccceeecCCCCc--cccCCCCC
Q 017649 179 YRCKDDGCSGFLLRDSDDKG--FTCQQCGL 206 (368)
Q Consensus 179 ~~C~~~~C~g~~~~~~~~~~--~~C~~C~~ 206 (368)
..|+.++|.+++...+.... ..|..|+.
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~ 48 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGT 48 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCS
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCC
Confidence 48998899888876665554 78888875
No 283
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.80 E-value=14 Score=35.51 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=49.3
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHH
Q 017649 268 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAI 324 (368)
Q Consensus 268 La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~ 324 (368)
+++-...++++++|..-+..+..+...+||..|-..+-.+|..|+.++.+++.+.++
T Consensus 47 ~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 47 AGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred hhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444456678999999999999999999999999999999999999999888776654
No 284
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.77 E-value=24 Score=34.79 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
.-.|.+++.-+|||..|++.....--.-..+|...-+-....++.+|-.|..+++|.+|++.+...+--+.++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777788999999998866542222233433333334567889999999999999999999877655544
No 285
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=65.42 E-value=9.4 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
.+.+...|...|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 56788899999999999998877543
No 286
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.32 E-value=1.4e+02 Score=29.19 Aligned_cols=110 Identities=15% Similarity=-0.003 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h 300 (368)
+....++......|+|.+|+++..+.-+ |...+.+ .+...+.+....||++.|-.|..++-+ .+.+
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae------~~e~p~l--~~l~aA~AA~qrgd~~~an~yL~eaae------~~~~ 150 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAE------HGEQPVL--AYLLAAEAAQQRGDEDRANRYLAEAAE------LAGD 150 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhh------cCcchHH--HHHHHHHHHHhcccHHHHHHHHHHHhc------cCCC
Confidence 3334455556678999999887655322 2222322 233455666778999999888776654 2333
Q ss_pred hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 350 (368)
Q Consensus 301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~ 350 (368)
+.+ ......+.++..+|++..|+..+.++++ -+|.||.+..+..
T Consensus 151 ~~l-~v~ltrarlll~~~d~~aA~~~v~~ll~-----~~pr~~~vlrLa~ 194 (400)
T COG3071 151 DTL-AVELTRARLLLNRRDYPAARENVDQLLE-----MTPRHPEVLRLAL 194 (400)
T ss_pred chH-HHHHHHHHHHHhCCCchhHHHHHHHHHH-----hCcCChHHHHHHH
Confidence 433 2344567788889999999888887765 3677776655543
No 287
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.24 E-value=26 Score=34.68 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhh----ccc-CCccccHHHHHHHHHHHHHhhhh---HHHHHHHHHhhhhhHH
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQK----KLY-HPFSVNLMQTREKLIKILMELED---WKEALAYCQLTIPVYQ 293 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~----~~l-~~~h~~l~~~~~~La~~~~~~g~---~~~Al~~~~~~l~~~e 293 (368)
.++++|..++....|.+|+.++-.+.+.+. ++| ..+|+.++.. .+..+|..+.+ ...|..-+.++-..++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnL--DIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNL--DIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhc--chhheehhhcccccCChHHHHHHHHHHhhh
Confidence 356677777777788888877665554432 111 1123333322 23344544432 2233333333333333
Q ss_pred hhc-----------CCCChHHHHHHh-h--hhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 294 RVY-----------PQFHPLLGLQYY-T--CGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 294 ~~~-----------g~~hp~~~~~l~-~--La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
+.| |+.+|.+++.+. . -|.+.+.+|+..+|...++.|..-+
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 333 556687765432 2 2888999999999999999877543
No 288
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=65.10 E-value=23 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=30.1
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G 339 (368)
.|..+.+-|.-.-..|++++|+.+|.+|++.+.....
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3556667777788899999999999999998876644
No 289
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=64.88 E-value=37 Score=24.61 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
.+..+..-|.-.-..|++++|+.+|.+|++.+...
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44555566666777899999999999999977764
No 290
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.22 E-value=23 Score=32.22 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH-HhhhhHHHHHHHHHhhhhhHH
Q 017649 237 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELEDWKEALAYCQLTIPVYQ 293 (368)
Q Consensus 237 ~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~-~~~g~~~~Al~~~~~~l~~~e 293 (368)
+.|.+.|+.+..+...-++|.||..+...-+.+.-| -.+|+-++|+++.+.+++-.-
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 567788888888877779999999988887777655 447999999999998876443
No 291
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.88 E-value=33 Score=25.25 Aligned_cols=47 Identities=34% Similarity=0.181 Sum_probs=34.0
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH-HHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE-LILKL 352 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~-l~~~L 352 (368)
.|+.+.+-|.-.-..|++++|..+|..|++.+... .+|...+ ++.++
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e---kn~~~k~~i~~K~ 52 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT---SNETMDQALQTKL 52 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh---cChhhHHHHHHHH
Confidence 45556666666778899999999999999988884 4444444 34555
No 292
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.53 E-value=16 Score=36.74 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=65.6
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCc---cccHHH--HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-CCChH-
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SVNLMQ--TREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPL- 302 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~---h~~l~~--~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g-~~hp~- 302 (368)
.+..|++..|.+++...-.- -++. -+.+.. ..++|+-+...+|.|..+..++.+++......+- ...|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~----~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIH----KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHhcchHHHHHHHHhcccc----cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 34557777777665432111 1111 112222 2256777777888888888888888753322222 11221
Q ss_pred --------HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 303 --------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 303 --------~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
.-..+|++|.++...|+..+|-.-+.+|..++..-
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 12467899999999999999999999999988754
No 293
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=63.33 E-value=53 Score=26.80 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH-------HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 266 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-------LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 266 ~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~-------~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
..+|......+++-.++-+|++++...+..--..... -.....|||..+..+|+.+-.++|++-|-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777788899999999999998887773222211 235778999999999999999999987765
No 294
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.23 E-value=1.6e+02 Score=28.97 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=58.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
..+.|.-+....+|.+|+..+.++|.. .|+|+. ++..=++++..+|+|+.|...++++++ +.|.+ ..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~~~N~K---ALyRrG~A~l~~~e~~~A~~df~ka~k----~~P~N-ka 326 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLEL-----DPNNVK---ALYRRGQALLALGEYDLARDDFQKALK----LEPSN-KA 326 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhc-----CCCchh---HHHHHHHHHHhhccHHHHHHHHHHHHH----hCCCc-HH
Confidence 344555555666788888888777754 455554 556678899999999999999999886 34555 44
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
....+..|.+-... ..+...+.|.+.+.
T Consensus 327 ~~~el~~l~~k~~~--~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 327 ARAELIKLKQKIRE--YEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 44444444332211 12333455555554
No 295
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.74 E-value=56 Score=33.20 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=50.5
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCC-hHHHHHHHHHHHH
Q 017649 268 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVE 332 (368)
Q Consensus 268 La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~-~~eA~~~l~kAl~ 332 (368)
++.++..+|+-..|..++...++- +..--.++-.+..++|++|.++|.++. ..+|..++.+|-+
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~ 519 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE 519 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 445666788888888877776654 344446666777899999999999988 9999999999976
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.45 E-value=1.1e+02 Score=28.66 Aligned_cols=111 Identities=15% Similarity=0.053 Sum_probs=71.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh-hHHhhc-----
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP-VYQRVY----- 296 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~-~~e~~~----- 296 (368)
....|......|+++.|...+.++.... .+.+.....+...-++.....|+-.+|+...+..+. ......
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~----~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLN----PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccC----CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 3445555667889988887766654321 111111233444556778888999999998887777 333221
Q ss_pred --------------------CCCChHHHHHHhhhhhHhhhc------CChHHHHHHHHHHHHhhccc
Q 017649 297 --------------------PQFHPLLGLQYYTCGKLEWFL------GDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 297 --------------------g~~hp~~~~~l~~La~l~~~~------g~~~eA~~~l~kAl~i~~~~ 337 (368)
.......+..+..+|+....+ +..+++.+.|.+|..+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 112244567777888888777 88899999999998765433
No 297
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.40 E-value=1.2e+02 Score=28.56 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=25.5
Q ss_pred HHhhhcCChHHHHHHHHHHHHH----hhcccCCccccHHHHHHHHHHHHHhhhhHH
Q 017649 228 LALTSCGNHQEVVSTYKMIEKL----QKKLYHPFSVNLMQTREKLIKILMELEDWK 279 (368)
Q Consensus 228 ~~~~~~g~~~eA~~l~~~~l~~----~~~~l~~~h~~l~~~~~~La~~~~~~g~~~ 279 (368)
.......++++|+..|++++.. .++++..- -.+..+|+++|...|++.
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEq----E~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQ----EATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHH----HHHHHHHHHHHHhcCCcc
Confidence 3333445677777777777654 11221111 123456777777766553
No 298
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.18 E-value=37 Score=31.79 Aligned_cols=70 Identities=14% Similarity=-0.007 Sum_probs=47.7
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
||.=.+-...|+.+|+.+|++..|..-|++++.+ -++.|.+...+-+.=..........+|...+++|+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3333456788999999999999999988888753 356777654443332222223345788888888875
No 299
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.58 E-value=86 Score=30.12 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=60.2
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHH-HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLM-QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~-~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~ 304 (368)
....++...+|..|+..|...++... .++++- ..+.|=|.+-..+|+|..|+.=|.+++. ..|...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc-----~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--------~~P~h~ 153 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKC-----ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--------LKPTHL 153 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcC-----CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--------cCcchh
Confidence 34444444467778877777665422 133332 3455666666778999999998888875 234445
Q ss_pred HHHhhhhhHhhhcCChHHHHHHHHHH
Q 017649 305 LQYYTCGKLEWFLGDTENAIKSMTEA 330 (368)
Q Consensus 305 ~~l~~La~l~~~~g~~~eA~~~l~kA 330 (368)
..++.-|+.+..+.++.+|..+.++.
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 66777788888888887777775543
No 300
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.41 E-value=93 Score=31.46 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=68.3
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
.+.++++.||.....+.+++.. --..+..+...+.-|+.+....|+-.++..+.+.+++...++ +++|+-.+...-
T Consensus 455 af~qn~lnEaK~~l~e~Lkman--aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si 530 (629)
T KOG2300|consen 455 AFKQNDLNEAKRFLRETLKMAN--AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSI 530 (629)
T ss_pred HHHhccHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHH
Confidence 3456788888877777766531 111234445556667888888999999999999999888776 688888888888
Q ss_pred hhhHhhhcCC--hHHHHHHHH
Q 017649 310 CGKLEWFLGD--TENAIKSMT 328 (368)
Q Consensus 310 La~l~~~~g~--~~eA~~~l~ 328 (368)
+..++...|. .+++.+.+.
T Consensus 531 ~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 531 LTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHhCcchhhHHHHHHH
Confidence 8889988887 444444443
No 301
>PRK11906 transcriptional regulator; Provisional
Probab=60.40 E-value=66 Score=32.22 Aligned_cols=78 Identities=13% Similarity=0.005 Sum_probs=52.7
Q ss_pred ccccHHHHHHHHHHHHHhh---------hhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHH
Q 017649 257 FSVNLMQTREKLIKILMEL---------EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 327 (368)
Q Consensus 257 ~h~~l~~~~~~La~~~~~~---------g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l 327 (368)
-+|....++-.++.++... .+..+|.++.+++++ .++..| ..++.+|.+.+..++++.|...+
T Consensus 290 ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve-----ld~~Da---~a~~~~g~~~~~~~~~~~a~~~f 361 (458)
T PRK11906 290 IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD-----ITTVDG---KILAIMGLITGLSGQAKVSHILF 361 (458)
T ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh-----cCCCCH---HHHHHHHHHHHhhcchhhHHHHH
Confidence 3555666666677666532 234456666666665 345555 56788999999999999999999
Q ss_pred HHHHHhhccccCCCCchHHH
Q 017649 328 TEAVEILRITHGTNSPFMKE 347 (368)
Q Consensus 328 ~kAl~i~~~~~G~~hp~~~~ 347 (368)
++|.. +.|+.+...-
T Consensus 362 ~rA~~-----L~Pn~A~~~~ 376 (458)
T PRK11906 362 EQAKI-----HSTDIASLYY 376 (458)
T ss_pred HHHhh-----cCCccHHHHH
Confidence 99985 4555554433
No 302
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.37 E-value=66 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 252 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~ 252 (368)
....+...|...-..|++++|+..|..++.....
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3445666777788899999999999998886544
No 303
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.92 E-value=47 Score=31.29 Aligned_cols=68 Identities=21% Similarity=0.137 Sum_probs=51.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 298 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~ 298 (368)
+...+..+...|.+.+|+++.++++.. +| ..-...-.|+.++...||--.|...+.+.-...++-+|-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-----dp---L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi 349 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-----DP---LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGI 349 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-----Ch---hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCC
Confidence 344556677889999999999988653 33 233344557788889999889999999988888888884
No 304
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=59.75 E-value=55 Score=23.99 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc-ccCCCCchHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI-THGTNSPFMKELI 349 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~-~~G~~hp~~~~l~ 349 (368)
.|..+...|.-.-..|++++|...|..|++.+.. ..+...|..++..
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~i 52 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAV 52 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4555666666667779999999999999998876 4466667666643
No 305
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=59.73 E-value=64 Score=35.44 Aligned_cols=99 Identities=22% Similarity=0.095 Sum_probs=65.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~-~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
....|.......+|++|++..+++++ +.|+|+. +.-.|+.++..+|. .++|-+.+..+.++- |
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk-----~dpdNYn---A~vFLGvAl~sl~q~le~A~ehYv~AaKld--------p 68 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLK-----EDPDNYN---AQVFLGVALWSLGQDLEKAAEHYVLAAKLD--------P 68 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHh-----cCCCcch---hhhHHHHHHHhccCCHHHHHHHHHHHHhcC--------h
Confidence 34445555677789999999988876 4566654 34458888888876 999999888877532 3
Q ss_pred HHHHHHhhhhhHhhh---cCChHHHHHHHHHHHHhhccc
Q 017649 302 LLGLQYYTCGKLEWF---LGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 302 ~~~~~l~~La~l~~~---~g~~~eA~~~l~kAl~i~~~~ 337 (368)
.-..+.--|+.+|.. .-.++++-+.+++++.+++..
T Consensus 69 dnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 69 DNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 (1238)
T ss_pred hhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence 334445555555543 344566777777776665543
No 306
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=59.38 E-value=4.9 Score=25.96 Aligned_cols=29 Identities=28% Similarity=0.789 Sum_probs=15.2
Q ss_pred ccCCCCCccc-eeecCCCCccccCCCCCCCCH
Q 017649 180 RCKDDGCSGF-LLRDSDDKGFTCQQCGLVRSK 210 (368)
Q Consensus 180 ~C~~~~C~g~-~~~~~~~~~~~C~~C~~~~~~ 210 (368)
.|| +|+.. +..+.....+.|..||..++.
T Consensus 2 ~Cp--~Cg~~~~~~D~~~g~~vC~~CG~Vl~e 31 (43)
T PF08271_consen 2 KCP--NCGSKEIVFDPERGELVCPNCGLVLEE 31 (43)
T ss_dssp SBT--TTSSSEEEEETTTTEEEETTT-BBEE-
T ss_pred CCc--CCcCCceEEcCCCCeEECCCCCCEeec
Confidence 465 34332 334444556788888876643
No 307
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.43 E-value=1.6e+02 Score=27.52 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHH
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 328 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 328 (368)
++.++.++...++|.-.+.++.++++ .+|+..|.+ ...||.+....|+.+.|..+++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~----~~~e~~p~L---~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQEPQL---LSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH----hCCcccHHH---HHHHHHHHHhcccHHHHHHHHH
Confidence 34444555555555555555555444 344444543 2444555555555555555555
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=58.39 E-value=67 Score=34.63 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=57.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh----hhHHhhcCCCChHHHH-
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI----PVYQRVYPQFHPLLGL- 305 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l----~~~e~~~g~~hp~~~~- 305 (368)
.++|.|++|.++-+ +.+...+-.++++-|+-+...+|.+.|++|++++- ++.+ .+-.+-|.+-.
T Consensus 837 Qs~g~w~eA~eiAE----------~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~r-mL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAE----------TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFR-MLKEYPKQIEQY 905 (1416)
T ss_pred HhcccHHHHHHHHh----------hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHH-HHHhChHHHHHH
Confidence 35556665554432 23344556677888888888899999999999863 2222 12222222211
Q ss_pred --------HHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 306 --------QYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 306 --------~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
.+.=.|.-+-..|+.+.|+.+|..|.+.+..
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 1111244445679999999999998876653
No 309
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=57.88 E-value=1.3e+02 Score=29.40 Aligned_cols=75 Identities=8% Similarity=0.020 Sum_probs=44.8
Q ss_pred ccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh---cCChHHHHHHHHH
Q 017649 253 LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF---LGDTENAIKSMTE 329 (368)
Q Consensus 253 ~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~---~g~~~eA~~~l~k 329 (368)
.++........+..+|.-.|.+.++|+.-+.+.+..-.. ...-.+.+|.+ .+..|-++.. .|+.++|+..+.+
T Consensus 132 rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i---~~~yafALnRrn~~gdre~Al~il~~ 207 (374)
T PF13281_consen 132 RLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNI---KFQYAFALNRRNKPGDREKALQILLP 207 (374)
T ss_pred hhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHH---HHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 344333444556667888899999998777764443221 00012233333 3455556655 7999999988877
Q ss_pred HH
Q 017649 330 AV 331 (368)
Q Consensus 330 Al 331 (368)
++
T Consensus 208 ~l 209 (374)
T PF13281_consen 208 VL 209 (374)
T ss_pred HH
Confidence 64
No 310
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=57.66 E-value=5.7 Score=25.31 Aligned_cols=28 Identities=32% Similarity=0.825 Sum_probs=14.0
Q ss_pred CccCCCCCccceee----cCCCCccccCCCCCCC
Q 017649 179 YRCKDDGCSGFLLR----DSDDKGFTCQQCGLVR 208 (368)
Q Consensus 179 ~~C~~~~C~g~~~~----~~~~~~~~C~~C~~~~ 208 (368)
.+|. .|.+++-| +.+++.|+|..|+...
T Consensus 3 ~rC~--~C~aylNp~~~~~~~~~~w~C~~C~~~N 34 (40)
T PF04810_consen 3 VRCR--RCRAYLNPFCQFDDGGKTWICNFCGTKN 34 (40)
T ss_dssp -B-T--TT--BS-TTSEEETTTTEEEETTT--EE
T ss_pred cccC--CCCCEECCcceEcCCCCEEECcCCCCcC
Confidence 3564 46555533 4456789999999743
No 311
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.28 E-value=59 Score=31.31 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649 224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 303 (368)
Q Consensus 224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~ 303 (368)
...+..+...|++.+|-..+.+++..+ |. +++ +...--.++...|+.... ....++++|...+..
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~-----Pt--Dll-a~kfsh~a~fy~G~~~~~-------k~ai~kIip~wn~dl 171 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDY-----PT--DLL-AVKFSHDAHFYNGNQIGK-------KNAIEKIIPKWNADL 171 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhC-----ch--hhh-hhhhhhhHHHhccchhhh-------hhHHHHhccccCCCC
Confidence 334555667777777766666665431 11 111 111111233334443322 334445555433332
Q ss_pred ---HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 304 ---GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 304 ---~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
....-.++--+.+.|-|.+|++.-.+|++|=+
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~ 206 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINR 206 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCC
Confidence 21111222223455677777777777666544
No 312
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.14 E-value=1.5e+02 Score=27.52 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh---hhhHHHHHHHHHhhhhhHH
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQ 293 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~---~g~~~~Al~~~~~~l~~~e 293 (368)
.-.+.++.+.+.|+|++|.--++.++- ..|+++.+.. .++.++.- ..++.-|.+|+.+++++..
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll-----~~P~n~l~f~---rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLL-----IQPFNPLYFQ---RLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHH-----cCCCcHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 334556677888899998877776642 3455554433 34444433 4577788999999987553
No 313
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.94 E-value=1.9e+02 Score=28.20 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=34.4
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 288 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~ 288 (368)
.+.-|++++|...|+-+... ++++ ..+--+||-++..+|.|.+|.....++
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~-------~~~~-~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNK-------DDAP-AELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHhhccHHHHHHHHHHHhcc-------CCCC-cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 45678999999888765431 1111 233446888888999999987765543
No 314
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=56.36 E-value=20 Score=35.04 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 278 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 278 ~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
..+|++|++++.. .--|.....+|-++..||+++-... .+=.++|++|-+|+....+..|..+.+++.+|
T Consensus 334 ~~~Al~yL~kA~d---~ddPetWv~vAEa~I~LGNL~d~eS--~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 334 IKKALEYLKKAQD---EDDPETWVDVAEAMIDLGNLYDNES--KEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHHH---S--TTHHHHHHHHHHHHHHH-SSHH--H-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHHhhc---cCChhHHHHHHHHHhhhhcccccch--HHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 3456666665554 2233344445666667776663322 34466899999999999999999999988776
No 315
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=55.66 E-value=56 Score=23.73 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=32.1
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc-CCCCchHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH-GTNSPFMKE 347 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~-G~~hp~~~~ 347 (368)
.+..+..-|.-.-..|++++|..+|.+|++.+.... ....|..+.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~ 50 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKE 50 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 345566667777788999999999999999887653 223444433
No 316
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=55.51 E-value=18 Score=20.83 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649 265 REKLIKILMELEDWKEALAYCQLTI 289 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l 289 (368)
.+.+...|...|++++|.+++.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4668888999999999999988764
No 317
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=55.45 E-value=58 Score=23.48 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=27.4
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 338 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~ 338 (368)
+..+.+-|.-.-..|++++|+.+|..|++.+....
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 44555566667778999999999999999877654
No 318
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.81 E-value=1.5e+02 Score=28.34 Aligned_cols=71 Identities=15% Similarity=0.014 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh---HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 259 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP---LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 259 ~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp---~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
-.++..+..||.+|-.-++|..|...+ .....--|+.-. .....+-++|++|...++..+|+.+..+|-=.
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L----~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil 173 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVL----VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASIL 173 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH----hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 345678899999999999999886643 222222232211 23456778999999999999999998887633
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.79 E-value=2.9e+02 Score=30.08 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=70.0
Q ss_pred HHHHHHHHhhhcCC--hHHHHHHHHHHHHHhhcccC--CccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649 222 ILSKKTLALTSCGN--HQEVVSTYKMIEKLQKKLYH--PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 297 (368)
Q Consensus 222 ~l~~~a~~~~~~g~--~~eA~~l~~~~l~~~~~~l~--~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g 297 (368)
.....+..+..+|. +++....+..+.. +.++ +-|-+.+.++..+..++.. ++.+..-....+..-...-+
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~---q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~ 612 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIRE---QHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTP 612 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhccc
Confidence 34455666677772 3333333333322 1121 2345566777777776665 44444444555554444444
Q ss_pred CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHH
Q 017649 298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 348 (368)
Q Consensus 298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l 348 (368)
..+-..+.. ..||+++...|++++|...+.+....+.... .|+++.--
T Consensus 613 ~~~~~~~~~-~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~--~~~~~~a~ 660 (894)
T COG2909 613 QPLLSRLAL-SMLAELEFLRGDLDKALAQLDELERLLLNGQ--YHVDYLAA 660 (894)
T ss_pred chhHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC--CCchHHHH
Confidence 444444333 7899999999999999999998888777664 66666443
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.76 E-value=90 Score=27.21 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh----hHHHHHHHHHhhhhhHHh
Q 017649 236 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE----DWKEALAYCQLTIPVYQR 294 (368)
Q Consensus 236 ~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g----~~~~Al~~~~~~l~~~e~ 294 (368)
+++|++-++.++.+ +|....++.+|+.+|...+ +..+|.++++++.+-+++
T Consensus 51 iedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 51 IEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 34555555555544 4556677888888887664 334566666666655553
No 321
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=54.60 E-value=1.2e+02 Score=24.81 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=64.9
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
....+++++++..+...+...... .......++..+...+++..|..+....+..... .......
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~ 241 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYN 241 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhh
Confidence 345567788888777766543221 3455677888888888999999988888775543 3344556
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 310 CGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
++..+...+.+.++...+.+++.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666666667899999999998876655
No 322
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.90 E-value=1.4e+02 Score=25.44 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=39.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 289 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l 289 (368)
+++.+......++.+++..++..+ +++.|.++.+ ...-+.+++..|+|.+|+.+++.+.
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~AL-----rvLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDAL-----RVLRPEFPEL---DLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHH-----HHhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344444445666777777766543 3566765543 3445667888999999999988753
No 323
>PF10867 DUF2664: Protein of unknown function (DUF2664); InterPro: IPR022614 The proteins in this entry belong to the Herpesviridae UL96 family. Currently no function is known.
Probab=53.51 E-value=14 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHhhccccCCCCchHHHHHHHHHHHH
Q 017649 331 VEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 331 l~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
.+.+...||++||.+..-......+.
T Consensus 10 ~~fL~~alG~~HpLt~~Q~ir~~~a~ 35 (89)
T PF10867_consen 10 HQFLRRALGEQHPLTSHQGIRTMRAA 35 (89)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 35677889999999876444444443
No 324
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=53.36 E-value=2.4e+02 Score=29.54 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=67.2
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 311 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La 311 (368)
+..+|++|++-|+.++.+ .++|..+ +..|+-+-..+|+++-..+--.+.++. -|..-..+..+|
T Consensus 87 ~dK~Y~eaiKcy~nAl~~-----~~dN~qi---lrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~A 150 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI-----EKDNLQI---LRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFA 150 (700)
T ss_pred hhhhHHHHHHHHHHHHhc-----CCCcHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHH
Confidence 445789999999888764 4555544 456777777788887665543444432 233334566778
Q ss_pred hHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 312 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
..++..|.+..|.+.+..-..... .+++.-.+.....+|
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHH
Confidence 888889999999988777665554 455554555555554
No 325
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=53.20 E-value=1.4e+02 Score=28.00 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 299 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~ 299 (368)
+..+...++.+...|+++.+++.+++... .+|.+- ..+..|+.+|...|+...|+..|++.-.....-+|..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~-----~dp~~E---~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE-----LDPYDE---PAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh-----cCccch---HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 44556677778888888888887776654 344443 4566789999999999999999999887666666643
No 326
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=53.14 E-value=62 Score=31.49 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh-----HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp-----~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
...+.|..+|.+++++. +|+..+...+.+-+++++ ++....+-||..+....++.+|-..+.+|.--.
T Consensus 178 ~iaNlL~~iY~Rl~~~~----l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c 250 (413)
T COG5600 178 YIANLLFQIYLRLGRFK----LCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQC 250 (413)
T ss_pred HHHHHHHHHHHHhccHH----HHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 34466788898888875 455566666667778877 233455678999999999999999999887533
No 327
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=52.51 E-value=94 Score=28.44 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhhHHhhcCC--CChHHHHHHhh-hhhHhhhc-----CC-----hHHHHHHHHHHHHhhccccCCCCchHH
Q 017649 280 EALAYCQLTIPVYQRVYPQ--FHPLLGLQYYT-CGKLEWFL-----GD-----TENAIKSMTEAVEILRITHGTNSPFMK 346 (368)
Q Consensus 280 ~Al~~~~~~l~~~e~~~g~--~hp~~~~~l~~-La~l~~~~-----g~-----~~eA~~~l~kAl~i~~~~~G~~hp~~~ 346 (368)
+-..+|..++.+....+-| .++..-+.+.+ -|..+..+ |. .+.|...|++|+++....+.|.||+..
T Consensus 91 EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirL 170 (244)
T smart00101 91 ELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRL 170 (244)
T ss_pred HHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH
Confidence 3445788888877655433 33333333333 35555433 21 357889999999999889999999998
Q ss_pred HHHHHHHHHH
Q 017649 347 ELILKLEEAQ 356 (368)
Q Consensus 347 ~l~~~L~~~~ 356 (368)
.+.-+..--.
T Consensus 171 gLaLN~SVF~ 180 (244)
T smart00101 171 GLALNFSVFY 180 (244)
T ss_pred HHHHHHHHHH
Confidence 8776654443
No 328
>PF12854 PPR_1: PPR repeat
Probab=52.50 E-value=24 Score=21.28 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHh
Q 017649 263 QTREKLIKILMELEDWKEALAYCQL 287 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~ 287 (368)
.+++.|...|.+.|++++|.++..+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4567789999999999999998764
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=52.44 E-value=1.5e+02 Score=31.04 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHH-hhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 260 NLMQTREKLIKILM-ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 260 ~l~~~~~~La~~~~-~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
.=+.++..|+.++. ...++++|..+..+++...++ +......-..-+-++.++...+... |...+.++++..+.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 33567778999887 578999999999999988877 4443333444455688887777666 99999998887766
No 330
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=52.07 E-value=1.9e+02 Score=26.56 Aligned_cols=107 Identities=15% Similarity=0.029 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-----hhHH---HHHHHHHhhhhhHH
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWK---EALAYCQLTIPVYQ 293 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-----g~~~---~Al~~~~~~l~~~e 293 (368)
.++..+-..+..+++++|+....+.+. ++|.|+.+--+....+..+... .|-. +|..-.+.++
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~-----lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i---- 143 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIR-----LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELV---- 143 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH-----hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHH----
Confidence 344455556777889888887776654 5788888877766665555432 1222 2333233333
Q ss_pred hhcC--CCChHH-----------HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649 294 RVYP--QFHPLL-----------GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 294 ~~~g--~~hp~~-----------~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
..|| ++-|.. +..=+.+|+.|...|.+..|...+++.++-+..+
T Consensus 144 ~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 144 QRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 3344 222221 1122234777777888888988888877754443
No 331
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=51.97 E-value=21 Score=32.68 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=35.7
Q ss_pred HHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 281 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 281 Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
|..||.+++... |..|..++.||.++...|+.-+|+-+|-+|+-
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 566777777643 77799999999999999999999999999883
No 332
>PF13041 PPR_2: PPR repeat family
Probab=51.87 E-value=27 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
.+.+.+...|.+.|++++|.+++++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3567789999999999999999888763
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=51.79 E-value=71 Score=30.06 Aligned_cols=86 Identities=22% Similarity=0.333 Sum_probs=56.3
Q ss_pred HHHHHHHhhcccC--CccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCCh
Q 017649 243 YKMIEKLQKKLYH--PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT 320 (368)
Q Consensus 243 ~~~~l~~~~~~l~--~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~ 320 (368)
.+.++..+..++. .....++.+....+.+....|.+..|.....++... .+..+.......+.-++++|..|+.
T Consensus 125 ~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~----~~~~~~~~~~v~~e~akllw~~g~~ 200 (352)
T PF02259_consen 125 WEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQL----NPSSESLLPRVFLEYAKLLWAQGEQ 200 (352)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc----CCcccCCCcchHHHHHHHHHHcCCH
Confidence 3444444444443 112344566777888889999999888776665432 2222222334456778999999999
Q ss_pred HHHHHHHHHHHH
Q 017649 321 ENAIKSMTEAVE 332 (368)
Q Consensus 321 ~eA~~~l~kAl~ 332 (368)
.+|+..+++.+.
T Consensus 201 ~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 201 EEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHH
Confidence 999999988877
No 334
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=51.12 E-value=2.3e+02 Score=27.04 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCC-------CCchHHHHHHHHHHHHHHHhhhh
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT-------NSPFMKELILKLEEAQAEASYKL 363 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~-------~hp~~~~l~~~L~~~~~el~~~~ 363 (368)
-.+.+++.+|..+...+++.+|+.+++.|...++..--. .+..+..+...+.....+++.+|
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdN 317 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKESERLCKSFLLDVWGNLKKLKEKIEKELEKAEREN 317 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356677777888888889999999999888766644211 12234445555555555555554
No 335
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=51.10 E-value=5 Score=28.81 Aligned_cols=31 Identities=29% Similarity=0.697 Sum_probs=19.6
Q ss_pred CccCCCCCccceeecCCCCccccCCCCCCCCHHHH
Q 017649 179 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEI 213 (368)
Q Consensus 179 ~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~ 213 (368)
|+| .|+..+....+.+.-+| .||+.++..+.
T Consensus 4 frC---~Cgr~lya~e~~kTkkC-~CG~~l~vk~~ 34 (68)
T PF09082_consen 4 FRC---DCGRYLYAKEGAKTKKC-VCGKTLKVKER 34 (68)
T ss_dssp EEE---TTS--EEEETT-SEEEE-TTTEEEE--SS
T ss_pred EEe---cCCCEEEecCCcceeEe-cCCCeeeeeeE
Confidence 567 48777777777777899 99998875543
No 336
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.01 E-value=28 Score=20.19 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
+++.+..++...|+++.|.+++....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788999999999999888776543
No 337
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=50.51 E-value=27 Score=36.74 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 274 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 274 ~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
..++|.+|.++.+.++++. |...-.+|.+|-+++.+++.+.|.+.|..++.
T Consensus 497 ~~~~fs~~~~hle~sl~~n--------plq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN--------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cchhHHHHHHHHHHHhhcC--------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 3456666666666555433 34445678889999999999999999988764
No 338
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=50.04 E-value=30 Score=26.92 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEEccCCCCCCeeEEeccCCC
Q 017649 115 LAVVRAVQHVPKGAEVLISYIETA 138 (368)
Q Consensus 115 ~~~~~a~~~i~~geel~~~Y~~~~ 138 (368)
.+.+.-.++|..|++++++|.+..
T Consensus 76 tVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 76 TITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EEEEEecccccCCCEEEEEeeCCC
Confidence 788888899999999999998753
No 339
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=49.52 E-value=1.2e+02 Score=28.34 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649 262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 341 (368)
Q Consensus 262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~ 341 (368)
..++..++..+...|+++.+.+..++.+. -||-.-..+..+-..|...|+...|+..|++....+....|.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 45677788888888999988888777664 2233223344555677888999999999999999999999988
Q ss_pred CchH
Q 017649 342 SPFM 345 (368)
Q Consensus 342 hp~~ 345 (368)
.+..
T Consensus 225 P~~~ 228 (280)
T COG3629 225 PAPE 228 (280)
T ss_pred ccHH
Confidence 7643
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.04 E-value=1.4e+02 Score=28.01 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh----hHhhhcCChHHHHHHHHHHHHhhcccc
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG----KLEWFLGDTENAIKSMTEAVEILRITH 338 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La----~l~~~~g~~~eA~~~l~kAl~i~~~~~ 338 (368)
.+-..|+.+|...|+|.+-....+++-.....--|.+.-..|.++.++- +.|-.+.....-..+|++|+.|-...
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI- 224 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI- 224 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC-
Confidence 3444578888889999988888888888888888988888887777663 23334455555556788998887766
Q ss_pred CCCCchHHHHH
Q 017649 339 GTNSPFMKELI 349 (368)
Q Consensus 339 G~~hp~~~~l~ 349 (368)
.||....+.
T Consensus 225 --PHPlImGvI 233 (440)
T KOG1464|consen 225 --PHPLIMGVI 233 (440)
T ss_pred --CchHHHhHH
Confidence 677665543
No 341
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=48.71 E-value=1.5e+02 Score=24.25 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=49.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-----ccHH--HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-----VNLM--QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 298 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h-----~~l~--~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~ 298 (368)
.|+..+..+++-.++-.|+.++.+.+.+.-.+. ..++ -.-++||..+..+|+-+-.++|++.+-+-+-.+.|.
T Consensus 7 lAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 7 LADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccC
Confidence 344555667777777777777776655532221 1222 245789999999999999999998887766666663
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.13 E-value=1.9e+02 Score=25.31 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649 223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302 (368)
Q Consensus 223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~ 302 (368)
.+..+....++|+-+.|+..|..+-..- -.+.--.++. +-..+.++++.|.|+.- ....+-+-++.+|.
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt--~~P~~~rd~A--Rlraa~lLvD~gsy~dV-------~srvepLa~d~n~m 165 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT--SIPQIGRDLA--RLRAAYLLVDNGSYDDV-------SSRVEPLAGDGNPM 165 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC--CCcchhhHHH--HHHHHHHHhccccHHHH-------HHHhhhccCCCChh
Confidence 3444555556677777776665543211 0111111222 22244455566666533 23344556789999
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
+....--||...+..|++.+|.++|.+...
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 999999999999999999999999988665
No 343
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.05 E-value=2.5e+02 Score=27.19 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649 258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 297 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g 297 (368)
||+-+.++-.++.++..+|+...|.++.++++-.+++.+.
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~ 75 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH 75 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445556778999999999999999999999999986655
No 344
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=47.95 E-value=1.2e+02 Score=31.99 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=8.8
Q ss_pred HHHHhhhhccccccc
Q 017649 67 AENFSKLACNAHTIC 81 (368)
Q Consensus 67 ~~~~~~~~~N~~~i~ 81 (368)
.+-+..++.|+..|+
T Consensus 464 ~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 464 DRGLSELQANGVEIN 478 (913)
T ss_pred HHHHHHHhhcceeec
Confidence 344555666776664
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=47.89 E-value=65 Score=31.09 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=31.1
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhH
Q 017649 268 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL 313 (368)
Q Consensus 268 La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l 313 (368)
-+.-|..+|.|++|++.|.+.+..+. .-|-.|..++.+|+++-+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~F 147 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSF 147 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHH
Confidence 34568889999999999999887553 1223455567777776433
No 346
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=46.94 E-value=39 Score=32.56 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc-----------cCCccccHHHHHHHHHHHHHhhhhHHHHHHHH
Q 017649 217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL-----------YHPFSVNLMQTREKLIKILMELEDWKEALAYC 285 (368)
Q Consensus 217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~-----------l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~ 285 (368)
....+..-+.....+..+++..|..-|.+.+...... ..+....-...+.+++.+-...+++..|...+
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~ 298 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT 298 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence 3333344444445667778888888887776643210 11122223344556777777777777776665
Q ss_pred HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
..++. ..+...-.++..+..+..+.++++|+..++.|..
T Consensus 299 ~~~~~--------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 299 NEALR--------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred ccccc--------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 55554 4566667788888888888999999999888875
No 347
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=46.88 E-value=56 Score=32.95 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=12.5
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHH
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAV 331 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl 331 (368)
++.-|+++...|+.++|+..+.+|+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 3444555555555555555555444
No 348
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=46.76 E-value=14 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.830 Sum_probs=16.1
Q ss_pred CCccceeecCCC--CccccCCCCCCC
Q 017649 185 GCSGFLLRDSDD--KGFTCQQCGLVR 208 (368)
Q Consensus 185 ~C~g~~~~~~~~--~~~~C~~C~~~~ 208 (368)
.|++.+.+..+. ..+.|..||...
T Consensus 5 ~Cg~~l~~~~~~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 5 KCGNMLIPKEGKEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCccccccCCCCCEEECCcCCCeE
Confidence 577766655432 368999999754
No 349
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=45.73 E-value=32 Score=23.27 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=16.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHH
Q 017649 200 TCQQCGLVRSKEEIKKIASEVNILSK 225 (368)
Q Consensus 200 ~C~~C~~~~~~~~~~~~~~~~~~l~~ 225 (368)
.|+.|+...+.+....++.+....++
T Consensus 22 ~CPlC~r~l~~e~~~~li~~~~~~i~ 47 (54)
T PF04423_consen 22 CCPLCGRPLDEEHRQELIKKYKSEIE 47 (54)
T ss_dssp E-TTT--EE-HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 79999999998888877776665544
No 350
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=45.61 E-value=6.8 Score=24.23 Aligned_cols=26 Identities=23% Similarity=0.657 Sum_probs=16.4
Q ss_pred CCccceeecCCCCc-cccCCCCCCCCH
Q 017649 185 GCSGFLLRDSDDKG-FTCQQCGLVRSK 210 (368)
Q Consensus 185 ~C~g~~~~~~~~~~-~~C~~C~~~~~~ 210 (368)
.|++.+.|..+... ..|..|+.....
T Consensus 6 ~C~nlL~p~~~~~~~~~C~~C~Y~~~~ 32 (35)
T PF02150_consen 6 ECGNLLYPKEDKEKRVACRTCGYEEPI 32 (35)
T ss_dssp TTTSBEEEEEETTTTEEESSSS-EEE-
T ss_pred CCCccceEcCCCccCcCCCCCCCccCC
Confidence 68888887654322 269999986543
No 351
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=45.47 E-value=2.3e+02 Score=30.86 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
|-.+...|+.++|..+++.. ..+++++-. ++..+-.+|.+++.+++|..++++++. .||..+-
T Consensus 50 aLsl~r~gk~~ea~~~Le~~-----~~~~~~D~~---tLq~l~~~y~d~~~~d~~~~~Ye~~~~----~~P~eel 112 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEAL-----YGLKGTDDL---TLQFLQNVYRDLGKLDEAVHLYERANQ----KYPSEEL 112 (932)
T ss_pred HHHHHHhcCchhHHHHHhhh-----ccCCCCchH---HHHHHHHHHHHHhhhhHHHHHHHHHHh----hCCcHHH
Confidence 44456677777777554432 234444433 345677889999999999999999885 4566433
No 352
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=45.43 E-value=1.2e+02 Score=22.03 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc
Q 017649 218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 253 (368)
Q Consensus 218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~ 253 (368)
+....+...|...-..|++++|+.+|..++......
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 344556677777788899999999999988765443
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.95 E-value=3.2e+02 Score=28.86 Aligned_cols=103 Identities=13% Similarity=0.003 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcccCCccccHHHHHHHHHHHH-HhhhhHHHHHHHHHhhhhhHHhhcC-----CCChH-----HHHHHhh
Q 017649 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELEDWKEALAYCQLTIPVYQRVYP-----QFHPL-----LGLQYYT 309 (368)
Q Consensus 241 ~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~-~~~g~~~~Al~~~~~~l~~~e~~~g-----~~hp~-----~~~~l~~ 309 (368)
..+.+++-....--+|.-+.+..+..+|..+- ...|+-+--+..+++...+++...| .+.|. ++..-+|
T Consensus 735 ~AL~e~Ll~~~~~aspe~~~~~lc~~~LI~l~~V~~G~~~vEl~iL~~v~~~~~i~~s~~~~t~~YP~~E~~WLa~~~WN 814 (872)
T KOG4814|consen 735 IALLETLLKRNMGASPEVKERELCSWLLILLENVINGNHEVELRILDRVLKILNINQSSLQDTDGYPQTELEWLATYCWN 814 (872)
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHhh
Confidence 33344443333334555555555555554443 2335444333334444444432222 34454 3566678
Q ss_pred hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc
Q 017649 310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP 343 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp 343 (368)
.|.++...|+++.|+++..-++++.-..-|.+.-
T Consensus 815 ~gvL~~~~~~~~~A~KWc~~~L~fan~vTgme~Y 848 (872)
T KOG4814|consen 815 IGVLYIIKDNKSNAIKWCKHSLGFANMVTGMEGY 848 (872)
T ss_pred hheeeeeccchhhHHHHHHHHHHHHhhhcchhHH
Confidence 8999999999999999999999999887777753
No 354
>PRK11519 tyrosine kinase; Provisional
Probab=44.19 E-value=1.6e+02 Score=31.41 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=21.4
Q ss_pred HHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649 331 VEILRITHGTNSPFMKELILKLEEAQAEAS 360 (368)
Q Consensus 331 l~i~~~~~G~~hp~~~~l~~~L~~~~~el~ 360 (368)
..-+...||++||.++.+......+..++.
T Consensus 327 ~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~ 356 (719)
T PRK11519 327 EAEISKLYTKEHPAYRTLLEKRKALEDEKA 356 (719)
T ss_pred HHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 334556799999999988877766655444
No 355
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.19 E-value=94 Score=30.13 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHH
Q 017649 218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWK 279 (368)
Q Consensus 218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~ 279 (368)
..+..++....+.+.++++++|...+..+..+...++|..|.....+...-+.+++..++++
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e 100 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEE 100 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666778889999999999999999889999999888888887777777666654
No 356
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=43.86 E-value=15 Score=25.29 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=12.6
Q ss_pred EEEEccCCCCCCeeEEec
Q 017649 117 VVRAVQHVPKGAEVLISY 134 (368)
Q Consensus 117 ~~~a~~~i~~geel~~~Y 134 (368)
++.|.++|++|+.|+-.-
T Consensus 3 vvVA~~di~~G~~i~~~d 20 (63)
T PF08666_consen 3 VVVAARDIPAGTVITAED 20 (63)
T ss_dssp EEEESSTB-TT-BECTTT
T ss_pred EEEEeCccCCCCEEccCC
Confidence 578999999999985443
No 357
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.64 E-value=18 Score=35.63 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=45.4
Q ss_pred EEEccccccccCCCccCcEEE---EeCCE---EEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHh
Q 017649 90 TGLYPVISIINHSCLPNAVLV---FEGRL---AVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK 149 (368)
Q Consensus 90 ~~lyp~~s~~nHsC~PN~~~~---~~~~~---~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~ 149 (368)
..+.-.+|.+.||=.||..+. |-... -.+..++++.+|||||-.+.........|.-.|.
T Consensus 199 YvMDefGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg~~~p~~Rk~~l~ 264 (631)
T KOG2155|consen 199 YVMDEFGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASGVIHPEWRKYILQ 264 (631)
T ss_pred EEHhhhhhhhccCCCCcceeeeheecchhcceeEEeeccCCCCchHHHHHHhhcCCCHHHHHHHhc
Confidence 444457899999999999763 33332 3678999999999999999777667777766664
No 358
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=43.63 E-value=1.5e+02 Score=32.12 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=52.1
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG 311 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La 311 (368)
+.+++.+|.+...++++. ||+ ...+.++..| ...++|..++|... .+++. . .|+.+- ..+-.+-
T Consensus 21 d~~qfkkal~~~~kllkk-----~Pn-~~~a~vLkaL--sl~r~gk~~ea~~~-Le~~~---~-~~~~D~---~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK-----HPN-ALYAKVLKAL--SLFRLGKGDEALKL-LEALY---G-LKGTDD---LTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH-----CCC-cHHHHHHHHH--HHHHhcCchhHHHH-Hhhhc---c-CCCCch---HHHHHHH
Confidence 445677777766666543 232 2223333333 46778999999743 22222 1 223322 3345556
Q ss_pred hHhhhcCChHHHHHHHHHHHH
Q 017649 312 KLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 312 ~l~~~~g~~~eA~~~l~kAl~ 332 (368)
..|..+|++++|...|++|..
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHh
Confidence 678899999999999999985
No 359
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=43.58 E-value=18 Score=20.40 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=6.0
Q ss_pred CCccccCCCC
Q 017649 196 DKGFTCQQCG 205 (368)
Q Consensus 196 ~~~~~C~~C~ 205 (368)
...+.|+.||
T Consensus 14 ~v~f~CPnCG 23 (24)
T PF07754_consen 14 AVPFPCPNCG 23 (24)
T ss_pred CceEeCCCCC
Confidence 3446666776
No 360
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=43.21 E-value=1.6e+02 Score=24.76 Aligned_cols=109 Identities=13% Similarity=-0.008 Sum_probs=61.2
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHhhcc------c-------C-------C---------c--cccHHHHHHHHHHHHH
Q 017649 225 KKTLALTSCGNHQEVVSTYKMIEKLQKKL------Y-------H-------P---------F--SVNLMQTREKLIKILM 273 (368)
Q Consensus 225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~------l-------~-------~---------~--h~~l~~~~~~La~~~~ 273 (368)
..|.....+|+.++|.+...++......+ + + | . ...-....-.-+.-.+
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l 86 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELL 86 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHH
Confidence 34555667889999988887766543211 1 1 1 0 1111233344555667
Q ss_pred hhhhHHHHHHHHHhhh---hhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 274 ELEDWKEALAYCQLTI---PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 274 ~~g~~~~Al~~~~~~l---~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
..|+...|.+.++.+- .......|-. .--.-.+-|.-+...|++.+|-..|..|++-+..
T Consensus 87 ~~g~~~~A~~~L~~~~~ei~~~~~~lPL~---~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~lv~ 149 (155)
T PF10938_consen 87 KKGDKQAAREILKLAGSEIDITTALLPLA---QTPAAVKQAAALLDEGKYYEANAALKQALDGLVF 149 (155)
T ss_dssp HTT-HHHHHHHHHHTT-EEEEEEEEEEHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-EE
T ss_pred hCCCHHHHHHHHHHhcccceeeeeeCCHH---hhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCeEE
Confidence 7899999988766542 2222333300 0112234566677899999999999999986654
No 361
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.11 E-value=1e+02 Score=29.82 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=60.0
Q ss_pred hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649 230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT 309 (368)
Q Consensus 230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~ 309 (368)
+.+.|-+.+|.+.-.+++.+ |+.=.-+.+.++.++.-.|+++++.++..+.-+.++ .......+-+..
T Consensus 185 L~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr----~s~mlasHNyWH 252 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR----QSWMLASHNYWH 252 (491)
T ss_pred HHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh----hhhHHHhhhhHH
Confidence 34667788888777766554 222234556677778778899999988777766665 233344456667
Q ss_pred hhhHhhhcCChHHHHHHHHH
Q 017649 310 CGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 310 La~l~~~~g~~~eA~~~l~k 329 (368)
.|..+.+-+.|+.|+..|.+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHhhhcccchhHHHHHHHH
Confidence 77777777888888887764
No 362
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=43.05 E-value=23 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=17.9
Q ss_pred CccCCCCCccceeecC--CCCccccCCCCC
Q 017649 179 YRCKDDGCSGFLLRDS--DDKGFTCQQCGL 206 (368)
Q Consensus 179 ~~C~~~~C~g~~~~~~--~~~~~~C~~C~~ 206 (368)
.+||.++|...+...+ ......|..|+.
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~ 48 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGF 48 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCC
Confidence 4688778876665542 344567777764
No 363
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.94 E-value=2.7e+02 Score=27.60 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=54.9
Q ss_pred cccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC--ChHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649 252 KLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF--HPLLGLQYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 252 ~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~--hp~~~~~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
..|..+...-.-..+-|...|..-+.|+.|-.+-. +..||.. +-.-+-.+|-+|++-..+++|..|.+++.+
T Consensus 199 AtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvs------K~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~q 272 (493)
T KOG2581|consen 199 ATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVS------KSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQ 272 (493)
T ss_pred hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhh------cccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHH
Confidence 34555555555556677788888888888866533 3456733 335677888999999999999999999999
Q ss_pred HHH
Q 017649 330 AVE 332 (368)
Q Consensus 330 Al~ 332 (368)
|+.
T Consensus 273 a~r 275 (493)
T KOG2581|consen 273 ALR 275 (493)
T ss_pred HHH
Confidence 886
No 364
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=42.60 E-value=4.1e+02 Score=30.77 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 334 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~ 334 (368)
++..|..+|...+.+.+|.++++..++-+ | ..+ ..+..+|..+..+.+-++|...+.+|+.-+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF----~-q~~---~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF----G-QTR---KVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh----c-chh---hHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 34556667766667777766666555433 2 111 222333444555555556666666665533
No 365
>PF04071 zf-like: Cysteine-rich small domain; InterPro: IPR007212 This is a probable metal-binding domain. It is found in a probable precorrin-3B C17-methyltransferase from Methanobacterium thermoautotrophicum, that catalyses the methylation of C-17 in precorrin-3B to form precorrin-4.
Probab=42.45 E-value=1e+02 Score=23.38 Aligned_cols=42 Identities=19% Similarity=0.460 Sum_probs=28.2
Q ss_pred CCccceee-cCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 017649 185 GCSGFLLR-DSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKK 226 (368)
Q Consensus 185 ~C~g~~~~-~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~ 226 (368)
.|.|-... .++...|.|..|.-.-..+.+..+++.+.+..+.
T Consensus 37 ~~~G~~~~~~~G~~vw~C~~C~~~H~~e~~~~i~~~~~~~~~~ 79 (86)
T PF04071_consen 37 ECGGNFIYTKNGSKVWDCSDCTLPHRPENYDYIIRKLKEIIEE 79 (86)
T ss_pred CCCccEEEcCCCCeeeECccCCCccCHHHHHHHHHHHHHHHHH
Confidence 34444333 3344689999999888888777777776665543
No 366
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=42.19 E-value=1e+02 Score=33.01 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=18.3
Q ss_pred hhHhhhcCChHHHHHHHHHHHHhhc-------cccCCCCc
Q 017649 311 GKLEWFLGDTENAIKSMTEAVEILR-------ITHGTNSP 343 (368)
Q Consensus 311 a~l~~~~g~~~eA~~~l~kAl~i~~-------~~~G~~hp 343 (368)
+.+.......+.|.+..++..++++ ..+||-..
T Consensus 639 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~a 678 (730)
T COG1198 639 AAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPA 678 (730)
T ss_pred eeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCcc
Confidence 3344445566667666666554444 45666643
No 367
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.19 E-value=79 Score=27.59 Aligned_cols=71 Identities=13% Similarity=0.015 Sum_probs=49.8
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHh
Q 017649 229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY 308 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~ 308 (368)
-+...|.|++ +....+.+-++.++....++..|+-+-.+.|+|.+|..++.++.. ...-|.+-..++..+.
T Consensus 141 lLvD~gsy~d-------V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~ml 211 (221)
T COG4649 141 LLVDNGSYDD-------VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHhccccHHH-------HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHHHH
Confidence 3456666654 333445667888999999999999999999999999999888765 3334444444444443
No 368
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.76 E-value=1.4e+02 Score=21.95 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL 253 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~ 253 (368)
........|..+-..|++++|+..|+.+.+...++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34456667778889999999999999988765544
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.51 E-value=95 Score=30.62 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
.++.+...|+++.|++.|.++..-++.. ..++.+..++..+-+.+|+|..-..|..++..
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3445667899999999999877666542 34567778888999999999877776555543
No 370
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=41.45 E-value=1.3e+02 Score=29.40 Aligned_cols=70 Identities=17% Similarity=0.031 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHh---hhhHHHHHHHHHhhhhhHHhhcCCCChHH----HHHHhhhhhHhhh--cCChHHHHHHHHHHHH
Q 017649 262 MQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQFHPLL----GLQYYTCGKLEWF--LGDTENAIKSMTEAVE 332 (368)
Q Consensus 262 ~~~~~~La~~~~~---~g~~~~Al~~~~~~l~~~e~~~g~~hp~~----~~~l~~La~l~~~--~g~~~eA~~~l~kAl~ 332 (368)
..+....|.++.+ .|+.++|+..+..++..- +...|.+ |-.+..+..-... .....+|+.+|+||.+
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESD----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 3456677777877 899999999888765433 2344442 2233333221111 2346788888888876
Q ss_pred hhc
Q 017649 333 ILR 335 (368)
Q Consensus 333 i~~ 335 (368)
+-.
T Consensus 255 ~~~ 257 (374)
T PF13281_consen 255 IEP 257 (374)
T ss_pred CCc
Confidence 553
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=4.3e+02 Score=27.46 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc----------------cccHHHHHHHHHHHHHhhhhHHHHHH
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF----------------SVNLMQTREKLIKILMELEDWKEALA 283 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~----------------h~~l~~~~~~La~~~~~~g~~~~Al~ 283 (368)
+.+++..|..+.-+|+++-|-.+.++++-..++.+||. |....-+...-++-+..-|-|.-|++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 44566677777788999999899888887777777764 22222222333333345588999999
Q ss_pred HHHhhhh
Q 017649 284 YCQLTIP 290 (368)
Q Consensus 284 ~~~~~l~ 290 (368)
+|+-++.
T Consensus 364 ~cKllls 370 (665)
T KOG2422|consen 364 WCKLLLS 370 (665)
T ss_pred HHHHHhh
Confidence 9887653
No 372
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=41.03 E-value=2e+02 Score=30.83 Aligned_cols=36 Identities=19% Similarity=-0.022 Sum_probs=22.1
Q ss_pred hhcCCCChHHHH-HHhhhhhHhhhcCChHHHHHHHHH
Q 017649 294 RVYPQFHPLLGL-QYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 294 ~~~g~~hp~~~~-~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
++.+..||.... ....+|+-+-..|++.+|+..|-+
T Consensus 871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 455666666543 444667777677777777665544
No 373
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=40.86 E-value=19 Score=25.07 Aligned_cols=28 Identities=18% Similarity=0.653 Sum_probs=14.9
Q ss_pred hcCccCCCCCccceeecC-----CCCccccCCCCC
Q 017649 177 EGYRCKDDGCSGFLLRDS-----DDKGFTCQQCGL 206 (368)
Q Consensus 177 ~~~~C~~~~C~g~~~~~~-----~~~~~~C~~C~~ 206 (368)
..|.|| +|+..++..- -++.++|+.||-
T Consensus 26 v~F~CP--nCGe~~I~Rc~~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCP--NCGEVEIYRCAKCRKLGNPYRCPKCGF 58 (61)
T ss_pred eEeeCC--CCCceeeehhhhHHHcCCceECCCcCc
Confidence 367886 5654433211 134567777764
No 374
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=40.52 E-value=21 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=13.9
Q ss_pred CCccceeecCCCCccccCCCCCC
Q 017649 185 GCSGFLLRDSDDKGFTCQQCGLV 207 (368)
Q Consensus 185 ~C~g~~~~~~~~~~~~C~~C~~~ 207 (368)
.|++++.+......-.|..||..
T Consensus 8 ~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 8 RCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TT--BEEE-SSSS-EEESSSS-E
T ss_pred cCCccccCCCCcCEeECCCCcCE
Confidence 57788877776666789999864
No 375
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=40.27 E-value=3e+02 Score=30.45 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHhhhhhHHhhcC-CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHH
Q 017649 283 AYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353 (368)
Q Consensus 283 ~~~~~~l~~~e~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~ 353 (368)
+.+.+++..++++.| +.-| ..|.--|.+|..+|+++|-++-|.-|++-+ +.||..-.++..+.
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 596 (932)
T PRK13184 533 RDFTQALSEFSYLHGGVGAP---LEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLV 596 (932)
T ss_pred HHHHHHHHHHHHhcCCCCCc---hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHH
Confidence 345556667777766 3444 223334456677899999999999888643 57887777766653
No 376
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=40.00 E-value=2.4e+02 Score=32.50 Aligned_cols=89 Identities=8% Similarity=-0.063 Sum_probs=44.7
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh----hhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL----EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~----g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
.+.++.++|.++.++++....-.-...-..+--++-||-..|+.. .=|++|.+||. |. ..
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--------------~~--~V 1532 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--------------AY--TV 1532 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--------------hH--HH
Confidence 355677888888888876431111111112222333444444311 11333333322 11 23
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
+..|..+|..-+++.+|-++|+.-+.-+.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 45566677777777777777766554433
No 377
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.32 E-value=3.6e+02 Score=26.98 Aligned_cols=119 Identities=11% Similarity=-0.041 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649 217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY 296 (368)
Q Consensus 217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~ 296 (368)
+..++.+..+|..+.++.++..|-.+..++.--.. .+-+-.....+...++.++.+.+.--.+..+.-.++.-... |
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~--k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se-y 346 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCD--KGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE-Y 346 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH-h
Confidence 44556666666666666666666666555432211 11122233455566666666555555566655554433221 1
Q ss_pred CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649 297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339 (368)
Q Consensus 297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G 339 (368)
--+ -..+..-.++|.....+|-.+.|.+.++.|+..+..--|
T Consensus 347 ~ld-yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~Gg 388 (482)
T KOG4322|consen 347 SLD-YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGG 388 (482)
T ss_pred ccc-hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccc
Confidence 111 222344456677777888888888888888876655433
No 378
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=39.23 E-value=1.8e+02 Score=30.57 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=61.9
Q ss_pred HhhhcCChHHHHHHHHHHHHH--hhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 229 ALTSCGNHQEVVSTYKMIEKL--QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~--~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
-+...+++++|-+.+..++.. +....++++..+ ...+........+.... ..+-.+.+--.+.+.-.+|..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ql---w~elcdlis~~p~~~~s----lnvdaiiR~gi~rftDq~g~L 250 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQL---WLELCDLISQNPDKVQS----LNVDAIIRGGIRRFTDQLGFL 250 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhH---HHHHHHHHHhCcchhcc----cCHHHHHHhhcccCcHHHHHH
Confidence 345667788888877777653 222334443332 22333333322221111 112234444556777889999
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
.-.||.-|...|.++.|.+.|++|+.-..
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~ 279 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVM 279 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence 99999999999999999999999987443
No 379
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=38.42 E-value=23 Score=26.78 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=17.3
Q ss_pred cCccCCCCCccceeecCCCCccccCCCCCCCC
Q 017649 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 209 (368)
Q Consensus 178 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~ 209 (368)
.+.|| .|+-..+.-.....|.|..||....
T Consensus 35 ~~~Cp--~C~~~~VkR~a~GIW~C~kCg~~fA 64 (89)
T COG1997 35 KHVCP--FCGRTTVKRIATGIWKCRKCGAKFA 64 (89)
T ss_pred CCcCC--CCCCcceeeeccCeEEcCCCCCeec
Confidence 34554 3433333333456799999998653
No 380
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=37.86 E-value=95 Score=31.11 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 263 QTREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
.....|+.+.+.+|+++-|.+.++++-+
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3677899999999999999888887643
No 381
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=37.30 E-value=2e+02 Score=23.24 Aligned_cols=83 Identities=16% Similarity=0.078 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh------cCCCChHH--HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRV------YPQFHPLL--GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~------~g~~hp~~--~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
..++..+++..|+.+.-..+.++.-.+-..- +++.+|.. ...+..+...+...+++..|++++..-.+.+.
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~- 83 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP- 83 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-
Confidence 3456666777787776666665543222111 45555553 46778888888889999999999888887777
Q ss_pred ccCCCCchHHHHH
Q 017649 337 THGTNSPFMKELI 349 (368)
Q Consensus 337 ~~G~~hp~~~~l~ 349 (368)
...| +.+..+++
T Consensus 84 I~i~-~~~W~~Ll 95 (126)
T PF12921_consen 84 IPIP-KEFWRRLL 95 (126)
T ss_pred CCCC-HHHHHHHH
Confidence 3333 55565555
No 382
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=37.01 E-value=36 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.587 Sum_probs=15.3
Q ss_pred cCccCCCCCccceeecCCCCccccCCCCC
Q 017649 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGL 206 (368)
Q Consensus 178 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~ 206 (368)
++.||.+...... .......|+|..|++
T Consensus 18 g~~CP~Cg~~~~~-~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 18 GFVCPHCGSTKHY-RLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCCeeeE-EeCCCCeEECCCCCC
Confidence 5667643332111 122245789999986
No 383
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.90 E-value=88 Score=22.08 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 250 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~ 250 (368)
...+...|...-..|++++|+..|..++...
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455667777788999999999998887654
No 384
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.87 E-value=1.7e+02 Score=21.65 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhh
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQK 251 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~ 251 (368)
+...+++|-..-+.|+.++|+..|++.+....
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 34456667777788999999999999877543
No 385
>PF02748 PyrI_C: Aspartate carbamoyltransferase regulatory chain, metal binding domain; InterPro: IPR020542 Aspartate carbamoyltransferase (aspartate transcarbamylase, ATCase) 2.1.3.2 from EC is an allosteric enzyme that plays a central role in the regulation of the pyrimidine pathway in bacteria. The holoenzyme is a dodecamer composed of six catalytic chains, each with an active site, and six regulatory chains lacking catalytic activity []. The catalytic subunits exist as a dimer of catalytic trimers, (c3)2, while the regulatory subunits exist as a trimer of regulatory dimers, (r2)3, therefore the complete holoenzyme can be represented as (c3)2(r2)3. The association of the catalytic subunits c3 with the regulatory subunits r2 is responsible for the establishment of positive co-operativity between catalytic sites for the binding of aspartate and it dictates the pattern of allosteric response toward nucleotide effectors. ATCase from Escherichia coli is the most extensively studied allosteric enzyme []. The crystal structure of the T-state, the T-state with CTP bound, the R-state with N-phosphonacetyl-L-aspartate (PALA) bound, and the R-state with phosphonoacetamide plus malonate bound have been used in interpreting kinetic and mutational studies. A high-resolution structure of E. coli ATCase in the presence of PALA (a bisubstrate analog) allows a detailed description of the binding at the active site of the enzyme and allows a detailed model of the tetrahedral intermediate to be constructed. The entire regulatory chain has been traced showing that the N-terminal regions of the regulatory chains R1 and R6 are located in close proximity to each other and to the regulatory site. This portion of the molecule may be involved in the observed asymmetry between the regulatory binding sites as well as in the heterotropic response of the enzyme []. The C-terminal domain of the regulatory chains have a rubredoxin-like zinc-bound fold. ATCase from Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans) differs from the other investigated enterobacterial ATCases by its absence of homotropic co-operativity toward the substrate aspartate and its lack of response to ATP which is an allosteric effector (activator) of this family of enzymes. Nevertheless, the E. herbicola ATCase has the same quaternary structure, two trimers of catalytic chains with three dimers of regulatory chains, (c3)2(r2)3, as other enterobacterial ATCases and shows extensive primary structure conservation []. This entry represents the C-terminal domain.; PDB: 2YWW_B 1SKU_D 1Q95_L 8ATC_B 3AT1_D 1RAI_D 4E2F_D 1NBE_B 6AT1_B 2FZC_D ....
Probab=36.73 E-value=25 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=13.2
Q ss_pred CCCCccccCCCCCCCCHHHH
Q 017649 194 SDDKGFTCQQCGLVRSKEEI 213 (368)
Q Consensus 194 ~~~~~~~C~~C~~~~~~~~~ 213 (368)
.+....+|.=|+...+.+++
T Consensus 31 ~~~~~~rC~YCe~~~~~~eI 50 (52)
T PF02748_consen 31 KEPIKLRCHYCERIITEDEI 50 (52)
T ss_dssp TTTCEEEETTT--EEEHHHH
T ss_pred CCCCEEEeeCCCCEecccEE
Confidence 34566899999998877655
No 386
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.36 E-value=2.4e+02 Score=25.54 Aligned_cols=104 Identities=9% Similarity=0.012 Sum_probs=51.2
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCc-cccHHH-HHHHHHHHH---HhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQ-TREKLIKIL---MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 305 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~-h~~l~~-~~~~La~~~---~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~ 305 (368)
+.-|+++.|+++...+++... .++.. ...+.. +.+.++... ...|.--+ ..+.+.+..+.. -.--....++.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e-~~~~~~~~~l~~-~~dmpd~vrAK 170 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL-TMPDQFRRTLANFVAEEVANAALKAASAGESVE-PYFLRVFLDLTT-EWDMPDEVRAK 170 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC-CCCccccCCchHHHHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHh-cCCCChHHHHH
Confidence 466889999998888776432 22221 111111 112222211 12222100 112222222221 11123344566
Q ss_pred HHhhhhhHhh---------hcCChHHHHHHHHHHHHhhccc
Q 017649 306 QYYTCGKLEW---------FLGDTENAIKSMTEAVEILRIT 337 (368)
Q Consensus 306 ~l~~La~l~~---------~~g~~~eA~~~l~kAl~i~~~~ 337 (368)
.+..+|.++. ..++...|..+|++|+.+-...
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 6666676663 4567889999999999865544
No 387
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=36.28 E-value=1.8e+02 Score=28.08 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=39.6
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC----CchHHHHHHHHHHHHHHHhhhh
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN----SPFMKELILKLEEAQAEASYKL 363 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~----hp~~~~l~~~L~~~~~el~~~~ 363 (368)
.+..++..|......+++.+|+.+++.|.+.++...-.. +..+..+...+......++.+|
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~a~kdN 316 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPGSDISSPVIFRDERAEVATLLQKYEKEN 316 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777778888888999999999999998655432211 1233444555555555555554
No 388
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=36.03 E-value=3.1e+02 Score=24.32 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=45.6
Q ss_pred CCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHH
Q 017649 255 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 323 (368)
Q Consensus 255 ~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA 323 (368)
+..-.....+...||..|. ..|-++|+.++.++++.+..-- ..+|. .+..||.++..+|+++.|
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-~~n~e---il~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-NFNPE---ILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-CCCHH---HHHHHHHHHHHhcchhhh
Confidence 3344455677788888777 4688899999999987664110 23444 457788999999999888
No 389
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=35.93 E-value=1.8e+02 Score=21.39 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 254 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l 254 (368)
..+...|...-..|++++|+.+|..++..+...+
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788999999999999888765543
No 390
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=34.81 E-value=4.1e+02 Score=25.27 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhhhHHhhcCCCChHHHH--HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649 279 KEALAYCQLTIPVYQRVYPQFHPLLGL--QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~--~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
++-+.-....+.-|+..+|-.+|.-+. ++.-++++ +.-+..++.-++-++...||+.|-+..+....+.++
T Consensus 192 eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~L-------e~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlr 264 (372)
T COG3524 192 EERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKL-------EDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLR 264 (372)
T ss_pred HHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 333344455677788889988887642 22222333 333334444556666778999999999999888888
Q ss_pred HHHhhhhc
Q 017649 357 AEASYKLS 364 (368)
Q Consensus 357 ~el~~~~~ 364 (368)
.++.++.+
T Consensus 265 kql~qe~q 272 (372)
T COG3524 265 KQLLQEKQ 272 (372)
T ss_pred HHHHHHHH
Confidence 88877654
No 391
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=34.47 E-value=20 Score=29.80 Aligned_cols=28 Identities=18% Similarity=0.675 Sum_probs=12.3
Q ss_pred ccCCCCCccceeecCCCCccccCCCCCCC
Q 017649 180 RCKDDGCSGFLLRDSDDKGFTCQQCGLVR 208 (368)
Q Consensus 180 ~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 208 (368)
.|++..|...+... +...|.|..|+...
T Consensus 20 aC~~~~C~kKv~~~-~~~~y~C~~C~~~~ 47 (146)
T PF08646_consen 20 ACPNEKCNKKVTEN-GDGSYRCEKCNKTV 47 (146)
T ss_dssp E-TSTTTS-B-EEE-TTTEEEETTTTEEE
T ss_pred CCCCccCCCEeecC-CCcEEECCCCCCcC
Confidence 45433454444433 23346666666553
No 392
>PRK11827 hypothetical protein; Provisional
Probab=34.40 E-value=34 Score=23.98 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=25.7
Q ss_pred hhhhcCccCCCCCccceeecCCCCccccCCCCCCCC
Q 017649 174 AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 209 (368)
Q Consensus 174 ~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~ 209 (368)
.+++-+.|| .|+|.+..+.+.....|..|+....
T Consensus 4 ~LLeILaCP--~ckg~L~~~~~~~~Lic~~~~laYP 37 (60)
T PRK11827 4 RLLEIIACP--VCNGKLWYNQEKQELICKLDNLAFP 37 (60)
T ss_pred HHHhheECC--CCCCcCeEcCCCCeEECCccCeecc
Confidence 356678897 6889888766666788999997654
No 393
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=34.38 E-value=3.5e+02 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649 328 TEAVEILRITHGTNSPFMKELILKLEEAQAEASY 361 (368)
Q Consensus 328 ~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~ 361 (368)
+.-+.-+...||++||.+..+...++.++..+..
T Consensus 267 e~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 267 ESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3344555677999999999999999888776654
No 394
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=34.08 E-value=31 Score=29.97 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHhhhhcccc
Q 017649 60 EISINEIAENFSKLACNAH 78 (368)
Q Consensus 60 ~~~~~~~~~~~~~~~~N~~ 78 (368)
.++..++.+++.++.-+.+
T Consensus 47 gi~~~~VRk~L~~L~e~gL 65 (178)
T PRK06266 47 GIKLNTVRKILYKLYDARL 65 (178)
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 3455666777776665555
No 395
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.96 E-value=4.2e+02 Score=24.91 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649 222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP 301 (368)
Q Consensus 222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp 301 (368)
++.......+..|++.+....|++++.-.....-.++. -...+++........+...-.++++..++..+.. .+..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeR 142 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILDYISTSKNMDLLQEFYETTLDALKDA--KNER 142 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcce
Confidence 33344445567788988888888877643322222211 1233344433333344555556667667666522 2222
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 342 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h 342 (368)
.--..-.+||++++..|++..-.+.+++...-.+..-|.+.
T Consensus 143 LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 143 LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 21223357899999999998888888887777777777764
No 396
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=32.83 E-value=26 Score=23.27 Aligned_cols=28 Identities=21% Similarity=0.719 Sum_probs=17.0
Q ss_pred cCccCCCCCc-cceeecCCCCccccCCCCC
Q 017649 178 GYRCKDDGCS-GFLLRDSDDKGFTCQQCGL 206 (368)
Q Consensus 178 ~~~C~~~~C~-g~~~~~~~~~~~~C~~C~~ 206 (368)
.-.||++.|+ |.+...- ...+.|-+||.
T Consensus 18 rk~CP~~~CG~GvFMA~H-~dR~~CGKCg~ 46 (47)
T PF01599_consen 18 RKECPSPRCGAGVFMAEH-KDRHYCGKCGY 46 (47)
T ss_dssp SEE-TSTTTTSSSEEEE--SSEEEETTTSS
T ss_pred hhcCCCcccCCceEeeec-CCCccCCCccc
Confidence 3468888886 4444433 23688999986
No 397
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.76 E-value=96 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 252 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~ 252 (368)
...+...|...-..|++++|..+|..+++.+..
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 344555666666778999999999999887543
No 398
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=32.34 E-value=32 Score=22.43 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=5.3
Q ss_pred ccccCCCCCC
Q 017649 198 GFTCQQCGLV 207 (368)
Q Consensus 198 ~~~C~~C~~~ 207 (368)
..+|+.||..
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 3555555553
No 399
>PRK05685 fliS flagellar protein FliS; Validated
Probab=32.18 E-value=2.8e+02 Score=22.59 Aligned_cols=81 Identities=5% Similarity=-0.008 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-HHHHHHHHHHHHh-------------hhhHHHH
Q 017649 216 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILME-------------LEDWKEA 281 (368)
Q Consensus 216 ~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l-~~~~~~La~~~~~-------------~g~~~~A 281 (368)
+.+.+-...+.|......|+++++-....++..+...+...-+... .....+|..+|.. ....+++
T Consensus 31 Lydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d~~~l~ev 110 (132)
T PRK05685 31 LYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLEANLRNDVQAIDEV 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444555556677777889998887777776665443322222222 2344555555532 1334555
Q ss_pred HHHHHhhhhhHHhhc
Q 017649 282 LAYCQLTIPVYQRVY 296 (368)
Q Consensus 282 l~~~~~~l~~~e~~~ 296 (368)
..+.....+.++.+-
T Consensus 111 ~~il~~LreaW~~i~ 125 (132)
T PRK05685 111 EGLLREIKEAWKQIP 125 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 400
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=32.16 E-value=8.7 Score=40.24 Aligned_cols=62 Identities=18% Similarity=0.432 Sum_probs=42.2
Q ss_pred HHHhcCCCeEeeccccCCcCcCCcchhhhhhhcCccCCCCCccceeecCCCCccccCCCCCCCCHHHHHHH
Q 017649 146 KALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKI 216 (368)
Q Consensus 146 ~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~ 216 (368)
+.|+ .|--.|.|+.|.+. .+|.++ .+|....|..-+.+-.+...-+|+.|+....+..+..+
T Consensus 635 EElk-~yK~~LkCs~Cn~R------~Kd~vI--~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 635 EELK-EYKELLKCSVCNTR------WKDAVI--TKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred HHHH-HHHhceeCCCccCc------hhhHHH--HhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 4455 67779999999964 234443 36766666555554445566789999998887766543
No 401
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.74 E-value=5.5e+02 Score=25.83 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhh
Q 017649 324 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 362 (368)
Q Consensus 324 ~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~ 362 (368)
+.-++.-+..+...||++||.++++...++.++..+...
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 444566666777899999999999999999888776554
No 402
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=31.27 E-value=2.1e+02 Score=20.84 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 254 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l 254 (368)
+...++..|...-..|++++|..+|..++..+...+
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~ 40 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL 40 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344566667777788999999999999888765543
No 403
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=31.17 E-value=32 Score=21.37 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=18.5
Q ss_pred CccCCCCCccceeecCCCCccccCCCCCCC
Q 017649 179 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 208 (368)
Q Consensus 179 ~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 208 (368)
+.|+. |++. ....+...+.|..||+..
T Consensus 9 ~~C~~--C~~~-~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 9 EPCPV--CGSR-WFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred CcCCC--CCCe-EeEccCCEEEhhhCceEc
Confidence 44864 7776 444555678999999854
No 404
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.93 E-value=5.5e+02 Score=29.21 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred eccccCCcCcCCcchhhhhhhcCccCCCCC-------------ccceeecCCCCccccCCCCCCCC--------------
Q 017649 157 TCPRCIKLGQFDDIQESAILEGYRCKDDGC-------------SGFLLRDSDDKGFTCQQCGLVRS-------------- 209 (368)
Q Consensus 157 ~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C-------------~g~~~~~~~~~~~~C~~C~~~~~-------------- 209 (368)
.|.-|.+--+.++ ...|..+.| .|..+-.++....+|+.|-.-..
T Consensus 1096 ~C~qCqel~WGdP--------~~~C~aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdqCaRgy~G~fP~C~PCh~CF~ 1167 (1758)
T KOG0994|consen 1096 TCSQCQELYWGDP--------NEKCRACDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQCARGYSGQFPVCVPCHECFQ 1167 (1758)
T ss_pred chhHHHHhhcCCC--------CCCceecCCCCCCCCCCCccccCCceeecCCCCCcchhhhhhhhcCCCCCCcchHHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHH
Q 017649 210 --KEEIKKIASEVNILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY 284 (368)
Q Consensus 210 --~~~~~~~~~~~~~l~~~a~~~~~~g---~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~ 284 (368)
..-+.++......+.+.|..+...| -|..-....++-+...+.+|...++....+. +...|.+.
T Consensus 1168 ~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~-----------~l~~~~~~ 1236 (1758)
T KOG0994|consen 1168 TWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIA-----------QLASATES 1236 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHH-----------HHHHHHHH
Q ss_pred HHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649 285 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ 356 (368)
Q Consensus 285 ~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~ 356 (368)
+++.+.... -.|+.+...+.+...+...-.+.++-++...-.-...++++.+++..++
T Consensus 1237 lr~~l~~~~--------------e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1237 LRRQLQALT--------------EDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHH--------------hhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
No 405
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.72 E-value=1.2e+02 Score=29.95 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=40.8
Q ss_pred HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc--cCC------CCchHH---HHHHHHHHHHHHHhhh
Q 017649 304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGT------NSPFMK---ELILKLEEAQAEASYK 362 (368)
Q Consensus 304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~--~G~------~hp~~~---~l~~~L~~~~~el~~~ 362 (368)
+....++|.-+-.+++.++|+.+|++++..+..- -|. ..|.+. .++++|.+.+.++.++
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~R 91 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHR 91 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888999999999999999877651 121 234444 4556777777766654
No 406
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.66 E-value=3.1e+02 Score=29.35 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=21.7
Q ss_pred hhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649 333 ILRITHGTNSPFMKELILKLEEAQAEASY 361 (368)
Q Consensus 333 i~~~~~G~~hp~~~~l~~~L~~~~~el~~ 361 (368)
-+...||++||.+..+...++.+..++..
T Consensus 329 ~l~~~~~~~hP~v~~l~~~~~~L~~~~~~ 357 (726)
T PRK09841 329 EISQLYKKDHPTYRALLEKRQTLEQERKR 357 (726)
T ss_pred HHHHHhcccCchHHHHHHHHHHHHHHHHH
Confidence 34457899999999998887777655543
No 407
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=30.39 E-value=2.6e+02 Score=24.32 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhHHhhcC---CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649 268 LIKILMELEDWKEALAYCQLTIPVYQRVYP---QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 344 (368)
Q Consensus 268 La~~~~~~g~~~~Al~~~~~~l~~~e~~~g---~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~ 344 (368)
++++-.+.|-.+.-..+++ .+.++++| |+||..|..+.|+..-...+| ..|-..=-||++-++..-|..+.-
T Consensus 54 ~MrIaE~aGLvd~larl~r---P~~~~LFpdVpp~hpamG~i~~N~sAN~lGLg--NAATPlGlKAMeelqeiN~~ks~A 128 (206)
T COG2715 54 LMRIAEKAGLVDLLARLLR---PLLRRLFPDVPPGHPAMGYILMNMSANMLGLG--NAATPLGLKAMEELQEINPNKSTA 128 (206)
T ss_pred HHHHHHHhcHHHHHHHHHH---HHHHHhCCCCCcCCchHHHHHHHHHHHhcCCC--cccCchhHHHHHHHHHhCCCCCch
Confidence 3444444444443333333 34456655 999999999998865555555 444444455666555554444443
Q ss_pred H
Q 017649 345 M 345 (368)
Q Consensus 345 ~ 345 (368)
+
T Consensus 129 s 129 (206)
T COG2715 129 S 129 (206)
T ss_pred h
Confidence 3
No 408
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.88 E-value=1.2e+02 Score=24.17 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=18.4
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhh
Q 017649 268 LIKILMELEDWKEALAYCQLTIPV 291 (368)
Q Consensus 268 La~~~~~~g~~~~Al~~~~~~l~~ 291 (368)
.|..+...|++-+|+++.+.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH
Confidence 355677789999999988877753
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.20 E-value=4.5e+02 Score=24.09 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhH-HHHHHHHHhhhhhHH-hhcCC
Q 017649 221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW-KEALAYCQLTIPVYQ-RVYPQ 298 (368)
Q Consensus 221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~-~~Al~~~~~~l~~~e-~~~g~ 298 (368)
.-+..-|..+...|.+.-|.++...+++..+..-.+.+ -.....|+.++...+.- .+-..+..+++.-.+ .-.+.
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~ 87 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKF 87 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCC
Confidence 33455666677777887777776665554433111111 22335566666544321 123344444444331 11224
Q ss_pred CChHHHHHHhhhhhHhhhcCChHHHHHHHH
Q 017649 299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMT 328 (368)
Q Consensus 299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~ 328 (368)
.||.+ ...+|..++..|++.+|+.++-
T Consensus 88 Gdp~L---H~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPEL---HHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHH---HHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHhhccHHHHHHHHH
Confidence 45543 5567888999999999998864
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.09 E-value=75 Score=31.37 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=42.0
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 295 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~ 295 (368)
--|+|..|++..+.+.-....++..--.-...+.+.++-+|+-+++|.+|++.....+....+.
T Consensus 134 LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 134 LLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred hccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888887766543222223322222234567889999999999999999988877544433
No 411
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.04 E-value=5.4e+02 Score=24.92 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649 267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN 341 (368)
Q Consensus 267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~ 341 (368)
-+..+..+.+|.++|++++++.++-....--| -.+.......|.++...|+..++.+.+.+...++....|-+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~ 152 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT 152 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC
Confidence 34444555679999999999998766544333 23445556678888899999999999999888777665543
No 412
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=28.37 E-value=5.2e+02 Score=24.56 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=30.2
Q ss_pred HHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhhhccCC
Q 017649 327 MTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKD 367 (368)
Q Consensus 327 l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~~~~~~ 367 (368)
..+.+.+++...-..-..|...+.+|+.+..++|.++||++
T Consensus 195 qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRssqs 235 (426)
T KOG2008|consen 195 QKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSSQS 235 (426)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33455555555444455678888999999999999999975
No 413
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=28.33 E-value=5.4e+02 Score=25.01 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE 332 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~ 332 (368)
--.|+.+|.+.++|.+|+.+...++.-++++-....- .-....=.++|+.+....+|...+.-|-.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL--vev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL--VEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce--eeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 3458889999999999999999988888777443221 11112224455555555555555554443
No 414
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=27.96 E-value=48 Score=20.04 Aligned_cols=10 Identities=30% Similarity=0.880 Sum_probs=5.2
Q ss_pred ccccCCCCCC
Q 017649 198 GFTCQQCGLV 207 (368)
Q Consensus 198 ~~~C~~C~~~ 207 (368)
..+|..||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 3566666654
No 415
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=27.93 E-value=1.4e+02 Score=27.78 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHH-HHHHHHHHHHHHHhh
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK-ELILKLEEAQAEASY 361 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~-~l~~~L~~~~~el~~ 361 (368)
.+.......|.++...|..++|.+|.+.....+. ..+..+++.. .+...|++....++.
T Consensus 196 ~l~~~Kl~yA~~Lae~G~~~~A~kY~d~i~~~lk-~~~~~~~~~~~~l~~~l~~l~~~~~~ 255 (284)
T PF12931_consen 196 HLQPYKLQYASLLAEQGLLSEALKYCDAIASSLK-SLPKNSPYHHQNLAQQLQELSSRLSE 255 (284)
T ss_dssp CCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-TS-TTSHHHH-HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-hCCccChhhHHHHHHHHHHHHHHhcc
Confidence 3334444668888899999999999888877776 4566667666 677777766555543
No 416
>COG2158 Uncharacterized protein containing a Zn-finger-like domain [General function prediction only]
Probab=27.37 E-value=1.1e+02 Score=24.13 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=22.2
Q ss_pred eeecCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q 017649 190 LLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNI 222 (368)
Q Consensus 190 ~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 222 (368)
+...++.+.|.|..|--.-..+.++.+++++..
T Consensus 54 i~~~~G~~VwSC~dC~~iH~ke~~~~ilr~ll~ 86 (112)
T COG2158 54 ISDSNGRKVWSCSDCHWIHRKEGAEEILRELLE 86 (112)
T ss_pred eEcCCCCEEeeccccceecccchHHHHHHHHHH
Confidence 333445668999999877776666666655443
No 417
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=27.33 E-value=2.3e+02 Score=25.14 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=37.0
Q ss_pred HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHH
Q 017649 229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY 284 (368)
Q Consensus 229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~ 284 (368)
.+....+.++++.++-+++++.. +.+..=......|+.++..+|+++.|.-+
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 45566788999999988887643 22122234566799999999999998543
No 418
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.15 E-value=27 Score=28.08 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=8.5
Q ss_pred ccCCCCCCCCHH
Q 017649 200 TCQQCGLVRSKE 211 (368)
Q Consensus 200 ~C~~C~~~~~~~ 211 (368)
.|..||......
T Consensus 42 ~C~aCG~dyg~~ 53 (126)
T COG5349 42 ACEACGLDYGFA 53 (126)
T ss_pred hhhhccccccCC
Confidence 588888866543
No 419
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.01 E-value=5.6e+02 Score=26.90 Aligned_cols=86 Identities=8% Similarity=-0.044 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc--C--CCChHHH---HH-----Hhhhhh-HhhhcCChHHHHHHHHHHH
Q 017649 265 REKLIKILMELEDWKEALAYCQLTIPVYQRVY--P--QFHPLLG---LQ-----YYTCGK-LEWFLGDTENAIKSMTEAV 331 (368)
Q Consensus 265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~--g--~~hp~~~---~~-----l~~La~-l~~~~g~~~eA~~~l~kAl 331 (368)
...|+.+.+..+++..|.+...++.+.---++ - .+++.+. .. .+|+|- .++..|+++++...|.+.-
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 45688888888899888887777654222111 1 2222111 00 112221 2356799999999888763
Q ss_pred -----HhhccccCCCCchHHHHHHHH
Q 017649 332 -----EILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 332 -----~i~~~~~G~~hp~~~~l~~~L 352 (368)
..+-++|+|+ .+.++..+.
T Consensus 749 r~peAal~ArtYlps--~vs~iv~~w 772 (794)
T KOG0276|consen 749 RLPEAALFARTYLPS--QVSRIVELW 772 (794)
T ss_pred cCcHHHHHHhhhChH--HHHHHHHHH
Confidence 3556778883 345555444
No 420
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.76 E-value=54 Score=23.17 Aligned_cols=33 Identities=21% Similarity=0.554 Sum_probs=20.5
Q ss_pred cCccCCCCCccceeecCCCCccccCCCCCCCCHHH
Q 017649 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEE 212 (368)
Q Consensus 178 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~ 212 (368)
+-.|+ .|+...........+.|+.||...+.+.
T Consensus 28 Sq~C~--~CG~~~~~~~~~r~~~C~~Cg~~~~rD~ 60 (69)
T PF07282_consen 28 SQTCP--RCGHRNKKRRSGRVFTCPNCGFEMDRDV 60 (69)
T ss_pred ccCcc--CcccccccccccceEEcCCCCCEECcHH
Confidence 34454 4544443323456789999999887653
No 421
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=26.40 E-value=2.8e+02 Score=25.20 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=37.3
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
+|.-.++.|.+-+.+-+.--+.-.+++.+. -+|.+..+.+-|+-.+...|+|+.|.+....+++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa-i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALA-IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhh-cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 344455555544444332222222333222 2566777777788777888999999887766554
No 422
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=2.1e+02 Score=26.96 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh----------------hHHhhcCCCChHHHHHHhhhhhHh
Q 017649 258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIP----------------VYQRVYPQFHPLLGLQYYTCGKLE 314 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~----------------~~e~~~g~~hp~~~~~l~~La~l~ 314 (368)
++.-..++..|+..+...|+.+.|++++-..+. ++ ..+|+.||.+.....+|+.++
T Consensus 232 dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f-~~~g~~Dp~~~~~RRkL~slL 303 (304)
T COG3118 232 DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELF-EAFGPADPLVLAYRRKLYSLL 303 (304)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHhh
Confidence 444456778899999999999999886544332 22 356777787766666666554
No 423
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=26.29 E-value=2.5e+02 Score=20.08 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc
Q 017649 220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 254 (368)
Q Consensus 220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l 254 (368)
...+...|...-..|++++|+.+|..++......+
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34455566666777999999999999887654433
No 424
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.21 E-value=1.7e+02 Score=30.90 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH--HHHhhhhhHhhhcCChHHHHHHHHH
Q 017649 268 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG--LQYYTCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 268 La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~--~~l~~La~l~~~~g~~~eA~~~l~k 329 (368)
+.+...+.++|.+|..+.++.-+..+.+|-|+-.-++ -..-+--++++..|+..||...+++
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 3444556788889888776654444433332211111 1112223344445555555555444
No 425
>COG1084 Predicted GTPase [General function prediction only]
Probab=26.15 E-value=3.2e+02 Score=26.32 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=58.4
Q ss_pred ccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-CCChHHHHHHh--hhhhHhhhcCChHHHHHHHHH
Q 017649 253 LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYY--TCGKLEWFLGDTENAIKSMTE 329 (368)
Q Consensus 253 ~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g-~~hp~~~~~l~--~La~l~~~~g~~~eA~~~l~k 329 (368)
-+||++..+..+....-+.-..++....|...-+++..-|-+.+. ..+|..+..+. -+|.+..-..+..+.+.++.+
T Consensus 74 ~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~ 153 (346)
T COG1084 74 DLHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRK 153 (346)
T ss_pred ccChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 367777776666555545555556666666666666655555544 44666665554 346666666788899999999
Q ss_pred HHHhhccccCCC
Q 017649 330 AVEILRITHGTN 341 (368)
Q Consensus 330 Al~i~~~~~G~~ 341 (368)
|...++....-+
T Consensus 154 ~r~~l~~LP~Id 165 (346)
T COG1084 154 ARDHLKKLPAID 165 (346)
T ss_pred HHHHHhcCCCCC
Confidence 999888776544
No 426
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=26.14 E-value=2e+02 Score=24.98 Aligned_cols=42 Identities=21% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCeEeeccccCCcCcCCcchhhhhhhcCccCCCCCcccee
Q 017649 142 MTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLL 191 (368)
Q Consensus 142 ~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~ 191 (368)
..+.+...++-+|.| +.|.-.-. ...++..+|.|| .|++.+.
T Consensus 102 k~~le~~~~~~~y~C--~~~~~r~s----fdeA~~~~F~Cp--~Cg~~L~ 143 (176)
T COG1675 102 KRKLEKETENNYYVC--PNCHVKYS----FDEAMELGFTCP--KCGEDLE 143 (176)
T ss_pred HHHHHhhccCCceeC--CCCCCccc----HHHHHHhCCCCC--CCCchhh
Confidence 344455677788998 77776421 233556667775 4655553
No 427
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=26.12 E-value=39 Score=26.99 Aligned_cols=27 Identities=19% Similarity=0.625 Sum_probs=20.2
Q ss_pred CCccceeecC--CCCccccCCCCCCCCHH
Q 017649 185 GCSGFLLRDS--DDKGFTCQQCGLVRSKE 211 (368)
Q Consensus 185 ~C~g~~~~~~--~~~~~~C~~C~~~~~~~ 211 (368)
+|++.+.|.. ....+.|..||......
T Consensus 7 ~Cgsll~p~~~~~~~~l~C~kCgye~~~~ 35 (113)
T COG1594 7 KCGSLLYPKKDDEGGKLVCRKCGYEEEAS 35 (113)
T ss_pred CccCeeEEeEcCCCcEEECCCCCcchhcc
Confidence 6889888854 34578999999876544
No 428
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=26.11 E-value=1.1e+02 Score=17.67 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=18.9
Q ss_pred HHhhhhhHhhhc----CChHHHHHHHHHHHH
Q 017649 306 QYYTCGKLEWFL----GDTENAIKSMTEAVE 332 (368)
Q Consensus 306 ~l~~La~l~~~~----g~~~eA~~~l~kAl~ 332 (368)
.++.||..+..- .+..+|..++++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 456677766532 367889999998865
No 429
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.99 E-value=1.7e+02 Score=28.13 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=36.6
Q ss_pred hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649 232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 293 (368)
Q Consensus 232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e 293 (368)
--|+|..|+.-+.+++. +.|. .+.++..=|.++..+.+|.+|+.+|+..+.+..
T Consensus 131 ~l~NyRs~l~Dcs~al~-----~~P~---h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 131 YLGNYRSALNDCSAALK-----LKPT---HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHh-----cCcc---hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 34455555554444433 3344 455667778888999999999999998876654
No 430
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.73 E-value=5e+02 Score=23.49 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=15.2
Q ss_pred cccHHHHHHHHHHHHHhhhhHHHH
Q 017649 258 SVNLMQTREKLIKILMELEDWKEA 281 (368)
Q Consensus 258 h~~l~~~~~~La~~~~~~g~~~~A 281 (368)
|+.+..++..|+.+....+++..+
T Consensus 71 ~~~L~~a~~kLg~v~~~v~dl~~~ 94 (230)
T cd07625 71 HHGLGNLYEKFGKVLTAVGDIDSI 94 (230)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHH
Confidence 556666666777666666665543
No 431
>PRK00420 hypothetical protein; Validated
Probab=25.69 E-value=2.9e+02 Score=22.00 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=17.3
Q ss_pred cCccCCCCCccceeecCCCCccccCCCCCCCC
Q 017649 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 209 (368)
Q Consensus 178 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~ 209 (368)
+-.|| .|+.++... ......|+.||....
T Consensus 23 ~~~CP--~Cg~pLf~l-k~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 23 SKHCP--VCGLPLFEL-KDGEVVCPVHGKVYI 51 (112)
T ss_pred cCCCC--CCCCcceec-CCCceECCCCCCeee
Confidence 45665 466555533 234578999997554
No 432
>PF12773 DZR: Double zinc ribbon
Probab=25.65 E-value=60 Score=21.29 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=18.2
Q ss_pred cCccCCCCCccceeecCCCCccccCCCCCCCCH
Q 017649 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 210 (368)
Q Consensus 178 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~ 210 (368)
+-.|+ .|+..+. ..+...+.|..||...+.
T Consensus 12 ~~fC~--~CG~~l~-~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 12 AKFCP--HCGTPLP-PPDQSKKICPNCGAENPP 41 (50)
T ss_pred ccCCh--hhcCChh-hccCCCCCCcCCcCCCcC
Confidence 34564 5655554 233456789999987653
No 433
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=25.57 E-value=7.7e+02 Score=25.61 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh-cCCCChHHHHHHhhhhhHh
Q 017649 236 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-YPQFHPLLGLQYYTCGKLE 314 (368)
Q Consensus 236 ~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~-~g~~hp~~~~~l~~La~l~ 314 (368)
...++.+|.+++...+..+...|.+= +.-++..|.+.+++.+|+.....+-++.+.. |..+.-++-..++.+|.-+
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYP---Yty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneL 371 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYP---YTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANEL 371 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHH---HHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcccc---ceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHH
Confidence 34567888888877777777655542 3347777888899999998877766555432 4455555545555554433
No 434
>COG1781 PyrI Aspartate carbamoyltransferase, regulatory subunit [Nucleotide transport and metabolism]
Probab=25.39 E-value=41 Score=28.21 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=13.1
Q ss_pred CccccCCCCCCCCHHHH
Q 017649 197 KGFTCQQCGLVRSKEEI 213 (368)
Q Consensus 197 ~~~~C~~C~~~~~~~~~ 213 (368)
..++|.=|+...+.+++
T Consensus 134 ~~lrC~YCe~~~~~~~v 150 (153)
T COG1781 134 LALRCKYCEKTFSEDEV 150 (153)
T ss_pred cEEEEEecCcEechhhh
Confidence 45889999998876654
No 435
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.34 E-value=5.5e+02 Score=23.84 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC---CCChHH-------HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---QFHPLL-------GLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g---~~hp~~-------~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
++..=+.-+..+|+|++|..-|+.++...+.+-- |..|.- --.+.|..+.+...|+|-+++++ .-+|
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh---~sei 256 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH---CSEI 256 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH---HHHH
Confidence 3344455567789999999999999887775533 444432 12445667777777877777554 4445
Q ss_pred hccccCCCCchHH
Q 017649 334 LRITHGTNSPFMK 346 (368)
Q Consensus 334 ~~~~~G~~hp~~~ 346 (368)
+....|..-.+.+
T Consensus 257 L~~~~~nvKA~fr 269 (329)
T KOG0545|consen 257 LRHHPGNVKAYFR 269 (329)
T ss_pred HhcCCchHHHHHH
Confidence 5454444433333
No 436
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=25.27 E-value=4.6e+02 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=27.1
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
+.-.+.+.+..|......+++.+|+..++.|.+.+.
T Consensus 243 ~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~ 278 (353)
T cd09246 243 AYFRAEALYRAAKDLHEKEDIGEEIARLRAASDALA 278 (353)
T ss_pred HHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHH
Confidence 334566777778888888899999999998876543
No 437
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.03 E-value=4.2e+02 Score=22.36 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=34.5
Q ss_pred hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649 231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 290 (368)
Q Consensus 231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~ 290 (368)
...++++++..++..+ +++.|..+.+ ...-+.+++..|+|.+|+.+++.+.+
T Consensus 21 L~~~d~~D~e~lLdAL-----rvLrP~~~e~---d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDAL-----RVLRPNLKEL---DMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHH-----HHhCCCcccc---chhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3456777776665433 3566665543 33455678888999999998887664
No 438
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.95 E-value=1.1e+02 Score=26.61 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=9.7
Q ss_pred CCCCCCHHHHHHHHh
Q 017649 57 QWPEISINEIAENFS 71 (368)
Q Consensus 57 ~~~~~~~~~~~~~~~ 71 (368)
.....+.+++...++
T Consensus 33 ~~g~~tdeeLA~~Lg 47 (178)
T PRK06266 33 KKGEVTDEEIAEQTG 47 (178)
T ss_pred HcCCcCHHHHHHHHC
Confidence 334667777777765
No 439
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=24.92 E-value=6.2e+02 Score=24.29 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH 338 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~ 338 (368)
.+...+..|......+++.+|+.++++|.+.++...
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 345666667777778999999999998888777554
No 440
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.53 E-value=57 Score=33.30 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=7.7
Q ss_pred ccccCCCCCC
Q 017649 198 GFTCQQCGLV 207 (368)
Q Consensus 198 ~~~C~~C~~~ 207 (368)
++.|+.||..
T Consensus 253 ~~~Cp~C~s~ 262 (505)
T TIGR00595 253 PKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCC
Confidence 5789999873
No 441
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.52 E-value=49 Score=35.03 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=14.8
Q ss_pred ccccCCCCCCC-C--HHHHHHHHHHHHHHH
Q 017649 198 GFTCQQCGLVR-S--KEEIKKIASEVNILS 224 (368)
Q Consensus 198 ~~~C~~C~~~~-~--~~~~~~~~~~~~~l~ 224 (368)
.|.|+.||... . .--.+++.++++..+
T Consensus 422 p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~F 451 (665)
T PRK14873 422 DWRCPRCGSDRLRAVVVGARRTAEELGRAF 451 (665)
T ss_pred CccCCCCcCCcceeeeccHHHHHHHHHHHC
Confidence 58899998742 1 112344555554443
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=24.49 E-value=1.6e+02 Score=18.16 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=17.5
Q ss_pred HhhhhhHhhhcCChHHHHHHHH
Q 017649 307 YYTCGKLEWFLGDTENAIKSMT 328 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~ 328 (368)
++.+|-.+...|++++|+.++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4667888889999999999954
No 443
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=23.91 E-value=45 Score=23.29 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=17.5
Q ss_pred hhcCccCCCCCcc-ceeecCCCCccccCCCCCCC
Q 017649 176 LEGYRCKDDGCSG-FLLRDSDDKGFTCQQCGLVR 208 (368)
Q Consensus 176 ~~~~~C~~~~C~g-~~~~~~~~~~~~C~~C~~~~ 208 (368)
|...+|+ .|.+ .++.+..+....|..||...
T Consensus 9 F~~VkCp--~C~n~q~vFsha~t~V~C~~Cg~~L 40 (59)
T PRK00415 9 FLKVKCP--DCGNEQVVFSHASTVVRCLVCGKTL 40 (59)
T ss_pred EEEEECC--CCCCeEEEEecCCcEEECcccCCCc
Confidence 4456665 3432 22334445567888888755
No 444
>PHA00626 hypothetical protein
Probab=23.51 E-value=1e+02 Score=21.26 Aligned_cols=17 Identities=29% Similarity=0.782 Sum_probs=13.1
Q ss_pred CCccccCCCCCCCCHHH
Q 017649 196 DKGFTCQQCGLVRSKEE 212 (368)
Q Consensus 196 ~~~~~C~~C~~~~~~~~ 212 (368)
+..+.|..||...+.+.
T Consensus 21 snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 21 SDDYVCCDCGYNDSKDA 37 (59)
T ss_pred CcceEcCCCCCeechhh
Confidence 45689999999887653
No 445
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=23.23 E-value=72 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.521 Sum_probs=15.8
Q ss_pred cCccCCCCCccceeecCCCCccccCCCCCCC
Q 017649 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVR 208 (368)
Q Consensus 178 ~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~ 208 (368)
.+.|+ .|+..-+.-.....|.|..|+..+
T Consensus 35 ky~Cp--~Cgk~~vkR~a~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 35 KYTCP--FCGKTSVKRVATGIWKCKKCGKKF 63 (90)
T ss_dssp -BEES--SSSSSEEEEEETTEEEETTTTEEE
T ss_pred CCcCC--CCCCceeEEeeeEEeecCCCCCEE
Confidence 45564 343322222234569999999754
No 446
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=23.10 E-value=4.8e+02 Score=22.32 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=35.7
Q ss_pred cCCCChHHHHHHhhhhhHhhhcCCh--------HHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649 296 YPQFHPLLGLQYYTCGKLEWFLGDT--------ENAIKSMTEAVEILRITHGTNSPFMKELILKL 352 (368)
Q Consensus 296 ~g~~hp~~~~~l~~La~l~~~~g~~--------~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L 352 (368)
+-...|..+..++-+-.+|...|.+ +-|..+|++-+.+.+.. ++..+.++....
T Consensus 83 ~~S~NpiY~LilNgfk~lY~rvg~~YFs~~~aR~la~~fY~~L~~~~~~~---~~~~v~~~vr~y 144 (164)
T PF07840_consen 83 FASGNPIYGLILNGFKGLYSRVGRYYFSNPEARELALNFYRELLEACEKG---DYDQVPDVVRQY 144 (164)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCT----CCGHHHHHHHH
T ss_pred HhcCCCchhhHHcccHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 3478899999888888888777654 55667788777766554 555555554443
No 447
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=23.02 E-value=1.6e+02 Score=26.05 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHhhccccCCCCchHHHHHHHHHHHHHHHhhh
Q 017649 331 VEILRITHGTNSPFMKELILKLEEAQAEASYK 362 (368)
Q Consensus 331 l~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~ 362 (368)
..-+++.||+.|+.-.++...|+.+++||+++
T Consensus 99 atKverVHgd~p~~p~gl~~~L~~l~~eL~~H 130 (221)
T COG2846 99 ATKVERVHGDKPSCPAGLAELLEALKEELESH 130 (221)
T ss_pred HHHHHHHhCCCCCcchhHHHHHHHHHHHHHHH
Confidence 33456789999999999999999998888764
No 448
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=22.98 E-value=50 Score=28.80 Aligned_cols=22 Identities=23% Similarity=0.652 Sum_probs=15.1
Q ss_pred CCccceeecCCCCccccCCCCCCC
Q 017649 185 GCSGFLLRDSDDKGFTCQQCGLVR 208 (368)
Q Consensus 185 ~C~g~~~~~~~~~~~~C~~C~~~~ 208 (368)
+|.+.+.. .....+|+.||.+-
T Consensus 154 rC~~~L~~--~~~~l~Cp~Cg~tE 175 (188)
T COG1096 154 RCRAPLVK--KGNMLKCPNCGNTE 175 (188)
T ss_pred CCCcceEE--cCcEEECCCCCCEE
Confidence 56676665 34567899998743
No 449
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=22.96 E-value=58 Score=21.88 Aligned_cols=24 Identities=25% Similarity=0.796 Sum_probs=15.4
Q ss_pred ccCCCCCcc-ceeecCCCCccccCCCCCC
Q 017649 180 RCKDDGCSG-FLLRDSDDKGFTCQQCGLV 207 (368)
Q Consensus 180 ~C~~~~C~g-~~~~~~~~~~~~C~~C~~~ 207 (368)
-|| .|+. ++.+. ...+.|..||.+
T Consensus 22 fCP--~Cg~~~m~~~--~~r~~C~~Cgyt 46 (50)
T PRK00432 22 FCP--RCGSGFMAEH--LDRWHCGKCGYT 46 (50)
T ss_pred cCc--CCCcchhecc--CCcEECCCcCCE
Confidence 576 4654 44433 357899999975
No 450
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.83 E-value=8.4e+02 Score=25.04 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=30.8
Q ss_pred HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
..++.+++||.++.-+|.++.|.+.+.+|..++.
T Consensus 617 Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 617 ARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 3678899999999999999999999999998766
No 451
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=22.64 E-value=3.3e+02 Score=26.38 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=27.5
Q ss_pred ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649 300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI 336 (368)
Q Consensus 300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~ 336 (368)
+.-.+.+++..|..+...+++.+|+..++.|.+.++.
T Consensus 244 ~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~ 280 (353)
T cd09243 244 VFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNK 280 (353)
T ss_pred HHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 3344667777787777788889999998888876643
No 452
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=22.44 E-value=6.8e+02 Score=23.84 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Q 017649 211 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 250 (368)
Q Consensus 211 ~~~~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~ 250 (368)
+++..+...+..+++.|..+-..|+.++|.+++..+..+.
T Consensus 122 ~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk 161 (319)
T KOG0796|consen 122 EKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELK 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 4566666778888889999999999999999888877665
No 453
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=52 Score=31.06 Aligned_cols=32 Identities=34% Similarity=0.848 Sum_probs=26.3
Q ss_pred hhcCccCCCCCccceeecCCCCccccCC-CCCC
Q 017649 176 LEGYRCKDDGCSGFLLRDSDDKGFTCQQ-CGLV 207 (368)
Q Consensus 176 ~~~~~C~~~~C~g~~~~~~~~~~~~C~~-C~~~ 207 (368)
+.+..||++.|+..++++++.....|.. ||..
T Consensus 313 ~gGVlCP~pgCG~gll~EPD~rkvtC~~gCgf~ 345 (446)
T KOG0006|consen 313 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGCGFA 345 (446)
T ss_pred cCCEecCCCCCCcccccCCCCCcccCCCCchhH
Confidence 4578999999998888888888888876 8763
No 454
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=21.97 E-value=2.1e+02 Score=27.38 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 255 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 255 ~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.|....-+...-+.|.-....|+.++|..+.+.++. +.|.||.. +.++|...-.-.+.-+|-.+|.+|+.|
T Consensus 109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla-----laP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALA-----LAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHh-----cCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeee
No 455
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=21.66 E-value=92 Score=24.27 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.0
Q ss_pred EEccCCCCCCeeEEeccCC
Q 017649 119 RAVQHVPKGAEVLISYIET 137 (368)
Q Consensus 119 ~a~~~i~~geel~~~Y~~~ 137 (368)
.+...++.|+.|+|.|...
T Consensus 44 KpS~~VK~GD~l~i~~~~~ 62 (100)
T COG1188 44 KPSKEVKVGDILTIRFGNK 62 (100)
T ss_pred ccccccCCCCEEEEEeCCc
Confidence 7888899999999999643
No 456
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=21.66 E-value=62 Score=22.06 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.6
Q ss_pred EEEEccCCCCCCeeEE
Q 017649 117 VVRAVQHVPKGAEVLI 132 (368)
Q Consensus 117 ~~~a~~~i~~geel~~ 132 (368)
+++|.++|++|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4678999999999875
No 457
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=21.43 E-value=4.9e+02 Score=26.32 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 017649 219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 287 (368)
Q Consensus 219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~ 287 (368)
++....+.|+-++++|++.++.-....+.+ + .| -..++.-++-++....+|.+|..+...
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~----i-aP----S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTK----I-AP----SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH----h-CC----cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 344555667778899999877654433332 2 23 245566788888889999999998665
No 458
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.09 E-value=1e+02 Score=33.04 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=13.4
Q ss_pred ccccCCCCCCCC---HHHHHHHHHHHHHHH
Q 017649 198 GFTCQQCGLVRS---KEEIKKIASEVNILS 224 (368)
Q Consensus 198 ~~~C~~C~~~~~---~~~~~~~~~~~~~l~ 224 (368)
+..|+.||...= ..-.+++.++++.++
T Consensus 475 p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 475 PQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred CCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 456777776510 112344555555544
No 459
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=20.90 E-value=3.7e+02 Score=25.83 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC--CCCchHHHHHHHHHHHHHHHhhhh
Q 017649 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG--TNSPFMKELILKLEEAQAEASYKL 363 (368)
Q Consensus 303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G--~~hp~~~~l~~~L~~~~~el~~~~ 363 (368)
.+...+..|......+++.+|+..|+.|.+.++..-. +....+.++...+.....+++.+|
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~~~~~~~l~~~i~~~l~~aekDN 316 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGEYVDVKDFAAKISRALTAAKKDN 316 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhcc
Confidence 3566667777777889999999999999886643321 111225555555555555555554
No 460
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.81 E-value=1.8e+02 Score=29.00 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh----------cCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRV----------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 333 (368)
Q Consensus 264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~----------~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i 333 (368)
.++.-|.+.+....|.+|+..+..+-+.+... |+--.-.+.|-||.|- +.....+|..-+.+|-+-
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLk----nitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLK----NITCLPDAEVRLVRARKG 240 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhc----ccccCChHHHHHHHHHHh
Confidence 34556677777888998888766554433211 1111122233333332 235678899999999999
Q ss_pred hccccCCCCchHHHH
Q 017649 334 LRITHGTNSPFMKEL 348 (368)
Q Consensus 334 ~~~~~G~~hp~~~~l 348 (368)
+...||.+|.-...+
T Consensus 241 f~~syGenl~Rl~~l 255 (568)
T KOG2561|consen 241 FERSYGENLSRLRSL 255 (568)
T ss_pred hhhhhhhhhHhhhhc
Confidence 999999988765444
No 461
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=20.77 E-value=1e+02 Score=18.46 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=16.0
Q ss_pred CCccceeecCCCCccccCCCCCC
Q 017649 185 GCSGFLLRDSDDKGFTCQQCGLV 207 (368)
Q Consensus 185 ~C~g~~~~~~~~~~~~C~~C~~~ 207 (368)
.|...+....+...++|..|...
T Consensus 6 ~C~t~L~yP~gA~~vrCs~C~~v 28 (31)
T TIGR01053 6 GCRTLLMYPRGASSVRCALCQTV 28 (31)
T ss_pred CCCcEeecCCCCCeEECCCCCeE
Confidence 46666665666677899988753
No 462
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=20.73 E-value=3.8e+02 Score=20.27 Aligned_cols=31 Identities=13% Similarity=-0.089 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q 017649 214 KKIASEVNILSKKTLALTSCGNHQEVVSTYK 244 (368)
Q Consensus 214 ~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~ 244 (368)
+.+.......++.|......|.+..+.....
T Consensus 2 ~~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~ 32 (118)
T PF05168_consen 2 QDWLEKAEEDLKAAEILLEEGDYNWAVFHAY 32 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556666777777887888888877765443
No 463
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.35 E-value=40 Score=20.57 Aligned_cols=12 Identities=25% Similarity=0.891 Sum_probs=9.0
Q ss_pred ccccCCCCCCCC
Q 017649 198 GFTCQQCGLVRS 209 (368)
Q Consensus 198 ~~~C~~C~~~~~ 209 (368)
.|+|..||...+
T Consensus 2 ~~~C~~CG~i~~ 13 (34)
T cd00729 2 VWVCPVCGYIHE 13 (34)
T ss_pred eEECCCCCCEeE
Confidence 488999988654
No 464
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=20.15 E-value=1e+02 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHhcCCCeEeeccccCCcCcCCcchhhhhhhcCccCCCCCccceeecC
Q 017649 147 ALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDS 194 (368)
Q Consensus 147 ~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~ 194 (368)
.-.+.-+|.| ++|...- +..+++-.+|.|| .|++.+...+
T Consensus 103 ~e~~~~~Y~C--p~c~~r~----tf~eA~~~~F~Cp--~Cg~~L~~~d 142 (158)
T TIGR00373 103 FETNNMFFIC--PNMCVRF----TFNEAMELNFTCP--RCGAMLDYLD 142 (158)
T ss_pred hccCCCeEEC--CCCCcEe----eHHHHHHcCCcCC--CCCCEeeecc
Confidence 3334456666 7776531 1233444567775 5666665433
No 465
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.10 E-value=95 Score=19.16 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=8.3
Q ss_pred CCccccCCCCCC
Q 017649 196 DKGFTCQQCGLV 207 (368)
Q Consensus 196 ~~~~~C~~C~~~ 207 (368)
.....|+.||..
T Consensus 24 ~~~~~CP~Cg~~ 35 (41)
T smart00834 24 DPLATCPECGGD 35 (41)
T ss_pred CCCCCCCCCCCc
Confidence 345678888873
No 466
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=20.02 E-value=6.5e+02 Score=25.05 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=54.4
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649 227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 306 (368)
Q Consensus 227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~ 306 (368)
|+...-.|+++.|.+.|+..+.. |. ..++.. ..|.---..+|+.+-|..|..++.... |.+.+.
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~d------PE-tRllGL-RgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA 190 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDD------PE-TRLLGL-RGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWA 190 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC------hH-HHHHhH-HHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchH
Confidence 44456778999998887765432 11 111111 112222234688888888877765422 344444
Q ss_pred HhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649 307 YYTCGKLEWFLGDTENAIKSMTEAVEILR 335 (368)
Q Consensus 307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~ 335 (368)
...+-......|+.+.|++++........
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 44333445578999999999887665433
Done!