BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017651
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/368 (84%), Positives = 336/368 (91%), Gaps = 2/368 (0%)
Query: 1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
MSLRP+ R EVRRNRYKVAVDA+EGRRRREDNMVEIRK++REESLLKKRREGLQ+Q
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
+ ++ KLESLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 63 ASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
RFV+FL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQA
Sbjct: 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
VWALGNVAGDSP+CRDLVL+ GAL+PLLAQLNE KLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240
Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
Q RPALPALA+L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300
Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
SVLIPALRTVGNIVTGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360
Query: 361 RDQIQVMI 368
+DQIQ +I
Sbjct: 361 KDQIQAVI 368
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
L+ + ++ +A WAL+ ++ GT++ + VI+ G P V+LL PS V A+ +G
Sbjct: 252 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311
Query: 186 N-VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP 244
N V GD + + ++ Q AL LL+ L + K S+ + A WT+SN G DQ++
Sbjct: 312 NIVTGDDAQTQCIIDHQ-ALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQA 366
Query: 245 ALPA-----LAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
+ A L L+ + + ++ +A WA+S S G++D+I+ ++ G L +LL P
Sbjct: 367 VINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 426
Query: 299 SPSVLIPALRTVGNIV 314
++ L + NI+
Sbjct: 427 DIRIVTVCLEGLENIL 442
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 44/176 (25%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----- 129
+LPA+ + S+D + +A LS + I+ VI++GV PR VE L+
Sbjct: 245 ALPALARLIHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVL 303
Query: 130 -------------DYPQLQF------------------------EAAWALTNIASGTSEN 152
D Q Q EA W ++NI +G +
Sbjct: 304 IPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQ 363
Query: 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN-VAGDSPRCRDLVLSQGALIPL 207
+ VI+ G + V LL + D++++A WA+ N +G S ++S+G + PL
Sbjct: 364 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/294 (88%), Positives = 276/294 (93%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
SLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+C
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
RDLVL+ GAL+PLLAQLNE KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+H
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
TGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQ +I
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 330
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
L+ + ++ +A WAL+ ++ GT++ + VI+ G P V+LL PS V A+ +G
Sbjct: 214 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 273
Query: 186 N-VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP 244
N V GD + + ++ Q AL LL+ L + K S+ + A WT+SN G DQ++
Sbjct: 274 NIVTGDDAQTQCIIDHQ-ALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQA 328
Query: 245 ALPA-----LAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
+ A L L+ + + ++ +A WA+S S G++D+I+ ++ G L +LL P
Sbjct: 329 VINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 388
Query: 299 SPSVLIPALRTVGNIV 314
++ L + NI+
Sbjct: 389 DIRIVTVCLEGLENIL 404
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 44/176 (25%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------ 128
+LPA+ + S+D + +A LS + I+ VI++GV PR VE L+
Sbjct: 207 ALPALARLIHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVL 265
Query: 129 ------------EDYPQLQF------------------------EAAWALTNIASGTSEN 152
D Q Q EA W ++NI +G +
Sbjct: 266 IPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQ 325
Query: 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN-VAGDSPRCRDLVLSQGALIPL 207
+ VI+ G + V LL + D++++A WA+ N +G S ++S+G + PL
Sbjct: 326 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 381
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 251/369 (68%), Gaps = 13/369 (3%)
Query: 10 EVRRNRYKVA--VDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFXXXX 62
E RR +K ADE RRRR+ VE+RK KR+E+L K+R +G S +
Sbjct: 15 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63 XXSNLNLQTKLE-SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
++ ++L+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR
Sbjct: 75 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 122 FVEFLMREDYPQ-LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
VEF MRE+ P+ LQ EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA
Sbjct: 135 LVEF-MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPF 239
+WALGNVAGDS RD VL A+ P+L N K S++R ATWTLSN CRG KPQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
V ALP LA+L++S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
V PALR VGNIVTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAG 371
Query: 360 NRDQIQVMI 368
N +QIQ +I
Sbjct: 372 NTEQIQAVI 380
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
++LP + ++S D+ ++A LS I+ VI + R VE L E
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TL 314
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV-AGDSP 192
+Q A A+ NI +G T+VVI+ G +P LL+SP ++++++A W + N+ AG++
Sbjct: 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+ + ++ LIP L +L E A+ + A W +SN G Q P
Sbjct: 375 QIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 418
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
VI +GV+P L+ ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 337 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPL 207
+++A WA+ N + + D++ +SQG + PL
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 433
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 186/375 (49%), Positives = 242/375 (64%), Gaps = 8/375 (2%)
Query: 1 MSLRPNAR-AEVRRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQF 58
MS NA R NR+K D+ E RRRR + VE+RK K++E +LK+R
Sbjct: 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDA 60
Query: 59 XXXXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV 118
+ N T S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G+
Sbjct: 61 TSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 120
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
+P+FV FL + D +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + E
Sbjct: 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 180
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK 234
QAVWALGN+AG RDLV+ GA+ PLLA L LRN TWTLSN CR K
Sbjct: 181 QAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240
Query: 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
P PP D V LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+
Sbjct: 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300
Query: 294 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353
LLG ++ PALR +GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+
Sbjct: 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTM 359
Query: 354 SNITAGNRDQIQVMI 368
SNITAG +DQIQ ++
Sbjct: 360 SNITAGRQDQIQQVV 374
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q AAWA+TN S
Sbjct: 349 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKAAAWAITNYTS 406
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 407 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 335 bits (859), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/297 (60%), Positives = 215/297 (72%), Gaps = 5/297 (1%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
LQ EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
L++S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
NIVTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 294
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
++LP + ++S D+ ++A LS I+ VI + R VE L E
Sbjct: 171 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TL 228
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV-AGDSP 192
+Q A A+ NI +G T+VVI+ G +P LL+SP ++++++A W + N+ AG++
Sbjct: 229 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 288
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+ + ++ LIP L +L E A+ + A W +SN G Q P
Sbjct: 289 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP 332
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
VI +GV+P L+ ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 251 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPL 207
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 293
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
++LP + ++S D+ ++A LS I+ VI + R VE L E
Sbjct: 170 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHEST-L 227
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV-AGDSP 192
+Q A A+ NI +G T+VVI+ G +P LL+SP ++++++A W + N+ AG++
Sbjct: 228 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 287
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+ + ++ LIP L +L E A+ + A W +SN G Q P
Sbjct: 288 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP 331
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
VI +GV+P L+ ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 250 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPL 207
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/297 (60%), Positives = 215/297 (72%), Gaps = 5/297 (1%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
LQ EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
L++S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
NIVTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 294
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
++LP + ++S D+ ++A LS I+ VI + R VE L E
Sbjct: 171 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TL 228
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV-AGDSP 192
+Q A A+ NI +G T+VVI+ G +P LL+SP ++++++A W + N+ AG++
Sbjct: 229 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 288
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+ + ++ LIP L +L E A+ + A W +SN G Q P
Sbjct: 289 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP 332
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
VI +GV+P L+ ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 251 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPL 207
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 293
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
++LP + ++S D+ ++A LS I+ VI + R VE L E
Sbjct: 170 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TL 227
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV-AGDSP 192
+Q A A+ NI +G T+VVI+ G +P LL+SP ++++++A W + N+ AG++
Sbjct: 228 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 287
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+ + ++ LIP L +L E A+ + A W +SN G Q P
Sbjct: 288 QIQAVI--DANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRP 331
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
VI +GV+P L+ ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 250 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPL 207
D +++A WA+ N + + D++ +SQG + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 292
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
++LP + ++S D+ ++A LS I+ VI + R VE L E
Sbjct: 169 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TL 226
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV-AGDSP 192
+Q A A+ NI +G T+VVI+ G +P LL+SP ++++++A W + N+ AG++
Sbjct: 227 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 286
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+ + ++ LIP L +L E A+ + A W +SN G Q P
Sbjct: 287 QIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 330
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
VI +GV+P L+ ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 249 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPL 207
+++A WA+ N + + D++ +SQG + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
Q EAAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
RD VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
VTG+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 292
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
++LP + ++S D+ ++A LS I+ VI + R VE L E
Sbjct: 169 QALPTLAKLIYSMDTETLVDACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TL 226
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV-AGDSP 192
+Q A A+ NI +G T+VVI+ G +P LL+SP ++++++A W + N+ AG++
Sbjct: 227 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 286
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+ + ++ LIP L +L E A+ + A W +SN G Q P
Sbjct: 287 QIQAVI--DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 330
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
VI +GV+P L+ ++ EA W ++NI +G +E + VID +P VKLL
Sbjct: 249 VINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPL 207
+++A WA+ N + + D++ +SQG + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 330 bits (847), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 178/292 (60%), Positives = 212/292 (72%), Gaps = 3/292 (1%)
Query: 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
+AW LTNIASG S T++VI GAVPIF++LL+S +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
VL L PLL +++ +L+M RNA W LSN CRGK PP F +V P L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
DD QTQ I+ + L L S K+SIKKEACWTISNITAGNR QIQ +I
Sbjct: 265 DDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 330 bits (846), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 180/292 (61%), Positives = 213/292 (72%), Gaps = 3/292 (1%)
Query: 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
+AW LTNIASG S T++VI GAVPIF++LL+S +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
VL L PLL +++ +L+M RNA W LSN CRGK PP F +V P L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
DD QTQ I+ AL L L S K+SIKKEACWTISNITAGNR QIQ +I
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 312
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 355
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 330 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 387
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 318 bits (814), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 355
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 330 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 387
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 318 bits (814), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 341
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 316 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 373
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 374 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 414
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 318 bits (814), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 355
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 330 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 387
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 388 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 318 bits (814), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 331
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 306 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 363
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 364 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 404
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 317 bits (813), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 339
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 314 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 371
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 372 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 412
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 317 bits (813), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 311
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 286 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 343
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 344 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 317 bits (813), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 304
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 279 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 336
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 337 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 377
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 317 bits (813), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 305
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 280 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 337
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 317 bits (813), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 305
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 280 TNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 337
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 317 bits (812), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 300
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 275 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 332
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 333 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 373
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 317 bits (812), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 305
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 280 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 337
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 338 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 317 bits (812), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 304
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 279 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 336
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 337 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 377
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 317 bits (812), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 300
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EAAWA+TN S
Sbjct: 275 TNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTS 332
Query: 148 -GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
GT E ++ G + + LL++ + + + A+ N+
Sbjct: 333 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 373
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 162/299 (54%), Positives = 206/299 (68%), Gaps = 6/299 (2%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
S+ +V G+ S + QL+AT RKLLS E+ PPI+ +I++G++P+FV FL R D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
RDLV+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
+L+H +D EVL D CWA+SYL+DG N++I V++ GV P+LV+LLG ++ PALR
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+GNIVTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 306
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
+++Q EAT + + R I++V+ G+VP V L + D+ + Q EA WA+TN S
Sbjct: 281 TNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVSVLSKADF-KTQKEAVWAVTNYTS 338
Query: 148 -GTSENTKVVIDHGAVPIFVKLLAS 171
GT E ++ G + + LL +
Sbjct: 339 GGTVEQIVYLVHCGIIEPLMNLLTA 363
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 8/230 (3%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
LP M + SDD QL AT +F ++LS + + I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KPQPPFDQVRPALPALAQL 252
V+ GAL P L QL +L+ A W LSN G + Q D ALPAL QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
+ S +E++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 134/234 (57%), Gaps = 8/234 (3%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
+P+ + L +D Q Q A + I S +E + VID GA+P V+LL+SP++ + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KP 235
+A+WAL N+A V+ GAL P L QL +L+ A W LSN G +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
Q D ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL
Sbjct: 132 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349
P+ +L AL + NI +G + Q Q + GAL L L +H ++K I+KEA
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 9/200 (4%)
Query: 173 SDDVREQ--AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
SDD++EQ A + D V+ GAL P L QL +L+ A W LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 231 CRG---KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287
G + Q D ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG
Sbjct: 82 ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
P LV+LL P+ +L AL + NI +G + Q Q +I GALP L+ LL+ S + I +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 198
Query: 348 EACWTISNITAGNRDQIQVM 367
EA W +SNI +G +Q Q +
Sbjct: 199 EALWALSNIASGGNEQKQAV 218
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 365 QVMI 368
Q +I
Sbjct: 174 QAVI 177
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 246 LPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
LP + Q ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 365 QVMI 368
Q +I
Sbjct: 132 QAVI 135
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
+LPA+V + S + + EA + S + I+ VI +G +P V+ L + L
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL 184
Q EA WAL+NIASG +E + V + GA+ +L + ++ ++++A AL
Sbjct: 198 Q-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
+P+ V+ L D +LQ A L+ IASG +E + VID GA+P V+LL+SP++
Sbjct: 14 LPQMVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--- 69
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KP 235
+L+ A W LSN G +
Sbjct: 70 ----------------------------------------ILQEALWALSNIASGGNEQI 89
Query: 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
Q D ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL
Sbjct: 90 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349
P+ +L AL + NI +G + Q Q + GAL L L +H ++K I+KEA
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 200
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QVM 367
Q +
Sbjct: 174 QAV 176
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQ 133
LP MV + S D Q E + RKL I + I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
LQ EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQL 252
V+ GAL P L QL +L+ A W LSN G Q + AL L QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 253 VHSNDEEVLTDACWALSYL 271
+E++ +A AL L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
LP + Q ++S D++ L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 366 VMI 368
+I
Sbjct: 133 AVI 135
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 54/245 (22%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
+P+ V+ L D +LQ A L+ IASG +E + VID GA+P V+LL+SP++
Sbjct: 14 LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--- 69
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+L+ A W LSN G
Sbjct: 70 ----------------------------------------ILQEALWALSNIASGG---- 85
Query: 239 FDQVRP-----ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
+Q++ ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 294 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353
LL P+ +L AL + NI +G + Q Q + GA P L L + ++K I+KEA +
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEK-IQKEAQEAL 204
Query: 354 SNITA 358
I +
Sbjct: 205 EKIQS 209
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QVM 367
Q +
Sbjct: 174 QAV 176
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQ 133
LP MV + S D Q E + RKL I + I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
LQ EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQL 252
V+ GAL P L QL +L+ A W LSN G Q + A PAL QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 253 VHSNDEEVLTDACWALSYL 271
S +E++ +A AL +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
LP + Q ++S D++ L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 366 VMI 368
+I
Sbjct: 133 AVI 135
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
LP M + SDD QL AT +F ++LS + + I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
EA WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQLVH 254
V+ GAL P L QL +L+ A W LSN G Q + AL L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 255 SNDEEVLTDACWALSYL 271
+E++ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QVM 367
Q +
Sbjct: 174 QAV 176
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 173 SDDVREQ--AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
SDD++EQ A + D V+ GAL P L QL +L+ A W LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 231 CRG---KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287
G + Q D ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG
Sbjct: 82 ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
P LV+LL P+ +L AL + NI +G + Q Q + GAL L L +H ++K I+K
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQK 198
Query: 348 EA 349
EA
Sbjct: 199 EA 200
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 246 LPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
LP + Q ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 365 QVMI 368
Q +I
Sbjct: 132 QAVI 135
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 6/244 (2%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
V + V+ L D + Q EAA L IASG + K ++D G V + VKLL S +V++
Sbjct: 4 VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
+A AL N+A ++ G + +L +L + + A L+N G P
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEA 120
Query: 239 FDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296
+ A + L +L+ S D EV +A AL+ ++ G ++ I+A+++AG LV+LL
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 297 HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
V A R + NI +G + I+ G + L LLT + + ++KEA + NI
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE-VQKEAQRALENI 239
Query: 357 TAGN 360
+G
Sbjct: 240 KSGG 243
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 221 RNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 278
+ A L+ G P + A + L +L+ S D EV +A AL+ ++ G ++
Sbjct: 20 KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 279 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338
I+A+++AG LV+LL V A R + NI +G D + I+ G + L+ LLT
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 339 HSHKKSIKKEACWTISNITAGNRDQIQVMI 368
+ + ++KEA ++NI +G + I+ ++
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIV 167
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 206 PLLAQLNERAKLSML----RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 261
P+L R +SML R T NF + F V P LP + L+H DE V
Sbjct: 139 PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198
Query: 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
A AL +L+ NDK++ V V RL EL
Sbjct: 199 ASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 30/161 (18%)
Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
P+ VE Q Q A TN+ T+ V+ D +P+ + LL P+ DVR
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML-----RNATWTLSNFCRG- 233
A +A+ D+ RD + L NE ++ + R LS C
Sbjct: 179 AAFAININKYDNSDIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232
Query: 234 KPQPPFDQVRPA---------LPAL-AQLVHSNDEEVLTDA 264
K +D + A LP L L +D E++T A
Sbjct: 233 KKNTVYDDIIEAAGELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 295
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 156
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 25/248 (10%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 179 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 237
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 231
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 238 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 293
Query: 232 RGKPQPPFDQVRPALPALAQLV-HSNDEEVLTD-ACWALSYLSDGTNDKIQAV----IEA 285
+ AL + V + D E +T+ A AL +L+ + A +
Sbjct: 294 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 353
Query: 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY------GALPYLLGLLTH 339
G+ P +V+LL PS LI A TVG I C + GA+P L+ LL
Sbjct: 354 GL-PVVVKLLHPPSHWPLIKA--TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVR 406
Query: 340 SHKKSIKK 347
+H+ + ++
Sbjct: 407 AHQDTQRR 414
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 82 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 140
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 141 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 199
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 200 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 258
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 259 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 298
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 159
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 259
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 260 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 299
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 160
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 259
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 260 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 299
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 160
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 85 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 143
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 144 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 202
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 203 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 261
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 262 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 301
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 162
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 84 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 142
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 143 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 201
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 202 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 260
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 261 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 300
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 161
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 295
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 156
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 70 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 128
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 129 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 187
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 188 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 246
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 247 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 286
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 147
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 68 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 126
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 127 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 185
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 186 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 244
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 245 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 284
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 145
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 282
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 143
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 282
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 143
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 78 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 137 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 255 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 294
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 155
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 9/224 (4%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 81 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 256
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 140 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
Q G L LLG S ++ A +SN+T N
Sbjct: 258 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNN 297
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 158
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 154
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 77 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 135
Query: 199 LSQGALIPLLAQLNE 213
G L ++A LN+
Sbjct: 136 RLAGGLQKMVALLNK 150
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L ++ LL ++ K
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 154
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 77 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 135
Query: 199 LSQGALIPLLAQLNE 213
G L ++A LN+
Sbjct: 136 RLAGGLQKMVALLNK 150
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
+ND E L LS + + A+ ++G P LV +LG P SVL A+ T+ N++
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKK 343
+ + G L ++ LL ++ K
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVK 291
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQF----------EAAWALTNIASGTSENTK 154
+ G +PR V+ L+R Q QF EA +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 25/248 (10%)
Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 231
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 428
Query: 232 RGKPQPPFDQVRPALPALAQLV-HSNDEEVLTD-ACWALSYLSDGTNDKIQAV----IEA 285
+ AL + V + D E +T+ A AL +L+ D A +
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488
Query: 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY------GALPYLLGLLTH 339
G+ P +V+LL PS LI A TVG I C + GA+P L+ LL
Sbjct: 489 GL-PVVVKLLHPPSHWPLIKA--TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVR 541
Query: 340 SHKKSIKK 347
+H+ + ++
Sbjct: 542 AHQDTQRR 549
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
N +V T C A LS+ +G + A+ ++G P LV+ LG P SVL A+ T+
Sbjct: 12 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKXLGSPVDSVLFYAITTL 67
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343
N++ + + G L + LL ++ K
Sbjct: 68 HNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVK 100
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 115 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 154
+ G +PR V+ L+R Q QF I G + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 19/203 (9%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 160
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 161 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 218
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 219 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 277
Query: 342 KKSIKKEACWTISNITAGN-RDQ 363
+I AC T+ N++A N +DQ
Sbjct: 278 SLTIVSNACGTLWNLSARNPKDQ 300
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 19/203 (9%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 274
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 332
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 391
Query: 342 KKSIKKEACWTISNITAGN-RDQ 363
+I AC T+ N++A N +DQ
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQ 414
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 455
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P + L + + +++ V AC A
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF----------- 504
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 505 -ATLEEEACTELVPYLAY 521
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 31.2 bits (69), Expect = 0.99, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 12 RRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKR 49
R +R+K D+ E RRRR + VE+RK K+++ +LK+R
Sbjct: 3 RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRR 41
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 219 MLRNATWTLSNF 230
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 430
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P + L + + +++ V AC A
Sbjct: 431 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF----------- 479
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 480 -ATLEEEACTELVPYLAY 496
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 19/203 (9%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 342 KKSIKKEACWTISNITAGN-RDQ 363
+I AC T+ N++A N +DQ
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQ 298
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 417
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P + L + + +++ V AC A
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF----------- 466
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 467 -ATLEEEACTELVPYLAY 483
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 340
Query: 219 MLRNATWTLSNFCRGKPQP---PFDQVRPALPALA 250
+ N W S+ + DQ PA L+
Sbjct: 341 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS 375
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 219 MLRNATWTLSNFCRGKPQP---PFDQVRPALPALA 250
+ N W S+ + DQ PA L+
Sbjct: 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS 500
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 218
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 219 MLRNATWTLSNF 230
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170
E+ I V+P E + D+ + + A A +I G N + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDW-RYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMK 418
Query: 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATWTLS 228
PS VR+ W +G + P + ++ L PLL L E A+ + N W S
Sbjct: 419 DPSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 229 NFCRGKPQP---PFDQVRPALPALA 250
+ + DQ PA L+
Sbjct: 476 SLAEAAYEAADVADDQEEPATYCLS 500
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 179 QAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSN----FCRG 233
W +G +A D G + L L + K++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487
Query: 234 KPQPPFDQVRPAL 246
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 179 QAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSN----FCRG 233
W +G +A D G + L L + K++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEA 487
Query: 234 KPQPPFDQVRPAL 246
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 19/203 (9%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 342 KKSIKKEACWTISNITAGN-RDQ 363
+I AC T+ N++A N +DQ
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQ 298
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 33/179 (18%)
Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVV-IDHGAVPIFVKLLASPSDDVREQAVWAL 184
++ D L++ A+ + +GT N+ V + H AV + +DDVR AV AL
Sbjct: 539 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIAL 591
Query: 185 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT-WTLSNFCRGK--------- 234
G V +L +P + QL ++ + +R T + L C GK
Sbjct: 592 GFV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 641
Query: 235 ---PQPPFDQVR-PALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQAVIEAGVC 288
+ P D VR A+ AL+ ++ E++ A ++LS TN + + + G C
Sbjct: 642 DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGAC 700
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 109 PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA---------LTNIASGTS--------- 150
P++E + V+PR V+ L++ + AA + I G +
Sbjct: 394 PLQE---AAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARD 450
Query: 151 -ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA 209
N + +P+FV+LL S ++++ A L +A D D + ++GA PL+
Sbjct: 451 PMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDAEGASAPLME 509
Query: 210 QLNER 214
L+ R
Sbjct: 510 LLHSR 514
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
+P+ +LL V+E + LG +A + L + LIP L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPE--LIPHLIQCLSDKK-ALVR 455
Query: 222 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
+ T WTLS + QPP ++P L + + +++ V AC A
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAF----------- 504
Query: 280 QAVIEAGVCPRLVELLGH 297
A +E C LV L +
Sbjct: 505 -ATLEEEACTELVPYLAY 521
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT 224
V L A SD R +W+LG++ G PR R+ V L+ +LA +S++ N
Sbjct: 16 LVALEAVLSDAGRVDDIWSLGDIVGYGPRPRECV----ELVRVLA-----PNISVIGNHD 66
Query: 225 WTLSNFCRGK 234
W C G+
Sbjct: 67 WA----CIGR 72
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 127 MREDYPQLQFEAAWALTNIASGTSENTKVV-IDHGAVPIFVKLLASPSDDVREQAVWALG 185
+ D L++ A+ + +GT N+ V + H AV + +DDVR AV ALG
Sbjct: 551 LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIALG 603
Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT-WTLSNFCRGKP-QPPFDQVR 243
V +L +P + QL ++ + +R T + L C GK Q D +
Sbjct: 604 FV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653
Query: 244 P 244
P
Sbjct: 654 P 654
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 213
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIE 458
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 19/203 (9%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
+R A AL N+ GD L +G L+AQL ++ S+LRN +W +
Sbjct: 109 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWR-A 167
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
+ K V+ ++ + + + A W LS + T +K G
Sbjct: 168 DVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 225
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 226 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 284
Query: 342 KKSIKKEACWTISNITAGN-RDQ 363
+I AC T+ N++A N +DQ
Sbjct: 285 SLTIVSNACGTLWNLSARNPKDQ 307
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 154 KVVIDHGAVPIFVKLLASPSDDVREQA 180
+ +I G P V L D+++E+A
Sbjct: 128 RKIISRGFTPRAVGRL---HDELQERA 151
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 154 KVVIDHGAVPIFVKLLASPSDDVREQA 180
+ +I G P V L D+++E+A
Sbjct: 135 RKIISRGFTPRAVGRL---HDELQERA 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,976,953
Number of Sequences: 62578
Number of extensions: 379175
Number of successful extensions: 1831
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 240
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)