BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017652
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 90 YSWQPASCAVPR--------FDGGDF---LRRYRGKRIMFVGDSLSLNMWESLSCMIHAS 138
Y+W A+ A P+ F DF L ++ ++ GDS + +E + H +
Sbjct: 188 YNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEA 247
Query: 139 VPNAKTSFVRK--ETLSSVSFEEYGVTLLLY 167
+PN+K + ++ L++ +E+ LLL+
Sbjct: 248 IPNSKVALIKGGPHGLNATHAKEFNEALLLF 278
>pdb|2H2U|A Chain A, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
pdb|2H2U|B Chain B, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
Length = 339
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 149 KETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVLIFNSWHW 208
+E S E G LLL +P DI VG V+ + + KF + D I +
Sbjct: 242 QERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKS 301
Query: 209 WTHTGKAQPRRWDYIQDGQTLLKDMDRLEAFYKGM 243
+G+ + DG+ LL + Y+G+
Sbjct: 302 EEDSGRVASYIMAFTLDGRFLLPETKIGSVKYEGI 336
>pdb|2H2N|A Chain A, Crystal Structure Of Human Soluble Calcium-activated
Nucleotidase (scan) With Calcium Ion
pdb|2H2N|B Chain B, Crystal Structure Of Human Soluble Calcium-activated
Nucleotidase (scan) With Calcium Ion
Length = 339
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 149 KETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVLIFNSWHW 208
+E S E G LLL +P DI VG V+ + + KF + D I +
Sbjct: 242 QERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKS 301
Query: 209 WTHTGKAQPRRWDYIQDGQTLLKDMDRLEAFYKGM 243
+G+ + DG+ LL + Y+G+
Sbjct: 302 EEDSGRVASYIMAFTLDGRFLLPETKIGSVKYEGI 336
>pdb|1S18|A Chain A, Structure And Protein Design Of Human Apyrase
pdb|1S18|B Chain B, Structure And Protein Design Of Human Apyrase
pdb|1S1D|A Chain A, Structure And Protein Design Of Human Apyrase
pdb|1S1D|B Chain B, Structure And Protein Design Of Human Apyrase
Length = 331
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 149 KETLSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVLIFNSWHW 208
+E S E G LLL +P DI VG V+ + + KF + D I +
Sbjct: 234 QERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKS 293
Query: 209 WTHTGKAQPRRWDYIQDGQTLLKDMDRLEAFYKGM 243
+G+ + DG+ LL + Y+G+
Sbjct: 294 EEDSGRVASYIMAFTLDGRFLLPETKIGSVKYEGI 328
>pdb|2R8Q|A Chain A, Structure Of Lmjpdeb1 In Complex With Ibmx
pdb|2R8Q|B Chain B, Structure Of Lmjpdeb1 In Complex With Ibmx
Length = 359
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 191 AGKFWKDMDVLIFNSWHWWTHTGKAQPRRWDYIQDGQ 227
AGKF++D+ +F+ W T + +W I DG+
Sbjct: 314 AGKFFRDIVGNLFHGMQWCVDTVNSNRAKWQEILDGR 350
>pdb|3K1Q|D Chain D, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3K1Q|E Chain E, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|U Chain U, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|V Chain V, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 412
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 263 FQGISPTHYTGKEWNSRKKNCLGELEPLSGSTYPGGAPPA--ASVVNKVLSSINKPVYLL 320
F G T + G W + L L P+ P PP A N +L S N P Y+L
Sbjct: 79 FAGGQITSHQGITW---RDPVLSSLAPV-----PAIQPPPVWAVAENVLLDSNNYPTYVL 130
Query: 321 DITTLSQLRKDAH 333
+++++ + +D H
Sbjct: 131 NLSSMWPINQDVH 143
>pdb|2QK7|B Chain B, A Covalent S-f Heterodimer Of Staphylococcal
Gamma-hemolysin
Length = 307
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 12 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 61
>pdb|3B07|A Chain A, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|C Chain C, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|E Chain E, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|G Chain G, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
Length = 309
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 14 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 63
>pdb|1LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|3LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus With
Phosphocholine Bound
Length = 299
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 152 LSSVSFEEYGVTLLLYRTPYLVDIVKQKVGRVLTLNSIQAGKFWKDMDVL 201
++ VS ++ + LY+T D K K+ ++LT N I+ + KD VL
Sbjct: 4 ITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVL 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,757,273
Number of Sequences: 62578
Number of extensions: 510471
Number of successful extensions: 1423
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 12
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)