Query 017651
Match_columns 368
No_of_seqs 303 out of 2012
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 2.8E-71 6E-76 464.0 24.2 356 7-368 5-366 (526)
2 KOG0166 Karyopherin (importin) 100.0 1.5E-67 3.2E-72 474.0 33.1 355 9-368 5-361 (514)
3 KOG0166 Karyopherin (importin) 100.0 3.9E-44 8.5E-49 322.8 24.3 289 74-368 109-404 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 3.2E-43 6.8E-48 295.4 14.5 289 74-367 114-410 (526)
5 PLN03200 cellulose synthase-in 100.0 4.9E-33 1.1E-37 285.3 29.8 289 74-366 189-524 (2102)
6 PLN03200 cellulose synthase-in 100.0 4.3E-31 9.3E-36 271.1 29.8 283 74-367 404-690 (2102)
7 KOG4224 Armadillo repeat prote 99.9 1.2E-25 2.6E-30 191.3 21.3 279 73-359 166-447 (550)
8 KOG4224 Armadillo repeat prote 99.9 1.5E-24 3.2E-29 184.7 19.0 277 74-358 208-493 (550)
9 PF05804 KAP: Kinesin-associat 99.8 2.1E-18 4.5E-23 165.0 25.9 278 74-359 290-608 (708)
10 PF05804 KAP: Kinesin-associat 99.8 2.6E-17 5.7E-22 157.5 25.8 269 76-359 252-521 (708)
11 KOG0168 Putative ubiquitin fus 99.8 4.4E-17 9.5E-22 152.4 21.6 262 75-340 168-438 (1051)
12 KOG1048 Neural adherens juncti 99.7 9.1E-15 2E-19 137.4 25.3 278 75-357 234-683 (717)
13 PF04826 Arm_2: Armadillo-like 99.7 5.1E-15 1.1E-19 126.2 20.5 196 113-315 8-205 (254)
14 KOG4199 Uncharacterized conser 99.7 2.2E-14 4.7E-19 121.8 23.3 281 74-358 145-444 (461)
15 KOG2122 Beta-catenin-binding p 99.7 3.5E-15 7.6E-20 146.4 17.5 265 93-360 317-603 (2195)
16 KOG4199 Uncharacterized conser 99.7 4.7E-14 1E-18 119.8 21.5 274 85-364 118-409 (461)
17 PF10508 Proteasom_PSMB: Prote 99.6 1.8E-13 3.9E-18 129.6 26.7 277 75-358 78-366 (503)
18 PF10508 Proteasom_PSMB: Prote 99.6 1.3E-13 2.9E-18 130.5 25.7 272 78-359 42-320 (503)
19 cd00020 ARM Armadillo/beta-cat 99.6 9.2E-15 2E-19 111.8 14.0 119 112-232 2-120 (120)
20 PRK09687 putative lyase; Provi 99.6 9.3E-14 2E-18 121.2 21.3 225 75-357 24-249 (280)
21 PF04826 Arm_2: Armadillo-like 99.6 2.3E-13 5E-18 116.1 17.2 196 156-359 8-206 (254)
22 cd00020 ARM Armadillo/beta-cat 99.6 9.3E-14 2E-18 106.2 13.1 115 243-358 6-120 (120)
23 PRK09687 putative lyase; Provi 99.5 3E-13 6.6E-18 117.9 17.1 204 118-366 24-227 (280)
24 KOG1048 Neural adherens juncti 99.5 3E-13 6.4E-18 127.3 17.8 239 118-359 234-596 (717)
25 PF01749 IBB: Importin beta bi 99.5 4E-15 8.7E-20 107.3 2.6 90 7-96 4-96 (97)
26 KOG4500 Rho/Rac GTPase guanine 99.5 1.2E-12 2.6E-17 114.9 18.2 270 86-358 54-390 (604)
27 cd00256 VATPase_H VATPase_H, r 99.5 1.5E-11 3.2E-16 111.8 22.6 282 75-360 102-427 (429)
28 PRK13800 putative oxidoreducta 99.4 6.1E-11 1.3E-15 120.3 25.8 235 75-364 622-872 (897)
29 KOG2122 Beta-catenin-binding p 99.4 2.6E-11 5.7E-16 119.9 18.0 293 71-367 232-568 (2195)
30 KOG2023 Nuclear transport rece 99.4 5.8E-12 1.3E-16 115.9 12.2 264 74-358 128-463 (885)
31 KOG2160 Armadillo/beta-catenin 99.4 1.7E-10 3.6E-15 100.2 20.1 187 84-273 93-282 (342)
32 KOG2171 Karyopherin (importin) 99.3 3.1E-10 6.7E-15 111.1 22.9 280 75-361 119-464 (1075)
33 KOG2160 Armadillo/beta-catenin 99.3 1.3E-10 2.9E-15 100.8 17.4 184 132-316 97-283 (342)
34 KOG4500 Rho/Rac GTPase guanine 99.3 4E-10 8.7E-15 99.2 20.2 281 74-359 87-432 (604)
35 KOG2759 Vacuolar H+-ATPase V1 99.3 4.8E-10 1E-14 98.7 20.6 281 76-360 116-440 (442)
36 KOG1222 Kinesin associated pro 99.3 1.4E-09 3.1E-14 97.1 23.8 278 75-362 305-667 (791)
37 PRK13800 putative oxidoreducta 99.3 6.8E-10 1.5E-14 112.7 22.3 229 74-355 652-896 (897)
38 KOG1517 Guanine nucleotide bin 99.2 1.1E-09 2.5E-14 105.7 18.9 267 89-366 451-740 (1387)
39 KOG1293 Proteins containing ar 99.2 1.5E-09 3.2E-14 100.5 18.1 279 86-367 193-542 (678)
40 PF01602 Adaptin_N: Adaptin N 99.2 5.3E-10 1.2E-14 108.0 15.7 254 75-358 43-296 (526)
41 PF01602 Adaptin_N: Adaptin N 99.2 8.6E-10 1.9E-14 106.5 15.8 250 75-358 80-333 (526)
42 KOG1293 Proteins containing ar 99.2 9.5E-09 2.1E-13 95.2 21.1 113 79-192 14-128 (678)
43 KOG1241 Karyopherin (importin) 99.2 1.4E-09 3E-14 102.0 15.8 278 76-359 174-478 (859)
44 PF03224 V-ATPase_H_N: V-ATPas 99.1 2.3E-09 5E-14 95.9 15.9 223 76-303 60-302 (312)
45 KOG0946 ER-Golgi vesicle-tethe 99.1 5.8E-08 1.3E-12 91.7 25.3 284 74-363 22-351 (970)
46 PTZ00429 beta-adaptin; Provisi 99.1 7.5E-08 1.6E-12 94.3 27.0 262 75-363 69-331 (746)
47 PTZ00429 beta-adaptin; Provisi 99.1 1E-07 2.2E-12 93.5 27.7 254 75-359 33-286 (746)
48 KOG0168 Putative ubiquitin fus 99.1 1E-08 2.2E-13 97.4 18.1 242 119-364 169-419 (1051)
49 KOG2171 Karyopherin (importin) 99.1 3.7E-08 8E-13 96.9 22.5 277 77-364 82-424 (1075)
50 cd00256 VATPase_H VATPase_H, r 99.1 2.3E-08 5E-13 91.2 19.5 234 78-315 147-425 (429)
51 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.6E-09 1.2E-13 93.4 14.9 232 118-351 56-307 (312)
52 KOG1222 Kinesin associated pro 99.0 3.2E-08 7E-13 88.7 18.4 268 76-358 262-534 (791)
53 KOG2023 Nuclear transport rece 99.0 1.4E-08 2.9E-13 94.2 15.2 156 117-275 128-287 (885)
54 KOG1517 Guanine nucleotide bin 99.0 3.5E-08 7.5E-13 95.8 17.8 253 74-330 472-747 (1387)
55 KOG2759 Vacuolar H+-ATPase V1 98.9 1.9E-07 4.1E-12 82.7 18.4 236 77-316 159-439 (442)
56 KOG0946 ER-Golgi vesicle-tethe 98.9 1.7E-06 3.7E-11 82.1 25.1 286 74-360 61-401 (970)
57 KOG1241 Karyopherin (importin) 98.9 1.2E-07 2.6E-12 89.3 16.5 281 76-363 131-440 (859)
58 KOG3678 SARM protein (with ste 98.9 1.3E-07 2.7E-12 84.7 15.8 265 74-356 180-450 (832)
59 COG5215 KAP95 Karyopherin (imp 98.7 1.9E-06 4.1E-11 79.1 18.2 274 77-361 136-440 (858)
60 KOG2973 Uncharacterized conser 98.7 1E-05 2.3E-10 69.0 21.0 269 76-357 5-313 (353)
61 KOG1059 Vesicle coat complex A 98.7 7E-06 1.5E-10 77.4 20.9 219 76-317 146-367 (877)
62 PF14664 RICTOR_N: Rapamycin-i 98.7 1.2E-05 2.5E-10 73.1 22.2 274 76-357 27-363 (371)
63 PF00514 Arm: Armadillo/beta-c 98.6 7.8E-08 1.7E-12 57.7 4.8 41 317-358 1-41 (41)
64 KOG3678 SARM protein (with ste 98.6 1.8E-06 4E-11 77.4 14.0 187 110-301 173-363 (832)
65 PF10165 Ric8: Guanine nucleot 98.5 2.7E-05 5.8E-10 72.9 21.8 257 107-364 12-343 (446)
66 COG5215 KAP95 Karyopherin (imp 98.5 2.9E-06 6.2E-11 78.0 14.5 267 87-362 191-483 (858)
67 TIGR02270 conserved hypothetic 98.5 4.9E-05 1.1E-09 70.0 22.7 219 75-358 55-296 (410)
68 PF00514 Arm: Armadillo/beta-c 98.5 1.3E-07 2.8E-12 56.8 3.7 41 149-189 1-41 (41)
69 KOG1059 Vesicle coat complex A 98.5 1.2E-05 2.6E-10 75.9 18.2 218 118-358 145-365 (877)
70 COG1413 FOG: HEAT repeat [Ener 98.5 1.8E-05 3.9E-10 71.9 19.3 230 75-359 44-305 (335)
71 TIGR02270 conserved hypothetic 98.5 5.1E-05 1.1E-09 69.8 21.5 191 118-358 55-267 (410)
72 KOG4646 Uncharacterized conser 98.5 1.7E-06 3.8E-11 64.5 9.3 115 117-234 16-130 (173)
73 KOG1062 Vesicle coat complex A 98.5 4.8E-05 1E-09 72.8 20.8 224 119-358 109-379 (866)
74 KOG4413 26S proteasome regulat 98.4 0.00022 4.8E-09 61.6 22.5 285 76-364 84-386 (524)
75 KOG1242 Protein containing ada 98.4 7.1E-05 1.5E-09 69.9 20.7 236 117-367 96-334 (569)
76 COG5181 HSH155 U2 snRNP splice 98.4 7.6E-06 1.6E-10 75.9 14.2 265 76-360 606-872 (975)
77 COG5369 Uncharacterized conser 98.4 5.1E-06 1.1E-10 75.8 12.9 243 112-357 426-740 (743)
78 PF05536 Neurochondrin: Neuroc 98.4 2.1E-05 4.6E-10 75.2 17.9 236 74-315 5-261 (543)
79 KOG0213 Splicing factor 3b, su 98.4 9.2E-06 2E-10 76.9 14.8 262 76-359 801-1066(1172)
80 COG5231 VMA13 Vacuolar H+-ATPa 98.4 2.6E-05 5.7E-10 66.9 16.1 224 132-358 163-428 (432)
81 COG1413 FOG: HEAT repeat [Ener 98.4 2.3E-05 5E-10 71.2 16.3 188 117-358 43-242 (335)
82 KOG4646 Uncharacterized conser 98.4 1.7E-06 3.6E-11 64.6 7.0 132 162-295 18-150 (173)
83 PF12348 CLASP_N: CLASP N term 98.3 7.8E-06 1.7E-10 69.9 12.1 189 84-280 17-213 (228)
84 KOG1240 Protein kinase contain 98.3 2.3E-05 5E-10 78.0 16.0 267 76-358 424-725 (1431)
85 COG5369 Uncharacterized conser 98.3 6E-06 1.3E-10 75.4 11.1 180 179-360 408-596 (743)
86 KOG1062 Vesicle coat complex A 98.3 0.00012 2.7E-09 70.1 19.4 29 20-48 21-51 (866)
87 PF13646 HEAT_2: HEAT repeats; 98.3 3.6E-06 7.7E-11 60.1 7.4 87 119-228 1-88 (88)
88 KOG1824 TATA-binding protein-i 98.3 6.1E-05 1.3E-09 73.3 17.1 275 78-365 9-293 (1233)
89 PF13513 HEAT_EZ: HEAT-like re 98.3 1.2E-06 2.6E-11 56.4 4.0 55 300-356 1-55 (55)
90 PF13646 HEAT_2: HEAT repeats; 98.2 2.5E-06 5.3E-11 61.0 5.6 87 246-354 1-88 (88)
91 KOG1077 Vesicle coat complex A 98.2 0.00045 9.7E-09 65.5 21.2 270 76-365 113-406 (938)
92 KOG0213 Splicing factor 3b, su 98.2 4.1E-05 8.9E-10 72.7 13.7 262 79-363 846-1147(1172)
93 KOG1061 Vesicle coat complex A 98.2 2.4E-05 5.2E-10 74.7 12.4 71 76-151 123-193 (734)
94 PF05536 Neurochondrin: Neuroc 98.2 0.00014 3.1E-09 69.6 17.5 234 119-358 7-261 (543)
95 KOG1242 Protein containing ada 98.2 0.00037 7.9E-09 65.3 19.2 266 74-358 216-483 (569)
96 KOG2259 Uncharacterized conser 98.2 4.3E-05 9.4E-10 71.6 13.0 263 79-367 203-520 (823)
97 KOG2734 Uncharacterized conser 98.1 0.00095 2.1E-08 60.0 20.5 229 107-338 115-371 (536)
98 PF12348 CLASP_N: CLASP N term 98.1 1.6E-05 3.4E-10 68.0 9.2 186 170-363 17-211 (228)
99 KOG1824 TATA-binding protein-i 98.1 0.00012 2.6E-09 71.3 15.7 210 132-365 833-1043(1233)
100 KOG0212 Uncharacterized conser 98.1 0.0004 8.7E-09 64.2 18.2 233 76-318 165-409 (675)
101 KOG1061 Vesicle coat complex A 98.1 8.8E-05 1.9E-09 70.9 14.3 188 118-316 122-309 (734)
102 KOG1789 Endocytosis protein RM 98.1 0.0016 3.6E-08 64.5 22.7 140 90-234 1741-1885(2235)
103 PF13513 HEAT_EZ: HEAT-like re 98.1 4.6E-06 1E-10 53.6 3.9 55 132-187 1-55 (55)
104 KOG2734 Uncharacterized conser 98.0 0.0029 6.2E-08 57.1 21.3 242 73-315 124-400 (536)
105 KOG4413 26S proteasome regulat 98.0 0.0024 5.2E-08 55.5 19.9 283 75-363 129-444 (524)
106 KOG0212 Uncharacterized conser 98.0 0.00071 1.5E-08 62.6 17.4 269 76-362 210-484 (675)
107 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00023 5E-09 61.2 13.3 228 85-315 160-428 (432)
108 KOG1789 Endocytosis protein RM 98.0 0.0022 4.9E-08 63.6 21.2 260 74-340 1771-2142(2235)
109 KOG1240 Protein kinase contain 98.0 0.00062 1.3E-08 68.3 17.3 233 75-315 463-725 (1431)
110 KOG1060 Vesicle coat complex A 97.9 0.0037 8.1E-08 60.2 21.0 139 124-274 150-317 (968)
111 KOG2973 Uncharacterized conser 97.9 0.00066 1.4E-08 58.3 14.5 228 119-358 5-273 (353)
112 COG5181 HSH155 U2 snRNP splice 97.9 0.00015 3.2E-09 67.6 11.2 259 81-358 653-946 (975)
113 smart00185 ARM Armadillo/beta- 97.9 3.6E-05 7.7E-10 46.0 5.0 39 319-358 3-41 (41)
114 smart00185 ARM Armadillo/beta- 97.9 3.1E-05 6.6E-10 46.3 4.7 40 150-189 2-41 (41)
115 PF09759 Atx10homo_assoc: Spin 97.9 7.2E-05 1.6E-09 54.0 7.3 67 134-200 2-70 (102)
116 PF10165 Ric8: Guanine nucleot 97.9 0.0026 5.6E-08 59.8 19.6 233 84-318 42-340 (446)
117 KOG0567 HEAT repeat-containing 97.8 0.0026 5.7E-08 53.5 16.7 203 116-365 66-287 (289)
118 PF09759 Atx10homo_assoc: Spin 97.8 0.00012 2.6E-09 52.9 7.8 64 302-365 2-66 (102)
119 COG5096 Vesicle coat complex, 97.8 0.0064 1.4E-07 59.6 20.8 103 76-190 94-196 (757)
120 PF08569 Mo25: Mo25-like; Int 97.8 0.022 4.8E-07 51.1 22.8 242 111-357 70-331 (335)
121 KOG2259 Uncharacterized conser 97.8 0.00073 1.6E-08 63.7 13.7 229 76-322 236-518 (823)
122 PF08569 Mo25: Mo25-like; Int 97.7 0.00064 1.4E-08 60.8 11.7 211 155-367 71-294 (335)
123 COG5096 Vesicle coat complex, 97.7 0.02 4.4E-07 56.2 22.3 138 119-272 57-194 (757)
124 KOG1248 Uncharacterized conser 97.7 0.0073 1.6E-07 60.9 19.5 239 122-365 658-906 (1176)
125 PF05004 IFRD: Interferon-rela 97.6 0.0077 1.7E-07 53.7 17.0 193 75-274 44-258 (309)
126 KOG2062 26S proteasome regulat 97.5 0.0021 4.5E-08 61.5 13.3 212 117-358 413-653 (929)
127 KOG1077 Vesicle coat complex A 97.5 0.035 7.7E-07 53.2 20.2 258 79-357 151-432 (938)
128 KOG2274 Predicted importin 9 [ 97.4 0.01 2.2E-07 58.2 16.9 234 124-365 456-696 (1005)
129 KOG1991 Nuclear transport rece 97.4 0.022 4.8E-07 56.6 18.7 266 88-361 432-715 (1010)
130 COG5240 SEC21 Vesicle coat com 97.4 0.0049 1.1E-07 57.5 13.5 62 85-151 275-336 (898)
131 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.00059 1.3E-08 49.3 6.2 92 220-313 3-94 (97)
132 PF11841 DUF3361: Domain of un 97.4 0.012 2.7E-07 46.1 13.5 125 194-318 3-134 (160)
133 KOG1943 Beta-tubulin folding c 97.4 0.12 2.6E-06 52.1 23.1 194 75-276 342-576 (1133)
134 KOG1060 Vesicle coat complex A 97.3 0.03 6.4E-07 54.3 18.3 219 75-317 72-318 (968)
135 KOG2274 Predicted importin 9 [ 97.3 0.016 3.5E-07 56.9 16.7 235 85-328 461-702 (1005)
136 KOG1943 Beta-tubulin folding c 97.3 0.047 1E-06 54.9 20.0 200 160-365 341-580 (1133)
137 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0011 2.3E-08 47.9 6.7 90 177-270 3-93 (97)
138 PF12717 Cnd1: non-SMC mitotic 97.3 0.035 7.6E-07 45.3 16.3 93 173-274 1-93 (178)
139 KOG4535 HEAT and armadillo rep 97.3 0.001 2.2E-08 60.5 7.7 264 84-357 305-602 (728)
140 KOG4653 Uncharacterized conser 97.3 0.01 2.2E-07 58.0 14.5 224 122-357 732-963 (982)
141 KOG4151 Myosin assembly protei 97.3 0.0057 1.2E-07 59.2 12.8 215 74-294 504-720 (748)
142 KOG0915 Uncharacterized conser 97.2 0.016 3.4E-07 60.0 15.8 285 76-367 1000-1316(1702)
143 PF12717 Cnd1: non-SMC mitotic 97.2 0.016 3.5E-07 47.3 13.4 92 132-234 2-94 (178)
144 PF12460 MMS19_C: RNAPII trans 97.2 0.015 3.2E-07 54.5 14.7 204 76-293 191-413 (415)
145 KOG1058 Vesicle coat complex C 97.1 0.034 7.4E-07 53.7 16.4 215 118-361 244-466 (948)
146 KOG3665 ZYG-1-like serine/thre 97.1 0.043 9.4E-07 54.4 18.0 173 183-355 494-694 (699)
147 PF14664 RICTOR_N: Rapamycin-i 97.1 0.047 1E-06 49.9 17.1 171 162-338 27-198 (371)
148 PF08045 CDC14: Cell division 97.1 0.047 1E-06 46.7 15.7 102 133-234 106-209 (257)
149 PF11698 V-ATPase_H_C: V-ATPas 97.1 0.00045 9.9E-09 51.2 3.2 72 287-359 44-116 (119)
150 KOG4151 Myosin assembly protei 97.1 0.0067 1.4E-07 58.8 11.7 236 111-355 498-738 (748)
151 KOG1967 DNA repair/transcripti 97.1 0.0061 1.3E-07 59.8 11.5 191 161-357 816-1023(1030)
152 KOG1058 Vesicle coat complex C 97.1 0.011 2.4E-07 56.8 12.7 245 80-365 105-354 (948)
153 KOG1248 Uncharacterized conser 97.1 0.037 8.1E-07 56.1 16.7 221 84-317 664-900 (1176)
154 PF05004 IFRD: Interferon-rela 97.1 0.077 1.7E-06 47.3 17.4 191 162-358 45-257 (309)
155 KOG0915 Uncharacterized conser 97.0 0.021 4.7E-07 59.1 14.5 220 117-340 956-1184(1702)
156 KOG0211 Protein phosphatase 2A 97.0 0.031 6.7E-07 55.3 15.2 148 204-358 400-547 (759)
157 KOG1991 Nuclear transport rece 97.0 0.11 2.4E-06 51.9 18.7 238 117-359 410-672 (1010)
158 KOG1078 Vesicle coat complex C 97.0 0.04 8.6E-07 53.5 15.3 260 76-357 247-531 (865)
159 PF11841 DUF3361: Domain of un 96.9 0.038 8.3E-07 43.4 12.4 125 110-236 4-135 (160)
160 KOG0567 HEAT repeat-containing 96.9 0.091 2E-06 44.6 15.1 196 74-315 67-280 (289)
161 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0018 3.9E-08 48.1 4.4 72 244-315 43-115 (119)
162 KOG2956 CLIP-associating prote 96.8 0.047 1E-06 49.9 14.0 185 76-273 288-477 (516)
163 PF12460 MMS19_C: RNAPII trans 96.8 0.1 2.2E-06 48.8 16.9 205 118-335 190-413 (415)
164 PF12719 Cnd3: Nuclear condens 96.8 0.21 4.6E-06 44.5 18.2 171 117-298 26-209 (298)
165 PF06025 DUF913: Domain of Unk 96.8 0.062 1.3E-06 49.3 14.7 141 107-248 95-248 (379)
166 PF05918 API5: Apoptosis inhib 96.8 0.21 4.6E-06 47.7 18.4 135 74-229 23-159 (556)
167 PF06371 Drf_GBD: Diaphanous G 96.7 0.014 3.1E-07 47.9 9.6 147 35-188 31-186 (187)
168 KOG2956 CLIP-associating prote 96.7 0.13 2.7E-06 47.3 15.7 147 203-358 330-477 (516)
169 KOG0211 Protein phosphatase 2A 96.7 0.16 3.4E-06 50.6 17.5 226 118-357 438-663 (759)
170 KOG0414 Chromosome condensatio 96.6 0.016 3.5E-07 58.5 10.4 143 117-274 919-1065(1251)
171 KOG4653 Uncharacterized conser 96.6 0.064 1.4E-06 52.7 14.0 228 73-313 726-962 (982)
172 PF02985 HEAT: HEAT repeat; I 96.6 0.0025 5.3E-08 35.3 2.8 28 162-189 2-29 (31)
173 KOG4535 HEAT and armadillo rep 96.6 0.0031 6.7E-08 57.5 4.6 151 119-273 435-603 (728)
174 KOG1967 DNA repair/transcripti 96.6 0.027 5.8E-07 55.6 11.0 189 119-313 817-1022(1030)
175 KOG3036 Protein involved in ce 96.5 0.15 3.3E-06 42.8 13.7 145 88-234 93-249 (293)
176 KOG1820 Microtubule-associated 96.5 0.18 3.9E-06 50.5 16.7 185 78-273 257-443 (815)
177 PF05918 API5: Apoptosis inhib 96.5 0.068 1.5E-06 50.9 13.1 129 121-269 27-158 (556)
178 PF12719 Cnd3: Nuclear condens 96.4 0.1 2.3E-06 46.4 13.7 170 160-340 26-209 (298)
179 PF02985 HEAT: HEAT repeat; I 96.4 0.006 1.3E-07 33.7 3.6 30 245-274 1-30 (31)
180 KOG1566 Conserved protein Mo25 96.4 0.47 1E-05 41.4 16.4 202 154-358 73-286 (342)
181 PF13764 E3_UbLigase_R4: E3 ub 96.3 1.1 2.3E-05 45.3 20.7 238 115-358 115-406 (802)
182 PF11865 DUF3385: Domain of un 96.3 0.048 1E-06 43.5 9.6 147 117-272 10-156 (160)
183 KOG0414 Chromosome condensatio 96.2 0.071 1.5E-06 54.1 12.2 142 161-316 920-1065(1251)
184 PF04078 Rcd1: Cell differenti 96.2 0.21 4.6E-06 42.6 13.4 188 87-278 8-223 (262)
185 KOG2062 26S proteasome regulat 96.2 0.21 4.5E-06 48.5 14.7 176 162-360 521-698 (929)
186 PF13764 E3_UbLigase_R4: E3 ub 96.2 0.52 1.1E-05 47.3 18.1 211 116-339 83-330 (802)
187 PF13251 DUF4042: Domain of un 96.1 0.19 4E-06 40.9 11.9 141 134-274 2-175 (182)
188 PF12530 DUF3730: Protein of u 96.1 0.81 1.8E-05 39.1 19.1 202 119-340 2-215 (234)
189 KOG2611 Neurochondrin/leucine- 96.0 1 2.2E-05 41.8 17.2 236 76-315 13-274 (698)
190 PF04078 Rcd1: Cell differenti 96.0 0.06 1.3E-06 45.8 8.9 142 91-234 67-220 (262)
191 PF14668 RICTOR_V: Rapamycin-i 95.9 0.069 1.5E-06 36.1 7.4 66 261-328 4-70 (73)
192 COG5218 YCG1 Chromosome conden 95.9 0.2 4.3E-06 47.4 12.8 129 217-353 61-194 (885)
193 KOG3036 Protein involved in ce 95.9 0.32 6.9E-06 40.9 12.6 138 219-359 95-248 (293)
194 PF01603 B56: Protein phosphat 95.9 0.41 8.9E-06 44.6 15.1 234 75-322 134-377 (409)
195 PF11701 UNC45-central: Myosin 95.9 0.022 4.8E-07 45.3 5.9 148 203-355 4-156 (157)
196 PF11701 UNC45-central: Myosin 95.8 0.07 1.5E-06 42.4 8.6 145 161-312 4-156 (157)
197 PF14668 RICTOR_V: Rapamycin-i 95.8 0.036 7.8E-07 37.4 5.8 66 135-202 4-70 (73)
198 PF01347 Vitellogenin_N: Lipop 95.8 0.8 1.7E-05 45.4 17.9 196 118-348 396-612 (618)
199 COG5116 RPN2 26S proteasome re 95.7 0.12 2.7E-06 48.5 10.3 98 244-358 551-650 (926)
200 KOG1820 Microtubule-associated 95.6 0.24 5.2E-06 49.7 13.0 188 162-358 255-443 (815)
201 COG5240 SEC21 Vesicle coat com 95.6 0.35 7.5E-06 45.7 13.1 71 119-193 266-336 (898)
202 PF01603 B56: Protein phosphat 95.6 0.86 1.9E-05 42.5 15.8 258 93-364 109-376 (409)
203 KOG2025 Chromosome condensatio 95.5 0.068 1.5E-06 51.4 8.4 128 219-355 62-190 (892)
204 PF14500 MMS19_N: Dos2-interac 95.5 1.4 3.1E-05 38.3 15.8 218 122-358 4-237 (262)
205 COG5098 Chromosome condensatio 95.4 0.6 1.3E-05 45.2 13.8 210 82-318 861-1079(1128)
206 PF08045 CDC14: Cell division 95.3 0.25 5.5E-06 42.3 10.5 99 90-189 107-207 (257)
207 KOG1078 Vesicle coat complex C 95.3 1 2.3E-05 44.2 15.4 69 119-193 247-315 (865)
208 KOG1243 Protein kinase [Genera 95.2 0.07 1.5E-06 51.3 7.5 183 75-272 331-514 (690)
209 PF04063 DUF383: Domain of unk 95.2 0.11 2.4E-06 42.6 7.8 114 170-284 5-142 (192)
210 PF08506 Cse1: Cse1; InterPro 95.2 0.3 6.5E-06 44.7 11.3 209 133-353 111-370 (370)
211 COG5116 RPN2 26S proteasome re 95.2 0.24 5.3E-06 46.6 10.5 149 124-296 523-672 (926)
212 PF11864 DUF3384: Domain of un 95.2 3.1 6.6E-05 39.7 18.7 249 87-357 42-329 (464)
213 PF06025 DUF913: Domain of Unk 95.0 1 2.2E-05 41.5 14.2 135 150-284 95-243 (379)
214 PF12231 Rif1_N: Rap1-interact 94.9 2.3 4.9E-05 39.2 16.3 264 84-355 3-300 (372)
215 KOG1243 Protein kinase [Genera 94.9 1.7 3.7E-05 42.3 15.5 254 78-355 258-512 (690)
216 KOG2025 Chromosome condensatio 94.7 0.18 4E-06 48.6 8.6 107 115-228 83-189 (892)
217 PF07814 WAPL: Wings apart-lik 94.7 1.5 3.3E-05 40.2 14.4 242 74-318 21-358 (361)
218 PF04063 DUF383: Domain of unk 94.6 0.36 7.9E-06 39.7 9.2 106 255-363 6-137 (192)
219 KOG1949 Uncharacterized conser 94.5 0.49 1.1E-05 45.8 10.8 148 120-273 177-331 (1005)
220 PF10363 DUF2435: Protein of u 94.3 0.38 8.2E-06 34.3 7.7 72 204-277 5-76 (92)
221 KOG1020 Sister chromatid cohes 94.3 3.5 7.6E-05 43.8 17.1 141 117-272 816-959 (1692)
222 KOG2999 Regulator of Rac1, req 94.2 1.5 3.3E-05 41.3 13.2 159 75-237 84-247 (713)
223 KOG2032 Uncharacterized conser 94.2 0.41 8.9E-06 44.4 9.4 143 170-315 268-415 (533)
224 COG5656 SXM1 Importin, protein 94.2 3.5 7.5E-05 40.6 15.7 234 116-358 407-670 (970)
225 KOG2933 Uncharacterized conser 94.1 0.22 4.7E-06 43.4 7.0 144 162-314 90-233 (334)
226 PF12830 Nipped-B_C: Sister ch 94.1 2.8 6.1E-05 34.4 14.7 146 76-234 10-169 (187)
227 PF06371 Drf_GBD: Diaphanous G 94.1 0.28 6E-06 40.2 7.7 109 119-231 68-186 (187)
228 KOG1020 Sister chromatid cohes 94.0 0.35 7.6E-06 50.7 9.3 131 221-362 795-925 (1692)
229 KOG2137 Protein kinase [Signal 94.0 2 4.2E-05 42.0 13.8 127 203-340 390-520 (700)
230 smart00638 LPD_N Lipoprotein N 93.9 1.7 3.6E-05 42.7 13.9 235 75-346 312-566 (574)
231 COG5656 SXM1 Importin, protein 93.7 5.8 0.00013 39.2 16.3 260 90-359 432-713 (970)
232 PF10363 DUF2435: Protein of u 93.6 0.31 6.8E-06 34.7 6.2 73 288-363 5-77 (92)
233 KOG2137 Protein kinase [Signal 93.6 0.56 1.2E-05 45.6 9.5 136 158-300 387-522 (700)
234 KOG2032 Uncharacterized conser 93.5 6.6 0.00014 36.8 18.9 258 82-357 266-530 (533)
235 PLN03076 ARF guanine nucleotid 93.4 4.5 9.6E-05 44.8 16.8 266 85-359 1148-1490(1780)
236 KOG0891 DNA-dependent protein 93.4 0.75 1.6E-05 51.5 11.2 268 84-359 491-764 (2341)
237 PF08324 PUL: PUL domain; Int 93.3 1.2 2.7E-05 38.9 10.8 145 133-279 78-237 (268)
238 KOG1993 Nuclear transport rece 93.1 7.2 0.00016 38.8 15.9 277 75-366 527-820 (978)
239 KOG1525 Sister chromatid cohes 93.0 15 0.00032 39.3 19.7 79 286-366 259-337 (1266)
240 KOG2999 Regulator of Rac1, req 92.9 5 0.00011 38.1 14.1 154 163-318 86-245 (713)
241 KOG2933 Uncharacterized conser 92.9 0.75 1.6E-05 40.2 8.3 141 204-358 90-234 (334)
242 PF13251 DUF4042: Domain of un 92.9 1.4 3.1E-05 35.8 9.7 140 219-359 2-175 (182)
243 PF11864 DUF3384: Domain of un 92.8 9.3 0.0002 36.4 24.4 244 89-360 5-287 (464)
244 COG5098 Chromosome condensatio 92.6 1.6 3.5E-05 42.4 10.8 133 172-318 908-1040(1128)
245 KOG2611 Neurochondrin/leucine- 92.6 9.1 0.0002 35.8 17.3 191 164-358 15-225 (698)
246 KOG3665 ZYG-1-like serine/thre 92.5 1.6 3.4E-05 43.7 11.4 154 141-295 494-676 (699)
247 PF12830 Nipped-B_C: Sister ch 92.5 5.2 0.00011 32.8 13.5 151 203-364 9-176 (187)
248 KOG1949 Uncharacterized conser 92.3 2.6 5.6E-05 41.2 11.7 186 163-357 177-369 (1005)
249 PF14225 MOR2-PAG1_C: Cell mor 92.0 7.6 0.00017 33.7 16.1 214 80-315 13-254 (262)
250 PF12530 DUF3730: Protein of u 91.9 7.4 0.00016 33.2 18.5 197 82-300 9-217 (234)
251 PF04388 Hamartin: Hamartin pr 91.9 4 8.6E-05 40.7 13.2 157 75-253 5-161 (668)
252 PF07814 WAPL: Wings apart-lik 91.5 8 0.00017 35.5 14.0 241 119-361 23-358 (361)
253 PF10521 DUF2454: Protein of u 91.3 2.2 4.8E-05 37.6 9.9 138 118-256 120-277 (282)
254 PF11707 Npa1: Ribosome 60S bi 91.3 11 0.00024 34.1 16.6 157 162-318 58-240 (330)
255 COG5218 YCG1 Chromosome conden 91.2 3.4 7.3E-05 39.5 11.1 103 115-226 89-193 (885)
256 cd03569 VHS_Hrs_Vps27p VHS dom 91.0 1 2.2E-05 35.1 6.7 74 74-147 41-114 (142)
257 PF14500 MMS19_N: Dos2-interac 90.7 11 0.00023 32.9 17.6 222 80-318 5-240 (262)
258 KOG1525 Sister chromatid cohes 90.6 27 0.00059 37.4 18.6 114 242-357 257-404 (1266)
259 COG5209 RCD1 Uncharacterized p 90.5 2.4 5.2E-05 35.3 8.4 141 90-233 116-269 (315)
260 PF10274 ParcG: Parkin co-regu 90.1 6.4 0.00014 32.0 10.5 120 242-362 36-169 (183)
261 cd03568 VHS_STAM VHS domain fa 90.1 1.4 3.1E-05 34.4 6.7 75 74-148 37-111 (144)
262 PF08506 Cse1: Cse1; InterPro 89.9 3.6 7.7E-05 37.8 10.2 128 132-268 225-370 (370)
263 KOG1566 Conserved protein Mo25 89.5 14 0.00031 32.6 15.4 198 74-274 79-287 (342)
264 PF11707 Npa1: Ribosome 60S bi 89.4 16 0.00035 33.0 19.4 155 119-275 58-239 (330)
265 PF12031 DUF3518: Domain of un 89.4 1 2.3E-05 37.9 5.7 83 89-173 139-229 (257)
266 PF01347 Vitellogenin_N: Lipop 89.3 4.4 9.6E-05 40.2 11.2 163 75-266 432-615 (618)
267 cd03561 VHS VHS domain family; 89.0 5.5 0.00012 30.6 9.3 95 255-358 15-112 (133)
268 PF04869 Uso1_p115_head: Uso1 88.9 16 0.00034 32.7 13.2 154 132-315 52-231 (312)
269 smart00288 VHS Domain present 88.9 1.9 4.1E-05 33.2 6.6 74 74-147 37-111 (133)
270 PF12031 DUF3518: Domain of un 88.9 1.9 4.2E-05 36.4 6.9 79 133-212 139-226 (257)
271 PF08167 RIX1: rRNA processing 88.7 9.5 0.00021 30.5 10.8 112 118-235 26-146 (165)
272 PF12074 DUF3554: Domain of un 88.7 6.4 0.00014 35.8 11.0 201 114-320 19-240 (339)
273 KOG4464 Signaling protein RIC- 88.6 17 0.00037 33.4 12.9 156 204-359 47-232 (532)
274 cd03561 VHS VHS domain family; 88.4 3.2 6.9E-05 31.9 7.6 75 74-148 37-113 (133)
275 PF11538 Snurportin1: Snurport 88.3 0.42 9.1E-06 27.8 1.9 38 11-49 2-39 (40)
276 PF08167 RIX1: rRNA processing 88.1 3.4 7.4E-05 33.1 7.8 110 161-274 26-144 (165)
277 cd03569 VHS_Hrs_Vps27p VHS dom 87.9 3.7 8E-05 32.0 7.6 75 160-234 41-116 (142)
278 smart00638 LPD_N Lipoprotein N 87.8 3.2 6.9E-05 40.8 9.1 113 244-367 393-518 (574)
279 cd03567 VHS_GGA VHS domain fam 87.5 2.9 6.4E-05 32.4 6.8 75 74-148 38-117 (139)
280 PF14225 MOR2-PAG1_C: Cell mor 87.3 19 0.00041 31.3 16.6 168 175-358 77-254 (262)
281 PF11791 Aconitase_B_N: Aconit 87.2 3.3 7.2E-05 32.2 6.7 101 245-358 23-123 (154)
282 COG5209 RCD1 Uncharacterized p 87.1 2.2 4.9E-05 35.5 6.1 97 260-358 116-218 (315)
283 KOG0413 Uncharacterized conser 87.0 2.6 5.6E-05 42.7 7.5 131 173-318 944-1076(1529)
284 PF04821 TIMELESS: Timeless pr 86.5 21 0.00046 31.1 12.5 188 74-318 13-211 (266)
285 KOG0392 SNF2 family DNA-depend 85.9 13 0.00028 39.1 11.8 235 75-318 78-328 (1549)
286 PF06685 DUF1186: Protein of u 85.8 22 0.00047 30.6 13.6 82 115-210 71-161 (249)
287 KOG1822 Uncharacterized conser 85.8 64 0.0014 35.9 17.5 213 119-340 878-1110(2067)
288 PRK14707 hypothetical protein; 85.6 70 0.0015 36.2 20.7 278 75-358 206-487 (2710)
289 PF10521 DUF2454: Protein of u 85.6 8.8 0.00019 33.8 9.7 136 203-340 120-277 (282)
290 PF14726 RTTN_N: Rotatin, an a 85.5 10 0.00022 27.3 8.2 69 284-354 28-96 (98)
291 PF03378 CAS_CSE1: CAS/CSE pro 85.1 11 0.00025 35.4 10.6 152 200-358 115-272 (435)
292 smart00288 VHS Domain present 84.9 6.3 0.00014 30.3 7.5 74 161-234 38-113 (133)
293 cd03568 VHS_STAM VHS domain fa 84.7 6.7 0.00015 30.6 7.6 74 161-234 38-112 (144)
294 PF12783 Sec7_N: Guanine nucle 84.7 15 0.00033 29.4 10.1 110 89-202 37-159 (168)
295 PF12463 DUF3689: Protein of u 84.5 29 0.00062 30.9 14.0 128 154-281 3-181 (303)
296 KOG1988 Uncharacterized conser 84.2 48 0.0011 33.6 14.5 252 76-358 26-281 (970)
297 KOG0301 Phospholipase A2-activ 83.7 47 0.001 32.7 17.7 181 122-309 550-740 (745)
298 PF08389 Xpo1: Exportin 1-like 83.5 7.3 0.00016 30.1 7.7 125 219-353 4-148 (148)
299 PF11865 DUF3385: Domain of un 83.1 5.4 0.00012 31.8 6.7 145 203-357 11-156 (160)
300 PF08324 PUL: PUL domain; Int 82.0 7 0.00015 34.1 7.6 154 77-234 66-233 (268)
301 KOG1822 Uncharacterized conser 81.8 94 0.002 34.8 16.9 198 160-363 876-1093(2067)
302 PF06685 DUF1186: Protein of u 81.7 33 0.00072 29.5 14.7 157 118-290 32-201 (249)
303 PF10274 ParcG: Parkin co-regu 81.7 13 0.00028 30.2 8.2 76 117-194 38-114 (183)
304 PF12074 DUF3554: Domain of un 81.4 32 0.00069 31.2 11.9 218 134-364 3-241 (339)
305 PF14726 RTTN_N: Rotatin, an a 81.3 16 0.00034 26.4 7.8 68 115-184 28-95 (98)
306 KOG2549 Transcription initiati 80.4 52 0.0011 31.6 12.7 144 76-232 209-370 (576)
307 PRK14707 hypothetical protein; 80.1 1.1E+02 0.0025 34.7 20.9 236 75-315 374-614 (2710)
308 PF00790 VHS: VHS domain; Int 80.1 18 0.00038 28.0 8.5 74 161-234 43-120 (140)
309 PF08767 CRM1_C: CRM1 C termin 80.0 45 0.00098 30.0 12.2 179 133-314 42-243 (319)
310 PF12726 SEN1_N: SEN1 N termin 79.9 41 0.00089 34.2 13.1 143 77-234 444-587 (727)
311 PF00790 VHS: VHS domain; Int 79.3 3.9 8.5E-05 31.7 4.6 74 74-147 42-118 (140)
312 KOG1788 Uncharacterized conser 79.3 57 0.0012 34.2 13.1 254 95-357 663-981 (2799)
313 PF13001 Ecm29: Proteasome sta 78.7 16 0.00035 35.2 9.4 173 171-358 248-443 (501)
314 PF12231 Rif1_N: Rap1-interact 78.5 56 0.0012 30.2 15.6 178 132-314 7-203 (372)
315 PF11229 DUF3028: Protein of u 78.4 64 0.0014 30.8 12.6 272 76-359 44-354 (589)
316 cd08050 TAF6 TATA Binding Prot 78.1 28 0.00061 31.7 10.3 101 76-189 180-297 (343)
317 PF08767 CRM1_C: CRM1 C termin 77.8 53 0.0011 29.6 15.1 181 175-357 42-243 (319)
318 PF09324 DUF1981: Domain of un 77.7 4.9 0.00011 28.2 4.2 67 199-269 14-84 (86)
319 KOG1992 Nuclear export recepto 77.6 86 0.0019 31.9 17.5 158 73-234 497-670 (960)
320 cd08050 TAF6 TATA Binding Prot 77.4 36 0.00079 31.0 10.8 110 203-313 211-338 (343)
321 KOG1993 Nuclear transport rece 77.2 87 0.0019 31.7 17.3 225 132-364 629-870 (978)
322 KOG1788 Uncharacterized conser 77.0 30 0.00064 36.1 10.5 271 73-358 465-761 (2799)
323 PF13001 Ecm29: Proteasome sta 76.5 70 0.0015 30.9 13.0 148 116-274 271-444 (501)
324 cd03567 VHS_GGA VHS domain fam 76.4 27 0.00058 27.1 8.3 96 253-357 14-115 (139)
325 KOG2676 Uncharacterized conser 75.8 4.9 0.00011 36.0 4.5 63 138-200 376-440 (478)
326 KOG1791 Uncharacterized conser 75.6 39 0.00085 36.6 11.4 206 150-356 1429-1658(1758)
327 PF08389 Xpo1: Exportin 1-like 75.0 24 0.00052 27.1 8.1 49 258-310 100-148 (148)
328 PLN03076 ARF guanine nucleotid 74.4 67 0.0014 36.2 13.3 181 171-358 1148-1376(1780)
329 PF09758 FPL: Uncharacterised 73.3 23 0.00049 27.8 7.1 124 191-314 15-148 (149)
330 PF04388 Hamartin: Hamartin pr 73.3 51 0.0011 33.1 11.4 69 288-358 72-140 (668)
331 KOG0413 Uncharacterized conser 73.0 89 0.0019 32.5 12.6 129 88-234 945-1075(1529)
332 KOG1832 HIV-1 Vpr-binding prot 72.4 32 0.0007 35.1 9.4 159 108-276 592-776 (1516)
333 KOG2005 26S proteasome regulat 72.4 1.1E+02 0.0023 30.5 14.4 67 288-362 642-708 (878)
334 PF08713 DNA_alkylation: DNA a 71.2 4.9 0.00011 33.6 3.5 131 213-367 61-193 (213)
335 KOG2199 Signal transducing ada 71.1 35 0.00076 31.2 8.6 96 254-358 22-118 (462)
336 PF08216 CTNNBL: Catenin-beta- 71.0 7.9 0.00017 28.3 3.9 44 261-305 63-106 (108)
337 KOG4464 Signaling protein RIC- 70.5 91 0.002 28.9 16.0 278 77-358 48-402 (532)
338 PF09758 FPL: Uncharacterised 69.8 26 0.00057 27.4 6.8 124 149-272 15-148 (149)
339 KOG0891 DNA-dependent protein 69.7 56 0.0012 37.6 11.6 227 123-359 487-720 (2341)
340 KOG3132 m3G-cap-specific nucle 69.2 5.6 0.00012 33.4 3.2 44 10-53 24-67 (325)
341 smart00567 EZ_HEAT E-Z type HE 69.2 4.7 0.0001 21.5 2.0 20 344-365 2-21 (30)
342 PF08713 DNA_alkylation: DNA a 69.1 65 0.0014 26.7 11.1 141 120-285 54-196 (213)
343 PF06012 DUF908: Domain of Unk 68.3 30 0.00064 31.3 8.0 77 133-210 237-324 (329)
344 KOG1992 Nuclear export recepto 68.2 81 0.0018 32.0 11.1 190 118-315 499-733 (960)
345 cd00197 VHS_ENTH_ANTH VHS, ENT 67.5 31 0.00066 25.5 6.8 72 75-146 38-114 (115)
346 PF08216 CTNNBL: Catenin-beta- 67.5 5.4 0.00012 29.2 2.5 42 136-178 64-105 (108)
347 KOG2038 CAATT-binding transcri 66.8 1.5E+02 0.0033 30.0 12.7 71 243-318 303-373 (988)
348 PF04869 Uso1_p115_head: Uso1 65.0 78 0.0017 28.4 9.8 102 257-358 110-231 (312)
349 PF06743 FAST_1: FAST kinase-l 64.8 22 0.00048 23.8 5.0 67 222-289 3-69 (71)
350 KOG2005 26S proteasome regulat 64.8 1.5E+02 0.0033 29.4 15.7 79 74-154 48-132 (878)
351 PF12054 DUF3535: Domain of un 64.0 1.3E+02 0.0029 28.4 12.4 79 88-171 101-179 (441)
352 KOG0803 Predicted E3 ubiquitin 62.5 2.4E+02 0.0052 30.8 17.6 254 75-338 42-330 (1312)
353 PF12726 SEN1_N: SEN1 N termin 61.8 1.9E+02 0.0042 29.5 17.8 119 204-327 443-567 (727)
354 PF01365 RYDR_ITPR: RIH domain 61.2 13 0.00029 30.9 4.2 115 113-233 39-170 (207)
355 KOG1848 Uncharacterized conser 60.5 75 0.0016 34.3 9.7 224 127-357 852-1131(1610)
356 cd03565 VHS_Tom1 VHS domain fa 60.3 52 0.0011 25.5 7.0 74 74-147 38-115 (141)
357 KOG0392 SNF2 family DNA-depend 60.2 43 0.00093 35.6 7.9 108 161-272 817-924 (1549)
358 KOG2549 Transcription initiati 60.1 1.7E+02 0.0037 28.3 12.2 123 165-298 212-351 (576)
359 cd06561 AlkD_like A new struct 59.1 17 0.00037 29.8 4.5 72 289-367 108-179 (197)
360 COG5537 IRR1 Cohesin [Cell div 57.4 2E+02 0.0043 28.3 11.2 98 171-272 286-385 (740)
361 KOG2149 Uncharacterized conser 57.1 66 0.0014 29.6 7.9 114 75-191 59-172 (393)
362 KOG1087 Cytosolic sorting prot 57.0 71 0.0015 30.4 8.4 94 252-354 13-108 (470)
363 KOG0301 Phospholipase A2-activ 56.8 2.1E+02 0.0046 28.4 14.4 176 171-354 555-742 (745)
364 KOG4524 Uncharacterized conser 56.7 25 0.00055 35.9 5.7 94 243-338 802-899 (1014)
365 PF12463 DUF3689: Protein of u 56.6 1.5E+02 0.0032 26.5 13.4 164 195-358 2-221 (303)
366 PF09324 DUF1981: Domain of un 56.4 66 0.0014 22.5 6.4 67 114-185 14-84 (86)
367 KOG2021 Nuclear mRNA export fa 56.1 1.1E+02 0.0025 30.7 9.7 56 87-148 206-261 (980)
368 PF13925 Katanin_con80: con80 55.9 82 0.0018 25.1 7.7 73 201-274 27-99 (164)
369 PF03378 CAS_CSE1: CAS/CSE pro 55.7 57 0.0012 30.8 7.7 104 172-276 42-149 (435)
370 PLN03205 ATR interacting prote 55.5 40 0.00086 31.0 6.2 113 243-355 322-443 (652)
371 PF06012 DUF908: Domain of Unk 54.5 76 0.0017 28.7 8.1 74 260-335 238-323 (329)
372 KOG1848 Uncharacterized conser 52.6 55 0.0012 35.2 7.4 99 170-273 852-958 (1610)
373 PF11791 Aconitase_B_N: Aconit 52.0 40 0.00087 26.4 5.0 43 177-231 80-122 (154)
374 KOG1832 HIV-1 Vpr-binding prot 51.2 42 0.00092 34.3 6.1 70 131-201 675-784 (1516)
375 PF04499 SAPS: SIT4 phosphatas 51.0 82 0.0018 30.2 8.0 71 286-358 21-92 (475)
376 PF12783 Sec7_N: Guanine nucle 50.5 1.3E+02 0.0028 24.0 8.3 84 199-283 70-156 (168)
377 cd03565 VHS_Tom1 VHS domain fa 50.1 1.2E+02 0.0026 23.5 7.9 74 161-234 39-117 (141)
378 PF12397 U3snoRNP10: U3 small 49.9 1.1E+02 0.0023 22.9 9.0 70 242-317 4-76 (121)
379 KOG2676 Uncharacterized conser 49.6 21 0.00046 32.1 3.6 58 305-363 375-434 (478)
380 cd03572 ENTH_epsin_related ENT 49.0 1E+02 0.0023 23.2 6.7 53 304-362 19-72 (122)
381 PF04499 SAPS: SIT4 phosphatas 48.7 94 0.002 29.8 8.0 78 111-188 56-147 (475)
382 PF14663 RasGEF_N_2: Rapamycin 47.7 38 0.00082 25.2 4.2 39 161-200 9-47 (115)
383 KOG2149 Uncharacterized conser 47.7 1.5E+02 0.0032 27.4 8.6 113 245-360 59-172 (393)
384 PF04821 TIMELESS: Timeless pr 46.9 2E+02 0.0043 25.1 13.3 44 320-363 170-214 (266)
385 cd00197 VHS_ENTH_ANTH VHS, ENT 44.8 1.2E+02 0.0027 22.2 7.3 72 243-314 36-114 (115)
386 smart00802 UME Domain in UVSB 44.1 58 0.0013 23.9 4.7 77 286-367 11-93 (107)
387 PF07923 N1221: N1221-like pro 43.9 41 0.00088 29.9 4.6 54 285-338 59-126 (293)
388 PF14764 SPG48: AP-5 complex s 43.0 3E+02 0.0066 26.2 10.5 107 216-322 281-403 (459)
389 KOG2199 Signal transducing ada 42.8 1E+02 0.0022 28.3 6.7 74 74-147 45-118 (462)
390 PF12765 Cohesin_HEAT: HEAT re 41.7 20 0.00044 21.1 1.6 40 267-309 2-41 (42)
391 PF14631 FancD2: Fanconi anaem 40.7 2.4E+02 0.0052 31.4 10.3 149 117-273 431-587 (1426)
392 PF07923 N1221: N1221-like pro 40.7 72 0.0016 28.3 5.7 56 241-296 57-126 (293)
393 KOG2073 SAP family cell cycle 40.0 2.8E+02 0.006 28.8 9.9 41 319-359 181-221 (838)
394 PF12054 DUF3535: Domain of un 39.2 3.5E+02 0.0075 25.7 10.5 51 78-129 130-180 (441)
395 cd01882 BMS1 Bms1. Bms1 is an 38.6 12 0.00026 31.7 0.4 23 28-50 11-33 (225)
396 KOG4524 Uncharacterized conser 38.3 1.8E+02 0.004 30.2 8.3 87 208-295 809-898 (1014)
397 KOG1087 Cytosolic sorting prot 38.0 77 0.0017 30.2 5.5 73 74-147 38-112 (470)
398 PF14868 DUF4487: Domain of un 37.9 2.5E+02 0.0054 27.6 9.0 61 214-274 491-553 (559)
399 COG5110 RPN1 26S proteasome re 37.4 4.1E+02 0.0088 26.0 18.2 91 259-362 619-709 (881)
400 PF14663 RasGEF_N_2: Rapamycin 37.4 89 0.0019 23.2 4.9 40 244-284 8-47 (115)
401 KOG1410 Nuclear transport rece 36.8 4.6E+02 0.0099 26.5 20.7 76 280-356 249-332 (1082)
402 KOG2085 Serine/threonine prote 36.5 1.6E+02 0.0034 27.4 6.9 67 243-315 340-414 (457)
403 KOG2022 Nuclear transport rece 36.1 5.2E+02 0.011 26.9 12.8 149 113-274 454-620 (982)
404 KOG2085 Serine/threonine prote 35.7 1.6E+02 0.0035 27.4 6.9 84 150-234 167-250 (457)
405 PF10257 RAI16-like: Retinoic 35.4 3.5E+02 0.0076 24.7 12.2 167 109-295 1-181 (353)
406 PF07571 DUF1546: Protein of u 35.1 1.4E+02 0.0031 21.1 5.4 58 214-271 17-76 (92)
407 TIGR00117 acnB aconitate hydra 34.9 1.9E+02 0.004 29.8 7.8 63 283-357 63-125 (844)
408 KOG1932 TATA binding protein a 34.9 6E+02 0.013 27.2 12.4 73 79-170 647-721 (1180)
409 PF03130 HEAT_PBS: PBS lyase H 33.0 28 0.0006 18.1 1.1 14 345-358 1-14 (27)
410 PF12397 U3snoRNP10: U3 small 32.9 2.1E+02 0.0045 21.3 10.1 70 118-191 7-76 (121)
411 PF01365 RYDR_ITPR: RIH domain 32.5 1.1E+02 0.0023 25.5 5.1 78 174-255 75-153 (207)
412 cd03562 CID CID (CTD-Interacti 32.3 2E+02 0.0044 21.0 6.6 87 256-353 17-103 (114)
413 CHL00196 psbY photosystem II p 31.8 38 0.00081 19.2 1.5 23 345-367 12-34 (36)
414 PF13925 Katanin_con80: con80 31.8 2.7E+02 0.0057 22.2 8.3 69 119-189 30-98 (164)
415 PF07539 DRIM: Down-regulated 31.5 1.9E+02 0.0042 22.4 6.0 30 243-272 16-45 (141)
416 PF06298 PsbY: Photosystem II 31.4 40 0.00086 19.2 1.6 23 345-367 12-34 (36)
417 PF01465 GRIP: GRIP domain; I 31.4 1.2E+02 0.0027 18.2 4.4 34 290-323 11-44 (46)
418 cd03572 ENTH_epsin_related ENT 31.3 2.3E+02 0.005 21.4 10.2 91 263-358 20-119 (122)
419 KOG1791 Uncharacterized conser 31.1 6.4E+02 0.014 28.2 11.0 200 112-313 1434-1658(1758)
420 cd06561 AlkD_like A new struct 30.4 2.6E+02 0.0056 22.7 7.2 73 207-284 109-181 (197)
421 PF08454 RIH_assoc: RyR and IP 30.4 2.2E+02 0.0049 20.9 6.7 41 299-339 66-107 (109)
422 COG2914 Uncharacterized protei 29.9 27 0.00058 24.8 0.9 29 10-38 68-97 (99)
423 PF08064 UME: UME (NUC010) dom 29.0 1.3E+02 0.0029 21.9 4.6 75 286-365 11-91 (107)
424 KOG2073 SAP family cell cycle 28.9 6.3E+02 0.014 26.3 10.5 180 156-340 186-377 (838)
425 KOG2021 Nuclear mRNA export fa 28.6 4.9E+02 0.011 26.6 9.2 56 216-274 206-261 (980)
426 KOG1988 Uncharacterized conser 27.3 7.2E+02 0.016 25.8 10.6 173 169-358 33-206 (970)
427 cd07064 AlkD_like_1 A new stru 27.0 3.7E+02 0.008 22.4 10.4 71 288-366 117-187 (208)
428 PF07539 DRIM: Down-regulated 26.7 3.1E+02 0.0066 21.3 10.6 82 160-254 17-98 (141)
429 PF14750 INTS2: Integrator com 26.6 8.3E+02 0.018 26.3 11.2 121 115-235 873-1026(1049)
430 KOG4231 Intracellular membrane 25.8 1.1E+02 0.0024 29.3 4.2 64 293-357 335-398 (763)
431 KOG2011 Sister chromatid cohes 25.5 8.2E+02 0.018 26.2 10.6 134 128-271 298-433 (1048)
432 KOG2374 Uncharacterized conser 25.2 2E+02 0.0044 27.4 5.8 86 119-211 8-93 (661)
433 PF15178 TOM_sub5: Mitochondri 25.0 96 0.0021 18.7 2.5 10 19-28 10-19 (51)
434 PRK13240 pbsY photosystem II p 24.9 48 0.001 19.4 1.2 23 345-367 12-34 (40)
435 PF08064 UME: UME (NUC010) dom 24.6 2.4E+02 0.0052 20.6 5.2 70 160-234 11-85 (107)
436 PLN03205 ATR interacting prote 24.5 5.9E+02 0.013 23.8 9.4 174 120-295 326-544 (652)
437 PF14868 DUF4487: Domain of un 24.0 4.4E+02 0.0096 25.9 8.2 28 291-318 528-555 (559)
438 PF04054 Not1: CCR4-Not comple 23.5 6E+02 0.013 23.6 9.9 87 243-340 261-353 (379)
439 KOG0889 Histone acetyltransfer 23.3 4.8E+02 0.01 31.9 9.1 172 160-336 1126-1327(3550)
440 PF14666 RICTOR_M: Rapamycin-i 23.2 4.7E+02 0.01 22.2 11.4 82 264-357 143-224 (226)
441 PF05997 Nop52: Nucleolar prot 23.0 2.7E+02 0.0058 23.4 5.9 69 78-148 4-73 (217)
442 COG5095 TAF6 Transcription ini 22.5 4.6E+02 0.0099 23.5 7.1 111 161-272 231-358 (450)
443 COG5095 TAF6 Transcription ini 22.1 5.8E+02 0.012 22.9 9.5 98 169-276 207-319 (450)
444 KOG0889 Histone acetyltransfer 21.9 1.2E+03 0.026 29.0 11.7 180 116-296 1125-1329(3550)
445 KOG2312 Predicted transcriptio 21.2 28 0.00061 34.1 -0.3 119 216-336 48-169 (847)
446 KOG2219 Uncharacterized conser 20.9 2.5E+02 0.0055 27.8 5.7 166 172-337 39-219 (864)
447 cd03562 CID CID (CTD-Interacti 20.8 3.4E+02 0.0074 19.8 6.6 83 215-306 17-99 (114)
448 KOG1980 Uncharacterized conser 20.7 91 0.002 30.6 2.8 25 27-51 50-74 (754)
449 PF12243 CTK3: CTD kinase subu 20.5 4.1E+02 0.009 20.6 8.1 97 165-272 13-118 (139)
450 PF08623 TIP120: TATA-binding 20.5 1.3E+02 0.0029 24.2 3.4 77 259-340 42-118 (169)
451 PF08620 RPAP1_C: RPAP1-like, 20.1 2.1E+02 0.0046 19.3 3.8 29 75-103 40-68 (73)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-71 Score=464.04 Aligned_cols=356 Identities=59% Similarity=0.898 Sum_probs=327.4
Q ss_pred cchHHHHhhccc--CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCC-CCCCCCCcchhhhhh-hccHHHHHHh
Q 017651 7 ARAEVRRNRYKV--AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ-FPPPAPASNLNLQTK-LESLPAMVAG 82 (368)
Q Consensus 7 ~~~~~r~~~~k~--~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~-~~~~~~~~~~~~~~~-~~~i~~l~~~ 82 (368)
..+++|+.+||. .+.++|+|++|++.++|+||+||+|.|.||||....+++ +++..+ .+++ -..+|.+.+.
T Consensus 5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~-----meqq~~~elp~lt~~ 79 (526)
T COG5064 5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIP-----MEQQFYSELPQLTQQ 79 (526)
T ss_pred cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCc-----hhHHhhhhhHHHHHH
Confidence 467789999998 477999999999999999999999999999998443322 222111 1122 2368999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCCh
Q 017651 83 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (368)
Q Consensus 83 l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 162 (368)
|.|+|.+.+..|+..+|+++|.+.+|+++.++++|++|.|++++......-++.+|+|+|+|+++++..++..++++|++
T Consensus 80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV 159 (526)
T COG5064 80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV 159 (526)
T ss_pred HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence 99999999999999999999999999999999999999999999654436889999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCC-CCCChh
Q 017651 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGK-PQPPFD 240 (368)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~ 240 (368)
|.++++|.+++.+++++++|+|||+|+|++.+|+.+++.|++++++.++..+. +..+.+++.|+|+|||+++ |.+...
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~ 239 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS 239 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999995443 6799999999999999998 888888
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
.+...+|.|.+++.+.|+++..+|||+++||++++.+.++.+++.|+.+.|+++|.+++..++.+|++.+||++++++.+
T Consensus 240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q 319 (526)
T COG5064 240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ 319 (526)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhcC
Q 017651 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368 (368)
Q Consensus 321 ~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~vi 368 (368)
++.+++.|+++.+..+|+++ ...+||+|||+|+||++|+.+|||+||
T Consensus 320 TqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavi 366 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVI 366 (526)
T ss_pred eehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHH
Confidence 99999999999999999999 889999999999999999999999986
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-67 Score=473.97 Aligned_cols=355 Identities=70% Similarity=1.049 Sum_probs=324.7
Q ss_pred hHHHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCC
Q 017651 9 AEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDD 87 (368)
Q Consensus 9 ~~~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~ 87 (368)
...|.++||+ +++++|+|+||++..+|+||+||+|.|+|||+..++....+.... ........+.++..+.|++
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~S~~ 79 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELLSD-----SQSQASNLELMLAALYSDD 79 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccccch-----hHHHhhhhHHHHHHHhCCC
Confidence 3467777887 799999999999999999999999999999993222221111100 1112234788899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH
Q 017651 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (368)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 167 (368)
++.+..+...++++++.+.+|++..++..|++|.|+++|...+++.++.+|+|+|+||++++++++..+++.|++|.|+.
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 99999999999999999989999999999999999999987776999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchH
Q 017651 168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPAL 246 (368)
Q Consensus 168 lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~ 246 (368)
++.+++..++++|+|+|+|++++++.+|+.++.+|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999966656689999999999999999 889999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH
Q 017651 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT 326 (368)
Q Consensus 247 ~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 326 (368)
|.|..++++.|++|..+|||+++||++++++.++.+++.|+++.|+.+|.+.++.++.+|++++|||++|++.+++.+++
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhcC
Q 017651 327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368 (368)
Q Consensus 327 ~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~vi 368 (368)
.|+++.|..++..++...+|++|||+|+||++|+++|||+||
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVi 361 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVI 361 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 999999999999554778999999999999999999999985
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-44 Score=322.77 Aligned_cols=289 Identities=30% Similarity=0.480 Sum_probs=262.7
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.+|.+++.+.. .++.++++|+|+|.+++++. ......++++|.+|.|+.++.+++ ..++.+|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 679999999974 55999999999999999986 788888999999999999999999 899999999999999999999
Q ss_pred hHHHhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCC-hhhH-HHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651 153 TKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDS-PRCR-DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~-~~~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
++.+++.|++++|+.++..++. .+...+.|+|+|||.+. |... +.+. .+++.|..++ ++.|.++...+||++++
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~--~iLp~L~~ll-~~~D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA--PILPALLRLL-HSTDEEVLTDACWALSY 263 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH--HHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 9999999999999999987664 78899999999999765 3221 2333 3789999999 99999999999999999
Q ss_pred hhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-CCCcchHHHHH
Q 017651 230 FCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPAL 307 (368)
Q Consensus 230 l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~ 307 (368)
|+.+.+.... ....+++|.|+++|.++++.++..|+.+++|++.+++.+++.+++.|+++.|..+|. ++...++..||
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence 9988644433 344899999999999999999999999999999999999999999999999999997 66777999999
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhcC
Q 017651 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVMI 368 (368)
Q Consensus 308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~vi 368 (368)
|+|+||+.|+.++++.+++.|++|.|+.+|++. +..+||||+|+|+|+++ |+++|+.+++
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 999999999999999999999999999999999 89999999999999998 8999998863
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-43 Score=295.41 Aligned_cols=289 Identities=27% Similarity=0.395 Sum_probs=256.3
Q ss_pred ccHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 74 ESLPAMVAGV-WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l-~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+.+|.+++.+ ..+..-.+++|+|+|.++.|+. .....-++++|.+|.|+++|.+++ .+++.++.|+|+|++.+++.+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence 5699999999 5667789999999999999986 667777889999999999999998 899999999999999999999
Q ss_pred hHHHhhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651 153 TKVVIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
++.+++.|++.+++.++.++. ..+...+.|+|+|||... |..-...+. ..+|.|.+++ ...|+++...|||+++.
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is-qalpiL~KLi-ys~D~evlvDA~WAiSY 269 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS-QALPILAKLI-YSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH-HHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence 999999999999999998754 588999999999999643 222122222 2688888888 88899999999999999
Q ss_pred hhcCCCCCChhh-hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHH
Q 017651 230 FCRGKPQPPFDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 308 (368)
Q Consensus 230 l~~~~~~~~~~~-~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~ 308 (368)
|+.++....... ..++.+.|+++|.+++..+++.++..++|+..+++.+.+.++..|+++.+..+|+++...++..|||
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 999863333333 3677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC---CHHHhhhc
Q 017651 309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQVM 367 (368)
Q Consensus 309 ~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~i~~v 367 (368)
+|+|+.+++.++.+++++.+++|.|+++|++. +..++|+|||+++|.++| -|++|.++
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence 99999999999999999999999999999998 999999999999999974 67887765
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=285.31 Aligned_cols=289 Identities=21% Similarity=0.253 Sum_probs=245.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.+|.++..+.++++..+..|++.+.+++... .+.+..+++.|+||.|+++|++++++.+|++|+|+|+||++++++++
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 57999999999999999999999998887654 55788899999999999999876547999999999999999999999
Q ss_pred HHHhhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHH---HHhcCChHHHHHH
Q 017651 154 KVVIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSPR-----------CRDL---VLSQGALIPLLAQ 210 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nla~~~~~-----------~~~~---i~~~~~i~~l~~~ 210 (368)
..+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .++. ....|++.+++.+
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 99999999999999998654 35699999999999997543 1221 1345778888888
Q ss_pred hccccchhHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhchHHHHHHhhcCCCHHHHHHHHH
Q 017651 211 LNERAKLSML----RNATWTLSNFCRGK-PQPPFDQ-------------------VRPALPALAQLVHSNDEEVLTDACW 266 (368)
Q Consensus 211 l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~~-------------------~~~~~~~L~~lL~~~d~~v~~~a~~ 266 (368)
+ ..++.... ..++|+|.+|++++ |...... ..+.++.|+.+|...+.+++.+++|
T Consensus 348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 7 44443333 35789999999987 3332211 1345678889999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHH
Q 017651 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 346 (368)
Q Consensus 267 ~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~ 346 (368)
+|.+++.++.+..+.+.+.|+++.|+++|.+++..++.+|+++++|++.++++++..+++.|++|.|+++|.++ ++.++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq 505 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK 505 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhcCCHHHhhh
Q 017651 347 KEACWTISNITAGNRDQIQV 366 (368)
Q Consensus 347 ~~a~~~l~nl~~~~~~~i~~ 366 (368)
++|+|+|+|++.+ +++++.
T Consensus 506 eeAawAL~NLa~~-~~qir~ 524 (2102)
T PLN03200 506 EDSATVLWNLCCH-SEDIRA 524 (2102)
T ss_pred HHHHHHHHHHhCC-cHHHHH
Confidence 9999999999985 444444
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.3e-31 Score=271.13 Aligned_cols=283 Identities=17% Similarity=0.135 Sum_probs=252.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.++.|+.++...+.+.|..++++|+.++.++ ...++.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788999999999999999999999997664 677888999999999999999988 8999999999999999888899
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
..+++.|++|.|+.+|.+++..+++.|+|+|+||+.+++..+..+...|++++|+++| .+.+...+..++|+|.+|+..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888999999999999 667899999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH---HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND---KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
... ..++.++.+|.++++.++..++.+++++....+. ..+.....|+++.|+.+|.++++.++..|+++|
T Consensus 561 ~d~-------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 561 ADA-------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred cch-------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 422 2457889999999999999999999998653222 223334579999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017651 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM 367 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v 367 (368)
+++++++..+++.++..|+++.++.+|+++ +..++++|+|+|+|++. ++++|+.++
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL~nL~~~~~~~q~~~~ 690 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARALAALSRSIKENRKVSY 690 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999 99999999999999997 677776543
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-25 Score=191.28 Aligned_cols=279 Identities=22% Similarity=0.289 Sum_probs=248.8
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
.+++..+.++-++.+...|..++.+|.++... .++.+.++..|.+|.|++++++++ +++|+.++.+++||+- +...
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaV-d~~~ 241 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAV-DRRA 241 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhh-hHHH
Confidence 35678888877889999999999999999754 577888999999999999999999 9999999999999999 4778
Q ss_pred hHHHhhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651 153 TKVVIDHG--AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 153 ~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
++.+.+.+ .+|.|++++.++++.++.+|..+|+||+.+.. ++..+.+.|.+|.++++| +++.....-....|+.|+
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNI 319 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhc
Confidence 88888888 99999999999999999999999999999874 677889999999999999 777667777888999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651 231 CRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 309 (368)
+-.+-+.......|++..|+.+|...| ++++..|..+|.+|+.........+.++|.++.+..++.+....++...-.+
T Consensus 320 sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac 399 (550)
T KOG4224|consen 320 SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC 399 (550)
T ss_pred ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence 988655555566899999999998765 6699999999999998777777889999999999999998889999999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
++.++... .....+.+.|+++.|+.++-+. +.+++-.|+-+|.|++..
T Consensus 400 ~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 400 IAQLALND-NDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHhcc-ccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence 99998754 4677899999999999999988 999999999999999974
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-24 Score=184.69 Aligned_cols=277 Identities=23% Similarity=0.322 Sum_probs=240.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcC--cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG--VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g--~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
+++|.|+..++++|...|+.++.++.++.-. ....+.+.+.+ ++|.|++++.+++ +.++-.|..+|.|++++ .+
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd--~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasd-t~ 283 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVD--RRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASD-TE 283 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhh--HHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhccc-ch
Confidence 6799999999999999999999999999653 45566677777 9999999999999 89999999999999995 56
Q ss_pred chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651 152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
.+..++++|.+|.++.+|+++.-...-....|+.||+.+. -..-.+.+.|++.||+++|...++++++.++..+|+||+
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 7778899999999999999988888888999999999764 345678899999999999977778889999999999999
Q ss_pred cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 232 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 232 ~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
-.. .+.......+.+|.+..++.+..-+++.....|++.|+-.+.+. ..+.+.|+++.|++++.+.+.+++-.|..++
T Consensus 363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhhcCCcceeecccCccchhhcccHHHHH
Confidence 854 44445555899999999999999999999999999999775554 7899999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHH---c---CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 311 GNIVTGDDFQTQCIIT---Y---GALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~---~---g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+|+++.-+.... +++ + |+-..|..++.+. +..++.-+.|++..+..
T Consensus 442 ~Nlss~v~~Yar-viEawd~P~~gi~g~L~Rfl~S~-~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 442 INLSSDVEHYAR-VIEAWDHPVQGIQGRLARFLASH-ELTFRHIARWTIQQLLE 493 (550)
T ss_pred HhhhhhhHHHHH-HHHHhcCcchhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH
Confidence 999986664443 333 2 6777889999998 88999999999999886
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=2.1e-18 Score=165.05 Aligned_cols=278 Identities=22% Similarity=0.265 Sum_probs=224.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.++.|++.|.+++.+....++..|.++.- . .++...+.+.|+++.|++++.+++ .+++..|+++|.|++. +++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSI-F-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 569999999999999999999999999943 3 567888999999999999999988 8999999999999999 48889
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
..+++.|++|.|+.+|.++ ..+..|+.+|.+|+.+. ..+..+...++++.+++++...++..+...+++.+.|++.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999865 45677999999999876 57899999999999999886666665555555665555544
Q ss_pred CCCCCh-------------------------------------hhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC
Q 017651 234 KPQPPF-------------------------------------DQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 234 ~~~~~~-------------------------------------~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~~l~~~~ 275 (368)
+..... ....+.+..|+.++.. +++++...++++|+||...+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 322111 1112333444444443 46789999999999999776
Q ss_pred hHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHHHH
Q 017651 276 NDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT 352 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~ 352 (368)
.+....+-+.++++.+..+|..+ .+++...++..+|.++. .+.....+.+.|+++.|+.+|...+ +.++.-+.+++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 66666666789999999999644 46789999999999986 4445666778999999999998763 67899999999
Q ss_pred HHHHhcC
Q 017651 353 ISNITAG 359 (368)
Q Consensus 353 l~nl~~~ 359 (368)
+..+...
T Consensus 602 f~~ll~h 608 (708)
T PF05804_consen 602 FYQLLFH 608 (708)
T ss_pred HHHHHcC
Confidence 9999985
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=2.6e-17 Score=157.54 Aligned_cols=269 Identities=20% Similarity=0.179 Sum_probs=214.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
..++-.++..++ .+.+.+...|.+++.. ......+.+.|+++.|+++|.+++ .++...++.+|.+++- ..+++..
T Consensus 252 ~kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~ 326 (708)
T PF05804_consen 252 LKKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDE 326 (708)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHH
Confidence 344444555444 3555777888888642 444566889999999999999987 8999999999999999 4788999
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
+.+.|+++.|.+++.+++..++..++++|.||+.+. ..|..++..|++|+|+.+|. + +..+..++.+|++++..+.
T Consensus 327 m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 327 MAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDE 402 (708)
T ss_pred HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHh
Confidence 999999999999999999999999999999999886 57999999999999999994 3 3455678999999999875
Q ss_pred CCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651 236 QPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
........+++|.+++++- .+++++...+++.+.|++... ...+.+.+.|+++.|+...-.... .-.+.++-|++
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS 478 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNIS 478 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 5555555789999988764 457788888999999999875 445788888899999988633322 23456888999
Q ss_pred cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
.+++.. +..+. +++..|..++..+++++..-++..+|+|++..
T Consensus 479 ~h~~~~-k~~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 479 QHDGPL-KELFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred hcCchH-HHHHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 887533 33333 47777888888876889999999999999864
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.4e-17 Score=152.44 Aligned_cols=262 Identities=24% Similarity=0.354 Sum_probs=229.7
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 75 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
.+..|+..+... |+..|++|+..+..+++....+....+--.-++|.|+.+|++.++.++...|+++|++++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 367888888865 9999999999999998876444444444566899999999998889999999999999999889999
Q ss_pred HHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651 154 KVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
..+++.++||.|+.-|. -+..++.++++.+|-.|+...+ ..+++.|++...+..| ......+++.|+.+..|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999665 4778999999999999998876 3688999999999999 77789999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcCCC----CcchHHH
Q 017651 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHP----SPSVLIP 305 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~ 305 (368)
.-+...+..+...+|.|..+|+..|.+....+|-++.+++++ .++..+.+...|++....++|.-. +..+..-
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 888888888889999999999999999999999999999864 578889999999999999998543 3456778
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 306 a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
.++.+.-++++++.....++..++...+..+|...
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 88999999999998888889989999999988754
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.70 E-value=9.1e-15 Score=137.37 Aligned_cols=278 Identities=24% Similarity=0.312 Sum_probs=218.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--c
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--N 152 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~ 152 (368)
.+|+.+.+|.++++..|-.|+..+..+.-+. +.-...+.+.|.|+.||.+|.++. .+++..|+|+|.|++.++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 5899999999999999999999999886653 555556778999999999999999 89999999999999987766 8
Q ss_pred hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHH--------------------------------
Q 017651 153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVL-------------------------------- 199 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~-------------------------------- 199 (368)
+-.+.+.++|+.++.+|+. .|.++++.+..+|+||+..+ .++..++
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 8889999999999999986 78899999999999987663 2322222
Q ss_pred ------------------------hcCChHHHHHHhc-------------------------------------------
Q 017651 200 ------------------------SQGALIPLLAQLN------------------------------------------- 212 (368)
Q Consensus 200 ------------------------~~~~i~~l~~~l~------------------------------------------- 212 (368)
..|.|+.|+..+.
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 2344555544441
Q ss_pred ----------------------------------------------------------cccchhHHHHHHHHHHHhhcCC
Q 017651 213 ----------------------------------------------------------ERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 213 ----------------------------------------------------------~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
...+..+.+.++.+|-||+-+.
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 0111234555666777766554
Q ss_pred CC-CCh-----hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC------Ccch
Q 017651 235 PQ-PPF-----DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP------SPSV 302 (368)
Q Consensus 235 ~~-~~~-----~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~v 302 (368)
.. ... ...+.++|.|+++|+.+|..|...++.+|.||+.+... +.++..++++.|+..|... +.++
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 11 111 11256789999999999999999999999999987433 4556688999999999433 3678
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
...+|.++.|++..+......+++.++++.|+-+..+..++...+.|+..+..|=
T Consensus 629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999988767788999988887764
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.69 E-value=5.1e-15 Score=126.18 Aligned_cols=196 Identities=20% Similarity=0.254 Sum_probs=165.0
Q ss_pred HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 017651 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192 (368)
Q Consensus 113 ~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~ 192 (368)
+++.+-+..|+.+|+..++|.++..+..++++.+. .+.+++.+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 35667789999999987669999999999999877 58889999999999999999999999999999999999998864
Q ss_pred hhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 017651 193 RCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (368)
Q Consensus 193 ~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l 271 (368)
.+..+.. .++.+++....+ -+..++..++.+|.||+.... ....+.+.+|.++.+|.+++..++..++++|.||
T Consensus 87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4455443 577777765444 478999999999999986532 2333467899999999999999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHHHHHHHhhc
Q 017651 272 SDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVT 315 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~ 315 (368)
+..+ +....++.++++..++.++... +.++...++..+.||..
T Consensus 162 S~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 162 SENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred ccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9874 5557888899999999999765 67889999999999964
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.2e-14 Score=121.85 Aligned_cols=281 Identities=14% Similarity=0.161 Sum_probs=224.9
Q ss_pred ccHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC-
Q 017651 74 ESLPAMVAGVW--SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS- 150 (368)
Q Consensus 74 ~~i~~l~~~l~--~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~- 150 (368)
+++..++..|. .++.++....+..+++-+-.. .-+.+.+++.++++.+.+.|......++.++++|++.-+..++.
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 45667777775 566778888888888876654 66677899999999999888765545788999999999987532
Q ss_pred --------cchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch---h
Q 017651 151 --------ENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL---S 218 (368)
Q Consensus 151 --------~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~---~ 218 (368)
.....+...|++..|+..+.. -++.+...++.+|+.|+..++ ++..+.+.|++..+++++..+.+. .
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~ 302 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRT 302 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence 223567788888999998875 457788889999999998874 668899999999999999554433 4
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC
Q 017651 219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV--HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 296 (368)
+.+.++..|..|+..+..+......++.+.++.++ +++||.|...++.+++.|+-..++....+++.|+-...++.++
T Consensus 303 l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 303 LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence 55788999999998877777777789999988877 4568999999999999999988999999999999999999995
Q ss_pred C-C-CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 297 H-P-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 297 ~-~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
. | ...++..||+.|-||+..+.++...++. .+++.|+..-... ++.....|--+|..+..
T Consensus 383 ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~-h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 383 AHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKAN-HETCEAAAKAALRDLGC 444 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence 3 3 3578999999999999988888887777 4566666666666 67777777777777654
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=3.5e-15 Score=146.38 Aligned_cols=265 Identities=20% Similarity=0.178 Sum_probs=221.3
Q ss_pred HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC--------C---CHHHHHHHHHHHHHHhcCCCcchHHHhh-CC
Q 017651 93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--------D---YPQLQFEAAWALTNIASGTSENTKVVID-HG 160 (368)
Q Consensus 93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~--------~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g 160 (368)
.|+..|-++ +.+ .++...+-+.|++..+-+||.-. + +-.+|.+|..+|+||+.++..++..+.. .|
T Consensus 317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 566666666 332 67777788899988888777521 1 2469999999999999998888777665 58
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCC
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQP 237 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~ 237 (368)
.+..++..|.+..+++.+..+.+|.||+=. +...+..+-+.|-+..|...-.....+..+..++.+||||+-+. ...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 999999999999999999999999999832 23466778888999999988767777888999999999999877 334
Q ss_pred ChhhhhchHHHHHHhhcCC----CHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 238 PFDQVRPALPALAQLVHSN----DEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~----d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
.+-.+.|.+..|+.+|... ...|+..+-++|.|++.. ..+..+.+.+++++..|+++|++.+..+..++|++|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 4556689999999999654 467888888888887643 455667788999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
.||...+++..+.+++.|.++.|..++.+. +..+...++-+|-|+...-
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999 8999999999999998754
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=4.7e-14 Score=119.83 Aligned_cols=274 Identities=12% Similarity=0.146 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (368)
+++....++++.+|..+..+. ..+.+..+...++.+|... ++.++......++..-|..++.+++.+++.++.+
T Consensus 118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 456666677777776664432 3456777888999998643 2367888888888888888899999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 164 IFVKLLAS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 164 ~L~~lL~~-~~~~v~~~a~~~L~nla~~~~---------~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
.+...|.. ....+...+.|++.-+..++. .....+...|++..|+..+.-..++++...++.+|..|+-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99976664 445688889999999975542 34456777888999999997777899999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCC-CHH---HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc--CCCCcchHHHHH
Q 017651 234 KPQPPFDQVRPALPALAQLVHSN-DEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLIPAL 307 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~a~ 307 (368)
..........|++..++.++.+. +.. ....++..|..|+-. ++....+++.|+.+.++.++ .+++|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 54434444579999999999774 333 456677777777754 55668999999999999987 456899999999
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhCC-CCCccHHHHHHHHHHHHhcCCHHHh
Q 017651 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
.+++-++--.++....+++.|+-...++.++. +....+++.|||.|.||+..+.++-
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999888888899999998888888864 4466899999999999998766654
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.64 E-value=1.8e-13 Score=129.61 Aligned_cols=277 Identities=18% Similarity=0.220 Sum_probs=221.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
..+.+...|.++++.++..+++.+.+++... ......+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~ 154 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE 154 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence 4677888999999999999999999997543 444566778999999999999999 89999999999999985 55666
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.++..+.++.|..++..+++.++-.+..++.+++..++.....+.+.|+++.++..+ .++|.-++.+++.++..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence 788888899999999988888999999999999999999999999999999999999 5688999999999999999965
Q ss_pred CCCChhhhhchHHHHHHhhcCC--CH---H-HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHH
Q 017651 235 PQPPFDQVRPALPALAQLVHSN--DE---E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 308 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~--d~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~ 308 (368)
....+....++++.|..++... |+ . .....+..+++++...+..+.... ..++..+...+.+.++..+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence 5555566689999999999654 23 2 223344677788875333322111 245666777778899999999999
Q ss_pred HHHHhhcCChHHHHHH-HHc-----CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 309 TVGNIVTGDDFQTQCI-ITY-----GALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 309 ~l~nl~~~~~~~~~~~-~~~-----g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++|.+++.. +....+ ... .++..+.....++ ..++|..+.-+++++..
T Consensus 313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILT 366 (503)
T ss_pred HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh
Confidence 999999644 455655 333 2455555666666 77899999999999965
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.64 E-value=1.3e-13 Score=130.49 Aligned_cols=272 Identities=18% Similarity=0.197 Sum_probs=215.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 157 (368)
Q Consensus 78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 157 (368)
.++..+.+.+.+....++..|.+++... ....+ ..++.+.|...|.+++ +.+|..+++.|.+++.++......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~---~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL---SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc---CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 3777888888888888889999998643 22222 5667899999999999 99999999999999998777778888
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 237 (368)
+.++++.++.++.+++..+...|+.+|.+|+...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999887654 5677878888899988 5557778889999999999775332
Q ss_pred Ch-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC--c---chH-HHHHHHH
Q 017651 238 PF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS--P---SVL-IPALRTV 310 (368)
Q Consensus 238 ~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~---~v~-~~a~~~l 310 (368)
.. ....|+++.++..+.++|.-++..++.++..|+. .+...+.+.+.|+++.|...+...+ + .+. ...+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 22 2236799999999999999999999999999999 4556689999999999999995432 2 222 3334777
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
|+++...+....... ..++..+.+++.+. ++..+..|.-+++.|+..
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST 320 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC
Confidence 888875443332121 24566677777787 888999999999999864
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.63 E-value=9.2e-15 Score=111.84 Aligned_cols=119 Identities=36% Similarity=0.614 Sum_probs=111.1
Q ss_pred HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 017651 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (368)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~ 191 (368)
.+++.|+++.|+++|.+++ +.++..++++|++++..+++....+++.|+++.++.+|.++++.++..++|+|+||+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4668899999999999988 899999999999999988899999999999999999999999999999999999999998
Q ss_pred hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 192 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
+..+..+...|+++.++..+ .+.+..+++.++|+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 88888889999999999999 67789999999999999974
No 20
>PRK09687 putative lyase; Provisional
Probab=99.63 E-value=9.3e-14 Score=121.16 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=150.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.|...|.+.+..++..|++.|..+-. ..+++.+..++.+++ +.+|..|+|+|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 46778888888888888888888876622 224667777777777 88888888888887652111
Q ss_pred HHhhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 155 VVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 155 ~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
...+++.|..+ +.++++.|+..|+.+||+++...... ...++..+...+ .+++..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11356777766 56778888888888888886433211 011344455555 56677888888888865532
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
...++.|+.+|.++++.|+..|+.+|+.+....+. +++.|+..|.+.++.+|..|++.||.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 24778888888888888888888888887433222 356677777777888888888888775
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 314 ~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
-. + ..++.|+..|.++ + ++..|+.+|+++.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig 249 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELG 249 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcC
Confidence 32 1 2355555555554 2 4555555555554
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.56 E-value=2.3e-13 Score=116.07 Aligned_cols=196 Identities=21% Similarity=0.247 Sum_probs=162.6
Q ss_pred HhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
+.+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ .++++.++..|++++.|++...
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCCh
Confidence 3566778999999985 68999999999999998775 6899999999999999999 8889999999999999999775
Q ss_pred CCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651 235 PQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
++.. .+...++.+.+.+.+ .|.+++..++.+|.+|+..++.+ .++ .+.++.++.+|.+++..++..++++|.|
T Consensus 86 en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3332 234466666665433 37899999999999998664432 333 2468999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
|+...+ .+..++..+++..++.++..+...++-..+.+.+.||..+
T Consensus 161 LS~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 998554 6777999999999999999876788999999999999763
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.56 E-value=9.3e-14 Score=106.23 Aligned_cols=115 Identities=41% Similarity=0.605 Sum_probs=108.1
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 322 (368)
.++++.+++++.+.+++++..++++|++++...++....+++.|+++.++.+|.++++.++..|+++++|++.+.+....
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 57899999999999999999999999999999888888899999999999999999999999999999999998887888
Q ss_pred HHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 323 ~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.+.+.|+++.+..++.++ +..+++.++|+|.|++.
T Consensus 86 ~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 888999999999999998 89999999999999974
No 23
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=3e-13 Score=117.94 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=161.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
-++.|+.+|.+++ ..++..|+++|..+-. ..+++.+..++.++++.++..++|+|+.|-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3788999999988 8999999999997764 23678888899999999999999999998643211
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 277 (368)
....++.|..++..+++..++..++.+|++++...... ....++.+...+.++++.|+..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11256777777658889999999999999997543222 12356667778888899999999999987752 2
Q ss_pred HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
..++.|+.+|.++++.+|..|+.+||.+..+++ .+++.|+.+|.+. ++.||.+|+|+|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 247889999999999999999999999954444 3466788889988 9999999999999863
Q ss_pred cCCHHHhhh
Q 017651 358 AGNRDQIQV 366 (368)
Q Consensus 358 ~~~~~~i~~ 366 (368)
++..+..
T Consensus 221 --~~~av~~ 227 (280)
T PRK09687 221 --DKRVLSV 227 (280)
T ss_pred --ChhHHHH
Confidence 4444443
No 24
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.55 E-value=3e-13 Score=127.35 Aligned_cols=239 Identities=21% Similarity=0.252 Sum_probs=189.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CR 195 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~--~~ 195 (368)
-+|..+.+|.+.+ +.+|..|+.-+..++.++.+.+..+-+.|+|+.|+.+|.+.+.+++.+|+|+|.||...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4788999999988 89999999999999999999999999999999999999999999999999999999976544 66
Q ss_pred HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC--------------CCHHHH
Q 017651 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS--------------NDEEVL 261 (368)
Q Consensus 196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~--------------~d~~v~ 261 (368)
-.+.+.++++.++++|.+..|.++++.++.+|+||+..+ ......+...+++|...+-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 788899999999999977789999999999999999883 33333445566665554311 135788
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcC--------------------------------------------
Q 017651 262 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLG-------------------------------------------- 296 (368)
Q Consensus 262 ~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~-------------------------------------------- 296 (368)
..+.+||.|++....+..+.+.+. |++..|+.++.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999998666555555443 44544443332
Q ss_pred ----------------------------------------------------------CCCcchHHHHHHHHHHhhcCCh
Q 017651 297 ----------------------------------------------------------HPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 297 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
+.++.+.+.++++|.|++.+..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 1112235778899999987653
Q ss_pred ----HHHHHH-HHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 319 ----FQTQCI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 319 ----~~~~~~-~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
.....+ ..+.+++.++.+|..+ ++.+.+.++.+|.|++.+
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD 596 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC
Confidence 333444 5678999999999999 999999999999999975
No 25
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.52 E-value=4e-15 Score=107.28 Aligned_cols=90 Identities=47% Similarity=0.615 Sum_probs=60.0
Q ss_pred cchHHHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCC--cchhhhhhhccHHHHHHhh
Q 017651 7 ARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPA--SNLNLQTKLESLPAMVAGV 83 (368)
Q Consensus 7 ~~~~~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~l 83 (368)
+..+.|++.||+ |++++++|+||++..++|||+||||.|.|||++....+...+.... ...........++.++..+
T Consensus 4 ~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v 83 (97)
T PF01749_consen 4 KKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGV 83 (97)
T ss_dssp ---GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHH
T ss_pred cCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhc
Confidence 456789999999 6999999999999999999999999999999986544332211000 0000111224688999999
Q ss_pred cCCCHHHHHHHHH
Q 017651 84 WSDDSSLQLEATT 96 (368)
Q Consensus 84 ~~~~~~~~~~a~~ 96 (368)
.|+|+..++.|+.
T Consensus 84 ~S~d~~~ql~Atq 96 (97)
T PF01749_consen 84 NSDDPEVQLEATQ 96 (97)
T ss_dssp TSSCHHHHHHHHH
T ss_pred CCCCHHHHHHhhC
Confidence 9999999999875
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-12 Score=114.87 Aligned_cols=270 Identities=16% Similarity=0.107 Sum_probs=184.3
Q ss_pred CCHHHHHHHHHHHHHhhcCC--CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651 86 DDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (368)
Q Consensus 86 ~~~~~~~~a~~~l~~l~s~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (368)
.+..+...+..++.+....+ ++.....-++.+++..|.+..++++ .++..++.++|+|+|.++.+.+..+.+.|+-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 34445556666666664221 1222333456788888888888887 79999999999999999999999999999988
Q ss_pred HHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhH----------------
Q 017651 164 IFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSM---------------- 219 (368)
Q Consensus 164 ~L~~lL~~-------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~---------------- 219 (368)
.+++.|+. .+.+....++..|.|..-++..++..+.+.|+++.|...+.-+ .+...
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88888764 2346777888999999999999999999999999887766311 11111
Q ss_pred ----------------------------HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CC-------HHHHHH
Q 017651 220 ----------------------------LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-ND-------EEVLTD 263 (368)
Q Consensus 220 ----------------------------~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-~d-------~~v~~~ 263 (368)
.+.+...+...+.++...-.....|.+..+.++++. .+ -.....
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 111122222222221111111113444444444432 11 122334
Q ss_pred HHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC--
Q 017651 264 ACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-- 340 (368)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~-- 340 (368)
++....-+..++ +..+.+...+ +++.+..++.+++......+..+|||++...+ .+..+++.|++..|+.+|...
T Consensus 293 ~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~ 370 (604)
T KOG4500|consen 293 IAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKD 370 (604)
T ss_pred hhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444555554 4446666666 89999999999999999999999999998665 677799999999999998642
Q ss_pred --CCccHHHHHHHHHHHHhc
Q 017651 341 --HKKSIKKEACWTISNITA 358 (368)
Q Consensus 341 --~~~~v~~~a~~~l~nl~~ 358 (368)
.+..++..++.+|.|++-
T Consensus 371 vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 371 VDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CCccchhHHHHHHHHHhccc
Confidence 156788889999999874
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.48 E-value=1.5e-11 Score=111.75 Aligned_cols=282 Identities=16% Similarity=0.156 Sum_probs=207.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
....++..|.++|..+...|+..+..+++.. ..........-+++.+...|++++....+.-|+.+|..+.. .++.+.
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRF 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHH
Confidence 3567778888889999999999999998754 22211111112455677777765446888889999999998 478888
Q ss_pred HHhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651 155 VVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
.+.+.++++.|+.+|+. .+..++..++.+++-++.+.+ ..+.....+.++.++.++....-+.+.+-++.+|.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 89999999999999976 256889999999999998765 456667788999999999888899999999999999998
Q ss_pred CCC----CCC--hhhhhchHHHHHHhhcC---CCHHHHHHHHHHHH-------HhhcC--------------C-------
Q 017651 233 GKP----QPP--FDQVRPALPALAQLVHS---NDEEVLTDACWALS-------YLSDG--------------T------- 275 (368)
Q Consensus 233 ~~~----~~~--~~~~~~~~~~L~~lL~~---~d~~v~~~a~~~l~-------~l~~~--------------~------- 275 (368)
... ... ...+...++.++..|.. .|+++..+.-..-- .+++. +
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 541 111 12233345555555543 36665444222211 11210 0
Q ss_pred --hHHHHHHHHc--CChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHH
Q 017651 276 --NDKIQAVIEA--GVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEAC 350 (368)
Q Consensus 276 --~~~~~~~~~~--~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~ 350 (368)
.+....+-+. .++..|+.+| .+.++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 1233344443 4578899999 466788899999999999999988888777889999999999999 999999999
Q ss_pred HHHHHHhcCC
Q 017651 351 WTISNITAGN 360 (368)
Q Consensus 351 ~~l~nl~~~~ 360 (368)
.|+.-+..++
T Consensus 418 ~avQklm~~~ 427 (429)
T cd00256 418 LAVQKLMVHN 427 (429)
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.43 E-value=6.1e-11 Score=120.30 Aligned_cols=235 Identities=19% Similarity=0.168 Sum_probs=151.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.|+..|.++++.++..|+..|.++.. .+.++.|+.+|.+++ +.+|..|+.+|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence 46889999999999999999999987732 235788999998887 8999999999988753211
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh------------hhHHH----HHhcCChHHHHHHhccccchh
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP------------RCRDL----VLSQGALIPLLAQLNERAKLS 218 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~------------~~~~~----i~~~~~i~~l~~~l~~~~~~~ 218 (368)
..+.|...|.++++.++..++.+|+.+....+ ..|.. +...+..+.|+..+ .+++..
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~ 757 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE 757 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence 12344455555555566555555554421110 01100 00111223444455 566666
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651 219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 298 (368)
++..++.+|..+....+ ..++.|..+++++|+.|+..++.+|+.+.... .+...+...|.++
T Consensus 758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~ 819 (897)
T PRK13800 758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS 819 (897)
T ss_pred HHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC
Confidence 77667766666654321 23566777777777888888888887775321 1124466677777
Q ss_pred CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017651 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 299 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
++.+|..|+.+|+.+... ..++.|..+|.++ ++.||+.|+++|+.+ .+++...
T Consensus 820 d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~a~ 872 (897)
T PRK13800 820 AWQVRQGAARALAGAAAD-----------VAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPAAR 872 (897)
T ss_pred ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHHHH
Confidence 788888888888776421 2357788888888 889999999999887 3444433
No 29
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.38 E-value=2.6e-11 Score=119.86 Aligned_cols=293 Identities=18% Similarity=0.187 Sum_probs=214.2
Q ss_pred hhhccHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHH----------HhhcC------CCC
Q 017651 71 TKLESLPAMVAGVWSD---DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV----------EFLMR------EDY 131 (368)
Q Consensus 71 ~~~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv----------~lL~~------~~~ 131 (368)
...+.++.|++.+... +.+.+..|-.+|.+++..+ .+....-.+..+++.|= .++.. +..
T Consensus 232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 3457899999999854 4577888888999998764 22211111122222221 12211 111
Q ss_pred HHHHH-HHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651 132 PQLQF-EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 132 ~~v~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
..-+. .|+..|..++. +++.+..+.+.|++..+-.|+.- .+..++..++.+|.||...+...+..+
T Consensus 311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 34555 67778888888 48999999999999988887752 235889999999999997665555544
Q ss_pred H-hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh--hchHHHHHHh-hcCCCHHHHHHHHHHHHHhhcC
Q 017651 199 L-SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV--RPALPALAQL-VHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 199 ~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~L~~l-L~~~d~~v~~~a~~~l~~l~~~ 274 (368)
. ..|++..++..| ....+++....+.+|.||+-.-.......+ .+.+-.|... ++...+..+..++.+|+||+.+
T Consensus 390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 4 568899999999 666778888999999999976433322222 3445555543 4555667888999999999988
Q ss_pred ChHHHHHHHHc-CChHHHHHhcCCC----CcchHHHHHHHHHHhh---cCChHHHHHHHHcCChHHHHHhhCCCCCccHH
Q 017651 275 TNDKIQAVIEA-GVCPRLVELLGHP----SPSVLIPALRTVGNIV---TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 346 (368)
Q Consensus 275 ~~~~~~~~~~~-~~~~~L~~lL~~~----~~~v~~~a~~~l~nl~---~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~ 346 (368)
..+....|..- |.+.+|+..|... ...+.+.|-++|-|+. +.++...+.+.+++.|..|++.|++. +..+.
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV 547 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV 547 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence 77776677664 8999999999654 3567788888888764 45667888899999999999999999 99999
Q ss_pred HHHHHHHHHHhcCCHHHhhhc
Q 017651 347 KEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 347 ~~a~~~l~nl~~~~~~~i~~v 367 (368)
-.+|.+|.||.+-+++.-+++
T Consensus 548 SNaCGTLWNLSAR~p~DQq~L 568 (2195)
T KOG2122|consen 548 SNACGTLWNLSARSPEDQQML 568 (2195)
T ss_pred ecchhhhhhhhcCCHHHHHHH
Confidence 999999999999888776654
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5.8e-12 Score=115.92 Aligned_cols=264 Identities=19% Similarity=0.227 Sum_probs=181.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HH-HH---hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EE-VI---QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~-~i---~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~ 148 (368)
+.+|.|.++|.+++...+.-|..+|.+++... ... +. .. -.-.+|.|+++.++++ |.+|..|+.|+.-+.-.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence 35899999999999888999999999996532 111 10 00 0125899999999998 99999999999887663
Q ss_pred CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHHhccccchhHHHHHHHH
Q 017651 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLNERAKLSMLRNATWT 226 (368)
Q Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~ 226 (368)
.++....-++ ..+..+..+-.+++++||.+.+.+|.-|....+. .+.. .++++.++..- ++.|+++.-.||..
T Consensus 205 ~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~t-qd~dE~VALEACEF 279 (885)
T KOG2023|consen 205 QTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRT-QDVDENVALEACEF 279 (885)
T ss_pred CcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHc-cCcchhHHHHHHHH
Confidence 3322222222 3567777777889999999999999999866543 2222 13455666655 77788999999999
Q ss_pred HHHhhcCCCCCCh---hhhhchHHHHHHhhcCCC----------------------------------------------
Q 017651 227 LSNFCRGKPQPPF---DQVRPALPALAQLVHSND---------------------------------------------- 257 (368)
Q Consensus 227 L~~l~~~~~~~~~---~~~~~~~~~L~~lL~~~d---------------------------------------------- 257 (368)
...++..+ .... ..+..++|.|+.-+..++
T Consensus 280 wla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 280 WLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 99999875 2211 223556676665332111
Q ss_pred ----------HHHHHHHHHHHHHhhcCChHHHHHHHHcCC----hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHH
Q 017651 258 ----------EEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC 323 (368)
Q Consensus 258 ----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 323 (368)
+.++...+.+|.-|+. +....+ +|.|-+.|.++++.+++.++.++|.|+.|+-..
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g--- 427 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG--- 427 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---
Confidence 1233333333333332 222233 455555667889999999999999999876432
Q ss_pred HHHc--CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 324 IITY--GALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 324 ~~~~--g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++.+ .++|.|+.+|.+. .+-||.-+||+|+.++.
T Consensus 428 ~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 428 FVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSK 463 (885)
T ss_pred cccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhh
Confidence 3332 4789999999999 99999999999999874
No 31
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-10 Score=100.16 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=155.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651 84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (368)
.+.+.+.+..|+..|..++. +-++...++..|+...++.++++++ +.+|..|+|+|+.++..||..+..+++.|+++
T Consensus 93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 45678889999999998874 3677788999999999999999998 89999999999999999999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651 164 IFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQ 241 (368)
Q Consensus 164 ~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 241 (368)
.|+..+.+ ++..++..|+++++++..+.+...+.+...++...|...+... .+..+++.++..+..|...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999986 4567789999999999999998999999999999999999543 688999999999999998763332222
Q ss_pred h-hchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651 242 V-RPALPALAQLVHSNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 242 ~-~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~ 273 (368)
. .++...+..+..+.+.++...++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 2 3444456666667778888888777766654
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.1e-10 Score=111.10 Aligned_cols=280 Identities=20% Similarity=0.195 Sum_probs=191.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++-|++..+|+++..|..|+..|..+...-.+.....+ ..+.+.|.+.+.+++.+ +|..|+++++.++...+..+.
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence 467778888899999999999999877543212222111 12467777888888855 999999999999875543333
Q ss_pred HHhhC-CChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHH
Q 017651 155 VVIDH-GAVPIFVKLL----ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLS 228 (368)
Q Consensus 155 ~~~~~-g~i~~L~~lL----~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~ 228 (368)
..-.. ..+|.++..+ ..++......++.+|..++...|.+-...+.. ++.-.+.+.... -+..++..|+.+|.
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 32221 3456555544 45666677788888888887665532222211 233333333211 14444444444444
Q ss_pred HhhcC------------------------------------------------------------CCCCChhhhhchHHH
Q 017651 229 NFCRG------------------------------------------------------------KPQPPFDQVRPALPA 248 (368)
Q Consensus 229 ~l~~~------------------------------------------------------------~~~~~~~~~~~~~~~ 248 (368)
.+++. -+.. .....+++.
T Consensus 275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~ 352 (1075)
T KOG2171|consen 275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEA 352 (1075)
T ss_pred HHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHH
Confidence 44333 1100 011234556
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651 249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG 328 (368)
Q Consensus 249 L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g 328 (368)
+-.+|++.++.-+..++.+|+.++.+..+.....+. .+++.++..|.+++|.||..||.++|.+++.-....+.-....
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 666778899999999999999999998877665443 6888999999999999999999999999987766677677778
Q ss_pred ChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651 329 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 329 ~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 361 (368)
+++.|+..+.+.+++.++..|+-++-|+..+++
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 899999999998889999999999999998543
No 33
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.3e-10 Score=100.77 Aligned_cols=184 Identities=18% Similarity=0.213 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l 211 (368)
++-+..|..-|..++. +-++...++..|+...++.++++++..+|+.|+|+++..+.++|..+..+++.|+++.|+..+
T Consensus 97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 7788889888988888 578889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651 212 NERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288 (368)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 288 (368)
..+++..++..|+++++.+.++.+. .......++...|.+.+++ .+...+..++..++++........+.+...++.
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 8777888999999999999999743 3333345678999999988 567889999999999998766665555555666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651 289 PRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
..+..+....+..+.+.++.++..+...
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 6677777777888888888888777653
No 34
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.32 E-value=4e-10 Score=99.24 Aligned_cols=281 Identities=13% Similarity=0.076 Sum_probs=199.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC------CCHHHHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE------DYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~------~~~~v~~~a~~~L~~l~~ 147 (368)
+.+..|.+...|++.++-.+..++|.+++..+ ++.+..+.+.|+-..+++.|+.. .+.+.-.-+...|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45777788888888999999999999998765 88889999999977777777641 224666777889999999
Q ss_pred CCCcchHHHhhCCChHHHHHhhCC--CCHHHH--------------------------------------------HHHH
Q 017651 148 GTSENTKVVIDHGAVPIFVKLLAS--PSDDVR--------------------------------------------EQAV 181 (368)
Q Consensus 148 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~--------------------------------------------~~a~ 181 (368)
++.+.+..+.+.|+++.|..++-- .+...- +.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999987766532 222222 3333
Q ss_pred HHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-------chhHHHHHHHHHHHhhcCCCCCChhhhhc-hHHHHHHhh
Q 017651 182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLV 253 (368)
Q Consensus 182 ~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~L~~lL 253 (368)
..|...+.++ ..+-.+.+.|.+..+++++.+.+ .......++....-+..++..-......+ ++..+..++
T Consensus 246 eila~~aend-~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAEND-LVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCc-ceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 3333333332 23334456666677777664322 12233344444444444432222222223 788889999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-----CCCcchHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIITYG 328 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g 328 (368)
.++|...+..+.-+|+|++..++.. -.+++.|++..|+..|. .++.+.+..++.++.|++---+ ....++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccc
Confidence 9999999999999999999985544 67889999999999983 2456788999999999976443 456788999
Q ss_pred ChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 329 ALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 329 ~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
+.+.++..++.. .|.+.-.-..++.-+..+
T Consensus 403 vteaIL~~lk~~-~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 403 VTEAILLQLKLA-SPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred hHHHHHHHHHhc-CCcchHHHHHHHHHHHhc
Confidence 999999999988 777776666666655443
No 35
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.32 E-value=4.8e-10 Score=98.68 Aligned_cols=281 Identities=16% Similarity=0.132 Sum_probs=204.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
....+.++..++..+...+.+.+.++.+.. +.........-....|-..+.+..+++...-|++||..+... ++.+..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 456777888888877777888888886643 222211111112334455555544468888899999999985 778888
Q ss_pred HhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 156 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
++..+++..++..+.+ .+..++.+.+.|++-|+.+.+.. +.+...+.|+.|..+++.+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888899999998843 45789999999999999886654 66678889999999998888999999999999999987
Q ss_pred CCCCCh------hhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHh-------hcC--------------C--------
Q 017651 234 KPQPPF------DQVRPALPALAQLVH---SNDEEVLTDACWALSYL-------SDG--------------T-------- 275 (368)
Q Consensus 234 ~~~~~~------~~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~~l-------~~~--------------~-------- 275 (368)
.+.... ..+.+-++..++.|. -+|+++..+.-..-..| ++. +
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 643222 122344455555553 34666655443333222 111 0
Q ss_pred -hHHHHHHHHc--CChHHHHHhcCC-CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHH
Q 017651 276 -NDKIQAVIEA--GVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW 351 (368)
Q Consensus 276 -~~~~~~~~~~--~~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~ 351 (368)
.+....+.+. .++..|+.+|.. .+|.+..-||.-||..+...|+....+.+.|+=+.++++|.++ +++||.+|..
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 1223333433 578889999954 4689999999999999999999999888999999999999999 9999999999
Q ss_pred HHHHHhcCC
Q 017651 352 TISNITAGN 360 (368)
Q Consensus 352 ~l~nl~~~~ 360 (368)
|+..+..++
T Consensus 432 avQ~lm~~~ 440 (442)
T KOG2759|consen 432 AVQKLMVHN 440 (442)
T ss_pred HHHHHHhhc
Confidence 998877654
No 36
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.4e-09 Score=97.11 Aligned_cols=278 Identities=16% Similarity=0.180 Sum_probs=192.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+.-|++.|..++.++.......|.++ |.- .++...+.+.|++..|++++...+ ++++..++..|.|++.+ ...+.
T Consensus 305 iV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~ 380 (791)
T KOG1222|consen 305 IVAMLVKALDRSNSSLLTLVIKFLKKL-SIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP 380 (791)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHh-hhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence 467889999999988888888888877 433 567778889999999999999998 99999999999999995 77889
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--------------------------------
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-------------------------------- 202 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~-------------------------------- 202 (368)
..+..|.+|.+..+|.++.. ...|+..|..++.++. ++..+....
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999986422 1122222222222211 111111111
Q ss_pred -----------------------------------------------ChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 017651 203 -----------------------------------------------ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK- 234 (368)
Q Consensus 203 -----------------------------------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~- 234 (368)
.+..|...+..+.++.+...+++++.||.-.+
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 12223333333445555666667777766432
Q ss_pred CCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHH
Q 017651 235 PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTV 310 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l 310 (368)
+-........++|.+-..|+.. ..+++-...-+++-++.. .+....+..+|+++.++++|+. .+.+.....+.+.
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 1112222357888888877653 345666677777777754 4455667778999999999954 4677788888888
Q ss_pred HHhhcCChHHHHHHHH-cCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651 311 GNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~-~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
..+..+.. ....++. ...-.++++++.+. +..+|+-+-.+|--++..+.+
T Consensus 617 ~Q~l~He~-tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 617 LQFLKHEL-TRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred HHHHHHHH-HHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhHH
Confidence 88887633 4444544 45667899999988 899999998898888765554
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=6.8e-10 Score=112.73 Aligned_cols=229 Identities=19% Similarity=0.179 Sum_probs=153.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE-- 151 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~-- 151 (368)
+.++.|+..|.++++.++..|+..|..+.... + ..+.|...|.+++ +.+|..|+.+|..+..++..
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--~---------~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~~~~~l 719 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL--P---------PAPALRDHLGSPD-PVVRAAALDVLRALRAGDAALF 719 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--C---------chHHHHHHhcCCC-HHHHHHHHHHHHhhccCCHHHH
Confidence 35788999999999999999999988774211 0 0123444444443 45555555444443211000
Q ss_pred ----------ch----HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch
Q 017651 152 ----------NT----KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL 217 (368)
Q Consensus 152 ----------~~----~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~ 217 (368)
.+ ..+...+..+.|..++.+++..|+..++.+|+.+....+ ..++.|..++ .++++
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll-~D~d~ 789 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALT-GDPDP 789 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHh-cCCCH
Confidence 00 000000122345556666666666666666666644322 1367788888 78889
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC
Q 017651 218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297 (368)
Q Consensus 218 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 297 (368)
.++..++.+|..+.... ...+.+...|.++++.|+..|+++|+.+... ..++.|+.+|.+
T Consensus 790 ~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D 849 (897)
T PRK13800 790 LVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTD 849 (897)
T ss_pred HHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcC
Confidence 99999999999885431 2345688888999999999999999887532 236889999999
Q ss_pred CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 298 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
+++.+|..|+++|+.+. +++. ..+.|...+++. +..||++|..+|..
T Consensus 850 ~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 850 PHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS-DADVRAYARRALAH 896 (897)
T ss_pred CCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence 99999999999999972 2332 356677888888 99999999999863
No 38
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.1e-09 Score=105.67 Aligned_cols=267 Identities=18% Similarity=0.233 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017651 89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (368)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (368)
..|+.|........+.++.|+-+ +|.+++.|-+ .--|..|+..|+..-.--+-.....+.-|++|++++|
T Consensus 451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL 520 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL 520 (1387)
T ss_pred HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 45666776666666666666665 5666666654 3458889999999887657777777888999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCCCChhhh-hch
Q 017651 169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQV-RPA 245 (368)
Q Consensus 169 L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~ 245 (368)
|+++-.+++...+++...|..-++.++..+++.++-..+++.|..++ +++-+..+++.|+.++++.+..+.... .++
T Consensus 521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l 600 (1387)
T KOG1517|consen 521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL 600 (1387)
T ss_pred hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence 99999999999999999997776888888888888888888885423 557788899999999998755444444 567
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC----ChHH
Q 017651 246 LPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDFQ 320 (368)
Q Consensus 246 ~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~~ 320 (368)
+...+..|.++ .+-++..+|-+|+.|=.+.++..=.-...+..+.|..+|+++-+++|..|+.+||.+..+ .+++
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 78888888775 577899999999999876655433345567899999999999999999999999999875 3444
Q ss_pred HHHH------------HHcCCh---HHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017651 321 TQCI------------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQV 366 (368)
Q Consensus 321 ~~~~------------~~~g~l---~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~ 366 (368)
...+ ++..+. ..++.+++++ .+-++++.+-+|+.++.|...++.-
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~ 740 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKV 740 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHH
Confidence 4333 222122 3677788888 9999999999999999998877654
No 39
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.20 E-value=1.5e-09 Score=100.48 Aligned_cols=279 Identities=13% Similarity=0.117 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHH---HhhcCCCCCch----HHHHhcCcHH--HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc----
Q 017651 86 DDSSLQLEATTQFR---KLLSIERSPPI----EEVIQSGVVP--RFVEFLMREDYPQLQFEAAWALTNIASGTSEN---- 152 (368)
Q Consensus 86 ~~~~~~~~a~~~l~---~l~s~~~~~~~----~~~i~~g~i~--~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~---- 152 (368)
.....+..|+.+++ +++..+ +... ....+.|+.+ .+-+++++++ +..+..++.++..+...+...
T Consensus 193 ~s~~~RlaaL~~~sr~~~iL~Nn-~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s~~~d~l~ 270 (678)
T KOG1293|consen 193 LSSKLRLAALLCLSRGDRILRNN-PLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKSFNYDPLP 270 (678)
T ss_pred hhHHHHHHHHHHhhccceeeecC-chhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhccccccccc
Confidence 35678888899998 666543 2221 2344667766 5667788887 788899999999988754110
Q ss_pred -hHHHhhCC----------------Ch-----HHH--------HHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 153 -TKVVIDHG----------------AV-----PIF--------VKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 153 -~~~~~~~g----------------~i-----~~L--------~~lL~~-----~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
...+.+.| ++ ... ..-+.. ...++...-+.+-..++...+.++..
T Consensus 271 ~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i 350 (678)
T KOG1293|consen 271 WWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLI 350 (678)
T ss_pred cceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHH
Confidence 00111111 10 000 000100 00111222333444445555555544
Q ss_pred HHhcCChHHH---------------------HHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcC
Q 017651 198 VLSQGALIPL---------------------LAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHS 255 (368)
Q Consensus 198 i~~~~~i~~l---------------------~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~lL~~ 255 (368)
++....++.- ...+....|..+...+|-++-++++.-..- .......+...|++++..
T Consensus 351 ~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d 430 (678)
T KOG1293|consen 351 LLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD 430 (678)
T ss_pred HhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC
Confidence 4432221111 011113346778888888888887754111 112224577889999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HH
Q 017651 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY-LL 334 (368)
Q Consensus 256 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~-l~ 334 (368)
++..|...++++|+|++..-.+....++..|+++.+...+.++++.++..++|++.++..++++..+......+-.. +.
T Consensus 431 p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~ 510 (678)
T KOG1293|consen 431 PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLIL 510 (678)
T ss_pred cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHH
Confidence 99999999999999999776666788999999999999999999999999999999999999877776665555444 45
Q ss_pred HhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651 335 GLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 335 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
.+..++ ++.|++.+.-.+.|++.++.+-++.+
T Consensus 511 ~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfl 542 (678)
T KOG1293|consen 511 DLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFL 542 (678)
T ss_pred HHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 566666 99999999999999999988887765
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.19 E-value=5.3e-10 Score=107.95 Aligned_cols=254 Identities=20% Similarity=0.217 Sum_probs=145.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.+++.+.+++...+.-+.-.+..+... ++..-.+ +++.+.+-|.+++ +.++..|+++|++++. ++...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence 567777777777777777777777666542 2221112 4666777777777 7888888888888774 33322
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
. .++.+..++.++++.||..|+.++..+....|.. +... .++.+..++ .++++.++..|+.++..+ ...
T Consensus 114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence 2 3567777777888888888888888887665542 2222 466777777 677777888888777777 221
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
+..........++.|..++...++.++..++.++..++...+..... ..+++.+..++.+.++.+...|+.++..+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11101333445555555556667777777777777766554433211 223444444444444445555555544444
Q ss_pred cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
...+ .-..+++.|..++.++ ++++|-.++.+|..++.
T Consensus 260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCC
T ss_pred cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhc
Confidence 3222 1113344444455444 44455555555555444
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.16 E-value=8.6e-10 Score=106.53 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=177.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+..+.+.+.++++..+-.|++++.++.. .+-.+ .+++.+.+++.+++ |.+|..|+-++..+...+++...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~-----~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAE-----PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHH-----HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhh-----HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 46777888889999999999999998852 11222 25888999999998 99999999999999986555322
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHHhh
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~ 231 (368)
.. .++.+..+|.++++.++..|+.++..+ ...+.... ..++.+...|. ...++-.+..++.++..++
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 22 589999999999999999999999999 22221101 23444444432 6678888888888888777
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (368)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (368)
...+..... ..+++.+..++++.++.|...++.++.++..... .-..+++.+..+|.++++.++..++..|.
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred cCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 553211100 4577888888888888899999988888876533 22346788888888888889999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhC-CCCCccHHHHHHHHHHHHhc
Q 017651 312 NIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 312 nl~~~~~~~~~~~~~~g~l~~l~~ll~-~~~~~~v~~~a~~~l~nl~~ 358 (368)
.++...+.. +. + ....+..+. ++ +..+|+.+.-+|.+++.
T Consensus 293 ~l~~~~~~~----v~-~-~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 293 QLAQSNPPA----VF-N-QSLILFFLLYDD-DPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHCCHCHHH----HG-T-HHHHHHHHHCSS-SHHHHHHHHHHHHHH--
T ss_pred Hhhcccchh----hh-h-hhhhhheecCCC-ChhHHHHHHHHHhhccc
Confidence 988766222 22 2 222233444 55 78888888888888874
No 42
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.15 E-value=9.5e-09 Score=95.24 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=93.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVI 157 (368)
Q Consensus 79 l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~ 157 (368)
++..+.+.+++....|..-..+++.+. +++...+++.|.++.++.++...+ .++.+.+.+.++...+.+.......++
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 344555778888888998888888775 566668999999999999997654 267777777788888888888889999
Q ss_pred hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCh
Q 017651 158 DHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSP 192 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~ 192 (368)
+.+.++.|+++|.+++ ..+++.++.++.+|...++
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 9999999999999988 8999999999999986654
No 43
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.4e-09 Score=102.04 Aligned_cols=278 Identities=19% Similarity=0.197 Sum_probs=196.4
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 76 LPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 76 i~~l~~~l~~--~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+..++..... ++..+++.|+.+|.+-+...+...-.+.-..-++...++...+++ .+++..|..||..|.+-.-+.-
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444442 456788888888887664331111112222334566677777777 8999999999999998767777
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh----H-----------HHH---HhcCChHHHHHHhcc-c
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC----R-----------DLV---LSQGALIPLLAQLNE-R 214 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~----~-----------~~i---~~~~~i~~l~~~l~~-~ 214 (368)
...+....++.-+.-+++++++|.-+++...+++|...-.. . ..+ .-.+.+|.|+++|.+ +
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 77777677788888889999999999999999988432110 0 000 112467888888854 2
Q ss_pred -----cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 017651 215 -----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289 (368)
Q Consensus 215 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 289 (368)
++...-..+..||.-+++...+ ..+..++|.+-+-++++|+.-+..+.-+++.+..+++.....-+-.+.++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 1334555666666666654322 12235777777788899999999999999999999876666666678999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC-IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~-~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
.++.++.+++-.++..+.|++|.++...++.+.. ....+.++.++.-|.+ .|.+...+||++.+++.+
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEA 478 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHH
Confidence 9999999888889999999999999877643332 2233567777777765 589999999999999954
No 44
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.13 E-value=2.3e-09 Score=95.88 Aligned_cols=223 Identities=19% Similarity=0.254 Sum_probs=155.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHh------cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ------SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT 149 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~------~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~ 149 (368)
+-.+++.+ +.+.+.....+..+..+++.. +...+.+.. ......|+.++.++| ..++..|+.+|+.+....
T Consensus 60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp --HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcC
Confidence 44555555 677888889999999998865 344444443 236788899888887 899999999999998865
Q ss_pred CcchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh------ccccchhH
Q 017651 150 SENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL------NERAKLSM 219 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l------~~~~~~~~ 219 (368)
+....... .+.++.+++++.+ ++.+++..|+.+|.++... +.+|..+.+.|+++.+..++ ....+.++
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 55444322 3566777777664 4567789999999999966 57899999999999999999 45568899
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhcCC
Q 017651 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLGH 297 (368)
Q Consensus 220 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~ 297 (368)
+..++.|++.|+..++........+++|.|+++++.. .++|..-++.++.|++..+.+ ....++..|+++.+-.+...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 9999999999998754333333456999999999754 689999999999999987654 66778888877776666543
Q ss_pred --CCcchH
Q 017651 298 --PSPSVL 303 (368)
Q Consensus 298 --~~~~v~ 303 (368)
.|+++.
T Consensus 295 k~~Dedl~ 302 (312)
T PF03224_consen 295 KWSDEDLT 302 (312)
T ss_dssp --SSHHHH
T ss_pred CCCCHHHH
Confidence 344443
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5.8e-08 Score=91.75 Aligned_cols=284 Identities=19% Similarity=0.221 Sum_probs=214.4
Q ss_pred ccHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCC-
Q 017651 74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTS- 150 (368)
Q Consensus 74 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~- 150 (368)
+.|+.|+.-+.+.. .+.+..|++.|..+.. .. +..+-..+++.|++.|..+ .++++...++..+.++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kY-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KY-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HH-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57999999998655 7889999999987743 22 3334444588999999753 348999999999999887442
Q ss_pred -----cch----------HHHh-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhc-CChHHHHHHhc
Q 017651 151 -----ENT----------KVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQ-GALIPLLAQLN 212 (368)
Q Consensus 151 -----~~~----------~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~~i~~~-~~i~~l~~~l~ 212 (368)
+.+ +.++ ..+.|..|+.++...+-.||..++..|.++... .++.++.++.. -+|..++.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 111 2233 457899999999999999999999999999754 45677776654 4799999999
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCC---C-HHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 017651 213 ERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSN---D-EEVLTDACWALSYLSDGTNDKIQAVIEAGV 287 (368)
Q Consensus 213 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 287 (368)
.+..+.++-.++..|..|.++.+.... ...++++..|..++... | .-|..+++..+.||...+......+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 777788888999999999998754443 33478899999998643 3 368899999999999988888889999999
Q ss_pred hHHHHHhcCCC---Cc-----c-----hHHHHHHHHHHhhcC-Ch----HHH-HHHHHcCChHHHHHhhCCCC-CccHHH
Q 017651 288 CPRLVELLGHP---SP-----S-----VLIPALRTVGNIVTG-DD----FQT-QCIITYGALPYLLGLLTHSH-KKSIKK 347 (368)
Q Consensus 288 ~~~L~~lL~~~---~~-----~-----v~~~a~~~l~nl~~~-~~----~~~-~~~~~~g~l~~l~~ll~~~~-~~~v~~ 347 (368)
++.|..+|.-. +. . -...++.++..++.- +. .+. ..+...+++..|..++-++. ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 99999888432 21 1 124466666666542 21 233 45667799999999888773 568999
Q ss_pred HHHHHHHHHhcCCHHH
Q 017651 348 EACWTISNITAGNRDQ 363 (368)
Q Consensus 348 ~a~~~l~nl~~~~~~~ 363 (368)
++.-+++++..|+...
T Consensus 336 esiitvAevVRgn~~n 351 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARN 351 (970)
T ss_pred HHHHHHHHHHHhchHH
Confidence 9999999999876543
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=99.12 E-value=7.5e-08 Score=94.33 Aligned_cols=262 Identities=15% Similarity=0.104 Sum_probs=186.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.+++.+.+++.+.+.-....+.+++.. .+..-.+ .++.|.+-+.+++ |.+|-.|++.+++|-. ++...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 578889999999999998888888877543 2222222 3788888889888 9999999999998766 22222
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
-.++.+.+.+.+.++.||..|+.++.++...+|+ .+...|.++.|..+| .+.++.++.+|+.+|..++...
T Consensus 140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 2456778888999999999999999999877663 455667888899988 8899999999999999998765
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
+. ........+..|+..|...++..+...+.+|......++... ..++..+...|.+.++.|.-.|++++.++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 244445666677777777778888888888866543222221 246778888899999999999999999987
Q ss_pred cCC-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651 315 TGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 315 ~~~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
... +.....+.. .+-..++.++ ++ +++++--+...|.-++...|..
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~l 331 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNL 331 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHH
Confidence 653 222222211 1223444443 34 5666666666665555554443
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=99.12 E-value=1e-07 Score=93.47 Aligned_cols=254 Identities=16% Similarity=0.121 Sum_probs=186.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+..|.+.|++.+...+..|++.+-.+.... . ... .+.+..++++.+++ ..++.-+.-.+.+++..+++..
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~-DvS-----~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela- 103 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-R-DVS-----YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA- 103 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-C-Cch-----HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH-
Confidence 4567778888888888888887665554432 2 121 24677788888888 8999999999999988655432
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
++ ++..|.+=+.++++.+|-.|+.+|++|-.. ...+. .++++.+.+ .+.++-|++.|+.++..+.+..
T Consensus 104 -lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 104 -LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred -HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 22 467888888899999999999999998543 22222 456677777 7889999999999999998765
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
|. .....++++.|.++|.+.|+.|+..|+.+|..+....++... ...+.+..++..|..-++-.+...+.++....
T Consensus 172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 43 222346788999999999999999999999999866544332 23445677777776666667777777776543
Q ss_pred cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
..++... ..++..+...|++. ++.|.-+|+.++.++...
T Consensus 248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASR 286 (746)
T ss_pred CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCc
Confidence 3322222 24677788889998 899999999999998853
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1e-08 Score=97.38 Aligned_cols=242 Identities=18% Similarity=0.171 Sum_probs=189.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
+..|++=|....++..|.+|+.-|.. |+-++++....+.-.-.+|.|+.+|+. .+.++.-.|++||.+|+.-.|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45555556555347888888877766 444666665555555689999999997 5689999999999999998888888
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-C
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-T 275 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~ 275 (368)
.+++.++||.|+..|..-...++.+.++.+|-.|++..+.. ..-.|.+...+.+|.--...++..|+.+.+|+|.. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A--iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA--ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999877778899999999999999874432 23357777777777666678999999999999965 3
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhhCCCC---CccHHHHH
Q 017651 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG---DDFQTQCIITYGALPYLLGLLTHSH---KKSIKKEA 349 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~---~~~~~~~~~~~g~l~~l~~ll~~~~---~~~v~~~a 349 (368)
++....+++ .+|.|..+|...+....+.++-++..++.+ .++..+.+..+|++....+++.-.+ +..+.-..
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 444466665 599999999999999999999999998753 4566777888999999999987652 34566777
Q ss_pred HHHHHHHhcCCHHHh
Q 017651 350 CWTISNITAGNRDQI 364 (368)
Q Consensus 350 ~~~l~nl~~~~~~~i 364 (368)
+..++-+++|++.-.
T Consensus 405 Irmls~msS~~pl~~ 419 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLF 419 (1051)
T ss_pred HHHHHHHccCChHHH
Confidence 888888888877544
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.7e-08 Score=96.93 Aligned_cols=277 Identities=16% Similarity=0.155 Sum_probs=187.4
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 77 PAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 77 ~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
..++..+.+ ..+.++.+-+..+..+++..-+. --.++++.|++..++++ +..|+-|..+|+.+...-...-..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 455555554 44677888788888887654222 22456888899999998 899999999999988743322221
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHH
Q 017651 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS---PRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSN 229 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~---~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~ 229 (368)
.+. ...+.|.+.+.+++..|+..++.+++.++... +..++.+.. .+|.++..+. ..++.+....+..+|..
T Consensus 156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 111 24566677777777779999999999998544 233333333 5676776663 34566667778888888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChHHHH---------------------------
Q 017651 230 FCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ--------------------------- 280 (368)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~~~~~--------------------------- 280 (368)
|....|..-...+..++.....+..+. ++.+|..|+.+|..++...+...+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 887755443344445555555555444 467777777777666543111100
Q ss_pred ------------------HHHH-----cC---C----hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651 281 ------------------AVIE-----AG---V----CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL 330 (368)
Q Consensus 281 ------------------~~~~-----~~---~----~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l 330 (368)
..++ -| + ++.+-.+|.++++.-|..++.+|+.++.|+.+.....++ .++
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il 391 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KIL 391 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHH
Confidence 0000 01 2 344455567888899999999999999999987776555 789
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017651 331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 331 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
+.++..|+++ ++.||-.||.+++-++..=+..+
T Consensus 392 ~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 392 PIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHH
Confidence 9999999999 99999999999999997544433
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.07 E-value=2.3e-08 Score=91.18 Aligned_cols=234 Identities=16% Similarity=0.175 Sum_probs=167.5
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 78 AMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 78 ~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
.+...++++ +...+..|+.++..++.. .+.+..+.+.++++.|+++|+... ..+++++++.|++-++.. ++....
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~--~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~ 223 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQMLLRV--DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEV 223 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCC--chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHh
Confidence 445555543 466778888999888864 456666778889999999998643 369999999999999994 555666
Q ss_pred HhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------hhhHHHHHhcCChHHHHHHhccc--cchhHHHHHHHH
Q 017651 156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS------PRCRDLVLSQGALIPLLAQLNER--AKLSMLRNATWT 226 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~------~~~~~~i~~~~~i~~l~~~l~~~--~~~~~~~~a~~~ 226 (368)
....+.|+.++.+++. ....+.+.++.+|.|+...+ ..+...++..| +++++..|... .|+++....-..
T Consensus 224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~~L 302 (429)
T cd00256 224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLKFL 302 (429)
T ss_pred hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 6678999999999986 56789999999999998632 22344556665 45666666432 355544332221
Q ss_pred HH-------Hhh--------------cCCCCCC-hhh-----------hhchHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 017651 227 LS-------NFC--------------RGKPQPP-FDQ-----------VRPALPALAQLVH-SNDEEVLTDACWALSYLS 272 (368)
Q Consensus 227 L~-------~l~--------------~~~~~~~-~~~-----------~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~ 272 (368)
-. .++ ++.|.-. ..+ ...++..|+++|. ++|+.+..-||.=|+.++
T Consensus 303 ~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~v 382 (429)
T cd00256 303 TEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYV 382 (429)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence 11 111 1111111 000 1246678888984 568899999999999999
Q ss_pred cCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651 273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
...+.....+-+-|+=..+++++.+++++++..|+.+++.+..
T Consensus 383 r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 383 RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8877776666677999999999999999999999999998754
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=5.6e-09 Score=93.40 Aligned_cols=232 Identities=16% Similarity=0.185 Sum_probs=160.2
Q ss_pred cHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCCcchHHHhh------CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 017651 118 VVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSENTKVVID------HGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190 (368)
Q Consensus 118 ~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~ 190 (368)
+...++.+|+.- .++++....+..+..+..+.+...+.+.. .....++++++..++..++..|+..|+.++..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 455666666654 44899999999999999988877776665 23678889999999999999999999999877
Q ss_pred ChhhHHHHHhcCChHHHHHHhcc---ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-----c--CCCHHH
Q 017651 191 SPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-----H--SNDEEV 260 (368)
Q Consensus 191 ~~~~~~~i~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-----~--~~d~~v 260 (368)
.+....... .+.++.+++.+.. .++.+.+..++.+|.+|.+.++........++++.+..++ . ..+..+
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 654322211 3467777777743 3456777999999999998764444444478999999998 2 235788
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhC
Q 017651 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLT 338 (368)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~l~~ll~ 338 (368)
+.+++.+++-|+.. ++....+.+.++++.++.+++ +....+..-++.++-|++..... ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 99999999999976 555677888899999999994 45678889999999999987664 6666778787777766665
Q ss_pred CCC-CccHHHHHHH
Q 017651 339 HSH-KKSIKKEACW 351 (368)
Q Consensus 339 ~~~-~~~v~~~a~~ 351 (368)
... ++++....-+
T Consensus 294 rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 294 RKWSDEDLTEDLEF 307 (312)
T ss_dssp S--SSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 432 5666655444
No 52
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.2e-08 Score=88.66 Aligned_cols=268 Identities=19% Similarity=0.129 Sum_probs=193.8
Q ss_pred HHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 76 LPAMVAGVW---SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 76 i~~l~~~l~---~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
+..+.+.++ .....+...|+..|.+++.. ...-..+...+++..|++.|..++ .++.......|..++- ..++
T Consensus 262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eN 337 (791)
T KOG1222|consen 262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDEN 337 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccc
Confidence 445555444 23455666677777777632 233345778999999999999988 7888888899998887 4678
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
+....+.|++..|++++...+++++...+..+.|++.++ ..|..++..|.+|.+..++..+.... .|+..++.++.
T Consensus 338 K~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~ 413 (791)
T KOG1222|consen 338 KIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSC 413 (791)
T ss_pred hHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcccch---hhhhhhhhhcc
Confidence 888999999999999999999999999999999999887 47888999999999999994443333 46667777777
Q ss_pred CCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-cCCCCcchHHHHHHHH
Q 017651 233 GKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l 310 (368)
++..........+++.+.+.+ ...+.+|-...+..--|+|... ...+.+++...+..|+.. +++.++- ....+
T Consensus 414 dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~l----LmK~v 488 (791)
T KOG1222|consen 414 DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLL----LMKVV 488 (791)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchH----HHHHH
Confidence 765555566678888877655 4445666555555555777542 233556666677777765 4555442 34567
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.|++.+.......+++ .+.-|...++..+++...-++..+++|++-
T Consensus 489 RniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 489 RNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred HHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 7887766543344444 456677777766577899999999999986
No 53
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.4e-08 Score=94.22 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=124.0
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID----HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~ 192 (368)
.++|.|+++|.+++ ....+-|..+|..|+.++.+..+.-.. .-.+|.++++.+++++.+|..|+.++..+.-..+
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 46899999999998 688999999999999976655443111 1357999999999999999999999998876554
Q ss_pred hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
..-..-++ .+++.+..+- .+.+++++.++|.++..|....+..-.....++++.++...++.|++|...||.....++
T Consensus 207 qal~~~iD-~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHID-KFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHH-HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 32111111 1344444444 788999999999999999998877777777889999999999999999999999999999
Q ss_pred cCC
Q 017651 273 DGT 275 (368)
Q Consensus 273 ~~~ 275 (368)
..+
T Consensus 285 eqp 287 (885)
T KOG2023|consen 285 EQP 287 (885)
T ss_pred cCc
Confidence 875
No 54
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=3.5e-08 Score=95.76 Aligned_cols=253 Identities=16% Similarity=0.195 Sum_probs=197.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.+|.+++.|-|+- -++.|+..|.+++... ...+..-..-|+.|.+++||.++. .+++..-+.+.+.|-.-++.++
T Consensus 472 eQLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 34566666555433 4667888888888765 777788888999999999999998 8999999999999888778999
Q ss_pred HHHhhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651 154 KVVIDHGAVPIFVKLLAS-P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~-~--~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
..+++.++-.++++.|.. + +++-+..|+++|+.|..+-+-.+....+.+.+...+..|..++.+-++.-+|-||..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 999998888888888876 2 3588999999999999988888888999999999999995545677888899999999
Q ss_pred hcCCCCCChhhh-hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC----ChHHHHHH------------HHcCCh---HH
Q 017651 231 CRGKPQPPFDQV-RPALPALAQLVHSNDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PR 290 (368)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~~---~~ 290 (368)
-.+.+.....-. .+....|..+|.++-++|+..|..+|+.+..+ .++..... ++.-+. -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 988765555443 56788899999999999999999999999875 23322222 222222 25
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL 330 (368)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l 330 (368)
++.+++..++-++....-++..++.+.......+.-...+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~ 747 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL 747 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence 6667788889999999999999988776655544433333
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.91 E-value=1.9e-07 Score=82.66 Aligned_cols=236 Identities=14% Similarity=0.169 Sum_probs=171.1
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 77 PAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 77 ~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
..+...+++ .+.+....|+++|.-++.. ++.+..++..+++..++..+ ++...-++|++.+.|++-++. ++...+
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae 235 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAE 235 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHH
Confidence 334445554 5566777888899988764 56666788888899999888 443347999999999999998 577777
Q ss_pred HHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh------hhHHHHHhcCChHHHHHHhcc--ccchhHHHHHHH
Q 017651 155 VVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSP------RCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATW 225 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~------~~~~~i~~~~~i~~l~~~l~~--~~~~~~~~~a~~ 225 (368)
.+...+.|+.|..++++ ....|.+.++.++.|+....+ .....++.. .+++-++.|.. .+|+++....-.
T Consensus 236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEF 314 (442)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHH
Confidence 77777899999999986 457888999999999997764 222344444 45666666643 235554443322
Q ss_pred HHHHh-------h--------------cCCCCCChh-h-----------hhchHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 017651 226 TLSNF-------C--------------RGKPQPPFD-Q-----------VRPALPALAQLVHSN-DEEVLTDACWALSYL 271 (368)
Q Consensus 226 ~L~~l-------~--------------~~~~~~~~~-~-----------~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l 271 (368)
.-..| + .+.|.-... + ...++..|+++|+++ ||.+..-||.=|+..
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 22111 1 111111000 0 125778899999765 588999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651 272 SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
....++....+.+.|+=..+++++++++++++-+|+.++..+..+
T Consensus 395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 999888888888899999999999999999999999999887654
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.7e-06 Score=82.13 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=213.3
Q ss_pred ccHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCC------CCc---------hHHHH-hcCcHHHHHHhhcCCCCHHHH
Q 017651 74 ESLPAMVAGVWS--DDSSLQLEATTQFRKLLSIER------SPP---------IEEVI-QSGVVPRFVEFLMREDYPQLQ 135 (368)
Q Consensus 74 ~~i~~l~~~l~~--~~~~~~~~a~~~l~~l~s~~~------~~~---------~~~~i-~~g~i~~Lv~lL~~~~~~~v~ 135 (368)
.+++.++..|+. .|++....++..+..+++.++ ++. .+.++ ..+.|..|+.++...+ -.||
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D-F~VR 139 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD-FHVR 139 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc-hhhh
Confidence 368899999985 578888999999999988652 111 12233 5688999999999888 7999
Q ss_pred HHHHHHHHHHhcC-CCcchHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc
Q 017651 136 FEAAWALTNIASG-TSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 213 (368)
Q Consensus 136 ~~a~~~L~~l~~~-~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~ 213 (368)
..++..|+++-+. ..+.++.++. .-+|..++.+|.+....||..++..|..+..+++..+..+.-.+++..|+.++..
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999997763 3455555554 5689999999999999999999999999999999999988888899999999965
Q ss_pred cc--ch-hHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcC---CCHH----------HHHHHHHHHHHhhcCC-
Q 017651 214 RA--KL-SMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHS---NDEE----------VLTDACWALSYLSDGT- 275 (368)
Q Consensus 214 ~~--~~-~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~---~d~~----------v~~~a~~~l~~l~~~~- 275 (368)
.+ |. -+...++..+-||..+. .+..+....+.+|.|.++|.. .|.+ -...++.++..++.-.
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 44 33 46788889999999887 455555557899999988753 2311 2345666666666321
Q ss_pred h-----HHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHHHHHHHHc----------CChHHHHHhhC
Q 017651 276 N-----DKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITY----------GALPYLLGLLT 338 (368)
Q Consensus 276 ~-----~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~----------g~l~~l~~ll~ 338 (368)
. .....+.+++++..|..++-++ ..+++..++.++++++.++......+.+. -++-.++.+..
T Consensus 300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~n 379 (970)
T KOG0946|consen 300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFN 379 (970)
T ss_pred cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHh
Confidence 1 2224677789999999998776 35789999999999999998777666543 12223444445
Q ss_pred CCCCccHHHHHHHHHHHHhcCC
Q 017651 339 HSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 339 ~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
+.+.+.+|-.+.+++-.+...|
T Consensus 380 e~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 380 EKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred ccCCchHHHHHHHHHHHHHhcc
Confidence 5546788888888888777644
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.2e-07 Score=89.34 Aligned_cols=281 Identities=17% Similarity=0.211 Sum_probs=184.7
Q ss_pred HHHHHHhhcCCCHH-HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCC-cc
Q 017651 76 LPAMVAGVWSDDSS-LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTS-EN 152 (368)
Q Consensus 76 i~~l~~~l~~~~~~-~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~-~~ 152 (368)
|+.++.....+.+. .+..++.++..++..- .+..-.--...++-.+++-.... .+..+|..|..+|.|--.... .+
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555444 7778888998885432 22211111344566666666542 236899999999998544211 11
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
....-.+-++...+..-.+++.+++..|+.||..|..-.-++-..-+....+..-+..+ .++++++.-.+....+++|.
T Consensus 210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence 12222233567777778889999999999999999754322212222222344445556 57888888888888887775
Q ss_pred CCCC-------------C--Ch----hhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651 233 GKPQ-------------P--PF----DQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (368)
Q Consensus 233 ~~~~-------------~--~~----~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 286 (368)
..-. + .. .....++|.|+++|.. +|+.....|-.||.-++....+. ++. -
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~ 364 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-H 364 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-h
Confidence 4211 1 11 1124678888888853 23455666666666665332221 222 3
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
+++.+-+.+.++++.-+..|..++|.+..+.+..+..-+..+++|.++.++.++ .-.++..++|+++.++.+.++-
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhh
Confidence 456666677899999999999999999999987777677779999999999988 8889999999999999866543
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.87 E-value=1.3e-07 Score=84.71 Aligned_cols=265 Identities=15% Similarity=0.100 Sum_probs=177.1
Q ss_pred ccHHHHHHhhcCCCHH--HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651 74 ESLPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~--~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
+.+..|++++.+++-+ ++.+|.+.|..+++. ++.+.+..-| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 4688999999988754 499999999999874 5566666655 444444444444478999999999999999999
Q ss_pred chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651 152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
....++..|+++.++...+..++.+..+|+.+|+|++-+. ...+..+++..+-+-|..+- .+.|+-++.++|-+...|
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999999888888999999999999998553 45667777777766666665 555788888999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCCHHH-HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651 231 CRGKPQPPFDQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 309 (368)
+..+.........+.+...-.++.+-||.- ..++ ...+.+ .....++.|+.+|.+..-+.+.-+..-
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~----hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~ 402 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA----HDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFY 402 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh----hhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHH
Confidence 987643333333344444444444444321 1111 011111 112357889999987655544444333
Q ss_pred HHHhhcC-C-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHH
Q 017651 310 VGNIVTG-D-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (368)
Q Consensus 310 l~nl~~~-~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl 356 (368)
++.=+.- + ....+.+-+-|.+..|-.+.+++ +..-.+-|-.+|.-|
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 3322221 1 12233344569999999999877 554444444444443
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.70 E-value=1.9e-06 Score=79.10 Aligned_cols=274 Identities=16% Similarity=0.109 Sum_probs=176.4
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCc--HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 77 PAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGV--VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 77 ~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~--i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
..++...-.+ .......++..+.+.+... .| ...+-.++. +....--++...+..+|..|+.+|.+-... .+
T Consensus 136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~ 210 (858)
T COG5215 136 EEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQ 210 (858)
T ss_pred HHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HH
Confidence 3444444433 3567778888888887654 23 222223332 233334455544478999999999883221 11
Q ss_pred HHHhh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651 154 KVVID----HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 154 ~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
..+-. +-.+...+..-+.++.+++..+..||..|..-.-.+-...++. .+-.+.....++++.++...+....+.
T Consensus 211 ~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavEfWst 289 (858)
T COG5215 211 GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVEFWST 289 (858)
T ss_pred HhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 11111 1234555666677899999999999999874322222233333 334444443488899999888888877
Q ss_pred hhcCCCCCCh-----------------hhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651 230 FCRGKPQPPF-----------------DQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (368)
Q Consensus 230 l~~~~~~~~~-----------------~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 285 (368)
+|........ .....++|.|+.+|.. +|+.+-..|..||--.+....+ .++..
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~p 366 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMRP 366 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHHH
Confidence 8765311100 1134588999999954 3456666677777666643222 23332
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 286 ~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 361 (368)
++..+-+-+.++++.-++.|+.++|.+..+..+.+-.-+-...+|.+...+.++ .-.++..++|+++.|+..-+
T Consensus 367 -Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 367 -VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred -HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHH
Confidence 455555667889999999999999999999887666666668899999999877 88899999999999986433
No 60
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1e-05 Score=68.98 Aligned_cols=269 Identities=16% Similarity=0.234 Sum_probs=174.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+..++.++.+.+|.++..|+..+..+... ..+.+. +.-.++.+.+++...+ + -..|+.+|.|++. ....+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence 56789999999999999999888877653 222222 2345788999998876 4 6789999999999 46777
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHHhcc-ccc-hhHHHHHHHH
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAQLNE-RAK-LSMLRNATWT 226 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~-----~~i~~l~~~l~~-~~~-~~~~~~a~~~ 226 (368)
+.++.. .+..++..+.++...+.+..+.+|+|++.+...+....... .++..+...+.. +.+ ..-..+.+..
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 777776 77888888888878889999999999999876665544322 133333333322 222 1224567788
Q ss_pred HHHhhcCCCCCChhhhhchHH--HHHHhhcCCCHHHH-HHHHHHHHHhhcCChHHHHHHHHc--CChHHHH---------
Q 017651 227 LSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDEEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRLV--------- 292 (368)
Q Consensus 227 L~~l~~~~~~~~~~~~~~~~~--~L~~lL~~~d~~v~-~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~L~--------- 292 (368)
+.||++.............+| .+..+-+ .+..++ .-.+++|.|+|.....+ ..+++. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence 889888753333333222222 3444433 455554 45777888887654333 222221 2233222
Q ss_pred ------------HhcC-----CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 293 ------------ELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 293 ------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
++|. .+++.++.--+.+|--+|+... .++.+.+.|+.+.+-.+=+..++++++ +||.-+.+
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq 311 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ 311 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence 3332 2467899999999999987544 778888888888777776666345554 55555555
Q ss_pred Hh
Q 017651 356 IT 357 (368)
Q Consensus 356 l~ 357 (368)
+.
T Consensus 312 ~L 313 (353)
T KOG2973|consen 312 ML 313 (353)
T ss_pred HH
Confidence 43
No 61
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=7e-06 Score=77.37 Aligned_cols=219 Identities=17% Similarity=0.195 Sum_probs=164.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
-+.++.+|.+.-+.++..|+..+.+++-.. ++... ..+|.|++-|.++| |.|+..|+.++..++..+|.+.-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence 467888888989999999998888887554 22222 24899999999999 99999999999999998886532
Q ss_pred HhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh--hc
Q 017651 156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF--CR 232 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l--~~ 232 (368)
..-|.|..+|-. .+.=+....+..+++|+.-.|.... ..+++|.+++....-.++...+..++... +.
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 245788887764 4455666788889999877765433 36899999995544566666666665433 32
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
+- ........-++..|-.++.++|+.+..-++-+++.+....+..++.. -..+++.|.+.++.+|..|+..+.-
T Consensus 289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence 21 12333445678888888999999999999999999997766654433 4568899999999999999999999
Q ss_pred hhcCC
Q 017651 313 IVTGD 317 (368)
Q Consensus 313 l~~~~ 317 (368)
++...
T Consensus 363 mVskk 367 (877)
T KOG1059|consen 363 MVSKK 367 (877)
T ss_pred Hhhhh
Confidence 88654
No 62
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.66 E-value=1.2e-05 Score=73.14 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=185.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
++.+..++-+++.+++-.|.+.+|.++.. ......+.+.++--.++.-|..++ +..-|.+|++.+..+..-. +..+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~ 103 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK 103 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence 34444455566699999999999999874 466777888886666677776543 3456889999888877631 1111
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.+..|++..++.+..++++.++..|+.+|+.++..+|+ .+...|++..+++.+.. +..++...++.++..+...+
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence 23457889999999999999999999999999998874 68899999999999944 54558888999999998875
Q ss_pred CCCChhhh----hchHHHHHHhh---cCCCH--HHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcCCCCcchHH
Q 017651 235 PQPPFDQV----RPALPALAQLV---HSNDE--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGHPSPSVLI 304 (368)
Q Consensus 235 ~~~~~~~~----~~~~~~L~~lL---~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~v~~ 304 (368)
....+... ..++..+.+.- ..++. +-...+..++..+...-++..-.-.+. ..+..|+..|..+.+.+|.
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence 33332222 22333333331 11222 355566666666655433332221111 3566677777777766776
Q ss_pred HHHHHHHHhhc-------------------CC--------------------------h-------HHHHHHHHcCChHH
Q 017651 305 PALRTVGNIVT-------------------GD--------------------------D-------FQTQCIITYGALPY 332 (368)
Q Consensus 305 ~a~~~l~nl~~-------------------~~--------------------------~-------~~~~~~~~~g~l~~ 332 (368)
..+.++..+.. +. + -....+++.|+++.
T Consensus 259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~ 338 (371)
T PF14664_consen 259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEA 338 (371)
T ss_pred HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence 66666665441 00 0 01122357899999
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 333 LLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 333 l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
|..++.+.+++.+.+.|...|+++.
T Consensus 339 L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 339 LVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999998878899999999998875
No 63
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.62 E-value=7.8e-08 Score=57.74 Aligned_cols=41 Identities=29% Similarity=0.588 Sum_probs=37.8
Q ss_pred ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 317 ~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++++.+.+++.|+++.|+.+|.++ ++.++++|+|+|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 356788999999999999999988 99999999999999985
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.57 E-value=1.8e-06 Score=77.42 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=144.8
Q ss_pred hHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 017651 110 IEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNV 187 (368)
Q Consensus 110 ~~~~i~~g~i~~Lv~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl 187 (368)
.+++...|++..|+.++..++. ..++.+|++.|..+.. .++++.+...| +..++.+-+. ..+++....+.+|+++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3566678999999999998863 4679999999999887 57788888766 5555555443 5578999999999999
Q ss_pred hCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCCh-hhhhchHHHHHHhhcCCCHHHHHHHH
Q 017651 188 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPF-DQVRPALPALAQLVHSNDEEVLTDAC 265 (368)
Q Consensus 188 a~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~ 265 (368)
..++.+....++..|+++.++--. ...++.+.++++.+|.|++-+.. .... .....+.+.|..+-.+.|+-.+.+||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988889999999999999888 66779999999999999887652 2222 22244556777777778888999999
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcc
Q 017651 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS 301 (368)
Q Consensus 266 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 301 (368)
.+++-|+... +.-..+..+|.+..+-.++.+.+|.
T Consensus 329 lAV~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~ 363 (832)
T KOG3678|consen 329 LAVAVLATNK-EVEREVRKSGTLALVEPLVASLDPG 363 (832)
T ss_pred HHHhhhhhhh-hhhHHHhhccchhhhhhhhhccCcc
Confidence 9999999763 3335566778777777777665553
No 65
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.54 E-value=2.7e-05 Score=72.95 Aligned_cols=257 Identities=15% Similarity=0.129 Sum_probs=173.7
Q ss_pred CCchHHHHhcCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCC-----
Q 017651 107 SPPIEEVIQSGVVPRFVEFL---------MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP----- 172 (368)
Q Consensus 107 ~~~~~~~i~~g~i~~Lv~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~----- 172 (368)
....+.+.....+..|.++- ....++.+..+|++||.|+...++..+..+++.|..+.++..|+..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 33445555555566666555 2333489999999999999998999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHHhcc----------------ccchhHHHHHHHHHHHhhcCCC
Q 017651 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAQLNE----------------RAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 173 ~~~v~~~a~~~L~nla~~~~~~~~~i~~~-~~i~~l~~~l~~----------------~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
+.++.-..+..|.-++...+..+..+++. +++..++..|.. ..+......++..+.|+....+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 78888889999888887777777666544 677777766521 0245667788999999987764
Q ss_pred CCChhh----hhchHHHHHHhh---cCC--CHHHHHHHHHHHHHhhcCChHH-----------HHHHHHcCChHHHHHhc
Q 017651 236 QPPFDQ----VRPALPALAQLV---HSN--DEEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELL 295 (368)
Q Consensus 236 ~~~~~~----~~~~~~~L~~lL---~~~--d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~~~~~~~~L~~lL 295 (368)
...... ...+++.+..++ ..+ .......++.+|.++--..... .........+..|+.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 433212 234445555552 111 2456777777777773111111 00001123456666666
Q ss_pred CC-----C---CcchHHHHHHHHHHhhcCChHHHHHHHH----------------cCChHHHHHhhCCCCCccHHHHHHH
Q 017651 296 GH-----P---SPSVLIPALRTVGNIVTGDDFQTQCIIT----------------YGALPYLLGLLTHSHKKSIKKEACW 351 (368)
Q Consensus 296 ~~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~----------------~g~l~~l~~ll~~~~~~~v~~~a~~ 351 (368)
.. . -.+...+.+.+|.+++......++++.. ..+-..|++++.+. .+.+|..++-
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 21 1 1357889999999999887655555542 24677899999999 6999999999
Q ss_pred HHHHHhcCCHHHh
Q 017651 352 TISNITAGNRDQI 364 (368)
Q Consensus 352 ~l~nl~~~~~~~i 364 (368)
.+..+|..+.+.+
T Consensus 331 llf~Lc~~d~~~~ 343 (446)
T PF10165_consen 331 LLFVLCKEDASRF 343 (446)
T ss_pred HHHHHHhhhHHHH
Confidence 9999998776654
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.54 E-value=2.9e-06 Score=77.95 Aligned_cols=267 Identities=18% Similarity=0.115 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHHhhcC-CCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHH
Q 017651 87 DSSLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165 (368)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~-~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 165 (368)
+...++.|+.+|.+-+-. ..+-+.+. -..-++...++....++ .+++..|..||..|..-.-.....+++.-.....
T Consensus 191 ~~avRLaaL~aL~dsl~fv~~nf~~E~-erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 191 TSAVRLAALKALMDSLMFVQGNFCYEE-ERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchh-hhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777652210 00000000 01113444555556666 8999999999999988666777777777777788
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH----------------HhcCChHHHHHHhcc-c-----cchhHHHHH
Q 017651 166 VKLLASPSDDVREQAVWALGNVAGDSPRCRDLV----------------LSQGALIPLLAQLNE-R-----AKLSMLRNA 223 (368)
Q Consensus 166 ~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i----------------~~~~~i~~l~~~l~~-~-----~~~~~~~~a 223 (368)
.+.++++++++..+++...+.++...-...-.. .-.+++|.|+++|.+ + ++..+-..|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 889999999999999988888874321110000 012368899999964 2 234555667
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchH
Q 017651 224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303 (368)
Q Consensus 224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~ 303 (368)
..||.-+++...+ ..+.+++..+-+-++++++.-+..+..+++.+..++.+....-+-...+|.+...+.++.-.++
T Consensus 349 ~sCLqlfaq~~gd---~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk 425 (858)
T COG5215 349 SSCLQLFAQLKGD---KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425 (858)
T ss_pred HHHHHHHHHHhhh---HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence 7777766655422 2234456666677788899999999999999999877655544445678888888887778899
Q ss_pred HHHHHHHHHhhcCChHHHHHHHH-cCChHHH-HHhhCC-CCCccHHHHHHHHHHHHhcCCHH
Q 017651 304 IPALRTVGNIVTGDDFQTQCIIT-YGALPYL-LGLLTH-SHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~l-~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
..+.||+|.|+..-+. .++ .|-++.. ...+.. .+.+.+...++|..-|++..-++
T Consensus 426 ~ttAwc~g~iad~va~----~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 426 STTAWCFGAIADHVAM----IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAK 483 (858)
T ss_pred hHHHHHHHHHHHHHHH----hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhh
Confidence 9999999999864332 222 2222222 222211 12568889999999999875433
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.53 E-value=4.9e-05 Score=69.97 Aligned_cols=219 Identities=21% Similarity=0.107 Sum_probs=143.8
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 75 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
.++.++..+. .++.+....++..+... + .+. .+..|+..|.+++ +.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---E-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 4666777774 45566655555444321 1 111 2677888888777 6788888888875444
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
....+.|+.+|.++++.++..++.+++..-.+ ..+.+...| ++.+..++..++.++..+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------------~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD------------PGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC------------hHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 14567788888888888888777777662211 245677777 677888888888888877754
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH----c------------------CChHHH
Q 017651 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE----A------------------GVCPRL 291 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----~------------------~~~~~L 291 (368)
..+|.|...+.+.|+.|+..|+++++.+-. +.....+.. . ..++.|
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L 245 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL 245 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence 456667777888888888888888766632 111111111 1 234445
Q ss_pred HHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 292 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
..++.++ .++..++.++|.+-.. ..++.|+..+.+. .+++.|.++++.|+.
T Consensus 246 ~~ll~d~--~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 246 RELLQAA--ATRREALRAVGLVGDV-----------EAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred HHHhcCh--hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 5555443 3677777777765432 4578888888766 499999999999997
No 68
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.52 E-value=1.3e-07 Score=56.79 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=37.9
Q ss_pred CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 017651 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 189 (368)
Q Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~ 189 (368)
+++++..+++.|++|.|+.+|.+++.++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35778899999999999999999999999999999999973
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.2e-05 Score=75.89 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=165.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
+-+-++.+|+++. |-+|..|+.++..+....++... ..+|.|..-|.++++.|+..|+.+++.||..+|...
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 4566788888888 89999999999999886555432 468999999999999999999999999999888642
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHH--HhhcC
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALS--YLSDG 274 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~--~l~~~ 274 (368)
+. .-|.+..+|..+.+--+....+..+++|+-..|. .-..++|.|..++++.. ..+...+..++. +++.+
T Consensus 217 -L~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 -LQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -cc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 12 4678888887788888889999999999866442 23468888999987664 455555555543 34444
Q ss_pred ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 275 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
.++....+- =++..|-.++.+.++.++.-++.+++.+....+...+. --+.++.+|.+. ++.+|-.|.-.+.
T Consensus 290 ~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 323222111 14677777888999999999999999999877765553 355678888888 8899999888887
Q ss_pred HHhc
Q 017651 355 NITA 358 (368)
Q Consensus 355 nl~~ 358 (368)
-+..
T Consensus 362 gmVs 365 (877)
T KOG1059|consen 362 GMVS 365 (877)
T ss_pred HHhh
Confidence 7764
No 70
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.50 E-value=1.8e-05 Score=71.86 Aligned_cols=230 Identities=28% Similarity=0.330 Sum_probs=164.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.++.+++.+.+.++.++..|+..+..+-.. -.++.+..++.+.+ +.+|..|+.+|+.+-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------ 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence 578889999998999999999887765332 25899999999998 89999999988876652
Q ss_pred HHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-----------chhHHHH
Q 017651 155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----------KLSMLRN 222 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-----------~~~~~~~ 222 (368)
..++.|+.++. +++..++..+.++|+.+-... .+.+++..+.... ...++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 36889999998 699999999999999985432 3677777773322 1134555
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcch
Q 017651 223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302 (368)
Q Consensus 223 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v 302 (368)
+...+..+-.. ..++.+...+.+.+..++..+..+++.+.... ..+...+...+.+++..+
T Consensus 169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 55555555433 46778889999888999999999999988764 234677888888899999
Q ss_pred HHHHHHHHHHhhcCChHH--HHHHH-------------H-----cCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 303 LIPALRTVGNIVTGDDFQ--TQCII-------------T-----YGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 303 ~~~a~~~l~nl~~~~~~~--~~~~~-------------~-----~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
+..++..+|.+-...... ...+. . ......+...+.+. ...++..+++.+.-+..+
T Consensus 230 r~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 230 RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDE-ANAVRLEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhcccCchhhHHHHHHHhhcc-hhhHHHHHHHHHHhhccc
Confidence 999988888875432211 00010 1 01133444444555 667777777777766553
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.48 E-value=5.1e-05 Score=69.85 Aligned_cols=191 Identities=20% Similarity=0.106 Sum_probs=138.4
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
.++.|+..|.....+++...+++++..... + .++..|+..|.+.++.++..++.+|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~------- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR------- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch-------
Confidence 478899999644437888877776643221 1 1389999999999999999999999976322
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 277 (368)
+..+.|+..+ .+.++.++..++.++.... ....+.+..+|++.|+.|+..++.+++.+-..
T Consensus 117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 1467788888 7888889888887776622 12456788889999999999999999998743
Q ss_pred HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHH------------------HHHc----CChHHHHH
Q 017651 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC------------------IITY----GALPYLLG 335 (368)
Q Consensus 278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~------------------~~~~----g~l~~l~~ 335 (368)
..++.|...+.+.++.+|..|++.++.+-. +..... ++.. ..++.|..
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 235567777999999999999999887732 111111 1111 34566666
Q ss_pred hhCCCCCccHHHHHHHHHHHHhc
Q 017651 336 LLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 336 ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+++++ .++..++++++.+..
T Consensus 248 ll~d~---~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 248 LLQAA---ATRREALRAVGLVGD 267 (410)
T ss_pred HhcCh---hhHHHHHHHHHHcCC
Confidence 76665 499999999997653
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.47 E-value=1.7e-06 Score=64.50 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=100.3
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
+.+..|+.-+....+.+.+.+...-|.|.+. +|.+-..+.+..+++.++..|..++..+++.++..|+|+|.+. ....
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HHHH
Confidence 4466666656554448999999999999999 4888899999999999999999999999999999999999986 4678
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.+.+.++++.++..+ .++...+...++.++..|+.+.
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 899999999999999 7888888999999999999765
No 73
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=4.8e-05 Score=72.79 Aligned_cols=224 Identities=16% Similarity=0.179 Sum_probs=126.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
...+.+=|++++ .-++-.|+.+|+++++ ++... ...|-+-++|+++++.++..|+.|...+....|..-+.
T Consensus 109 tNslknDL~s~n-q~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~- 179 (866)
T KOG1062|consen 109 TNSLKNDLNSSN-QYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH- 179 (866)
T ss_pred HHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-
Confidence 455666677777 6788889999999988 34332 34577788999999999999999999998887765443
Q ss_pred HhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---------------CCCHHHHHH
Q 017651 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---------------SNDEEVLTD 263 (368)
Q Consensus 199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~---------------~~d~~v~~~ 263 (368)
++++...+| .+.+..+....+..+..+|...+ ........+++.++..|. -+||.++..
T Consensus 180 ----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~-~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~ 253 (866)
T KOG1062|consen 180 ----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISP-DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR 253 (866)
T ss_pred ----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence 344444454 44444444444444444544322 111111223333333331 124455555
Q ss_pred HHHHHHHhhcCChHHHHHHHH-----------------cCChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChHHHHHHH
Q 017651 264 ACWALSYLSDGTNDKIQAVIE-----------------AGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCII 325 (368)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~-----------------~~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 325 (368)
++..|+-|-.++.+..+.+.+ +-+.+.+..++. .+++.+|..|+.+||.+..+.+.++.++-
T Consensus 254 iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 254 ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee
Confidence 555555554443333222211 001112222221 23456777777777777766664444332
Q ss_pred Hc--------------CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 326 TY--------------GALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 326 ~~--------------g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
-. .-=..++.+|+++ +..+|+.|.-.+..++-
T Consensus 334 Ln~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVN 379 (866)
T ss_pred hhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhc
Confidence 11 1123467788888 88888888887777764
No 74
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00022 Score=61.63 Aligned_cols=285 Identities=15% Similarity=0.178 Sum_probs=191.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch---HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI---EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~---~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
.+.|-..|..++..++..++..+..++...+...+ ..+++.|+++.++.++...+ .++-..|...+..|+. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 45666677788888999999988888765432222 34568999999999999888 7999999999999998 4666
Q ss_pred hHHHhhCCChHHHHH--hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651 153 TKVVIDHGAVPIFVK--LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~--lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
...+.+....+.+-. +-..-++-.+...+..+..|..-+|.........|.+..|..-+....|.-++.++......|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 777777666654432 222234455667788888888888888888999999999988886667888888888888888
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCh--H-HHHHHHHc--CChHHHHHhcCCCCcchH
Q 017651 231 CRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVCPRLVELLGHPSPSVL 303 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~--~-~~~~~~~~--~~~~~L~~lL~~~~~~v~ 303 (368)
........+..-.+++..+..++... +|.-.-.++-..+.+..... + .-+.+++. -.+....+.....+++.+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 87665666666678888888887543 44433334444444432210 0 00111111 124444555667889999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCC--hHHH-HHhhCCCCCccHHHHHHHHHHHHhcC---CHHHh
Q 017651 304 IPALRTVGNIVTGDDFQTQCIITYGA--LPYL-LGLLTHSHKKSIKKEACWTISNITAG---NRDQI 364 (368)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~~~~~g~--l~~l-~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~i 364 (368)
..|+.++|.+-+... ..+.+...|- ...+ ......+ ..--+..+..+|.||+.. .++|+
T Consensus 322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqi 386 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQI 386 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhc
Confidence 999999999876544 5665555443 2222 2333222 344567778899999873 45544
No 75
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=7.1e-05 Score=69.92 Aligned_cols=236 Identities=16% Similarity=0.121 Sum_probs=164.5
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
.++..|+.-+..+. +.+|.....||..+..... ... ..-..+.+.+++......-+..+.+.+..+..+.. -.
T Consensus 96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~-~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~ 168 (569)
T KOG1242|consen 96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSK-GLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IE 168 (569)
T ss_pred HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhh-ccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hh
Confidence 35778888888888 8999999999988766321 111 11245777888888888888899999999988764 35
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~ 276 (368)
.+.+.+++..+...+.......-++.+..++-..+..-.......+..++|.++..+.+..+.|+..+..+.-.+...-+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 66777888889888843333333333444444444443333333344677777777777788888888777766553321
Q ss_pred -HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 277 -DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 277 -~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
.... -+++.++.-+....+.....++..+|.++...+.+.... -..++|.+...|-++ ++.+|+.+..++-+
T Consensus 249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLK 321 (569)
T ss_pred cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 1111 134444444444478889999999999998888776644 448999999999999 99999999999999
Q ss_pred Hhc--CCHHHhhhc
Q 017651 356 ITA--GNRDQIQVM 367 (368)
Q Consensus 356 l~~--~~~~~i~~v 367 (368)
++. .+++ |+.+
T Consensus 322 ~~svidN~d-I~~~ 334 (569)
T KOG1242|consen 322 FGSVIDNPD-IQKI 334 (569)
T ss_pred HHHhhccHH-HHHH
Confidence 997 5555 6544
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.42 E-value=7.6e-06 Score=75.90 Aligned_cols=265 Identities=16% Similarity=0.137 Sum_probs=172.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
+..++..|++..+..+..|+.....++..- .......+...| ..|.+.|.... |++---.+.++..|.+...-...
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence 567788889999999999887666543211 011123333444 34667776666 78766666666655542111101
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.---.|++|.|.-+|++....++...+..++.|+..+|++...-....+.-.|++.| .+-+.+++++|..++..+++.-
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence 111248999999999999999999999999999998887433222223445677777 7778999999999999998763
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
.. ..++..|+.-|...+-.-+....-+++-.+..... ..++|.|+.=-..++..++.-.+.+++.+.
T Consensus 762 GP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 762 GP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred CH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 11 24566666666655544444444444444322111 124555555556677888988888888876
Q ss_pred cCChHH-HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651 315 TGDDFQ-TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 315 ~~~~~~-~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
..-.+. .+++. -+.|.|-+.|.+. ++.-|..|+-+|.+++.+.
T Consensus 829 eyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 829 EYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhcCC
Confidence 543322 22222 4677888888888 8889999999999888653
No 77
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5.1e-06 Score=75.79 Aligned_cols=243 Identities=13% Similarity=0.200 Sum_probs=171.9
Q ss_pred HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 017651 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (368)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~ 191 (368)
.+.+..+...|+++|+.|+ ..+...+...+.|..-.-+..+..++..|++..|+.++.+.+..++....|.+..+..+.
T Consensus 426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3557788999999999988 788888889999988877888899999999999999999999999999999999998665
Q ss_pred hh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--CChhhh------hchHHHHHHhhcCCCHHHHH
Q 017651 192 PR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQV------RPALPALAQLVHSNDEEVLT 262 (368)
Q Consensus 192 ~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~~~~L~~lL~~~d~~v~~ 262 (368)
.. .+-.++..-++..++.+. .+++-.++..+...|.|+..+... ...... .-++..+++.+...+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 33 233455556789999998 889999999999999999874421 111111 22455666667777776667
Q ss_pred HHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcC----C----------------------------------------
Q 017651 263 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLG----H---------------------------------------- 297 (368)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~----~---------------------------------------- 297 (368)
..|..|.+++..++...+.+.+. ..+..+..+|. .
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~ 663 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL 663 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence 77888888876655443333222 33333333220 0
Q ss_pred ---------CCcchHHHHHHHHHHhhc---CCh------HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 298 ---------PSPSVLIPALRTVGNIVT---GDD------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 298 ---------~~~~v~~~a~~~l~nl~~---~~~------~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
++.++-.+..|++-|+.- +.. +.++.+.+.|+-+.+..+..++ ++.+|+.+--+|-|+-
T Consensus 664 D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~-Sl~vrek~~taL~~l~ 740 (743)
T COG5369 664 DNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD-SLIVREKIGTALENLR 740 (743)
T ss_pred cccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 011233455565555432 111 5566666778888888877777 8899999999988763
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=98.42 E-value=2.1e-05 Score=75.25 Aligned_cols=236 Identities=19% Similarity=0.158 Sum_probs=164.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc--hHHHHhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNI 145 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~--~~~~i~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~~l 145 (368)
..+.+.+.+|++.+.+.++.++-.+.+++...+... .+.+.+.=+.+.+-++|.++. ....+.-|+.+|+.+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 357889999999998899999999999987642212 223666666788888888732 156788888999998
Q ss_pred hcCCCcch--HHHhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHH
Q 017651 146 ASGTSENT--KVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN 222 (368)
Q Consensus 146 ~~~~~~~~--~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~ 222 (368)
+. .++.. ..++ +-||.|+..+.+.+. ++...|+.+|..++.. +..+..+++.|+++.|.+.+.+ .......
T Consensus 85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~ 158 (543)
T PF05536_consen 85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEI 158 (543)
T ss_pred cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence 88 34433 2333 579999999987766 9999999999999954 5678999999999999999844 4555677
Q ss_pred HHHHHHHhhcCCCCC----ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHH----HHH
Q 017651 223 ATWTLSNFCRGKPQP----PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQAVIEAGVCPR----LVE 293 (368)
Q Consensus 223 a~~~L~~l~~~~~~~----~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~----L~~ 293 (368)
++.++.+++...... .......+++.+...+...........|..|+.+....+.. ........+... +..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 888888877654321 12223456666777777666777788888888887654211 112222233333 444
Q ss_pred hcCC-CCcchHHHHHHHHHHhhc
Q 017651 294 LLGH-PSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 294 lL~~-~~~~v~~~a~~~l~nl~~ 315 (368)
+|.+ ..+.-|.+++...+.+..
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 4533 356778888888777764
No 79
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.41 E-value=9.2e-06 Score=76.88 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=168.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCC-CchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--CCcc
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERS-PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--TSEN 152 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~-~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~ 152 (368)
+..++..|++..+.++..|+..+..++..-.. ..-..+-..| ..|.+.|.... |++---.+.++..|... -...
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeey-pEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence 34456677888899999998887766432101 1111222333 34678887766 77765555555444431 1111
Q ss_pred hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651 153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 232 (368)
+.. -.+++|.|.-+|++....+++.++..++.||..++++...-....+.-.|+.+| ..-+.++++++..++..++.
T Consensus 878 ~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHH
Confidence 111 137899999999999999999999999999988877533322333455677888 66678999999999999987
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 312 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n 312 (368)
.-. -..++..|+.-|...+-..+....-+|+-.+...... .++|.|+.--..++..++.-.+.+++.
T Consensus 955 aIG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 955 AIG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALSF 1021 (1172)
T ss_pred hcC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHHH
Confidence 531 0245566666665555444444333443333221111 245666655567788889989998888
Q ss_pred hhcCChHHH-HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 313 IVTGDDFQT-QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 313 l~~~~~~~~-~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
+...-.+.. +++. -+.|.|-+.|.+. +..-|..|+-++.+++-|
T Consensus 1022 ~FeyigemskdYiy--av~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIY--AVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHHhhhHHH--HhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 875433222 2222 4678888888888 888899999999888865
No 80
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.40 E-value=2.6e-05 Score=66.87 Aligned_cols=224 Identities=17% Similarity=0.207 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHh-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHH
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPL 207 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~-~~~i~~l 207 (368)
+-.+.-|+.|+.++... ++.+...- +...-..++.+++. ...+++...+.+++-+.... .+.+.+-. ...+.-+
T Consensus 163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH
Confidence 55678888999999884 55555443 33344556666665 45788899999988887664 34322221 2246667
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHHHHhhc---CCCHHHHHHHHHHHHHhhcC--------
Q 017651 208 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPALAQLVH---SNDEEVLTDACWALSYLSDG-------- 274 (368)
Q Consensus 208 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~~l~~~-------- 274 (368)
+.+.+......+.+-++..+.|++...|...+. ...+-+...++.|. ..|++++.+.-..=+.|...
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 777766668889999999999999854433322 12332334444443 34666655543332222110
Q ss_pred -------------C---------hHHHHHHHHc--CChHHHHHhcCCCCcc-hHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 017651 275 -------------T---------NDKIQAVIEA--GVCPRLVELLGHPSPS-VLIPALRTVGNIVTGDDFQTQCIITYGA 329 (368)
Q Consensus 275 -------------~---------~~~~~~~~~~--~~~~~L~~lL~~~~~~-v~~~a~~~l~nl~~~~~~~~~~~~~~g~ 329 (368)
+ ....+.+.+. .++..|..+|.+..+. ...-||.-|+.++...|+....+...|+
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~ 400 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV 400 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence 0 1233444443 5788899999777665 6788999999999999999998889999
Q ss_pred hHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 330 LPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 330 l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
-..++.++.|+ +++||-+|.-++.-+..
T Consensus 401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 401 KEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 99999999999 99999999999877654
No 81
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.36 E-value=2.3e-05 Score=71.15 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=145.0
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
..++.+++++.+++ +.++..+++.++.+... -+++.+..++.+.++.++..++.+|+++-.. .
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDP--E--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--h---
Confidence 35888999999987 89999999997776652 3789999999999999999999999987422 2
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH------------HHHHHH
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE------------EVLTDA 264 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~------------~v~~~a 264 (368)
.+++++..+..+.+..++..+.++|..+-.. ..++.++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 5889999995578999999999999988754 236666777766542 344445
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCcc
Q 017651 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS 344 (368)
Q Consensus 265 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~ 344 (368)
...++.+-. ...++.+...+.+....++..|..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444444432 234777888888888899999999999998765 24456677778887 888
Q ss_pred HHHHHHHHHHHHhc
Q 017651 345 IKKEACWTISNITA 358 (368)
Q Consensus 345 v~~~a~~~l~nl~~ 358 (368)
+|..++.+++.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 88888888887764
No 82
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.36 E-value=1.7e-06 Score=64.62 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=107.4
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 017651 162 VPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240 (368)
Q Consensus 162 i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 240 (368)
+..|+.-. ...+.+-+++...-|.|+|.|. ..-..+.+..+++.++..| ..+++.+...+...|+|+|-++.+..+.
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSL-EEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHh-hcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 44444433 3468899999999999999986 4558888999999999999 8889999999999999999887777777
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017651 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL 295 (368)
...+.+|.++..+.++...+...++.++.+|+.+.....+.+....++..+.++-
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 7788999999999999999999999999999988766556666555555555554
No 83
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.35 E-value=7.8e-06 Score=69.87 Aligned_cols=189 Identities=16% Similarity=0.134 Sum_probs=119.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC-CCCchHHHHh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC
Q 017651 84 WSDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQ--SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~-~~~~~~~~i~--~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 160 (368)
.+.+++.+..|+..|+.++.+. .......++. ..++..+...+.+.. ..+...|+.++..++..........++ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 4688999999999999998764 1122222221 155667777777766 689999999999998754444444433 4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC--CCC
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP--QPP 238 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~ 238 (368)
.+|.|+..+.++...+++.|..+|..|+...+.... .+..++.....+.++.++..++..+..+...-+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 789999999999999999999999999987651111 223333333378899999999988888876654 121
Q ss_pred hh---hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 017651 239 FD---QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280 (368)
Q Consensus 239 ~~---~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~ 280 (368)
.. ....+.+.+..++.+.+++|+..|-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 11 1256788899999999999999999999888765444433
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.33 E-value=2.3e-05 Score=77.95 Aligned_cols=267 Identities=16% Similarity=0.161 Sum_probs=176.0
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----CC
Q 017651 76 LPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG----TS 150 (368)
Q Consensus 76 i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~----~~ 150 (368)
++.+...+.+ ...+.+..|+..|..+...- .++..-.-++|.++.++.++. ++||..|+..|+.+... .+
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4444444443 34567788888888774321 122223457999999999998 89999999988886542 22
Q ss_pred cchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------------------hhh-----------HHHHHh
Q 017651 151 ENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS------------------PRC-----------RDLVLS 200 (368)
Q Consensus 151 ~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~------------------~~~-----------~~~i~~ 200 (368)
.....+.+ -++|.|-.++.+ ....++-.-+.+|+.||... +.. ...+..
T Consensus 499 ~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 499 SDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred ccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 22333333 478899999988 44555555556665554211 100 000111
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 017651 201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280 (368)
Q Consensus 201 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~ 280 (368)
.+...+.-|..++++-+++..+..|.-||-..... ....-+++.|..+|++.|+.++..-...|..++-.-.-
T Consensus 578 --~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--- 650 (1431)
T KOG1240|consen 578 --TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--- 650 (1431)
T ss_pred --HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence 12223322325666778888888888888653211 11124788999999999999999888888877643111
Q ss_pred HHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 281 ~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.-++..++|.|.+-|.++.+.+...|++++.-|+...--....+. .+++....+|-++ +..+|..+|..|..++.
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 113456789999999999999999999999999875543333333 3677788899999 99999999999988775
No 85
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=6e-06 Score=75.40 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=132.6
Q ss_pred HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcCCC
Q 017651 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSND 257 (368)
Q Consensus 179 ~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~lL~~~d 257 (368)
.++.+|-.++..-...|.-+....+.++|+++| ..++..+..-+...+.|+.-...+ .......+++..|+.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 344445555555556777788888899999999 667776666777888887765433 334445789999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChH---HHHHHHHc----CC
Q 017651 258 EEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCIITY----GA 329 (368)
Q Consensus 258 ~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~---~~~~~~~~----g~ 329 (368)
..++....|.+..+..+.....+ .++..-++..++.+.+++...++..++.++.|+.+.+.. ..+.++.. -+
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999876554432 355556789999999999999999999999999874432 22222221 24
Q ss_pred hHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 330 l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
...|++-+... +|-.-.+.|+.|.|+++.+
T Consensus 567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d 596 (743)
T COG5369 567 FKRLIDKYEEN-NPMEILEGCYILVRNAACD 596 (743)
T ss_pred HHHHHHHHHhc-CchhhhhhHHHHHHHHhcc
Confidence 45566666676 7777788899999999844
No 86
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00012 Score=70.11 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=16.3
Q ss_pred CCchHHHhhhHHHHHHHHHHhhh--HHHHhh
Q 017651 20 VDADEGRRRREDNMVEIRKNKRE--ESLLKK 48 (368)
Q Consensus 20 ~~~~~~r~kr~~~~~~lRk~kr~--~~l~~k 48 (368)
++..|-|+--+.....||+.-|+ .-..+|
T Consensus 21 kT~AEEr~vI~kE~a~IRa~ire~~~d~~~r 51 (866)
T KOG1062|consen 21 KTAAEERAVIQKECAAIRASIREPTNDPRKR 51 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 34444454344455688888887 444333
No 87
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.29 E-value=3.6e-06 Score=60.13 Aligned_cols=87 Identities=29% Similarity=0.438 Sum_probs=70.0
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 119 VPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 119 i~~Lv~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
||.|++.| ++++ +.+|..++++|+.+-. + .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 6566 9999999999995432 1 35899999999999999999999999983
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 228 (368)
....++.|.+++.++++..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 11278999999966667777888888874
No 88
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.27 E-value=6.1e-05 Score=73.29 Aligned_cols=275 Identities=13% Similarity=0.125 Sum_probs=166.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 157 (368)
Q Consensus 78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 157 (368)
.|++.+.++|.+.++-|+.-|-+-+... ....+.--+..++..++++|++.+ +++|..|.+|++-+++.-.+.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence 7788888999999999998877665532 222222234567899999999988 8999999999999997432221 1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH----hccc-cchhHHHHHHHHHHHhhc
Q 017651 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ----LNER-AKLSMLRNATWTLSNFCR 232 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~----l~~~-~~~~~~~~a~~~L~~l~~ 232 (368)
+ ..+..|+.-+-+.....+..+.-.|--...+-+..........+++.++.. +... +...++..++-.+..+-.
T Consensus 84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 1 235556665545445555544433332222222111222223334444444 4322 233366666666665444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhcCC-CCcchHHHHHHHH
Q 017651 233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTV 310 (368)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l 310 (368)
....--.....+++..+..-+.++-.-|+..++.+|+.++...+. ... +++..|+.-|.. .++.....-+.+|
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHH
Confidence 332111113346677777778888889999999999999865432 222 346667766643 3444445556677
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhh---CCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651 311 GNIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNITAGNRDQIQ 365 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~i~ 365 (368)
+.++.........-.+ .++|.+.+.. +.. +.++|+.+.-++.-+..-+|..|-
T Consensus 238 ~~i~r~ag~r~~~h~~-~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~ 293 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSHLD-KIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEIL 293 (1233)
T ss_pred HHHHHHhcchhhcccc-hhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhc
Confidence 7776543322221111 5677787777 444 788999999998888876665543
No 89
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.26 E-value=1.2e-06 Score=56.42 Aligned_cols=55 Identities=27% Similarity=0.446 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHH
Q 017651 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (368)
Q Consensus 300 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl 356 (368)
|.+|..|+++||+++...+........ .+++.|..+|.++ ++.||..|+|+|+||
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 468999999999999888877765444 7999999999998 789999999999986
No 90
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.24 E-value=2.5e-06 Score=60.97 Aligned_cols=87 Identities=32% Similarity=0.471 Sum_probs=70.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHH
Q 017651 246 LPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324 (368)
Q Consensus 246 ~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 324 (368)
+|.|++.| .++++.++..++++|+.+- +. .+++.|..+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 7889999999999999553 21 24888999999999999999999999883
Q ss_pred HHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651 325 ITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 325 ~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
+...++.|..++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12478889999988746677999999885
No 91
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00045 Score=65.47 Aligned_cols=270 Identities=13% Similarity=0.092 Sum_probs=169.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCCcchH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
+..+.+.|.+.|+.....|+.++.++-+.+ ....+ ..+ |+ ++|-++++ +-++..|+-||..+...+++..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-~~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-ADD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-hhh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 455566667788888888888888885432 12221 111 33 55555432 5788999999999988766532
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc------------ccchhHHHH
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE------------RAKLSMLRN 222 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~------------~~~~~~~~~ 222 (368)
-..+.+..++.+|.+.+-.+...+...+.-|+...|+.....+.. .+..|...... -+.+-++..
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 223578899999999888888888888888887766532221111 23333332211 134566777
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC----------HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 017651 223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND----------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (368)
Q Consensus 223 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 292 (368)
++..|.++-. ..+..........+-.+|...+ .......++-.-+++.+-+..-+.+. ..+..|-
T Consensus 261 l~rlLq~~p~---~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg 335 (938)
T KOG1077|consen 261 LLRLLQIYPT---PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG 335 (938)
T ss_pred HHHHHHhCCC---CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence 7777776622 1111222233344444443211 12333344444445443332223333 3578899
Q ss_pred HhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhh
Q 017651 293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQ 365 (368)
Q Consensus 293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~ 365 (368)
.+|.+.+..+|--|+..++.+++... ..+.+-.+ .+.++..|+...+..+|+.|.-.|.-+|. +|..+|-
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV 406 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIV 406 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHH
Confidence 99999999999999999999998754 34444444 78888999855488999999999999997 7777663
No 92
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.19 E-value=4.1e-05 Score=72.66 Aligned_cols=262 Identities=18% Similarity=0.218 Sum_probs=160.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCC----CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 79 MVAGVWSDDSSLQLEATTQFRKLLSIE----RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 79 l~~~l~~~~~~~~~~a~~~l~~l~s~~----~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
|.+.|...++++.-..+.++..+.+.- ..+++. +++|.|...|++.+ ..++..++..++.|+...++...
T Consensus 846 LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~-----dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~ 919 (1172)
T KOG0213|consen 846 LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK-----DLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVS 919 (1172)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh-----hhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCC
Confidence 334445556665444444444333321 234443 56999999999988 89999999999999986666432
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch-hhHHHHH----------------------h-cC---ChHH
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SP-RCRDLVL----------------------S-QG---ALIP 206 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~-~~~~~i~----------------------~-~~---~i~~ 206 (368)
.--.--+---|+.+|.+.+.+++..|..++|.|+.- .| ..-..++ + +| ++|.
T Consensus 920 aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPa 999 (1172)
T KOG0213|consen 920 AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPA 999 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHH
Confidence 222222334577788888999999999999999742 11 1111111 1 12 2333
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651 207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (368)
Q Consensus 207 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 286 (368)
|+.-. ..++..++.-++.+++.+......-....+..+.|.|-+.|.+.|..-+..|+.++..++-+.... |
T Consensus 1000 lmneY-rtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~-------g 1071 (1172)
T KOG0213|consen 1000 LMNEY-RTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT-------G 1071 (1172)
T ss_pred HHhhc-cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc-------C
Confidence 33332 345667777778888877766444444455667788888888889989999999999998774332 3
Q ss_pred ChHHHHHhc-------CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-
Q 017651 287 VCPRLVELL-------GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA- 358 (368)
Q Consensus 287 ~~~~L~~lL-------~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~- 358 (368)
....++.+| -.++|.+......++-.+...-. ...++.++.+-|-|+ ...|| ..-|.+.|...
T Consensus 1072 ~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg-------~~~~~~Y~~QGLFHP-arkVR-~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1072 CEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG-------PQAMLKYCLQGLFHP-ARKVR-KRYWTVYNSMYH 1142 (1172)
T ss_pred cHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHhccCc-HHHHH-HHHHHHHHhHhh
Confidence 344444444 34566666666665555432111 112356667767777 55555 46676666654
Q ss_pred CCHHH
Q 017651 359 GNRDQ 363 (368)
Q Consensus 359 ~~~~~ 363 (368)
++++.
T Consensus 1143 ~~~da 1147 (1172)
T KOG0213|consen 1143 GSQDA 1147 (1172)
T ss_pred cccch
Confidence 55544
No 93
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=2.4e-05 Score=74.66 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=60.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
...+.+.++++++..+..|+.+..++. ..+.+...+.|+++.|-.++.+++ |.+...|+.+|..|...++.
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCC
Confidence 567788888999999999999999885 445667778999999999999777 99999999999999986554
No 94
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.00014 Score=69.60 Aligned_cols=234 Identities=15% Similarity=0.127 Sum_probs=165.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch---HHHhhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhh
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT---KVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVA 188 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nla 188 (368)
+...+.+|+..+ .+-|..++..++++...++... +.+.++=+.+.+-++|.+ +....+..|+.+|+.++
T Consensus 7 l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 667788899888 6889999999999998655322 346677678889999987 44677889999999999
Q ss_pred CCChhh-HHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHH
Q 017651 189 GDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA 267 (368)
Q Consensus 189 ~~~~~~-~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~ 267 (368)
.+..-. ...+.. -||.|+..+....+.++...+..+|..++..+.........+.++.|.+.+.+ .+.....++.+
T Consensus 86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 854321 123333 59999999966666699999999999999665555555557999999999877 56677888888
Q ss_pred HHHhhcCChH-----HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH-----HHHHHHcCChHHHHHhh
Q 017651 268 LSYLSDGTND-----KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-----TQCIITYGALPYLLGLL 337 (368)
Q Consensus 268 l~~l~~~~~~-----~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-----~~~~~~~g~l~~l~~ll 337 (368)
+.+++..... ....+ ..+++.+...+.......+-.++..++++....+.. ...-+-..+...+..+|
T Consensus 163 L~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 8887754331 11111 134566666666666777888999999997766311 11122234566677788
Q ss_pred CCCCCccHHHHHHHHHHHHhc
Q 017651 338 THSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 338 ~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++.-.+.-|..|....+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 776566667777777766664
No 95
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.00037 Score=65.29 Aligned_cols=266 Identities=13% Similarity=0.157 Sum_probs=165.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
..+|.++....+..+.++..|..+...+.+.-..-.+.. ++|.++.-+.... ..-+..++..|+.++...+.+.
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~k-WrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHH
Confidence 357777777777778888877777776655431222222 2454444444334 5778888999998888655544
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
.... ..++|.+...|-+..+++++++..+|.+++.--.. .+ +.. .+|.|++.+ .++...+. .+...|+.-.-.
T Consensus 290 s~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~d-I~~--~ip~Lld~l-~dp~~~~~-e~~~~L~~ttFV 362 (569)
T KOG1242|consen 290 SLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-PD-IQK--IIPTLLDAL-ADPSCYTP-ECLDSLGATTFV 362 (569)
T ss_pred HHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-HH-HHH--HHHHHHHHh-cCcccchH-HHHHhhcceeee
Confidence 4444 57999999999999999999999999999753221 11 222 578888888 44432222 222222211110
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT--NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~ 311 (368)
.........-++|.|.+-+...+..+...++.++.|++.-- +.....++. .++|.+-..+....|++|..+.+++|
T Consensus 363 -~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 363 -AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred -eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 11111122335666666666677888899999999999653 222222221 35566666666778999999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.+...-.+.. + .+.+|.+...+.+.....-+..++-.++..++
T Consensus 441 ~l~e~~g~~~--f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 441 ALLERLGEVS--F--DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred HHHHHHHhhc--c--cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 8875433211 1 46677777777655344455556666666555
No 96
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=4.3e-05 Score=71.56 Aligned_cols=263 Identities=19% Similarity=0.112 Sum_probs=168.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHH---HHHHHHh--cCCCcch
Q 017651 79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAA---WALTNIA--SGTSENT 153 (368)
Q Consensus 79 l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~---~~L~~l~--~~~~~~~ 153 (368)
+.....++|..++..|+..+..+-.+. .. ..-+....++.+++.+ .+||..|+ |.++|.. ....+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL-----~~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL-----SKACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--cc-----cHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 555556666666666666665552211 00 1113667888898887 79998885 5555555 1111222
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC------------------------------
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA------------------------------ 203 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~------------------------------ 203 (368)
+.-....++..++..+.+-+..++-.|+.+||.+-.-+.++-.+.++...
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 22222347888899999988889999999998876554443333222222
Q ss_pred --------------------hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHH
Q 017651 204 --------------------LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTD 263 (368)
Q Consensus 204 --------------------i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~ 263 (368)
...++.-| .+.-.+++++|...+..|+...|. +. ...+..|+++++++...|+..
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGl-EDEf~EVR~AAV~Sl~~La~ssP~--FA--~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGL-EDEFYEVRRAAVASLCSLATSSPG--FA--VRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred ccCchhhccccccccccccccceeeeec-hHHHHHHHHHHHHHHHHHHcCCCC--cH--HHHHHHHHHHhccHHHHHHHH
Confidence 22222222 223347899999999999987543 22 257888999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCc
Q 017651 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343 (368)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~ 343 (368)
|+.++..++.+ ..+....++.+...|.+.++++|+..-..|++.-..+-+..... +..++..|.. -|
T Consensus 430 ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~k--yP 496 (823)
T KOG2259|consen 430 AIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMC-----VAHLLKNLGK--YP 496 (823)
T ss_pred HHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhhh--CC
Confidence 99999988865 22334457788888888899999988888777654443333322 2233333332 23
Q ss_pred cHHHHHHHHHHHHhcCCHHHhhhc
Q 017651 344 SIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 344 ~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
.=+-+...+++.|...++.+++.+
T Consensus 497 qDrd~i~~cm~~iGqnH~~lv~s~ 520 (823)
T KOG2259|consen 497 QDRDEILRCMGRIGQNHRRLVLSN 520 (823)
T ss_pred CCcHHHHHHHHHHhccChhhHHHH
Confidence 446677778888888888877654
No 97
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00095 Score=60.02 Aligned_cols=229 Identities=13% Similarity=0.141 Sum_probs=161.3
Q ss_pred CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-----C----cchHHHhhCCChHHHHHhhCCCCH---
Q 017651 107 SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-----S----ENTKVVIDHGAVPIFVKLLASPSD--- 174 (368)
Q Consensus 107 ~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L~~lL~~~~~--- 174 (368)
+.....+++.++++.|+.+|.+.+ .++....+..|..++..+ . .....+++.++++.|++-+.--+.
T Consensus 115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 344456889999999999999998 799999999999887632 1 234567888999999998864333
Q ss_pred ---HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHH
Q 017651 175 ---DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPAL 249 (368)
Q Consensus 175 ---~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L 249 (368)
.-...++..+-|+..-.+.+...+.+.|.+..|+..+... .-......+...++-+.+.... .....--.++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 3345678888999998889999999999999988866433 3334455666777766665432 2111113456666
Q ss_pred HHhhc----CC-----CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--
Q 017651 250 AQLVH----SN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-- 318 (368)
Q Consensus 250 ~~lL~----~~-----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-- 318 (368)
++-+. ++ ..+...+...+|+.+...+... ..++...++....-.++. ....+..++.+|-....+.+
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence 55542 11 2466777777787777665444 667777667665555555 55678899999999998887
Q ss_pred HHHHHHHHcCChHHHHHhhC
Q 017651 319 FQTQCIITYGALPYLLGLLT 338 (368)
Q Consensus 319 ~~~~~~~~~g~l~~l~~ll~ 338 (368)
..+..+++.+++..++.+..
T Consensus 352 ~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHh
Confidence 77778888877777776554
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.12 E-value=1.6e-05 Score=67.97 Aligned_cols=186 Identities=14% Similarity=0.056 Sum_probs=119.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--hhhHHHHHhc--CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 017651 170 ASPSDDVREQAVWALGNVAGDS--PRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 245 (368)
Q Consensus 170 ~~~~~~v~~~a~~~L~nla~~~--~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 245 (368)
.+.+.+.+..++.-|..+.... ......+... ..+..+...+ .+....+...++.++..++......-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5678899999999998887544 1122222221 2445666666 566778899999999999987543322345778
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC-hHHHHHhcCCCCcchHHHHHHHHHHhhcCCh---HHH
Q 017651 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLGHPSPSVLIPALRTVGNIVTGDD---FQT 321 (368)
Q Consensus 246 ~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~ 321 (368)
+|.|++.+.+....++..|..+|..++....... .+ ++.+...+.+.++.+|..++..+..+....+ ...
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 9999999998888999999999999997654111 12 5667777899999999999999999976554 111
Q ss_pred HH-HHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651 322 QC-IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 322 ~~-~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
.. ..-..+++.+...+.+. ++++|+.|--++..+....|+.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HH
T ss_pred cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHh
Confidence 11 11125788899999999 9999999888888876644443
No 99
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.12 E-value=0.00012 Score=71.33 Aligned_cols=210 Identities=15% Similarity=0.123 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l 211 (368)
..++.-|.-.|+.+-.+-.. ....+.-..++..+.+++.+++..|.++||+++.++-.. ++|-++..+
T Consensus 833 ~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~--------yLpfil~qi 900 (1233)
T KOG1824|consen 833 DSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK--------YLPFILEQI 900 (1233)
T ss_pred hhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh--------HHHHHHHHH
Confidence 56777777777777664221 122344567788999999999999999999999755321 466677766
Q ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017651 212 NERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (368)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 290 (368)
... +.-+.-.+..|-.+.... ..........+...|.+-.....+..+.-.+.||+.|+..+++. +++.
T Consensus 901 ~sq--pk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Llpk 970 (1233)
T KOG1824|consen 901 ESQ--PKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPK 970 (1233)
T ss_pred hcc--hHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHH
Confidence 332 222333333333333221 11111112233333333334445667888999999999887766 5889
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (368)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~ 365 (368)
|-..+.++.+..|..++.++--.....+.-.+.++. ..+..++.+++++ +..||+.|..++.-.+-+.|.-|.
T Consensus 971 L~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 971 LKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred HHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHH
Confidence 999999999999998888887776666655554444 5677888999999 999999999999888777776554
No 100
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0004 Score=64.16 Aligned_cols=233 Identities=15% Similarity=0.158 Sum_probs=151.0
Q ss_pred HHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHH----Hh
Q 017651 76 LPAMVAGV----WSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTN----IA 146 (368)
Q Consensus 76 i~~l~~~l----~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~----l~ 146 (368)
++.++..| ...++..+...+.=+.-+-+ .|..+.+- -..+++-|..+|.++. ++++..+-.++.+ |.
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHh
Confidence 44444444 45677777766666665543 33443322 2456778889999888 8998776665555 44
Q ss_pred cCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHH---H
Q 017651 147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN---A 223 (368)
Q Consensus 147 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~---a 223 (368)
+. |... --...++.++.-+.++++.++..|+.-+..+..-.+.. -...-.|++..++.++...+...+... .
T Consensus 241 s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 241 SS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred cC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 32 2221 11246789999999999999998887776665443321 123345566777777733332223222 2
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchH
Q 017651 224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303 (368)
Q Consensus 224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~ 303 (368)
-..+..++.............++..+.+.+.++..+.+..++.-+..+-...+... ......+++.|+.-|++++..+.
T Consensus 316 n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~vv 394 (675)
T KOG0212|consen 316 NGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEVV 394 (675)
T ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHHH
Confidence 22344555443222223446789999999999999999999888877776555442 23334788999999999999999
Q ss_pred HHHHHHHHHhhcCCh
Q 017651 304 IPALRTVGNIVTGDD 318 (368)
Q Consensus 304 ~~a~~~l~nl~~~~~ 318 (368)
..++..++++|....
T Consensus 395 l~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 395 LLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999998654
No 101
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=8.8e-05 Score=70.94 Aligned_cols=188 Identities=20% Similarity=0.230 Sum_probs=123.7
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
+...+...+++.+ +.+|..++-+..++-..+ .+.+...|.++.|.+++.++++.+...|+.+|..|....+..-..
T Consensus 122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3567778888888 899999999999887743 456778899999999999999999999999999998665431111
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 277 (368)
.+..-.+..++..+ +.-....-+..+-.++...|... .....++..+...|++.++.+...+...+.++...-..
T Consensus 198 ~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 198 ELNPQLINKLLEAL----NECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred cccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 11222344444444 22223334445555555555444 33346777788888888888888888888888765444
Q ss_pred HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
... .+-..+-+.++.++++.. .++.-|++-+.-+...
T Consensus 273 ~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 273 VNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred HHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 222 222245555666666555 6666666555555443
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0016 Score=64.54 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhhcCCCCCchH-----HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHH
Q 017651 90 LQLEATTQFRKLLSIERSPPIE-----EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 164 (368)
Q Consensus 90 ~~~~a~~~l~~l~s~~~~~~~~-----~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 164 (368)
-..-++.+|+++++.. |... +..--|..+.++.++....++.++..|+.++..++. +.++...+...|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 4566889999998864 3222 223357788888888876658999999999988777 7899999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
|+.+|.+ -+..++.++.+|..++... +......++|++..+..++....+++.+..++..+..+.-.+
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 9998875 4678999999999999876 456777888999999999978888888999999999988776
No 103
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.09 E-value=4.6e-06 Score=53.64 Aligned_cols=55 Identities=38% Similarity=0.684 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 187 (368)
|.+|..|+|+|++++...++...... ..+++.|+.+|.++++.|+..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999998876555555543 46899999999999999999999999986
No 104
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0029 Score=57.06 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=170.7
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC----CCC----chHHHHhcCcHHHHHHhhcCCC-----CHHHHHHHH
Q 017651 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIE----RSP----PIEEVIQSGVVPRFVEFLMRED-----YPQLQFEAA 139 (368)
Q Consensus 73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~i~~g~i~~Lv~lL~~~~-----~~~v~~~a~ 139 (368)
+.+++.++.+|.+++.++-...+..+..+...+ ..+ .++.+++.++++.|++-+..-+ ...-...++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 467888999999999999888888888886542 111 2466789999999999887543 123445667
Q ss_pred HHHHHHhcCCCcchHHHhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----c
Q 017651 140 WALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----E 213 (368)
Q Consensus 140 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----~ 213 (368)
.++-|+..-.+.....+++.|.+..|+.-+.. +...-...|..+|+-+..++.+.+..+...+++..+++.+. +
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 78888888778888888888988888875543 44566778888888888888778888888889999998874 1
Q ss_pred c----cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCC
Q 017651 214 R----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGV 287 (368)
Q Consensus 214 ~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~ 287 (368)
+ +..+...+...+|+.+.....+........++....-+++. ....+..++.+|-+...+++ +....+++..+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 2 13455666666666666654444444445566555555544 45677889999999988876 66677888777
Q ss_pred hHHHHHhc-CCCC---------cchHHHHHHHHHHhhc
Q 017651 288 CPRLVELL-GHPS---------PSVLIPALRTVGNIVT 315 (368)
Q Consensus 288 ~~~L~~lL-~~~~---------~~v~~~a~~~l~nl~~ 315 (368)
+..+..+. +.+. ...-+..+.+|+.+..
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 77766654 3322 2344667777776654
No 105
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0024 Score=55.46 Aligned_cols=283 Identities=13% Similarity=0.149 Sum_probs=186.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF--VEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~L--v~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
.++.++..+-.+|.++-..|...+..+... +.....+++++....+ ..+--..+ .-.|......+..|.+-+++.
T Consensus 129 ilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPES 205 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHH
Confidence 467777788888888888888888887542 3445556666665544 22222333 477888889999999988888
Q ss_pred hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHh
Q 017651 153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNF 230 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l 230 (368)
...+-..|.+..|..-|+. .+.-+.-.++.....++... ..++.+.+.|.|+.+.+.+...+ ++--.-.++..+..+
T Consensus 206 aneckkSGLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 8889999999999988886 66777888999999998654 35677888888999988884322 222222233333333
Q ss_pred hcCCC----CC--ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC--hHHHH-HhcCCCCcc
Q 017651 231 CRGKP----QP--PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLV-ELLGHPSPS 301 (368)
Q Consensus 231 ~~~~~----~~--~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--~~~L~-~lL~~~~~~ 301 (368)
..... .+ .....-..+....+++..+|+..+..|..+++.+-+.... .+.+.+.|- ..+++ +........
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnaha 363 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHA 363 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccc
Confidence 32210 11 1111123444556677889999999999999988776443 366666653 33333 333444455
Q ss_pred hHHHHHHHHHHhhcCCh-------------HHHHHHHHc-------CChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651 302 VLIPALRTVGNIVTGDD-------------FQTQCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 361 (368)
Q Consensus 302 v~~~a~~~l~nl~~~~~-------------~~~~~~~~~-------g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 361 (368)
-+..+++++.+|+.... ..+..+++. .-+..+..+++.+ .++++-.+..++..+++...
T Consensus 364 kqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPW 442 (524)
T KOG4413|consen 364 KQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPW 442 (524)
T ss_pred hHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcH
Confidence 67888999999885321 111222221 3466677888888 89999999988888887544
Q ss_pred HH
Q 017651 362 DQ 363 (368)
Q Consensus 362 ~~ 363 (368)
-+
T Consensus 443 al 444 (524)
T KOG4413|consen 443 AL 444 (524)
T ss_pred HH
Confidence 33
No 106
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00071 Score=62.60 Aligned_cols=269 Identities=12% Similarity=0.130 Sum_probs=163.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
++.|+++|..+.++++..+-.++..++..-++.+.. +--...++.++.-+.+++ +.+|..|+.-+..+..-.+ ..-.
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s-~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g-~~~l 286 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS-MDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPG-RDLL 286 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc-cCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCC-cchh
Confidence 567788888888888866655555544321111111 112345788888888888 9999999877777776322 2222
Q ss_pred HhhCCChHHHHHhhCCCCH-HHHHHHHHH---HHHhhCCChhhHHHHHhcC-ChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651 156 VIDHGAVPIFVKLLASPSD-DVREQAVWA---LGNVAGDSPRCRDLVLSQG-ALIPLLAQLNERAKLSMLRNATWTLSNF 230 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~---L~nla~~~~~~~~~i~~~~-~i~~l~~~l~~~~~~~~~~~a~~~L~~l 230 (368)
..-.|++..++.++.+..+ .+++.+... |..+.... ..... ++.| .++.+.+.+ .++..+.+..++.-+..|
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYL-SDDREETRIAVLNWIILL 363 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHH
Confidence 2334677777777776554 355444333 23333221 11111 3333 456666666 677777777777666666
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
-...|..-......+++.|+.-|.+.+.+|...++..++++|..+... .. -.++..|++....+..-+...+-.++
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~lII 439 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNLII 439 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhHHH
Confidence 665566666666889999999999999999999999999999765432 00 11233344444555455566666777
Q ss_pred HHhhcC-ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651 311 GNIVTG-DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 311 ~nl~~~-~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
-.+|.- +++ .+...+..+|...++-.....-..+|.++.-.++|
T Consensus 440 RqlC~lL~aE--------~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTStE 484 (675)
T KOG0212|consen 440 RQLCLLLNAE--------RIYRSIADILEREENLKFASTMVQALNTILLTSTE 484 (675)
T ss_pred HHHHHHhCHH--------HHHHHHHHHHhccccchHHHHHHHHHHhhhcccHH
Confidence 776642 121 23444555565554556666666666666655554
No 107
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.99 E-value=0.00023 Score=61.22 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=146.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHHHhhC-CC
Q 017651 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDH-GA 161 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~ 161 (368)
+=++-.+..|+.++.++... .+.+..+. +..+-..+++++++.- ..++|..++.+++-++. ++++.+.+-+. ..
T Consensus 160 ~i~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dl 236 (432)
T COG5231 160 LIDFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 33455677777777777542 23333333 4456677888887632 16899999999999888 46665443332 35
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccc--cchhHHHHHHHHHHH--------
Q 017651 162 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNER--AKLSMLRNATWTLSN-------- 229 (368)
Q Consensus 162 i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~--~~~~~~~~a~~~L~~-------- 229 (368)
+..|+++.+. ....+-+.|+.++.|++..+|. +-....-.|-+.+-++.|... .|+++....-..=+.
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 6666777665 3467888999999999975532 222222333455666666322 244443332221111
Q ss_pred ---------hh----cCCCC-CChh--------h---hhchHHHHHHhhcCCCHH-HHHHHHHHHHHhhcCChHHHHHHH
Q 017651 230 ---------FC----RGKPQ-PPFD--------Q---VRPALPALAQLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVI 283 (368)
Q Consensus 230 ---------l~----~~~~~-~~~~--------~---~~~~~~~L~~lL~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~ 283 (368)
|- .+.|. .... . .-.++..|.++++.+++. ...-||.-+..+....++....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11 11111 0000 0 024667888888887665 566688888888888888888899
Q ss_pred HcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
+.|+=..++.+++|++++++-.|+.++..+.+
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999887654
No 108
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0022 Score=63.64 Aligned_cols=260 Identities=17% Similarity=0.209 Sum_probs=165.0
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 74 ESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 74 ~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
..++-+...+. ..++.++..|+..+..+.+. .++...+..+|.+..|+.+|-+. |..|..++..|..+++ +++.
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~i 1845 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQI 1845 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcHH
Confidence 44555666665 46778899999888877653 68888999999999999999764 6899999999999999 5788
Q ss_pred hHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---hhhHHHHHhc---C-------ChHHHHHHhcc-----
Q 017651 153 TKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDS---PRCRDLVLSQ---G-------ALIPLLAQLNE----- 213 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~---~~~~~~i~~~---~-------~i~~l~~~l~~----- 213 (368)
.....+.|++..+..++. +.++..+.+++..++.+..+. |..+-.++.. + .-+..+..+..
T Consensus 1846 ~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnP 1925 (2235)
T KOG1789|consen 1846 GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENP 1925 (2235)
T ss_pred HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCc
Confidence 888888899888888665 466888999999999886542 2211111100 0 00111111100
Q ss_pred --------------------------------------------------------------------------------
Q 017651 214 -------------------------------------------------------------------------------- 213 (368)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (368)
T Consensus 1926 ELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LL 2005 (2235)
T KOG1789|consen 1926 ELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELL 2005 (2235)
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHH
Confidence
Q ss_pred ----------ccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651 214 ----------RAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (368)
Q Consensus 214 ----------~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 282 (368)
++......-...++..|.+..|.... .---|.+|.++..+...+..+-..++..|..|+.+ .-..+.+
T Consensus 2006 ek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AM 2084 (2235)
T KOG1789|consen 2006 EKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAM 2084 (2235)
T ss_pred HHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHH
Confidence 00011111122222222222211111 11134556666555555555557788888888876 3445677
Q ss_pred HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhCCC
Q 017651 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
.....+..++..+... +...-.|+.+|-.+... .++.....+..|++|+|+.+|...
T Consensus 2085 A~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 7777777788877543 34455788888888653 345555677889999999999754
No 109
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.95 E-value=0.00062 Score=68.25 Aligned_cols=233 Identities=17% Similarity=0.131 Sum_probs=147.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCC-CCchHH-HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC--
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEE-VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-- 150 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~-~~~~~~-~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~-- 150 (368)
.+|.++.++..+...+|..|+..|..++..-+ -++.+. +...-++|.|-.++.+.+...+|..-+.+|+.+|..-.
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence 47888889999999999999999999876432 233333 44566788898988874434566665666666554210
Q ss_pred -cchHHHhhC-------------------------CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 017651 151 -ENTKVVIDH-------------------------GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 204 (368)
Q Consensus 151 -~~~~~~~~~-------------------------g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i 204 (368)
+....+-.+ ++=.....+|.++.+-|+...+..|+-||..-- ..-.+.-.+
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~ksND~iL 619 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEKSNDVIL 619 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hcccccchH
Confidence 011111111 112333445555555666655555555552100 000011146
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 205 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
+.|+..| .+.|..++....-.+.-+|-.-. .....+.++|.|.+-|.+..+.|...|+.+|.-|+...--....++
T Consensus 620 shLiTfL-NDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~- 695 (1431)
T KOG1240|consen 620 SHLITFL-NDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK- 695 (1431)
T ss_pred HHHHHHh-cCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-
Confidence 6777777 56677776666666655543311 1123356889999999999999999999999999965432222233
Q ss_pred cCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651 285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 285 ~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.+++....+|-+++.-+|..++.+|..++.
T Consensus 696 -~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 696 -DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999998874
No 110
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0037 Score=60.24 Aligned_cols=139 Identities=21% Similarity=0.205 Sum_probs=89.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 017651 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 203 (368)
Q Consensus 124 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~ 203 (368)
++..++. +-||..|+.++..+-+-.++....+ +..+-.+|.+.++-|.-.|+.++-.+|-+.- +.+ ++-
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 3444555 8899999999998887666666544 3455667888888888899999888885532 222 224
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhchHHHHHHhhc
Q 017651 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF----------------------------DQVRPALPALAQLVH 254 (368)
Q Consensus 204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~~~~L~~lL~ 254 (368)
...+.++| .+-++--+..+..+|...|+.. +.+.. .-..-++...-.+|+
T Consensus 219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 66677776 4444555566667777777654 22211 001223444555667
Q ss_pred CCCHHHHHHHHHHHHHhhcC
Q 017651 255 SNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 255 ~~d~~v~~~a~~~l~~l~~~ 274 (368)
+.++.|...++.++.+++..
T Consensus 298 S~n~sVVmA~aql~y~lAP~ 317 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPK 317 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCH
Confidence 77788888888888877743
No 111
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00066 Score=58.28 Aligned_cols=228 Identities=16% Similarity=0.140 Sum_probs=142.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
...++.++.+.+ |.++..|+..+..++.. ..+.+.. .-.++.+.+++....+ .+.|+.+|.|++.+. ..++
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHH
Confidence 446889999998 99999999999998885 2222222 2467889999987666 788999999999885 5778
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--h-----hchHHHHHHhhcCC-C-HHHHHHHHHH
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ--V-----RPALPALAQLVHSN-D-EEVLTDACWA 267 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~-----~~~~~~L~~lL~~~-d-~~v~~~a~~~ 267 (368)
.+++. ++..++..+ .++.......+|..++|+++.+....... . .+++.....+..++ + ..-..+.+..
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 87776 666777777 55556677889999999998753211111 0 23333333333332 1 1235667778
Q ss_pred HHHhhcCChHHHHHHHHcCC--hHHHHHhcCCCCcch-HHHHHHHHHHhhcCChHHHHHHHHc--CChHHHH--------
Q 017651 268 LSYLSDGTNDKIQAVIEAGV--CPRLVELLGHPSPSV-LIPALRTVGNIVTGDDFQTQCIITY--GALPYLL-------- 334 (368)
Q Consensus 268 l~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~~~~~v-~~~a~~~l~nl~~~~~~~~~~~~~~--g~l~~l~-------- 334 (368)
+++|+.....+ ..+.+... ...++.+ .+.+..+ +...+++|-|.|.....+-. +++. .++|.++
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence 88888765554 33433332 2223333 3333344 45677888888765553332 3221 2333332
Q ss_pred -------------HhhCCC----CCccHHHHHHHHHHHHhc
Q 017651 335 -------------GLLTHS----HKKSIKKEACWTISNITA 358 (368)
Q Consensus 335 -------------~ll~~~----~~~~v~~~a~~~l~nl~~ 358 (368)
+.|..+ .++.+|+.-.-+|.-+|+
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca 273 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA 273 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh
Confidence 333211 167899998888888887
No 112
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.89 E-value=0.00015 Score=67.62 Aligned_cols=259 Identities=19% Similarity=0.235 Sum_probs=156.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCC----CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651 81 AGVWSDDSSLQLEATTQFRKLLSIER----SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 81 ~~l~~~~~~~~~~a~~~l~~l~s~~~----~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
+.|...++++.-..+.++..+.+..+ .|++ .|++|.|...|++.+ ..++...+..++.|+...++....-
T Consensus 653 E~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi-----~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~r 726 (975)
T COG5181 653 ENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPI-----SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVR 726 (975)
T ss_pred HhcCcccHHHHHHHHHHHHHHhhhhcccccCCch-----hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHH
Confidence 34445566665555555555544321 2333 577999999999988 7999999999999998666633221
Q ss_pred hhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch-hhHHHHH----------------------h-cCC---hHHHH
Q 017651 157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SP-RCRDLVL----------------------S-QGA---LIPLL 208 (368)
Q Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~-~~~~~i~----------------------~-~~~---i~~l~ 208 (368)
-.--+---|+..|.+.+.+++..|..++|.|+.- .| ..-+.++ + +|. +|.|+
T Consensus 727 EWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm 806 (975)
T COG5181 727 EWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLM 806 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHH
Confidence 1112334577888889999999999999988742 11 1111111 1 121 22222
Q ss_pred HHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH--HHHHHHcC
Q 017651 209 AQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK--IQAVIEAG 286 (368)
Q Consensus 209 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~ 286 (368)
.-. ..++..++.-++.+++.+.+.........+..+.|.|-+.|.+.|+.-+..|...+..|+-+.+.. .+.++.
T Consensus 807 ~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH-- 883 (975)
T COG5181 807 SDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH-- 883 (975)
T ss_pred hcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--
Confidence 222 234556666677777766665444444555667788888888889999999999999998664422 222221
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG-ALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g-~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++..|..-+-.++|.+.......+-.++. ++..| +..++.+-|-|+ ...+| .+-|+..|+..
T Consensus 884 LlNllwpNIle~sPhvi~~~~Eg~e~~~~--------~lg~g~~m~Yv~qGLFHP-s~~VR-k~ywtvyn~my 946 (975)
T COG5181 884 LLNLLWPNILEPSPHVIQSFDEGMESFAT--------VLGSGAMMKYVQQGLFHP-SSTVR-KRYWTVYNIMY 946 (975)
T ss_pred HHHHhhhhccCCCcHHHHHHHHHHHHHHH--------HhccHHHHHHHHHhccCc-hHHHH-HHHHHHHhhhh
Confidence 12222222345667776665555555442 11122 245556666676 55555 56788877764
No 113
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.89 E-value=3.6e-05 Score=45.97 Aligned_cols=39 Identities=36% Similarity=0.664 Sum_probs=35.1
Q ss_pred HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 319 ~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+....+.+.|+++.|+.++.++ ++.+++.|+|+|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 3667788999999999999987 99999999999999973
No 114
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.89 E-value=3.1e-05 Score=46.26 Aligned_cols=40 Identities=38% Similarity=0.744 Sum_probs=36.1
Q ss_pred CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 017651 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 189 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~ 189 (368)
++.+..+++.|+++.|+.++.+++++++..++|+|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467788899999999999999999999999999999973
No 115
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.88 E-value=7.2e-05 Score=53.96 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 017651 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (368)
Q Consensus 134 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~ 200 (368)
++...+.+|+|++..++..++.+.+.|++|.++.... +.+|.+++.|+|++.||+.++++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4677889999999999999999999999999998554 578999999999999999999998777664
No 116
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.88 E-value=0.0026 Score=59.77 Aligned_cols=233 Identities=15% Similarity=0.135 Sum_probs=156.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCCCcchHHHhhC
Q 017651 84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQFEAAWALTNIASGTSENTKVVIDH 159 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 159 (368)
...++....+|+++|.|++-.. ....+.+++.|+.+.++..|+.. .++++.....++|.-++...+..+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567889999999999998764 44456678999999999999876 127999999999999998778777776654
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-------
Q 017651 160 -GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER------- 214 (368)
Q Consensus 160 -g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~------- 214 (368)
+++..+...|.. .+......++.++.|+..+.+.... -.....+++++.++...
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 677777765531 1345667889999999876554322 12223456666554322
Q ss_pred -cchhHHHHHHHHHHHhhcCCC---------CC---ChhhhhchHHHHHHhhc----C-C---CHHHHHHHHHHHHHhhc
Q 017651 215 -AKLSMLRNATWTLSNFCRGKP---------QP---PFDQVRPALPALAQLVH----S-N---DEEVLTDACWALSYLSD 273 (368)
Q Consensus 215 -~~~~~~~~a~~~L~~l~~~~~---------~~---~~~~~~~~~~~L~~lL~----~-~---d~~v~~~a~~~l~~l~~ 273 (368)
+......++..+|.|+--... .. ........+..|+.+|. . . -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 244567778888887721110 00 00111234555555553 1 1 13678888899999988
Q ss_pred CChHHHHHHHH----------------cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651 274 GTNDKIQAVIE----------------AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 274 ~~~~~~~~~~~----------------~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
.+....+.+.. ..+-..|++++.++.+.++..+...+-.+|..+.
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 76544443322 2456779999988889999999999988886543
No 117
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.0026 Score=53.52 Aligned_cols=203 Identities=21% Similarity=0.291 Sum_probs=134.2
Q ss_pred cCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---
Q 017651 116 SGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--- 191 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~--- 191 (368)
...+|.|+..|...+ .|-+|.+|+.+|+.+.. + +..+.+-++.+++...+++.|..++..+--.+
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 456888888887543 37899999999998873 2 45677778888888899998888887663111
Q ss_pred ------------hhhHHHHHhcCChHHHHHHhccccchhH-HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH
Q 017651 192 ------------PRCRDLVLSQGALIPLLAQLNERAKLSM-LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 258 (368)
Q Consensus 192 ------------~~~~~~i~~~~~i~~l~~~l~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~ 258 (368)
|... ...+-+..+-..|.....+.+ ++.+.+.|.|+-.. ..+..|.+-+..++.
T Consensus 135 ~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSA 201 (289)
T ss_pred cccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchH
Confidence 1110 011123334333422222222 33455656555432 467778888888888
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC--CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 336 (368)
Q Consensus 259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~l 336 (368)
-++..++.+++.|-+. -.++.|.+.|. ...+.+|..|+.+||.++.. ..++.|...
T Consensus 202 lfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~ 259 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEY 259 (289)
T ss_pred HHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHH
Confidence 8999999999888643 23666777763 35689999999999999852 135567777
Q ss_pred hCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651 337 LTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (368)
Q Consensus 337 l~~~~~~~v~~~a~~~l~nl~~~~~~~i~ 365 (368)
+.++ .+-|++.+..+|.-+-..|...++
T Consensus 260 ~~D~-~~vv~esc~valdm~eyens~~~e 287 (289)
T KOG0567|consen 260 LGDE-ERVVRESCEVALDMLEYENSKEFE 287 (289)
T ss_pred cCCc-HHHHHHHHHHHHHHHHHhcccccc
Confidence 7777 788888888888766655544433
No 118
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.84 E-value=0.00012 Score=52.87 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCC-CCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651 302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQ 365 (368)
Q Consensus 302 v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~i~ 365 (368)
.+...+++|+|++..++...+.+.+.|+++.++....- +.+|.+|+-|.|+|.|++.|+++.-+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46778999999999999999999999999999986643 33899999999999999999887644
No 119
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.0064 Score=59.55 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
+..+.+.++++++.+|-.|++.+..+= . ..+ -..+++++.+++.+++ +.||..|+.|+.++-.-+ ...
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~----~---~el-~~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld---~~l 161 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR----V---KEL-LGNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLD---KDL 161 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC----h---HHH-HHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcC---Hhh
Confidence 444555555555555555555555331 0 011 1224666667777766 677777777777766532 344
Q ss_pred HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 017651 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~ 190 (368)
+.+.|.+..+..++.++++.+...|+.+|..+-..
T Consensus 162 ~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 162 YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 55556666677777777777777777777766433
No 120
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.77 E-value=0.022 Score=51.08 Aligned_cols=242 Identities=12% Similarity=0.123 Sum_probs=161.4
Q ss_pred HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH-----HHhhC--CChHHHHHhhCCCCHHHHHHHHHH
Q 017651 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK-----VVIDH--GAVPIFVKLLASPSDDVREQAVWA 183 (368)
Q Consensus 111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~-----~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~ 183 (368)
.++...|++..|+..|..-+ -+.+..++.+.+++.......+. .+... .++..|+.--. ++++.-.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence 34667789999999999888 79999999999999875544432 23322 23444444444 45666677777
Q ss_pred HHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh----hhchHHHHHHhhcCCCHH
Q 017651 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ----VRPALPALAQLVHSNDEE 259 (368)
Q Consensus 184 L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----~~~~~~~L~~lL~~~d~~ 259 (368)
|...+.+. .+...++....+..+.+.+ ..++-++...|..++..+....+...... ...++.....+|.+++--
T Consensus 147 lRec~k~e-~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 147 LRECIKHE-SLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHTTSH-HHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHhhH-HHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 77777774 4566777777888888888 77888899999999988665432221111 245677888899999999
Q ss_pred HHHHHHHHHHHhhcCChHH---HHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh---HHHHHHHHc--CChH
Q 017651 260 VLTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD---FQTQCIITY--GALP 331 (368)
Q Consensus 260 v~~~a~~~l~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~~~~--g~l~ 331 (368)
.+..++..|+.+....... ...+-+..-+..++.+|++++..++..|..+.--+++.+. ...+.+... .++.
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 9999999999998654322 2334445678899999999999999999999998887543 333323322 4566
Q ss_pred HHHHhhCCC-CCccHHHHHHHHHHHHh
Q 017651 332 YLLGLLTHS-HKKSIKKEACWTISNIT 357 (368)
Q Consensus 332 ~l~~ll~~~-~~~~v~~~a~~~l~nl~ 357 (368)
.+.++..+. ++.....|=.+.+.-|.
T Consensus 305 fl~~f~~~~~~D~qf~~EK~~li~~i~ 331 (335)
T PF08569_consen 305 FLKDFHTDRTDDEQFEDEKAYLIKQIE 331 (335)
T ss_dssp HHHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCccccHHHHHHHHHHHHH
Confidence 666665554 46666666666665543
No 121
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00073 Score=63.67 Aligned_cols=229 Identities=18% Similarity=0.107 Sum_probs=153.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCC----CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER----SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~----~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
+...++.+..++.+++..|++.+.-+..... ....+.=....++..+++.+++.+ ..+|.+|+.+|+.+-.-+++
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~s-l~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRS-LSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCc-eeeeehHHHHhchHHHhHHH
Confidence 6677778888888888888666553322110 011111112335667777777776 67888888777765433222
Q ss_pred ch--------------------------------------------------HHHhhCCChHHHHHhhCCCCHHHHHHHH
Q 017651 152 NT--------------------------------------------------KVVIDHGAVPIFVKLLASPSDDVREQAV 181 (368)
Q Consensus 152 ~~--------------------------------------------------~~~~~~g~i~~L~~lL~~~~~~v~~~a~ 181 (368)
.. ..++..|+--.++.-|.++-.+|+..|.
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence 11 2245556667777777777889999999
Q ss_pred HHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHH
Q 017651 182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 261 (368)
Q Consensus 182 ~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~ 261 (368)
..++.|+..+|.+... .+.-|++++ ++....++-.+..+|..++.. ...-+..++.+...|.+.+++++
T Consensus 395 ~Sl~~La~ssP~FA~~-----aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 395 ASLCSLATSSPGFAVR-----ALDFLVDMF-NDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHHHHcCCCCcHHH-----HHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHH
Confidence 9999999999876443 577889999 888889999999999999866 22335678888999988899999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH
Q 017651 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322 (368)
Q Consensus 262 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 322 (368)
...-..|.+.=-.+.+.+... +..++..|. .-|.-+...+.|++.+.........
T Consensus 464 e~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH~~lv~ 518 (823)
T KOG2259|consen 464 EALRELLKNARVSDLECIDMC-----VAHLLKNLG-KYPQDRDEILRCMGRIGQNHRRLVL 518 (823)
T ss_pred HHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhh-hCCCCcHHHHHHHHHHhccChhhHH
Confidence 888777766544433443322 233333332 2345577888899999887764444
No 122
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.68 E-value=0.00064 Score=60.83 Aligned_cols=211 Identities=13% Similarity=0.097 Sum_probs=146.9
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-----hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-----~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
.+...+.+..|+..|..-+-+.+..+..+.+++...... ..+.+..+ .-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 344557888999999888889999999999999865422 23444443 133444445455577777777777777
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCCCCcchHHHH
Q 017651 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPA 306 (368)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~a 306 (368)
.++...-.........+-.+.+..+.++-++..+|..++.-+..........++.. .++.....+|.+++.-.+..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77664323333335566667788888999999999999999877666666666554 456778889999999999999
Q ss_pred HHHHHHhhcCCh--H-HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCHHHhhhc
Q 017651 307 LRTVGNIVTGDD--F-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQVM 367 (368)
Q Consensus 307 ~~~l~nl~~~~~--~-~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~i~~v 367 (368)
+..||.+..... . -..++-+..-+..++.+|.+. +..++-+|-.++--+.+ ..+..|..|
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~i 294 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDI 294 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHH
Confidence 999999986443 1 123344446789999999999 99999999999988887 455555544
No 123
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.02 Score=56.18 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
.|-+++.+.+.+ .+++.-.-.-|.+++...++ ..+. +++.+.+=+.++++.+|..|+++++.|=.. +.
T Consensus 57 f~dViK~~~trd-~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~~--el---- 124 (757)
T COG5096 57 FPDVIKNVATRD-VELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRVK--EL---- 124 (757)
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcChH--HH----
Confidence 444455555333 56665555555555554441 1111 244455555556666666666666555211 11
Q ss_pred HhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
.. .+++++.+++ .+++..+++.|+.|+..+-+.++... ...|....+..++.+.||.|...|+.++..+.
T Consensus 125 ~~-~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~l~--~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 125 LG-NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKDLY--HELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHhhh--hcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 11 1345555555 55555666666666666554432111 11234444555555556666666665555554
No 124
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0073 Score=60.90 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=153.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 017651 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLV 198 (368)
Q Consensus 122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~~~~i 198 (368)
+.....+.+++.+|..+..+|..++.. +......... .+...|.+-+++.....+...+.+|..|....+ +..+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344444443489999999999999985 3322222211 234455555555666777778888887765444 332333
Q ss_pred HhcCChHHHHHHhccccchhHHHHHHHHHHHhh--cCC----CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFC--RGK----PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
.. .|+.++-.+ ++.+...++.+..+|..++ ... ..+....+..+++.|...+-.+...+....+.++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444444 6678888888888888888 221 22224455667777777765555555555466666666
Q ss_pred cCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHH
Q 017651 273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~ 352 (368)
....+....-.-.+++..+..+|.+.+++++..|+..+..++..-++.+-.-....+++.+..++++. .-.+|+.+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 43322222222235677788888999999999999999999998875544333445788888888777 78888888888
Q ss_pred HHHHhc-CCHHHhh
Q 017651 353 ISNITA-GNRDQIQ 365 (368)
Q Consensus 353 l~nl~~-~~~~~i~ 365 (368)
+--++. -..+.++
T Consensus 893 lekLirkfg~~eLe 906 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHhCHHHHH
Confidence 877775 3444444
No 125
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.57 E-value=0.0077 Score=53.66 Aligned_cols=193 Identities=20% Similarity=0.254 Sum_probs=126.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH---hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--C
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI---QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--T 149 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i---~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~ 149 (368)
.+...+..+.......|..|+..+.+++... ....++ ...++..+.+.++.+. .+-+..|+.+++-++-. .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence 3777788888888999999999999998753 222333 3446788888888887 56677788877777653 3
Q ss_pred CcchHHHhhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHHHH--hcc---------
Q 017651 150 SENTKVVIDHGAVPIFVKLLASPS--DDVREQAVWALGNVA---GDSPRCRDLVLSQGALIPLLAQ--LNE--------- 213 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nla---~~~~~~~~~i~~~~~i~~l~~~--l~~--------- 213 (368)
......+.+ ...|.|...+.+.. ..++..|+.+|+-++ ...+......++ .+..+... ...
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence 344555554 57889999888643 466667777776654 333322121111 23322211 111
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 214 RAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 214 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
.++..+...|+.+.+-|...-+.... ......+|.|..+|.++|.+|+..|-.+|+-|...
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 12356777777666666655443222 33467899999999999999999999999887643
No 126
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0021 Score=61.47 Aligned_cols=212 Identities=19% Similarity=0.204 Sum_probs=105.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--h
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--C 194 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~--~ 194 (368)
|+...|.+.|++.+++.++.-++.-|+-..-++... .+...+-..|..++.-.-+.|..++|-+.-.+.. .
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ea 485 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEA 485 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHH
Confidence 356677788877766778888877776655543321 1234444455554444445555555544322211 0
Q ss_pred HHHHH-------------------------hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHH
Q 017651 195 RDLVL-------------------------SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL 249 (368)
Q Consensus 195 ~~~i~-------------------------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L 249 (368)
-+.+. ..+..++++.-+..+.|+-++.....++.---.+.. ..+.+..|
T Consensus 486 iedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~l 559 (929)
T KOG2062|consen 486 IEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRL 559 (929)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHh
Confidence 00000 111223333333344444444443333321111100 01233333
Q ss_pred HHh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651 250 AQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITY 327 (368)
Q Consensus 250 ~~l-L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 327 (368)
+.. .++.+.+|+..|.-+|+.++..+++. ++..+.+| .+-++.+|.-+..+||-.|++.....
T Consensus 560 Lh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------ 624 (929)
T KOG2062|consen 560 LHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------ 624 (929)
T ss_pred hcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------
Confidence 333 23445667777777777776665554 55566666 34466777777777776666654221
Q ss_pred CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 328 GALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 328 g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.+..|-.+.+++ ..-||+.|+-+++-|.-
T Consensus 625 -Ai~lLepl~~D~-~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 625 -AINLLEPLTSDP-VDFVRQGALIALAMIMI 653 (929)
T ss_pred -HHHHHhhhhcCh-HHHHHHHHHHHHHHHHH
Confidence 244444455555 55677777766666553
No 127
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.035 Score=53.20 Aligned_cols=258 Identities=14% Similarity=0.138 Sum_probs=158.2
Q ss_pred HHHhhcCCC--HHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 79 MVAGVWSDD--SSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 79 l~~~l~~~~--~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
+-+.|-+++ .-++.+|+-+|.++.... + .++ ..+....++++|.+.+ -.+...+...+.-++..+++....
T Consensus 151 I~KlLvS~~~~~~vkqkaALclL~L~r~s-p----Dl~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~yk~ 224 (938)
T KOG1077|consen 151 IPKLLVSGSSMDYVKQKAALCLLRLFRKS-P----DLVNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPESYKT 224 (938)
T ss_pred hHHHHhCCcchHHHHHHHHHHHHHHHhcC-c----cccChhhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHHHhh
Confidence 334555544 456777887887787653 2 122 2345778888888877 577777777777777765554332
Q ss_pred HhhCCChHHHHHhhCC-------------CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhcccc-c----
Q 017651 156 VIDHGAVPIFVKLLAS-------------PSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERA-K---- 216 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~-------------~~~~v~~~a~~~L~nla~-~~~~~~~~i~~~~~i~~l~~~l~~~~-~---- 216 (368)
.+. -++..|..+... +.+=++...+++|.+.-. +++..+..+.+ +++.++......+ .
T Consensus 225 ~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq 301 (938)
T KOG1077|consen 225 CLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQ 301 (938)
T ss_pred hHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchH
Confidence 211 012222222211 456667777777777732 23344555444 4556665553211 1
Q ss_pred -hhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017651 217 -LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (368)
Q Consensus 217 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL 295 (368)
...+..+++-.-+|+..- ......+...+..|.++|.+..+.++.-++...+.|+...... +.+-.+ .+.++..|
T Consensus 302 ~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sL 377 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSL 377 (938)
T ss_pred hhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHh
Confidence 223333444444555442 3333455678889999999999999999999999999774433 444444 67788888
Q ss_pred C-CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 296 G-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 296 ~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
+ ..+..+|..|+..|..+|-.+. .+.+ +.-+++.|.+- ++.+|++.+.-++-++
T Consensus 378 kterDvSirrravDLLY~mcD~~N--ak~I-----V~elLqYL~tA-d~sireeivlKvAILa 432 (938)
T KOG1077|consen 378 KTERDVSIRRRAVDLLYAMCDVSN--AKQI-----VAELLQYLETA-DYSIREEIVLKVAILA 432 (938)
T ss_pred ccccchHHHHHHHHHHHHHhchhh--HHHH-----HHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence 7 7788999999999999986443 3323 33455666666 7788887766555554
No 128
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.45 E-value=0.01 Score=58.18 Aligned_cols=234 Identities=16% Similarity=0.117 Sum_probs=152.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG 202 (368)
Q Consensus 124 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~ 202 (368)
..+.....|.+-..+.|.+...++........+.. .+...+..+ .+..+.++..|+.+++..++.. .... ...+
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~--vl~~-~~p~ 530 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVK--VLLS-LQPM 530 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCce--eccc-cchH
Confidence 33334444777778999998777643332222111 223333333 3445667777777777776322 1111 1223
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV--HSNDEEVLTDACWALSYLSDGTNDKIQ 280 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~ 280 (368)
+++.|+.+. .....++......+|+..|..+|.........+.|.+..++ .++||.|...+-.++-.++... .+ .
T Consensus 531 ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~-~ 607 (1005)
T KOG2274|consen 531 ILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-AN-Y 607 (1005)
T ss_pred HHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hh-h
Confidence 556666666 56678888899999999999887777766677888766655 4678888777777776666421 11 1
Q ss_pred HHHHcCChHHHHHhcCCCC----cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHH
Q 017651 281 AVIEAGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356 (368)
Q Consensus 281 ~~~~~~~~~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl 356 (368)
.-...-.+|.++..|..+. .....-|+.+|.-+..+.+.-....+-.-++|.+.++.-|+++..+-..+.-||..+
T Consensus 608 g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 608 GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL 687 (1005)
T ss_pred cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence 1222357899999997765 567778888888777665433333333467888888877776888889999999999
Q ss_pred hcCCHHHhh
Q 017651 357 TAGNRDQIQ 365 (368)
Q Consensus 357 ~~~~~~~i~ 365 (368)
...+++|+-
T Consensus 688 Is~~~eq~~ 696 (1005)
T KOG2274|consen 688 ISVTLEQLL 696 (1005)
T ss_pred HhcCHHHHH
Confidence 998888864
No 129
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.022 Score=56.56 Aligned_cols=266 Identities=15% Similarity=0.123 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHhhcCC-CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHH
Q 017651 88 SSLQLEATTQFRKLLSIE-RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (368)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (368)
+....-|++.+..+.+.= +..+.....+.=+++.++..++++- --+|..|||.++.+++-+ ......-..++....
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~ 508 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSID--FKDPNNLSEALELTH 508 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHH
Confidence 334444555555544311 1333333444445677777888877 689999999999999632 232223234677777
Q ss_pred HhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHhccccchhHHHHHHH-HHHHhhcCCCCCChhhh
Q 017651 167 KLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATW-TLSNFCRGKPQPPFDQV 242 (368)
Q Consensus 167 ~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~ 242 (368)
+.|. +.+-.|+-.|+.||..+..+.+.....+..+ +.++.|+.+. +..+.+....+.. .+..++..-..-.....
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 7777 7778899999999999988776443333331 1233444444 2222233333332 22233322122222333
Q ss_pred hchHHHHHHhhcC---CC---HHHHHHHHHHHHHhhc------CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 243 RPALPALAQLVHS---ND---EEVLTDACWALSYLSD------GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 243 ~~~~~~L~~lL~~---~d---~~v~~~a~~~l~~l~~------~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
..+.....++++. .+ .+=...|.++|.-+.. ..++.... ++..+++.+-..|.+.-.++-+.++.++
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566667777764 11 2223334444443321 11222111 2223445555556666667777888887
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCH
Q 017651 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNR 361 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~ 361 (368)
.+++....+..-.++ |+++.+..++... ..+.-.+.+-+|.|+.. |++
T Consensus 667 ~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 667 SSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred hhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCch
Confidence 777665542222222 4667777777666 55666677777777664 444
No 130
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0049 Score=57.50 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651 85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
+.-..+.+++++.+..+.... ....++ ...+..|-.+|+++. ...|..|+++|..++...|+
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~n---v~~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEEN---VGSQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred CcchhhhHHHHHHHHHHHHhc---cCHHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCc
Confidence 344778888888888764322 111222 224778888899988 89999999999999986554
No 131
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.39 E-value=0.00059 Score=49.25 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC
Q 017651 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299 (368)
Q Consensus 220 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 299 (368)
+..++++|...+..-+.........++|.++..+.++|+.|+..||.+|.+++....+..-. .=..++..|.+++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence 34567777777776655555566789999999999999999999999999999654332211 11367888899999999
Q ss_pred cchHHHHHHHHHHh
Q 017651 300 PSVLIPALRTVGNI 313 (368)
Q Consensus 300 ~~v~~~a~~~l~nl 313 (368)
+.++..| ..+-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9888766 444443
No 132
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.36 E-value=0.012 Score=46.12 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=97.5
Q ss_pred hHHHHHhcCChHHHHHHhccccc-----hhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHH
Q 017651 194 CRDLVLSQGALIPLLAQLNERAK-----LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACW 266 (368)
Q Consensus 194 ~~~~i~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~ 266 (368)
+...++..||+..|++++..+.. .++...++.++..|-+..-.........++..++..+... |..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 45678888999999999965553 4778888899999888742222233356777777777543 6889999999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 267 ~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
.|-+++..++.....+-+.=-++.|+.+|..+++.++..|+..+-.+....+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999888877777766679999999999999999999999988865544
No 133
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.12 Score=52.13 Aligned_cols=194 Identities=18% Similarity=0.154 Sum_probs=114.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+..|+..+.+.|..++-.|+..+.++.+.- | . .+ ...++...++++...+++..=..|+-+|+.++...--.-.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~-~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P-EL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H-HH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4677888888999999999999999998754 2 1 11 1234666666666544345566888999999874221111
Q ss_pred HHhhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHHhccccchhHHHHHHH
Q 017651 155 VVIDHGAVPIFVKLLA--------SPSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATW 225 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nla~~~~~~-~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~ 225 (368)
.+. .++|.++.-|. +....||+.|+++++.++.-.... -+.+... ....|+..---+.+...++.|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHH
Confidence 111 24566665543 234689999999999998543221 1111111 22222222114567788888888
Q ss_pred HHHHhhcCCCCC----Chhh-----------------------hh----chHHHHHHh-hcCCCHHHHHHHHHHHHHhhc
Q 017651 226 TLSNFCRGKPQP----PFDQ-----------------------VR----PALPALAQL-VHSNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 226 ~L~~l~~~~~~~----~~~~-----------------------~~----~~~~~L~~l-L~~~d~~v~~~a~~~l~~l~~ 273 (368)
++.......++. .... .. .++..++.- +.+-|..++..++++|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 877554332111 0000 01 122222222 456789999999999999876
Q ss_pred CCh
Q 017651 274 GTN 276 (368)
Q Consensus 274 ~~~ 276 (368)
..+
T Consensus 574 ~~p 576 (1133)
T KOG1943|consen 574 TEP 576 (1133)
T ss_pred hhH
Confidence 543
No 134
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.03 Score=54.35 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=136.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
-+|.+++.+.+.+.+++...-..|..++.. .+....+ -|..|-+-|.+++ +.+|--|+++|+.|--.
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALL----SIntfQk~L~DpN-~LiRasALRvlSsIRvp------ 138 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALL----SINTFQKALKDPN-QLIRASALRVLSSIRVP------ 138 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceee----eHHHHHhhhcCCc-HHHHHHHHHHHHhcchh------
Confidence 478888888888888888777777767543 2222211 3778888899998 88888887777765431
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
++..-++-.+-+...+..+.||..|+.|+-.+-.-.++..+.+. +.+-.+| .+.++.+.-.|+.++..+|-.
T Consensus 139 -~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LL-aD~splVvgsAv~AF~evCPe- 210 (968)
T KOG1060|consen 139 -MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLL-ADRSPLVVGSAVMAFEEVCPE- 210 (968)
T ss_pred -hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHh-cCCCCcchhHHHHHHHHhchh-
Confidence 11111123333455678899999999999999776666555433 3333444 788899999999999998844
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---hHHHHH----------------------HHHc---C
Q 017651 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT---NDKIQA----------------------VIEA---G 286 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~---~~~~~~----------------------~~~~---~ 286 (368)
....+.+-...+..+|-.-|+.-+..++..|...+... +..... ..+. -
T Consensus 211 ---rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l 287 (968)
T KOG1060|consen 211 ---RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL 287 (968)
T ss_pred ---HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence 23444555566666665555444555555555444320 000000 0000 0
Q ss_pred ChHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 017651 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGD 317 (368)
Q Consensus 287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 317 (368)
++...-.+|.+.++.+...++.+...++..+
T Consensus 288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~ 318 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN 318 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence 2333445556677778888888888877644
No 135
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.32 E-value=0.016 Score=56.88 Aligned_cols=235 Identities=13% Similarity=0.042 Sum_probs=151.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCC-CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651 85 SDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (368)
+..|.+...|.+.+.++.+.. -++... .-++...+..+..+..+.++..|+.+++..++ .+..... ..++++
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~----~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL----QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH----HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHH
Confidence 445777778888888775531 011111 11244555555555546788888888887774 2222222 236788
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhh
Q 017651 164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242 (368)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 242 (368)
.|.++....+.++.-..+.+|+..+.-+|+.... .+..+.|-++.++. ...|+.+...+--++-.+++.. .......
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~ 611 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ 611 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence 8889998888999999999999999888876433 34446666666653 4557777777777777777643 1112223
Q ss_pred hchHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCC
Q 017651 243 RPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGD 317 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~ 317 (368)
..++|.++..++.++ .....-++..|.-+..+.+.-....+-.-+++.+.+.. .+++......+..|+..+....
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 568999999998765 55666667777666655332233333334677777764 6677888899999999998877
Q ss_pred hHHHHHHHHcC
Q 017651 318 DFQTQCIITYG 328 (368)
Q Consensus 318 ~~~~~~~~~~g 328 (368)
.++...--..+
T Consensus 692 ~eq~~t~~~e~ 702 (1005)
T KOG2274|consen 692 LEQLLTWHDEP 702 (1005)
T ss_pred HHHHHhhccCC
Confidence 66554443333
No 136
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.047 Score=54.86 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=127.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 239 (368)
+++..|+..+++.+..++..|+..++.++...|. ...-+ ++...++++....+......+|-+|+.|+... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~Lad~--vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELADQ--VIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHHHH--HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 6788888899999999999999999999988762 22222 67777787755667888999999999999874 2222
Q ss_pred hhhhchHHHHHHhhcCCC--------HHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 240 DQVRPALPALAQLVHSND--------EEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 240 ~~~~~~~~~L~~lL~~~d--------~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
.....++|.+.+-|+.++ ..|+..||.+++.++... +...+.+++.=.-..|...+-+++-.+|..|.-++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 344568888888775432 468888888888777543 23223332221112233334556667777776666
Q ss_pred HHhhcC--C-----------------------hHHHHHHHH-cCChHHHHH-hhC----CCCCccHHHHHHHHHHHHhcC
Q 017651 311 GNIVTG--D-----------------------DFQTQCIIT-YGALPYLLG-LLT----HSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 311 ~nl~~~--~-----------------------~~~~~~~~~-~g~l~~l~~-ll~----~~~~~~v~~~a~~~l~nl~~~ 359 (368)
.-.+.- + ......+-+ .|....+++ ++. |= +..+|..++|+|.++.--
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence 544321 0 001111111 133334433 322 22 778999999999998877
Q ss_pred CHHHhh
Q 017651 360 NRDQIQ 365 (368)
Q Consensus 360 ~~~~i~ 365 (368)
.|+...
T Consensus 575 ~pk~~a 580 (1133)
T KOG1943|consen 575 EPKYLA 580 (1133)
T ss_pred hHHhhc
Confidence 776654
No 137
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.31 E-value=0.0011 Score=47.88 Aligned_cols=90 Identities=20% Similarity=0.142 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC
Q 017651 177 REQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS 255 (368)
Q Consensus 177 ~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~ 255 (368)
+..++.+|..++..-+. ....+-. ++++++..+ .+++..++..+|.+|.|++.............+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~--Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE--ILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH--HHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667777777643322 2222222 789999988 8999999999999999999775444444557788899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 017651 256 NDEEVLTDACWALSY 270 (368)
Q Consensus 256 ~d~~v~~~a~~~l~~ 270 (368)
.|+.|+..| +.|-+
T Consensus 80 ~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 80 PDENVRSAA-ELLDR 93 (97)
T ss_pred CchhHHHHH-HHHHH
Confidence 999887766 44433
No 138
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.28 E-value=0.035 Score=45.28 Aligned_cols=93 Identities=19% Similarity=0.133 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 017651 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 252 (368)
Q Consensus 173 ~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 252 (368)
++.++..++-++|-|+...|..-+. .++.+...| .++++.+++.++.+|+.|......+.. ..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence 4688999999999999877654322 578888888 888999999999999999876422111 2344777788
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC
Q 017651 253 VHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 253 L~~~d~~v~~~a~~~l~~l~~~ 274 (368)
+.++|++|+..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999866
No 139
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.001 Score=60.50 Aligned_cols=264 Identities=21% Similarity=0.183 Sum_probs=138.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC----CCCchHHHHhcCcHHHHH------H-hhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 84 WSDDSSLQLEATTQFRKLLSIE----RSPPIEEVIQSGVVPRFV------E-FLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~----~~~~~~~~i~~g~i~~Lv------~-lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
...++..+..++..+.++..+- .+++.+.-...|.+-... . .-.+.. +..+..++-++.+|.....+.
T Consensus 305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f~~ 383 (728)
T KOG4535|consen 305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAFSN 383 (728)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhhcC
Confidence 3456777777777777764421 122222222222111111 0 011112 455666677777766532111
Q ss_pred hHHHhhCC---ChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651 153 TKVVIDHG---AVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (368)
Q Consensus 153 ~~~~~~~g---~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 228 (368)
. .+| ..+.+.. .=.+.+.-++..|+.+++-+.-+..--.+...-..+...++..+ .+..-..+..++|+++
T Consensus 384 l----pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 384 L----PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLG 458 (728)
T ss_pred C----CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhh
Confidence 0 011 1111111 11223344566777777766655433333333344566677777 5656788899999999
Q ss_pred HhhcCC----CCCChhhh---hchHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC-------ChHHH
Q 017651 229 NFCRGK----PQPPFDQV---RPALPALAQLV---HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG-------VCPRL 291 (368)
Q Consensus 229 ~l~~~~----~~~~~~~~---~~~~~~L~~lL---~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-------~~~~L 291 (368)
|++..- |.+..... ...+..++..- .-+..+|...+..+|+|+...- +.+.+.+ -+..+
T Consensus 459 nITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl----q~i~~~~~~e~~~~~~~~l 534 (728)
T KOG4535|consen 459 NITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL----QPIEKPTFAEIIEESIQAL 534 (728)
T ss_pred hhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH----HHhhhccHHHHHHHHHHhc
Confidence 988642 33322221 11222222222 1234789999999999987431 2122211 11111
Q ss_pred H-HhcCCCCcchHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 292 V-ELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 292 ~-~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
. .......-.++-+||++|||+..+..--.+ .-+-..+++.|..++.+..+..+|-.|+.+|+--.
T Consensus 535 ~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 535 ISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred ccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 1 112334568999999999999986542111 11222456777777765548899999998886544
No 140
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.01 Score=57.99 Aligned_cols=224 Identities=12% Similarity=0.073 Sum_probs=149.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 017651 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (368)
Q Consensus 122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~ 201 (368)
.+..+.++. +.++-.++.-|..+... .+....+...+++..++..|++.++.+--.|+..+..+|.-.|+
T Consensus 732 ai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-------- 801 (982)
T KOG4653|consen 732 AISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-------- 801 (982)
T ss_pred HHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------
Confidence 344444555 67899999999999883 45666677788999999999999998888899988888765443
Q ss_pred CChHHHHHHhccc---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH
Q 017651 202 GALIPLLAQLNER---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 278 (368)
Q Consensus 202 ~~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 278 (368)
..++.+....... ...+.+-.+..++.++.+.-..-.......++........++|...+..++..++++|.-....
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 2566666533211 1234444555777777765433334444566677777888888889999999999998543322
Q ss_pred H-HHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhCCCCCccHHHHHHHHH
Q 017651 279 I-QAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITY---GALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 279 ~-~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
. +.+. .++..++.+. .++++-+|..|+..+..+..+.....-.+... .....+........+..++..|+.++
T Consensus 882 vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 882 VSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 1 1222 2455555555 45678899999999999988776444444322 33444455554443677888888887
Q ss_pred HHHh
Q 017651 354 SNIT 357 (368)
Q Consensus 354 ~nl~ 357 (368)
-.+-
T Consensus 960 eei~ 963 (982)
T KOG4653|consen 960 EEIQ 963 (982)
T ss_pred HHHH
Confidence 6654
No 141
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.0057 Score=59.21 Aligned_cols=215 Identities=14% Similarity=0.076 Sum_probs=144.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.+..|+.+...+.+...+.+..+|..-.+..... ...+++.+...+......--..+++-+++|+++.+...+
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 45677777777777777777777766211211111 122455666655544323346889999999999888888
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
..++..-+++.+-.++..+++.++..++.++.||.-..--+...+.+...=.++........+..+...++.++..+...
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv 657 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV 657 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence 88888777888888888899999999999999998776555555555433333443332445666666677776655544
Q ss_pred CCCCC--hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651 234 KPQPP--FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (368)
Q Consensus 234 ~~~~~--~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 294 (368)
..+.. ..........+..++.+.+.+++...+..+.++.....+....+.....++.+..+
T Consensus 658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 32211 33345677788899999999999999999999776666666666666665555544
No 142
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.016 Score=60.04 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=157.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
||+|.+.-..++..+|..-. .+.+.+-.+....++. .-..++.-|+.-|.+.. ..+|+.+|.+|..+..+.+ ...
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~-sIW~~Li~D~k~~vd~-y~neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~--~~~ 1074 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMT-SIWNALITDSKKVVDE-YLNEILDELLVNLTSKE-WRVREASCLALADLLQGRP--FDQ 1074 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHH-HHHHHhccChHHHHHH-HHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCC--hHH
Confidence 66777666777877765444 4444443321222222 22345666777777777 7999999999999998633 222
Q ss_pred HhhC--CChHHHHHhhCCCCHHHHH---HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----cccchhHHHHHHHH
Q 017651 156 VIDH--GAVPIFVKLLASPSDDVRE---QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWT 226 (368)
Q Consensus 156 ~~~~--g~i~~L~~lL~~~~~~v~~---~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----~~~~~~~~~~a~~~ 226 (368)
+.+. ..-..+++.+.+-.+.+|+ .++.+|+.++........-.....++..++..|- -+.-.++++.++.+
T Consensus 1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence 2221 2334445555554455655 4567777776321111011111113444444442 24567899999999
Q ss_pred HHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh------------cCCh--HHHHHHHH-------c
Q 017651 227 LSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS------------DGTN--DKIQAVIE-------A 285 (368)
Q Consensus 227 L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~------------~~~~--~~~~~~~~-------~ 285 (368)
+..|+...+..-......++|.|......-.+.|..+...=+.+.- .+.+ +.+...+. .
T Consensus 1155 l~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLe 1234 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLE 1234 (1702)
T ss_pred HHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHH
Confidence 9999987654333444567777777766555555433222112211 1111 11111111 1
Q ss_pred CChHHHHHhcCCC-CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHH
Q 017651 286 GVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQ 363 (368)
Q Consensus 286 ~~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~ 363 (368)
..+|.+.++++.. .-..+..+...+.-++........ -.....+..++..+++. ++.+++.-+.+.+.++. ..++|
T Consensus 1235 elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1235 ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCChHH
Confidence 3566666666433 344556666666666542211111 01113566677777887 89999999999999997 67777
Q ss_pred hhhc
Q 017651 364 IQVM 367 (368)
Q Consensus 364 i~~v 367 (368)
.+..
T Consensus 1313 ~qKL 1316 (1702)
T KOG0915|consen 1313 MQKL 1316 (1702)
T ss_pred HHHH
Confidence 7654
No 143
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.19 E-value=0.016 Score=47.29 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-ChHHHHHH
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-ALIPLLAQ 210 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~-~i~~l~~~ 210 (368)
|.+|..++-+++-++...+.. ++ ..++.+...|.++++.+|.+|+.+|..|...+. +.-.| .+..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 789999999999998754432 22 458899999999999999999999999986542 12223 34778888
Q ss_pred hccccchhHHHHHHHHHHHhhcCC
Q 017651 211 LNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 8 8899999999999999999773
No 144
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.18 E-value=0.015 Score=54.47 Aligned_cols=204 Identities=20% Similarity=0.252 Sum_probs=121.5
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhh-cCCCCHHHH----HHHHHHHHHHhcCC
Q 017651 76 LPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQLQ----FEAAWALTNIASGT 149 (368)
Q Consensus 76 i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL-~~~~~~~v~----~~a~~~L~~l~~~~ 149 (368)
+..++.... +.++..+..+++.+.-++..-.... . -.+++..+..-+ ...+ +..+ ...+|+..-+...+
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~-l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---D-LDEFLDSLLQSISSSED-SELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---h-HHHHHHHHHhhhcccCC-cchhHHHHHHHHHHHHHHHHcC
Confidence 445555444 3456777777887777764421111 1 012233343333 1222 2333 33445555544422
Q ss_pred CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--------HHHHHhcC----ChHHHHHHhccccch
Q 017651 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--------RDLVLSQG----ALIPLLAQLNERAKL 217 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~--------~~~i~~~~----~i~~l~~~l~~~~~~ 217 (368)
..... ..+..|+.+|.+ +++...++.+++-|..+.+.+ -..+.... .+|.+++.. ...+.
T Consensus 266 ~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~ 337 (415)
T PF12460_consen 266 HPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADD 337 (415)
T ss_pred CchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH-hhcCh
Confidence 22211 245678888875 778889999999998884333 11222222 456666666 33344
Q ss_pred hHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651 218 SMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293 (368)
Q Consensus 218 ~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 293 (368)
+.+.....+|+.+..+-|.... .....++|.+++.|..+|.+++..++.++..+....++.+..-++ .+++.|++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 4778888999999987664333 234779999999999999999999999999999887655443222 34454443
No 145
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.034 Score=53.68 Aligned_cols=215 Identities=15% Similarity=0.184 Sum_probs=133.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
.+..+..+|.+.+ +.++++|+..|.+++.. +..... +...+++++-. ++-.++-..+.-|..+.... ..
T Consensus 244 ~i~~i~~lL~sts-saV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~---~~ 313 (948)
T KOG1058|consen 244 YIRCIYNLLSSTS-SAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALH---EK 313 (948)
T ss_pred HHHHHHHHHhcCC-chhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhh---HH
Confidence 4677778888776 78888888888877773 332221 23445554432 33444444455555554221 11
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-c------CCCHHHHHHHHHHHH
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-H------SNDEEVLTDACWALS 269 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-~------~~d~~v~~~a~~~l~ 269 (368)
++ .|.+-.+++.| ..+|.++++.++.....|...... ..++..|-+=+ . .++.+.+.....++.
T Consensus 314 -il-~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvssrNv------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 314 -IL-QGLIMDVLRVL-SSPDLDVRSKTLDIALDLVSSRNV------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred -HH-HHHHHHHHHHc-CcccccHHHHHHHHHHhhhhhccH------HHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 11 13455677777 888999999999888888866321 11222222111 1 123567888899999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHH
Q 017651 270 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349 (368)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a 349 (368)
.++..-++... .+++.++.++.+.++......+..+.......+..+..+++ .|+.-+..-....+-+.|
T Consensus 385 ~cav~Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rga 454 (948)
T KOG1058|consen 385 ACAVKFPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGA 454 (948)
T ss_pred HHhhcChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhH
Confidence 99877665543 46889999999888877777777777766666654443333 333333222245789999
Q ss_pred HHHHHHHhcCCH
Q 017651 350 CWTISNITAGNR 361 (368)
Q Consensus 350 ~~~l~nl~~~~~ 361 (368)
.|.++..|.+..
T Consensus 455 lwi~GeYce~~~ 466 (948)
T KOG1058|consen 455 LWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHhhhH
Confidence 999999998765
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.13 E-value=0.043 Score=54.43 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=118.3
Q ss_pred HHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhcCCCH-H
Q 017651 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDE-E 259 (368)
Q Consensus 183 ~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~L~~lL~~~d~-~ 259 (368)
+|.++..+.+.....+++.|++..+...+......++...+...+.|++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45678888888889999999999999999777889999999999999998763333222222222 33334444444 7
Q ss_pred HHHHHHHHHHHhhcCChHH---------HHHH--------------HHcCChHH-HHHhc-CCCCcchHHHHHHHHHHhh
Q 017651 260 VLTDACWALSYLSDGTNDK---------IQAV--------------IEAGVCPR-LVELL-GHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 260 v~~~a~~~l~~l~~~~~~~---------~~~~--------------~~~~~~~~-L~~lL-~~~~~~v~~~a~~~l~nl~ 314 (368)
.-..++..++.+....++. -+.+ .....+.. +..++ .+..+..+..|+|++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 8888888888887642211 0111 11112222 44444 3456788999999999999
Q ss_pred cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
...++....+.+.|+++.+..+-.......++.++.-.+-+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 99888888899999999888776655344555555554443
No 147
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.13 E-value=0.047 Score=49.93 Aligned_cols=171 Identities=19% Similarity=0.107 Sum_probs=119.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChh
Q 017651 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFD 240 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 240 (368)
.+.+..++-+++.+++..+..++..+..+... -..+.+.+.---++.-|..+ .+..=+..|+..+..+...+.. ...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence 33344344455599999999999999988754 45666665433444445333 3455567888888888876422 222
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
.-.+++..++.+..+.+...+..++.+++.++-.+++ .+..+|++..+.+.+.++...+....+.++-.+..... .
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence 3467888999999999999999999999999987764 46788999999999977665688888888888886544 4
Q ss_pred HHHHHHcCChHHHHHhhC
Q 017651 321 TQCIITYGALPYLLGLLT 338 (368)
Q Consensus 321 ~~~~~~~g~l~~l~~ll~ 338 (368)
++++...--++.++.-+.
T Consensus 181 R~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFT 198 (371)
T ss_pred hhhhcCCccHHHHHHhhh
Confidence 444444333555554443
No 148
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=97.12 E-value=0.047 Score=46.71 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh
Q 017651 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211 (368)
Q Consensus 133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l 211 (368)
.....|+.+|.-++--.+..+..+.....+..++++|. ...+.++..++.+|..+..++|.+...+.+.+++..+..++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34566788999988878999999999999999999995 46789999999999999999999999999999999999999
Q ss_pred cccc-chhHHHHHHHHHHHhhcCC
Q 017651 212 NERA-KLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 212 ~~~~-~~~~~~~a~~~L~~l~~~~ 234 (368)
+... +.+++-.++..|.-+....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 6443 7788778887777666543
No 149
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.12 E-value=0.00045 Score=51.22 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=61.7
Q ss_pred ChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 287 VCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 287 ~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
++..|+.+| .+.++.+..-||.-||.++...|.....+-+.|+-..++.++.++ +++||.+|..++.-+...
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 578899999 555788889999999999999998888777889999999999999 999999999999887653
No 150
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.0067 Score=58.75 Aligned_cols=236 Identities=15% Similarity=0.083 Sum_probs=158.1
Q ss_pred HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHH-HHhcCCCcchHHHhhCCChHHHHHhhCCCCHHH-HHHHHHHHHHhh
Q 017651 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALT-NIASGTSENTKVVIDHGAVPIFVKLLASPSDDV-REQAVWALGNVA 188 (368)
Q Consensus 111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~nla 188 (368)
...|..|+...|+.+...+. +..+.....+|. .+.. +.++. ...++.+...+......+ ...++.++.|++
T Consensus 498 ~~~Ik~~~~~aLlrl~~~q~-e~akl~~~~aL~~~i~f--~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 498 AKKIKPGGYEALLRLGQQQF-EEAKLKWYHALAGKIDF--PGERS----YEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred CccccccHHHHHHHHHHHhc-hHHHHHHHHHHhhhcCC--CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 34567788888888887776 677777777777 2322 11111 124555555554332211 236889999999
Q ss_pred CCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--CChhhhhchHHHHHHhhcCCCHHHHHHHHH
Q 017651 189 GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQVRPALPALAQLVHSNDEEVLTDACW 266 (368)
Q Consensus 189 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~ 266 (368)
+.+...|..+...-.++.+-.++ ..+++-.++.++..+.||..++-- ..+......++.....+...++.....++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccc
Confidence 98888888888777777777776 777899999999999999877411 111112345566666666667777788888
Q ss_pred HHHHhhcCChHHHHH-HHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccH
Q 017651 267 ALSYLSDGTNDKIQA-VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 345 (368)
Q Consensus 267 ~l~~l~~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v 345 (368)
++..++......... .--..+...++..+.+.++.++...+.++.|+.....+....++....++.+..+-.-. ....
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~-~a~~ 728 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN-RAPK 728 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh-hhhh
Confidence 887676655555442 22336788889999999999999999999997776666666676666666655544333 4445
Q ss_pred HHHHHHHHHH
Q 017651 346 KKEACWTISN 355 (368)
Q Consensus 346 ~~~a~~~l~n 355 (368)
++.+.-+|+.
T Consensus 729 ~~~~~~~l~~ 738 (748)
T KOG4151|consen 729 REDAAPCLSA 738 (748)
T ss_pred hhhhhhHHHH
Confidence 5555555544
No 151
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.11 E-value=0.0061 Score=59.82 Aligned_cols=191 Identities=19% Similarity=0.141 Sum_probs=129.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-------------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~-------------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 227 (368)
+...|+.+|++ +++-..+..++.-+..|++.. ++.+. ...+|.+++.+ ...+...+..-..+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence 34556666664 334455666666665554432 22222 23677888887 455667778888999
Q ss_pred HHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC---cchH
Q 017651 228 SNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVL 303 (368)
Q Consensus 228 ~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~ 303 (368)
+++..+-|.... .....++|.|++.|.-+|..++..+..++.-+....+.....-+ ..+++.++.+-++++ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence 998876555332 23467889999999999999999999999888755433322222 235677777765555 5789
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
..|+.+++.+..--|...-......++..+...|.++ +.-+|++|..+=.+-.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence 9999999999984443333334446788899999999 8999999998766543
No 152
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.011 Score=56.82 Aligned_cols=245 Identities=15% Similarity=0.176 Sum_probs=138.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC
Q 017651 80 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 159 (368)
Q Consensus 80 ~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 159 (368)
-+.|+++++.++-..++.+.++=. .+ +-..++|.+...|.+.+ +-+|..|..++..|-... +.++.
T Consensus 105 RkDLQHPNEyiRG~TLRFLckLkE---~E-----Llepl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~p- 170 (948)
T KOG1058|consen 105 RKDLQHPNEYIRGSTLRFLCKLKE---PE-----LLEPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLIP- 170 (948)
T ss_pred hhhccCchHhhcchhhhhhhhcCc---HH-----HhhhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhcC-
Confidence 344556666666666665555510 11 11345788888899988 899999999999887731 11111
Q ss_pred CChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--cccchhHHHHHHHHHHHhhcCCCC
Q 017651 160 GAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGKPQ 236 (368)
Q Consensus 160 g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~ 236 (368)
.+-..+-.+| .+.++..++.|.-.|...-. +. ++..+...+. .+-++.++-.+...+...|...|.
T Consensus 171 DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~---Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~ 239 (948)
T KOG1058|consen 171 DAPELIESFLLTEQDPSCKRNAFLMLFTTDP---ER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA 239 (948)
T ss_pred ChHHHHHHHHHhccCchhHHHHHHHHHhcCH---HH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH
Confidence 2223333333 45677778777766655422 11 2333333332 233566666667777777764332
Q ss_pred CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhc
Q 017651 237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~ 315 (368)
. ....+..+..+|++.++.++..|+.+|..++..+... ... ...++.++ +.++..+..-.+.-|..+..
T Consensus 240 ~----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~al-k~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 240 E----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTAL-KAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred H----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHH-HHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 2 1246677778888888888888888888877654322 111 22334443 22333444444444444443
Q ss_pred CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhh
Q 017651 316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQ 365 (368)
Q Consensus 316 ~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~ 365 (368)
.... +++ |.+--++.+|+++ +-++|+.+.-..-.++. .+-+++-
T Consensus 310 ~~~~----il~-~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv 354 (948)
T KOG1058|consen 310 LHEK----ILQ-GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIV 354 (948)
T ss_pred hhHH----HHH-HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHH
Confidence 3222 222 4555567777777 77777777776666664 5655554
No 153
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.037 Score=56.08 Aligned_cols=221 Identities=13% Similarity=0.102 Sum_probs=140.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhc---CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC-cchHHHhhC
Q 017651 84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS---GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-ENTKVVIDH 159 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~---g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~ 159 (368)
++.+..+|.++.+.|..+... +........ .+...|.+-+++.. ...+...+.+|..|....+ +....+..
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k- 738 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPK- 738 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence 345788999999999998764 333333322 23445555555555 5788888899988887544 44444433
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhC--------CChhhHHHHHhcCChHHHHHHhccc--cchhHHHHH-HHHHH
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAG--------DSPRCRDLVLSQGALIPLLAQLNER--AKLSMLRNA-TWTLS 228 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~--------~~~~~~~~i~~~~~i~~l~~~l~~~--~~~~~~~~a-~~~L~ 228 (368)
.|+-++-.++..+...++.+..+|.+|+. +.| .. ..+..++..+... .+....... +-++.
T Consensus 739 -~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~-----~~lnefl~~Isagl~gd~~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 739 -LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--AS-----AILNEFLSIISAGLVGDSTRVVASDIVAIT 810 (1176)
T ss_pred -HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hH-----HHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 34444444487888888888888888772 111 01 1355555555322 122111111 44444
Q ss_pred HhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHH
Q 017651 229 NFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307 (368)
Q Consensus 229 ~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~ 307 (368)
.+.... ..........++..+.-+|.+..++++..|+..+.-++..-++..-......+++.+..+++...-.++..+-
T Consensus 811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444432 3334445567788888888999999999999999999877655433333345788888888877888888888
Q ss_pred HHHHHhhcCC
Q 017651 308 RTVGNIVTGD 317 (368)
Q Consensus 308 ~~l~nl~~~~ 317 (368)
..+-.++...
T Consensus 891 ~LlekLirkf 900 (1176)
T KOG1248|consen 891 LLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHh
Confidence 8888877533
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.06 E-value=0.077 Score=47.33 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=118.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHhccccchhHHHHHHHHHHHhhcC--CCCC
Q 017651 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRG--KPQP 237 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~--~~~~ 237 (368)
+...+..+.+.....|+.++..+.++...... .+.+... ..+..+.+.+++... +-+..++.++.-+|-. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence 33445555566788999999999988755422 2222221 146666777744443 4455666767666654 2344
Q ss_pred ChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHhh---cCChHHHHHHHHcCChHHH--HHhcC----------CCCc
Q 017651 238 PFDQVRPALPALAQLVHSND--EEVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRL--VELLG----------HPSP 300 (368)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~d--~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~~~~L--~~lL~----------~~~~ 300 (368)
....+..+.|.|...+.... +.++..++.+|+-++ ....+.+...++ .+..+ ..+++ .+++
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 55666788899999887653 556666666666554 333333332222 23311 11221 1235
Q ss_pred chHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 301 SVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.+...|+.+.+-|.+.-+. .....++ ..++.|..+|.++ +..||..|.-+|+-|..
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 6899999999988876654 2233333 5689999999999 99999999999887754
No 155
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.021 Score=59.11 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=137.6
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
..|-.|+++-+++-...-+.-|+.-++.|+....+.-+.... -.||.|.++=.+|+..|+.....+..-|..|+...-+
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH
Confidence 346677777776654667888888899888744333333332 4789999999999999999888888888888665544
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-hhhchHHHHHHhhcCCCHHHH---HHHHHHHHHhh
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSNDEEVL---TDACWALSYLS 272 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~L~~lL~~~d~~v~---~~a~~~l~~l~ 272 (368)
...+. +++.|+.-+ .+....+++.+|.+|..|.++.|...+. .+..+...+.+...+-.+.|+ ..++.+|+.++
T Consensus 1035 ~y~ne-Il~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLNE-ILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHH-HHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 556666666 6667899999999999999986543332 223344444444433334454 44666777665
Q ss_pred cCChHHHHHHHHcCChHHHHHhc-----CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651 273 DGTNDKIQAVIEAGVCPRLVELL-----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
-..-+.....-...++..++++| -+.-+++|..++.++..++...+......+- .++|.|+.....-
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP-KLIPLLLNAYSEL 1184 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh-HHHHHHHHHcccc
Confidence 22111111111112344444443 2445789999999999999877654432222 4566666666554
No 156
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.98 E-value=0.031 Score=55.35 Aligned_cols=148 Identities=15% Similarity=0.088 Sum_probs=97.1
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 017651 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (368)
Q Consensus 204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 283 (368)
++.+-.+. .+.+..+....+..+..+.--.+ ....+....|.+...++..++.|+.+..+.+..+-...+..--..+
T Consensus 400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 400 LPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 34443443 55566666666665555543322 2233456788888899999999999999988766544443333455
Q ss_pred HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
....++.+..+-....+.++...++.+-.++.... ..+++...-+.+...+.+. ...+++.|+..+.-++.
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE 547 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence 55677777777766678888888888888876433 2344444455555556665 67788888888887775
No 157
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.11 Score=51.90 Aligned_cols=238 Identities=17% Similarity=0.140 Sum_probs=139.3
Q ss_pred CcHHHHHHhhcC------C-CCHHHHHHHHHHHHHHhcC--CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017651 117 GVVPRFVEFLMR------E-DYPQLQFEAAWALTNIASG--TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187 (368)
Q Consensus 117 g~i~~Lv~lL~~------~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 187 (368)
|+++.+++.|.+ + +++.-+.-|+.+++++++- ...--+..++.-.++.++-.++++.-.++..|||.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 457777777762 2 2366778888999998852 122223444555677777788888899999999999999
Q ss_pred hCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhcCCCHHHHHHH
Q 017651 188 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHSNDEEVLTDA 264 (368)
Q Consensus 188 a~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~L~~lL~~~d~~v~~~a 264 (368)
+...- .+...-..++....+.|..+.+..++..|+-+|..+..+.+.... ..+.+++..|+.+.+.-+.+..+.+
T Consensus 490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 94332 222222236777778885688889999999999999987643322 2334555556666655555555555
Q ss_pred HHHH-HHhhcCChHHHHHHHHcCChHHHHHhcCC---CCc---chHHHHHHHHHHhh---c---CChHHHHHHHHcCChH
Q 017651 265 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLGH---PSP---SVLIPALRTVGNIV---T---GDDFQTQCIITYGALP 331 (368)
Q Consensus 265 ~~~l-~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~---~v~~~a~~~l~nl~---~---~~~~~~~~~~~~g~l~ 331 (368)
+..+ +..+..-....-.+. ..+...+.+++.. .++ +-...|.++|..+. . ..++..+ -++.-+++
T Consensus 568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 5433 233221111111111 1234445555542 122 22333444443332 2 1222222 22335677
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 332 YLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 332 ~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
.+-.+|++. -.++-++++-.+.+++.-
T Consensus 646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~ 672 (1010)
T KOG1991|consen 646 VIGFILKND-ITDFYEELLEIVSSLTFL 672 (1010)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHhhhhhh
Confidence 777777777 778888888888887763
No 158
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.04 Score=53.47 Aligned_cols=260 Identities=16% Similarity=0.158 Sum_probs=138.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH-
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK- 154 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~- 154 (368)
++.+=..+.+....+.++|++++..+-.. ....+.. .+..|-.+++++. +.+|..|.++|..+|...+....
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~----~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNT----NSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhcccc----CHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence 34445566678888999999998877432 2222222 5777888888888 89999999999999985443221
Q ss_pred -------HHhhCC---ChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChh-----hHHHH-----HhcCChHHHHHH
Q 017651 155 -------VVIDHG---AVPIFVKLLASPS----DDVREQAVWALGNVAGDSPR-----CRDLV-----LSQGALIPLLAQ 210 (368)
Q Consensus 155 -------~~~~~g---~i~~L~~lL~~~~----~~v~~~a~~~L~nla~~~~~-----~~~~i-----~~~~~i~~l~~~ 210 (368)
.+-+.+ +...+..+|+... ..+..+.....++|+.+-.. .+... ...+.+.-|.++
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 111111 1233333444322 33444444444555433211 00000 011223333344
Q ss_pred hccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017651 211 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (368)
Q Consensus 211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 290 (368)
|.+...-+..+.+.-++..+....|.... .++..|..++.+. +....+...|+-|-...+.. ......+..
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a---~~Pskyir~ 470 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA---PNPSKYIRF 470 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC---CCcchhhHH
Confidence 43444445555555555555543322111 2333444443322 22233333333333221100 001122333
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
+...+--.+..+|..|+.++.++..+++.... .+.-.+.+++.+. +.++|..|.+.+.++-
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 44443334667899999999999866553222 4555677888888 8999999999999987
No 159
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.92 E-value=0.038 Score=43.42 Aligned_cols=125 Identities=12% Similarity=0.125 Sum_probs=96.5
Q ss_pred hHHHHhcCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCC--CHHHHHHHHH
Q 017651 110 IEEVIQSGVVPRFVEFLMREDY-----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVW 182 (368)
Q Consensus 110 ~~~~i~~g~i~~Lv~lL~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~ 182 (368)
..+++..|++..|++++.++.. .++...++.++..+-.+.--. -..++...|...+.+.+.+ +..+.+.|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs-Wd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS-WDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc-hhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4578889999999999988662 366677778888877753222 2344445677777777653 5899999999
Q ss_pred HHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 017651 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236 (368)
Q Consensus 183 ~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 236 (368)
.|-++...++.....+.+.=-++.|+..| +..+++++.++...+-.|....+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999999887667776665689999999 778999999999999888877543
No 160
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.091 Score=44.56 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=127.2
Q ss_pred ccHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651 74 ESLPAMVAGVW--SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 74 ~~i~~l~~~l~--~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
++++.++..+. ++.+-++.+|..+|..+.. .+.++.+-++.+++- ..++..+..++..+--.+.-
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~------------~~~~~~l~k~~~dp~-~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD------------PESLEILTKYIKDPC-KEVRETCELAIKRLEWKDII 133 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcc------------hhhHHHHHHHhcCCc-cccchHHHHHHHHHHHhhcc
Confidence 46889998887 4567888899999988752 224566667775555 56766666666555331110
Q ss_pred ch----HHH--h------hCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch
Q 017651 152 NT----KVV--I------DHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL 217 (368)
Q Consensus 152 ~~----~~~--~------~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~ 217 (368)
.. ..+ + ..+-+.-+-..|.+.. ..-+..+.+.|.|+-++. .|..|.+-+ ..++.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l-~~~Sa 201 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGL-ADDSA 201 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhc-ccchH
Confidence 00 000 0 1112333444333322 223456777777764432 356667767 55577
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017651 218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (368)
Q Consensus 218 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL 295 (368)
-++..++++|..|-.. ..+|.|.+.|.. ..+-|+..|+.+|+.+++. + .++.|.+++
T Consensus 202 lfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~ 260 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYL 260 (289)
T ss_pred HHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHc
Confidence 8888999999988754 477888887754 4688999999999999853 2 367788889
Q ss_pred CCCCcchHHHHHHHHHHhhc
Q 017651 296 GHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 296 ~~~~~~v~~~a~~~l~nl~~ 315 (368)
.++++-+++.|..++..+-.
T Consensus 261 ~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 261 GDEERVVRESCEVALDMLEY 280 (289)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 88888888887777665543
No 161
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.85 E-value=0.0018 Score=48.07 Aligned_cols=72 Identities=25% Similarity=0.371 Sum_probs=60.3
Q ss_pred chHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651 244 PALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 244 ~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.++..|+.+| .+.|+.+..-||.=|+.++...+.....+-+.|+-..+++++.+++++++..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5778899999 44578889999999999998877776666677999999999999999999999999998764
No 162
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.85 E-value=0.047 Score=49.95 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=121.1
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 76 LPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 76 i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
+..++..+.+. ..+.+..|+..|..+++.. +..+..-.-..++..+++.|.+..++.++..|+++|..++...+.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--- 363 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--- 363 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---
Confidence 44444455433 4677788888899887754 333222112345777888898844488999999999999985332
Q ss_pred HHhhC--CChHHHHHhhCCCCHHHHHHHHHH-HHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651 155 VVIDH--GAVPIFVKLLASPSDDVREQAVWA-LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 155 ~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~-L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
.+.+. -+|..+++.-.+.++++...|..+ +.-++...|.. .|..+..++ ...|......++..+..++
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~I-lt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLI-LTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHH-hcCcchHHHHHHHHHHHHH
Confidence 22221 245566666666667666666554 44455555542 244455555 3356666677788888888
Q ss_pred cCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651 232 RGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~ 273 (368)
..-+.... ..+..+.|.+++...+....|+..+..||..+..
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 76533322 3346788889998899999999999999988873
No 163
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.82 E-value=0.1 Score=48.83 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=126.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh-CCC----CHHHHHHHHHHHHHhhC-CC
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASP----SDDVREQAVWALGNVAG-DS 191 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~----~~~v~~~a~~~L~nla~-~~ 191 (368)
++..++.+..+..++..+..++.+++.++...+... .++ ..+..+...+ ... .....+..+|+.-.+.. .+
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 455666665555547888888888888877421111 111 2233333333 122 23444555666655543 33
Q ss_pred hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CC---C---------ChhhhhchHHHHHHhhcCCCH
Q 017651 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ---P---------PFDQVRPALPALAQLVHSNDE 258 (368)
Q Consensus 192 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~---~---------~~~~~~~~~~~L~~lL~~~d~ 258 (368)
+... ..+..|+.++ .+ +++-..++.++.-+.... .. . .......++|.|++.....+.
T Consensus 267 ~~~~------~~~~~L~~lL-~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 PLAT------ELLDKLLELL-SS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred chHH------HHHHHHHHHh-CC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 3221 1456677777 33 667778888888877662 11 0 112235677888888887777
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335 (368)
Q Consensus 259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ 335 (368)
+.+..-+.+|+++..+-+..+-.---..++|.+++-|+.+++.++..++.++..+....++....-++ .+++.|+.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 78888999999999876644322222368899999999999999999999999999887654443222 34444443
No 164
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.81 E-value=0.21 Score=44.46 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=109.7
Q ss_pred CcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Chhh
Q 017651 117 GVVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRC 194 (368)
Q Consensus 117 g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~ 194 (368)
+++..|+ ..+.+++ +.+|..|+.||+-.+--+.+... ..++.+...+..++..++..|+.++..+..- +...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455554 7778888 89999999999999985443222 2367777877777899999999999998632 1111
Q ss_pred HHHHH-------hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh-hc---CCCHHHHHH
Q 017651 195 RDLVL-------SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL-VH---SNDEEVLTD 263 (368)
Q Consensus 195 ~~~i~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l-L~---~~d~~v~~~ 263 (368)
-+... ....+..+.+.+ .+.+++++..++..++.|.-...... ...++..|+-+ ++ .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11111 123455666666 55588899999999999876653222 12333333322 22 234566666
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298 (368)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 298 (368)
....+-..+...... +..+...+++.+..+...+
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666677777666655 4555566777777776543
No 165
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.78 E-value=0.062 Score=49.30 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=103.9
Q ss_pred CCchHHHHh-cCcHHHHHHhhcCCCC--HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-C---CCHHHHHH
Q 017651 107 SPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-S---PSDDVREQ 179 (368)
Q Consensus 107 ~~~~~~~i~-~g~i~~Lv~lL~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~v~~~ 179 (368)
....+.+++ ..+...|...+.+... +.+-..|+.+++.+....|.....+.+.|.++.+++.+. . ++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 344455667 5667778888877532 688899999999999988999999999999999999887 3 56788888
Q ss_pred HHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch------hHHHHHHHHHHHhhcCCCCCChhhhhchHHH
Q 017651 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL------SMLRNATWTLSNFCRGKPQPPFDQVRPALPA 248 (368)
Q Consensus 180 a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 248 (368)
.-.+|+.||-+.. ..+.+.+.+.++.+++.+...... +........+-.|.++-|.-....+..++..
T Consensus 175 lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~ 248 (379)
T PF06025_consen 175 LPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKI 248 (379)
T ss_pred HHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8899999998875 567888889999999998433221 4455566677778887654444333333333
No 166
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.77 E-value=0.21 Score=47.67 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=89.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.+..++...+. +......|+..+.++...- +...+. .+..++.|..+.+ ..||..|+..|..+|.++++..
T Consensus 23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence 457777777774 6778889999999997653 333332 4889999999988 8999999999999999887776
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--cccchhHHHHHHHHHHH
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSN 229 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~ 229 (368)
..+ ++.|+++|.++++.-...+=++|..+...++.. .+..+...+. ...++.+++.++..|..
T Consensus 95 ~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 95 SKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred hHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 654 578999999988777777777887776555432 3455555553 24566777777776654
No 167
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.75 E-value=0.014 Score=47.94 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=89.3
Q ss_pred HHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH
Q 017651 35 EIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI 114 (368)
Q Consensus 35 ~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i 114 (368)
++=..+|-+++.+.+............... ..........+++.+.+..... ..+..|+..+..+...-++.++
T Consensus 31 ~~~~ekKw~li~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl 104 (187)
T PF06371_consen 31 NLPPEKKWQLIQQHRQKQAKHSSSSSKSKS----KASAKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFL 104 (187)
T ss_dssp TS-HHHHHHHHHHHHHH---------------------CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-
T ss_pred CCCHHHHHHHHHhHHHhccccchhhhhhhh----hhhhhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhc
Confidence 444666677776666543322200000000 0011134566778887665432 5555666555543223356788
Q ss_pred hcCcHHHHHHhhcC--------CCCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017651 115 QSGVVPRFVEFLMR--------EDYPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALG 185 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~ 185 (368)
+.|++..|+.+|.. ..+..+..+++.||..|... ......++. .+++..++..|.+++..++..++.+|+
T Consensus 105 ~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~ 183 (187)
T PF06371_consen 105 ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA 183 (187)
T ss_dssp HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999998863 12368899999999999984 444555554 689999999999999999999999999
Q ss_pred Hhh
Q 017651 186 NVA 188 (368)
Q Consensus 186 nla 188 (368)
.+|
T Consensus 184 ~lc 186 (187)
T PF06371_consen 184 ALC 186 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 168
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.72 E-value=0.13 Score=47.29 Aligned_cols=147 Identities=13% Similarity=0.169 Sum_probs=98.1
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHH-HHHhhcCChHHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA-LSYLSDGTNDKIQA 281 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~-l~~l~~~~~~~~~~ 281 (368)
++..+++.|..+.+......|+..|..+|+..+..-+...+-.+..+++.-.+.++++...|..+ +.-++.+.+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 45667778855578888999999999999986655555545555555555555556665555544 44444444433
Q ss_pred HHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 282 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.+..+..++-..+...-..++..+..++..-+...-..+-..+.|.+++...+. +..|||.|.++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 244445555446666667777788888765432111122237899999999998 99999999999998875
No 169
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.70 E-value=0.16 Score=50.57 Aligned_cols=226 Identities=15% Similarity=0.148 Sum_probs=152.9
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
..|.++..+++.. +.++....+.+..+-..++......+....+|.+..+-.+....++...++.+.-++.... . .
T Consensus 438 llp~~~~~l~de~-~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~-~ 513 (759)
T KOG0211|consen 438 LLPLLIGNLKDED-PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V-E 513 (759)
T ss_pred cChhhhhhcchhh-HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h-H
Confidence 4677777788777 8999999998877766566666666666778888888887788999999998888876532 1 1
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 277 (368)
+.....-+.+..-+ .+....++..++..+..++.... ... .....+|.++.....++...+...+.++.-++.-
T Consensus 514 ~~~~~~~~l~~~~l-~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v--- 587 (759)
T KOG0211|consen 514 FFDEKLAELLRTWL-PDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV--- 587 (759)
T ss_pred HhhHHHHHHHHhhh-hhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH---
Confidence 11111112222222 44466888899999998887654 222 2235667666666665677777777777766632
Q ss_pred HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
..+.+....+++.+..+..++.+.+|..++..+..+...-. ....+..+.|.+..+-++. +.++|-.|.-+.+-+.
T Consensus 588 ~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~---~~~~~~~v~pll~~L~~d~-~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 588 LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD---ESVRDEEVLPLLETLSSDQ-ELDVRYRAILAFGSIE 663 (759)
T ss_pred hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc---hHHHHHHHHHHHHHhccCc-ccchhHHHHHHHHHHH
Confidence 11234445678889999999999999999999998876433 2344555666666666665 7777776666555443
No 170
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.016 Score=58.49 Aligned_cols=143 Identities=24% Similarity=0.245 Sum_probs=111.2
Q ss_pred CcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 017651 117 GVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP 192 (368)
Q Consensus 117 g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~ 192 (368)
.+.|.+++..+.+ .+|++|..|.-+|+.+..-+.+... ..+|.|+..|. ++++.++..+.-++|-++..-|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3577788888543 2399999999999998875444332 35799999997 7999999999999999987666
Q ss_pred hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
..-+. .-+.|...| .+.++.+++.|..++++|...+ +..+.|.++.+..+|.+++++|..-|=..+..|+
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 53222 356677777 8889999999999999999763 4556789999999999999988877776666665
Q ss_pred cC
Q 017651 273 DG 274 (368)
Q Consensus 273 ~~ 274 (368)
..
T Consensus 1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred hc
Confidence 44
No 171
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.064 Score=52.65 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=143.6
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN 152 (368)
Q Consensus 73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 152 (368)
++.+...+..+.++.+..+-.|+..+++++.. ......+...+++..++..|++.+ +-+-..|+..+..+|.-.
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy--- 799 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVY--- 799 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhc---
Confidence 34577788888888888999999999999863 244445667889999999999988 788888999888888742
Q ss_pred hHHHhhCCChHHHHH-hhCCCC---HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651 153 TKVVIDHGAVPIFVK-LLASPS---DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (368)
Q Consensus 153 ~~~~~~~g~i~~L~~-lL~~~~---~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 228 (368)
...++|.+.. +.+..+ ++.+-....++++++....+....-.. -.+..++.-+ .+++...+..++..++
T Consensus 800 -----~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 800 -----PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLG 872 (982)
T ss_pred -----chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHH
Confidence 2357788887 443311 233334457777776432221111111 1344555555 4667778889999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHH---cCChHHHHHhc-CCCCcchH
Q 017651 229 NFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELL-GHPSPSVL 303 (368)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~L~~lL-~~~~~~v~ 303 (368)
++|+-........+..++..++.+...++ .-++..|+-.+..+..+-....-.+.. -.....+..+. .+++..++
T Consensus 873 ~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~k 952 (982)
T KOG4653|consen 873 QLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLK 952 (982)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99986533333355566666777776654 678888988888887654322222221 12333344444 33445566
Q ss_pred HHHHHHHHHh
Q 017651 304 IPALRTVGNI 313 (368)
Q Consensus 304 ~~a~~~l~nl 313 (368)
..|+.++--+
T Consensus 953 lhaql~leei 962 (982)
T KOG4653|consen 953 LHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHH
Confidence 6666555433
No 172
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.60 E-value=0.0025 Score=35.26 Aligned_cols=28 Identities=43% Similarity=0.738 Sum_probs=25.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 017651 162 VPIFVKLLASPSDDVREQAVWALGNVAG 189 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~ 189 (368)
+|.+++++.++++++|..|+++|+.|+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999975
No 173
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.0031 Score=57.51 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=90.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc----CCCc---chHHHhhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhh
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIAS----GTSE---NTKVVIDHGAVPIFVKLLA---SPSDDVREQAVWALGNVA 188 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~----~~~~---~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nla 188 (368)
.......|.+.. -..|..++|.++||+. +.+. ....+.. -.+..++..-. ..+..++..+..+|+|+.
T Consensus 435 a~~il~sl~d~~-ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 435 ANAILMSLEDKS-LNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHhhhHh-HhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 344444444444 5789999999999975 2222 1121211 11222222221 256789999999999997
Q ss_pred CCC-----hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-CCCHHH
Q 017651 189 GDS-----PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH-SNDEEV 260 (368)
Q Consensus 189 ~~~-----~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~-~~d~~v 260 (368)
.-- +.++. ...+.+..++....-...-.++.++|.+++||..+. +-........+++.|..++. +.+-+|
T Consensus 513 Qvlq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 513 QFLQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 421 11111 111223333333223346789999999999999886 23333444567888888875 457889
Q ss_pred HHHHHHHHHHhhc
Q 017651 261 LTDACWALSYLSD 273 (368)
Q Consensus 261 ~~~a~~~l~~l~~ 273 (368)
+..|+.+|..-..
T Consensus 591 Ri~AA~aL~vp~~ 603 (728)
T KOG4535|consen 591 RIRAAAALSVPGK 603 (728)
T ss_pred eehhhhhhcCCCC
Confidence 9999888876553
No 174
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.55 E-value=0.027 Score=55.58 Aligned_cols=189 Identities=21% Similarity=0.184 Sum_probs=130.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH--------H----hhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV--------V----IDHGAVPIFVKLLASPSDDVREQAVWALGN 186 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------~----~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 186 (368)
-..|+.+|+.+ ++-..++.++.-+..+++..... + .-..++|.|++.........+..-+.+|.+
T Consensus 817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 45667777653 34455666666666554332211 1 113578999998886666778888889999
Q ss_pred hhCCChhhHHHHHhc--CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC---HHHH
Q 017651 187 VAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND---EEVL 261 (368)
Q Consensus 187 la~~~~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d---~~v~ 261 (368)
+..+-|. ..+... ..+|.|++.| .-+|..++..+..++.-+....+.-.-.....++|.++.+=.++| ..|+
T Consensus 894 Vl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence 9887664 233321 2355555666 677899989999999988766555555566788898888876665 5789
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313 (368)
Q Consensus 262 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl 313 (368)
..|+.++..|+..-+-..-......++..+.+.|+++.--+|..|.++=++.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999999984333323344456889999999999888999998765543
No 175
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.53 E-value=0.15 Score=42.79 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCCcchHHHhhCCCh
Q 017651 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAV 162 (368)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i 162 (368)
..-...|+..+.-++|. ++....+++..+=-.|..+|...+ ..-+|..++.+++.+.. ++.+....+...++|
T Consensus 93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV 170 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV 170 (293)
T ss_pred cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence 33445555555555542 555666777776556677776432 26799999999999987 334555677788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-------ChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-------ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~-------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
|..++.+..++..-+..|..++..|..++....-...... .+..++..+...++..+..++..+..+|+.+.
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999887643322111111 23344444446778899999999999999763
No 176
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.51 E-value=0.18 Score=50.54 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=129.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 157 (368)
Q Consensus 78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 157 (368)
.+-..+.+.++..+.+|+..+...++... -.......|.+-.++.....+.+..+...|+.+|..|+.........+.
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 34445568899999999999999987532 1111123445555666555554488999999999999986655433333
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-C
Q 017651 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-Q 236 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~ 236 (368)
.+.+|.|+..+.+....+++.+..++-.++...+- ...++.++..+ .+.++.+...+...+....+... .
T Consensus 335 -~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 335 -KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred -HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence 36889999999988888888777777666553321 11466777777 78888888776666666555442 2
Q ss_pred -CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651 237 -PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 237 -~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~ 273 (368)
.....+..++|.++....+.+.+|+..+..+++-+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2233457889999999999999999999999987763
No 177
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.48 E-value=0.068 Score=50.91 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=82.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 017651 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (368)
Q Consensus 121 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~ 200 (368)
.++...+ ++ +..+..|+..+.......|+..+. ++..+++|..+++..||.+|+..|..+|.+.++....
T Consensus 27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--- 96 (556)
T PF05918_consen 27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--- 96 (556)
T ss_dssp HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence 3444444 34 789999999999998887776654 5678899999999999999999999999998765443
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHH
Q 017651 201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALS 269 (368)
Q Consensus 201 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~ 269 (368)
+.+.|.++| ..++..-...+-++|..|...+| .+.+..+...+. +.|+.++..++..|.
T Consensus 97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 467788888 56666656666677776665432 233444443333 456777888776664
No 178
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.45 E-value=0.1 Score=46.41 Aligned_cols=170 Identities=17% Similarity=0.081 Sum_probs=113.1
Q ss_pred CChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017651 160 GAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238 (368)
Q Consensus 160 g~i~~L~-~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 238 (368)
+.+..|+ ..+.++++.+++.++.+||-.+--+..... + .++.+...+ ..++..++..++.++..+....+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~---~--~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK---E--HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH---H--HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3444444 567788999999999999999866543322 2 467778888 55689999999999998776432221
Q ss_pred hh---------hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-cC---CCCcchHHH
Q 017651 239 FD---------QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LG---HPSPSVLIP 305 (368)
Q Consensus 239 ~~---------~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~---~~~~~v~~~ 305 (368)
+. ....++..+.+.+.+.+++++..++..++.|.-.+.-.. ...++..|+-+ .+ .++..++.-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11 124577788889999999999999999999875422111 01234444333 22 234566666
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 306 a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
-...+-..+..++.+. ..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence 6666777777776554 455567778877777665
No 179
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.43 E-value=0.006 Score=33.69 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=26.2
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 245 ALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 245 ~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
++|.+.+++++++++|+..|+++|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 180
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.39 E-value=0.47 Score=41.41 Aligned_cols=202 Identities=12% Similarity=0.096 Sum_probs=134.4
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHHhccccc-hhHHHHHHHHHH
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAK-LSMLRNATWTLS 228 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~----~~~~i~~~~~i~~l~~~l~~~~~-~~~~~~a~~~L~ 228 (368)
..+.++|.++.|+..+..-+-+-+.-++.+..|+-...-. ..+.+.. -.+.+-.++....+ +++.-.+...+.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 3455678999999999888888888899999888643322 2233332 13334444433332 444444444444
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC----hHHHHHhcCCCCcchHH
Q 017651 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLGHPSPSVLI 304 (368)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~lL~~~~~~v~~ 304 (368)
...+...-........-+.......+.+.-++..+|..++..+.......+..++..+. .+.--.++.+.+.-.+.
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 44444322222233445556666677777899999999999887665555555555433 33356677899999999
Q ss_pred HHHHHHHHhhcCCh---HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 305 PALRTVGNIVTGDD---FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 305 ~a~~~l~nl~~~~~---~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.++..+|.+..+.+ ..++++-+..-+..++.+|.++ ...++-+|-.+.--+.+
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 99999999976543 3445555557799999999999 99999999888777776
No 181
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.31 E-value=1.1 Score=45.25 Aligned_cols=238 Identities=18% Similarity=0.200 Sum_probs=143.7
Q ss_pred hcCcHHHHHHhhcCCCC----HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 017651 115 QSGVVPRFVEFLMREDY----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA----SPS----DDVREQAVW 182 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~v~~~a~~ 182 (368)
+.|++..+++++.+-.+ ...-...+.+|..++. -..+++.+++.|+++.|+..+. ++. ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 57889999998876321 2444455666666666 5889999999999999998774 333 678888887
Q ss_pred HHHHhhCCChh--hH--HHHHhcC--------ChHHHHHHhccc---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 017651 183 ALGNVAGDSPR--CR--DLVLSQG--------ALIPLLAQLNER---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP 247 (368)
Q Consensus 183 ~L~nla~~~~~--~~--~~i~~~~--------~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 247 (368)
++.-+..+... .. ....... -+..|++.+... .+..+....+..|-+|+.+.+......+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77777543211 00 0001111 266667776432 368889999999999998864333323222222
Q ss_pred HHHHhhc-----CCCHHHHHHHHHHHHHhhcC------ChHHHHHHHHcCChHHHHHhcCCC--------Cc--------
Q 017651 248 ALAQLVH-----SNDEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLGHP--------SP-------- 300 (368)
Q Consensus 248 ~L~~lL~-----~~d~~v~~~a~~~l~~l~~~------~~~~~~~~~~~~~~~~L~~lL~~~--------~~-------- 300 (368)
.+ ++=. ..+..+ .+.+++.++.+ .....+.+++.|++...+.+|... ++
T Consensus 274 ~l-~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 22 2111 111222 35555555533 134457788999999988888322 11
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.....++..|.-++.+.. .++..+..++++.+..+=+.+....+-.-|--+|-.+..
T Consensus 350 psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 123567888888888766 455567778886555544433244555555555555554
No 182
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.31 E-value=0.048 Score=43.52 Aligned_cols=147 Identities=10% Similarity=0.057 Sum_probs=88.9
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
.+++.|+.+|+.+.+..+|.+++++|+.|-.-++...+.+.... +.- .-.+.+........... ++.... +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~~-~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPMM-GISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhhc-cCCCch----H
Confidence 45788899998876699999999999999886565444222211 100 00111122222222211 121112 2
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
......++..|++.|+...-..-...++.++.++..............++|.++..+++.+...++...+-|+.|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222336788888885444444555677777777755444556677889999999998777777777777776654
No 183
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.071 Score=54.15 Aligned_cols=142 Identities=17% Similarity=0.151 Sum_probs=110.6
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 017651 161 AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236 (368)
Q Consensus 161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 236 (368)
..|.++...+. .+++++..|.-+|+.+..-+..+.+. .++.|+..+..++++-++.+++-+++.|+-..|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34666666643 57999999999999998766554332 5899999998899999999999999988876553
Q ss_pred CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651 237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
. +...-+.|...|++.++.|+..|...+++|...+ .+--.|.+..+...|.+++..++.-|=...--|+..
T Consensus 995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 2 3456678889999999999999999999998653 333358899999999999988887776555555443
No 184
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.23 E-value=0.21 Score=42.57 Aligned_cols=188 Identities=16% Similarity=0.168 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCchHH-HH-hcCcHHHHHHhhcC-------CC-CH---HHHHHHHHHHHHHhcCCCcch
Q 017651 87 DSSLQLEATTQFRKLLSIERSPPIEE-VI-QSGVVPRFVEFLMR-------ED-YP---QLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~-~i-~~g~i~~Lv~lL~~-------~~-~~---~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+++.+..|+..|.+--.. .+.... +. ..|.+..|++=+-+ +. .+ .-.-.|+..|.-+|+ .++.+
T Consensus 8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence 577888999888876432 333433 33 45767776543322 21 12 223445555666777 58999
Q ss_pred HHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017651 154 KVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~-~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 227 (368)
..++++.+.-.|..+|+. +.+.++-.++.++|.+.. ++++.-..+.+.+++|..++.+ ..+++--+..|...+
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence 999999887777777764 236788899999999985 4567788889999999999999 555666677788888
Q ss_pred HHhhcCCCC--------CChhhhhchHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChHH
Q 017651 228 SNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGTNDK 278 (368)
Q Consensus 228 ~~l~~~~~~--------~~~~~~~~~~~~L~-~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 278 (368)
..+..++.. ..+..+..++..++ .+...+++.+...+++|...|++++...
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 776655411 11222334444433 3345678999999999999999886544
No 185
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.21 Score=48.46 Aligned_cols=176 Identities=22% Similarity=0.152 Sum_probs=111.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 241 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 241 (368)
=+.+-.++.+.++-+|...+.+++---.... ..++|..|+..--.+.+.++++.|.-+|.-+|..+|
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------ 587 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------ 587 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh------
Confidence 3444556677777777776666543221111 123566666664367899999999999998887765
Q ss_pred hhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651 242 VRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 242 ~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
...|..+.+|. +-++.|+.-++.+|+-.|.+..... .+..|-.+.+++..-+|..|+-+++-|.....+.
T Consensus 588 --~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 588 --EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred --hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 35566677775 5589999999999998887644331 2445555666777889999999999885432211
Q ss_pred HHHHHHcCChHHHHHhhCCCC-CccHHHHHHHHHHHHhcCC
Q 017651 321 TQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGN 360 (368)
Q Consensus 321 ~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~ 360 (368)
...=+ .++...+.+++.+.. +.-.+-.|+.+=+-+-+|.
T Consensus 659 ~~pkv-~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGG 698 (929)
T KOG2062|consen 659 LCPKV-NGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGG 698 (929)
T ss_pred cCchH-HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCC
Confidence 11111 145566667776542 3345555665555454443
No 186
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.21 E-value=0.52 Score=47.34 Aligned_cols=211 Identities=16% Similarity=0.194 Sum_probs=124.9
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC
Q 017651 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGD 190 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~ 190 (368)
......+|+-|.++...+.-.+-...++++. .+.|++..++.++.+ ....+....+..|...+.-
T Consensus 83 geAtE~~v~~l~~~~~~~~d~e~~~~~~~v~----------~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv 152 (802)
T PF13764_consen 83 GEATEEFVESLEDDSEEEEDPEQEFKIASVL----------AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV 152 (802)
T ss_pred CccchhhHhhccCccccccCHHHHHHHHHHh----------hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh
Confidence 3455667777765332222222223333322 235889999988875 3345666666766666655
Q ss_pred ChhhHHHHHhcCChHHHHHHhc---cccc----hhHHHHHHHHHHHhhcCCCCCChh-------------hhhchHHHHH
Q 017651 191 SPRCRDLVLSQGALIPLLAQLN---ERAK----LSMLRNATWTLSNFCRGKPQPPFD-------------QVRPALPALA 250 (368)
Q Consensus 191 ~~~~~~~i~~~~~i~~l~~~l~---~~~~----~~~~~~a~~~L~~l~~~~~~~~~~-------------~~~~~~~~L~ 250 (368)
+.+|..+++.|+++.|+..+. .... ..+.+..+..+..+.......... ....-+..++
T Consensus 153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL 231 (802)
T PF13764_consen 153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL 231 (802)
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence 678999999999999998884 2222 455555555555444332111000 0123355666
Q ss_pred HhhcC----CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc--CCCCcchHHHHHHHHHHhhcCC------h
Q 017651 251 QLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLIPALRTVGNIVTGD------D 318 (368)
Q Consensus 251 ~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~------~ 318 (368)
+.+.+ .++.+....+.+|.+|+.+.++..+.+++. +...+.+= ......--...+.+++.++.+- .
T Consensus 232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~ 309 (802)
T PF13764_consen 232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGN 309 (802)
T ss_pred HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchH
Confidence 66654 368999999999999999999888877653 22222221 1111111123355666665432 3
Q ss_pred HHHHHHHHcCChHHHHHhhCC
Q 017651 319 FQTQCIITYGALPYLLGLLTH 339 (368)
Q Consensus 319 ~~~~~~~~~g~l~~l~~ll~~ 339 (368)
...+.+++.|++...++.|..
T Consensus 310 ~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 310 RLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 566778888999888777754
No 187
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.08 E-value=0.19 Score=40.90 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcC-CCcc-----hHHHhh-----CCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 017651 134 LQFEAAWALTNIASG-TSEN-----TKVVID-----HGA-VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (368)
Q Consensus 134 v~~~a~~~L~~l~~~-~~~~-----~~~~~~-----~g~-i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~ 201 (368)
+|..|+.+|..++.. .+.. ...+-+ .+. .+.+.-++.++++.+|..|+.++..|..+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566677777777664 1110 011111 123 3444457788999999999999999987654433333211
Q ss_pred C----C---------------hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC--hhhhhchHHHHHHhhcCCCHHH
Q 017651 202 G----A---------------LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--FDQVRPALPALAQLVHSNDEEV 260 (368)
Q Consensus 202 ~----~---------------i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~L~~lL~~~d~~v 260 (368)
+ . -..|+..|....+..+...++.++..|....|-.. ......++..+..++.+.|+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 1 23344555556688889999999999998875433 3444667777778888999999
Q ss_pred HHHHHHHHHHhhcC
Q 017651 261 LTDACWALSYLSDG 274 (368)
Q Consensus 261 ~~~a~~~l~~l~~~ 274 (368)
+..++.+++-+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999888754
No 188
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.05 E-value=0.81 Score=39.10 Aligned_cols=202 Identities=21% Similarity=0.171 Sum_probs=122.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
++.|+.-+....++..+...+..|..++.+...+.. -++..|..+...+.......+...+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455555455444499999999999999985412221 235566666777777777778888888876554321
Q ss_pred HhcCChHHHHHHh---------ccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHH
Q 017651 199 LSQGALIPLLAQL---------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL 268 (368)
Q Consensus 199 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l 268 (368)
+.+..++..+ ..+...+.......++..+|...|. .-..+++.+..+| +++++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444441 1122345555667899999988766 3345778888888 788899999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhCCC
Q 017651 269 SYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
..++... ..+ +. .....+.+-|+.+ .+.+....+..++.+..+.- ..........++..+-++..+.
T Consensus 147 ~~Lc~~~--vvd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAE--VVD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHh--hcc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 9999432 111 11 2244455555333 34555444444444443321 1112234446777777777766
No 189
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.01 E-value=1 Score=41.82 Aligned_cols=236 Identities=13% Similarity=0.080 Sum_probs=136.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc--hHHHHhcCcHHHHHHhhcCCC----CH--HHHHHHHHHHHHHhc
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED----YP--QLQFEAAWALTNIAS 147 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~--~~~~i~~g~i~~Lv~lL~~~~----~~--~v~~~a~~~L~~l~~ 147 (368)
...+..+.+..+.+.++.|+....+++...+-.. .+.+.+.-+.+.+=++|.+.+ .| -.+..++.+|+-.|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 4456677777888899999999999987652222 234677777888888887632 23 345556677777777
Q ss_pred CCCcch--HHHhhCCChHHHHHhhCC-C------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017651 148 GTSENT--KVVIDHGAVPIFVKLLAS-P------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS 218 (368)
Q Consensus 148 ~~~~~~--~~~~~~g~i~~L~~lL~~-~------~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~ 218 (368)
. ++.. ..++ +.||.|..++.. . +-.+.+.+-.+|..+++..+ -...++..|+++.+.+....++-.-
T Consensus 93 ~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~ 168 (698)
T KOG2611|consen 93 V-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSH 168 (698)
T ss_pred C-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCch
Confidence 4 4332 3344 479999999974 1 23478889999999998854 4567888899999997763222111
Q ss_pred HHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH-H-HHHHHHcC----ChHH
Q 017651 219 MLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND-K-IQAVIEAG----VCPR 290 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~-~-~~~~~~~~----~~~~ 290 (368)
-..-++..+.-+.... -.........++..+..-+...+.......|..|..+...... . ........ ...-
T Consensus 169 d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G 248 (698)
T KOG2611|consen 169 DMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG 248 (698)
T ss_pred hHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence 1111222222111111 1111111222344444444556677788888888855433221 0 01111011 1222
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHhhc
Q 017651 291 LVELLGHP-SPSVLIPALRTVGNIVT 315 (368)
Q Consensus 291 L~~lL~~~-~~~v~~~a~~~l~nl~~ 315 (368)
+..+|.+. .+.-|.+|+....|+.+
T Consensus 249 ~~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 249 VVAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHHhcccCchhcChHHHHHHHHHH
Confidence 34455332 45567788888887764
No 190
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.97 E-value=0.06 Score=45.85 Aligned_cols=142 Identities=11% Similarity=0.143 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCCcchHHHhhCCChHHH
Q 017651 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIF 165 (368)
Q Consensus 91 ~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L 165 (368)
...|+..+.-+++. ++....++++.+.-.|..+|+..+ ...+|..++.+++.+.. ++.+....+.+.+++|..
T Consensus 67 VcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 67 VCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 33455555555552 667778999998888888887643 15688999999999987 445667788889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhhHH------HHHh-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 166 VKLLASPSDDVREQAVWALGNVAGDSPRCRD------LVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 166 ~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~------~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
++.++.++.--+..|..++..|..++....- .+.. ..++..++..+...+++.+.+++..|...|+.++
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999998888888999999988766432211 1111 1145555665667789999999999999999874
No 191
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.93 E-value=0.069 Score=36.07 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG 328 (368)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g 328 (368)
...++|++++++..+. -...+.+.++++.++++. .++...+|-.|.++++-++.. .+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4679999999998644 446666779999999998 467789999999999999874 44556555544
No 192
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.93 E-value=0.2 Score=47.36 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHhhcCC-CC-C-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651 217 LSMLRNATWTLSNFCRGK-PQ-P-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293 (368)
Q Consensus 217 ~~~~~~a~~~L~~l~~~~-~~-~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 293 (368)
+.+-..++..+..+.... +. + ....+.+++..++..+.+.|..|+..++.+|+-+.+.-.+ ++..+-.|++..|..
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~ 139 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSE 139 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHH
Confidence 333344444444444433 22 2 2556688888999999999999999999999999876433 345555688888888
Q ss_pred hcCCCCcchHHHHHHHHHHhhc--CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651 294 LLGHPSPSVLIPALRTVGNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 294 lL~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
-+-+..+.+|..|+.+|+.+-. +++++. ....|..+++++.+.+||+.|..-|
T Consensus 140 R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 140 RLFDREKAVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHhcchHHHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 8888889999999999998853 333322 2446677777765888988875544
No 193
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.90 E-value=0.32 Score=40.93 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHH-HHHHhhcC-----CCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHH
Q 017651 219 MLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-----NDEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRL 291 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~-~L~~lL~~-----~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L 291 (368)
-..+++..+..++.+ |.....+..--+| .+..+|.. +.+..+..+++.|+.|...+ .+.+..+...++++..
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345666666666666 4444444444444 46666643 34778999999999999654 5667788899999999
Q ss_pred HHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH--------cCChHH-HHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 292 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT--------YGALPY-LLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~--------~g~l~~-l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
++.+..++...+..|..+++.|...+. ...++-. .-++.. +.++.+.+ ++.+-|.+..+..+++..
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999886443 2221111 022333 33444455 888888888888888763
No 194
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.90 E-value=0.41 Score=44.64 Aligned_cols=234 Identities=15% Similarity=0.099 Sum_probs=137.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
-+..|+..+.|.|+..|......++++... -......+...+...|.+++..+.......+.+.+++.+..|..---.
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 377888899999999998888888888664 344555666667788888888665567788899999999886432111
Q ss_pred HHhhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 155 VVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
.-...-....|+-|.+.+. .....+-..++..+...+|..-.. .+..+++.- ...+..=....+.-+..+...
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence 1111112233344444433 233456666666666666554222 233333333 233444444555666666655
Q ss_pred CCCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCC-----CCcchHH
Q 017651 234 KPQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-----PSPSVLI 304 (368)
Q Consensus 234 ~~~~~~~-~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~ 304 (368)
-+...+. ....++..+...+.+.+..|...|+....| +..-.++.. .+++.+...|.. =+..++.
T Consensus 286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4333332 225566777888889999998888765432 222223322 256777766632 1578999
Q ss_pred HHHHHHHHhhcCChHHHH
Q 017651 305 PALRTVGNIVTGDDFQTQ 322 (368)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~ 322 (368)
.|..++.-+..-++...+
T Consensus 360 ~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhCHHHHH
Confidence 999999998887765444
No 195
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.89 E-value=0.022 Score=45.30 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=99.2
Q ss_pred ChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017651 203 ALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 281 (368)
Q Consensus 203 ~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 281 (368)
.++.++..|.. ...++++..+.-++..+-.. ........+-+.+..++...+.+-...++.++..+-...++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 35556666644 56778888888888887411 111111223344555555555567778888888888888877766
Q ss_pred HH-HcCChHHHHHhcC--CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCcc-HHHHHHHHHHH
Q 017651 282 VI-EAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS-IKKEACWTISN 355 (368)
Q Consensus 282 ~~-~~~~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~-v~~~a~~~l~n 355 (368)
++ ..|+.+.++.... ..+..++..++.+|..=|. .. .+...+...++++|-.+++.+.++. +|..|+-+|.-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 65 5588999999987 6778888888888876654 33 3444555588999999997653555 88888877754
No 196
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.85 E-value=0.07 Score=42.45 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=94.7
Q ss_pred ChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017651 161 AVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238 (368)
Q Consensus 161 ~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 238 (368)
.++.++..|. ...++++.++.-++..+- +..++...+ .+..++..+....+.+-...++.++..+....|...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 3555555554 356788999999998884 334444433 344444443344455566778888888887654433
Q ss_pred hhh--hhchHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-CCCcc-hHHHHHHHHHH
Q 017651 239 FDQ--VRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPS-VLIPALRTVGN 312 (368)
Q Consensus 239 ~~~--~~~~~~~L~~lL~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~-v~~~a~~~l~n 312 (368)
... ..++++.+..+.. ..+..+...++.+|..=|.. ... ...+...+++.|-..++ ++++. ++..|+-+|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 332 2788999999998 77889999999998776654 333 44455567888888885 44455 78888776653
No 197
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.84 E-value=0.036 Score=37.43 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQG 202 (368)
Q Consensus 135 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~ 202 (368)
...|+|+++++++ ++.....+.+.++++.++++..+ +...+|-.|.++|+-++... +..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 4679999999998 46666666678999999998874 67899999999999998765 4455555544
No 198
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.84 E-value=0.8 Score=45.43 Aligned_cols=196 Identities=17% Similarity=0.119 Sum_probs=112.1
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPR 193 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~ 193 (368)
.+..+.+++.... --..+|++.|..+......-... .+..+..++.+ .++.++..|+-+++.+......
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3556677777644 22344556666655532222222 34555666654 4577888899999888642111
Q ss_pred h---------HHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CH
Q 017651 194 C---------RDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DE 258 (368)
Q Consensus 194 ~---------~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~---d~ 258 (368)
. .........++.+...+. ...+..-...++.+|.|+-.. ..++.+..++... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 1 111222336777777775 234567778889999998753 5788888888766 68
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 336 (368)
Q Consensus 259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~l 336 (368)
.++..|++++..++...++.+ .+.+.+++.+ .++++|..|+.+|-.. ++.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 899999999999987766553 4556666633 3577888887665542 2211 125556667
Q ss_pred hCCCCCccHHHH
Q 017651 337 LTHSHKKSIKKE 348 (368)
Q Consensus 337 l~~~~~~~v~~~ 348 (368)
+..+.+..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 766534444443
No 199
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.12 Score=48.53 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=73.1
Q ss_pred chHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHH
Q 017651 244 PALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQT 321 (368)
Q Consensus 244 ~~~~~L~~l-L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~ 321 (368)
+++..++.. .++.+.+|+..|.-+|+.+|..+.+. +...+++| .+.++.+|.....+||-.|++...+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~---------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL---------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcch---------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 455555555 45667889999999999888765443 55667776 56678899999999998888776443
Q ss_pred HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 322 ~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
. +..|-.++.+. ..-||..||-+++-|.-
T Consensus 622 a-------~diL~~L~~D~-~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 A-------TDILEALMYDT-NDFVRQSAMIAVGMILM 650 (926)
T ss_pred H-------HHHHHHHhhCc-HHHHHHHHHHHHHHHHh
Confidence 2 66677777777 78899999999888775
No 200
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.64 E-value=0.24 Score=49.69 Aligned_cols=188 Identities=14% Similarity=0.075 Sum_probs=129.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 241 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 241 (368)
.+.+..-+.+++..-+..|+..+..+..... ........|.+-.++.....+.+..+...++.+|..++..-.......
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 3455555666777788888888888776543 111111223455566666577788999999999999998765554555
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HH
Q 017651 242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQ 320 (368)
Q Consensus 242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~ 320 (368)
..+.+|.+++-+...-..++..+..++-.++....- ....+.+...+++.++.++..+...+.......+ ..
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 577888999888877777777666666555532111 1246778888999999999998888888776554 11
Q ss_pred HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 321 ~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
...-.-.+.++.++....+. +.+||+.|..+++-+..
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 11112236788888888888 89999999998887765
No 201
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.64 E-value=0.35 Score=45.73 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=52.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~ 193 (368)
.|.|-..|++.- ..+..++++++..++..+ ....+++ ..+..|-.+|.++....+-.|+++|..|+...|.
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 344445555554 689999999999988754 2222332 3577888899999999999999999999987764
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.57 E-value=0.86 Score=42.54 Aligned_cols=258 Identities=12% Similarity=0.121 Sum_probs=145.5
Q ss_pred HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-
Q 017651 93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS- 171 (368)
Q Consensus 93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~- 171 (368)
.+...|..++......+....++..++..|+.++.++| +.-|.....+|.++-......+..+.. .+...|.+++..
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence 34445555554322222344667778999999999999 999999999999988766666665554 456677777764
Q ss_pred CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHH
Q 017651 172 PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALA 250 (368)
Q Consensus 172 ~~~~v~~~a~~~L~nla~~~~-~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~ 250 (368)
....-...++..++.+..+-. ..++.-... ....++.+.....-.........++..++..+|.. ...++..|+
T Consensus 187 ~~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~ll 261 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLL 261 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHH
Confidence 344556678888888876421 222211110 22334444433333444566777777777654321 112333333
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHc--
Q 017651 251 QLVHSNDEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY-- 327 (368)
Q Consensus 251 ~lL~~~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-- 327 (368)
..=-..++.=..-.+.-+..+...- +.....+ ..-++..+...+++++..|.+.|+..+.| +.... ++..
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~ 334 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNS 334 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhCh
Confidence 3322334433344444555555432 2322222 22457777788889988888888876543 21222 3322
Q ss_pred -CChHHHHHhhCCC----CCccHHHHHHHHHHHHhcCCHHHh
Q 017651 328 -GALPYLLGLLTHS----HKKSIKKEACWTISNITAGNRDQI 364 (368)
Q Consensus 328 -g~l~~l~~ll~~~----~~~~v~~~a~~~l~nl~~~~~~~i 364 (368)
.++|.+...|... =+..++..|.-++.-+...+++-.
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 3567777665431 156899999999998888776643
No 203
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=0.068 Score=51.43 Aligned_cols=128 Identities=18% Similarity=0.153 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651 219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 298 (368)
+.+.++..+..|-+.+ .....+.+++..+++...++|..|+..+|..|..+.....+. +.-+-.++...+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhcc
Confidence 3344444444443332 233466788888888889999999999999999998743322 3333346677788888888
Q ss_pred CcchHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 299 SPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 299 ~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
.|.+|..|+.+|+.+=..+ ++.. .+...+..+++++.+++||+.|...|++
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDEEC------PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 9999999999999986322 2221 3566778888877689999988655543
No 204
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.47 E-value=1.4 Score=38.29 Aligned_cols=218 Identities=15% Similarity=0.155 Sum_probs=123.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 017651 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVL 199 (368)
Q Consensus 122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~ 199 (368)
|=..|.+++ +.+|..|+.+|+.+...-+... ....-+..|+.++.+ .+......++.++..|............
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV 79 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH
Confidence 445677877 8999999999999877544221 222234555554433 3444555557777766633221111111
Q ss_pred hcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChH
Q 017651 200 SQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 200 ~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~ 277 (368)
..+..+.+... +......+..+...+..+...........-..++..+++.+..+ ||+-...+...+..+...-+-
T Consensus 80 --~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 80 --KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred --HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 12333333221 12244566677777777776532111222245677777777654 898888888888777644321
Q ss_pred HHHHHHHcCChHHHHHhcC--------C-C-Cc--chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccH
Q 017651 278 KIQAVIEAGVCPRLVELLG--------H-P-SP--SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 345 (368)
Q Consensus 278 ~~~~~~~~~~~~~L~~lL~--------~-~-~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v 345 (368)
....+.+...+. . + ++ -.+..--..|.+..+.++... .-.+|.|++=|.++ .+.+
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~ 224 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV 224 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence 122222333321 1 1 22 234444455555555555332 25688999999998 8999
Q ss_pred HHHHHHHHHHHhc
Q 017651 346 KKEACWTISNITA 358 (368)
Q Consensus 346 ~~~a~~~l~nl~~ 358 (368)
|..+..+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 205
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.35 E-value=0.6 Score=45.22 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=132.4
Q ss_pred hhcCCCHHHHHHHHHHHHH--hhcCCCCCchHHHHhcCcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651 82 GVWSDDSSLQLEATTQFRK--LLSIERSPPIEEVIQSGVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 82 ~l~~~~~~~~~~a~~~l~~--l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
.+...+++.-..|...++. ++-++ .-+-+.+-|...+...+. +++.++..|.-+|..+-.-+.+...
T Consensus 861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-- 932 (1128)
T COG5098 861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-- 932 (1128)
T ss_pred hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 3344445555555555542 22222 122234456666666551 3389999999999987653333222
Q ss_pred hhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651 157 IDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 157 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
.-+|.|+..+. +++|.++..|+-.||.++.--....+. .-..|.+.| .+.+..+++.+..++.+|.-..
T Consensus 933 ---ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag- 1002 (1128)
T COG5098 933 ---EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG- 1002 (1128)
T ss_pred ---HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc-
Confidence 35799999887 799999999999999886422112121 345677777 7889999999999999988653
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC---cchHHHHHHHHHH
Q 017651 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVLIPALRTVGN 312 (368)
Q Consensus 236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~~a~~~l~n 312 (368)
...+.|-++.+..+|.++|.++..-|-..+..++..+.... .|++..+ ..|+++. ..-....++.+..
T Consensus 1003 ---q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~y-----n~fidif-s~ls~~ae~g~e~fk~II~FLt~ 1073 (1128)
T COG5098 1003 ---QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMY-----NGFIDIF-STLSSDAENGQEPFKLIIGFLTD 1073 (1128)
T ss_pred ---ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchh-----hhhHHHH-HHcCchhhcCCCcHHHHHHHHHH
Confidence 23446888999999999998888877777777776543332 2444333 3333221 1224455666666
Q ss_pred hhcCCh
Q 017651 313 IVTGDD 318 (368)
Q Consensus 313 l~~~~~ 318 (368)
+.....
T Consensus 1074 fI~ker 1079 (1128)
T COG5098 1074 FISKER 1079 (1128)
T ss_pred HHHHHH
Confidence 665443
No 206
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.33 E-value=0.25 Score=42.31 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh
Q 017651 90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169 (368)
Q Consensus 90 ~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL 169 (368)
....|+..|.-++--. ++....+-....+..|+.+|.....+.++..++.+|..+.-+++.+...+-+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 4455667777776553 555556668889999999996655589999999999999988999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHhhC
Q 017651 170 ASP--SDDVREQAVWALGNVAG 189 (368)
Q Consensus 170 ~~~--~~~v~~~a~~~L~nla~ 189 (368)
++. +.+++-.++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 874 46777777766655543
No 207
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=1 Score=44.16 Aligned_cols=69 Identities=28% Similarity=0.360 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~ 193 (368)
.+.+=.++++.. ..+..+|+.++.++...++.... .++..|--++.++...+|-.|.++|..+|...|.
T Consensus 247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 444555666666 78999999999998875443222 2778888888999999999999999999876553
No 208
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.24 E-value=0.07 Score=51.34 Aligned_cols=183 Identities=14% Similarity=0.170 Sum_probs=127.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+|.+++++.+.|..+|..-+..+-++. ..-...+++..++|.+..-+.+.+ +.+|..++.++..++.--.+
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~--- 402 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSK--- 402 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhch---
Confidence 4788888888888888888777777775 233456677888899988888888 89999999988888873221
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
..+....+..|..+-.+++..++....-||+.|+.+. +..|..+ .+.++.+-+ .++-...+....+++...+..
T Consensus 403 ~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftral-kdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 403 RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRAL-KDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred hhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhh-cCCCCCchhhhhHHHhhcccc
Confidence 1344445666666666677888888888888888663 3333222 344555655 566666677888888776665
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
.+. ......++|.+..+.-+++..++..+..++....
T Consensus 478 ~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 478 FDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cch--hhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 332 2333467888888887788888877777665444
No 209
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.20 E-value=0.11 Score=42.61 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhhHHHHH---------------hcCChHHHHHHhcc-----ccchhHHHHHHHHHHH
Q 017651 170 ASPSDDVREQAVWALGNVAGDSPRCRDLVL---------------SQGALIPLLAQLNE-----RAKLSMLRNATWTLSN 229 (368)
Q Consensus 170 ~~~~~~v~~~a~~~L~nla~~~~~~~~~i~---------------~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~ 229 (368)
.++.......++.+|+|++.....++..+- +...+..|+..+.. .....-...++.+|.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 345566778899999999887654432221 12246777777755 1234556789999999
Q ss_pred hhcCCCCCChhhh--hch--HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651 230 FCRGKPQPPFDQV--RPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 230 l~~~~~~~~~~~~--~~~--~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
+++.+....+... ... +..|+.++.+.+..-+.-++.+|.|+|...+.+ ..++.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~ 142 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLS 142 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcC
Confidence 9988644333322 223 677888888887777888999999999875555 44444
No 210
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.20 E-value=0.3 Score=44.72 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhH---------HHH
Q 017651 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCR---------DLV 198 (368)
Q Consensus 133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~~~~~~---------~~i 198 (368)
.++..++.++...+....+....++. ..+.....+|.+ ..+.+...|+..|+.++... ..+ +.+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~-~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP-HHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH-HHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch-hHHHHhCCHHHHHHH
Confidence 45666666666665544443333332 344555555543 23567778888888776542 222 122
Q ss_pred HhcCChHHHH-------HHh------------ccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----
Q 017651 199 LSQGALIPLL-------AQL------------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----- 254 (368)
Q Consensus 199 ~~~~~i~~l~-------~~l------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~----- 254 (368)
++. ++-|.+ ++. ..++...-++.|+..+..|+...+...... +...+..+|.
T Consensus 189 ie~-VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i---~~~~i~~~l~~y~~~ 264 (370)
T PF08506_consen 189 IEK-VIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI---LMQYIQQLLQQYASN 264 (370)
T ss_dssp HHH-THHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-
T ss_pred HHH-hccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhC
Confidence 221 222221 111 111223456678888889986532211111 2223334443
Q ss_pred -CCCHHHHHHHHHHHHHhhcCChH------------HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH
Q 017651 255 -SNDEEVLTDACWALSYLSDGTND------------KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 321 (368)
Q Consensus 255 -~~d~~v~~~a~~~l~~l~~~~~~------------~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 321 (368)
+.++.-...|+..++.++..... ....+....++|.|. -=.+..|-++..|++.+..+...-+.
T Consensus 265 ~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~-- 341 (370)
T PF08506_consen 265 PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK-- 341 (370)
T ss_dssp TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--
T ss_pred CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--
Confidence 34677778888888888854321 234455555666665 11234577899999999998765432
Q ss_pred HHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651 322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 322 ~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
+.+. ++++.++..|.++ +..|+-.|+.++
T Consensus 342 ~~l~--~~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 EQLL--QIFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp HHHH--HHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhCCC-CcchhhhhhhhC
Confidence 1122 5799999999999 899999999875
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.24 Score=46.65 Aligned_cols=149 Identities=22% Similarity=0.325 Sum_probs=102.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG 202 (368)
Q Consensus 124 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~ 202 (368)
+++.+.+ +-+|...+..++.--.++. ..|++..|+.. .++.++++++.|.-+||-+|.+++.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 4444555 6777777776665444432 23678888887 7788999999999999999988754
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 282 (368)
.++..+++|..+-+.-++.-.+.+|.-.|.+... ...+..|-.+..+.+.-|+..|+-+++.+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4667788886777888888899999988877522 1245556666677778899999999998875433221111
Q ss_pred HHcCChHHHHHhcC
Q 017651 283 IEAGVCPRLVELLG 296 (368)
Q Consensus 283 ~~~~~~~~L~~lL~ 296 (368)
+ .++.+.+.+++.
T Consensus 660 v-~~I~k~f~~vI~ 672 (926)
T COG5116 660 V-KRIIKKFNRVIV 672 (926)
T ss_pred H-HHHHHHHHHHHh
Confidence 1 245556666653
No 212
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.16 E-value=3.1 Score=39.66 Aligned_cols=249 Identities=15% Similarity=0.124 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCH---HHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651 87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP---QLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (368)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (368)
..+.|..+...+..++........ .. =..+...+..+..+ ..+.+|+.+|+ .+..+. ...+.++.+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT---~~Grdi--~~~~~~i~~ 110 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALT---DNGRDI--DFFEYEIGP 110 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHH---cCCcCc--hhcccchHH
Confidence 356777777777777665421011 00 12233444433223 45555555555 422222 235567777
Q ss_pred HHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccc
Q 017651 164 IFVKLLASP---------------------------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK 216 (368)
Q Consensus 164 ~L~~lL~~~---------------------------~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~ 216 (368)
.|...|..- +.......+..+.|+...+...-+.-.-.+.+..++.+.....+
T Consensus 111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence 777766421 22233445555555554443221211122245555555444445
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC
Q 017651 217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (368)
Q Consensus 217 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 296 (368)
......++..+-.+......+ ......++..|...... .++...+-.++.||+...... ..+..|..+|.
T Consensus 191 ~~di~~~L~vldaii~y~~iP-~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~ 260 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGDIP-SESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHHHHHHcCcCC-hHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHc
Confidence 555566666666665543111 22223344444444222 255666667888888654333 23566777773
Q ss_pred CC------CcchHHHHHHHHHHhhcCChHHHHHHHHc-C--ChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 297 HP------SPSVLIPALRTVGNIVTGDDFQTQCIITY-G--ALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 297 ~~------~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-g--~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
++ +..+..-|+.+++.+..+..+....-+.. - +++.+...++.+ ++.+--+....+.++.
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 22 34556688888988877663222222222 2 678888888877 7777778777777777
No 213
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.99 E-value=1 Score=41.45 Aligned_cols=135 Identities=14% Similarity=0.192 Sum_probs=92.2
Q ss_pred CcchHHHhh-CCChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-c--ccchhHHHH
Q 017651 150 SENTKVVID-HGAVPIFVKLLASP---SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-E--RAKLSMLRN 222 (368)
Q Consensus 150 ~~~~~~~~~-~g~i~~L~~lL~~~---~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-~--~~~~~~~~~ 222 (368)
......+++ ......|..++.+. .+.+...|+.++..+..+.|..-..+.+.|.++.+++.+. . .++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 333444555 44456666677653 3788899999999999999999999999999999999996 2 247888999
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH-------HHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651 223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE-------EVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 223 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~-------~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
.-.+|..||-+..........+.++.+++++.+.+- +.....-..+-.|..+.+.....+++
T Consensus 175 lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 175 LPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999886443333335778888887765431 22233333444555665555444443
No 214
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.92 E-value=2.3 Score=39.24 Aligned_cols=264 Identities=17% Similarity=0.146 Sum_probs=138.3
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
.+.+.+.+..|...|.+.+....+.+-...+.. -++.|++++.. +.+..+..+|+.+|+.+... ++..
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~-k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD-KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence 345556666776666666655433222222211 14445544431 11367889999999998873 4444
Q ss_pred HHHhhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---c-ccchhHHHHHH
Q 017651 154 KVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---E-RAKLSMLRNAT 224 (368)
Q Consensus 154 ~~~~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~---~-~~~~~~~~~a~ 224 (368)
..+-+.- .+...+..+.+ .+..+....+|+|..=--. ..++....+..++..+. . -+...+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 3333321 34555666644 3457777788877653222 22334444555555442 2 34667888888
Q ss_pred HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh--cCCh-HHHH---HHHHc----C-----ChH
Q 017651 225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS--DGTN-DKIQ---AVIEA----G-----VCP 289 (368)
Q Consensus 225 ~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~--~~~~-~~~~---~~~~~----~-----~~~ 289 (368)
.++.+|....|..-......-+|.++..+-+....++..|..++..+. .++. .... ...+. + +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 999998877554433334456777777776777777766555544443 2221 1111 11111 2 233
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
.+..++.+.+.....+-+|..--+.-++......-.-...+...-..+.++ ++.+|.+|..+=..
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~ 300 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRR 300 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 355555553444444444444433333331111011113455555667777 88888887554333
No 215
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.88 E-value=1.7 Score=42.28 Aligned_cols=254 Identities=14% Similarity=0.131 Sum_probs=149.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 157 (368)
Q Consensus 78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 157 (368)
.+++.+.-.+.+.+..-...|.+.+. ..-+.++..-++|.|+..+.-.+...-....+..++..... .+ .
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l~----~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----y 327 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRLD----NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----Y 327 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----c
Confidence 34444455555555555555554332 12234556666777777666554212222223333333332 22 4
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 237 (368)
..+++|.|++++...+..+|-.-+.=+-+.... ....+++.-+++.+..-+ .+.+..++...+.++..|+..-...
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh
Confidence 557899999999999988887666555554433 334566666788888888 8889999999999988887543211
Q ss_pred ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC-hHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
..-...+..+..+-.+++..+++...-|++.++....... ..++ ...+.+-+.++-...|..+++.+......
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 1112355555555455568899999989988886632221 2232 33444556666666777777776665544
Q ss_pred ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 317 ~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
.+.. =+...++|.+..+.-++ +..+|..|--++.-
T Consensus 478 ~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 478 FDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQ 512 (690)
T ss_pred cchh---hhhhhccccccccccCc-ccchhhHHHHHHHH
Confidence 3311 12235677777766666 66666655555443
No 216
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.72 E-value=0.18 Score=48.64 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=82.0
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 017651 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~ 194 (368)
-.|++..+++...+++ ..||..++.+|..+... .......+-.+....+..-+.+..+.|+.+|+.+|+.+=++...-
T Consensus 83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 3556777777777777 79999999999999884 344455555577778888888888999999999999997543211
Q ss_pred HHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (368)
Q Consensus 195 ~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 228 (368)
+..+...+..+++.++++++++.++..+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23367788899988999999999877655
No 217
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.67 E-value=1.5 Score=40.19 Aligned_cols=242 Identities=17% Similarity=0.182 Sum_probs=129.0
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCCc
Q 017651 74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
+.+..++..+.++ ....+..++..|..-+. .......+...|.+..+++.+.. ++++..-..++.++.-++.+ ..
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~--~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~ 97 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA--DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GL 97 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC--CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Cc
Confidence 4577888888843 35677777766665543 25667788899999999999954 44233444444444445543 33
Q ss_pred chHHHhhCCChHHHHHhhC--C-------C-----------------------------------CHHHHHHHHHHHHHh
Q 017651 152 NTKVVIDHGAVPIFVKLLA--S-------P-----------------------------------SDDVREQAVWALGNV 187 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~--~-------~-----------------------------------~~~v~~~a~~~L~nl 187 (368)
....+.+.+....++.++. . . ...-+..|+.++-.+
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l 177 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL 177 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence 3333334455555566555 0 0 001112233333333
Q ss_pred h--------------CCChhhHHHHHhcCChHHHHHHhcc----c--------c---chhHHHHHHHHHHHhhcCCCCCC
Q 017651 188 A--------------GDSPRCRDLVLSQGALIPLLAQLNE----R--------A---KLSMLRNATWTLSNFCRGKPQPP 238 (368)
Q Consensus 188 a--------------~~~~~~~~~i~~~~~i~~l~~~l~~----~--------~---~~~~~~~a~~~L~~l~~~~~~~~ 238 (368)
+ .....+++.+.+.|++..++..+.. . . +......++++|-+.+...+...
T Consensus 178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq 257 (361)
T PF07814_consen 178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ 257 (361)
T ss_pred HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence 1 1112345566677788888888741 1 0 11234456677777665543222
Q ss_pred hhhh---hchHHH-HHHhh---cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-------C-------C
Q 017651 239 FDQV---RPALPA-LAQLV---HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-------G-------H 297 (368)
Q Consensus 239 ~~~~---~~~~~~-L~~lL---~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-------~-------~ 297 (368)
.... .+.++. +..++ ......+...++..+.|++.+++...+.+...++...+..+. . .
T Consensus 258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~ 337 (361)
T PF07814_consen 258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEE 337 (361)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccccc
Confidence 2111 222322 22222 222355678899999999988866666655553333222111 1 0
Q ss_pred CCcchHHHHHHHHHHhhcCCh
Q 017651 298 PSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 298 ~~~~v~~~a~~~l~nl~~~~~ 318 (368)
..-+...-+++++-|++..++
T Consensus 338 ~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 338 SSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccchHHHHHHHhHHHheeeCc
Confidence 123455667777777776554
No 218
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.59 E-value=0.36 Score=39.66 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHH----------------cCChHHHHHhcCC------CCcchHHHHHHHHHH
Q 017651 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLGH------PSPSVLIPALRTVGN 312 (368)
Q Consensus 255 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~L~~lL~~------~~~~v~~~a~~~l~n 312 (368)
.++......+|..|+|++...... ..+++ ...+..|+..+.. ....-......++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344556677888888888764433 22222 1246666766633 234556788899999
Q ss_pred hhcCChHHHHHHHHc--CC--hHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651 313 IVTGDDFQTQCIITY--GA--LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 313 l~~~~~~~~~~~~~~--g~--l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
++... +.++.+++. +. +..|+..+++. +..-|+.++.+|-|+|.....|
T Consensus 85 lS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 85 LSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred hcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH
Confidence 99754 477777765 34 78888888888 8888899999999999876655
No 219
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.49 Score=45.79 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=99.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCCcc----hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 017651 120 PRFVEFLMREDYPQLQFEAAWALTNIAS-GTSEN----TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (368)
Q Consensus 120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~----~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~ 194 (368)
|.|.+-|+.++ ..+|..|+..+.+..- ..++. .+.+++ .-...+..+|.++.+.++..|..-++.+...--+.
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33445555667 7999999999999765 22333 233443 23677888999999999999988888776432111
Q ss_pred H--HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 195 R--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 195 ~--~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
- ..+.+ .+..++.-+..+...+++......|..+..++ ......+.++|.+-..|+++.+.|+..+...|..+-
T Consensus 255 iP~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 0 11111 34445555555667788888888888888763 233344567888888888888999998888887764
Q ss_pred c
Q 017651 273 D 273 (368)
Q Consensus 273 ~ 273 (368)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 3
No 220
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.34 E-value=0.38 Score=34.31 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=57.9
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 277 (368)
+...+..+ .++.+.++..++..|..|...+. ........++..+...|.++|+.|--.|+.+++.|+...++
T Consensus 5 ~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34455566 67788899999999999998865 23334467888888999999999999999999999977655
No 221
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.32 E-value=3.5 Score=43.77 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=94.4
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
+++..++..|..+. +.+|..|++||.++...++... .....-..+..-+.+.+..|++.|+..+|...-..++.
T Consensus 816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~-- 889 (1692)
T KOG1020|consen 816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL-- 889 (1692)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH--
Confidence 45777888888777 8999999999999998554321 11122234445666778899999999999876555443
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHhh
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLS 272 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~~l~ 272 (368)
+.+ ....+..-+ .++...|+..+...+..+|...|.-. .....+.++|. ++...|+.-++.++..+=
T Consensus 890 -~~q--yY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 890 -IFQ--YYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred -HHH--HHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 222 345566666 67788999999999999998754322 23334445543 222337777777776663
No 222
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.23 E-value=1.5 Score=41.33 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=111.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCC---HHHHHHHHHHHHHHhcCCCc
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~---~~v~~~a~~~L~~l~~~~~~ 151 (368)
....+.+.+.+++...+..|+..+..+ |.+ .....+++...++..|.+++.+++. .++...++.++..+-.+..-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 356788889999999999999988877 332 5667889999999999999988752 34555555666555443221
Q ss_pred chHHHhhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651 152 NTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
..+ .+....|.....+.+ -.+..+-..|+..|-++...++..+..+.+.--+..++..+ +..+..++..+...+..
T Consensus 162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 111 111222333333332 24566778899999999888877788888888899999999 77788888888888888
Q ss_pred hhcCCCCC
Q 017651 230 FCRGKPQP 237 (368)
Q Consensus 230 l~~~~~~~ 237 (368)
+....|..
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 88765443
No 223
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.41 Score=44.36 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-hhchHH
Q 017651 170 ASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ-VRPALP 247 (368)
Q Consensus 170 ~~~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~ 247 (368)
.+++..++..|+..|+|.+...|. ++...- -.+..++.-|.++.+.+|+-.+..+|..+........... .-++.-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~--~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKT--TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 357889999999999999988543 322221 1466677767566688999999999988876543322221 123344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHH--cCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651 248 ALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIE--AGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~--~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.+..++.+.+++++..+...++.|+.... .....+.+ .+-...++-.+.++++.+ ..||+.....+.
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 56677788899999999998888874321 11122222 122333444455666643 456666666554
No 224
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=3.5 Score=40.59 Aligned_cols=234 Identities=14% Similarity=0.124 Sum_probs=134.2
Q ss_pred cCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017651 116 SGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 186 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 186 (368)
.|+++.++..|... +++.-.+-|++.++++.+ .-..-...+.+.-+++.++..++++.--++..+|..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 57889999999421 234556677788888776 334444556666677888888899888999999999999
Q ss_pred hhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh----hchHHHHHHhhcCCCHHHHH
Q 017651 187 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV----RPALPALAQLVHSNDEEVLT 262 (368)
Q Consensus 187 la~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~L~~lL~~~d~~v~~ 262 (368)
+..+- .+..+-..+.+.....+ ++.+..++..|+-++.-+..+. ...... .+.++.|+.+-+.-+.++..
T Consensus 487 ~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 487 IEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence 95443 33333334677777888 5578888889999999888775 222222 23333333333333455555
Q ss_pred HHHHHHH-HhhcC----ChHHHHHHHHcCChHHHHHhcCCC------CcchHHHHHHHHHHhhc------CChHHHHHHH
Q 017651 263 DACWALS-YLSDG----TNDKIQAVIEAGVCPRLVELLGHP------SPSVLIPALRTVGNIVT------GDDFQTQCII 325 (368)
Q Consensus 263 ~a~~~l~-~l~~~----~~~~~~~~~~~~~~~~L~~lL~~~------~~~v~~~a~~~l~nl~~------~~~~~~~~~~ 325 (368)
.++..+. +.+.. .++....+++ .+++....++..+ ..+-+..|.++|..+.+ ..+...+ -+
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~l 638 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YL 638 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HH
Confidence 5555433 33322 1122111111 2333333444222 12334555555554432 1222222 22
Q ss_pred HcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 326 ~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.....|.+--+|.+. ..++-.+|+-.+-+.+-
T Consensus 639 e~slypvi~Filkn~-i~dfy~Ea~dildg~tf 670 (970)
T COG5656 639 EVSLYPVISFILKNE-ISDFYQEALDILDGYTF 670 (970)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhH
Confidence 335666666667776 66777777777666553
No 225
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.22 Score=43.38 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=93.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 241 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 241 (368)
+...+..|.+++.+....++..+..|+...++.....+.. .+..+++-+ ++....+-+.+|.++..+...........
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888888888888876655433333322 456666666 67778899999999999987753333322
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651 242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
....+-.|..--..++.-|+.+|-.+|..++.+.... -+++.|...+.+.++.++..++.+..+..
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2222222221112345678999999999888664333 24677777788888888877777666554
No 226
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.07 E-value=2.8 Score=34.39 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=95.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
++.+++...+++...+..|+..+.-++...=-.|.. ++|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 678888888999999999999999887654233333 5899999999988 999999999999998855544433
Q ss_pred HhhCCChHHHHHhhC----CCCHHH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-------cchhHHH
Q 017651 156 VIDHGAVPIFVKLLA----SPSDDV---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-------AKLSMLR 221 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~----~~~~~v---~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-------~~~~~~~ 221 (368)
-...| +..-..+-. +..... ....+..+..+...+...|..+ +..+++.+... ....-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 33333 333222221 111111 4455666667776555566554 55566666332 1344456
Q ss_pred HHHHHHHHhhcCC
Q 017651 222 NATWTLSNFCRGK 234 (368)
Q Consensus 222 ~a~~~L~~l~~~~ 234 (368)
.++++..||+.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 6777777877654
No 227
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.06 E-value=0.28 Score=40.25 Aligned_cols=109 Identities=9% Similarity=0.156 Sum_probs=73.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCCCcchHHHhhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhh
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNVA 188 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nla 188 (368)
...+++.+....... ..+.-|.. +-..+......+++.||+..|+.+|.. .+..+...++.||-.|.
T Consensus 68 p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 455777776654221 22222222 222334677888889999999998863 44578889999999998
Q ss_pred CCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651 189 GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 189 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
.........+...+++..|...| .+++..++..++..|+.+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 77655544555567888888888 7888999999999999887
No 228
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.97 E-value=0.35 Score=50.71 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCc
Q 017651 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300 (368)
Q Consensus 221 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 300 (368)
..+.|+...++...+. .....+.+..++..|..+...++..|+.||+.+...++... ....+-..+..-+.+.+.
T Consensus 795 ~~a~li~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchh
Confidence 3455555555544321 11224567778888888889999999999999998765432 112233344555666678
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 301 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
.||+.|+..+|..+...++.... ....+..-+.++ .-.|||.+...+..+|..+|+
T Consensus 870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCC
Confidence 89999999999888776655442 344566656666 678999999999988876654
No 229
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.96 E-value=2 Score=42.00 Aligned_cols=127 Identities=19% Similarity=0.164 Sum_probs=87.6
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQA 281 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 281 (368)
+++.|...+ .+.+..++..++..+..++..-+ .......++|.+-.+. ++.+..++.+++-|++.++.. .+
T Consensus 390 IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD- 461 (700)
T KOG2137|consen 390 ILPLLYRSL-EDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LD- 461 (700)
T ss_pred HHHHHHHHh-cCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HH-
Confidence 556666666 77788999999999998886533 1122245777766653 566789999999999998822 12
Q ss_pred HHHcCChHHHHHhc---CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651 282 VIEAGVCPRLVELL---GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 282 ~~~~~~~~~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
...+++.+..++ +..++.+....+++..++....... ..++.+.++|.++.+...+
T Consensus 462 --~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 462 --KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred --HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 123344444444 5678888888888888887655433 4466668889888887766
No 230
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.85 E-value=1.7 Score=42.74 Aligned_cols=235 Identities=17% Similarity=0.179 Sum_probs=123.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCCCCchHHHHhcC---cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLS-IERSPPIEEVIQSG---VVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s-~~~~~~~~~~i~~g---~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 150 (368)
.+-.|++.+..-+.+........+.. .+ .......+.+...| .+..+.+.+.+..-+. .+|+.++..+...-.
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP--LEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhh
Confidence 35566666665555444444433332 10 00011123333344 3455566666544211 233333333322111
Q ss_pred cchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhcc---ccchhH
Q 017651 151 ENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNE---RAKLSM 219 (368)
Q Consensus 151 ~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~----~~~~~~~~i~~~~~i~~l~~~l~~---~~~~~~ 219 (368)
.-.. ..+..+..++.+ +...++..|+-+++++.. +.+.+...+. ...++.+...|.. ..+..-
T Consensus 389 ~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 389 YPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred cCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchh
Confidence 1111 245666777765 356788888888888863 2221111111 2256667666633 234555
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-C--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC
Q 017651 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-S--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (368)
Q Consensus 220 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 296 (368)
+..++.+|+|+... ..++.+..++. . .+..++..|+|+|..++...+... -+.+++++.
T Consensus 463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~ 524 (574)
T smart00638 463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYL 524 (574)
T ss_pred eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHc
Confidence 56678888887754 35566666665 2 247899999999999986555442 345566653
Q ss_pred C--CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHH
Q 017651 297 H--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 346 (368)
Q Consensus 297 ~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~ 346 (368)
+ .++++|..|+.+|-..- |.. ..+..+...+..+.+..|+
T Consensus 525 n~~e~~EvRiaA~~~lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 525 NRAEPPEVRMAAVLVLMETK---PSV-------ALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred CCCCChHHHHHHHHHHHhcC---CCH-------HHHHHHHHHHhhcCcHHHH
Confidence 3 45788888876655431 211 1245566666555344443
No 231
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=5.8 Score=39.15 Aligned_cols=260 Identities=14% Similarity=0.094 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHhhcC-CCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017651 90 LQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (368)
Q Consensus 90 ~~~~a~~~l~~l~s~-~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (368)
...-|++.+..+.+. ..+.+...+.+.=+++.++..++++. --++..||..+..+..+ .....+-..+.+....+
T Consensus 432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is~~eeD---fkd~~ill~aye~t~nc 507 (970)
T COG5656 432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFISTIEED---FKDNGILLEAYENTHNC 507 (970)
T ss_pred HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHH
Confidence 344455666655440 12444555555556788888888877 68999999999999543 33333333467777888
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh-c--cccchhHHHHHHHHHHH-hhcCCCCCChhhhhc
Q 017651 169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL-N--ERAKLSMLRNATWTLSN-FCRGKPQPPFDQVRP 244 (368)
Q Consensus 169 L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l-~--~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~ 244 (368)
|++.+-.++-.|+-||.-+..+. +..+.+.. .+|..++.| . +.-+.++...+...+.. ++..-..-.......
T Consensus 508 l~nn~lpv~ieAalAlq~fi~~~-q~h~k~sa--hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~ 584 (970)
T COG5656 508 LKNNHLPVMIEAALALQFFIFNE-QSHEKFSA--HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGS 584 (970)
T ss_pred HhcCCcchhhhHHHHHHHHHhch-hhhHHHHh--hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHH
Confidence 88888889999999998888765 34344443 244444332 1 23345555544443332 222211111122223
Q ss_pred hHHHHH----HhhcCC-C-----HHHHHHHHHHHHHhhc------CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHH
Q 017651 245 ALPALA----QLVHSN-D-----EEVLTDACWALSYLSD------GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 308 (368)
Q Consensus 245 ~~~~L~----~lL~~~-d-----~~v~~~a~~~l~~l~~------~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~ 308 (368)
+....+ .++..+ | .+=+..|.+.|.-+.. ..++.... ......|.+--.|++.-.+.-..|+.
T Consensus 585 Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~slypvi~Filkn~i~dfy~Ea~d 663 (970)
T COG5656 585 LVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEVSLYPVISFILKNEISDFYQEALD 663 (970)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333332 333222 1 1223344444443321 12222222 22244555555566666777788888
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-C
Q 017651 309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-G 359 (368)
Q Consensus 309 ~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~ 359 (368)
++-+.+-...+.. -+.-|+.+.+..++.++....--.+++-++.|+.- |
T Consensus 664 ildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 664 ILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred HHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 8877664333222 12227778888888777323677889999999875 5
No 232
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.61 E-value=0.31 Score=34.71 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=59.6
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
+...+..+.++.+.+|..++..|..++...+ ....-..+++..+...|+++ ++.|--.|+-+++.++...|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH
Confidence 5567778889999999999999999998766 12122347788899999999 9999999999999999876663
No 233
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.56 E-value=0.56 Score=45.59 Aligned_cols=136 Identities=18% Similarity=0.130 Sum_probs=95.0
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237 (368)
Q Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 237 (368)
...++|.|..-+++.+..+++.++..+...+..-+ -.++..-++|.+..+..+..+..++.+++-|+..+.+.-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--- 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--- 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence 34578888888889999999999999999985432 133444467778777667788999999999999988331
Q ss_pred ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCc
Q 017651 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300 (368)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 300 (368)
+...+...+..+.+.....|+.+..-...+...+.....+. ..++...++|.++.+...+.-
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence 11122234445555567788999888888887777543332 344556788888888766543
No 234
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=6.6 Score=36.77 Aligned_cols=258 Identities=13% Similarity=0.068 Sum_probs=134.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC--cchHHHhhC
Q 017651 82 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--ENTKVVIDH 159 (368)
Q Consensus 82 ~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~ 159 (368)
...+++...+..|++.|.+.+++. +...... ..-.+..++.-|-++.+.+|+.+++.+|+.+...-. +....++
T Consensus 266 ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l-- 341 (533)
T KOG2032|consen 266 KATDPSAKSRGMACRGLGNTASGA-PDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL-- 341 (533)
T ss_pred hccCchhHHHHHHHHHHHHHhccC-cHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--
Confidence 334566778889999999998863 2112111 222355566656555558999999999999876311 1111111
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHh--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLS--QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 236 (368)
.+.-.+..+..+.+++++..+..+++.|+.-.. ..++.+.+ .+...+++-.| +++++.+ ..||......|. |+
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~d~~p~v-a~ACr~~~~~c~--p~ 417 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-QDPNPYV-ARACRSELRTCY--PN 417 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-CCCChHH-HHHHHHHHHhcC--ch
Confidence 233445557778899999999888888762110 12222221 12344555555 5555544 345555555553 22
Q ss_pred CChhhhhchHHHHHHhhcCCCHHH-HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651 237 PPFDQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.........++...+.. -+.. .-+.-|++ .+....++....+ .....-++++.-+.++..+....++..-
T Consensus 418 l~rke~~~~~q~~ld~~---~~~~q~Fyn~~c~-~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 418 LVRKELYHLFQESLDTD---MARFQAFYNQWCI-QLNHIHPDILMLL-----LTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred hHHHHHHHHHhhhhHHh---HHHHHHHHHHHHH-HHhhhCHHHHHHH-----HHhchhheecchHHHHHHHHHHHHHHHH
Confidence 22222233333221110 0111 01122221 2222223332222 1223334455556788888888887765
Q ss_pred CChHHHHHHHHc-CChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 316 GDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 316 ~~~~~~~~~~~~-g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
.-........+. -+...+..+..++ -+++++.|..++.-+.
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS 530 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence 433222222221 2334455555666 8999999988887654
No 235
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.43 E-value=4.5 Score=44.75 Aligned_cols=266 Identities=14% Similarity=0.093 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCC--CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC--
Q 017651 85 SDDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG-- 160 (368)
Q Consensus 85 ~~~~~~~~~a~~~l~~l~s~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-- 160 (368)
+.+..+...|+..|+++...- ..+....-....++.+|..++.+..+.+++...+.|+.++..... .-+..|
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcCcH
Confidence 345678888888888775421 111111123445788888888776668999999999999876322 223334
Q ss_pred -ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh----
Q 017651 161 -AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF---- 230 (368)
Q Consensus 161 -~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~-----~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l---- 230 (368)
++..|-....++++.+.+.|..++..|..+.-.. .+.+.+ .+..+...-.+..+.++--.++..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 2233333334677899999999998887542110 011111 3344444443333333333444444433
Q ss_pred hcCCC-----------------------C------CChhhhhchHHH---HHHhhcCCCHHHHHHHHHHHHHhhcCC---
Q 017651 231 CRGKP-----------------------Q------PPFDQVRPALPA---LAQLVHSNDEEVLTDACWALSYLSDGT--- 275 (368)
Q Consensus 231 ~~~~~-----------------------~------~~~~~~~~~~~~---L~~lL~~~d~~v~~~a~~~l~~l~~~~--- 275 (368)
+.+.- . .........+|. |.++..++.++|+..|+.+|..+....
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 11100 0 000001223343 444456678999999999998776431
Q ss_pred --hHHHHHHHHcCChHHHHHhcCCC------------------C--------cchHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651 276 --NDKIQAVIEAGVCPRLVELLGHP------------------S--------PSVLIPALRTVGNIVTGDDFQTQCIITY 327 (368)
Q Consensus 276 --~~~~~~~~~~~~~~~L~~lL~~~------------------~--------~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 327 (368)
++.-..++. +++-.++..+.+. + .+....|++.+.++....-+....+++
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 222222333 3444444333210 0 022333444444443322223333333
Q ss_pred CChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 328 GALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 328 g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
+++..|..++..+ +..+.+-.+-+|.++...
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHH
Confidence 6677777777777 888999999999998863
No 236
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=93.40 E-value=0.75 Score=51.45 Aligned_cols=268 Identities=14% Similarity=0.169 Sum_probs=141.6
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCC--CchHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC
Q 017651 84 WSDDSSLQLEATTQFRKLLSIERS--PPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 159 (368)
Q Consensus 84 ~~~~~~~~~~a~~~l~~l~s~~~~--~~~~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 159 (368)
...+++.+..+...+..++..... ......+ ...++..+..+-....++.++......+. ...-......
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~ 564 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP 564 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence 345667777776666655543211 0000000 11222333332222222555554444333 2222334445
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 239 (368)
+.+..+...+.++.-.+++.+...+++++..+|.+.-..+....+..+..+. .+.-..+......-+..+....+.-..
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 5667777778888889999999999999987764322111111111111111 111111111111111111111111111
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCCh
Q 017651 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 240 ~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
..+.+.+..++..++..++.+...+..+++.||..........++ ..++.+..-+ ...+..-+..++++++++.+...
T Consensus 644 ~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 644 PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 223445566777778888888899999999998654433333334 3444444444 44567778999999999987655
Q ss_pred HHHHHHHHc-CChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 319 FQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 319 ~~~~~~~~~-g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
...+...+. -++..+...+.......++.++...++++.+-
T Consensus 723 ~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 723 YVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred eEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 433322222 45677777777776778899999998877653
No 237
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.27 E-value=1.2 Score=38.86 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHhhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--Ch
Q 017651 133 QLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLA----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--AL 204 (368)
Q Consensus 133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~--~i 204 (368)
+-+.-++-.+.-++.+ +.....+...+ ....+..++. +..+..+-.++++++|+....+ .+..+..+. .+
T Consensus 78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence 3466666666655553 33333333322 2344444433 2467888899999999998754 556666542 23
Q ss_pred HHHHHHhcccc---chhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-C-CCHHHHHHHHHHHHHhhcCChH
Q 017651 205 IPLLAQLNERA---KLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH-S-NDEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 205 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~-~-~d~~v~~~a~~~l~~l~~~~~~ 277 (368)
...+..+.... +..++..++..+.|++-.. ..........++..+.+.+. . .|+++...++-++|++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 33333332222 7888889999999987543 11122222345666666443 2 5899999999999999976655
Q ss_pred HH
Q 017651 278 KI 279 (368)
Q Consensus 278 ~~ 279 (368)
..
T Consensus 236 ~~ 237 (268)
T PF08324_consen 236 AK 237 (268)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 238
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=7.2 Score=38.80 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=152.4
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651 75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE 151 (368)
Q Consensus 75 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 151 (368)
....++++++.. |.-++..+++.++-.+..- +-..+.+. -.++...+.+++..-..-+-+...+..|+.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 356677777765 6778888888888776542 22222221 1334444555665433246677777777776654333
Q ss_pred chHHHhhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhcc---ccchh
Q 017651 152 NTKVVIDHGAVPIFVKLLA------SPSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNE---RAKLS 218 (368)
Q Consensus 152 ~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nla~----~~~~~~~~i~~~~~i~~l~~~l~~---~~~~~ 218 (368)
..... ...+++++. .+.+-++...+.+|.|+.. .++.+.. ++-+.+++-.. .+..-
T Consensus 606 ~I~P~-----~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~ 674 (978)
T KOG1993|consen 606 HIAPY-----ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVY 674 (978)
T ss_pred hhhHH-----HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceee
Confidence 32211 122222221 2456677777888888852 2222211 23333333211 11233
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651 219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 298 (368)
+.+.+...-.....+.+.-.. ....++|.+...+....+.++....-.=+|+.-.+... -.....|+++.+..++.+-
T Consensus 675 L~EDgmeLW~~~L~n~~~l~p-~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dv 752 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNSQKLTP-ELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDV 752 (978)
T ss_pred hhhhHHHHHHHHHhcccccCH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHh
Confidence 444444333333333322222 22467888888886554444333322333444333332 2233458889999998766
Q ss_pred CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCC-CCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017651 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQV 366 (368)
Q Consensus 299 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~i~~ 366 (368)
..+-....+.++..+...++ ........++++.+..-+.. ...|.+--.-..+++.+.--+|+-+..
T Consensus 753 r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~ms 820 (978)
T KOG1993|consen 753 RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMS 820 (978)
T ss_pred hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHH
Confidence 56666778888888877665 45556667888888765532 225677777777788877777766543
No 239
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.97 E-value=15 Score=39.30 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=59.2
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365 (368)
Q Consensus 286 ~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~ 365 (368)
|++|.|-.-|.+.+..+|..|...+|.+.+....... =-.......++.-+.+. +..+|.++.-...++...+++...
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7788888888889999999999999999876653322 00113455556666677 889999999999999887776654
Q ss_pred h
Q 017651 366 V 366 (368)
Q Consensus 366 ~ 366 (368)
+
T Consensus 337 ~ 337 (1266)
T KOG1525|consen 337 A 337 (1266)
T ss_pred H
Confidence 3
No 240
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.90 E-value=5 Score=38.13 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=105.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccc---hhHHHHHHHHHHHhhcCCCCCCh
Q 017651 163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK---LSMLRNATWTLSNFCRGKPQPPF 239 (368)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~---~~~~~~a~~~L~~l~~~~~~~~~ 239 (368)
..+...+.+++..-+..++.-|..++.+. .+...++...++..|.+++..... .++....+.+++.+-...- ...
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW 163 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW 163 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence 44556666666666666888899998885 566778888899999999954433 4555555556555554421 111
Q ss_pred hhh-hchHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651 240 DQV-RPALPALAQLV--HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316 (368)
Q Consensus 240 ~~~-~~~~~~L~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 316 (368)
..+ ..++-....+. +.-+..+...|+..+-++..+++...+.+.+.--+..|+.+|...+..++..|+..|..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 111 12332233332 233567788899999999988887777888888899999999888888888888888877654
Q ss_pred Ch
Q 017651 317 DD 318 (368)
Q Consensus 317 ~~ 318 (368)
.+
T Consensus 244 a~ 245 (713)
T KOG2999|consen 244 AP 245 (713)
T ss_pred CC
Confidence 43
No 241
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.75 Score=40.17 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=96.0
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 017651 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (368)
Q Consensus 204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 283 (368)
+...+..| .+.+.......+..+..|+..-+..-...+..++..+++-+.+....|-..||.+++-+...-.+.+...
T Consensus 90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~- 167 (334)
T KOG2933|consen 90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE- 167 (334)
T ss_pred HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34445555 5666777777777777777664433334445677777777788888899999999999886654444432
Q ss_pred HcCChHHHHHhc-C---CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 284 EAGVCPRLVELL-G---HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 284 ~~~~~~~L~~lL-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+..++..| . .++.-+++.|-.+|-.++..-..+ .+++.|+..+++. ++.++..++.+..++.-
T Consensus 168 ----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 ----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred ----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 33344333 2 234457888988888887654322 3467788888888 89999999988887764
No 242
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.87 E-value=1.4 Score=35.77 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCh-hhh-----------hch-HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651 219 MLRNATWTLSNFCRGKPQPPF-DQV-----------RPA-LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~~~~~~-~~~-----------~~~-~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 285 (368)
++..|+.+|..+++..+...+ ..- .+. .+.+.-++.++++.++..|+.++..|.++........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 455667777777766222211 110 111 2234445577889999999999999998765443333211
Q ss_pred -------------------CChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHhhCCCCCcc
Q 017651 286 -------------------GVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQC-IITYGALPYLLGLLTHSHKKS 344 (368)
Q Consensus 286 -------------------~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~-~~~~g~l~~l~~ll~~~~~~~ 344 (368)
++-..|+..|. ..+..+....+.+++.++...+...-. =+-..++..+..++.+. +++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCc
Confidence 11233444443 346778889999999999888743321 01113445556677787 899
Q ss_pred HHHHHHHHHHHHhcC
Q 017651 345 IKKEACWTISNITAG 359 (368)
Q Consensus 345 v~~~a~~~l~nl~~~ 359 (368)
++-.+..+++-+.+.
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999888763
No 243
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.76 E-value=9.3 Score=36.42 Aligned_cols=244 Identities=14% Similarity=0.116 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017651 89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168 (368)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 168 (368)
..+..|+..+...+...+-.++..+ -...-.++.....++.|..+...|..++.+...... ... ..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence 4566677777766654323233332 222234555554467888888888888875433211 111 122222
Q ss_pred hC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc--------------------------cchhHHH
Q 017651 169 LA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER--------------------------AKLSMLR 221 (368)
Q Consensus 169 L~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~--------------------------~~~~~~~ 221 (368)
+. ...++-...-+.+|..|+.++... ...+.+..+.+..-+... .+.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 33 233444455666677777666444 223445555555544211 1233344
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcC
Q 017651 222 NATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLG 296 (368)
Q Consensus 222 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~ 296 (368)
.....+.|+.... .......+.+++..++.+.. +.++.....++..+-.+... +++. ++.++..|.
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s---------l~~~i~vLC 223 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES---------LSPCIEVLC 223 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH---------HHHHHHHHh
Confidence 5555666666554 23333444556665555532 33444445555555444432 2222 223333331
Q ss_pred --CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC--CC---CCccHHHHHHHHHHHHhcCC
Q 017651 297 --HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT--HS---HKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 297 --~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~--~~---~~~~v~~~a~~~l~nl~~~~ 360 (368)
........++-.++.||+...-.+ ..+..|..+|. ++ .+..+-+.|...+..+..|.
T Consensus 224 si~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 224 SIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred hHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 122367778888999998644322 13555777773 22 14566678888888887765
No 244
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.61 E-value=1.6 Score=42.44 Aligned_cols=133 Identities=15% Similarity=0.095 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 017651 172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251 (368)
Q Consensus 172 ~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ 251 (368)
+++.++..|--+|..+..-+.++.. + .+|.++..+.++++|.++.++.-.++.+.-.... .....-..|..
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~---e--hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS---E--HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADEHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH---H--HHHHHHHHHhhCCCcceeccceeeccccceehhh----hhHHHHHHHHH
Confidence 6788998888888887644433322 2 5899999998899999999998888766543211 11234456777
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 252 lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
-|.+.+..|+..++.++.+|.-.+.-. -.|-++.++..|.+++..+..-|-..+..++....
T Consensus 979 rL~De~~~V~rtclmti~fLilagq~K-----VKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILAGQLK-----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHcccee-----eccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 888889999999999999988543211 24778899999999999998888888888887654
No 245
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.57 E-value=9.1 Score=35.84 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=112.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHHhcc------ccchhHHHHHHHHHHHhhcCC
Q 017651 164 IFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNE------RAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nla~~~~---~~~~~i~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.+..++...+++-+-.++.....++.+.. ..+..+.+.=+++-+-+++.. .++.-.+.-+...|..+|+.+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35566666777778888888888886542 234455665455555555532 123344455678888999987
Q ss_pred CCCChhhhhchHHHHHHhhcCC-CHH------HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCc-chHHHH
Q 017651 235 PQPPFDQVRPALPALAQLVHSN-DEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP-SVLIPA 306 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~-d~~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~v~~~a 306 (368)
.-.....+-.-+|.|..++... |++ +..++..+|..++...... ..++..|.++.+.+.-.-++. .-..-+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 6555666667889999888532 333 7888889998888875544 778889999999877543332 223334
Q ss_pred HHHHHHhhcCCh---HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 307 LRTVGNIVTGDD---FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 307 ~~~l~nl~~~~~---~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+.++.-.+++.+ +....+.. ++..+..=+... +...|-+.|..|+.+..
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence 443333333221 11111111 122222222222 44566677777765544
No 246
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.54 E-value=1.6 Score=43.67 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=103.7
Q ss_pred HHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH--HHHHHhccccch
Q 017651 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI--PLLAQLNERAKL 217 (368)
Q Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~--~l~~~l~~~~~~ 217 (368)
+|+++...+++....+++.|++..+...+.. .+.++...++..++|++...+ .++.......+. .+-.++....+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 7788888899999999999999999999985 667899999999999996542 222222222222 333344344455
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhh------------------------h-hchHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 017651 218 SMLRNATWTLSNFCRGKPQPPFDQ------------------------V-RPALPALAQLVH-SNDEEVLTDACWALSYL 271 (368)
Q Consensus 218 ~~~~~a~~~L~~l~~~~~~~~~~~------------------------~-~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l 271 (368)
+.-..++..|+.+..+.+...... . ..+.|.+..++. +..+..+..|+|++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 777788888887776532110000 0 111121333333 33467788999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhc
Q 017651 272 SDGTNDKIQAVIEAGVCPRLVELL 295 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~L~~lL 295 (368)
+...++....+.+.|+++.+...-
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcc
Confidence 998888777788888888877765
No 247
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.46 E-value=5.2 Score=32.81 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=97.2
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 281 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 281 (368)
.++.++++. .+++..++..|+..+.-+.+.. -.| ..++|.++.+..++++.++..|...+..+....++....
T Consensus 9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 567778866 7888999999999999888754 111 258999999999999999999999999998776655554
Q ss_pred HHHcCChHHHH--HhcCCCCc-ch---HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC-------CCccHHHH
Q 017651 282 VIEAGVCPRLV--ELLGHPSP-SV---LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-------HKKSIKKE 348 (368)
Q Consensus 282 ~~~~~~~~~L~--~lL~~~~~-~v---~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~-------~~~~v~~~ 348 (368)
-...|+-...- ..+..+.. .. ....+.-+..++.++...+..++. .+...+... ..+.-...
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHHH
Confidence 44444322221 11222211 11 455666666777766656664443 344444332 13455677
Q ss_pred HHHHHHHHhc---CCHHHh
Q 017651 349 ACWTISNITA---GNRDQI 364 (368)
Q Consensus 349 a~~~l~nl~~---~~~~~i 364 (368)
.+++.-|++. .+.+.+
T Consensus 158 ~~Fla~nLA~l~y~~~~E~ 176 (187)
T PF12830_consen 158 LLFLAENLATLPYQTQDEV 176 (187)
T ss_pred HHHHHHHHhcCCCCChhHH
Confidence 8888888875 444443
No 248
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=2.6 Score=41.16 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=109.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhC-CCh----hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CC
Q 017651 163 PIFVKLLASPSDDVREQAVWALGNVAG-DSP----RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ 236 (368)
Q Consensus 163 ~~L~~lL~~~~~~v~~~a~~~L~nla~-~~~----~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~ 236 (368)
|.|.+-|+.++..++..|+..+.++.- .+| +-.+.+++. -...+.++| .++-+.++..+..-++.+.... .-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHH
Confidence 556667777999999999999999862 111 223445543 357778888 7777888777665555444322 11
Q ss_pred CChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651 237 PPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 237 ~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.....+..++..+..-+. ....+|+......|-++...+... .+.+. +++.+-..|.+.+..+|.++...|..|-.
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch--hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 111122233333333333 334689999999999998775433 22222 34555556667788999999988888754
Q ss_pred CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 316 ~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
..... +++-=-++.++..|..+ +..+.+.-+..|.|.+
T Consensus 332 vra~~---f~~I~~~d~~l~~L~~d-~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 332 VRAAK---FWKICPMDHILVRLETD-SRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hhhhh---hhccccHHHHHHHHhcc-ccHHHHHHHHHHHHhh
Confidence 33222 22222355556666665 4445544444444444
No 249
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=92.02 E-value=7.6 Score=33.74 Aligned_cols=214 Identities=20% Similarity=0.158 Sum_probs=119.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCC--CCch-HHHH-----------hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 017651 80 VAGVWSDDSSLQLEATTQFRKLLSIER--SPPI-EEVI-----------QSGVVPRFVEFLMREDYPQLQFEAAWALTNI 145 (368)
Q Consensus 80 ~~~l~~~~~~~~~~a~~~l~~l~s~~~--~~~~-~~~i-----------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l 145 (368)
+.+|.+..+..-..|+..+.++++.-+ .+.. +.+. -.|+.+.+++=|.++. .-..++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 445666666666677777776665421 1111 1111 1233444444455544 344455566665
Q ss_pred hcCC-------CcchHHHhhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc
Q 017651 146 ASGT-------SENTKVVIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER 214 (368)
Q Consensus 146 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~ 214 (368)
+... ++.+-.+.-.+.+|.++.-+.+++ ......++..|+.+|.... ...+..++..+...
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 5421 112222222345677777777766 2445567788888884421 12344455444332
Q ss_pred ---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 017651 215 ---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (368)
Q Consensus 215 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 291 (368)
+..+....++..|..-.. |.. ....+-.+..+|...-+.++..++.+|..+...-+-... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--PDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--chh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 234555555555554321 221 124666788888888899999999999999866433322 445678889
Q ss_pred HHhcCCCCcchHHHHHHHHHHhhc
Q 017651 292 VELLGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 292 ~~lL~~~~~~v~~~a~~~l~nl~~ 315 (368)
.++|..+ ....|+.++-++..
T Consensus 234 lrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 234 LRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred HHHhCCc---cHHHHHHHHHHHHh
Confidence 9998654 45667777766654
No 250
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.86 E-value=7.4 Score=33.24 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=114.4
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCC
Q 017651 82 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA 161 (368)
Q Consensus 82 ~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 161 (368)
.-+..++..+...+..|..++..+ +..... ++..+..+...+. .+.+.-+...+..+...++... +.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~-~~~~~~-----v~~~L~~L~~~~~-~~~~~~~~rLl~~lw~~~~r~f------~~ 75 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHK-NVCVPP-----VLQTLVSLVEQGS-LELRYVALRLLTLLWKANDRHF------PF 75 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccC-ccchhH-----HHHHHHHHHcCCc-hhHHHHHHHHHHHHHHhCchHH------HH
Confidence 344677888889999999887654 122222 3666777777766 6667778888888887544322 23
Q ss_pred hHHHHHh--h------C--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651 162 VPIFVKL--L------A--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 162 i~~L~~l--L------~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
+..++.. + . +...+.......++..++...|.. -...++.+...|.++.++.++..++.++..||
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3333333 0 1 123444555567888888777651 11256777777755557778888999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhcCCCCc
Q 017651 232 RGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLGHPSP 300 (368)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~L~~lL~~~~~ 300 (368)
... .. ........+.+-+..+ .+.+....+..+..+..+.-+.. .......++..+-++..+.+.
T Consensus 151 ~~~-vv---d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 151 EAE-VV---DFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHh-hc---cHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 542 11 1123444555555433 46666666666655554422221 112333455555555555543
No 251
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=91.85 E-value=4 Score=40.74 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=106.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.|..|+.+|.+.+......+-..+...+..++.+ -++..|+++.-..++ ..|+.+|..+-. +..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 5889999999999888777777777776654221 136667776555442 344555554422 3212
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
..+..|-.++.. +.-+-.++..|+.+....|..-..+.+...+..|+..|..+.+..+...|+.+|..|.=.-
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 233445555554 4567789999999998887777888999999999999988889999999999888877544
Q ss_pred CCCChhhhhchHHHHHHhh
Q 017651 235 PQPPFDQVRPALPALAQLV 253 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL 253 (368)
|......+..++.+...++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4333333344444444444
No 252
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.50 E-value=8 Score=35.47 Aligned_cols=241 Identities=18% Similarity=0.129 Sum_probs=124.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSPRCRD 196 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nla~~~~~~~~ 196 (368)
+..+++=+.+.....+|..++--|..-+. +++++..+...|.+..+++.+.+ ++..+...+ +.++.-++.+.+ .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 55566666644446788888888888777 58999999999999999998854 333243333 333444444443 222
Q ss_pred HHHhcCChHHHHHHhc--cc-----------------------------------------cchhHHHHHHHHHHHhhcC
Q 017651 197 LVLSQGALIPLLAQLN--ER-----------------------------------------AKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~--~~-----------------------------------------~~~~~~~~a~~~L~~l~~~ 233 (368)
.+...+....++.++. .. ...+-+.-+..++..+|..
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 2223333333344443 00 0111122233444444311
Q ss_pred C----------C--CC---ChhhhhchHHHHHHhhc----CC-------C-----HHHHHHHHHHHHHhhcCChHHHHHH
Q 017651 234 K----------P--QP---PFDQVRPALPALAQLVH----SN-------D-----EEVLTDACWALSYLSDGTNDKIQAV 282 (368)
Q Consensus 234 ~----------~--~~---~~~~~~~~~~~L~~lL~----~~-------d-----~~v~~~a~~~l~~l~~~~~~~~~~~ 282 (368)
. + .. ......|++..+++.+. .. + ......++.+|-+.+..+.+....+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 1 0 00 00011244666666653 11 1 1234446666666665544433333
Q ss_pred HHc--CChHHHHHhc-C---CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-------hhCC------CCCc
Q 017651 283 IEA--GVCPRLVELL-G---HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG-------LLTH------SHKK 343 (368)
Q Consensus 283 ~~~--~~~~~L~~lL-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~-------ll~~------~~~~ 343 (368)
+.. +.+..+...+ . ..-+.+...+++.+.|++..++..+..+-..++...+.. ++.- ....
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF 340 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence 332 3333333322 1 223445788999999999998766655544422222111 1110 1134
Q ss_pred cHHHHHHHHHHHHhcCCH
Q 017651 344 SIKKEACWTISNITAGNR 361 (368)
Q Consensus 344 ~v~~~a~~~l~nl~~~~~ 361 (368)
++.--+..++.|++..+.
T Consensus 341 D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 341 DILILALGLLINLVEHSE 358 (361)
T ss_pred hHHHHHHHhHHHheeeCc
Confidence 677788889999987543
No 253
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.31 E-value=2.2 Score=37.63 Aligned_cols=138 Identities=13% Similarity=0.180 Sum_probs=79.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch-HHHhhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDHGAVPIFVK----LLA--------SPSDDVREQAVWAL 184 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L 184 (368)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-+ ++. +++..+...+.-+|
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 5899999999988 9999999999999988433322 23566675544433 333 34566777777787
Q ss_pred HHhhCC----ChhhHHHHHhcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC
Q 017651 185 GNVAGD----SPRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN 256 (368)
Q Consensus 185 ~nla~~----~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~ 256 (368)
..++.- ....+......-.-+.++.-+.... .+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777421 1111222111111222333332222 36666666666666665433333334456677777666544
No 254
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=91.26 E-value=11 Score=34.08 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=107.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChhhHHHHHh-cCC-hHHHHHHhccc---c-c--------hhHHHHHHHH
Q 017651 162 VPIFVKLLASPSDDVREQAVWALGNVAG-DSPRCRDLVLS-QGA-LIPLLAQLNER---A-K--------LSMLRNATWT 226 (368)
Q Consensus 162 i~~L~~lL~~~~~~v~~~a~~~L~nla~-~~~~~~~~i~~-~~~-i~~l~~~l~~~---~-~--------~~~~~~a~~~ 226 (368)
+..+-..|.+....+...++..|..|+. ++......+.. .++ .+.+-+++... . + ++++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7777888888888888899999999998 66555444443 333 33455555211 1 1 2788888777
Q ss_pred HHHhhcCC-CCCChhhh--hchHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCC---hHHHHHHHHcCChHHHHHhcCCCC
Q 017651 227 LSNFCRGK-PQPPFDQV--RPALPALAQLVHSNDEEVLTDACWALSY-LSDGT---NDKIQAVIEAGVCPRLVELLGHPS 299 (368)
Q Consensus 227 L~~l~~~~-~~~~~~~~--~~~~~~L~~lL~~~d~~v~~~a~~~l~~-l~~~~---~~~~~~~~~~~~~~~L~~lL~~~~ 299 (368)
+..+.... +......+ .+.+..+.+.|..+++++....+.++.. +.... ......+.+...+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 66666654 22222222 5568888999999889999999999985 44332 233344566678888999777766
Q ss_pred c----chHHHHHHHHHHhhcCCh
Q 017651 300 P----SVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 300 ~----~v~~~a~~~l~nl~~~~~ 318 (368)
+ .+...+-..+..+|+...
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 6 889999999999987543
No 255
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.22 E-value=3.4 Score=39.55 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=78.9
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--h
Q 017651 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--P 192 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~--~ 192 (368)
-.|++..+++.+.+++ ..+|..++.+|+.++. ...-.+..+.+|.+..|..-+.+..+.++.+|+.+|+.+-... +
T Consensus 89 V~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 89 VAGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 3566777888888888 7999999999999887 3455566677788888888888888999999999999886433 3
Q ss_pred hhHHHHHhcCChHHHHHHhccccchhHHHHHHHH
Q 017651 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT 226 (368)
Q Consensus 193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 226 (368)
+. .....+...++.+++.++++.++.-
T Consensus 167 en-------~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 167 EN-------RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred HH-------HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 22 1345677778778888888876543
No 256
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.03 E-value=1 Score=35.10 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=60.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+++..+.+.|+++++..+..|+..|..++..........+...+++..|+.++....++.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999998887654334445677888999999999854448999999999888775
No 257
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.66 E-value=11 Score=32.87 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=127.7
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC--CCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651 80 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--EDYPQLQFEAAWALTNIASGTSENTKVVI 157 (368)
Q Consensus 80 ~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 157 (368)
=..|.++|+..|..|+..|..++..-.... ....-+..|+.++.+ .| ......++.++..+..... .....
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~-~~~~~- 77 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKN-FSPES- 77 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC-CChhh-
Confidence 346778999999999999999887531111 222225556655543 23 3445555677766664222 11111
Q ss_pred hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHH--hcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 158 DHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVL--SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 158 ~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
...++..+.+-.. +-....|..+...+..+..+.. ..+. ..+++..+++.+....|+.-.-.+...+..+...
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 0112233332221 2235667788888888876532 2232 2346888888887777998888888888887766
Q ss_pred CCCCChhhhhchHHHHHHhh----c-C-CCH-H-HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHH
Q 017651 234 KPQPPFDQVRPALPALAQLV----H-S-NDE-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305 (368)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~lL----~-~-~d~-~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~ 305 (368)
.+. ....+.+++.+.... . . +|+ . -+.+-..+|.......+... .-.++.|++-|.++.+.++..
T Consensus 155 ~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 155 FDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHH
Confidence 542 222223333333322 1 1 232 1 23344444444444333221 235889999999999999999
Q ss_pred HHHHHHHhhcCCh
Q 017651 306 ALRTVGNIVTGDD 318 (368)
Q Consensus 306 a~~~l~nl~~~~~ 318 (368)
++.+|...+...+
T Consensus 228 ~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 228 SLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHCC
Confidence 9999998876443
No 258
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.58 E-value=27 Score=37.42 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=73.7
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH
Q 017651 242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 321 (368)
Q Consensus 242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 321 (368)
+.+++|.|..-|.+++..++..|...++.+.......... -...+...++.-+.+.+..+|..++....++...++...
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~-~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE-TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc-cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 3567788888888999999999999999998765443220 011345555666667777888888877777654433111
Q ss_pred HHHH----------------------------------HcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 322 QCII----------------------------------TYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 322 ~~~~----------------------------------~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
.... ...++..+...+.+. .+.||++|+..|.-+-
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDK-k~~VR~~Am~~LaqlY 404 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDK-KIKVRKQAMNGLAQLY 404 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 1110 001444455555666 8899999988876553
No 259
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.46 E-value=2.4 Score=35.32 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhcCCCCCchH-HHHhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCCcchHHHhhCCChH
Q 017651 90 LQLEATTQFRKLLSIERSPPIE-EVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVP 163 (368)
Q Consensus 90 ~~~~a~~~l~~l~s~~~~~~~~-~~i~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~ 163 (368)
....|+..+.-++| .|.++ .+++..+--.+..+|...+ ..-+|..++.+++.+.. ++.+....+....++|
T Consensus 116 RvcnaL~lLQclaS---hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 116 RVCNALNLLQCLAS---HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred HHHHHHHHHHHHhc---CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 34455555555554 34444 3555554334456665332 24688899999999887 4444556677788999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-------ChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-------ALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 164 ~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~-------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
.+++++...+.--+..|+.+++.+.+++...+-..-... .+..++..+-......+...+..+-..||..
T Consensus 193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 999999998888888999999999988754322111111 1222222222334455556666666666544
No 260
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.11 E-value=6.4 Score=31.97 Aligned_cols=120 Identities=19% Similarity=0.250 Sum_probs=79.3
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651 242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
....+|.+++-|...+...+--|...+..|... ..+.+-.++ ..++..+-..|.+.++++...++.+|..|+...+..
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 357889999999887777777777777777655 444433333 246777778889999999999999999998777755
Q ss_pred HHHHHHc--CChHHHHHhhCCC----------CCccHHHHHHHHHHHHhc-CCHH
Q 017651 321 TQCIITY--GALPYLLGLLTHS----------HKKSIKKEACWTISNITA-GNRD 362 (368)
Q Consensus 321 ~~~~~~~--g~l~~l~~ll~~~----------~~~~v~~~a~~~l~nl~~-~~~~ 362 (368)
...+..+ .+++.+--+.+.. ....++.-..-+|..+-. |.++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 5555543 2233322111121 135667777777777765 4444
No 261
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.05 E-value=1.4 Score=34.35 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=61.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~ 148 (368)
+++..|.+.+.+.++.+++.|+..+..++.........++....++..|+.++....++.|+..++..+...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999998876553344456778889999999998844489999999999888763
No 262
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.95 E-value=3.6 Score=37.82 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhhH----------
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRCR---------- 195 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nla~~~~~~~---------- 195 (368)
..-|..|+..|..++....+....++ ...+-.+|. +.+..-++.|+..++.|+......+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 45677888888888873222222222 122223333 3567889999999999986552211
Q ss_pred --HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 017651 196 --DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL 268 (368)
Q Consensus 196 --~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l 268 (368)
..+....++|.|. -.....+-++..|++.+..+-..- ......+++|.++..|.+++.-|..+|+.++
T Consensus 301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l---~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL---PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1222222333332 112345667788899888877543 2345568999999999999999999998875
No 263
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=89.53 E-value=14 Score=32.60 Aligned_cols=198 Identities=12% Similarity=0.154 Sum_probs=134.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---CCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIE---RSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT 149 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~---~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~ 149 (368)
+.+..++..+...+.+.+..++..+.+++... +.+..+++. ...++..|+.--.. .+++-..+...|.....+
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~--~~~iaL~cg~mlrEcirh- 155 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN--TPEIALTCGNMLRECIRH- 155 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc--chHHHHHHHHHHHHHHhh-
Confidence 45788899999889889999988888886543 334444443 34455555555222 266666666666666663
Q ss_pred CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC---hHHHHHHhccccchhHHHHHHHH
Q 017651 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA---LIPLLAQLNERAKLSMLRNATWT 226 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~---i~~l~~~l~~~~~~~~~~~a~~~ 226 (368)
+...+.+....-+..+..++..++-++..-|..++-.+..........++..+. ++..-..|..+.+.-+.+.+...
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 556677777788888889998888888888888888776443333233333222 23323334378888899999999
Q ss_pred HHHhhcCCCCCChhhh----hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 227 LSNFCRGKPQPPFDQV----RPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 227 L~~l~~~~~~~~~~~~----~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
+..+..+.++...+.. ...+..+..+|+.....++..|.-...-....
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 9999888765543321 35667888889988888999888877766654
No 264
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=89.43 E-value=16 Score=33.05 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=104.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCCcchHHHhhCC--ChHHHHHhhCC-----CC--------HHHHHHHHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDHG--AVPIFVKLLAS-----PS--------DDVREQAVW 182 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g--~i~~L~~lL~~-----~~--------~~v~~~a~~ 182 (368)
++.+.+.|++.. +.+...++..|..++. ........+...- -.+.|..++.- .. +.+|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 778888899888 7888999999999998 6556666666542 23566666642 11 278877776
Q ss_pred HHHHhh-CCChhhHHHHH-hcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCC----hhhhhchHHHHHHhhcC
Q 017651 183 ALGNVA-GDSPRCRDLVL-SQGALIPLLAQLNERAKLSMLRNATWTLSN-FCRGKPQPP----FDQVRPALPALAQLVHS 255 (368)
Q Consensus 183 ~L~nla-~~~~~~~~~i~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~----~~~~~~~~~~L~~lL~~ 255 (368)
.+..+. ..++..+..++ +.+.+..+.+-| ..++.++...++.+|.. +......+. ...-...+..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 655554 44555555555 455677888888 45778888888888884 444431111 11225677888887777
Q ss_pred CCH----HHHHHHHHHHHHhhcCC
Q 017651 256 NDE----EVLTDACWALSYLSDGT 275 (368)
Q Consensus 256 ~d~----~v~~~a~~~l~~l~~~~ 275 (368)
+++ .+...+-..|..+|..+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCC
Confidence 766 78888888888888653
No 265
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.36 E-value=1 Score=37.91 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHhc-------CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch-HHHhhCC
Q 017651 89 SLQLEATTQFRKLLSIERSPPIEEVIQS-------GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDHG 160 (368)
Q Consensus 89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~-------g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g 160 (368)
+-|..|+.++.|+.-. ..+++.++.. .++..|+++|....++-.|+-|+-.|.+++.+++... ....+.+
T Consensus 139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 5688999999999554 3444444433 3566778888777668999999999999999766555 4455678
Q ss_pred ChHHHHHhhCCCC
Q 017651 161 AVPIFVKLLASPS 173 (368)
Q Consensus 161 ~i~~L~~lL~~~~ 173 (368)
.|..|+.++.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999997643
No 266
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.27 E-value=4.4 Score=40.20 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=89.3
Q ss_pred cHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCC-C-------CchHHHHhcCcHHHHHHhhc----CCCCHHHHHHH
Q 017651 75 SLPAMVAGVWS----DDSSLQLEATTQFRKLLSIER-S-------PPIEEVIQSGVVPRFVEFLM----REDYPQLQFEA 138 (368)
Q Consensus 75 ~i~~l~~~l~~----~~~~~~~~a~~~l~~l~s~~~-~-------~~~~~~i~~g~i~~Lv~lL~----~~~~~~v~~~a 138 (368)
.+..+..++++ +++.+...|+..+..++.... . .+....+...+++.|...|. ..+ ..-+..+
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 510 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGD-EEEKIVY 510 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccC-HHHHHHH
Confidence 34555555553 334455555555554433210 1 11122233445667766665 334 6788889
Q ss_pred HHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc-c
Q 017651 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASP---SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-R 214 (368)
Q Consensus 139 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~-~ 214 (368)
+.+|+|+-.. ..++.|..++.+. +..+|-.|+|+|..++...+.. +.+.++.++.+ .
T Consensus 511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT 571 (618)
T ss_dssp HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence 9999998752 3677888877765 6789999999999997776532 35667777644 3
Q ss_pred cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHH
Q 017651 215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACW 266 (368)
Q Consensus 215 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~ 266 (368)
.+.+++..|...|.. | .| . ...+..+...+..+ +.+|...+..
T Consensus 572 e~~EvRiaA~~~lm~-~--~P--~----~~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 572 EDPEVRIAAYLILMR-C--NP--S----PSVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp S-HHHHHHHHHHHHH-T-----------HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred CChhHHHHHHHHHHh-c--CC--C----HHHHHHHHHHHhhCchHHHHHHHHH
Confidence 467777777665554 2 11 1 13455566666543 4666555443
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.03 E-value=5.5 Score=30.58 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH-HHHHHcCChHHH
Q 017651 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALPYL 333 (368)
Q Consensus 255 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~~l 333 (368)
.+|+......|..+..-..++. .++..|.+.|.++++.++..|+.++-.++..+.... ..+.+..++..|
T Consensus 15 ~~D~~~il~icd~I~~~~~~~k---------~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGPK---------EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 4566666666666643321211 246778888899999999999999999998886544 445555788889
Q ss_pred HHhhCC--CCCccHHHHHHHHHHHHhc
Q 017651 334 LGLLTH--SHKKSIKKEACWTISNITA 358 (368)
Q Consensus 334 ~~ll~~--~~~~~v~~~a~~~l~nl~~ 358 (368)
..++.. ..++.|++.+.-.+.+-+.
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999876 3377899999888887764
No 268
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=88.94 E-value=16 Score=32.71 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhh
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVIDHG-----------AVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRC 194 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nla~~~~~~ 194 (368)
-++|..|+.|+.....+|++.+..+++.- ....++..|- +.++.-...|+.+|..+..++++.
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 68999999999999998888887766421 1112444333 223333445666666666666665
Q ss_pred HHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----CCCHHHHHHHHHHHH
Q 017651 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALS 269 (368)
Q Consensus 195 ~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-----~~d~~v~~~a~~~l~ 269 (368)
++.+..- ..+.. ..-......++.+..+|. ..|+.++.--+..|.
T Consensus 132 Ke~al~V-----------------------------~~~~~-~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALRV-----------------------------TEGDE-SSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT-------------------------------EE---STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHcc-----------------------------cCCCC-CCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 5544431 01100 000111123444444332 345667666666666
Q ss_pred HhhcCChHHHHHHHHc-CChHHHHHhcC---CCCcchHHHHHHHHHHhhc
Q 017651 270 YLSDGTNDKIQAVIEA-GVCPRLVELLG---HPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 270 ~l~~~~~~~~~~~~~~-~~~~~L~~lL~---~~~~~v~~~a~~~l~nl~~ 315 (368)
.-..+++.....+++. +.++.|+.... +.+.-++--++..||-+..
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 6666677777777766 47888888753 2345566666666665543
No 269
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=88.87 E-value=1.9 Score=33.18 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=58.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCH-HHHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP-QLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~-~v~~~a~~~L~~l~~ 147 (368)
+++..|.+.|+++++..+..|+..+..++.....+....+...+++..|+.++...... .|+..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999998887754334445566888999999999876533 388888888887765
No 270
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.86 E-value=1.9 Score=36.38 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHhhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCC
Q 017651 133 QLQFEAAWALTNIASGTSENTKVVIDHGA-------VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGA 203 (368)
Q Consensus 133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~ 203 (368)
.-|..|+.+|..++- .+.+.+.++..+- +..|++++.. .+.-.+|.|+-.|.|++..+.. +|....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 468999999999998 3666676666553 4555566654 6788999999999999976654 5566678889
Q ss_pred hHHHHHHhc
Q 017651 204 LIPLLAQLN 212 (368)
Q Consensus 204 i~~l~~~l~ 212 (368)
+..|+..+.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999994
No 271
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.71 E-value=9.5 Score=30.54 Aligned_cols=112 Identities=19% Similarity=0.258 Sum_probs=71.5
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC--ChHHHHHhhCCC-CHHHHHHHHHHHHHhh---CCC
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLASP-SDDVREQAVWALGNVA---GDS 191 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~-~~~v~~~a~~~L~nla---~~~ 191 (368)
.+..+..+|.+++ +.-+..++..+.-.+..++ .+.+.+.| .+..++.+|+.+ ...+.+.++.+|..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4666788888887 7888888888877777432 34443433 568888888874 4677888888888875 455
Q ss_pred hhhHHHHHhcC---ChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651 192 PRCRDLVLSQG---ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 192 ~~~~~~i~~~~---~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
|+....+.... +++.++.++.. ......++.+|..+....|
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCC
Confidence 55444443322 23344444421 4666677777777776544
No 272
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=88.67 E-value=6.4 Score=35.75 Aligned_cols=201 Identities=18% Similarity=0.094 Sum_probs=103.2
Q ss_pred HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--
Q 017651 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-- 191 (368)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-- 191 (368)
+...++..|+.++..+.++......+.+|..-...- ..-+...++..+..-+.+..+.+|..-+.+++.+....
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334457778888877655666666667766654321 01112235566677777777779998888888887511
Q ss_pred hhhHHHHHhcCChHHHHHHhcc---ccchhHH---HHHHHHHHHhhcCC-CCCChhh------hhchHHHHH---HhhcC
Q 017651 192 PRCRDLVLSQGALIPLLAQLNE---RAKLSML---RNATWTLSNFCRGK-PQPPFDQ------VRPALPALA---QLVHS 255 (368)
Q Consensus 192 ~~~~~~i~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~~~------~~~~~~~L~---~lL~~ 255 (368)
......+. .+++.|++.+.. .+....+ ..++.++..++... +...... ..+-=|.++ ++.+.
T Consensus 95 ~~~~~~~~--~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvysk 172 (339)
T PF12074_consen 95 SDSLKFAE--PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSK 172 (339)
T ss_pred chHHHHHH--HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhc
Confidence 11112221 267777777632 2211111 11222222222111 0000000 000000000 12222
Q ss_pred -CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHH
Q 017651 256 -NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQ 320 (368)
Q Consensus 256 -~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~ 320 (368)
.+++-....+.++..+..+.......-....+...++.++.++ .+.+|..|+.++..+...++..
T Consensus 173 l~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 173 LASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred cCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 3445555566666666544332221111234566788888777 7999999999999998887753
No 273
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=88.62 E-value=17 Score=33.38 Aligned_cols=156 Identities=17% Similarity=0.055 Sum_probs=95.1
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------CCCHHHHHHHHHHHHHhhc
Q 017651 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~----------~~d~~v~~~a~~~l~~l~~ 273 (368)
...+...|.+......+...+.++.-|++.+....-......+..|+.+-. ..|.++...++.||+|+..
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 344555554443444555566666667766533222222334444444321 2356899999999999999
Q ss_pred CChHHHHHHHHcCChHHHHHhcCC-----CCcchHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhCCCC------
Q 017651 274 GTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSH------ 341 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~l~~ll~~~~------ 341 (368)
++....+..........+.+.+.. --..+...-++.|--+..-. +...+.+.+.++++.+-+++.+.-
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 988877778877776666666521 11234444555555554333 445556677899999999997541
Q ss_pred --------CccHHHHHHHHHHHHhcC
Q 017651 342 --------KKSIKKEACWTISNITAG 359 (368)
Q Consensus 342 --------~~~v~~~a~~~l~nl~~~ 359 (368)
+-+..-+|..++.|++..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeec
Confidence 124556788888888863
No 274
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.44 E-value=3.2 Score=31.91 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=57.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcC
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~l~~~ 148 (368)
+++..|.+.|+++++..+..|+..+..++.....+....+....++..|+.++... .++.++..++..+...+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46888888999999999999999998887654233334455558888899999763 3379999999999888763
No 275
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=88.34 E-value=0.42 Score=27.83 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=24.1
Q ss_pred HHHhhcccCCCchHHHhhhHHHHHHHHHHhhhHHHHhhh
Q 017651 11 VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKR 49 (368)
Q Consensus 11 ~r~~~~k~~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr 49 (368)
+|...||+.+++.+.-+||++ ..+.-|.+|-+.++.-|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR~~-~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERRRE-FLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHHHH-HHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHHHH-HHHHHHHHhHHHHHhcc
Confidence 477889986555555555544 44777888877766544
No 276
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.07 E-value=3.4 Score=33.11 Aligned_cols=110 Identities=25% Similarity=0.213 Sum_probs=73.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCC---C
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---P 235 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~ 235 (368)
.+..+..+|.+++.+-+..++..+.-++..++ .+.+.+++ .+..++..|++.++..+...++.++..+...- |
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45667788888888889888888888887753 23443433 47888899977778888999999998887643 3
Q ss_pred CCChhhhhc----hHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 236 QPPFDQVRP----ALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 236 ~~~~~~~~~----~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
.-..+...+ +++.++.+++. +.....++.+|..+...
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 322233333 44444444443 46666777777766644
No 277
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.90 E-value=3.7 Score=31.99 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=61.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.++..|..-|.+.++.++-.|+.+|-.+..+. ..+...+...+++..|..++....+..++..++..+..-+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 35667777777888999999999999998874 5588888888999999999966678899999988888877654
No 278
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.85 E-value=3.2 Score=40.78 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=63.0
Q ss_pred chHHHHHHhhcCC----CHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhc----CCCCcchHHHHHHHHHH
Q 017651 244 PALPALAQLVHSN----DEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELL----GHPSPSVLIPALRTVGN 312 (368)
Q Consensus 244 ~~~~~L~~lL~~~----d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL----~~~~~~v~~~a~~~l~n 312 (368)
..+..+..++.++ .+.+...++-+++.++.. ..+.....+-..+++.+...| +..+...+..++.+|||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4556666776543 456777777777766531 111100111123445555544 23445556778888888
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhC-C-CCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651 313 IVTGDDFQTQCIITYGALPYLLGLLT-H-SHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 313 l~~~~~~~~~~~~~~g~l~~l~~ll~-~-~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+..... ++.+...+. + .....+|..|+|+|.+++...++.++.+
T Consensus 473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~ 518 (574)
T smart00638 473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV 518 (574)
T ss_pred cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 865332 233333333 1 1145788888898888877666666543
No 279
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.48 E-value=2.9 Score=32.37 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=58.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhcC
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~~ 148 (368)
+++..+.+.|+++++..++.|+..|..++.......-..+...+++..|++++.. ..++.|+..++..+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999888765534444566778899999999963 12378999999888887763
No 280
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=87.29 E-value=19 Score=31.33 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhCCC-------hhhHHHHHhcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhc
Q 017651 175 DVREQAVWALGNVAGDS-------PRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRP 244 (368)
Q Consensus 175 ~v~~~a~~~L~nla~~~-------~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 244 (368)
...+.++..|..++... .+.|-.+.-.+.+|.++..+.... .......++..|+.+|........ ..
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L---a~ 153 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL---AR 153 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH---HH
Confidence 34566777777776321 111222222234666666663333 124556778889999965322211 11
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHH
Q 017651 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324 (368)
Q Consensus 245 ~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 324 (368)
++....+-=..+..+....++..|..-.. ++. +...+..++.+|.++-+.++..++.+|..+....+....
T Consensus 154 il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-- 224 (262)
T PF14225_consen 154 ILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-- 224 (262)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence 22221111112234555555555543221 111 123577899999888889999999999999876653322
Q ss_pred HHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 325 ~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
...+++..+.++++++ .-.+|..+|-++..
T Consensus 225 ~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 225 HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 4446788899999776 56788888877765
No 281
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=87.18 E-value=3.3 Score=32.18 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=51.1
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHH
Q 017651 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324 (368)
Q Consensus 245 ~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 324 (368)
-...|+.+|..+...-....+..|.+=+.-..+. ..-++++++..++.-=.....--...|+..||.|..|..
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------ 95 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------ 95 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT------
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc------
Confidence 3345566665544333333444444433222222 233444445444433222223346778888888877654
Q ss_pred HHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 325 ~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+..|+++|.++ +..+...|+-+|+|..-
T Consensus 96 -----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 -----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp -----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred -----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67788889887 88899999999988553
No 282
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.09 E-value=2.2 Score=35.50 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-----CCcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHH
Q 017651 260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYL 333 (368)
Q Consensus 260 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l 333 (368)
-...++..+.-++++ ++....++++.+--.+..+|.. +-..+|..++++||.++...+ .....+....++|.+
T Consensus 116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 345566666666666 4555677777766666666632 235789999999999987654 566667778999999
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 334 LGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 334 ~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++++..+ ++--+--|++++.-|..
T Consensus 195 LrIme~g-SElSktvaifI~qkil~ 218 (315)
T COG5209 195 LRIMELG-SELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHhc
Confidence 9999998 77777777777777665
No 283
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.03 E-value=2.6 Score=42.69 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 017651 173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 252 (368)
Q Consensus 173 ~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 252 (368)
.+.++.++.-+|+++|--.... .. ..+|.|++-|..+++..++.++.-++..+|... -..+...+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~L----aK-r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRL----AK-RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHH----HH-HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 3567888999999998543322 11 268999999988888888888888888888653 12345688999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651 253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 253 L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
|.++++-|+..++-.|.+|....--. =.| ++..+..+ -+.+++++..|=.+++.+.....
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK-----w~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK-----WNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhh-----cchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998542111 112 23334444 45568899999999999876443
No 284
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=86.49 E-value=21 Score=31.12 Aligned_cols=188 Identities=17% Similarity=0.222 Sum_probs=99.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+.+..|.+.|..+|+..+ .+.+++... .++...++|.|+..=. + +.+-..++..|.+++-- -..
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~P--~~~ 76 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTWP--IEL 76 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCCC--HHH
Confidence 568888888887776654 333333322 2445556666655433 3 78889999999998872 111
Q ss_pred HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----------cccchhHHHHH
Q 017651 154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----------ERAKLSMLRNA 223 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----------~~~~~~~~~~a 223 (368)
- . +-.| .+..-+.........+ ..++..+...+++..++.++. ...+..+.+.+
T Consensus 77 ~--~--~~~~--------~~~~~~~~~~~l~~~l----~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lv 140 (266)
T PF04821_consen 77 L--V--ESQP--------KDKNQRRNIPELLKYL----QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELV 140 (266)
T ss_pred h--c--cCCC--------CChHHHHHHHHHHHHH----HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHH
Confidence 0 0 0000 0111122222222222 124445555555555555441 12255677788
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC-Ccch
Q 017651 224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSV 302 (368)
Q Consensus 224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v 302 (368)
+..+.|+..-++......... .+...+. ..+..+.+.|+...|+.+.++. ....
T Consensus 141 L~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d--------------~li~~l~~~~v~~lLL~l~s~~~~~~f 195 (266)
T PF04821_consen 141 LTLIRNLLAIPDPPSASKRSD-----------EDSSLHD--------------QLIWALFESGVLDLLLTLASSPQESDF 195 (266)
T ss_pred HHHHHHHhcCCCCcccccccc-----------hhHHHHH--------------HHHHHHHHcCHHHHHHHHHhCccccch
Confidence 888888887642222111100 1222222 3334455678888888888665 3445
Q ss_pred HHHHHHHHHHhhcCCh
Q 017651 303 LIPALRTVGNIVTGDD 318 (368)
Q Consensus 303 ~~~a~~~l~nl~~~~~ 318 (368)
....+.++..+..+.+
T Consensus 196 ~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 196 NLLLLEIIYLLFKGQD 211 (266)
T ss_pred hhHHHHHHHHHHcCCC
Confidence 5577777777776654
No 285
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=85.88 E-value=13 Score=39.13 Aligned_cols=235 Identities=17% Similarity=0.214 Sum_probs=127.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHH--------HhhcCCCCHHHHHHHHHHHHHHh
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV--------EFLMREDYPQLQFEAAWALTNIA 146 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv--------~lL~~~~~~~v~~~a~~~L~~l~ 146 (368)
.+..|+..+.+..++.|.-++..++.++...........++..++..+. ++...+--..++..++|+|..+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 4678888888999999999999999987754222222223322222221 11111111468999999999887
Q ss_pred cCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHHhccccchhHHHHHH
Q 017651 147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLNERAKLSMLRNAT 224 (368)
Q Consensus 147 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~ 224 (368)
.+..+. .+ ...+..+.+++..++.+++.-.+..+-.... ..++.+.. ..+++..+.-| .+.+..++..++
T Consensus 158 ~~~~~s--~~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 158 KHMDES--LI--KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA 229 (1549)
T ss_pred HhhhhH--hh--HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence 742211 11 1246778888888777776654444432211 11111111 01344445555 566788888888
Q ss_pred HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChHHHH----HHHHcCChHHHHHhcCCC
Q 017651 225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE--EVLTDACWALSYLSDGTNDKIQ----AVIEAGVCPRLVELLGHP 298 (368)
Q Consensus 225 ~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~--~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~L~~lL~~~ 298 (368)
.++.-.....+......+..++..+...+..-|. .-.......+..++... +..+ .-.+.|+++.+..++.+.
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHHHH
Confidence 8777666544222222333344444443322111 01111112222333322 1111 112248889999999887
Q ss_pred CcchHHHHHHHHHHhhcCCh
Q 017651 299 SPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 299 ~~~v~~~a~~~l~nl~~~~~ 318 (368)
=..++..++..+..+....+
T Consensus 309 i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 77788888888888875443
No 286
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=85.84 E-value=22 Score=30.62 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=56.5
Q ss_pred hcCcHHHHHHhhcCCCCH-------HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCC--HHHHHHHHHHHH
Q 017651 115 QSGVVPRFVEFLMREDYP-------QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS--DDVREQAVWALG 185 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~ 185 (368)
+...+|.++++++.++++ -+-.....+|..++ .|-++.|..++.+++ .-++..|+.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 345689999999876621 12222233333333 367888888888754 678999999999
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHH
Q 017651 186 NVAGDSPRCRDLVLSQGALIPLLAQ 210 (368)
Q Consensus 186 nla~~~~~~~~~i~~~~~i~~l~~~ 210 (368)
.++...+.-|+.+++ .+..++..
T Consensus 139 ~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHHcCCCCHHHHHH--HHHHHHHH
Confidence 999998888888776 45555554
No 287
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.79 E-value=64 Score=35.94 Aligned_cols=213 Identities=16% Similarity=0.083 Sum_probs=107.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDL 197 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~ 197 (368)
+..++..|..++ |..+..+..+++.++..-++ ..++ .+....+++-+.+ .++-.|..-.-++|.+-.+...+-+.
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 344455555556 77777788888877763111 1111 1234555665555 34444444445555553322111111
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc----
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD---- 273 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~---- 273 (368)
-.....+..++.+-..+..+.++..++.++..+...........++..+..+..+|-+..+ ...+.-.+++....
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence 1112246667777755557799999999999887664222233445555555565543211 11122222222111
Q ss_pred -------------CCh--HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC
Q 017651 274 -------------GTN--DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338 (368)
Q Consensus 274 -------------~~~--~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~ 338 (368)
.+. +.+.. +..-.+-...-+++++++.++..++.++.++-...+.... -.-+++.+..+|.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 111 11111 1122233344445677889999999999998655543221 1123555666665
Q ss_pred CC
Q 017651 339 HS 340 (368)
Q Consensus 339 ~~ 340 (368)
++
T Consensus 1109 s~ 1110 (2067)
T KOG1822|consen 1109 SS 1110 (2067)
T ss_pred ch
Confidence 55
No 288
>PRK14707 hypothetical protein; Provisional
Probab=85.61 E-value=70 Score=36.24 Aligned_cols=278 Identities=15% Similarity=0.071 Sum_probs=143.2
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 75 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
+|..+++.+. .++...-..|+..|...+..+ ......+-..|+-..|=-+-+.++.+.....+.++=..++. .+..+
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l~ 283 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGLR 283 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHHH
Confidence 4555555554 233333344455555444432 23333333444444444444556644555555555555654 34444
Q ss_pred HHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH-Hhh
Q 017651 154 KVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS-NFC 231 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~ 231 (368)
+.+-..+ +...++-| +=++..+...++..|..=..+++..+..+-.. .+...++-|.+-++..+-+.++.+|. .++
T Consensus 284 ~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 284 KALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred HhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 4443333 33333333 33677777766666665555666665443333 45566666666666666555555555 466
Q ss_pred cCCCCCChhhh-hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 232 RGKPQPPFDQV-RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
.+. ....... .++-..|..+-+-++..+...++..|..=..++.+..+.+-..|+-..|-.+-+=++..+...+...+
T Consensus 362 ~d~-~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 362 ADP-ELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred cCH-hhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 553 2222222 33333444444456667777777766655555555545444445555555555667777777777777
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.--...+.+.++.+--.+ +...+..++.=.+..+..+|+..|.-=.+
T Consensus 441 A~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 441 AGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 766666655554333223 33333334332255566666555544333
No 289
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.57 E-value=8.8 Score=33.83 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=76.4
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh--hhhhchH----HHHHHhhc--------CCCHHHHHHHHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRPAL----PALAQLVH--------SNDEEVLTDACWAL 268 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~----~~L~~lL~--------~~d~~v~~~a~~~l 268 (368)
++|+++.++ .+.+..++...+.+|..+....+.... ..-.|.. +.+..++. .+...+...+.-++
T Consensus 120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 689999999 777999999999999999987654441 1112322 34444444 23456777777777
Q ss_pred HHhhcC-----C---hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651 269 SYLSDG-----T---NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 269 ~~l~~~-----~---~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
..|+.. . ......++..|++..+...-+.+.+.++...+..+..++..-....-.-++ .+++.+.+.+.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~-rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ-RIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhcCC
Confidence 777431 1 122233333344433333333334677777777777666432211111111 4566666666654
No 290
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=85.47 E-value=10 Score=27.33 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=54.4
Q ss_pred HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
..+++..|+++++.+.......++..+..++..+. ....+.+.|....|.++-... ++..+...-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-AAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-HHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 44678899999999988899999999999887654 566688889999988877666 6777766655543
No 291
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=85.05 E-value=11 Score=35.41 Aligned_cols=152 Identities=12% Similarity=0.096 Sum_probs=69.1
Q ss_pred hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH
Q 017651 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 278 (368)
Q Consensus 200 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 278 (368)
+...+|++...| +.+-.++...+...++.|.+..+ ...-..+..++|.|+.-.--....-.-.....|..+....+..
T Consensus 115 E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~ 193 (435)
T PF03378_consen 115 EEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF 193 (435)
T ss_dssp HHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh
Confidence 334678888888 66566777777778777776544 2222333445554432211111111122223333332221211
Q ss_pred HHHHHHc----CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651 279 IQAVIEA----GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 279 ~~~~~~~----~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
+... +++..+-+++.+...+ ..+...|..+...-+. ..+..+. .++..++.-|+++..+..++.-+..+
T Consensus 194 ---i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~ 267 (435)
T PF03378_consen 194 ---IVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFL 267 (435)
T ss_dssp -------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred ---hcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 1211 2333344555554332 4577777777665542 2222222 34555555555443555666666666
Q ss_pred HHHhc
Q 017651 354 SNITA 358 (368)
Q Consensus 354 ~nl~~ 358 (368)
+.++.
T Consensus 268 ~~~~~ 272 (435)
T PF03378_consen 268 SLFAI 272 (435)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 292
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.94 E-value=6.3 Score=30.30 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=58.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchh-HHHHHHHHHHHhhcCC
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLS-MLRNATWTLSNFCRGK 234 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~-~~~~a~~~L~~l~~~~ 234 (368)
++..|-.-|.++++.++-.|+.+|-.+..+. +.+...+...+++..|..++....+.. ++..++..+..-....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566777777889999999999999998874 557888888889999999986555444 8888888888776654
No 293
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.72 E-value=6.7 Score=30.62 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
++..|..-|.+.++.++-.|+..|-.+..+.. .++..+...+++..|..++....+..++..++..+...+...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 56667777778899999999999999987764 477888888899999999965578999999999988877655
No 294
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=84.72 E-value=15 Score=29.39 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhcCC-----CCC---chHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh-hC
Q 017651 89 SLQLEATTQFRKLLSIE-----RSP---PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI-DH 159 (368)
Q Consensus 89 ~~~~~a~~~l~~l~s~~-----~~~---~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~ 159 (368)
..+.-++..+..++... +.+ ....+++..+.+.+++.+.+++ +.+-..+++++..+.... +..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~---~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRF---RSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 34445555555554432 122 4455677888999999998877 899999999999988632 22211 22
Q ss_pred C-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651 160 G-AVPIFVK-LLASPS--DDVREQAVWALGNVAGDSPRCRDLVLSQG 202 (368)
Q Consensus 160 g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nla~~~~~~~~~i~~~~ 202 (368)
+ .++.++. ++.+++ ...++.++.++..++.+.....+...+.+
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYD 159 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNYD 159 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHcC
Confidence 2 2344444 666543 46788899999999988766666555443
No 295
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=84.55 E-value=29 Score=30.87 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=87.7
Q ss_pred HHHhhCCChHHHHHhhCC-----------------------CCHHHHHHHHHHHHHhhCCChhhHH--------------
Q 017651 154 KVVIDHGAVPIFVKLLAS-----------------------PSDDVREQAVWALGNVAGDSPRCRD-------------- 196 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~~-----------------------~~~~v~~~a~~~L~nla~~~~~~~~-------------- 196 (368)
..+.+.|.||.|-+++.. ++..++.+-+..+.+++........
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456677888888877753 1235788999999999874321111
Q ss_pred -------HHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCCC-CCh--hhhhchHHHHHHhhcCC---CHHHHH
Q 017651 197 -------LVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQ-PPF--DQVRPALPALAQLVHSN---DEEVLT 262 (368)
Q Consensus 197 -------~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~-~~~--~~~~~~~~~L~~lL~~~---d~~v~~ 262 (368)
.-.+.|.+..++..+...+ +...+-..+.|+-.+.++.+. ... ....|+++.++.-+-++ +..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1124566777887775444 667788899999999999744 233 23378888888766544 356888
Q ss_pred HHHHHHHHhhcCChHHHHH
Q 017651 263 DACWALSYLSDGTNDKIQA 281 (368)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~ 281 (368)
...-.||.|..++......
T Consensus 163 ~~FDLLGELiK~n~~~f~~ 181 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQR 181 (303)
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 8999999999887655443
No 296
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.20 E-value=48 Score=33.60 Aligned_cols=252 Identities=15% Similarity=0.144 Sum_probs=147.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 155 (368)
...|=+.++++....+-+++..+-++.... +.+ .+++. ..-.|.+.+..++ -.+|...+++... .....+.
T Consensus 26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q----~g~hln~ 96 (970)
T KOG1988|consen 26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQ----SGKHLNK 96 (970)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhh----ccccchh
Confidence 455666777777777888888887776543 222 23222 2445667777777 6888877777762 1222333
Q ss_pred Hhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 156 VID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 156 ~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
+.. ...+..+.....+.|+.-+..++..++.++.--|+. .-...++..-..+.+.--.+.++.+..+++.-.
T Consensus 97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s 169 (970)
T KOG1988|consen 97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSHHELEVEAAEFAAACFAAQS 169 (970)
T ss_pred hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence 222 223333344445678888999999999887554443 345666655324444444567777777776542
Q ss_pred CCCChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHH
Q 017651 235 PQPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVG 311 (368)
Q Consensus 235 ~~~~~~~~~~~~~~L~~lL~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~ 311 (368)
..+. .++.-.+.+++...+ +......+-+++.+..+.... ..+....+.++ ..+..+-..+-+.+..
T Consensus 170 --k~FA--~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A------~ra~~l~m~lv~~tps~d~~v~fL~stT 239 (970)
T KOG1988|consen 170 --KDFA--CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA------SRAFGLCMSLVSGTPSIDRVVAFLYSTT 239 (970)
T ss_pred --hhhH--HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh------HHHHHHHHHHhcCCCcccceeeehhhhH
Confidence 1111 133334445554443 445666777777776542211 22344555565 3344444556677777
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+++...-..+ .+-++.+.+.++.+....+++.+.|.+.+++.
T Consensus 240 ~Lasrs~~ai-----~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 240 NLASRSLVAI-----SEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHHh-----HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 7775432221 25577788888755466788889999888874
No 297
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.70 E-value=47 Score=32.66 Aligned_cols=181 Identities=17% Similarity=0.135 Sum_probs=94.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI---DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
|--+++.+ ++++.-|+-+|.-+..+.+.+...+- ....+..++..+. .++..+-.++++|.|+..+ +..+..+
T Consensus 550 l~~l~~wp--~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~ 625 (745)
T KOG0301|consen 550 LAILLQWP--VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELF 625 (745)
T ss_pred HHHHhcCC--HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHH
Confidence 33344444 58888888888888775433332222 1234445555554 4466778899999999988 5666666
Q ss_pred HhcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 017651 199 LSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLS 272 (368)
Q Consensus 199 ~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~~l~ 272 (368)
... ...++..+. ..++..++........|++-.- ........+-+...+..++.. +|-+.....+.+|++|+
T Consensus 626 ~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 626 MSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 553 333333332 2334556655555555544221 111111111222223333322 24456677888999999
Q ss_pred cCChHHHHHHHHcCChHHHHHhcCC-CCcchHHHHHHH
Q 017651 273 DGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRT 309 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~ 309 (368)
..+....+ +.+.--+..++.-+++ .+.......++.
T Consensus 704 t~~~~~~~-~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 704 TVDASVIQ-LAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred cccHHHHH-HHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 87655533 3333335555555532 233334444443
No 298
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=83.51 E-value=7.3 Score=30.11 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---------hHHHHH----HHH
Q 017651 219 MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT---------NDKIQA----VIE 284 (368)
Q Consensus 219 ~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~----~~~ 284 (368)
++...+.+++.++... |..- ..+++.++.++.++ +.-....+.+|..+...- ..+... +.+
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 5566777777777654 3322 24666677776663 444444555555443210 111111 111
Q ss_pred --cCChHHHHHhcCCCC----cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651 285 --AGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 285 --~~~~~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l 353 (368)
..++..+.+.+.... ..+...++.+++..+..-+ ...+.+.++++.+..+|.++ .++..|+-+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134445555553322 7788999999999988544 55677788999999999544 5688888765
No 299
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=83.10 E-value=5.4 Score=31.78 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=76.5
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 282 (368)
.++.|+++|+.+.+..+++.++.+++.|---+|-..... .+..+.-. -...+......... ........++.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~-~~~~~~~~--~~~~~~~~~~~~l~-~~~~~~~~ee~---- 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSI-QKSLDSKS--SENSNDESTDISLP-MMGISPSSEEY---- 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcc-cccCCccc--cccccccchhhHHh-hccCCCchHHH----
Confidence 467778888767789999999999998876554221111 01000000 00011111111111 11111122222
Q ss_pred HHcCChHHHHHhcCCCC-cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 283 IEAGVCPRLVELLGHPS-PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 283 ~~~~~~~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
.-..++..|+..|++++ ..-...++.++.++.......+-..+. .++|.++..+.+. .+..++...+-|+.+.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~-~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTC-PDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 22335677777776654 233345666666665333222322232 6788999999877 5577777777777765
No 300
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.95 E-value=7 Score=34.10 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcC--cHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCC
Q 017651 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSG--VVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTS 150 (368)
Q Consensus 77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g--~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~ 150 (368)
..+.+.+.+=.++.++-++..+|-++. .+...... ..+ +...+..++... ..+..+.-+++++.|+..+ +
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~ 141 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAAL---HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-P 141 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCC---CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-C
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHh---CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-C
Confidence 334444433233346667777765543 23333333 221 244455554432 3478899999999999984 6
Q ss_pred cchHHHhhCC--ChHHHHHhhCCC----CHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHHHHHh-ccccchhHHHH
Q 017651 151 ENTKVVIDHG--AVPIFVKLLASP----SDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAQL-NERAKLSMLRN 222 (368)
Q Consensus 151 ~~~~~~~~~g--~i~~L~~lL~~~----~~~v~~~a~~~L~nla~~~~~~~-~~i~~~~~i~~l~~~l-~~~~~~~~~~~ 222 (368)
..+..+.... .+-..+..+... +..++..++..+.|++......+ +.-.....+..+...+ ....++++...
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 6666666542 233333333333 78899999999999973211110 0000111344555533 23468999999
Q ss_pred HHHHHHHhhcCC
Q 017651 223 ATWTLSNFCRGK 234 (368)
Q Consensus 223 a~~~L~~l~~~~ 234 (368)
++-++++|....
T Consensus 222 ~LvAlGtL~~~~ 233 (268)
T PF08324_consen 222 LLVALGTLLSSS 233 (268)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHhccC
Confidence 999999999553
No 301
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.81 E-value=94 Score=34.77 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=111.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP 238 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 238 (368)
-.+..++..|..+++..+..+..+++.+++..+.. .+ -.+..+.+++.+....|+-.+.--.-++..+-++. ....
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 34555666666788888888888888888654321 11 11245667777756666666666666666666665 3334
Q ss_pred hhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-CC--cchHH----------
Q 017651 239 FDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS--PSVLI---------- 304 (368)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~--~~v~~---------- 304 (368)
.......+..+..+-+++ +|.|+..++.++..+++.........++. .+..+..+|-+ +. .++..
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 444456677777777655 56999999999999987654443333332 23344444422 21 11111
Q ss_pred ---HHHHHHHHhhcCChH--HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651 305 ---PALRTVGNIVTGDDF--QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 305 ---~a~~~l~nl~~~~~~--~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
....++|.=..++.. .+. .+..-.+-...-++.++ ++.++.+|..++-++---.|-+
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~ 1093 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRH 1093 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchh
Confidence 222222222222221 111 11112233344445566 8888999999988876543333
No 302
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=81.73 E-value=33 Score=29.53 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=78.6
Q ss_pred cHHHHHHhhcCCC----------CHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017651 118 VVPRFVEFLMRED----------YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187 (368)
Q Consensus 118 ~i~~Lv~lL~~~~----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 187 (368)
++|.|+.+|.... .......|+..|+.+-. .-+++.++++++.++..+-. .+|-.
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~----l~GD~ 96 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLED----LFGDF 96 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHH----HHcch
Confidence 4666666665411 02334455555554432 35799999999876542111 11111
Q ss_pred h-CCChhhHHHHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHH
Q 017651 188 A-GDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC 265 (368)
Q Consensus 188 a-~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~ 265 (368)
. .+-+.. -..+-.|-++.|.+++.+.. +.-++..++.++..+....+......+.-+...+...+..++..+...-.
T Consensus 97 ~tE~l~~i-lasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv 175 (249)
T PF06685_consen 97 ITEDLPRI-LASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLV 175 (249)
T ss_pred hHhHHHHH-HHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 1 111111 01122345777777775444 66677788999999998765555544433333344445444444333333
Q ss_pred HHHHHhhcC-ChHHHHHHHHcCChHH
Q 017651 266 WALSYLSDG-TNDKIQAVIEAGVCPR 290 (368)
Q Consensus 266 ~~l~~l~~~-~~~~~~~~~~~~~~~~ 290 (368)
..+..|... -...++.+.+.|.++.
T Consensus 176 ~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 176 ADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 333333211 1233445555566544
No 303
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.69 E-value=13 Score=30.25 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=52.5
Q ss_pred CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 017651 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194 (368)
Q Consensus 117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~ 194 (368)
-.+|.+++-|...+ ...+..|...+..+... ..+..-.++ .-.|..+-..|.+.++++...++.+|..|+..++..
T Consensus 38 ~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 38 HYLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hHHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45788888887776 46677777777776654 222222222 246677778888999999999999999996555443
No 304
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.36 E-value=32 Score=31.20 Aligned_cols=218 Identities=16% Similarity=0.116 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHh
Q 017651 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQL 211 (368)
Q Consensus 134 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l 211 (368)
-|...+.+|..+.. .+ +...++..|..++.. .++......+.+++.=+..- .+. ....+..+.+=+
T Consensus 3 ~r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl 70 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGL 70 (339)
T ss_pred HHHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHh
Confidence 34455556666555 22 223455666666653 55665666666655433111 111 111334444444
Q ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc----CCCHHHH---HHHHHHHHHhhcCChHHHHH--
Q 017651 212 NERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH----SNDEEVL---TDACWALSYLSDGTNDKIQA-- 281 (368)
Q Consensus 212 ~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~----~~d~~v~---~~a~~~l~~l~~~~~~~~~~-- 281 (368)
.+..+.+++.-+.++...+... ..........++|.|.+.+. ++-+... ..++.++..+.....+..+.
T Consensus 71 -~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 149 (339)
T PF12074_consen 71 -KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKN 149 (339)
T ss_pred -cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhh
Confidence 4445557777777777766522 22233444667888877773 2222211 11111111122211111111
Q ss_pred HH----HcCChHHHH---HhcCC-CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHHHH
Q 017651 282 VI----EAGVCPRLV---ELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT 352 (368)
Q Consensus 282 ~~----~~~~~~~L~---~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~ 352 (368)
.. ..+-=+.++ ++.+. .+++.....++++..+..+.+.....-....+-..++.++-++. .+.+|+.|.-+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 00 000000000 11112 34455666777777776554422211112234555666666653 68899999999
Q ss_pred HHHHhcCCHHHh
Q 017651 353 ISNITAGNRDQI 364 (368)
Q Consensus 353 l~nl~~~~~~~i 364 (368)
+..+.+.+++.+
T Consensus 230 l~~l~~~~~~~l 241 (339)
T PF12074_consen 230 LKKLYASNPELL 241 (339)
T ss_pred HHHHHHhChHHH
Confidence 999998877744
No 305
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=81.30 E-value=16 Score=26.37 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=50.7
Q ss_pred hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 017651 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL 184 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L 184 (368)
..+++..|++.++.+. +..+.+++..|..++. ++.....+.+-|+...|.++-...++..+..+-.++
T Consensus 28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4456777888888777 5688999999999888 477778888889999877777666666665544443
No 306
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.37 E-value=52 Score=31.60 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=86.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhcC
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~~ 148 (368)
+.++.+.+.++++..+.+|+..|+. ++-... ++|.|+.++... ++-.+-...+..+..+..
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~- 276 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD- 276 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-
Confidence 5677777778888888888888761 233333 378888888753 224455556666666665
Q ss_pred CCcchHHHhhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cch
Q 017651 149 TSENTKVVIDHGAVPIFVKLLAS----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKL 217 (368)
Q Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~ 217 (368)
|+...-.-.=.-.+|.++.++-+ ....+|..|+..+..++.+-....+. +...++..+.+.+... .+.
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence 44433222222466777765532 34679999999999988765443233 3334566666666333 244
Q ss_pred hHHHHHHHHHHHhhc
Q 017651 218 SMLRNATWTLSNFCR 232 (368)
Q Consensus 218 ~~~~~a~~~L~~l~~ 232 (368)
....-++..|..|..
T Consensus 356 st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 356 STHYGAIAGLSELGH 370 (576)
T ss_pred hhhhhHHHHHHHhhh
Confidence 555555555555543
No 307
>PRK14707 hypothetical protein; Provisional
Probab=80.14 E-value=1.1e+02 Score=34.73 Aligned_cols=236 Identities=13% Similarity=0.053 Sum_probs=121.8
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651 75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 153 (368)
Q Consensus 75 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 153 (368)
.+...++.+. .++...-..|+..|..-+..+ ....+.+-..|+-..|--+-+.++ ..+-..++..|..-..++.+.+
T Consensus 374 ~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d-~~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l~ 451 (2710)
T PRK14707 374 GVSSVLNALSKWPDTPVCAAAASALAEHVVDD-LELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTELC 451 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhccC-hhhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHHH
Confidence 3445555554 456556666666666555532 334444555565555555556788 5677777777777666566666
Q ss_pred HHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccc-hhHHHHHHHHHHHhh
Q 017651 154 KVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK-LSMLRNATWTLSNFC 231 (368)
Q Consensus 154 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~-~~~~~~a~~~L~~l~ 231 (368)
+.+--.+ |...++-|+ =++..+-.+++..|..=..+.+..++.+--.++... ++-|.+.++ ......+.|.-..+.
T Consensus 452 ~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~-L~aLSK~Pd~~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 452 KALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIA-LHSLSKWPDTPICAEAASALAERVV 529 (2710)
T ss_pred hhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHH-HHHhhcCCCcHHHHHHHHHHHHHhc
Confidence 5554444 333444443 366666666666665444444455555444433333 333435554 444555666666666
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcc-hHHHHHHH
Q 017651 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPS-VLIPALRT 309 (368)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~-v~~~a~~~ 309 (368)
.............+...+..+-+.++......+...|..+....+.. ..-++..-+..++.-| +-++.. .+..+.++
T Consensus 530 ~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~L 608 (2710)
T PRK14707 530 DELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVNAL 608 (2710)
T ss_pred cchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHHHH
Confidence 44322222112223333333444556666666666666655443333 2333344455555555 445443 34444444
Q ss_pred HHHhhc
Q 017651 310 VGNIVT 315 (368)
Q Consensus 310 l~nl~~ 315 (368)
.+.+..
T Consensus 609 A~~l~~ 614 (2710)
T PRK14707 609 AERLVD 614 (2710)
T ss_pred HHHhcc
Confidence 444444
No 308
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=80.06 E-value=18 Score=28.04 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=57.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchh---HHHHHHHHHHHhhcCC
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLS---MLRNATWTLSNFCRGK 234 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~---~~~~a~~~L~~l~~~~ 234 (368)
++..|-.-|.+.++.++..|+.+|-.+..+. +.++..+....++..|..++....... ++..+...+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999998876 568888888888999999886544433 8888887777766554
No 309
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=80.03 E-value=45 Score=30.00 Aligned_cols=179 Identities=10% Similarity=0.043 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 017651 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLAS--------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 203 (368)
Q Consensus 133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~--------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~ 203 (368)
.++.+.+..+.......+ ..+. +....+|+|+. .|.+ .++++......++..+-..-...-..+.+. +
T Consensus 42 ~iKkeIL~Li~t~i~~~~-~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE-DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S--HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccC-CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 577888888888777433 3333 33456777776 4432 345555544444444443222222344443 6
Q ss_pred hHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCC----CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---
Q 017651 204 LIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQ----PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--- 274 (368)
Q Consensus 204 i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~--- 274 (368)
+.+.+.++.++. -++.+......|..++...+. -+......++..++-.++|.+.++...++.++..+...
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 777888885443 467777777777777765321 11223345667777778999999999999999888743
Q ss_pred -ChHHHHHHHHcCCh---HHHHHhcCCC-CcchHHHHHHHHHHhh
Q 017651 275 -TNDKIQAVIEAGVC---PRLVELLGHP-SPSVLIPALRTVGNIV 314 (368)
Q Consensus 275 -~~~~~~~~~~~~~~---~~L~~lL~~~-~~~v~~~a~~~l~nl~ 314 (368)
+++....+.+.-.+ ..+...+.++ ....-..-+.+|.++.
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 34555566665433 3344444332 2222333334445444
No 310
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=79.86 E-value=41 Score=34.22 Aligned_cols=143 Identities=19% Similarity=0.191 Sum_probs=83.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651 77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
..+...+.+++...-...+.++..+...+.-++.. ...-++.-..-.+..- ..+......+|..++...++....+
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34555556666666666666666665543211111 1111111111122111 3566778889999998777666665
Q ss_pred hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 157 ID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 157 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.. .++...++.++-+++.++.+.|...|....+.. .|. +.+-.++ +..-......+.+.+..+...+
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~--------e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRL--------EAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHH--------HHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 54 688999999999999999999999999998532 222 2222233 2222344455566666665543
No 311
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.30 E-value=3.9 Score=31.73 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=54.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHH---HHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ---LQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~---v~~~a~~~L~~l~~ 147 (368)
+.+..|.+.|+++++..+..|+..+..++..........+....++..|..++.+..... |+..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 457788888889999999999988888876542233345556778889999887654333 88888888777665
No 312
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.27 E-value=57 Score=34.22 Aligned_cols=254 Identities=15% Similarity=0.138 Sum_probs=139.4
Q ss_pred HHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC---
Q 017651 95 TTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--- 171 (368)
Q Consensus 95 ~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--- 171 (368)
..+|..++... .++...+.+.+++..++.++-+ .+-|.-.++++.-+....+.+.. ..-+-.+++.|++
T Consensus 663 wDcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 663 WDCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcce
Confidence 34555555543 6667777788888888888743 34566566666665554444221 1123345555554
Q ss_pred -----CC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc-------c--cchhHHHHHHHHHH-----
Q 017651 172 -----PS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-------R--AKLSMLRNATWTLS----- 228 (368)
Q Consensus 172 -----~~----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~-------~--~~~~~~~~a~~~L~----- 228 (368)
++ ..+....+.+++.+.+-+...+..+-+.+++..|+..|-. + .|.-+.......|.
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 11 2445566777888877666678888899998888877621 1 12222122222211
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhh--------------------------cCCCHHHHHHHHHHHHHhhc---------
Q 017651 229 NFCRGKPQPPFDQVRPALPALAQLV--------------------------HSNDEEVLTDACWALSYLSD--------- 273 (368)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~L~~lL--------------------------~~~d~~v~~~a~~~l~~l~~--------- 273 (368)
.+|.+..+.......-.-+.+..+| -+++-.--..||..+-.+-+
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs 894 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS 894 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC
Confidence 1233321111100000011111111 11211112233333333321
Q ss_pred C-ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC---CCCCccHHHHH
Q 017651 274 G-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT---HSHKKSIKKEA 349 (368)
Q Consensus 274 ~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~---~~~~~~v~~~a 349 (368)
+ .....+.+..+|++..+++.+-...+..+..-++.+..++..++.+.......|.++.++.++. ++ +...-..+
T Consensus 895 Gqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg-sspfLsha 973 (2799)
T KOG1788|consen 895 GQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG-SSPFLSHA 973 (2799)
T ss_pred CCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC-CchHhhcc
Confidence 1 1123466788999999999887778889999999999999999888777777788888777664 22 33344444
Q ss_pred HHHHHHHh
Q 017651 350 CWTISNIT 357 (368)
Q Consensus 350 ~~~l~nl~ 357 (368)
..++.-++
T Consensus 974 lkIvemLg 981 (2799)
T KOG1788|consen 974 LKIVEMLG 981 (2799)
T ss_pred HHHHHHHh
Confidence 44444443
No 313
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.66 E-value=16 Score=35.18 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--c--------ccchhHHHHHHHHHHHhhcCCCCCChh
Q 017651 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--E--------RAKLSMLRNATWTLSNFCRGKPQPPFD 240 (368)
Q Consensus 171 ~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 240 (368)
+++.+|...|-..|-.+..+-+ +...+..|..+.. . .-+..++..++..|+ +... ...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~~--Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSVI--AAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhHH--HHh
Confidence 4667788888888877765511 2224666666653 1 124455555555444 3310 001
Q ss_pred hhhchHHHHHHhhcCC--CHHHHHHHHHHH---HHhhcCC-hHH---HHHHHHcCChHHHHH----hcCCCCcchHHHHH
Q 017651 241 QVRPALPALAQLVHSN--DEEVLTDACWAL---SYLSDGT-NDK---IQAVIEAGVCPRLVE----LLGHPSPSVLIPAL 307 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~--d~~v~~~a~~~l---~~l~~~~-~~~---~~~~~~~~~~~~L~~----lL~~~~~~v~~~a~ 307 (368)
....++..+...|.++ +..++..++..+ .....+. +.. ...++..++.+.+-. -..+.+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1124555556666666 567777776666 4444332 222 223344455554410 11234567899999
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
.+||.|+...+... .-+.+++..|.+-|..+ .++++-..--+|+.++.
T Consensus 396 e~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCcccc--cccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence 99999999877432 12346788899988777 88999888888888775
No 314
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=78.45 E-value=56 Score=30.16 Aligned_cols=178 Identities=14% Similarity=0.109 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhcCCC--cchHHHhhCCChHHHHHhhC----C-------CCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651 132 PQLQFEAAWALTNIASGTS--ENTKVVIDHGAVPIFVKLLA----S-------PSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~----~-------~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
.+-|.+|...|.+.-.... .....+.+ -++.+++.+. + .+.++..+|+.+|+.+..+.. .-..+
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~-i~~~l 83 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPE-IVSTL 83 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHH-HHhhC
Confidence 3556666666666543221 22222222 2444444432 2 367899999999999986642 22222
Q ss_pred HhcC---ChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 017651 199 LSQG---ALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 199 ~~~~---~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~ 273 (368)
-..- ++...+..+.. ..+..+....+|+|+.=--............++..+..+-. -+...+..+.+.++.++..
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH
Confidence 1111 34555556633 33667777888887752211111111122223333333322 3457788999999999997
Q ss_pred CChHHHHHHHHc-CChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651 274 GTNDKIQAVIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
..+... .... -+++.++..+-+....++..|..+...+.
T Consensus 164 q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 164 QFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 765442 2223 37888888887777777777665555443
No 315
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=78.44 E-value=64 Score=30.81 Aligned_cols=272 Identities=16% Similarity=0.142 Sum_probs=131.8
Q ss_pred HHHHHHhhc-CCCHH-HHHHHHHHHHHhhcCCCCCchH---HHH--------hcCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 017651 76 LPAMVAGVW-SDDSS-LQLEATTQFRKLLSIERSPPIE---EVI--------QSGVVPRFVEFLMREDYPQLQFEAAWAL 142 (368)
Q Consensus 76 i~~l~~~l~-~~~~~-~~~~a~~~l~~l~s~~~~~~~~---~~i--------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L 142 (368)
+|..++.+- .+.|. .++.|+..+..++..+ ...++ +.+ -..+|..+.++++.+....+|..|+|.|
T Consensus 44 l~~w~ki~laeg~ptm~~laa~~GlvaLvgse-~~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~iglQsn~~wlL 122 (589)
T PF11229_consen 44 LPAWIKIVLAEGCPTMQRLAALNGLVALVGSE-GDLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVIGLQSNAAWLL 122 (589)
T ss_pred HHHHHHHHHhcCCcHHHHHHHhhchhheeccc-cceeeehhhcccCHHHHHHHHHHHHHHHHHHcCccccccccchHHHH
Confidence 566666554 44444 4556667777776554 22221 111 1346778888888766588999999999
Q ss_pred HHHhcCC---Cc-------chHHHhhCCChHHHHHhhCC----C----CHHHHHHHHHHHHHhhCCC--hhhHHHHHhcC
Q 017651 143 TNIASGT---SE-------NTKVVIDHGAVPIFVKLLAS----P----SDDVREQAVWALGNVAGDS--PRCRDLVLSQG 202 (368)
Q Consensus 143 ~~l~~~~---~~-------~~~~~~~~g~i~~L~~lL~~----~----~~~v~~~a~~~L~nla~~~--~~~~~~i~~~~ 202 (368)
+.+--.+ .. ....+-+...|...+.++-. . .+.....++..+....... |.. --.-
T Consensus 123 GhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPV----NWaa 198 (589)
T PF11229_consen 123 GHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPV----NWAA 198 (589)
T ss_pred HHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCc----cHHH
Confidence 9864321 11 11233444555666665532 1 2444555555554432211 111 0111
Q ss_pred ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHH
Q 017651 203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQA 281 (368)
Q Consensus 203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~ 281 (368)
.+.+|+++ +..++++..++.....=+..........-.-+.|.++.-| +...+.+.+..+.-...+ ++++++.
T Consensus 199 lLsPLMRl---nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sL---s~~tk~~L~~Sl~~wmkhVsedqiQ~ 272 (589)
T PF11229_consen 199 LLSPLMRL---NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSL---SVNTKKYLFESLSLWMKHVSEDQIQA 272 (589)
T ss_pred HhhHHHhc---cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhh---hHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 34555554 3356676666544333232211111111122334444443 334455555555544433 5666666
Q ss_pred HHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhhCCC---CCccHHHHHHHHHHHH
Q 017651 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYLLGLLTHS---HKKSIKKEACWTISNI 356 (368)
Q Consensus 282 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~--~g~l~~l~~ll~~~---~~~~v~~~a~~~l~nl 356 (368)
+++.=.+..+-......++++...++.-+..-....+ -.+..+. ......++++|-++ ++-++-...+.+|+.+
T Consensus 273 Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~-P~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLSEM 351 (589)
T PF11229_consen 273 FVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPS-PAQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLSEM 351 (589)
T ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhhc
Confidence 6664333333333233456777777777766433222 1222222 24455555555222 1233344455666666
Q ss_pred hcC
Q 017651 357 TAG 359 (368)
Q Consensus 357 ~~~ 359 (368)
+..
T Consensus 352 td~ 354 (589)
T PF11229_consen 352 TDT 354 (589)
T ss_pred CHH
Confidence 553
No 316
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=78.11 E-value=28 Score=31.68 Aligned_cols=101 Identities=14% Similarity=0.238 Sum_probs=59.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHHhcCC
Q 017651 76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNIASGT 149 (368)
Q Consensus 76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~~l~~~~ 149 (368)
+..+.+.+.+++...+..|+..|+. ++.... ++|.|+.++...- +-......+..+..+.. |
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~t------D~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N 247 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRT------DPGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-N 247 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc------CCCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-C
Confidence 4455555555666666666655541 222322 4888888887531 13445555566666666 4
Q ss_pred Ccch-HHHhhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhC
Q 017651 150 SENT-KVVIDHGAVPIFVKLLAS----------PSDDVREQAVWALGNVAG 189 (368)
Q Consensus 150 ~~~~-~~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nla~ 189 (368)
+... ...+. -.+|.++.++-+ ++..+|+.|+.+|+.|+.
T Consensus 248 ~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 248 PNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4332 22332 367877776632 346889999999998884
No 317
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=77.82 E-value=53 Score=29.56 Aligned_cols=181 Identities=10% Similarity=0.054 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc--------ccchhHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 017651 175 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL 246 (368)
Q Consensus 175 ~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 246 (368)
.++...+..+.......+.. +. +....+++++..+-. ..++++.......+..+-..-..........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 56677777777776655433 22 333478888874321 125566665566666555533333333446666
Q ss_pred HHHHHhhcCC---CHHHHHHHHHHHHHhhcCChHHHHHHHH---cCChHHHHHhcCCCCcchHHHHHHHHHHhhcC----
Q 017651 247 PALAQLVHSN---DEEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELLGHPSPSVLIPALRTVGNIVTG---- 316 (368)
Q Consensus 247 ~~L~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~---- 316 (368)
...+.++..+ -|+.+..-...|..+........-.+-. ..++..++--++|++.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777654 3788888777777776542221111100 02355566667999999999999999988653
Q ss_pred ChHHHHHHHHcC---ChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 317 DDFQTQCIITYG---ALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 317 ~~~~~~~~~~~g---~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
+++....+.... ++..++.++.++.....-+.-+.+|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 333444454443 34444444444434445555556666655
No 318
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=77.67 E-value=4.9 Score=28.18 Aligned_cols=67 Identities=9% Similarity=0.179 Sum_probs=46.0
Q ss_pred HhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----cCCCHHHHHHHHHHHH
Q 017651 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV----HSNDEEVLTDACWALS 269 (368)
Q Consensus 199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL----~~~d~~v~~~a~~~l~ 269 (368)
.+..++.|+..++....+.+++...+.|+..+..... ..+..+.+.+...+ .++++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3445788999998777899999999999999997642 22234455544444 4556777777666553
No 319
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.62 E-value=86 Score=31.85 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=79.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHH-------HHHhhcCCCCHHHHHHHHHHHHHH
Q 017651 73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR-------FVEFLMREDYPQLQFEAAWALTNI 145 (368)
Q Consensus 73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~-------Lv~lL~~~~~~~v~~~a~~~L~~l 145 (368)
+..+|.++..|+++...+--.|+.++.+++....+.+...+-...+.|. |+.-++.++. .--.....++..+
T Consensus 497 m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~-~EneylmKaImRi 575 (960)
T KOG1992|consen 497 MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK-AENEYLMKAIMRI 575 (960)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc-cccHHHHHHHHHH
Confidence 5678999999999999899999999999988653322222212222222 2222233321 1112233333333
Q ss_pred hcCCCcchHHHhhCCChHHHHHhh----CCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccc
Q 017651 146 ASGTSENTKVVIDHGAVPIFVKLL----ASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK 216 (368)
Q Consensus 146 ~~~~~~~~~~~~~~g~i~~L~~lL----~~~~-----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~ 216 (368)
..-.++...... .-.+..|.+++ ++++ ..+.+..+-++...+..++..-..+.. ..+|.+-..| ..+-
T Consensus 576 i~i~~~~i~p~~-~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~-aL~p~fq~Il-~eDI 652 (960)
T KOG1992|consen 576 ISILQSAIIPHA-PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE-ALFPVFQTIL-SEDI 652 (960)
T ss_pred HHhCHHhhhhhh-hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH-HHHHHHHHHH-HHHH
Confidence 321111110000 01233333333 2322 344555555555555555544333333 2455555556 5555
Q ss_pred hhHHHHHHHHHHHhhcCC
Q 017651 217 LSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 217 ~~~~~~a~~~L~~l~~~~ 234 (368)
.++.-.+...++-+....
T Consensus 653 ~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666677777777766654
No 320
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=77.37 E-value=36 Score=30.98 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=63.7
Q ss_pred ChHHHHHHhccc-----c-chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------CCCHHHHHHHHH
Q 017651 203 ALIPLLAQLNER-----A-KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACW 266 (368)
Q Consensus 203 ~i~~l~~~l~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~----------~~d~~v~~~a~~ 266 (368)
.+|.++..+... . +.......+.++..|..++.-.....+..++|.++.++- .+.+.++..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466666665321 2 567778888888888887544444455778888877662 123688999999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC-c-chHHHHHHHHHHh
Q 017651 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-P-SVLIPALRTVGNI 313 (368)
Q Consensus 267 ~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~-~v~~~a~~~l~nl 313 (368)
+++.++..-...... +...+...+.+.|.++. + ...--|+..|+.+
T Consensus 291 ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999998542221111 22234445555554332 2 2244444444443
No 321
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.24 E-value=87 Score=31.71 Aligned_cols=225 Identities=14% Similarity=0.076 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHH
Q 017651 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPL 207 (368)
Q Consensus 132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l 207 (368)
+-++...+.+|.|+...-..... ... ..+-+++.+-.+ ++..+.+-+....+-...+.+..-..+.. .+|.+
T Consensus 629 ~lLr~alL~~L~~lV~alg~qS~-~~~-~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~--L~p~l 704 (978)
T KOG1993|consen 629 PLLRCALLATLRNLVNALGAQSF-EFY-PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLL--LFPHL 704 (978)
T ss_pred cHHHHHHHHHHHHHHHHhccCCc-cch-HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHH--HHHHH
Confidence 56777777788887652111110 010 112222333222 22344455554444444555555445444 57777
Q ss_pred HHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651 208 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (368)
Q Consensus 208 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 285 (368)
+..+..+. +....+...+....--+ +..+. ...+++..+.+++..-..+-....+.++..+...++ ........
T Consensus 705 ~~~iE~st--e~L~t~l~Ii~sYilLd-~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~~~ 780 (978)
T KOG1993|consen 705 LYIIEQST--ENLPTVLMIISSYILLD-NTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLLFS 780 (978)
T ss_pred HHHHHhhh--hhHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhhcc
Confidence 77774332 33344444444332221 11122 225677788888865555666666777766665543 44555666
Q ss_pred CChHHHHHhc--CCCCcchHHHHHHHHHHhhcCChHHHHHHHHc---------CChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651 286 GVCPRLVELL--GHPSPSVLIPALRTVGNIVTGDDFQTQCIITY---------GALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 286 ~~~~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---------g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
++++.+..-. +.+.|.+...-+.+++.+.--++...-.+... .++..-+.+..+-.+++-||--+.+++
T Consensus 781 ~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~Lals 860 (978)
T KOG1993|consen 781 PLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALS 860 (978)
T ss_pred hhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHH
Confidence 7888776554 55668888888999999887776554444432 233444445555557888999999999
Q ss_pred HHhcCCHHHh
Q 017651 355 NITAGNRDQI 364 (368)
Q Consensus 355 nl~~~~~~~i 364 (368)
-+...+-..|
T Consensus 861 Sll~t~~~~i 870 (978)
T KOG1993|consen 861 SLLRTNNPDI 870 (978)
T ss_pred HHhccCCcHH
Confidence 9887533333
No 322
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.03 E-value=30 Score=36.11 Aligned_cols=271 Identities=17% Similarity=0.133 Sum_probs=146.2
Q ss_pred hccHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-C-
Q 017651 73 LESLPAMVA-GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-T- 149 (368)
Q Consensus 73 ~~~i~~l~~-~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~- 149 (368)
++++.-|-. .|++.+.+.+-..+..+.++.+.. .++....-+.--+|.|+.-+..-. ..+|...+.+|..-... +
T Consensus 465 LeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvnc 542 (2799)
T KOG1788|consen 465 LEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNC 542 (2799)
T ss_pred hHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhcc
Confidence 333433333 345778888889999999987643 333333335566888887776654 46777777666543321 0
Q ss_pred CcchHHHhhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651 150 SENTKVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 228 (368)
..+++ +-.|+-+|+.+- ..+....+.....+...+..+++.+.+-|.++.|-..++++.-..--..-.....
T Consensus 543 vPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvse 615 (2799)
T KOG1788|consen 543 VPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSE 615 (2799)
T ss_pred CcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHH
Confidence 11111 234666777643 4555566666667766667788999999999988877754320000000011111
Q ss_pred HhhcCCCCCChhhh---hchHHHHHHhhcC---CCH--HHH---HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC
Q 017651 229 NFCRGKPQPPFDQV---RPALPALAQLVHS---NDE--EVL---TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297 (368)
Q Consensus 229 ~l~~~~~~~~~~~~---~~~~~~L~~lL~~---~d~--~v~---~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 297 (368)
..-++...+.+... ...+-.--.+..+ .++ ++. .-.-.+|..+...+.+....+.++.++..+++++-
T Consensus 616 hydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli- 694 (2799)
T KOG1788|consen 616 HYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI- 694 (2799)
T ss_pred HhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee-
Confidence 11111112111110 0000000011122 111 111 11234666777777788788888888988888883
Q ss_pred CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-----------CccHHHHHHHHHHHHhc
Q 017651 298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-----------KKSIKKEACWTISNITA 358 (368)
Q Consensus 298 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-----------~~~v~~~a~~~l~nl~~ 358 (368)
+.+.|...++++..+....+.+.. +.-+-.+++.|+++- .....+....++..+..
T Consensus 695 -ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivg 761 (2799)
T KOG1788|consen 695 -NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVG 761 (2799)
T ss_pred -chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHc
Confidence 456688899999988876664322 111333445554420 12445556666666654
No 323
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=76.46 E-value=70 Score=30.89 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=87.1
Q ss_pred cCcHHHHHHhhc--C--------CCCHHHHHHHHHHHHHHhc--CCCcchHHHhhCCChHHHHHhhCCC--CHHHHHHHH
Q 017651 116 SGVVPRFVEFLM--R--------EDYPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAV 181 (368)
Q Consensus 116 ~g~i~~Lv~lL~--~--------~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~ 181 (368)
..+|..|+.+.. . +-.+.+|...+..|..-.. .... ..+..+..-|.++ +..++..++
T Consensus 271 ~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~--------~~~~i~~~~l~~~~~~~klk~~~l 342 (501)
T PF13001_consen 271 PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFP--------NILQIVFDGLYSDNTNSKLKSLAL 342 (501)
T ss_pred HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCc--------cHHHHHhccccCCccccccchhcc
Confidence 446777777776 2 2236788777777665321 1111 2334444445555 567777776
Q ss_pred HHH---HHhhCCChh-----hHHHHHhcCChHHHHHHh----ccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHH
Q 017651 182 WAL---GNVAGDSPR-----CRDLVLSQGALIPLLAQL----NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL 249 (368)
Q Consensus 182 ~~L---~nla~~~~~-----~~~~i~~~~~i~~l~~~l----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L 249 (368)
..+ .....+.+. .+.. +..++.+.+ ..- ....+...+..+-.+|+.|+...|.... ....++..|
T Consensus 343 ~F~~~~~~~~~~~~~~~l~~l~~~-i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~-~d~~li~~L 419 (501)
T PF13001_consen 343 QFIRGSSWIFKHISPQILKLLRPV-ILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS-KDLSLIEFL 419 (501)
T ss_pred hhhhcchHHhhhcCHHHHHHHHHH-HHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCccccc-ccHHHHHHH
Confidence 666 444433322 1112 222333333 100 0234678888999999999988654321 224567777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 250 AQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 250 ~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
.+-|..++++++..+-.+|+.++..
T Consensus 420 F~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 420 FDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHhhCcchHHHHHHHHHHHHHHHH
Confidence 7777888899999999999888743
No 324
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.44 E-value=27 Score=27.09 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=67.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH-HHHHHcCChH
Q 017651 253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALP 331 (368)
Q Consensus 253 L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~ 331 (368)
+..+|.....+.|..+.. .. ... ..++..+.+-|.++++.++..|+..+-.++..+.... ..+...+++.
T Consensus 14 l~~~dw~~ileicD~In~-~~--~~~------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQINK-EP--EGP------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHHHHc-CC--ccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 345677777777777742 11 111 1246778888999999999999999999998775433 4566678999
Q ss_pred HHHHhhCCC-----CCccHHHHHHHHHHHHh
Q 017651 332 YLLGLLTHS-----HKKSIKKEACWTISNIT 357 (368)
Q Consensus 332 ~l~~ll~~~-----~~~~v~~~a~~~l~nl~ 357 (368)
-|+.++... .+..|+..+.-.+..-+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 999999641 26788888877776554
No 325
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.78 E-value=4.9 Score=35.98 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCcchHHHhhCCChHHHHH--hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 017651 138 AAWALTNIASGTSENTKVVIDHGAVPIFVK--LLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (368)
Q Consensus 138 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~--lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~ 200 (368)
..+.+++++...++.++.+-+.|+++.++. -+.+.++-+++-.+.|+.++..++.+.++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 567899999999999999999999998877 345678999999999999999999888776654
No 326
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.59 E-value=39 Score=36.59 Aligned_cols=206 Identities=15% Similarity=0.139 Sum_probs=118.6
Q ss_pred CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc---ccchhHHHHH---
Q 017651 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNA--- 223 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~---~~~~~~~~~a--- 223 (368)
.+.+..+++.|....++.-+++.++.++..+.|++.-.-.+-....+.....-.+..++.+... ++++.+....
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF 1508 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALF 1508 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHH
Confidence 3444477888999999999999999999999888766544332211222222234444444422 2233332221
Q ss_pred HHHHHHhhcCCCCCChhh-----------hhchHHHHHHhhcCCCHHHHHHHHHHHH---HhhcCChHHHHHHHHcCChH
Q 017651 224 TWTLSNFCRGKPQPPFDQ-----------VRPALPALAQLVHSNDEEVLTDACWALS---YLSDGTNDKIQAVIEAGVCP 289 (368)
Q Consensus 224 ~~~L~~l~~~~~~~~~~~-----------~~~~~~~L~~lL~~~d~~v~~~a~~~l~---~l~~~~~~~~~~~~~~~~~~ 289 (368)
..-..+++..+....... .-..+|.+-+++.+..++-...--|.+. ......+ ..+.....+...
T Consensus 1509 ~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~-D~ql~~~~~~~~ 1587 (1758)
T KOG1791|consen 1509 IAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCP-DYQLLQIRNIFE 1587 (1758)
T ss_pred HHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCch-hhhHHhhcCcce
Confidence 122234444431111110 1235566777776665544444444443 3333333 346667778888
Q ss_pred HHHHhcCCC--CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHH-HHHHHHHH
Q 017651 290 RLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKE-ACWTISNI 356 (368)
Q Consensus 290 ~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~-a~~~l~nl 356 (368)
.++.+.+++ +...+...+.++++-+.-.......+-..|+..++..++.++. ++..+++ ..-++.++
T Consensus 1588 ~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1588 TLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred EeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 888888775 3444557777788777766666666667799999999999875 4445555 34444443
No 327
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=75.02 E-value=24 Score=27.14 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310 (368)
Q Consensus 258 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l 310 (368)
.++...++.++......-+ ...+.+.++++.+.++|.+ +..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 6778888888888776422 3456667788888888843 45577777764
No 328
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=74.39 E-value=67 Score=36.16 Aligned_cols=181 Identities=11% Similarity=0.080 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 017651 171 SPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP 247 (368)
Q Consensus 171 ~~~~~v~~~a~~~L~nla~~~~---~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 247 (368)
+++..+...|+..|..++..-- +.-..-.+..++.++..++....+.+++..++.|+.++...... .+..+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence 4566777777777777764221 11111223447888888887777889999999999998876421 2233444
Q ss_pred HHHHhh----cCCCHHHHHHHHHHHHHhhcCChHHH-----HHHHHcCChHHHHHhcCCC-CcchHHHHHHHHHHhhc--
Q 017651 248 ALAQLV----HSNDEEVLTDACWALSYLSDGTNDKI-----QAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVT-- 315 (368)
Q Consensus 248 ~L~~lL----~~~d~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~-- 315 (368)
.+..+| ...++.+...|..++..++...-..+ ..+. .++..+..+-+.. +.++-..|+..+.+++.
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 444444 34567788888888877664311100 1111 2344555554433 35565666666664411
Q ss_pred --CCh-----------------------HHH-----HHHHHcCChHHH---HHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 316 --GDD-----------------------FQT-----QCIITYGALPYL---LGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 316 --~~~-----------------------~~~-----~~~~~~g~l~~l---~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+.- ... ........+|.| ..+..+. +++||..|.-+|..+..
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHH
Confidence 000 000 000011234443 3445555 89999999999988775
No 329
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=73.25 E-value=23 Score=27.76 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=80.2
Q ss_pred ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHh-hcCCCHHHHHHHHH
Q 017651 191 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQL-VHSNDEEVLTDACW 266 (368)
Q Consensus 191 ~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~L~~l-L~~~d~~v~~~a~~ 266 (368)
++.+=+.+.+...+..+++++.+.....++..++.+++-|.++-..+.. ....+.+..++.. +.-+|+++..+=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 3456688889999999999997767788888888888888876533222 2224455444332 33457788877777
Q ss_pred HHHHhhcC-ChHHHHHHHHc--CChHH---HHHhcCCCCcchHHHHHHHHHHhh
Q 017651 267 ALSYLSDG-TNDKIQAVIEA--GVCPR---LVELLGHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 267 ~l~~l~~~-~~~~~~~~~~~--~~~~~---L~~lL~~~~~~v~~~a~~~l~nl~ 314 (368)
.|-.|+.. +++.++.+.+. +-+|. -+++..+++..+|.++-.++-|+.
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 77766632 33444444442 33444 456668888888887776666653
No 330
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=73.25 E-value=51 Score=33.12 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=54.3
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
+..|-.++. .+..|..++..||.++...+...-.+.+..+++-|+.+|..+.+..+...|+.+|.-+.-
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 334444443 356789999999999998888888899999999999999887677777788887776654
No 331
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=72.96 E-value=89 Score=32.46 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH
Q 017651 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (368)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 167 (368)
+-++-.+...+.+++-.. .... ...+|.|++-|.-.+...+|...+-+++.+|.+.. ..+ .-.+|.+..
T Consensus 945 ~~vra~~vvTlakmcLah-~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~-d~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAH-DRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT-DRYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhh-hHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH-HHhhHHHHH
Confidence 345566677777775432 1111 22588888888766656777777777777776321 122 246899999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC--hHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651 168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA--LIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 168 lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~--i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 234 (368)
.|.++++-++.+++-.|.+|.... .+...|. +.-++.+ -+.+++++..+=++++.+....
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLAL--LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999997653 2333342 2333333 3567788888888888877664
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.37 E-value=32 Score=35.06 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=96.2
Q ss_pred CchHHHHhcCcHHHHHHhhcCCCC-------HHHHHHHHHHHHHHhcCCCcchHHHhhC--------CChHHHHHhhCC-
Q 017651 108 PPIEEVIQSGVVPRFVEFLMREDY-------PQLQFEAAWALTNIASGTSENTKVVIDH--------GAVPIFVKLLAS- 171 (368)
Q Consensus 108 ~~~~~~i~~g~i~~Lv~lL~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~lL~~- 171 (368)
+..+.+.+.+++..++++...+-+ .+....|+.+|.-+..- ++.+..+... .+|..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 445567778888888888764321 24556666666655552 4444433321 244444443321
Q ss_pred ---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh--HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 017651 172 ---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL 246 (368)
Q Consensus 172 ---~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i--~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 246 (368)
.+++++..|+.++-|.....|.++...+..-+- ..=-..+...+......+.+.-.++-.++. .++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~n---------dGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGN---------DGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcC---------ccH
Confidence 378999999999999988877765543321000 000011222333445566666666666653 578
Q ss_pred HHHHHhhcCCC-----HHHHHHHHHHHHHhhcCCh
Q 017651 247 PALAQLVHSND-----EEVLTDACWALSYLSDGTN 276 (368)
Q Consensus 247 ~~L~~lL~~~d-----~~v~~~a~~~l~~l~~~~~ 276 (368)
.+|+.+|+... ..++.-||.+|..|+.++.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 88889887543 4689999999999998754
No 333
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=72.36 E-value=1.1e+02 Score=30.45 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=47.6
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
+..+-.+|..+++.+|...=.++|-++.++|.. ++++.|.++..+. +.++...|.++++-+.+|+-+
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~-D~eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDG-DLEVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCc-chHHHHHHHHHhccccCCcch
Confidence 445555566677888888888888887777733 3466677766666 788888888888888876543
No 334
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=71.22 E-value=4.9 Score=33.60 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=76.1
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHH-HHHHHhhcCChHHHHHHHHcCChHH
Q 017651 213 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDAC-WALSYLSDGTNDKIQAVIEAGVCPR 290 (368)
Q Consensus 213 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~-~~l~~l~~~~~~~~~~~~~~~~~~~ 290 (368)
.++..+.+..++.++...... .....++.+-.++..- +..+....| .+++.+.... ....+.
T Consensus 61 ~~~~~E~~~la~~il~~~~~~-------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---------~~~~~~ 124 (213)
T PF08713_consen 61 ESGYREERYLALLILDKRRKK-------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---------PEALEL 124 (213)
T ss_dssp CSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------GGHHHH
T ss_pred CCchHHHHHHHHHHhHHHhhh-------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------HHHHHH
Confidence 444555555555555432211 0012455555666543 455554443 3333333111 345677
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+...+.++++-.+..++.++.......+ .. .++..+...+.++ +..+++...|+|..++..+++.+...
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 7888888888888888766655554422 12 2344555666777 89999999999999999999887653
No 335
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=71.07 E-value=35 Score=31.17 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=69.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH-HHHHHcCChHH
Q 017651 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALPY 332 (368)
Q Consensus 254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~~ 332 (368)
..+++.+.-++|--+++=.++.. .++..+.+-|.+.++.|...|+-.++.++..+.... ..+-...+...
T Consensus 22 T~enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~e 92 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTE 92 (462)
T ss_pred ccccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHH
Confidence 45567888888776655443332 347888999999999999999999999998776433 34555678888
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 333 LLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 333 l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
|..++.+...+.|++...-++-+.+.
T Consensus 93 l~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 93 LRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 88888854377777776666665553
No 336
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=70.96 E-value=7.9 Score=28.33 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHH
Q 017651 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305 (368)
Q Consensus 261 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~ 305 (368)
....+..+..|+..+ +....+++.|+++.|+.+|.|++.++...
T Consensus 63 Ld~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 455677777888764 67788999999999999999998877543
No 337
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=70.50 E-value=91 Score=28.92 Aligned_cols=278 Identities=13% Similarity=0.090 Sum_probs=137.5
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc--C--------CCCHHHHHHHHHHHHHH
Q 017651 77 PAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM--R--------EDYPQLQFEAAWALTNI 145 (368)
Q Consensus 77 ~~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~--~--------~~~~~v~~~a~~~L~~l 145 (368)
..+++.|..+. ...+...+..++ +++.+ ....+.+.....+..|+.+-. . ++ ..+..+|..||.|+
T Consensus 48 e~i~~Vle~~~p~t~~v~~Letvr-ILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d-~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVR-ILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVAD-MHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHH-HHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccc-hHHHHHHHHHHHHH
Confidence 34555555555 344455566665 44543 222222222222344443322 1 12 47899999999999
Q ss_pred hcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHH-HHHhcCChHHHHHHhccc-----
Q 017651 146 ASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRD-LVLSQGALIPLLAQLNER----- 214 (368)
Q Consensus 146 ~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~~~~~~~-~i~~~~~i~~l~~~l~~~----- 214 (368)
..+++..+..+.+......+++.+.. ....+...=+..|.-+..-.+..|. .+.+.++++.+.+.+...
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids 204 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS 204 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence 99888899999988887777776542 1112222233333333322234444 445667888888877321
Q ss_pred ---------cchhHHHHHHHHHHHhhcCCCCCCh---hh----hhchHHHHHHhhcCC--CHHHHHHHHHHHHHh-----
Q 017651 215 ---------AKLSMLRNATWTLSNFCRGKPQPPF---DQ----VRPALPALAQLVHSN--DEEVLTDACWALSYL----- 271 (368)
Q Consensus 215 ---------~~~~~~~~a~~~L~~l~~~~~~~~~---~~----~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l----- 271 (368)
.+.+....++.++.|+......... .. ...+...++-.+... ..++-..+...+.|.
T Consensus 205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~ 284 (532)
T KOG4464|consen 205 EINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCL 284 (532)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhh
Confidence 1223445667777787766522111 11 122222222222111 122222222222221
Q ss_pred ---hc--CChHHHHHHHHc--CChHHHHHhcC---------CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651 272 ---SD--GTNDKIQAVIEA--GVCPRLVELLG---------HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335 (368)
Q Consensus 272 ---~~--~~~~~~~~~~~~--~~~~~L~~lL~---------~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ 335 (368)
+. ......+.+... -.+..+..+|. +...+...|.+.+|..++......+. .....++|.|.+
T Consensus 285 ~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rk-ylr~qVLPPLrD 363 (532)
T KOG4464|consen 285 DVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRK-YLRQQVLPPLRD 363 (532)
T ss_pred hcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHH-HHHHhcCCchhh
Confidence 11 111222222221 22333444442 22356678888999988886664444 444456666665
Q ss_pred hhCCCC----------------CccHHHHHHHHHHHHhc
Q 017651 336 LLTHSH----------------KKSIKKEACWTISNITA 358 (368)
Q Consensus 336 ll~~~~----------------~~~v~~~a~~~l~nl~~ 358 (368)
+=+.++ +..+|.-|+-.+.-+|.
T Consensus 364 V~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCK 402 (532)
T KOG4464|consen 364 VSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCK 402 (532)
T ss_pred hhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhh
Confidence 543331 34555556666655554
No 338
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=69.81 E-value=26 Score=27.40 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=82.2
Q ss_pred CCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHH
Q 017651 149 TSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGD--SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 225 (368)
Q Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~--~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~ 225 (368)
+++.-+.+.+...+..+++++.. ....++.+.+..++=+..+ ++..-..+...+.+..++..--.-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 35566788888999999999987 5677888888877766532 22233456677777777776545567888888777
Q ss_pred HHHHhhcCCCCCChhhh----hchHH---HHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 226 TLSNFCRGKPQPPFDQV----RPALP---ALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 226 ~L~~l~~~~~~~~~~~~----~~~~~---~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
.|-.|+-.-........ .+-+| .-+++..++|+-++..+-..+.++.
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 77777755422222111 22334 4556778888888888777666553
No 339
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=69.66 E-value=56 Score=37.64 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=115.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhcCCCcch---HHHh--hCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651 123 VEFLMREDYPQLQFEAAWALTNIASGTSENT---KVVI--DHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRD 196 (368)
Q Consensus 123 v~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~--~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nla~~~~~~~~ 196 (368)
..++...+ ++++..++..+..+......+. ...+ ....+..+..+ +.+.++.++......+. +.+-.
T Consensus 487 ~~~~~~~~-~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~ 559 (2341)
T KOG0891|consen 487 DSYLEADD-SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDA 559 (2341)
T ss_pred HHHHhccc-HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhh
Confidence 34444445 7888888665555544222100 0001 11122222222 22345555554444443 11112
Q ss_pred HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhh-chHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017651 197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDGT 275 (368)
Q Consensus 197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~ 275 (368)
...+.+.+..++..+ .+..-.++..+...+.+++...|........ ..+..+.++..+.-..+...+..-+..+....
T Consensus 560 ~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred hhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 233333444445555 6667778888888888888876522111111 11112222222222222223333333333222
Q ss_pred hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
...+...+ ...+..++..+..+++.+...++.+++.|+...........+ -.++.+.+.+.+..+..-+..+.|++++
T Consensus 639 ~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 639 PVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 22222222 234566777777888888999999999998766533433334 4555666666544356677888899999
Q ss_pred HhcC
Q 017651 356 ITAG 359 (368)
Q Consensus 356 l~~~ 359 (368)
+.+.
T Consensus 717 l~s~ 720 (2341)
T KOG0891|consen 717 LESS 720 (2341)
T ss_pred hhcc
Confidence 8873
No 340
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=69.19 E-value=5.6 Score=33.38 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=36.2
Q ss_pred HHHHhhcccCCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhcc
Q 017651 10 EVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGL 53 (368)
Q Consensus 10 ~~r~~~~k~~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~ 53 (368)
..|...||+-.+..|.|.||++...++.|.+|-+...+-|++..
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~ 67 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAV 67 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcc
Confidence 37889999955556777777777999999999999999998754
No 341
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=69.17 E-value=4.7 Score=21.54 Aligned_cols=20 Identities=15% Similarity=0.606 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHhh
Q 017651 344 SIKKEACWTISNITAGNRDQIQ 365 (368)
Q Consensus 344 ~v~~~a~~~l~nl~~~~~~~i~ 365 (368)
.+|.+|+++|+++ |+++.+.
T Consensus 2 ~vR~~aa~aLg~~--~~~~a~~ 21 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEAVP 21 (30)
T ss_pred HHHHHHHHHHHHc--CCHhHHH
Confidence 5899999999998 4454443
No 342
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=69.14 E-value=65 Score=26.69 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=87.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHHH
Q 017651 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSPRCRDL 197 (368)
Q Consensus 120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nla~~~~~~~~~ 197 (368)
..+..++.++. -+.+..|+.++......... ..++.+-.++.. ++..+.+.. ..+++.+....+.
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~---- 120 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPE---- 120 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGG----
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHH----
Confidence 44556667766 78888888888654431110 134555555554 566666655 4555655432111
Q ss_pred HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277 (368)
Q Consensus 198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 277 (368)
..+.+..-+ .+++.-.++.++-++...... .....++..+...+.+++..|+..+.|+|..++..+++
T Consensus 121 -----~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 121 -----ALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp -----HHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred -----HHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 234444445 777888888877666555443 22345666677777888899999999999999988887
Q ss_pred HHHHHHHc
Q 017651 278 KIQAVIEA 285 (368)
Q Consensus 278 ~~~~~~~~ 285 (368)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666554
No 343
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=68.28 E-value=30 Score=31.33 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHhhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHH------hc
Q 017651 133 QLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLASP---SDDVREQAVWALGNVAGDSPRCRDLVL------SQ 201 (368)
Q Consensus 133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~---~~~v~~~a~~~L~nla~~~~~~~~~i~------~~ 201 (368)
.+|..|+.++..+.. .+.....++..+ .+.-|++++.-+ ...++..|+.+|..|+.+.+.+.+.+- .+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 556666666665554 455666677666 889999999853 468999999999999988766655443 45
Q ss_pred CChHHHHHH
Q 017651 202 GALIPLLAQ 210 (368)
Q Consensus 202 ~~i~~l~~~ 210 (368)
|++..+++.
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 555555554
No 344
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.24 E-value=81 Score=32.01 Aligned_cols=190 Identities=14% Similarity=0.242 Sum_probs=100.8
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC-ChHHHH----Hhh---CC----CCHHHHHHHHHHHH
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG-AVPIFV----KLL---AS----PSDDVREQAVWALG 185 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~----~lL---~~----~~~~v~~~a~~~L~ 185 (368)
++|.++.+|..+. ..+..+|+.++-.+-.-.+.....+...+ +.|.+. .+. +. +++.+-....+.++
T Consensus 499 ~~p~li~~L~a~s-~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 499 LLPRLIRFLEAES-RVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHhccCcc-hHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 5899999999988 78999999999887653333222233222 222222 222 22 33444443333333
Q ss_pred HhhCCChhhHHHHHhcC--ChHHHHHHh----ccccchhHHH----HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC
Q 017651 186 NVAGDSPRCRDLVLSQG--ALIPLLAQL----NERAKLSMLR----NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS 255 (368)
Q Consensus 186 nla~~~~~~~~~i~~~~--~i~~l~~~l----~~~~~~~~~~----~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~ 255 (368)
-+ .+ .++..+ .+..|.+.+ +...++..-. ..+-++...|...|.........++|.+...|+.
T Consensus 578 i~-~~------~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 578 IL-QS------AIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred hC-HH------hhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 22 11 111110 122222222 2233454443 3444444555554444445556788888888877
Q ss_pred CCHHHHHHHHHHHHHhhcCChH----HHHHH----------HHcCChHHHHHhcC----CCCc-----chHHHHHHHHHH
Q 017651 256 NDEEVLTDACWALSYLSDGTND----KIQAV----------IEAGVCPRLVELLG----HPSP-----SVLIPALRTVGN 312 (368)
Q Consensus 256 ~d~~v~~~a~~~l~~l~~~~~~----~~~~~----------~~~~~~~~L~~lL~----~~~~-----~v~~~a~~~l~n 312 (368)
+=.+..-++...++-+...... ....+ -..|-++.++++|. .+.. +-....++++..
T Consensus 651 DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqk 730 (960)
T KOG1992|consen 651 DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQK 730 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHH
Confidence 7788888888888888754322 22222 22477888888773 2221 113456666666
Q ss_pred hhc
Q 017651 313 IVT 315 (368)
Q Consensus 313 l~~ 315 (368)
+..
T Consensus 731 Lia 733 (960)
T KOG1992|consen 731 LIA 733 (960)
T ss_pred Hhc
Confidence 654
No 345
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=67.53 E-value=31 Score=25.54 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=49.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc-----CCCCHHHHHHHHHHHHHHh
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-----REDYPQLQFEAAWALTNIA 146 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~-----~~~~~~v~~~a~~~L~~l~ 146 (368)
.+..|.+.|.+.++..++.|+..+..++.....+....+....++..++.+.. ...+..+|..+...+...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 46677778888899999999999998887653444455656666666655311 1113678888887776554
No 346
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=67.52 E-value=5.4 Score=29.18 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHH
Q 017651 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178 (368)
Q Consensus 136 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~ 178 (368)
...+..|..++. .|+.-..+++.|+++.|+.+|.++|..|..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 455667777777 588889999999999999999998877653
No 347
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=66.81 E-value=1.5e+02 Score=30.00 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=56.5
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
..++.+|..+.+..=+++...++.++..|..+.++.-. .++..++.-|.+++..+-..|-..|.+|.+..|
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 45666666666666689999999999999988777644 346678888999999999999999999877665
No 348
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=65.03 E-value=78 Score=28.38 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHc------------CChHHHHHhcC-----CCCcchHHHHHHHHHHhhcCChH
Q 017651 257 DEEVLTDACWALSYLSDGTNDKIQAVIEA------------GVCPRLVELLG-----HPSPSVLIPALRTVGNIVTGDDF 319 (368)
Q Consensus 257 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~------------~~~~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~~ 319 (368)
|+.-.--|+.++.++..+++...+.+..- ..++.+..+|. ..++.++..-+..|.-...+++.
T Consensus 110 dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~ 189 (312)
T PF04869_consen 110 DPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPD 189 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHH
Confidence 44334457888888888777665544221 23555666663 34677777777888888888988
Q ss_pred HHHHHHHcC-ChHHHHHhhCCC--CCccHHHHHHHHHHHHhc
Q 017651 320 QTQCIITYG-ALPYLLGLLTHS--HKKSIKKEACWTISNITA 358 (368)
Q Consensus 320 ~~~~~~~~g-~l~~l~~ll~~~--~~~~v~~~a~~~l~nl~~ 358 (368)
.+..++..+ .++.|+...... .+.-|+--++..|+-+-.
T Consensus 190 AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 190 AVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 888888875 699999875432 256677777777776654
No 349
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=64.82 E-value=22 Score=23.79 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 017651 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289 (368)
Q Consensus 222 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 289 (368)
..+|+++.|--. |.........+...+..-+..-++....+++|.++.+-..+.+.++.+.+...+.
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 455666666633 4333334455666677777777899999999999999888888877776654443
No 350
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=64.76 E-value=1.5e+02 Score=29.41 Aligned_cols=79 Identities=22% Similarity=0.130 Sum_probs=51.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCC------CchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERS------PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~------~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+.+.-+++.++.+|++++..|+..++.....+.+ .+.+.+.. -...|.++..+-.++..+...+-+|.-++-
T Consensus 48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVLAM 125 (878)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHHhe
Confidence 3588999999999999999999999988654311 11222221 122333333332226788999999999987
Q ss_pred CCCcchH
Q 017651 148 GTSENTK 154 (368)
Q Consensus 148 ~~~~~~~ 154 (368)
..++...
T Consensus 126 t~se~~~ 132 (878)
T KOG2005|consen 126 TMSERGE 132 (878)
T ss_pred eecccch
Confidence 5544443
No 351
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=64.02 E-value=1.3e+02 Score=28.45 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH
Q 017651 88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (368)
Q Consensus 88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 167 (368)
...+..|+.+|..+++.-..+....+. -+.|+.+|+++. ..-|.-|+-++...+.........-.-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 346788899999887754233333332 126899999987 677788888888888743322111101123456666
Q ss_pred hhCC
Q 017651 168 LLAS 171 (368)
Q Consensus 168 lL~~ 171 (368)
.|.+
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 6663
No 352
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.45 E-value=2.4e+02 Score=30.85 Aligned_cols=254 Identities=13% Similarity=0.170 Sum_probs=133.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHH----HHHhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR----FVEFLMREDYPQLQFEAAWALTNIASGTS 150 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~----Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~ 150 (368)
.+..+++.|...|+.++.+|+..+..+.... ..... .|++|. +.++..+++ ..||..+-.++..+...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~---~~e~~--~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTS---DTEEL--KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccc---cchHH--hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999999999997543 22222 223433 234455566 8999999999999877422
Q ss_pred cchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHHhcc-c-------------
Q 017651 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNE-R------------- 214 (368)
Q Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~--~i~~l~~~l~~-~------------- 214 (368)
.......+ ..++...-.-.+.+..+...|...+....... ..+......+ ......+.+.. +
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~e-k~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEE-KDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcChh-hhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 22222222 23444444444555666666666666554422 1222222111 11222222110 0
Q ss_pred ----cchhHHHHHHHHHHHhhcCC-CCCChh----hhhch--HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 017651 215 ----AKLSMLRNATWTLSNFCRGK-PQPPFD----QVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 283 (368)
Q Consensus 215 ----~~~~~~~~a~~~L~~l~~~~-~~~~~~----~~~~~--~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 283 (368)
....+...++-++..+.... +..... ....+ -..+..++.+..+.+......++..++..-.... .-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~-~~~ 272 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV-MES 272 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc-chh
Confidence 01234444555555544221 111111 11222 2457788888889999999999988886533331 111
Q ss_pred HcCCh-HHHHHhcCCCCcchHHHHHHHHHHhh-cCChHHHHH--HHHcCChHHHHHhhC
Q 017651 284 EAGVC-PRLVELLGHPSPSVLIPALRTVGNIV-TGDDFQTQC--IITYGALPYLLGLLT 338 (368)
Q Consensus 284 ~~~~~-~~L~~lL~~~~~~v~~~a~~~l~nl~-~~~~~~~~~--~~~~g~l~~l~~ll~ 338 (368)
+...+ +.+.....+.+ .+.......+.... ...++.... ....|+++.+..++.
T Consensus 273 ~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 12223 33334444444 45555555555333 222222221 245578888888887
No 353
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=61.80 E-value=1.9e+02 Score=29.50 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=80.6
Q ss_pred hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh---hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 017651 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD---QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280 (368)
Q Consensus 204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~ 280 (368)
...+...+ ..++..+...++.++.+++.-....... ............ -..+......+|..+++.+++...
T Consensus 443 W~~l~~~~-~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~----~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 443 WKALLKSL-DSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKS----LGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34445555 4667788888889999888655211111 111122222211 246778888999999999888887
Q ss_pred HHHH-cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCC--hHHHHHHHHc
Q 017651 281 AVIE-AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD--DFQTQCIITY 327 (368)
Q Consensus 281 ~~~~-~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~ 327 (368)
.++. .+....++.++-+++.++..+|..+|..+.... .+..+.+++.
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~ 567 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQS 567 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 7765 588899999999999999999999999987533 2444555543
No 354
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=61.19 E-value=13 Score=30.93 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHhcCcHHHHHHhhcCCCC-----------------HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHH
Q 017651 113 VIQSGVVPRFVEFLMREDY-----------------PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175 (368)
Q Consensus 113 ~i~~g~i~~Lv~lL~~~~~-----------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~ 175 (368)
+.+.|++..++.+|..+-. ..+-..+...|..++.++.++...+.+. ++.++..+......
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~ 116 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIG 116 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhcc
Confidence 4467777777777754211 3567788899999999988888877763 44333433322222
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651 176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233 (368)
Q Consensus 176 v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 233 (368)
.--.+..++..+..++++....+.+. .+..++.++..+. -....+..|..+|..
T Consensus 117 ~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 117 YGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp TTHHHHHHHHHHHTT-------------------------------------------
T ss_pred CCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcC---CChHHHHHHhhhccc
Confidence 22356778888888888877776655 4888898885533 122345556666654
No 355
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.48 E-value=75 Score=34.26 Aligned_cols=224 Identities=13% Similarity=0.090 Sum_probs=110.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC----C---CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 017651 127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA----S---PSDDVREQAVWALGNVAGDSPRCRDLVL 199 (368)
Q Consensus 127 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~---~~~~v~~~a~~~L~nla~~~~~~~~~i~ 199 (368)
..+. .+++.....++.++-....+. ++. | =+.+...++ . ....+...+..+|.-|+.|--..-..-.
T Consensus 852 s~~~-~evr~~sl~~l~silet~ge~---ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sc 925 (1610)
T KOG1848|consen 852 SSRG-VEVRISSLEALVSILETVGEH---LLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSC 925 (1610)
T ss_pred cCcc-ceeeHHHHHHHHHHHhccchh---hcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHH
Confidence 3444 678888888888887632221 221 1 233333332 2 3567788888888888776422111222
Q ss_pred hcCChHHHHHHhccccchhHHHHHHHHHHHhh---cCC--CCCChhhh------------------hchH----HHHHHh
Q 017651 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFC---RGK--PQPPFDQV------------------RPAL----PALAQL 252 (368)
Q Consensus 200 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~---~~~--~~~~~~~~------------------~~~~----~~L~~l 252 (368)
-.+.++.+...-.+..|..+--.|.+.++++. ..+ ........ +++. ..|.++
T Consensus 926 i~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~ 1005 (1610)
T KOG1848|consen 926 ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADL 1005 (1610)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHH
Confidence 23467777777666666666555554444444 331 00000000 1111 112222
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhcCCC---------C----cchHHHHHHHHHHhhcCCh
Q 017651 253 VHSNDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHP---------S----PSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 253 L~~~d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~---------~----~~v~~~a~~~l~nl~~~~~ 318 (368)
..++-.+|+..|+.++..+......... ..=+.-+...++++|... . ...-+..+.+|+-|+.-.+
T Consensus 1006 ~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~ 1085 (1610)
T KOG1848|consen 1006 CEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFS 1085 (1610)
T ss_pred hccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHH
Confidence 2233366777777766666533211100 011111233445555411 0 1223456677777776555
Q ss_pred HHHHHHHHc--------CChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 319 FQTQCIITY--------GALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 319 ~~~~~~~~~--------g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
++...+... -++..+..++.+. ++++.-.|..++..+.
T Consensus 1086 e~fk~llnln~f~~vwe~ll~flkrl~s~~-s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1086 ENFKLLLNLNGFLDVWEELLQFLKRLHSDI-SPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHH
Confidence 566655543 2344555555666 7788877777665544
No 356
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=60.31 E-value=52 Score=25.54 Aligned_cols=74 Identities=8% Similarity=0.008 Sum_probs=51.7
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHH-HHHhhcCCC--CHHHHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR-FVEFLMRED--YPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~-Lv~lL~~~~--~~~v~~~a~~~L~~l~~ 147 (368)
+++..+.+.|++ .++..++.|+..+..++.........++...+++.. |+.++.... ...|+..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 456777777764 578888888888777766543334455667788886 888886321 25788888888887775
No 357
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=60.19 E-value=43 Score=35.61 Aligned_cols=108 Identities=14% Similarity=0.053 Sum_probs=68.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 240 (368)
..|.+..++.+....++..|+.+++-++... .++.... ++..++.++...++..-+..+...+..++.........
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~--v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSA--TRETMAT--VINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccc
Confidence 4677778888899999999999999998664 2333332 45555555533233333334444455555443222222
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
...-+++.|...+..++..++..+..+++.+.
T Consensus 893 ~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 893 YNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred cceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 22346778888888888888888888888775
No 358
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.10 E-value=1.7e+02 Score=28.32 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=75.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc----c---cchhHHHHHHHHHHHhhcCCCCC
Q 017651 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE----R---AKLSMLRNATWTLSNFCRGKPQP 237 (368)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~----~---~~~~~~~~a~~~L~~l~~~~~~~ 237 (368)
+...+-+.++..+..|+..|.. |+ .... .+|.++.++.. + .|......+...++.|..++...
T Consensus 212 It~a~~g~~~~~r~eAL~sL~T---Ds-GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 212 ITEACTGSDEPLRQEALQSLET---DS-GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHhcCCHHHHHHHHHhhcc---Cc-cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 3333444566666666665543 21 1111 35666666632 2 46677788888888888775433
Q ss_pred ChhhhhchHHHHHHhhcC----------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651 238 PFDQVRPALPALAQLVHS----------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298 (368)
Q Consensus 238 ~~~~~~~~~~~L~~lL~~----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~ 298 (368)
-...+..++|.++.++-+ +.+.++.-|+..+.+++......... +...+...+.+.+.++
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDN 351 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCC
Confidence 334557788887776521 23668888999999999765555444 4455667777776544
No 359
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=59.07 E-value=17 Score=29.78 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=51.2
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651 289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+.+.....+++.-++..++.++........ ... .+++.+-.++.++ +..|++...|+|..++...++.+..+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 567778888888888888777776654411 122 2344555555666 89999999999999999888776543
No 360
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=57.40 E-value=2e+02 Score=28.28 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh--hhhhchHHH
Q 017651 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRPALPA 248 (368)
Q Consensus 171 ~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~ 248 (368)
+-++.++..|...|+--.+.-|. .+..-.++.+.--.| .+.+..++.....++..||...|.... .....+...
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34677788888888777766654 344444566666666 777899999999999999998766552 223456667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 249 LAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 249 L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
+++++..+..-|+..++..+.++.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHH
Confidence 777777664448888888777765
No 361
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.11 E-value=66 Score=29.57 Aligned_cols=114 Identities=10% Similarity=0.163 Sum_probs=78.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK 154 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 154 (368)
.+..|+..+++-+..++..|+..+..++.. .+..-..-...+++.+..+..+.+ ..+|......+-++.........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s--~p~~l~~~~~~ll~~~~~~i~D~~-~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKS--HPAELQSHLYALLQKLRELILDDD-SLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHh--ChHHHHHHHHHHHHHhhhhhcCcc-ccHHHHHHHHHHHHHhhcchhhh
Confidence 588999999999999999999999999864 222222223445677777777766 68888888888776553222221
Q ss_pred HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 017651 155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (368)
Q Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~ 191 (368)
...-.=.++++...|....++++.-++..|.-++...
T Consensus 136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 1111123455566666778899999999988887655
No 362
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.99 E-value=71 Score=30.38 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=67.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH-HHHHcCCh
Q 017651 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CIITYGAL 330 (368)
Q Consensus 252 lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l 330 (368)
.|..+|+.+-...|..|..--.+.. .++..|.+.+.+.++.++..|+.+|--++..+..... .|.+.+++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4456677777777766644333332 2466778888888889999999988888887776555 57788999
Q ss_pred HHHHHhhCCC-CCccHHHHHHHHHH
Q 017651 331 PYLLGLLTHS-HKKSIKKEACWTIS 354 (368)
Q Consensus 331 ~~l~~ll~~~-~~~~v~~~a~~~l~ 354 (368)
+-++.+.... .+..||+.+.-.|-
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHH
Confidence 9988888776 46678887766553
No 363
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=56.81 E-value=2.1e+02 Score=28.42 Aligned_cols=176 Identities=13% Similarity=-0.004 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHh----cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh---h
Q 017651 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLS----QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV---R 243 (368)
Q Consensus 171 ~~~~~v~~~a~~~L~nla~~~~~~~~~i~~----~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~ 243 (368)
.-..+++--|+.+|.-+..+.+.. ..+.. +.++..++..+. .++..+-.++.+|.|+..+. ....... .
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~-s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~-~g~~~~~s~~~ 630 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSN-SLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNP-AGRELFMSRLE 630 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchh-hhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCH-HHHHHHHHHHH
Confidence 344666677777777666554332 22221 223444444442 35666677889999988763 2211111 1
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc---CC--CCcchHHHHHHHHHHhhcCCh
Q 017651 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---GH--PSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 244 ~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL---~~--~~~~v~~~a~~~l~nl~~~~~ 318 (368)
.++..+...=..++..++........|++-. .++.--+.|..+.+...+ .. ++.+..-..+.++|+++...+
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence 2222222222223344544433333333311 001111123333333333 22 233445677889999998877
Q ss_pred HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354 (368)
Q Consensus 319 ~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~ 354 (368)
...+ +-..--+..++.-+++..+....+..+..+.
T Consensus 708 ~~~~-~A~~~~v~sia~~~~~~~~~~~~k~~a~~il 742 (745)
T KOG0301|consen 708 SVIQ-LAKNRSVDSIAKKLKEAVSNPSGKNIARDIL 742 (745)
T ss_pred HHHH-HHHhcCHHHHHHHHHHhccCchhhHHHHHHH
Confidence 5555 4343456666766665435555665555433
No 364
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.71 E-value=25 Score=35.94 Aligned_cols=94 Identities=16% Similarity=0.072 Sum_probs=65.6
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhh----cCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLS----DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
..++..-..+|.+.+-.++..++.++.... +.++..... + +..-+.++..+..+++-+...|+.+|-+++..++
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPl-v-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPL-V-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHH-H-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 345555566788899999999999888654 343333322 2 2457888888888999999999999999988766
Q ss_pred HHHHHHHHcCChHHHHHhhC
Q 017651 319 FQTQCIITYGALPYLLGLLT 338 (368)
Q Consensus 319 ~~~~~~~~~g~l~~l~~ll~ 338 (368)
.....=+-..++|.+-.+++
T Consensus 880 DFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44433333366777665554
No 365
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=56.60 E-value=1.5e+02 Score=26.51 Aligned_cols=164 Identities=10% Similarity=0.148 Sum_probs=98.7
Q ss_pred HHHHHhcCChHHHHHHhcc----------------------ccchhHHHHHHHHHHHhhcCCCCC---------------
Q 017651 195 RDLVLSQGALIPLLAQLNE----------------------RAKLSMLRNATWTLSNFCRGKPQP--------------- 237 (368)
Q Consensus 195 ~~~i~~~~~i~~l~~~l~~----------------------~~~~~~~~~a~~~L~~l~~~~~~~--------------- 237 (368)
+..+.+.|+++.|-+++.. +++..++...+..+.++|...+..
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3456677777777766621 112246677888888888832110
Q ss_pred -------ChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChH--HHHHHHHcCChHHHHHhcCCC---CcchH
Q 017651 238 -------PFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTND--KIQAVIEAGVCPRLVELLGHP---SPSVL 303 (368)
Q Consensus 238 -------~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~~~~L~~lL~~~---~~~v~ 303 (368)
......|.+..+++.+... +...+...+.|+-.+..+.+. ....+.+.|+++.++.-+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 0111246666666666433 567788888888888877655 334677889999999877444 34688
Q ss_pred HHHHHHHHHhhcCChHHHHHHHH---cCChHHHHHhhCCC--CCccHHHHHHHHHHHHhc
Q 017651 304 IPALRTVGNIVTGDDFQTQCIIT---YGALPYLLGLLTHS--HKKSIKKEACWTISNITA 358 (368)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~~~~---~g~l~~l~~ll~~~--~~~~v~~~a~~~l~nl~~ 358 (368)
..+.-.+|-+..++......+-. ...+..++..+... +....-+....++.++..
T Consensus 162 Q~~FDLLGELiK~n~~~f~~l~~~l~~~kF~~fl~~v~~nlVDSNvfiRsi~Ls~~~f~~ 221 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDAFQRLNKYLNNDKFQRFLEVVSDNLVDSNVFIRSIVLSLDHFKN 221 (303)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999988755443322 11233333333221 122344555555555554
No 366
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=56.44 E-value=66 Score=22.46 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=44.1
Q ss_pred HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh----CCCCHHHHHHHHHHHH
Q 017651 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL----ASPSDDVREQAVWALG 185 (368)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~ 185 (368)
.+..++.++..++.+..+.++|...+.|+..+..... .-+..| =+.++..+ .+++..+...|..++-
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3455688888887665558999999999999987422 223444 34444433 3456777777776653
No 367
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=56.11 E-value=1.1e+02 Score=30.74 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 017651 87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~ 148 (368)
++.+.-.++.+++..+| =-.+..++..-+++.|.+++.. .++|..|+.|+..+.+.
T Consensus 206 npgl~~~cLdc~g~fVS---WIdInLIaNd~f~nLLy~fl~i---eelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVS---WIDINLIANDYFLNLLYKFLNI---EELRIAACNCILAIVSK 261 (980)
T ss_pred CchHHHHHHHHHHHHhh---hhhhhhhhchhHHHHHHHHHhH---HHHHHHHHHHHHHHHhc
Confidence 78888888888888875 3445666777788999999883 68999999999998874
No 368
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=55.86 E-value=82 Score=25.15 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=52.6
Q ss_pred cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 201 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
.|.+...+..+....|..+...++.++.+.... ..-.......++|.+..+|.+..+.-...++..+..+...
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 344555666655567888888888877755443 2334445567899999999999999888999888887754
No 369
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=55.75 E-value=57 Score=30.83 Aligned_cols=104 Identities=9% Similarity=0.005 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC----CCChhhhhchHH
Q 017651 172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP----QPPFDQVRPALP 247 (368)
Q Consensus 172 ~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~~ 247 (368)
+|+.+-....+++.-+-..-......++.. .+..+....++..++..-.....+++.+.+... .........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 567777777777766655544444444443 333333334345578887777777777766432 122234467889
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 017651 248 ALAQLVHSNDEEVLTDACWALSYLSDGTN 276 (368)
Q Consensus 248 ~L~~lL~~~d~~v~~~a~~~l~~l~~~~~ 276 (368)
.+..+|+.+=.+..-++...++.|.+..+
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999988878889999999998875543
No 370
>PLN03205 ATR interacting protein; Provisional
Probab=55.48 E-value=40 Score=31.00 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=68.5
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHH---HHHh-cCCCCcchHHHHHHHHHHhhc
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPR---LVEL-LGHPSPSVLIPALRTVGNIVT 315 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~---L~~l-L~~~~~~v~~~a~~~l~nl~~ 315 (368)
..+++.|+.+..-++..+...+++.|..+..+ +....+.--+.+++.. +.+. ..+....++..|+.++.-|..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 45666666666666666666666666655422 2222222222333322 2222 145667889999998888876
Q ss_pred CChHH--HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651 316 GDDFQ--TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355 (368)
Q Consensus 316 ~~~~~--~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n 355 (368)
.++.. ++.+-...+++.+.++|+...-..|+|+|...+.-
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfL 443 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYL 443 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 55533 33344446788888999877577899999876543
No 371
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=54.50 E-value=76 Score=28.70 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhcCCCC---cchHHHHHHHHHHhhcCChHHHHHHH-------Hc
Q 017651 260 VLTDACWALSYLSDGTNDKIQAVIEAG--VCPRLVELLGHPS---PSVLIPALRTVGNIVTGDDFQTQCII-------TY 327 (368)
Q Consensus 260 v~~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~~-------~~ 327 (368)
++-.|+.++.++.. +......++..+ ++..|+.++..++ ..++..|+++|..|+.......+ ++ .+
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~-V~~aLg~~v~H 315 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD-VLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH-HHHHhcCCCCc
Confidence 34444444444443 344556677666 9999999996543 57899999999999986653333 33 35
Q ss_pred CChHHHHH
Q 017651 328 GALPYLLG 335 (368)
Q Consensus 328 g~l~~l~~ 335 (368)
|++..+++
T Consensus 316 GiL~~llR 323 (329)
T PF06012_consen 316 GILPQLLR 323 (329)
T ss_pred ccHHHHHH
Confidence 77776664
No 372
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.62 E-value=55 Score=35.18 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---cc---cchhHHHHHHHHHHHhhcCC-CCCChhhh
Q 017651 170 ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ER---AKLSMLRNATWTLSNFCRGK-PQPPFDQV 242 (368)
Q Consensus 170 ~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~---~~---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 242 (368)
..+..+++...+.++.++....-+ .++. | .+.+.+.+. .. ...++.+.+..+|.-++.+. +..+...+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 346677888888888888754322 1222 2 455555442 11 25567788888888888877 67777777
Q ss_pred hchHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 017651 243 RPALPALAQLVH-SNDEEVLTDACWALSYLSD 273 (368)
Q Consensus 243 ~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~ 273 (368)
.++++.+..+-. ..|..+--.|++.++.+++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 888888777763 4466666666666666553
No 373
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=51.97 E-value=40 Score=26.37 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651 177 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 177 ~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 231 (368)
...|+..||.|-+.. -+.+|+.+| .+++..+...++.+|.+-.
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L-~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLL-KSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG---G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHH-cCCcHHHHHHHHHHHHhhH
Confidence 345666666665543 256666666 5556666666666666533
No 374
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.20 E-value=42 Score=34.28 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCcchH-----------------------------------HHhhCCChHHHHHhhCC----
Q 017651 131 YPQLQFEAAWALTNIASGTSENTK-----------------------------------VVIDHGAVPIFVKLLAS---- 171 (368)
Q Consensus 131 ~~~v~~~a~~~L~~l~~~~~~~~~-----------------------------------~~~~~g~i~~L~~lL~~---- 171 (368)
+|+++..|+.++.|+....++++. .+-.+++|..|+.+|+-
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 489999999999998876544432 24456789999999985
Q ss_pred -CCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 017651 172 -PSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201 (368)
Q Consensus 172 -~~~~v~~~a~~~L~nla~~~~~~~~~i~~~ 201 (368)
..+.++..|+.+|.-|+.++ ..|.++.+.
T Consensus 755 t~aD~IRalAc~~L~GLaR~~-tVrQIltKL 784 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDD-TVRQILTKL 784 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCc-HHHHHHHhC
Confidence 34689999999999999886 577766553
No 375
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=50.99 E-value=82 Score=30.18 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=47.0
Q ss_pred CChHHHHHhcCCCCcchHHHHHHHHHHh-hcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 286 GVCPRLVELLGHPSPSVLIPALRTVGNI-VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 286 ~~~~~L~~lL~~~~~~v~~~a~~~l~nl-~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
++++.+++++.. +.+..-.+++|+-= ........+.+.+.++++.|+.+|....++.++..|+-+|..|..
T Consensus 21 ~~v~~llkHI~~--~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 21 NFVDNLLKHIDT--PAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred cHHHHHHHhcCC--cHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 667777777643 34444444444400 011224455566789999999999866688899999999888865
No 376
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=50.52 E-value=1.3e+02 Score=23.98 Aligned_cols=84 Identities=11% Similarity=0.026 Sum_probs=50.8
Q ss_pred HhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCC--HHHHHHHHHHHHHhhcCC
Q 017651 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ-LVHSND--EEVLTDACWALSYLSDGT 275 (368)
Q Consensus 199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-lL~~~d--~~v~~~a~~~l~~l~~~~ 275 (368)
+.....+.+++.+ .+.+..+...++.++..+.......-....+-+++.+.. ++.++. ..-+..++.++..++..+
T Consensus 70 lk~~l~~~Ll~~~-~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 70 LKDDLCPALLKNL-SSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 3344666777776 334578888888888888755311111222345555554 665544 456778999999999765
Q ss_pred hHHHHHHH
Q 017651 276 NDKIQAVI 283 (368)
Q Consensus 276 ~~~~~~~~ 283 (368)
.-..+..+
T Consensus 149 ~~l~~lf~ 156 (168)
T PF12783_consen 149 QFLVDLFV 156 (168)
T ss_pred hHHHHHHH
Confidence 54444443
No 377
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=50.08 E-value=1.2e+02 Score=23.53 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=53.9
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHH-HHHHhccc--cchhHHHHHHHHHHHhhcCC
Q 017651 161 AVPIFVKLLA-SPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIP-LLAQLNER--AKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 161 ~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~-l~~~l~~~--~~~~~~~~a~~~L~~l~~~~ 234 (368)
++..|-.-|. +.++.++..|+..|-.+..+. +.+...+...+++.. |++++... .+..++..++..+...+...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4555555555 357888888888888887765 357788888889997 88998532 34578888888888777654
No 378
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=49.94 E-value=1.1e+02 Score=22.87 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=45.7
Q ss_pred hhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcch-HHHHHHHHHHhhcCC
Q 017651 242 VRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSV-LIPALRTVGNIVTGD 317 (368)
Q Consensus 242 ~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v-~~~a~~~l~nl~~~~ 317 (368)
+..++|.+.+.|. +..++.+..+.-.++.|+...+=. ..++..+++.+ .+..... ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~------~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS------DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc------HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3457899999998 677899999999999998653211 11233333333 2222222 478899999888644
No 379
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.64 E-value=21 Score=32.11 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--CCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLL--THSHKKSIKKEACWTISNITAGNRDQ 363 (368)
Q Consensus 305 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll--~~~~~~~v~~~a~~~l~nl~~~~~~~ 363 (368)
+..+.|+++|...++..+.+-+.|+++.++.-. .+. +|-+++-...++.++...+.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~N 434 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIEN 434 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhh
Confidence 478899999999988888898999988877533 334 8999999999999999865443
No 380
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=48.98 E-value=1e+02 Score=23.22 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHH
Q 017651 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRD 362 (368)
Q Consensus 304 ~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~ 362 (368)
-..+.=|++++..+..... .++++|..-|++. ++.|+..+..+|-+++. |+++
T Consensus 19 gy~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred hHHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHH
Confidence 3344455556555544443 2455677777776 67777777777777776 4443
No 381
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=48.72 E-value=94 Score=29.80 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=49.4
Q ss_pred HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-------------CcchHHHhhCCChHHHHHhhCC-CCHHH
Q 017651 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-------------SENTKVVIDHGAVPIFVKLLAS-PSDDV 176 (368)
Q Consensus 111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-------------~~~~~~~~~~g~i~~L~~lL~~-~~~~v 176 (368)
+.+.+.++|+.|+.+|....+++++..|+..|..|..-+ ......+.....+..|+..+-. .....
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcch
Confidence 445679999999999986666889999998877765421 1223344555566666664442 22444
Q ss_pred HHHHHHHHHHhh
Q 017651 177 REQAVWALGNVA 188 (368)
Q Consensus 177 ~~~a~~~L~nla 188 (368)
...++.++..+.
T Consensus 136 lvn~v~IlieLI 147 (475)
T PF04499_consen 136 LVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 382
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=47.72 E-value=38 Score=25.23 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=32.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 017651 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200 (368)
Q Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~ 200 (368)
+|+.|+.-|.+++.+|...|+.+|...+.+. .+.+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999999999999999999887 45455544
No 383
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.70 E-value=1.5e+02 Score=27.38 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=77.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCC-hHHHHH
Q 017651 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-DFQTQC 323 (368)
Q Consensus 245 ~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~ 323 (368)
.+.-|+..+.+.+..++.+|+.-|-.+....++.... .-..+++.+..+..+.+..+|......+-.+.... ++. ..
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hc
Confidence 4556677778999999999999888777654443321 22346777777778888888988888888765432 222 22
Q ss_pred HHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651 324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360 (368)
Q Consensus 324 ~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 360 (368)
.+-.=+.+++...+.+. .+.++..+...++-+....
T Consensus 137 p~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred chHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 22223466667777777 7888888888888777543
No 384
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=46.92 E-value=2e+02 Score=25.14 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC-CHHH
Q 017651 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQ 363 (368)
Q Consensus 320 ~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~ 363 (368)
....+.+.|++..|+.+.++.+......-..-+++.+..| +++.
T Consensus 170 li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p~~ 214 (266)
T PF04821_consen 170 LIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDPES 214 (266)
T ss_pred HHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCHHH
Confidence 4455667799999999998874444444666666666654 4444
No 385
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=44.83 E-value=1.2e+02 Score=22.21 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=49.4
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhc------CCCCcchHHHHHHHHHHhh
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQAVIEAGVCPRLVELL------GHPSPSVLIPALRTVGNIV 314 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~L~~lL------~~~~~~v~~~a~~~l~nl~ 314 (368)
..++..|.+-|.+.++.++..++..|-+++.+..+. ...+....++..++.+. ...+..++..+...+...+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 357777888888889999999999999999765444 34455555565555431 1225677777777766543
No 386
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=44.11 E-value=58 Score=23.91 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=47.9
Q ss_pred CChHHHHHhcCCCC--c--chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhc-C
Q 017651 286 GVCPRLVELLGHPS--P--SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITA-G 359 (368)
Q Consensus 286 ~~~~~L~~lL~~~~--~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~-~ 359 (368)
|++..+...+.+.+ . .-+..++++|+-+..-...... .+.|.++.+|++. +.++++..|+.+-..+.. =
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666665443 2 3488899999988764332222 3456666666543 256799998888777765 3
Q ss_pred CHHHhhhc
Q 017651 360 NRDQIQVM 367 (368)
Q Consensus 360 ~~~~i~~v 367 (368)
.++++..+
T Consensus 86 ~~~~l~~l 93 (107)
T smart00802 86 KEEELGPL 93 (107)
T ss_pred CHHHHHHH
Confidence 55555443
No 387
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=43.91 E-value=41 Score=29.86 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=43.0
Q ss_pred cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--------------HHHHHHHHcCChHHHHHhhC
Q 017651 285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--------------FQTQCIITYGALPYLLGLLT 338 (368)
Q Consensus 285 ~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--------------~~~~~~~~~g~l~~l~~ll~ 338 (368)
...+..++.-|.+.+...|..|+++|..++.|.- .+...+.+.|+++.+..+|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3567788888988888899999999999997642 33445567799999999885
No 388
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=42.96 E-value=3e+02 Score=26.16 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHH---HHHHHHc-CChHH
Q 017651 216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDK---IQAVIEA-GVCPR 290 (368)
Q Consensus 216 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~---~~~~~~~-~~~~~ 290 (368)
..++++.....+..+|...|.-.......+++.+-..-. +..+++....+|++|..+...-+. .+.+.+. +.++.
T Consensus 281 ~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~ 360 (459)
T PF14764_consen 281 QAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEA 360 (459)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHH
Confidence 345666666667777765443333222333333222211 224788999999999887653322 2222211 22333
Q ss_pred HH-HhcCCC----------CcchHHHHHHHHHHhhcCChHHHH
Q 017651 291 LV-ELLGHP----------SPSVLIPALRTVGNIVTGDDFQTQ 322 (368)
Q Consensus 291 L~-~lL~~~----------~~~v~~~a~~~l~nl~~~~~~~~~ 322 (368)
+. +...+. .+.+..-.+-++..+++.+.+.+-
T Consensus 361 llyE~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~p 403 (459)
T PF14764_consen 361 LLYEVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIP 403 (459)
T ss_pred HHHHHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHhhhH
Confidence 22 222211 245556666677788777665444
No 389
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=42.77 E-value=1e+02 Score=28.33 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=58.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~ 147 (368)
+.|..+.+-|.+.|+.+.+.|+..+..+..........++-...+...|..++.+...+.|.......+-+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999887765555566677788889999999844337888777777777665
No 390
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.66 E-value=20 Score=21.11 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=25.2
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309 (368)
Q Consensus 267 ~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~ 309 (368)
+|+.+...++.. +-...+...+...|.++++.+|..|+.+
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345555444322 1222456677788888999999988765
No 391
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=40.71 E-value=2.4e+02 Score=31.36 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=79.3
Q ss_pred CcHHHHHH----hhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 017651 117 GVVPRFVE----FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192 (368)
Q Consensus 117 g~i~~Lv~----lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~ 192 (368)
+.++.++. +|.+++ +.++.-+......+...... +....++..|+..+.+.+..-...|+.+|..|+...+
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 45555553 445566 78887777777766654322 2233466778887766666556799999999997654
Q ss_pred hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHH----HHHHHHH
Q 017651 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL----TDACWAL 268 (368)
Q Consensus 193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~----~~a~~~l 268 (368)
.. ..--...+..+++.+ ..-+..-.+.+...|+.++..........-..+.-.+-+.|.+.++... .-|+..+
T Consensus 506 ~~--l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 506 SE--LQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HH--HHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 32 111122344555555 3334455666777777777554221111112233345566777776653 3344455
Q ss_pred HHhhc
Q 017651 269 SYLSD 273 (368)
Q Consensus 269 ~~l~~ 273 (368)
..++.
T Consensus 583 ~~la~ 587 (1426)
T PF14631_consen 583 KHLAA 587 (1426)
T ss_dssp HHTT-
T ss_pred HHHHH
Confidence 55554
No 392
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=40.69 E-value=72 Score=28.30 Aligned_cols=56 Identities=32% Similarity=0.423 Sum_probs=43.5
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-------hHH-------HHHHHHcCChHHHHHhcC
Q 017651 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT-------NDK-------IQAVIEAGVCPRLVELLG 296 (368)
Q Consensus 241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~-------~~~-------~~~~~~~~~~~~L~~lL~ 296 (368)
.-...+..+++-|.+++...+..++.+|.|++.|. .++ ...+.+.|+++.+..+|.
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33567888888888999999999999999999763 122 334567799999998883
No 393
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.98 E-value=2.8e+02 Score=28.77 Aligned_cols=41 Identities=24% Similarity=0.204 Sum_probs=32.9
Q ss_pred HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359 (368)
Q Consensus 319 ~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~ 359 (368)
...+.+-+...++.++.++..++++.++..|.-+|+-|+..
T Consensus 181 ~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 181 DVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 35566666678899999998877788999999999888876
No 394
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=39.22 E-value=3.5e+02 Score=25.74 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=31.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC
Q 017651 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE 129 (368)
Q Consensus 78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~ 129 (368)
.|+..|.+.....++.|...+...+........... -..+.+.|...|..+
T Consensus 130 ~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~-~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 130 LLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP-PQALSPRLLEILENP 180 (441)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc-HHHHHHHHHHHHcCC
Confidence 377788888888888888888877664321111100 123466777777744
No 395
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=38.58 E-value=12 Score=31.68 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHhhhHHHHhhhh
Q 017651 28 RREDNMVEIRKNKREESLLKKRR 50 (368)
Q Consensus 28 kr~~~~~~lRk~kr~~~l~~kr~ 50 (368)
-|+.++.++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 45567889999999999999997
No 396
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.27 E-value=1.8e+02 Score=30.20 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=60.3
Q ss_pred HHHhccccchhHHHHHHHHHHHhh---cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651 208 LAQLNERAKLSMLRNATWTLSNFC---RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 208 ~~~l~~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
..+| .+.+..++-.++-++..-. ...++.-...+....|.++..+..+|+-+...|+.+|.+++....+....=+-
T Consensus 809 ~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l 887 (1014)
T KOG4524|consen 809 IHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFL 887 (1014)
T ss_pred HHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444 6777888888887776422 22233334455778899999999999999999999999999876665544333
Q ss_pred cCChHHHHHhc
Q 017651 285 AGVCPRLVELL 295 (368)
Q Consensus 285 ~~~~~~L~~lL 295 (368)
..++|.+-.++
T Consensus 888 ~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 888 EDVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHHHH
Confidence 45666665554
No 397
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.03 E-value=77 Score=30.18 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=55.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchH-HHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhc
Q 017651 74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIE-EVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIAS 147 (368)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~-~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~ 147 (368)
+.+..|.+.+++.++.+++.|+..|.-++... ..... .+.+.++++.+|.+.+.. -+..||..++..|-....
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNC-G~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNC-GYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 46778888888888899999999777666544 44444 677899999999999876 446889888877766543
No 398
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=37.88 E-value=2.5e+02 Score=27.61 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHH-HHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 214 RAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALP-ALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 214 ~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~-~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
.+...++-.++..++.+.... |..........+. ...-+|.+.++-+...|+.++++++..
T Consensus 491 ~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 491 EPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred CCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 333445555566666655544 2222212212222 223344666788888888888888765
No 399
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=4.1e+02 Score=26.02 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC
Q 017651 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338 (368)
Q Consensus 259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~ 338 (368)
.+...++..++-++.+.+-..+.+ +..+-..+..+++.+|...-.++|-+..+++. . ++++.|-+...
T Consensus 619 ~ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ-m------~vfDtL~r~sh 686 (881)
T COG5110 619 LIESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ-M------NVFDTLERSSH 686 (881)
T ss_pred HHHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc-h------HHHHHHHHhcc
Confidence 344445444455555543222221 33444455567788888887888888777763 2 23555666666
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHH
Q 017651 339 HSHKKSIKKEACWTISNITAGNRD 362 (368)
Q Consensus 339 ~~~~~~v~~~a~~~l~nl~~~~~~ 362 (368)
+. +-++.-.+.++++-+.+|+.+
T Consensus 687 d~-dl~v~~ntIfamGLiGAGT~N 709 (881)
T COG5110 687 DG-DLNVIINTIFAMGLIGAGTLN 709 (881)
T ss_pred cc-chhHHHHHHHHhhccccCcch
Confidence 66 778888888888888887643
No 400
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.36 E-value=89 Score=23.23 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=32.2
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 244 ~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
=+++.|+.-|.+++++|...|..+|...|..+ ...+.++.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 36788999999999999999999999999775 44455544
No 401
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.83 E-value=4.6e+02 Score=26.46 Aligned_cols=76 Identities=9% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC-----ChHHHHHHHHcCChHHHHHhhCCCC---CccHHHHHHH
Q 017651 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-----DDFQTQCIITYGALPYLLGLLTHSH---KKSIKKEACW 351 (368)
Q Consensus 280 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~-----~~~~~~~~~~~g~l~~l~~ll~~~~---~~~v~~~a~~ 351 (368)
..+.+...+..+..+..+-.+..-..|+.|+..+++- ++..+...+. +++.....+|.+++ ++.--.+-|.
T Consensus 249 s~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il~np~~LsD~~nyHeFCR 327 (1082)
T KOG1410|consen 249 SSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRILENPQGLSDPANYHEFCR 327 (1082)
T ss_pred HHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCcCCCCcchHHHHHH
Confidence 3455667788888888888888889999999998852 1112222222 34445555565543 3333444454
Q ss_pred HHHHH
Q 017651 352 TISNI 356 (368)
Q Consensus 352 ~l~nl 356 (368)
.|+.+
T Consensus 328 llaRl 332 (1082)
T KOG1410|consen 328 LLARL 332 (1082)
T ss_pred HHHHH
Confidence 44443
No 402
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=36.46 E-value=1.6e+02 Score=27.44 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCCC-----CcchHHHHHHHHHHhh
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHP-----SPSVLIPALRTVGNIV 314 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~-----~~~v~~~a~~~l~nl~ 314 (368)
.++...+...++++.-.|.+.|+....| +.+..++.. -++|.+...|... +..+..-++.++.-+.
T Consensus 340 ~PLf~qia~c~sS~HFQVAEraL~~wnN------e~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~ 413 (457)
T KOG2085|consen 340 VPLFRQIARCVSSPHFQVAERALYLWNN------EYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFM 413 (457)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhh------HHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777787777665432 333333332 2455555555211 2344444444444444
Q ss_pred c
Q 017651 315 T 315 (368)
Q Consensus 315 ~ 315 (368)
.
T Consensus 414 e 414 (457)
T KOG2085|consen 414 E 414 (457)
T ss_pred H
Confidence 3
No 403
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.13 E-value=5.2e+02 Score=26.89 Aligned_cols=149 Identities=15% Similarity=0.210 Sum_probs=87.2
Q ss_pred HHhcCcHHHHHHhhc----CCC-CH---HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHH
Q 017651 113 VIQSGVVPRFVEFLM----RED-YP---QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQ 179 (368)
Q Consensus 113 ~i~~g~i~~Lv~lL~----~~~-~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~ 179 (368)
+...|++..|+.-|. .++ +| ...+.++.++..++......- ...++.++....+ .++.+...
T Consensus 454 ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~-----~~~i~rl~~~~asik~S~~n~ql~~T 528 (982)
T KOG2022|consen 454 ILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE-----STWIPRLFETSASIKLSAPNPQLLST 528 (982)
T ss_pred HHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch-----hHHHHHHHHhccccccccCChhHHHH
Confidence 444566666665553 222 22 344555666666665322211 1236777776643 47788888
Q ss_pred HHHHHHHhh---CCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC
Q 017651 180 AVWALGNVA---GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN 256 (368)
Q Consensus 180 a~~~L~nla---~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~ 256 (368)
+...+|.++ ++.|.+- .-.++.|++-| + +.+.-..+...+..||+..+..-.....+++..+-..+...
T Consensus 529 ss~~igs~s~~l~e~P~~l-----n~sl~~L~~~L-h--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 529 SSDLIGSLSNWLGEHPMYL-----NPSLPLLFQGL-H--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHhcCCccc-----CchHHHHHHHh-c--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 888887776 3444321 11456666666 2 44455566777899998764333333456666666666544
Q ss_pred C--HHHHHHHHHHHHHhhcC
Q 017651 257 D--EEVLTDACWALSYLSDG 274 (368)
Q Consensus 257 d--~~v~~~a~~~l~~l~~~ 274 (368)
+ +..+.....++||+...
T Consensus 601 ~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 601 NAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred ccCchHHHHHHHHHHHHHHh
Confidence 3 56788888899988743
No 404
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=35.68 E-value=1.6e+02 Score=27.37 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=49.4
Q ss_pred CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229 (368)
Q Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 229 (368)
+...+..++...+-.|+.++.++++.-++..-.+|.+|.+.-...|..+.. +.=..+++.+.....-.-....+..++.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCCHHHHHHHHHH
Confidence 344456677778889999999999999998888888887754444443322 2223334444222222223344455555
Q ss_pred hhcCC
Q 017651 230 FCRGK 234 (368)
Q Consensus 230 l~~~~ 234 (368)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 55444
No 405
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=35.43 E-value=3.5e+02 Score=24.75 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred chHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh-hCC----C-CHHHHHHHHH
Q 017651 109 PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LAS----P-SDDVREQAVW 182 (368)
Q Consensus 109 ~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~----~-~~~v~~~a~~ 182 (368)
..+++.+.+++..|+.+=..+..+.++.++++.+.++.+ ......+....+..++.++ +.. . ...+...-+.
T Consensus 1 ClEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~--~~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~ 78 (353)
T PF10257_consen 1 CLEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLS--QSQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVE 78 (353)
T ss_pred ChHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHH--hcccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHH
Q ss_pred HHHHhh---CCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcCCC
Q 017651 183 ALGNVA---GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSND 257 (368)
Q Consensus 183 ~L~nla---~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~~~d 257 (368)
.|..+| ..+|..-..+...+.-..-- -....... ..........++..|+.++++..
T Consensus 79 lL~~lc~~i~~~P~ll~~ff~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg 140 (353)
T PF10257_consen 79 LLNTLCSKIRKDPSLLNFFFESSPSQAQE------------------EDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEG 140 (353)
T ss_pred HHHHHHHHHHhCHHHHHHHhcCCcccccc------------------ccccCcccccCCCCCCccchHHHHHHHHhCcCc
Q ss_pred --HHHHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhc
Q 017651 258 --EEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELL 295 (368)
Q Consensus 258 --~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~L~~lL 295 (368)
..-..+++-.+..++..++...+.+++ +.+.+.+..-|
T Consensus 141 ~ig~~Are~LLll~~l~~~~~~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 141 RIGDFAREGLLLLMSLASEDPALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHcchhHHHHHHHH
No 406
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=35.14 E-value=1.4e+02 Score=21.12 Aligned_cols=58 Identities=16% Similarity=0.028 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHh
Q 017651 214 RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYL 271 (368)
Q Consensus 214 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d--~~v~~~a~~~l~~l 271 (368)
+++..++..|+..+..+|+............+...+.+.+.+++ .....-|+..|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999987543333344567777777776543 44555566666665
No 407
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=34.86 E-value=1.9e+02 Score=29.82 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
++++++..++.-=.....-....|...||.+..+.. ++.|+.+|.+. +..+...|+-+|++..
T Consensus 63 vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~-----------~~~l~~~~~~~-~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 63 VKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGYN-----------VHPLIDALDSQ-DANIAPIAAKALSHTL 125 (844)
T ss_pred HHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCCC-----------HHHHHHHHhCC-CHHHHHHHHHHHhceE
Confidence 444444444432222223345677777777776554 56677788776 7778888888887744
No 408
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=34.86 E-value=6e+02 Score=27.24 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=48.7
Q ss_pred HHHhh-cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651 79 MVAGV-WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVV 156 (368)
Q Consensus 79 l~~~l-~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 156 (368)
.+..| +..|...|++|+..+..+-+.. .-..|.+.|.+.. .-.+|..|+.+|+..+.+.++.
T Consensus 647 w~~QLr~drDVvAQ~EAI~~le~~p~~~------------s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dw---- 710 (1180)
T KOG1932|consen 647 WVYQLRQDRDVVAQMEAIESLEALPSTA------------SRSALTRTLEDERYFYRIRIAAAFALAKTANGESDW---- 710 (1180)
T ss_pred HHHHHHhcccHHHHHHHHHHHHcCCcch------------hHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccc----
Confidence 34455 5778889999999888764321 1255666666543 2589999999999999853332
Q ss_pred hhCCChHHHHHhhC
Q 017651 157 IDHGAVPIFVKLLA 170 (368)
Q Consensus 157 ~~~g~i~~L~~lL~ 170 (368)
-+.+.|+++..
T Consensus 711 ---tG~~~Li~~F~ 721 (1180)
T KOG1932|consen 711 ---TGPPHLIQFFR 721 (1180)
T ss_pred ---cChHHHHHHHH
Confidence 15666666553
No 409
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=32.97 E-value=28 Score=18.11 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhc
Q 017651 345 IKKEACWTISNITA 358 (368)
Q Consensus 345 v~~~a~~~l~nl~~ 358 (368)
||..|+|+|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999998874
No 410
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=32.86 E-value=2.1e+02 Score=21.27 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=45.0
Q ss_pred cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 017651 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (368)
Q Consensus 118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~ 191 (368)
++|.+...|.....++.+..+.-+++.++... .....+++ ..+..++........ ...++-+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-~L~~~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-PLSDEVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-CCcHHHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 47888888884444899999999999999853 33333332 233333333332222 578889999888544
No 411
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=32.50 E-value=1.1e+02 Score=25.51 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 017651 174 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 252 (368)
Q Consensus 174 ~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 252 (368)
..+...|...|..++.+++..+..+.++ ++.++..+.... ..+ ..+..++..+..+.+.......+..+..++.+
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~--~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~l 150 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYG--LGALDVLTEIFRDNPELCESISEEHIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TT--HHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCC--chHHHHHHHHHHCcHHHHHHhhHHHHHHHHHH
Confidence 4677888999999999988887776663 443333332211 111 23455666666665444444444556666777
Q ss_pred hcC
Q 017651 253 VHS 255 (368)
Q Consensus 253 L~~ 255 (368)
+..
T Consensus 151 l~~ 153 (207)
T PF01365_consen 151 LRK 153 (207)
T ss_dssp ---
T ss_pred HHH
Confidence 654
No 412
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=32.31 E-value=2e+02 Score=21.01 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335 (368)
Q Consensus 256 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ 335 (368)
+-+.+..-..|++.+.... . .++..+...+....+.-+.++++.+-.++..........+...+.+.+..
T Consensus 17 S~~~I~~lt~~a~~~~~~a-----~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA-----K-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH-----H-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 4467777788888776311 1 34556666776666778889999999998766544444455555777777
Q ss_pred hhCCCCCccHHHHHHHHH
Q 017651 336 LLTHSHKKSIKKEACWTI 353 (368)
Q Consensus 336 ll~~~~~~~v~~~a~~~l 353 (368)
..... ++.+|+....++
T Consensus 87 ~~~~~-~~~~r~kl~rl~ 103 (114)
T cd03562 87 AYEKV-DEKTRKKLERLL 103 (114)
T ss_pred HHHhC-CHHHHHHHHHHH
Confidence 77766 777776544433
No 413
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=31.84 E-value=38 Score=19.23 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCHHHhhhc
Q 017651 345 IKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 345 v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+--.+.|++.||..-.-+|++.+
T Consensus 12 il~A~~Wa~fNIg~~Al~Q~q~~ 34 (36)
T CHL00196 12 VLAAASWALFNIGRLAIQQIQRL 34 (36)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Confidence 55678999999998777777753
No 414
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.82 E-value=2.7e+02 Score=22.23 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=42.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 189 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~ 189 (368)
+...+..+..-+++.+..+.+.++.+....+.-..+... ..+|.+..+|.+..+.-...++..|..+..
T Consensus 30 ~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~--~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 30 IKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCV--DLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 444444443323366777777777655443322222222 367999999999888888888888877763
No 415
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.52 E-value=1.9e+02 Score=22.43 Aligned_cols=30 Identities=30% Similarity=0.151 Sum_probs=24.8
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLS 272 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~ 272 (368)
..+-..+..+|.++|++++..|+.||...-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 445667889999999999999999997643
No 416
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=31.44 E-value=40 Score=19.18 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCHHHhhhc
Q 017651 345 IKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 345 v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+--.+.|++.||..-.-+|++.+
T Consensus 12 il~A~gWa~fNIg~~Al~Q~~~~ 34 (36)
T PF06298_consen 12 ILPAAGWALFNIGRAALNQLQRM 34 (36)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Confidence 45678999999998777887765
No 417
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=31.37 E-value=1.2e+02 Score=18.24 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=21.7
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHH
Q 017651 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC 323 (368)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 323 (368)
.++++|.++++..+...+.+|+.+..-+++..+.
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~ 44 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQK 44 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHh
Confidence 4677887777778888888888888777765543
No 418
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=31.32 E-value=2.3e+02 Score=21.39 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HHHHHHHHc-CChHHHHHhhCCC
Q 017651 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITY-GALPYLLGLLTHS 340 (368)
Q Consensus 263 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~-g~l~~l~~ll~~~ 340 (368)
+...-|+.++..+..... .++..|.+-|++.++.|+..++++|-.++.... .....+... ..+..+...=-..
T Consensus 20 y~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~ 94 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPP 94 (122)
T ss_pred HHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 344445555554433322 346778888888889999999999999986544 333333332 2233332222111
Q ss_pred -------CCccHHHHHHHHHHHHhc
Q 017651 341 -------HKKSIKKEACWTISNITA 358 (368)
Q Consensus 341 -------~~~~v~~~a~~~l~nl~~ 358 (368)
....||.+|--++.-|.+
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHhc
Confidence 034688888887777665
No 419
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.10 E-value=6.4e+02 Score=28.22 Aligned_cols=200 Identities=11% Similarity=0.090 Sum_probs=109.2
Q ss_pred HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHH---H
Q 017651 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWA---L 184 (368)
Q Consensus 112 ~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~---L 184 (368)
.+++.|+.-.++.-+++.+ +.++..|+|++...-.+-+...+...+.-.+-.++.+.+. +++.+-..+.-. .
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D-~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~ 1512 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDD-PSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFF 1512 (1758)
T ss_pred hhhhcccHHHHhhhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHH
Confidence 6778999999999999988 9999999999887766433322333333334445554443 333332222211 2
Q ss_pred HHhhCCC-hhhH---------HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc---CCCCCChhhhhchHHHHHH
Q 017651 185 GNVAGDS-PRCR---------DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR---GKPQPPFDQVRPALPALAQ 251 (368)
Q Consensus 185 ~nla~~~-~~~~---------~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~L~~ 251 (368)
.+++.+. .... ...++..++|.+-+.+ .+...+....--|.+.-+.. ..+........+.+..+..
T Consensus 1513 ~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ff-ySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~ls 1591 (1758)
T KOG1791|consen 1513 SDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFF-YSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLS 1591 (1758)
T ss_pred HHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHH-HhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeeh
Confidence 2333222 1111 1223344566665655 33333333333344443333 3233333344566666666
Q ss_pred hhcCC--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC--CcchHHH-HHHHHHHh
Q 017651 252 LVHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIP-ALRTVGNI 313 (368)
Q Consensus 252 lL~~~--d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~-a~~~l~nl 313 (368)
+..++ +.+-+...+.+|++-+..+....+.+-..|+..-+..++.++ ++..... .+.++.++
T Consensus 1592 f~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1592 FYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred hhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 66654 344555667777777766666666666779999999999765 2333333 33344444
No 420
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.37 E-value=2.6e+02 Score=22.68 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=50.4
Q ss_pred HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651 207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (368)
Q Consensus 207 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 284 (368)
++.....+++.-+++.++.++....... .....+++.+-.++.+++..|+..+.|+|..++...++....+++
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKE-----TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3333337778888888877777766541 123456666667777778899999999999999877666544443
No 421
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=30.36 E-value=2.2e+02 Score=20.92 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=32.2
Q ss_pred CcchHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhCC
Q 017651 299 SPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYLLGLLTH 339 (368)
Q Consensus 299 ~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~l~~ll~~ 339 (368)
+..+...++.+|.-++.| +.+....+.+..+++.+..+|..
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 445667788888888888 67777888888898888888753
No 422
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.94 E-value=27 Score=24.80 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=22.9
Q ss_pred HHHHhhccc-CCCchHHHhhhHHHHHHHHH
Q 017651 10 EVRRNRYKV-AVDADEGRRRREDNMVEIRK 38 (368)
Q Consensus 10 ~~r~~~~k~-~~~~~~~r~kr~~~~~~lRk 38 (368)
.+|-.-|++ -.||.|.|+||-+.+...++
T Consensus 68 gDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 68 GDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred CCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 467888999 89999999999776654443
No 423
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=28.98 E-value=1.3e+02 Score=21.93 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=45.9
Q ss_pred CChHHHHHhcCC----CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhc-C
Q 017651 286 GVCPRLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITA-G 359 (368)
Q Consensus 286 ~~~~~L~~lL~~----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~-~ 359 (368)
|++..+-..+.+ .+...+..+++.|+.+..-...... .+.|.++..|++. ..++++..|+.+-..+.. =
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 445555555543 3456788999999998874333333 3456666666543 245788888877777665 3
Q ss_pred CHHHhh
Q 017651 360 NRDQIQ 365 (368)
Q Consensus 360 ~~~~i~ 365 (368)
+++++.
T Consensus 86 ~~~~l~ 91 (107)
T PF08064_consen 86 DEEDLG 91 (107)
T ss_pred CHHHHH
Confidence 444443
No 424
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.90 E-value=6.3e+02 Score=26.29 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=88.1
Q ss_pred HhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC-----Chh-hHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHH
Q 017651 156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGD-----SPR-CRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTL 227 (368)
Q Consensus 156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~-----~~~-~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L 227 (368)
+-+...++.++.++.. .++.++..|...|+.|+.. .|. ....+.....+..|+..+-.+ .........+..+
T Consensus 186 l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vl 265 (838)
T KOG2073|consen 186 LNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVL 265 (838)
T ss_pred HhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHH
Confidence 3345688999998874 4578888899999888866 332 555666666777777665332 2334433444433
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC---ChHHHHHhcCCCCcchHH
Q 017651 228 SNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG---VCPRLVELLGHPSPSVLI 304 (368)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~~~~L~~lL~~~~~~v~~ 304 (368)
..++... ......-.....+.+-....++.+....+.++..-. .+..+.+.... .+..-...|..+=...|.
T Consensus 266 I~ll~~~--r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rl 340 (838)
T KOG2073|consen 266 ISLLNPR--RDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERL 340 (838)
T ss_pred HHhcCcc--cccccccceeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHH
Confidence 3333221 111000000011111112224444444444443221 11111111111 111112222222345577
Q ss_pred HHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhCCC
Q 017651 305 PALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 305 ~a~~~l~nl~~~~-~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
..+..++.+...+ ....+.+...+++..+++++...
T Consensus 341 ki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 341 KIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred HHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 7778887775544 34445566667776777666544
No 425
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=28.58 E-value=4.9e+02 Score=26.60 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651 216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 274 (368)
Q Consensus 216 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~ 274 (368)
++++...++-+++....+- +........+++.|..++. -++++..||.|+..+...
T Consensus 206 npgl~~~cLdc~g~fVSWI-dInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWI-DINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSK 261 (980)
T ss_pred CchHHHHHHHHHHHHhhhh-hhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhc
Confidence 7777777777777776663 2222223567888888876 568999999999988865
No 426
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.30 E-value=7.2e+02 Score=25.83 Aligned_cols=173 Identities=14% Similarity=0.047 Sum_probs=89.8
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHH
Q 017651 169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA 248 (368)
Q Consensus 169 L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 248 (368)
|++....-+-.+...+.++-+..|.- .+++. .+-.|.+.+ ...+..++-.+..+.. -.+++-........++..
T Consensus 33 lr~~~t~eqpeavvr~~RLFek~Pfp--ifiNs-~llrLaDaF-~~Gn~llRf~V~rv~~--q~g~hln~v~n~aE~lrr 106 (970)
T KOG1988|consen 33 LRSGKTSEQPEAVVRFPRLFEKYPFP--IFINS-QLLRLADAF-PVGNNLLRFAVLRVDQ--QSGKHLNKVLNGAEFLRR 106 (970)
T ss_pred ccccccccchHHHHHHHHHHhhCCch--hhhhH-HHHHHHHHh-ccCcHHHHHHHHHHHh--hccccchhhhhhhhhhhe
Confidence 33344444455666677776666532 22222 333444444 4445555555555444 122222223333444555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-cCCCCcchHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651 249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY 327 (368)
Q Consensus 249 L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 327 (368)
+....+++|+.-+..++..++.+..--++. ...+.++.. |.+++.--.+.|+.+..+.+..+......+ .
T Consensus 107 i~~V~hsnDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~si--~ 177 (970)
T KOG1988|consen 107 IFYVDHSNDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFACSI--C 177 (970)
T ss_pred eEEeecCCCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHHHH--H
Confidence 555557889999999999998887543333 335555544 555555455677777777776443222101 1
Q ss_pred CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651 328 GALPYLLGLLTHSHKKSIKKEACWTISNITA 358 (368)
Q Consensus 328 g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 358 (368)
|-+..++..+.- ....+-..+-+++.+..
T Consensus 178 gkis~mIef~d~--~~~mkL~li~Vfs~M~c 206 (970)
T KOG1988|consen 178 GKISDMIEFLDL--PVPMKLSLIPVFSHMHC 206 (970)
T ss_pred HHHHHHhhcccC--CCCcchhHhHHHHHhcc
Confidence 223333333332 24456666666666654
No 427
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=26.98 E-value=3.7e+02 Score=22.36 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=44.3
Q ss_pred hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017651 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQV 366 (368)
Q Consensus 288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~ 366 (368)
.+.+.....+++.-.+..|+.+.-......+ ... +...+..++.++ +.-|+|...|+|..++..+++.+..
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--~~~-----l~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~V~~ 187 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTD--TDL-----LFEIILANLGSK-EFFIRKAIGWALREYSKTNPDWVRD 187 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccC--HHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHHHHH
Confidence 3556677777776666666654333332222 111 123344455566 8889999999999999988877654
No 428
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=26.67 E-value=3.1e+02 Score=21.30 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=46.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 239 (368)
..-..+..+|.+++.++|..|+.||..-- .+. +.. .=+.|..++ . +..++ ..+..+. +.........
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~----l~p--Y~d~L~~Ll-d--d~~fr-deL~~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK--DPY----LTP--YKDNLENLL-D--DKTFR-DELTTFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHH----HHh--HHHHHHHHc-C--cchHH-HHHHhhc-ccCCcCCCCH
Confidence 44567788999999999999999998742 221 111 124455555 2 22222 2222222 2222122333
Q ss_pred hhhhchHHHHHHhhc
Q 017651 240 DQVRPALPALAQLVH 254 (368)
Q Consensus 240 ~~~~~~~~~L~~lL~ 254 (368)
..-..++|.++.+|.
T Consensus 84 ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 84 EHRPELMPVVLRILY 98 (141)
T ss_pred HHHhHHHHHHHHHHH
Confidence 344678999988883
No 429
>PF14750 INTS2: Integrator complex subunit 2
Probab=26.65 E-value=8.3e+02 Score=26.33 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=64.0
Q ss_pred hcCcHHHHHHhhcCCC-C-----------HHHHHHHHHHHHHHhcCCCcchHHHhhCCC------------------hHH
Q 017651 115 QSGVVPRFVEFLMRED-Y-----------PQLQFEAAWALTNIASGTSENTKVVIDHGA------------------VPI 164 (368)
Q Consensus 115 ~~g~i~~Lv~lL~~~~-~-----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~------------------i~~ 164 (368)
+++++..|++...... + .+++..+|.-+..+.-..+...+.+.-.|. ++.
T Consensus 873 ~sa~vqiLlE~c~~~~~~~~~~~~~~~~lrei~~~iC~~iHq~FI~~p~L~klvhfQgyp~~llp~~V~~IPSmHicldf 952 (1049)
T PF14750_consen 873 ESAAVQILLEICLPTEEDKNSDDSLLSELREIQCLICSFIHQMFIADPNLAKLVHFQGYPSELLPMLVEGIPSMHICLDF 952 (1049)
T ss_pred HHHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhcCCCHHHhHHHHccCcHHHHHHHH
Confidence 5678888888874321 1 146666777777665555655555554443 233
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc---CChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ---GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235 (368)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~---~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 235 (368)
+-.+|..++.+-+-.|+...+.|+...+--+..-... +.+..++..+..+....+...++-++..+|...|
T Consensus 953 i~Ell~~~~~~kqvFaI~L~s~L~~~Y~l~~sl~~a~~~~~~~~~ll~~l~~~~~~~~~~~~lP~l~~~~~aFP 1026 (1049)
T PF14750_consen 953 IPELLAQPDLEKQVFAIQLASHLCHKYPLPKSLSVARLALNVLSTLLSVLSSDSRSKFLKPVLPALVRICEAFP 1026 (1049)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHhHHHHHHHHHCC
Confidence 3344555666667777777777776543221111111 1233333333333344555555555666655543
No 430
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=25.75 E-value=1.1e+02 Score=29.30 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=48.0
Q ss_pred HhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651 293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357 (368)
Q Consensus 293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~ 357 (368)
.+-.+.+++++..|..++++++.........+-+..+-..++.++..+ .+.+-+.++.++.-+.
T Consensus 335 ~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 335 SLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 333567899999999999999887654444344445666778888888 8888888888887665
No 431
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.45 E-value=8.2e+02 Score=26.20 Aligned_cols=134 Identities=10% Similarity=0.027 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH--HhcCChH
Q 017651 128 REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV--LSQGALI 205 (368)
Q Consensus 128 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i--~~~~~i~ 205 (368)
+-. +++|..++..|+-....-| ..+++...+.++=..|.+.+.+||..++.+|-.|...... ...+ ....+=.
T Consensus 298 DV~-~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~-~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 298 DVD-PDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDED-KDKLELFTSRFKD 372 (1048)
T ss_pred cCc-hHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHH
Confidence 334 8999999988888776433 4566667788888899999999999999999999876321 1111 1111233
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 017651 206 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 271 (368)
Q Consensus 206 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l 271 (368)
.++.+...+.+..|+...+..+..+.... . ....-+..+..++.+.++.++..|...+..=
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g-~----L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG-L----LSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc-c----cChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 44444423345555444433333322111 0 1112233455666677777777766655543
No 432
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.15 E-value=2e+02 Score=27.39 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198 (368)
Q Consensus 119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i 198 (368)
+..|++-|..+..+++--.-+..|-.++..+.+... .....|+.++......++..++.++-.+...++.+|..+
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~-----~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~li 82 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVR-----LSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLI 82 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHH-----HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445555555443366666667788888875444322 256889999999999999999999999999999999888
Q ss_pred HhcCChHHHHHHh
Q 017651 199 LSQGALIPLLAQL 211 (368)
Q Consensus 199 ~~~~~i~~l~~~l 211 (368)
++ -+..++.+.
T Consensus 83 i~--n~~efLeL~ 93 (661)
T KOG2374|consen 83 IE--NLDEFLELS 93 (661)
T ss_pred Hh--CHHHHHHHh
Confidence 87 467777775
No 433
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=24.97 E-value=96 Score=18.69 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=6.7
Q ss_pred CCCchHHHhh
Q 017651 19 AVDADEGRRR 28 (368)
Q Consensus 19 ~~~~~~~r~k 28 (368)
..||+|+|+|
T Consensus 10 k~DPeE~k~k 19 (51)
T PF15178_consen 10 KMDPEEMKRK 19 (51)
T ss_pred CCCHHHHHHH
Confidence 4677777753
No 434
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=24.87 E-value=48 Score=19.40 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCHHHhhhc
Q 017651 345 IKKEACWTISNITAGNRDQIQVM 367 (368)
Q Consensus 345 v~~~a~~~l~nl~~~~~~~i~~v 367 (368)
+--.+.|++.||..-.-+|+|.+
T Consensus 12 il~A~~Wa~fNIg~~Al~Q~q~~ 34 (40)
T PRK13240 12 ILAAAGWAVFNIGKAAREQFQRF 34 (40)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 55678999999998877787754
No 435
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=24.55 E-value=2.4e+02 Score=20.57 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=43.6
Q ss_pred CChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCC
Q 017651 160 GAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGK 234 (368)
Q Consensus 160 g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~ 234 (368)
|++..+-..+.+ .+..-+..++.+++.+..-.... +.. +.+.++..|... ..++++..++.+...+.+.-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~---i~~--~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSH---ISS--ARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHH---HHH--HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 445555555544 45677888999999887633222 222 466677776432 24578888888877777654
No 436
>PLN03205 ATR interacting protein; Provisional
Probab=24.52 E-value=5.9e+02 Score=23.82 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=86.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcC---CCcchHHHhhCCChHHHHHhhC-----CCCHHHHHHHHHHHHHhhC--
Q 017651 120 PRFVEFLMREDYPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLA-----SPSDDVREQAVWALGNVAG-- 189 (368)
Q Consensus 120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~lL~-----~~~~~v~~~a~~~L~nla~-- 189 (368)
..|+.+..-++ ..+...+++.|..+-.+ +....+.--+.+.+. |+.++. .....++-.|+.++.-|..
T Consensus 326 EaLLdLC~v~n-~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 326 EPLLDLCKAET-AVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34445545555 45666666655544321 222222222222222 222222 2345556666666655543
Q ss_pred CChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH----------HHhhcCCCCCC--------------hhhhhch
Q 017651 190 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL----------SNFCRGKPQPP--------------FDQVRPA 245 (368)
Q Consensus 190 ~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L----------~~l~~~~~~~~--------------~~~~~~~ 245 (368)
+...-|+.+....+++.+-++|+.....-++..++..| .-+|.+..... ......+
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsI 483 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKI 483 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHHH
Confidence 33334555655566778888886655566666554443 34453321110 1111234
Q ss_pred HHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChHHHHHHHH------cCChHHHHHhc
Q 017651 246 LPALAQLVHS-----NDEEVLTDACWALSYLSDGTNDKIQAVIE------AGVCPRLVELL 295 (368)
Q Consensus 246 ~~~L~~lL~~-----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~------~~~~~~L~~lL 295 (368)
+..|.+.+.+ .|-++...+...|++++.......+.++. .+++-.++++|
T Consensus 484 legLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvL 544 (652)
T PLN03205 484 FEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLL 544 (652)
T ss_pred HHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHH
Confidence 4445555532 36788899999999998765433343333 23444555554
No 437
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=23.97 E-value=4.4e+02 Score=25.92 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=20.8
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651 291 LVELLGHPSPSVLIPALRTVGNIVTGDD 318 (368)
Q Consensus 291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 318 (368)
+..+|.+.++-+...|+.+.+.++..+.
T Consensus 528 f~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 528 FHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 3444577788888888888888887654
No 438
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=23.48 E-value=6e+02 Score=23.59 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=60.8
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-----CCCcchHHHHHHHHH-HhhcC
Q 017651 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-----HPSPSVLIPALRTVG-NIVTG 316 (368)
Q Consensus 243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~-nl~~~ 316 (368)
...+..+..++...|++.+...+.++.|=...+...+..+. ..++.+.. ..+..+++..+++|. .+...
T Consensus 261 s~~~~ll~~Li~~ld~E~RY~ll~aiaNqLRYPN~HT~~Fs-----~~lL~lF~~~~~~~~~~~IqEqItRVLLERliv~ 335 (379)
T PF04054_consen 261 SPHVTLLSKLIHELDPEGRYYLLSAIANQLRYPNSHTHFFS-----CVLLNLFSSDMNDPNDEDIQEQITRVLLERLIVN 335 (379)
T ss_pred ChHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhHHHHH-----HHHHHHhcCCCCccchhhhHHHHHHHHHHHHhcC
Confidence 35667778888888999999999999999988877766543 23455554 345678888888776 33332
Q ss_pred ChHHHHHHHHcCChHHHHHhhCCC
Q 017651 317 DDFQTQCIITYGALPYLLGLLTHS 340 (368)
Q Consensus 317 ~~~~~~~~~~~g~l~~l~~ll~~~ 340 (368)
.+ .-- |++-.++++++++
T Consensus 336 rP-HPW-----GllitfiELikN~ 353 (379)
T PF04054_consen 336 RP-HPW-----GLLITFIELIKNP 353 (379)
T ss_pred CC-CCc-----cHHHHHHHHHhCc
Confidence 22 111 7788888888875
No 439
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=4.8e+02 Score=31.87 Aligned_cols=172 Identities=14% Similarity=0.078 Sum_probs=83.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--------cccchhHHHHHHHHHHHhh
Q 017651 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--------ERAKLSMLRNATWTLSNFC 231 (368)
Q Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--------~~~~~~~~~~a~~~L~~l~ 231 (368)
+.+..++.-|.+++..+++.+..+|.+++.....-...+ +.++-+++. ....-..+.-.+-++....
T Consensus 1126 ~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L-----~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~ 1200 (3550)
T KOG0889|consen 1126 NVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKL-----LEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL 1200 (3550)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHH-----HHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH
Confidence 567888888889999999999999999986542111211 222222220 1112222222222222222
Q ss_pred cCCC-CCChh-hhhchHHH--------------HHHhhcCCC----HHHHHHHHHHHHHhhcCChHHHH--HHHHcCChH
Q 017651 232 RGKP-QPPFD-QVRPALPA--------------LAQLVHSND----EEVLTDACWALSYLSDGTNDKIQ--AVIEAGVCP 289 (368)
Q Consensus 232 ~~~~-~~~~~-~~~~~~~~--------------L~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~ 289 (368)
...| .-.+. ........ +.+.....+ ...+..+..+++-.....+.... .-...+++.
T Consensus 1201 ~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~ 1280 (3550)
T KOG0889|consen 1201 SLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIA 1280 (3550)
T ss_pred HcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHH
Confidence 2211 11111 11111111 111111111 12345555555544433222111 122346777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651 290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 336 (368)
Q Consensus 290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~l 336 (368)
.+.+.|..+.+++...+..++......+...-...++.+.=|.+..+
T Consensus 1281 v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1281 VFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 88888888888888888888888877644333444444443444443
No 440
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=23.19 E-value=4.7e+02 Score=22.22 Aligned_cols=82 Identities=13% Similarity=0.020 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCc
Q 017651 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 343 (368)
Q Consensus 264 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~ 343 (368)
=...|+.++... .....+-+.+++..+..+...++. ......++.++=.+.+.... ..|-..|.++ +.
T Consensus 143 Yf~~IG~lS~~~-~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~-s~ 210 (226)
T PF14666_consen 143 YFLFIGVLSSTP-NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSG-SE 210 (226)
T ss_pred HHHHHHHHhCCh-hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcC-CH
Confidence 334566666553 444667777888888888866432 22233355555332222222 2245677787 88
Q ss_pred cHHHHHHHHHHHHh
Q 017651 344 SIKKEACWTISNIT 357 (368)
Q Consensus 344 ~v~~~a~~~l~nl~ 357 (368)
.+|..|...|..+.
T Consensus 211 ~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 211 SIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988887664
No 441
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=23.00 E-value=2.7e+02 Score=23.43 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCC-chHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 017651 78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSP-PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148 (368)
Q Consensus 78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~-~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~ 148 (368)
.+.+.|.++++..+..|+..++..++..... .-..+. .+-.-|.-.+=..|.|.+|.+.+.-|+.+...
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~--kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~ 73 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDML--KLWKGLFYCMWMSDKPLVQEELAEELASLIHS 73 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 5778899999999999999999998865222 111111 12233433343444488888888888877763
No 442
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.51 E-value=4.6e+02 Score=23.45 Aligned_cols=111 Identities=15% Similarity=0.074 Sum_probs=52.0
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-----ccc----chhHHHHHHH
Q 017651 161 AVPIFVKLLAS------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-----ERA----KLSMLRNATW 225 (368)
Q Consensus 161 ~i~~L~~lL~~------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-----~~~----~~~~~~~a~~ 225 (368)
.+|.++.++.+ .+.++....+...+.+..+..-+-+.-+. ..+|.++.++- ..+ ...++..|+.
T Consensus 231 LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h-qlmPSilTcliakklg~~p~dhe~~alRd~AA~ 309 (450)
T COG5095 231 LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH-QLMPSILTCLIAKKLGNVPDDHEHYALRDVAAD 309 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 46788887764 23344444444444444433222221111 14555555442 122 1236777778
Q ss_pred HHHHhhcCCCCCChhhhhchHHHHHHh-hcCCC-HHHHHHHHHHHHHhh
Q 017651 226 TLSNFCRGKPQPPFDQVRPALPALAQL-VHSND-EEVLTDACWALSYLS 272 (368)
Q Consensus 226 ~L~~l~~~~~~~~~~~~~~~~~~L~~l-L~~~d-~~v~~~a~~~l~~l~ 272 (368)
.+...|...+..-......+...+.+. |.... .....-|+.+++-+.
T Consensus 310 ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 310 LLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 887777765433333333344444333 33222 233444555555554
No 443
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.11 E-value=5.8e+02 Score=22.86 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=55.0
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc-----ccchhHHHHHHHHHHHhhcCCCCCChhhhh
Q 017651 169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-----RAKLSMLRNATWTLSNFCRGKPQPPFDQVR 243 (368)
Q Consensus 169 L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 243 (368)
+...+...+..|+.+|.+=++ ... .+|.++..+.. -.+.+.........+.|..++..-....+.
T Consensus 207 ~dEs~~~~r~aAl~sLr~dsG----lhQ------LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h 276 (450)
T COG5095 207 LDESDEQTRDAALESLRNDSG----LHQ------LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHHhccCcc----HHH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH
Confidence 344566777777777765322 211 35566655521 124555556666666666654322233446
Q ss_pred chHHHHHHhhc-----CCC-----HHHHHHHHHHHHHhhcCCh
Q 017651 244 PALPALAQLVH-----SND-----EEVLTDACWALSYLSDGTN 276 (368)
Q Consensus 244 ~~~~~L~~lL~-----~~d-----~~v~~~a~~~l~~l~~~~~ 276 (368)
.++|.++.++- +.+ -.++.-|+..+.+.++.-.
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~ 319 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFS 319 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhh
Confidence 77777666551 221 2377778888888886543
No 444
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.88 E-value=1.2e+03 Score=28.95 Aligned_cols=180 Identities=13% Similarity=0.051 Sum_probs=89.7
Q ss_pred cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC--C--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 017651 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH--G--AVPIFVKLLASPSDDVREQAVWALGNVAGDS 191 (368)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g--~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~ 191 (368)
.+++..++.-|.+++ +.|+..+..+|.+++..+......+.+. . .+|.+...+..-.-.++-..+.++......+
T Consensus 1125 ~~~~~~lv~eL~npN-~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1125 MNVFSPLVLELFNPN-SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC
Confidence 456778888888888 7999999999999998542222222110 0 1222222223333344444444444444332
Q ss_pred hhh-------HHHHHhcCCh-----HH---HHHHhcccc---chhHHHHHHHHHHHhhcCCCC--CChh-hhhchHHHHH
Q 017651 192 PRC-------RDLVLSQGAL-----IP---LLAQLNERA---KLSMLRNATWTLSNFCRGKPQ--PPFD-QVRPALPALA 250 (368)
Q Consensus 192 ~~~-------~~~i~~~~~i-----~~---l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~--~~~~-~~~~~~~~L~ 250 (368)
|.. .......+++ .. +........ ...++..+..++...+...+. +... ....++..+.
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Confidence 221 1111110000 00 111110000 112244445555544443322 2222 2256778888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC
Q 017651 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296 (368)
Q Consensus 251 ~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 296 (368)
+.+..+.+++...+..++......+...-...++.+.-+.+..+-+
T Consensus 1284 k~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1284 KSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred HHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhH
Confidence 8888889999999888888877664433344444444444444433
No 445
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=21.16 E-value=28 Score=34.14 Aligned_cols=119 Identities=17% Similarity=0.084 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CChHHHHHHHHcCChHHHHH
Q 017651 216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD--GTNDKIQAVIEAGVCPRLVE 293 (368)
Q Consensus 216 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~--~~~~~~~~~~~~~~~~~L~~ 293 (368)
-..+...++.+.+||+.. .....-....+-.+.+.+.+.|..+...++.++..+|. +++..+...++.......+.
T Consensus 48 ws~~~Vqal~s~~nlaqp--t~~e~S~~~~L~t~t~Gi~S~drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~ 125 (847)
T KOG2312|consen 48 WSQMQVQALQSNANLAQP--TSGESSLIKQLLTPTRGISSPDRFLIMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQ 125 (847)
T ss_pred cchhhhHhhhhhcccCCc--chhhhhHHHHHhhhccCCCCCCceeEeeccccCcccccCCCCceeehhhhchHHHHHHHh
Confidence 345667888888888872 22222222445556666778888888899999999984 34555566667777888888
Q ss_pred hcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHh
Q 017651 294 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLGL 336 (368)
Q Consensus 294 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-g~l~~l~~l 336 (368)
.+.-.+.-+....+.+|..|..-.+..+..+.+. +.+..|+.+
T Consensus 126 ~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl 169 (847)
T KOG2312|consen 126 GLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSL 169 (847)
T ss_pred ccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhcc
Confidence 8877777666677777776665555555555543 444444443
No 446
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.90 E-value=2.5e+02 Score=27.77 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHhh----CCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhhhc
Q 017651 172 PSDDVREQAVWALGNVA----GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRP 244 (368)
Q Consensus 172 ~~~~v~~~a~~~L~nla----~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~ 244 (368)
.+..+...|+.++..|. ++++.+-+.+++...+..+++.|.+.....+-...+.++.-|.++-..... ....+
T Consensus 39 ~Nr~llVEaLRsIaEILiwGDQnDssvFdFFlEkqml~yFl~Ilrq~st~~v~VQLLQTlnIlfeNirhEtslYyLlSNn 118 (864)
T KOG2219|consen 39 NNRKLLVEALRAIAEILIWGDQNDSSVFDFFLEKQMLGYFLRILRQKSTVTVCVQLLQTLNILFENIRHETSLYYLLSNN 118 (864)
T ss_pred cchhHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCceEeHHHHHHHHHHHHhccccceeeeeeccc
Confidence 45677777888888875 344556678888888899999997666545555566666666654311111 11122
Q ss_pred hHH-HHHHhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHc--CChHHH---HHhcCCCCcchHHHHHHHHHHhhc-C
Q 017651 245 ALP-ALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEA--GVCPRL---VELLGHPSPSVLIPALRTVGNIVT-G 316 (368)
Q Consensus 245 ~~~-~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~--~~~~~L---~~lL~~~~~~v~~~a~~~l~nl~~-~ 316 (368)
.+. .++.-+.-.|+++..+-+..|.-++-. ++..+..+.+. .-+|.. +++..+++..+|.++=.+..|+-. +
T Consensus 119 yVNsiI~hkFDfq~eEimaYYISFLktlS~KLN~hTihff~Nd~t~dFpLyvE~ikf~nh~EsMVRiAVRtitLNVykV~ 198 (864)
T KOG2219|consen 119 YVNSIIVHKFDFQDEEIMAYYISFLKTLSGKLNKHTIHFFLNDHTNDFPLYVEAIKFFNHPESMVRIAVRTITLNVYKVQ 198 (864)
T ss_pred ceeeeEEEeecCCcHHHHHHHHHHHHHhhcccCcceeEEeeccccccchhHHHHHHHhcChHHHHHHHHHheeeeEEEeC
Confidence 222 222333445778877777777666632 22222222221 223333 445567766666654444446644 3
Q ss_pred ChHHHHHHHHcCChHHHHHhh
Q 017651 317 DDFQTQCIITYGALPYLLGLL 337 (368)
Q Consensus 317 ~~~~~~~~~~~g~l~~l~~ll 337 (368)
++....++.+.-..+++..++
T Consensus 199 d~Sml~yi~~~ta~eYfS~Li 219 (864)
T KOG2219|consen 199 DESMLDYIRDKTATEYFSNLI 219 (864)
T ss_pred CHHHHHHHhcCcchHHHHHHH
Confidence 344445555655555555544
No 447
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.82 E-value=3.4e+02 Score=19.75 Aligned_cols=83 Identities=7% Similarity=0.067 Sum_probs=39.4
Q ss_pred cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651 215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (368)
Q Consensus 215 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 294 (368)
..+.+.....|++.+.... ..++..+.+.+....+.-+-.++..+-.++..............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 4455666666777765322 2455555555555555555555555555554432222222322223333333
Q ss_pred cCCCCcchHHHH
Q 017651 295 LGHPSPSVLIPA 306 (368)
Q Consensus 295 L~~~~~~v~~~a 306 (368)
....++.++...
T Consensus 88 ~~~~~~~~r~kl 99 (114)
T cd03562 88 YEKVDEKTRKKL 99 (114)
T ss_pred HHhCCHHHHHHH
Confidence 333444444433
No 448
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=91 Score=30.62 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHhhhHHHHhhhhh
Q 017651 27 RRREDNMVEIRKNKREESLLKKRRE 51 (368)
Q Consensus 27 ~kr~~~~~~lRk~kr~~~l~~kr~~ 51 (368)
-.|+..+.++|++||++.+..+|..
T Consensus 50 ~~rrn~akqlr~qk~~~v~e~~~~~ 74 (754)
T KOG1980|consen 50 LQRRNQAKQLRKQKREDVLENTRLL 74 (754)
T ss_pred HHHHhHHHHHHHhHHHHHHHhhhhc
Confidence 3788899999999999999998865
No 449
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=20.50 E-value=4.1e+02 Score=20.58 Aligned_cols=97 Identities=21% Similarity=0.320 Sum_probs=58.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC------
Q 017651 165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP------ 238 (368)
Q Consensus 165 L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~------ 238 (368)
+++-|..+-..++..|-++|-+ .+..+ ..++.+++.| ...+...+.+..+.+-.||.......
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~~~~e--------dL~~cIle~l-e~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--RDMEE--------DLWSCILEQL-EKENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--cccHH--------HHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 3444444556788888888888 22221 1578888999 55588888899999888886541111
Q ss_pred hhhhhchHHHHHHhhcCCCH---HHHHHHHHHHHHhh
Q 017651 239 FDQVRPALPALAQLVHSNDE---EVLTDACWALSYLS 272 (368)
Q Consensus 239 ~~~~~~~~~~L~~lL~~~d~---~v~~~a~~~l~~l~ 272 (368)
...+..-+|.++...-.++. .=+..+..+|.++.
T Consensus 82 v~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred HHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 12234555666555544432 23444555555554
No 450
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.49 E-value=1.3e+02 Score=24.15 Aligned_cols=77 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC
Q 017651 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338 (368)
Q Consensus 259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~ 338 (368)
+++..|..++..+.+...+..+ -..++..+..=|.+ +.+++..+..++.+++...+.....-++ .+++.+-..|.
T Consensus 42 elRK~ayE~lytlLd~~~~~~~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L~ 116 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRID---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHhh
Q ss_pred CC
Q 017651 339 HS 340 (368)
Q Consensus 339 ~~ 340 (368)
..
T Consensus 117 ~k 118 (169)
T PF08623_consen 117 KK 118 (169)
T ss_dssp --
T ss_pred cc
No 451
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=20.08 E-value=2.1e+02 Score=19.34 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=26.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651 75 SLPAMVAGVWSDDSSLQLEATTQFRKLLS 103 (368)
Q Consensus 75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s 103 (368)
.|++++.+..|..+..+..|+..|.+++.
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~ 68 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILY 68 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999998875
Done!