Query 017653
Match_columns 368
No_of_seqs 244 out of 1254
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 10:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2660 Locus-specific chromos 99.9 8.9E-28 1.9E-32 232.2 7.5 213 6-335 3-221 (331)
2 PF15227 zf-C3HC4_4: zinc fing 99.2 1.6E-11 3.5E-16 86.6 3.0 40 21-61 1-42 (42)
3 smart00504 Ubox Modified RING 99.1 5.2E-11 1.1E-15 89.5 5.2 62 18-85 1-62 (63)
4 TIGR00599 rad18 DNA repair pro 99.1 7.9E-11 1.7E-15 119.1 5.3 72 11-88 19-90 (397)
5 PF04564 U-box: U-box domain; 99.1 1.2E-10 2.7E-15 91.2 4.2 69 16-89 2-70 (73)
6 PLN03208 E3 ubiquitin-protein 99.0 2.1E-10 4.6E-15 105.3 4.4 64 1-65 1-78 (193)
7 PF14835 zf-RING_6: zf-RING of 99.0 1.3E-10 2.8E-15 88.7 1.7 64 13-83 2-65 (65)
8 KOG0311 Predicted E3 ubiquitin 99.0 7.8E-11 1.7E-15 115.8 -0.4 90 7-99 32-121 (381)
9 KOG0287 Postreplication repair 98.9 3E-10 6.4E-15 111.1 2.4 71 11-87 16-86 (442)
10 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.3E-09 4.9E-14 74.0 2.5 39 21-61 1-39 (39)
11 KOG0823 Predicted E3 ubiquitin 98.8 2.4E-09 5.2E-14 100.3 2.9 50 16-66 45-95 (230)
12 PF00097 zf-C3HC4: Zinc finger 98.8 5.3E-09 1.2E-13 72.4 2.8 41 21-61 1-41 (41)
13 KOG2177 Predicted E3 ubiquitin 98.7 5.6E-09 1.2E-13 96.7 3.7 72 10-89 5-76 (386)
14 COG5432 RAD18 RING-finger-cont 98.7 9.2E-09 2E-13 99.1 3.0 71 11-87 18-88 (391)
15 cd00162 RING RING-finger (Real 98.6 5.5E-08 1.2E-12 66.7 3.6 44 20-64 1-44 (45)
16 PF13920 zf-C3HC4_3: Zinc fing 98.6 4.7E-08 1E-12 70.9 3.1 46 17-65 1-47 (50)
17 PF13445 zf-RING_UBOX: RING-ty 98.5 3.8E-08 8.2E-13 69.9 2.3 37 21-59 1-43 (43)
18 KOG0317 Predicted E3 ubiquitin 98.5 5.6E-08 1.2E-12 93.7 2.9 48 16-66 237-284 (293)
19 PHA02929 N1R/p28-like protein; 98.5 9.9E-08 2.1E-12 90.8 3.9 49 16-66 172-227 (238)
20 KOG0320 Predicted E3 ubiquitin 98.5 7.1E-08 1.5E-12 87.3 2.5 48 16-66 129-178 (187)
21 PF13639 zf-RING_2: Ring finge 98.4 7.2E-08 1.6E-12 68.0 1.7 40 20-62 2-44 (44)
22 smart00184 RING Ring finger. E 98.3 5.6E-07 1.2E-11 59.5 3.0 39 21-61 1-39 (39)
23 PF14634 zf-RING_5: zinc-RING 98.3 5.6E-07 1.2E-11 63.7 3.0 41 20-63 1-44 (44)
24 COG5222 Uncharacterized conser 98.3 5.3E-07 1.2E-11 87.4 3.2 67 19-88 275-341 (427)
25 KOG2164 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 92.9 2.7 48 18-66 186-236 (513)
26 PHA02926 zinc finger-like prot 98.2 8E-07 1.7E-11 83.3 3.2 53 14-66 166-230 (242)
27 COG5574 PEX10 RING-finger-cont 98.1 1.4E-06 2.9E-11 83.4 2.2 49 16-65 213-261 (271)
28 TIGR00570 cdk7 CDK-activating 98.1 4.4E-06 9.5E-11 82.1 5.4 48 18-66 3-54 (309)
29 KOG4159 Predicted E3 ubiquitin 98.1 1.9E-06 4E-11 87.6 2.7 75 13-90 79-155 (398)
30 KOG0978 E3 ubiquitin ligase in 98.0 1.5E-06 3.3E-11 93.0 1.4 55 10-66 635-689 (698)
31 PF11789 zf-Nse: Zinc-finger o 98.0 3.2E-06 6.9E-11 63.6 2.6 44 17-60 10-53 (57)
32 PF11816 DUF3337: Domain of un 97.9 1.6E-05 3.5E-10 79.1 6.6 93 256-365 211-330 (331)
33 COG5152 Uncharacterized conser 97.9 5.2E-06 1.1E-10 76.6 2.4 68 9-85 189-256 (259)
34 PF12678 zf-rbx1: RING-H2 zinc 97.8 1E-05 2.2E-10 63.5 2.4 41 20-62 21-73 (73)
35 KOG2879 Predicted E3 ubiquitin 97.6 3.9E-05 8.5E-10 73.9 3.1 56 10-65 231-286 (298)
36 KOG0297 TNF receptor-associate 97.6 5.6E-05 1.2E-09 77.0 3.8 73 12-88 15-87 (391)
37 KOG0802 E3 ubiquitin ligase [P 97.3 8.7E-05 1.9E-09 78.5 1.8 48 14-64 287-339 (543)
38 KOG1813 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 71.0 2.4 45 18-65 241-285 (313)
39 KOG4628 Predicted E3 ubiquitin 97.2 0.00021 4.6E-09 71.4 3.1 46 19-65 230-277 (348)
40 KOG0824 Predicted E3 ubiquitin 97.0 0.00026 5.7E-09 69.1 1.7 45 19-65 8-52 (324)
41 COG5540 RING-finger-containing 97.0 0.00042 9.2E-09 67.8 2.9 46 19-65 324-371 (374)
42 KOG1002 Nucleotide excision re 97.0 0.00032 7E-09 72.8 2.0 50 16-66 534-586 (791)
43 COG5243 HRD1 HRD ubiquitin lig 96.8 0.00059 1.3E-08 68.4 2.2 56 7-65 275-344 (491)
44 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0014 3.1E-08 53.1 3.1 50 16-65 19-81 (85)
45 cd01612 APG12_C Ubiquitin-like 96.7 0.0099 2.1E-07 48.4 7.8 72 275-364 11-83 (87)
46 KOG2660 Locus-specific chromos 96.6 0.0011 2.3E-08 65.6 1.9 90 261-367 239-328 (331)
47 KOG4367 Predicted Zn-finger pr 96.5 0.0012 2.7E-08 67.3 2.0 37 15-52 1-37 (699)
48 KOG1039 Predicted E3 ubiquitin 96.5 0.0013 2.8E-08 66.0 2.0 49 17-65 160-220 (344)
49 KOG1785 Tyrosine kinase negati 96.0 0.0027 5.9E-08 64.2 1.2 47 19-66 370-416 (563)
50 cd01611 GABARAP Ubiquitin doma 95.8 0.022 4.8E-07 48.5 5.9 72 275-364 36-108 (112)
51 KOG0804 Cytoplasmic Zn-finger 95.8 0.004 8.6E-08 63.9 1.5 50 11-64 168-220 (493)
52 KOG4185 Predicted E3 ubiquitin 95.8 0.0078 1.7E-07 58.5 3.4 67 18-86 3-77 (296)
53 KOG4265 Predicted E3 ubiquitin 95.1 0.014 3.1E-07 58.4 2.8 47 16-65 288-335 (349)
54 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.026 5.7E-07 54.4 4.5 49 15-66 110-161 (260)
55 KOG1645 RING-finger-containing 95.0 0.014 3E-07 59.4 2.5 61 17-80 3-67 (463)
56 KOG0827 Predicted E3 ubiquitin 95.0 0.012 2.7E-07 59.4 2.0 48 19-66 5-56 (465)
57 KOG3800 Predicted E3 ubiquitin 95.0 0.02 4.4E-07 55.9 3.3 46 20-66 2-51 (300)
58 COG5219 Uncharacterized conser 95.0 0.011 2.4E-07 65.4 1.7 53 13-65 1464-1522(1525)
59 KOG1001 Helicase-like transcri 94.8 0.013 2.8E-07 63.8 1.5 45 19-65 455-499 (674)
60 KOG0825 PHD Zn-finger protein 94.7 0.0089 1.9E-07 64.9 -0.0 47 18-66 123-171 (1134)
61 KOG4692 Predicted E3 ubiquitin 94.5 0.021 4.5E-07 57.3 2.2 46 17-65 421-466 (489)
62 PF14570 zf-RING_4: RING/Ubox 94.4 0.038 8.2E-07 40.3 2.7 44 21-65 1-47 (48)
63 KOG4275 Predicted E3 ubiquitin 94.2 0.0083 1.8E-07 58.6 -1.4 41 18-65 300-341 (350)
64 PF04110 APG12: Ubiquitin-like 94.1 0.077 1.7E-06 43.3 4.3 59 276-335 12-71 (87)
65 KOG4172 Predicted E3 ubiquitin 94.0 0.016 3.4E-07 43.4 0.1 45 19-65 8-53 (62)
66 smart00744 RINGv The RING-vari 94.0 0.049 1.1E-06 39.6 2.7 42 20-62 1-49 (49)
67 KOG3039 Uncharacterized conser 94.0 0.047 1E-06 52.4 3.3 48 17-66 220-270 (303)
68 PF11793 FANCL_C: FANCL C-term 94.0 0.017 3.8E-07 45.0 0.3 49 18-66 2-66 (70)
69 PF14447 Prok-RING_4: Prokaryo 93.9 0.022 4.9E-07 42.5 0.8 45 16-65 5-49 (55)
70 KOG0828 Predicted E3 ubiquitin 93.7 0.033 7.2E-07 57.9 1.8 50 15-65 568-633 (636)
71 KOG3161 Predicted E3 ubiquitin 93.7 0.033 7.2E-07 59.5 1.8 61 13-79 6-72 (861)
72 KOG4739 Uncharacterized protei 93.5 0.028 6.1E-07 53.6 0.8 44 19-66 4-48 (233)
73 KOG3002 Zn finger protein [Gen 93.2 0.073 1.6E-06 52.7 3.3 66 14-90 44-109 (299)
74 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.096 2.1E-06 38.2 3.0 46 18-63 2-49 (50)
75 KOG1571 Predicted E3 ubiquitin 93.0 0.038 8.3E-07 55.4 1.0 45 15-65 302-346 (355)
76 KOG0826 Predicted E3 ubiquitin 92.7 0.064 1.4E-06 53.3 2.1 47 17-65 299-345 (357)
77 cd01798 parkin_N amino-termina 92.7 0.12 2.6E-06 39.5 3.2 45 283-329 12-56 (70)
78 COG5194 APC11 Component of SCF 92.0 0.12 2.6E-06 41.5 2.4 45 20-66 33-81 (88)
79 KOG4362 Transcriptional regula 91.9 0.057 1.2E-06 58.5 0.7 56 10-66 13-69 (684)
80 PF02991 Atg8: Autophagy prote 91.9 0.36 7.9E-06 40.6 5.3 60 275-336 28-88 (104)
81 PF11976 Rad60-SLD: Ubiquitin- 91.5 0.16 3.5E-06 38.7 2.6 48 282-330 13-60 (72)
82 smart00213 UBQ Ubiquitin homol 91.3 0.23 4.9E-06 36.3 3.1 46 283-330 13-58 (64)
83 KOG3039 Uncharacterized conser 91.2 0.14 3E-06 49.3 2.4 46 6-52 31-76 (303)
84 KOG1734 Predicted RING-contain 91.0 0.077 1.7E-06 51.6 0.5 54 10-65 217-280 (328)
85 KOG2817 Predicted E3 ubiquitin 90.8 0.17 3.7E-06 51.5 2.7 48 15-64 331-383 (394)
86 KOG1814 Predicted E3 ubiquitin 90.5 0.24 5.2E-06 50.7 3.5 49 15-63 181-237 (445)
87 COG5236 Uncharacterized conser 90.4 0.19 4.1E-06 50.5 2.6 53 11-64 54-106 (493)
88 KOG1941 Acetylcholine receptor 90.0 0.11 2.5E-06 52.7 0.7 47 17-63 364-413 (518)
89 KOG1493 Anaphase-promoting com 89.3 0.09 2E-06 41.9 -0.5 35 31-65 45-80 (84)
90 COG5175 MOT2 Transcriptional r 89.2 0.21 4.5E-06 50.1 1.8 51 14-66 11-64 (480)
91 COG5220 TFB3 Cdk activating ki 88.0 0.1 2.3E-06 49.9 -1.1 48 18-66 10-64 (314)
92 cd01807 GDX_N ubiquitin-like d 87.8 0.58 1.3E-05 36.1 3.2 45 284-330 15-59 (74)
93 cd01794 DC_UbP_C dendritic cel 87.7 0.61 1.3E-05 36.1 3.2 44 284-329 13-56 (70)
94 PTZ00380 microtubule-associate 87.4 1.4 3.1E-05 38.1 5.6 56 279-336 40-95 (121)
95 KOG2114 Vacuolar assembly/sort 87.1 0.29 6.2E-06 54.1 1.4 41 18-63 840-880 (933)
96 cd01805 RAD23_N Ubiquitin-like 87.1 0.78 1.7E-05 35.3 3.5 45 283-329 14-60 (77)
97 PF00240 ubiquitin: Ubiquitin 86.7 0.42 9.1E-06 36.0 1.8 46 283-330 9-54 (69)
98 cd01796 DDI1_N DNA damage indu 86.4 0.77 1.7E-05 35.4 3.2 44 284-329 14-58 (71)
99 cd01769 UBL Ubiquitin-like dom 85.8 1.1 2.3E-05 33.1 3.6 44 284-329 12-55 (69)
100 cd01803 Ubiquitin Ubiquitin. U 85.5 0.88 1.9E-05 34.6 3.1 44 284-329 15-58 (76)
101 cd01793 Fubi Fubi ubiquitin-li 85.4 0.9 2E-05 35.1 3.1 46 282-329 11-56 (74)
102 KOG2932 E3 ubiquitin ligase in 85.4 0.44 9.6E-06 47.3 1.6 41 20-65 92-133 (389)
103 PTZ00044 ubiquitin; Provisiona 85.2 0.98 2.1E-05 34.7 3.2 44 284-329 15-58 (76)
104 PF10367 Vps39_2: Vacuolar sor 84.6 0.32 7E-06 39.6 0.2 33 15-47 75-108 (109)
105 PHA03096 p28-like protein; Pro 84.3 0.56 1.2E-05 46.2 1.8 45 19-63 179-231 (284)
106 cd01810 ISG15_repeat2 ISG15 ub 83.8 1.2 2.7E-05 34.3 3.2 44 284-329 13-56 (74)
107 cd01809 Scythe_N Ubiquitin-lik 83.7 1.2 2.7E-05 33.4 3.2 44 284-329 15-58 (72)
108 PF05290 Baculo_IE-1: Baculovi 83.1 1.1 2.4E-05 39.4 3.0 50 17-66 79-132 (140)
109 KOG0298 DEAD box-containing he 83.1 0.33 7.2E-06 55.7 -0.4 52 12-65 1147-1198(1394)
110 PF08746 zf-RING-like: RING-li 82.5 1.4 3.1E-05 31.1 2.8 41 21-61 1-43 (43)
111 KOG3579 Predicted E3 ubiquitin 82.5 1.2 2.6E-05 43.8 3.2 68 17-89 267-342 (352)
112 cd01806 Nedd8 Nebb8-like ubiq 82.5 1.5 3.2E-05 33.4 3.2 45 284-330 15-59 (76)
113 cd01812 BAG1_N Ubiquitin-like 82.4 1.6 3.5E-05 32.8 3.3 44 284-329 14-57 (71)
114 cd01808 hPLIC_N Ubiquitin-like 81.4 1.8 4E-05 33.0 3.3 45 284-330 14-58 (71)
115 PF13764 E3_UbLigase_R4: E3 ub 80.4 1.9 4.1E-05 48.2 4.3 46 292-337 16-66 (802)
116 PF07800 DUF1644: Protein of u 79.0 2 4.4E-05 38.8 3.2 21 17-38 1-21 (162)
117 cd01815 BMSC_UbP_N Ubiquitin-l 78.9 2.3 4.9E-05 33.9 3.1 45 286-330 16-62 (75)
118 KOG1812 Predicted E3 ubiquitin 78.4 1.4 3E-05 45.1 2.3 42 18-60 146-195 (384)
119 cd01802 AN1_N ubiquitin-like d 78.2 2.3 5E-05 35.5 3.2 45 283-329 41-85 (103)
120 KOG3970 Predicted E3 ubiquitin 78.0 2.8 6.1E-05 40.1 4.0 46 19-65 51-104 (299)
121 KOG2169 Zn-finger transcriptio 77.1 2.3 4.9E-05 46.4 3.5 75 11-89 299-376 (636)
122 KOG4445 Uncharacterized conser 76.4 0.82 1.8E-05 45.3 -0.0 51 16-66 113-186 (368)
123 PF05605 zf-Di19: Drought indu 75.5 1.4 3E-05 32.2 1.0 39 17-63 1-39 (54)
124 COG5109 Uncharacterized conser 74.7 2 4.4E-05 42.8 2.2 49 14-63 332-384 (396)
125 PLN02638 cellulose synthase A 74.4 2.6 5.7E-05 48.2 3.3 64 1-66 1-70 (1079)
126 KOG2930 SCF ubiquitin ligase, 74.2 2 4.3E-05 36.3 1.7 27 36-64 80-106 (114)
127 cd01804 midnolin_N Ubiquitin-l 74.1 4 8.7E-05 32.0 3.4 44 283-329 15-58 (78)
128 cd00196 UBQ Ubiquitin-like pro 73.2 4.2 9E-05 27.4 3.0 43 283-327 11-53 (69)
129 COG3813 Uncharacterized protei 72.3 3.3 7.2E-05 32.8 2.4 42 20-66 7-52 (84)
130 KOG1100 Predicted E3 ubiquitin 69.5 2.5 5.4E-05 39.8 1.4 38 21-65 161-199 (207)
131 PF06906 DUF1272: Protein of u 67.8 5.3 0.00012 30.1 2.6 43 19-66 6-52 (57)
132 cd01763 Sumo Small ubiquitin-r 67.3 6.4 0.00014 31.5 3.2 61 259-331 11-71 (87)
133 KOG1940 Zn-finger protein [Gen 66.8 3.5 7.6E-05 40.5 1.9 43 18-63 158-204 (276)
134 cd01790 Herp_N Homocysteine-re 65.7 6.8 0.00015 31.4 3.0 48 284-332 18-66 (79)
135 PHA02825 LAP/PHD finger-like p 65.7 6.8 0.00015 35.5 3.4 49 16-66 6-59 (162)
136 PF07975 C1_4: TFIIH C1-like d 65.6 6.1 0.00013 29.2 2.5 27 34-62 24-50 (51)
137 KOG3439 Protein conjugation fa 65.0 42 0.0009 28.8 7.7 81 260-364 31-112 (116)
138 cd01792 ISG15_repeat1 ISG15 ub 64.4 10 0.00022 29.7 3.8 44 284-329 17-62 (80)
139 KOG0314 Predicted E3 ubiquitin 64.0 5 0.00011 41.9 2.5 76 10-90 211-288 (448)
140 PF07191 zinc-ribbons_6: zinc- 63.4 1 2.2E-05 35.4 -2.0 41 18-66 1-41 (70)
141 cd01800 SF3a120_C Ubiquitin-li 63.4 8.4 0.00018 29.8 3.2 45 284-330 12-56 (76)
142 PF10497 zf-4CXXC_R1: Zinc-fin 63.3 6.1 0.00013 33.2 2.5 49 18-66 7-72 (105)
143 PLN02189 cellulose synthase 62.1 5.3 0.00011 45.7 2.4 46 20-66 36-87 (1040)
144 PF05883 Baculo_RING: Baculovi 61.6 3 6.4E-05 36.8 0.3 33 18-50 26-66 (134)
145 cd01797 NIRF_N amino-terminal 60.9 8 0.00017 30.4 2.6 42 288-330 20-61 (78)
146 KOG2034 Vacuolar sorting prote 60.6 4.2 9.2E-05 45.5 1.3 39 13-51 812-851 (911)
147 KOG1815 Predicted E3 ubiquitin 60.5 4.8 0.0001 41.8 1.7 36 16-52 68-104 (444)
148 KOG1654 Microtubule-associated 60.3 14 0.0003 31.6 4.1 61 272-334 37-98 (116)
149 PF10272 Tmpp129: Putative tra 59.4 6.1 0.00013 40.2 2.1 29 37-65 311-350 (358)
150 PRK04023 DNA polymerase II lar 58.1 8.4 0.00018 44.0 3.1 65 17-86 625-694 (1121)
151 cd01791 Ubl5 UBL5 ubiquitin-li 58.1 14 0.00031 28.7 3.6 44 284-329 16-59 (73)
152 PF14569 zf-UDP: Zinc-binding 58.0 12 0.00026 30.1 3.1 48 18-66 9-62 (80)
153 KOG3899 Uncharacterized conser 57.9 5.7 0.00012 39.4 1.5 30 37-66 325-365 (381)
154 PLN02436 cellulose synthase A 55.8 6.7 0.00015 45.0 1.9 46 20-66 38-89 (1094)
155 PLN02195 cellulose synthase A 55.8 8.3 0.00018 43.9 2.6 46 19-65 7-58 (977)
156 PF10571 UPF0547: Uncharacteri 55.3 6.8 0.00015 24.9 1.1 9 20-28 2-10 (26)
157 PF03854 zf-P11: P-11 zinc fin 55.3 9.3 0.0002 28.0 1.9 41 20-65 4-45 (50)
158 cd01799 Hoil1_N Ubiquitin-like 55.1 17 0.00037 28.5 3.6 43 284-329 17-60 (75)
159 PHA02862 5L protein; Provision 54.6 12 0.00026 33.6 2.8 46 19-66 3-53 (156)
160 KOG1428 Inhibitor of type V ad 54.5 12 0.00026 44.5 3.5 48 18-65 3486-3543(3738)
161 KOG3113 Uncharacterized conser 54.3 16 0.00034 35.7 3.8 48 16-67 109-159 (293)
162 PF15616 TerY-C: TerY-C metal 52.6 8.2 0.00018 33.9 1.6 48 9-65 68-115 (131)
163 cd01813 UBP_N UBP ubiquitin pr 51.8 19 0.00042 27.9 3.4 45 284-330 14-61 (74)
164 KOG2979 Protein involved in DN 50.7 18 0.00039 35.2 3.7 46 18-63 176-221 (262)
165 PLN02915 cellulose synthase A 50.1 11 0.00023 43.3 2.4 48 18-66 15-68 (1044)
166 PLN02400 cellulose synthase 48.9 8.4 0.00018 44.3 1.3 46 20-66 38-89 (1085)
167 PF12906 RINGv: RING-variant d 48.5 12 0.00026 26.8 1.6 40 21-61 1-47 (47)
168 KOG0308 Conserved WD40 repeat- 48.0 13 0.00028 40.6 2.4 40 310-366 667-721 (735)
169 PF14353 CpXC: CpXC protein 45.2 17 0.00037 30.9 2.4 48 18-66 1-49 (128)
170 KOG1952 Transcription factor N 44.2 14 0.00031 41.3 2.1 53 13-65 186-246 (950)
171 KOG4185 Predicted E3 ubiquitin 43.8 4.2 9.2E-05 39.5 -1.8 45 19-64 208-265 (296)
172 PF06844 DUF1244: Protein of u 41.0 15 0.00033 28.6 1.2 13 40-52 11-23 (68)
173 KOG4718 Non-SMC (structural ma 39.3 17 0.00036 34.6 1.5 44 19-64 182-225 (235)
174 TIGR00622 ssl1 transcription f 39.0 22 0.00048 30.4 2.1 42 19-62 56-110 (112)
175 PF04216 FdhE: Protein involve 38.6 5.7 0.00012 38.8 -1.8 45 18-64 172-220 (290)
176 PRK14714 DNA polymerase II lar 37.8 17 0.00038 42.5 1.6 68 18-86 667-740 (1337)
177 KOG0825 PHD Zn-finger protein 37.7 17 0.00037 40.5 1.5 47 17-65 95-153 (1134)
178 PF13881 Rad60-SLD_2: Ubiquiti 37.3 20 0.00042 30.5 1.5 47 284-331 18-70 (111)
179 PF13833 EF-hand_8: EF-hand do 35.2 39 0.00085 23.7 2.6 47 287-334 1-51 (54)
180 PF14658 EF-hand_9: EF-hand do 34.4 61 0.0013 25.2 3.7 31 287-317 11-42 (66)
181 TIGR00601 rad23 UV excision re 32.8 40 0.00087 34.6 3.2 46 283-330 14-62 (378)
182 PF05502 Dynactin_p62: Dynacti 32.4 15 0.00033 38.8 0.1 52 15-66 2-63 (483)
183 KOG1812 Predicted E3 ubiquitin 31.6 22 0.00049 36.4 1.1 34 18-52 306-344 (384)
184 KOG0006 E3 ubiquitin-protein l 31.0 32 0.00069 34.7 2.0 43 284-328 18-60 (446)
185 PRK09678 DNA-binding transcrip 29.4 24 0.00052 27.9 0.7 10 19-28 2-11 (72)
186 COG0068 HypF Hydrogenase matur 29.1 30 0.00064 38.3 1.6 51 16-66 99-184 (750)
187 PF10302 DUF2407: DUF2407 ubiq 27.8 71 0.0015 26.5 3.3 44 289-332 22-66 (97)
188 PF02318 FYVE_2: FYVE-type zin 27.4 6.5 0.00014 33.4 -3.1 46 17-63 53-102 (118)
189 KOG2068 MOT2 transcription fac 26.8 46 0.001 33.6 2.3 45 19-65 250-297 (327)
190 PF04423 Rad50_zn_hook: Rad50 26.6 33 0.00071 25.0 1.0 21 57-86 22-42 (54)
191 KOG0824 Predicted E3 ubiquitin 26.2 19 0.0004 36.0 -0.5 49 15-65 102-150 (324)
192 KOG2231 Predicted E3 ubiquitin 26.1 45 0.00097 36.8 2.2 46 20-66 2-52 (669)
193 PF03671 Ufm1: Ubiquitin fold 25.9 94 0.002 24.8 3.4 55 277-332 13-67 (76)
194 PF00412 LIM: LIM domain; Int 25.5 38 0.00083 24.1 1.2 33 17-49 25-57 (58)
195 cd01795 USP48_C USP ubiquitin- 25.5 78 0.0017 26.8 3.1 38 284-323 19-56 (107)
196 KOG2807 RNA polymerase II tran 25.4 39 0.00084 34.2 1.5 43 18-62 330-374 (378)
197 PRK11088 rrmA 23S rRNA methylt 24.1 43 0.00093 32.0 1.5 23 18-41 2-27 (272)
198 cd00065 FYVE FYVE domain; Zinc 24.0 47 0.001 23.8 1.4 32 19-50 3-37 (57)
199 KOG1701 Focal adhesion adaptor 23.6 32 0.0007 35.9 0.6 59 17-89 301-359 (468)
200 PF13719 zinc_ribbon_5: zinc-r 23.6 49 0.0011 22.4 1.3 13 19-31 3-15 (37)
201 cd06406 PB1_P67 A PB1 domain i 23.4 92 0.002 25.1 3.1 52 284-337 15-68 (80)
202 COG3492 Uncharacterized protei 23.1 39 0.00084 28.1 0.8 14 39-52 41-54 (104)
203 TIGR01562 FdhE formate dehydro 22.9 21 0.00045 35.7 -0.9 45 17-63 183-232 (305)
204 PF09538 FYDLN_acid: Protein o 22.7 52 0.0011 27.9 1.6 11 55-65 26-36 (108)
205 PF14446 Prok-RING_1: Prokaryo 22.5 76 0.0017 23.8 2.2 30 18-47 5-37 (54)
206 smart00064 FYVE Protein presen 22.2 61 0.0013 24.2 1.8 33 18-50 10-45 (68)
207 PF10083 DUF2321: Uncharacteri 21.7 48 0.001 30.0 1.2 24 38-66 27-50 (158)
208 PF10235 Cript: Microtubule-as 21.6 54 0.0012 27.1 1.4 35 19-65 45-79 (90)
209 cd08315 Death_TRAILR_DR4_DR5 D 21.6 65 0.0014 26.5 1.9 49 289-340 15-63 (96)
210 PLN02248 cellulose synthase-li 21.5 73 0.0016 37.1 2.9 29 36-66 149-177 (1135)
211 TIGR00143 hypF [NiFe] hydrogen 21.3 52 0.0011 36.6 1.7 50 17-66 67-151 (711)
212 PF03833 PolC_DP2: DNA polymer 21.3 32 0.00069 38.9 0.0 44 18-66 655-703 (900)
213 smart00531 TFIIE Transcription 20.8 63 0.0014 28.4 1.8 13 54-66 122-134 (147)
214 KOG2849 Placental protein 11 [ 20.6 83 0.0018 32.3 2.8 61 282-358 208-268 (388)
215 PRK06266 transcription initiat 20.5 27 0.00058 32.1 -0.7 31 54-86 135-165 (178)
216 COG1872 Uncharacterized conser 20.3 61 0.0013 27.3 1.5 23 294-317 53-75 (102)
No 1
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=99.94 E-value=8.9e-28 Score=232.20 Aligned_cols=213 Identities=26% Similarity=0.453 Sum_probs=154.4
Q ss_pred cchhcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC-CCCCCCCccchHHHHHHH
Q 017653 6 QTLKVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG-CAPLEKLRADHNLQDLRI 84 (368)
Q Consensus 6 ~~v~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~-~~~~~~lr~n~~L~~Lve 84 (368)
+.+.+....+..+++|.+|.++|.+|+++.+|.||||++||..++.. ...||.|...++ ..++..++.|..||+|+.
T Consensus 3 ~~~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy 80 (331)
T KOG2660|consen 3 RPRRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVY 80 (331)
T ss_pred cchhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHH
Confidence 34578889999999999999999999999999999999999999965 788999999998 456999999999999999
Q ss_pred HhccccccccCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCcccCCCCCCC
Q 017653 85 KIFPSKRRNLDAPDSVSSVPLPARRKEISLSSLAISTPKSPVKSSSSGRRSKPVPKKTLVQEEYTSPIEEPIKDVEDPPE 164 (368)
Q Consensus 85 kl~p~~~~ke~~~e~~~s~~~~~krke~sLssL~v~tp~vss~~~~~grrtk~~~r~~~~~~~~~~~~~~~~~~~~d~~~ 164 (368)
+++|...+.|. +....+..+.+.++.+.+.+|.+... .+.-|..+++.+
T Consensus 81 KLVPgl~erE~----------------k~~rdFy~~~~~~d~~~~~~~~~~~~---------------~~~ek~~~t~~~ 129 (331)
T KOG2660|consen 81 KLVPGLQEREM----------------KRRRDFYKSRPLVDVPAGDTPERGHV---------------LGEEKVPDTSDE 129 (331)
T ss_pred HHcchHHHHHH----------------HHHHHHHHhCCCcccCCCCCcccccc---------------cCcccCCCchhh
Confidence 99998664333 33444555666666666666631111 011111112222
Q ss_pred CCCCc--ccccccchhccccccccccCCCCCCCCCCCCCCCCCCCccCCchhhhHhhhcCCcccCCCCcccccccCCccc
Q 017653 165 LSSEP--LCRNTQTKRQILSAAESSIQHTPDKGTEDIARPFDGKSDLWKPLNVLVEAATRPRKSLGRPKKAAVSAGLNVS 242 (368)
Q Consensus 165 ~~~~~--~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~pl~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (368)
..+.+ .-++.+++.
T Consensus 130 ~~s~~l~~~~~~~~r~---------------------------------------------------------------- 145 (331)
T KOG2660|consen 130 IASLSLEVEDFKQNRL---------------------------------------------------------------- 145 (331)
T ss_pred hhccccchhhcccchh----------------------------------------------------------------
Confidence 22211 111111111
Q ss_pred ccccccccccCCCCcCCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhC-CCchhhhhhhhcCCcC
Q 017653 243 AQAVVDTNQRFDGRFGPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLN-LISEAEVEISLRGQPV 321 (368)
Q Consensus 243 ~~~~~~~~~~~~~~~~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~-l~~e~evei~c~g~~~ 321 (368)
+.++...| -.+...++.|-++|||| ++++||.||+|||.+|++ +.+-.||||+|++++|
T Consensus 146 --------------d~~~~~~~-----~e~~~~~k~l~~~fvrc-sa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l 205 (331)
T KOG2660|consen 146 --------------DEQVSVGL-----DEGKDTLKDLVRRFLRC-SAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELL 205 (331)
T ss_pred --------------hhhhhcCC-----CcccccccccccceEec-cHHHHHHHHHHHHHHHhccccchhhheeecCCccc
Confidence 11111111 12223466677999999 999999999999999999 9999999999999999
Q ss_pred CCCccHHHHHH--HHh
Q 017653 322 LSTLELHNLIN--WWV 335 (368)
Q Consensus 322 ~~~~~l~~i~~--~w~ 335 (368)
+.++||++||+ +|.
T Consensus 206 ~~~~TLk~i~~~~~~~ 221 (331)
T KOG2660|consen 206 GDYYTLKDIAYAYRWR 221 (331)
T ss_pred cchhhhhhhhhhhccc
Confidence 99999999999 554
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.17 E-value=1.6e-11 Score=86.57 Aligned_cols=40 Identities=45% Similarity=1.051 Sum_probs=31.7
Q ss_pred CcccccccccceecCCCCCcccHHHHHHHhhccCC--CcccCC
Q 017653 21 CPLCSKLFRDATTISECLHSFCRKCIYEKITEEEI--DSCPVC 61 (368)
Q Consensus 21 CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~--~~CP~C 61 (368)
||||+++|.+||++ +|||+||..||.+++..... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999 89999999999999976543 589987
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.15 E-value=5.2e-11 Score=89.49 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=54.5
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHH
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIK 85 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvek 85 (368)
+|.||||.+++.+|+++ +|||+||+.||..|+.. ...||.|+..+ ...++.+|..|.+.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~--~~~cP~~~~~~---~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLS--HGTDPVTGQPL---THEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHH--CCCCCCCcCCC---ChhhceeCHHHHHHHHh
Confidence 47899999999999998 89999999999999975 56799999876 56788999999888764
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=7.9e-11 Score=119.07 Aligned_cols=72 Identities=22% Similarity=0.538 Sum_probs=62.6
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFP 88 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p 88 (368)
..+.++..+.|+||.++|.+|+++ +|||+||..||..++.. ...||+|+..+. ...++.|..|.+||+.|..
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~---~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSN--QPKCPLCRAEDQ---ESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhC--CCCCCCCCCccc---cccCccchHHHHHHHHHHH
Confidence 457789999999999999999988 89999999999999964 357999998763 4589999999999998753
No 5
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.06 E-value=1.2e-10 Score=91.23 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=55.8
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
-+.|.||||.++|.+||++ +|||+|++.||..|+.. ....||.|+..+ ....+.+|..|.+.++.|...
T Consensus 2 P~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~-~~~~~P~t~~~l---~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQ-NGGTDPFTRQPL---SESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCT-TSSB-TTT-SB----SGGGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHc-CCCCCCCCCCcC---CcccceECHHHHHHHHHHHHH
Confidence 3689999999999999999 89999999999999975 568899999887 456899999999999998654
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.02 E-value=2.1e-10 Score=105.34 Aligned_cols=64 Identities=27% Similarity=0.521 Sum_probs=51.9
Q ss_pred CCCcccchhcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhcc--------------CCCcccCCCccc
Q 017653 1 MATTEQTLKVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE--------------EIDSCPVCNTDL 65 (368)
Q Consensus 1 m~~~~~~v~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~--------------~~~~CP~Cr~~l 65 (368)
|..+.+....+.-...+.+.|+||++.+.+|+++ .|||.||+.||..|+... ....||+|+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 1 MEIEKDEDDTTLVDSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CCcccccccceeccCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 4555555566667777889999999999999998 899999999999997521 236899999876
No 7
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.00 E-value=1.3e-10 Score=88.67 Aligned_cols=64 Identities=27% Similarity=0.744 Sum_probs=37.1
Q ss_pred hcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHH
Q 017653 13 EKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLR 83 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lv 83 (368)
+.+++.+.|++|.++|++||.+..|.|.||+.||...+. ..||+|+.+. ...+++.|.+|.+|+
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Pa---w~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG----SECPVCHTPA---WIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT----TB-SSS--B----S-SS----HHHHHHH
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC----CCCCCcCChH---HHHHHHhhhhhhccC
Confidence 467888999999999999998889999999999977663 3499999774 567899999999875
No 8
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.8e-11 Score=115.77 Aligned_cols=90 Identities=30% Similarity=0.641 Sum_probs=79.0
Q ss_pred chhcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 7 TLKVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 7 ~v~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
-+.+....+...+.|+||+++++..+++..|+|.||..||...+.. +...||.||+.+ .....|+.|..+..|+.++
T Consensus 32 Ei~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l--~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 32 EIMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKL--VSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hheecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhc--cccccCCCCccHHHHHHHH
Confidence 3667888999999999999999999999999999999999988875 678899999876 5778999999999999999
Q ss_pred ccccccccCCCCC
Q 017653 87 FPSKRRNLDAPDS 99 (368)
Q Consensus 87 ~p~~~~ke~~~e~ 99 (368)
++....++..+..
T Consensus 109 ~~sie~~e~~q~~ 121 (381)
T KOG0311|consen 109 YPSIEEYEAPQPR 121 (381)
T ss_pred hccHHHHhccchh
Confidence 9996666665544
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.94 E-value=3e-10 Score=111.14 Aligned_cols=71 Identities=23% Similarity=0.530 Sum_probs=62.0
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~ 87 (368)
....|.+.|+|.||.++|+.|+.+ +|+|+||.-||..++.. .-.||.|...+ ....++.|..|.+|+..|-
T Consensus 16 slk~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~--~p~CP~C~~~~---~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSY--KPQCPTCCVTV---TESDLRNNRILDEIVKSLN 86 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhcc--CCCCCceeccc---chhhhhhhhHHHHHHHHHH
Confidence 567788999999999999999999 79999999999999965 45699999876 5567899999999998773
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.81 E-value=2.3e-09 Score=74.00 Aligned_cols=39 Identities=41% Similarity=1.100 Sum_probs=32.8
Q ss_pred CcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCC
Q 017653 21 CPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVC 61 (368)
Q Consensus 21 CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~C 61 (368)
|+||++.+.+|+++.+|||+||..||.+++.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999655599999999999999976 4789987
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.4e-09 Score=100.32 Aligned_cols=50 Identities=28% Similarity=0.778 Sum_probs=44.0
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccC-CCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEE-IDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~-~~~CP~Cr~~l~ 66 (368)
...|.|.||++.-++||++ .|||.||+.||++|+.... ...||+|+..+.
T Consensus 45 ~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 4679999999999999999 8999999999999998654 467899998763
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.75 E-value=5.3e-09 Score=72.42 Aligned_cols=41 Identities=37% Similarity=0.993 Sum_probs=36.8
Q ss_pred CcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCC
Q 017653 21 CPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVC 61 (368)
Q Consensus 21 CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~C 61 (368)
|+||.+.+.+|+++.+|||+||..||.+++...+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999999945599999999999999986577889987
No 13
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.6e-09 Score=96.67 Aligned_cols=72 Identities=32% Similarity=0.625 Sum_probs=60.2
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
.....+.+.+.|+||+++|.+|+++ +|||+||..|+..++. ....||.|+. ... .+.+|..+.++++.+...
T Consensus 5 ~~~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~~----~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 5 ALLEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWE--GPLSCPVCRP-PSR----NLRPNVLLANLVERLRQL 76 (386)
T ss_pred hhhhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcC--CCcCCcccCC-chh----ccCccHHHHHHHHHHHhc
Confidence 3456677899999999999999776 8999999999999886 5688999995 321 777999999999988544
No 14
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.68 E-value=9.2e-09 Score=99.10 Aligned_cols=71 Identities=23% Similarity=0.482 Sum_probs=58.3
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~ 87 (368)
....|...+.|-||..+|..|+.+ +|||+||.-||..++.. .--||+|+.+. ...-++.+..+.++++.|-
T Consensus 18 SL~~LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~--qp~CP~Cr~~~---~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 18 SLKGLDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGT--QPFCPVCREDP---CESRLRGSSGSREINESHA 88 (391)
T ss_pred chhcchhHHHhhhhhheeecceec-ccccchhHHHHHHHhcC--CCCCccccccH---HhhhcccchhHHHHHHhhh
Confidence 456778889999999999999999 89999999999999965 45599999875 4455677777777777663
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.57 E-value=5.5e-08 Score=66.74 Aligned_cols=44 Identities=36% Similarity=0.974 Sum_probs=38.2
Q ss_pred cCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 20 TCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 20 ~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
.|+||.+.+.+++.+.+|||.||..|+..|+.. +...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 599999999888888679999999999999875 46779999864
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.56 E-value=4.7e-08 Score=70.88 Aligned_cols=46 Identities=28% Similarity=0.764 Sum_probs=39.0
Q ss_pred ccccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
++..|.||++...+++.+ +|||. ||..|+.+++. ....||+||..+
T Consensus 1 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i 47 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLL-PCGHLCFCEECAERLLK--RKKKCPICRQPI 47 (50)
T ss_dssp -HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHH--TTSBBTTTTBB-
T ss_pred CcCCCccCCccCCceEEe-CCCChHHHHHHhHHhcc--cCCCCCcCChhh
Confidence 357899999999999888 89999 99999999986 567899999876
No 17
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.55 E-value=3.8e-08 Score=69.89 Aligned_cols=37 Identities=30% Similarity=0.917 Sum_probs=23.2
Q ss_pred Cccccccccc----ceecCCCCCcccHHHHHHHhhcc--CCCccc
Q 017653 21 CPLCSKLFRD----ATTISECLHSFCRKCIYEKITEE--EIDSCP 59 (368)
Q Consensus 21 CpIC~~l~~d----Pv~l~~CgHtFC~~CI~~~l~~~--~~~~CP 59 (368)
||||.+ |.+ |+++ +|||+||+.||.+++... +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 9999 799999999999999754 457787
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.6e-08 Score=93.74 Aligned_cols=48 Identities=31% Similarity=0.730 Sum_probs=41.8
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+....|.||++...+|..+ +|||.||+.||.+|.... ..||.||..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek--~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEK--AECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHccc--cCCCcccccCC
Confidence 3458999999999999998 899999999999999653 45999998763
No 19
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.48 E-value=9.9e-08 Score=90.82 Aligned_cols=49 Identities=33% Similarity=0.671 Sum_probs=38.9
Q ss_pred cccccCcccccccccc-------eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDA-------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dP-------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.....|+||++.+.++ .++.+|+|.||..||..|+.. ...||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 3468999999987653 134489999999999999854 567999998763
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.1e-08 Score=87.28 Aligned_cols=48 Identities=25% Similarity=0.826 Sum_probs=39.5
Q ss_pred cccccCccccccccc--ceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRD--ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~d--Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+..+.||||++-+.+ |+.+ .|||.||+.||...+.. ...||+|+..+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~--~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKN--TNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhcccccc-ccchhHHHHHHHHHHHh--CCCCCCcccccc
Confidence 346899999999875 5556 89999999999999954 567999997653
No 21
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.45 E-value=7.2e-08 Score=68.00 Aligned_cols=40 Identities=40% Similarity=0.960 Sum_probs=32.7
Q ss_pred cCcccccccc---cceecCCCCCcccHHHHHHHhhccCCCcccCCC
Q 017653 20 TCPLCSKLFR---DATTISECLHSFCRKCIYEKITEEEIDSCPVCN 62 (368)
Q Consensus 20 ~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr 62 (368)
.|+||++.|. ..+.+ +|||.||..||..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 5999999884 35555 79999999999999976 45899996
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.29 E-value=5.6e-07 Score=59.50 Aligned_cols=39 Identities=36% Similarity=1.092 Sum_probs=34.2
Q ss_pred CcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCC
Q 017653 21 CPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVC 61 (368)
Q Consensus 21 CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~C 61 (368)
|+||.+....++.+ +|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEe-cCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 89999998888888 8999999999999987 355679987
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.28 E-value=5.6e-07 Score=63.72 Aligned_cols=41 Identities=27% Similarity=0.788 Sum_probs=33.4
Q ss_pred cCccccccc--c-cceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 20 TCPLCSKLF--R-DATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 20 ~CpIC~~l~--~-dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
.|++|.+.+ . .|+.+ .|||+||..|+.... .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~-~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLT-SCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEc-ccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 489999988 2 45555 899999999999887 45678999983
No 24
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.26 E-value=5.3e-07 Score=87.41 Aligned_cols=67 Identities=28% Similarity=0.571 Sum_probs=57.7
Q ss_pred ccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcc
Q 017653 19 MTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFP 88 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p 88 (368)
|.||+|..++++|+.+.+|+|+||..||...+.+ ..+.||.|...- .-++.|.+|...+.-|++++.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~rkd--vlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSRKD--VLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccccc--chhhccCccHHHHHHHHHHHH
Confidence 9999999999999999899999999999988875 578999998632 356788899888888888765
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.1e-07 Score=92.90 Aligned_cols=48 Identities=29% Similarity=0.674 Sum_probs=42.2
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhcc---CCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE---EIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~---~~~~CP~Cr~~l~ 66 (368)
...||||++...-|+.+ .|||.||..||.++|... +-..||+|+..++
T Consensus 186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 78999999999999999 699999999999999753 2478999998764
No 26
>PHA02926 zinc finger-like protein; Provisional
Probab=98.21 E-value=8e-07 Score=83.26 Aligned_cols=53 Identities=25% Similarity=0.624 Sum_probs=40.0
Q ss_pred cccccccCcccccccccc--------eecCCCCCcccHHHHHHHhhcc----CCCcccCCCcccC
Q 017653 14 KLVACMTCPLCSKLFRDA--------TTISECLHSFCRKCIYEKITEE----EIDSCPVCNTDLG 66 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~dP--------v~l~~CgHtFC~~CI~~~l~~~----~~~~CP~Cr~~l~ 66 (368)
....+..|+||++...++ =.+.+|+|.||..||..|.... ....||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 344579999999886442 1344899999999999999742 1356999998764
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.4e-06 Score=83.39 Aligned_cols=49 Identities=27% Similarity=0.630 Sum_probs=41.6
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
..++.|+||.+....|..+ +|||.||..||...+.....-.||.||...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccc-cccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 4578999999999999999 899999999999855444556699999765
No 28
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=4.4e-06 Score=82.13 Aligned_cols=48 Identities=29% Similarity=0.761 Sum_probs=36.9
Q ss_pred cccCcccccc-cccce---ecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKL-FRDAT---TISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l-~~dPv---~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...||+|... +..|- .+.+|||.||..|+...+.. +...||.|+..+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccc
Confidence 4689999872 33443 33379999999999998864 5678999998774
No 29
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-06 Score=87.65 Aligned_cols=75 Identities=27% Similarity=0.575 Sum_probs=58.4
Q ss_pred hcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCC-CCCCc-cchHHHHHHHHhcccc
Q 017653 13 EKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAP-LEKLR-ADHNLQDLRIKIFPSK 90 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~-~~~lr-~n~~L~~Lvekl~p~~ 90 (368)
+.+..+|.|.||...|..||++ +|||+||..||.+.+. ....||.|+..+.... ..... +++.+..++.+|++..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLD--QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred ccccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhc--cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4457899999999999999999 9999999999999774 5678999998875221 22222 3666778888888763
No 30
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.5e-06 Score=93.01 Aligned_cols=55 Identities=25% Similarity=0.745 Sum_probs=48.1
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.....+..-++||+|..-+++.|.+ .|||.||..|+...+.. ....||.|+..|+
T Consensus 635 EElk~yK~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 635 EELKEYKELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYET-RQRKCPKCNAAFG 689 (698)
T ss_pred HHHHHHHhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHH-hcCCCCCCCCCCC
Confidence 3566777889999999999999888 79999999999998865 5688999999885
No 31
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.03 E-value=3.2e-06 Score=63.56 Aligned_cols=44 Identities=27% Similarity=0.643 Sum_probs=33.4
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccC
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPV 60 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~ 60 (368)
-.++|||.+..|.+||....|||+|.+..|.+++...+...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46999999999999999878999999999999996667789998
No 32
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=97.93 E-value=1.6e-05 Score=79.12 Aligned_cols=93 Identities=28% Similarity=0.332 Sum_probs=68.6
Q ss_pred CcCCeEEEEEecCCCCCC-----------CCCCCCccceeeee-CCCccHHHHHHHHHHHh--------------CCCch
Q 017653 256 RFGPIWFSLVASDEQEGD-----------EPLPQISSCYLRVK-DGRLPVSFIKRYIVKKL--------------NLISE 309 (368)
Q Consensus 256 ~~~~iwf~l~~~~~q~~~-----------~~lp~i~~~ylr~~-~~~~~v~~l~Kyl~~KL--------------~l~~e 309 (368)
...-|.|.|+...+..-+ -.+|.++....|.- ..-+.|.-|.-|++.|| .+..+
T Consensus 211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~ 290 (331)
T PF11816_consen 211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE 290 (331)
T ss_pred CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence 345599999977622211 12444444444441 23356788999999999 45678
Q ss_pred hhhhhhhcCCcCCCCccHHHHHH-HHhhcCCCccceecccCCCccceEEEEeeecCC
Q 017653 310 AEVEISLRGQPVLSTLELHNLIN-WWVQTSSASERIQTVVGSSAKDFVMVLSYGRKA 365 (368)
Q Consensus 310 ~evei~c~g~~~~~~~~l~~i~~-~w~~~~~~~~~~~~~~~~~~~~~~m~l~y~r~~ 365 (368)
.-+||+|+||.|.+.|||.-|+- +|.+.+ =|||+|+|+.
T Consensus 291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~-----------------di~L~YR~k~ 330 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTLATVRTFIWKSSG-----------------DIVLHYRRKG 330 (331)
T ss_pred ceEEEEeCCeEcCCcCCHHHHHHhhccCCC-----------------eEEEEEEecC
Confidence 89999999999999999999999 897766 5899999975
No 33
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.92 E-value=5.2e-06 Score=76.55 Aligned_cols=68 Identities=29% Similarity=0.559 Sum_probs=51.7
Q ss_pred hcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHH
Q 017653 9 KVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIK 85 (368)
Q Consensus 9 ~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvek 85 (368)
..+.+.| .|.|-||...|..||++ .|||.||..|....+.. ...|-+|.... ...+.+...|+.|+.+
T Consensus 189 ~~~~e~I--PF~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t----~G~f~V~~d~~kmL~~ 256 (259)
T COG5152 189 SGPGEKI--PFLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQK--GDECGVCGKAT----YGRFWVVSDLQKMLNK 256 (259)
T ss_pred cCCCCCC--ceeehhchhhccchhhh-hcchhHHHHHHHHHhcc--CCcceecchhh----ccceeHHhhHHHHHhh
Confidence 3344444 48999999999999999 89999999999887754 45699998753 3455666677776654
No 34
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.83 E-value=1e-05 Score=63.54 Aligned_cols=41 Identities=24% Similarity=0.705 Sum_probs=32.0
Q ss_pred cCcccccccc------------cceecCCCCCcccHHHHHHHhhccCCCcccCCC
Q 017653 20 TCPLCSKLFR------------DATTISECLHSFCRKCIYEKITEEEIDSCPVCN 62 (368)
Q Consensus 20 ~CpIC~~l~~------------dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr 62 (368)
.|+||++.|. -++.+..|||.|...||.+|+.. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence 4999999883 34455579999999999999964 45899997
No 35
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=3.9e-05 Score=73.87 Aligned_cols=56 Identities=21% Similarity=0.520 Sum_probs=47.4
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.....-....+||+|.+.-..|.+..+|||.||.-||........++.||.|+...
T Consensus 231 ~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 231 FSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 33445556789999999999999997799999999999888765679999999765
No 36
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.56 E-value=5.6e-05 Score=77.03 Aligned_cols=73 Identities=29% Similarity=0.669 Sum_probs=55.6
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcc
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFP 88 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p 88 (368)
...+++.+.|++|...+.+|+.+..|||.||..|+..++.. ...||.|+..+. ....+.....+...+.++..
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~--~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELT--QAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccc--hhhccCchHHHHHHHHhccc
Confidence 33478889999999999999985589999999999999965 678999987763 33344445555666665543
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=8.7e-05 Score=78.54 Aligned_cols=48 Identities=21% Similarity=0.532 Sum_probs=41.1
Q ss_pred cccccccCccccccccc-----ceecCCCCCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 14 KLVACMTCPLCSKLFRD-----ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~d-----Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
.......|+||.+.+.. |..+ +|+|.||..|+..|+.. ...||.||..
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er--~qtCP~CR~~ 339 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFER--QQTCPTCRTV 339 (543)
T ss_pred hhhcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHH--hCcCCcchhh
Confidence 44457899999999988 7777 89999999999999965 5679999973
No 38
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00013 Score=71.02 Aligned_cols=45 Identities=27% Similarity=0.679 Sum_probs=39.0
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.|.|-||...|.+||++ .|+|+||..|....+. ....|.+|....
T Consensus 241 Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~q--k~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQ--KGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccchhh-cCCceeehhhhccccc--cCCcceeccccc
Confidence 47799999999999999 8999999999887774 346799999765
No 39
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00021 Score=71.44 Aligned_cols=46 Identities=33% Similarity=0.715 Sum_probs=38.0
Q ss_pred ccCccccccccc--ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFRD--ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~d--Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.+|.||++.|.+ -+.+.+|.|.|-..||..|+... ...||+|+.++
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcC
Confidence 499999999963 45555999999999999999763 45699999765
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00026 Score=69.09 Aligned_cols=45 Identities=24% Similarity=0.660 Sum_probs=39.4
Q ss_pred ccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
-.|+||+.-..-|+.+ .|+|-||.-||...+.. +...|++||.++
T Consensus 8 ~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~n-dk~~CavCR~pi 52 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNL-YCFHKFCYICIKGSYKN-DKKTCAVCRFPI 52 (324)
T ss_pred CcceeeeccCCcCccc-cccchhhhhhhcchhhc-CCCCCceecCCC
Confidence 4699999999999888 89999999999987754 556799999886
No 41
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00042 Score=67.79 Aligned_cols=46 Identities=28% Similarity=0.683 Sum_probs=37.6
Q ss_pred ccCcccccccc--cceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFR--DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~--dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
..|.||+.-|. +-++..+|.|.|...|+..|+.. -...||+||..+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhh-hcccCCccCCCC
Confidence 57999998774 33444599999999999999975 457899999875
No 42
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.99 E-value=0.00032 Score=72.84 Aligned_cols=50 Identities=34% Similarity=0.737 Sum_probs=42.5
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhc---cCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITE---EEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~---~~~~~CP~Cr~~l~ 66 (368)
.....|.+|.+.-.+++.. .|.|+||+.||.+|+.. ..+..||+|.+.+.
T Consensus 534 k~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3468999999999999998 89999999999887753 23578999998875
No 43
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00059 Score=68.41 Aligned_cols=56 Identities=21% Similarity=0.552 Sum_probs=42.4
Q ss_pred chhcchhcc-cccccCcccccc-ccc------------ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 7 TLKVNREKL-VACMTCPLCSKL-FRD------------ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 7 ~v~v~~~~l-~e~L~CpIC~~l-~~d------------Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.+++..+.+ .++-+|.||.+- +.. |..+ +|||.|-..|+..|+.. .-.||+||.++
T Consensus 275 ~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ER--qQTCPICr~p~ 344 (491)
T COG5243 275 YPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLER--QQTCPICRRPV 344 (491)
T ss_pred cchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHh--ccCCCcccCcc
Confidence 344444444 356799999976 443 4788 89999999999999964 45699999875
No 44
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.69 E-value=0.0014 Score=53.08 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=38.4
Q ss_pred cccccCcccccccc-----------c-ceecCCCCCcccHHHHHHHhhcc-CCCcccCCCccc
Q 017653 16 VACMTCPLCSKLFR-----------D-ATTISECLHSFCRKCIYEKITEE-EIDSCPVCNTDL 65 (368)
Q Consensus 16 ~e~L~CpIC~~l~~-----------d-Pv~l~~CgHtFC~~CI~~~l~~~-~~~~CP~Cr~~l 65 (368)
.++-.|.||...|. + |+++-.|+|.|...||.+|+... ....||.||+..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 34566777776664 2 66666899999999999999864 347899999765
No 45
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=96.66 E-value=0.0099 Score=48.41 Aligned_cols=72 Identities=11% Similarity=0.235 Sum_probs=58.3
Q ss_pred CCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCC-cCCCCccHHHHHHHHhhcCCCccceecccCCCcc
Q 017653 275 PLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQ-PVLSTLELHNLINWWVQTSSASERIQTVVGSSAK 353 (368)
Q Consensus 275 ~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~-~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~ 353 (368)
.+|+|.+.=.-| ++.++|+.+.+||+++|+|.++.-|=+.+++. +..++.+|.+|++.. + .
T Consensus 11 ~~p~l~k~kflv-~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~----------------~ 72 (87)
T cd01612 11 SAPILKQKVFKI-SATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-G----------------T 72 (87)
T ss_pred CCccccccEEEe-CCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-C----------------C
Confidence 378998854448 99999999999999999999988899988875 444567888888876 2 2
Q ss_pred ceEEEEeeecC
Q 017653 354 DFVMVLSYGRK 364 (368)
Q Consensus 354 ~~~m~l~y~r~ 364 (368)
|..+.++|+..
T Consensus 73 dGfLyi~Ys~~ 83 (87)
T cd01612 73 NGELIVSYCKT 83 (87)
T ss_pred CCEEEEEEeCc
Confidence 66889999864
No 46
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.56 E-value=0.0011 Score=65.59 Aligned_cols=90 Identities=11% Similarity=-0.014 Sum_probs=79.6
Q ss_pred EEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCC
Q 017653 261 WFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSA 340 (368)
Q Consensus 261 wf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~ 340 (368)
||.|. +|.++..++++.++|.++.+|+.++. |++|++.++++..+.+ ++ .|..+|+-+.++|..+.+
T Consensus 239 ~~~L~---~~~~~~s~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~t~~~-~~-------~pt~~~~~~~~~~~~~~~- 305 (331)
T KOG2660|consen 239 RLKLT---REAEEESLAGEFASLSVSDKANSPAA-IPATSSPEPSPSTPPR-SE-------HPTVPLPSSTLRGSYTDA- 305 (331)
T ss_pred cceee---ccccccccccchhhhhccccCCCccc-cccccccccCcCCCcc-CC-------CCcccCchhhhccccccc-
Confidence 99999 88888889999999999999999999 9999999999888777 55 888999999999988873
Q ss_pred ccceecccCCCccceEEEEeeecCCCC
Q 017653 341 SERIQTVVGSSAKDFVMVLSYGRKAQP 367 (368)
Q Consensus 341 ~~~~~~~~~~~~~~~~m~l~y~r~~~~ 367 (368)
... .++|++.|+|++.|.++..+
T Consensus 306 ~~~----~~~s~~~~~~~~~~~~~~~~ 328 (331)
T KOG2660|consen 306 EGF----NRKSSGHRPRKKIVSGSSKP 328 (331)
T ss_pred ccc----cCcccccCCceeeecCCCCC
Confidence 222 88999999999999998765
No 47
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.52 E-value=0.0012 Score=67.30 Aligned_cols=37 Identities=22% Similarity=0.835 Sum_probs=33.3
Q ss_pred ccccccCcccccccccceecCCCCCcccHHHHHHHhhc
Q 017653 15 LVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITE 52 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~ 52 (368)
+++++.||||..+|++|+.+ +|+|..|+.|....+..
T Consensus 1 meeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIIL-PCSHNLCQACARNILVQ 37 (699)
T ss_pred CcccccCceehhhccCceEe-ecccHHHHHHHHhhccc
Confidence 46889999999999999999 89999999998876654
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0013 Score=66.04 Aligned_cols=49 Identities=27% Similarity=0.673 Sum_probs=39.8
Q ss_pred ccccCcccccccccce-----e--cCCCCCcccHHHHHHHhhccC-----CCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDAT-----T--ISECLHSFCRKCIYEKITEEE-----IDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv-----~--l~~CgHtFC~~CI~~~l~~~~-----~~~CP~Cr~~l 65 (368)
.+..|-||++...+.. . ++.|-|.||..||..|..... ...||.||...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 3789999999888766 2 347999999999999985544 58899999764
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.96 E-value=0.0027 Score=64.23 Aligned_cols=47 Identities=23% Similarity=0.666 Sum_probs=38.9
Q ss_pred ccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 19 MTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
-.|.||-+-=++-.. -+|||..|..|+..|....+...||.||..+.
T Consensus 370 eLCKICaendKdvkI-EPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAENDKDVKI-EPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccCCCccc-ccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 368899888777544 48999999999999997666788999998764
No 50
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=95.81 E-value=0.022 Score=48.52 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=60.4
Q ss_pred CCCCCcc-ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCcc
Q 017653 275 PLPQISS-CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSAK 353 (368)
Q Consensus 275 ~lp~i~~-~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~ 353 (368)
.+|.|.+ +|| | ++.++|..+..+|.++|+|.++.-+=+.|++....++.+|.+|.+.... .
T Consensus 36 ~~p~l~k~Kfl-V-p~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd----------------~ 97 (112)
T cd01611 36 DLPDLDKKKYL-V-PSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD----------------E 97 (112)
T ss_pred CcccccCceEE-e-cCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC----------------C
Confidence 4677776 687 8 9999999999999999999998889999999766778888888887643 2
Q ss_pred ceEEEEeeecC
Q 017653 354 DFVMVLSYGRK 364 (368)
Q Consensus 354 ~~~m~l~y~r~ 364 (368)
|..+.|+|+..
T Consensus 98 DGfLyl~Ys~~ 108 (112)
T cd01611 98 DGFLYMTYSSE 108 (112)
T ss_pred CCEEEEEEecc
Confidence 66899999864
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.80 E-value=0.004 Score=63.88 Aligned_cols=50 Identities=32% Similarity=0.600 Sum_probs=39.1
Q ss_pred chhcccccccCcccccccccce---ecCCCCCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 11 NREKLVACMTCPLCSKLFRDAT---TISECLHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv---~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
+...+-+--+||+|++-+-.-+ .+..|.|+|-..|+..|.. ..||+||--
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~ 220 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYC 220 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhh
Confidence 3444556779999999997654 4458999999999998873 469999953
No 52
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0078 Score=58.54 Aligned_cols=67 Identities=16% Similarity=0.478 Sum_probs=52.4
Q ss_pred cccCcccccccc------cceecCCCCCcccHHHHHHHhhccCCCcccCCCcc--cCCCCCCCCccchHHHHHHHHh
Q 017653 18 CMTCPLCSKLFR------DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTD--LGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 18 ~L~CpIC~~l~~------dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~--l~~~~~~~lr~n~~L~~Lvekl 86 (368)
.+.|-||.+.|. .|..+ .|||+||..|+...+.. ....||.||.. +.......+..|..+..+++.+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 467999988774 48888 69999999999887764 56678999988 3344567778888888877766
No 53
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.014 Score=58.38 Aligned_cols=47 Identities=23% Similarity=0.631 Sum_probs=38.6
Q ss_pred cccccCcccccccccceecCCCCCcc-cHHHHHHHhhccCCCcccCCCccc
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSF-CRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtF-C~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.--.|-||+.-.++-+++ +|.|.- |..|..... -....||+||.++
T Consensus 288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi 335 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLR--YQTNNCPICRQPI 335 (349)
T ss_pred cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHH--HhhcCCCccccch
Confidence 4467899999999999999 899964 999987655 2356699999876
No 54
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.09 E-value=0.026 Score=54.43 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=39.8
Q ss_pred ccccccCcccccccc---cceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 15 LVACMTCPLCSKLFR---DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 15 l~e~L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
-...|.|||....|. .-|.+.+|||.|+..+|...- ....||+|..++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence 467899999998884 356677999999999998763 3456999999985
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.014 Score=59.35 Aligned_cols=61 Identities=26% Similarity=0.602 Sum_probs=45.3
Q ss_pred ccccCcccccccccc----eecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHH
Q 017653 17 ACMTCPLCSKLFRDA----TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQ 80 (368)
Q Consensus 17 e~L~CpIC~~l~~dP----v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~ 80 (368)
...+||||++-+.-| +....|||.|=..||++|+.......||.|... ...+.+++-+.+.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k---atkr~i~~e~alR 67 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK---ATKRQIRPEYALR 67 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh---hHHHHHHHHHHHH
Confidence 457999999988655 233479999999999999975456899999854 3445555555543
No 56
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.012 Score=59.41 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=35.7
Q ss_pred ccCcccccccccc---eecCCCCCcccHHHHHHHhhccCC-CcccCCCcccC
Q 017653 19 MTCPLCSKLFRDA---TTISECLHSFCRKCIYEKITEEEI-DSCPVCNTDLG 66 (368)
Q Consensus 19 L~CpIC~~l~~dP---v~l~~CgHtFC~~CI~~~l~~~~~-~~CP~Cr~~l~ 66 (368)
-.|.||.+++-.- -.+..|||+|-..|+..|+....+ ..||+|+..++
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 4699997766421 122249999999999999986555 58999996654
No 57
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.02 Score=55.92 Aligned_cols=46 Identities=28% Similarity=0.710 Sum_probs=35.3
Q ss_pred cCccccc-ccccc---eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 20 TCPLCSK-LFRDA---TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~-l~~dP---v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.||+|.. .+.+| ..+.+|+|+.|.+|+...+.. +...||.|...+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhh
Confidence 4999964 44444 223489999999999999875 7789999998763
No 58
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.98 E-value=0.011 Score=65.36 Aligned_cols=53 Identities=21% Similarity=0.690 Sum_probs=41.3
Q ss_pred hcccccccCcccccccc-----cce-ecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 13 EKLVACMTCPLCSKLFR-----DAT-TISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~-----dPv-~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
..+...-.|+||..++. -|- +...|.|-|...|++.|+...+...||.||..+
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 34455668999998875 121 223599999999999999988889999999765
No 59
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.75 E-value=0.013 Score=63.77 Aligned_cols=45 Identities=29% Similarity=0.765 Sum_probs=38.6
Q ss_pred ccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.|++|.+ ...++.+ .|+|.||..|+...+.......||.|+..+
T Consensus 455 ~~c~ic~~-~~~~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceee-cccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 89999999 6667666 899999999999988766666899999765
No 60
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.66 E-value=0.0089 Score=64.91 Aligned_cols=47 Identities=28% Similarity=0.554 Sum_probs=36.0
Q ss_pred cccCcccccccccceec--CCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTI--SECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l--~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.-.||+|+.-+.+-... ..|+|.||..||..|-.. ...||+|+..|.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh--cccCchhhhhhh
Confidence 34788998766653322 369999999999998854 567999999876
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.021 Score=57.27 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=39.5
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
++-.||||.---..+|.. +|+|.-|..||.+++- +.+.|-.|+..+
T Consensus 421 Ed~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlm--N~k~CFfCktTv 466 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLM--NCKRCFFCKTTV 466 (489)
T ss_pred ccccCcceecccchhhcc-CCCCchHHHHHHHHHh--cCCeeeEeccee
Confidence 467899999888889888 8999999999999884 567899998654
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.40 E-value=0.038 Score=40.26 Aligned_cols=44 Identities=32% Similarity=0.729 Sum_probs=21.6
Q ss_pred Ccccccccc--c-ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 21 CPLCSKLFR--D-ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 21 CpIC~~l~~--d-Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
||+|.+.+. + -+.-=+||+.+|+.|....+.+ ....||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 788887762 1 1112268999999999988863 567899999764
No 63
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.0083 Score=58.65 Aligned_cols=41 Identities=32% Similarity=0.759 Sum_probs=33.9
Q ss_pred cccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCccc
Q 017653 18 CMTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
...|.||.+..++.+.+ +|||. -|..|-.++ ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm------~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRM------NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEe-ecCcEEeehhhcccc------ccCchHHHHH
Confidence 67899999999999999 89994 498886433 3599999765
No 64
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=94.09 E-value=0.077 Score=43.33 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=39.3
Q ss_pred CCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCC-cCCCCccHHHHHHHHh
Q 017653 276 LPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQ-PVLSTLELHNLINWWV 335 (368)
Q Consensus 276 lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~-~~~~~~~l~~i~~~w~ 335 (368)
-|+|..+-..| +++-++.+|-+||+++|++.+...|-+.++.- .=.|..++.+|++++.
T Consensus 12 aPilk~~k~kI-~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~ 71 (87)
T PF04110_consen 12 APILKQKKFKI-SASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG 71 (87)
T ss_dssp ----S--EEEE-ETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH-
T ss_pred CccccCcEEEE-CCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC
Confidence 67888899999 99999999999999999998877888877663 3367889999999885
No 65
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.016 Score=43.38 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=37.0
Q ss_pred ccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
-.|-||.+--.+.|.- .|||. .|..|-.+.+.. ....||+||.++
T Consensus 8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKA-LHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHc-cCCcCcchhhHH
Confidence 5699999999998877 79995 599998887764 567899999765
No 66
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.03 E-value=0.049 Score=39.60 Aligned_cols=42 Identities=21% Similarity=0.542 Sum_probs=33.3
Q ss_pred cCccccc--ccccceecCCCC-----CcccHHHHHHHhhccCCCcccCCC
Q 017653 20 TCPLCSK--LFRDATTISECL-----HSFCRKCIYEKITEEEIDSCPVCN 62 (368)
Q Consensus 20 ~CpIC~~--l~~dPv~l~~Cg-----HtFC~~CI~~~l~~~~~~~CP~Cr 62 (368)
.|-||++ .-.++... +|. |.|-..|+.+|+...+...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 33467666 785 778999999999887778999995
No 67
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.047 Score=52.41 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=39.9
Q ss_pred ccccCcccccccccc---eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 17 ACMTCPLCSKLFRDA---TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 17 e~L~CpIC~~l~~dP---v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+.||+|.+.+.+. ..+.+|||.||..|.+..+. ....||+|..++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir--~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR--KDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc--ccccccCCCCcCc
Confidence 678999999999874 34558999999999999885 4567999998764
No 68
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.99 E-value=0.017 Score=44.96 Aligned_cols=49 Identities=20% Similarity=0.490 Sum_probs=23.3
Q ss_pred cccCcccccccc----cceec---CCCCCcccHHHHHHHhhccCC---------CcccCCCcccC
Q 017653 18 CMTCPLCSKLFR----DATTI---SECLHSFCRKCIYEKITEEEI---------DSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~----dPv~l---~~CgHtFC~~CI~~~l~~~~~---------~~CP~Cr~~l~ 66 (368)
++.|+||...+. .|... ..|++.|-..||.+|+..... -.||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999998754 23332 158889999999999975311 35999998763
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.94 E-value=0.022 Score=42.51 Aligned_cols=45 Identities=24% Similarity=0.655 Sum_probs=35.3
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.....|-.|...-...+++ +|||..|..|+... ....||.|..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~----rYngCPfC~~~~ 49 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVL-PCGHLICDNCFPGE----RYNGCPFCGTPF 49 (55)
T ss_pred ccceeEEEccccccccccc-cccceeeccccChh----hccCCCCCCCcc
Confidence 4566788888887778888 89999999997542 345699999876
No 70
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.033 Score=57.93 Aligned_cols=50 Identities=24% Similarity=0.570 Sum_probs=36.9
Q ss_pred ccccccCcccccccc----------------cceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 15 LVACMTCPLCSKLFR----------------DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 15 l~e~L~CpIC~~l~~----------------dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.+..--|+||...+. .-.++++|.|.|-+.|+.+|+.. -...||+||.++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pL 633 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPL 633 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCC
Confidence 445567999986442 11344599999999999999963 345799999876
No 71
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.033 Score=59.52 Aligned_cols=61 Identities=26% Similarity=0.573 Sum_probs=40.9
Q ss_pred hcccccccCcccccccc----cceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC--CCCCCCCccchHH
Q 017653 13 EKLVACMTCPLCSKLFR----DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG--CAPLEKLRADHNL 79 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~----dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~--~~~~~~lr~n~~L 79 (368)
-.+.+.+.|+||..+|. .||.+ -|||+.|+.|+...++ ..|| |..+-. ...+..+..|+.|
T Consensus 6 ~~w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn----~scp-~~~De~~~~~~~~e~p~n~al 72 (861)
T KOG3161|consen 6 LKWVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYN----ASCP-TKRDEDSSLMQLKEEPRNYAL 72 (861)
T ss_pred hhhHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhh----ccCC-CCccccchhcChhhcchhHHH
Confidence 45667889999977764 69999 7999999999987664 3477 433211 2234444455544
No 72
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.49 E-value=0.028 Score=53.57 Aligned_cols=44 Identities=27% Similarity=0.820 Sum_probs=31.8
Q ss_pred ccCccccccc-ccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 19 MTCPLCSKLF-RDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 19 L~CpIC~~l~-~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..|-.|...- .+|..++.|+|.||..|...... ..||.|+..+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc----cccccccceee
Confidence 4566665432 67778889999999999754332 27999998754
No 73
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.24 E-value=0.073 Score=52.66 Aligned_cols=66 Identities=15% Similarity=0.382 Sum_probs=48.9
Q ss_pred cccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcccc
Q 017653 14 KLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPSK 90 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~~ 90 (368)
.+-+.+.||+|.+.+..|+.--.=||.-|..|-... ...||.|+..++ + .....++.+++..+...
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~-----~~~CP~Cr~~~g-----~-~R~~amEkV~e~~~vpC 109 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV-----SNKCPTCRLPIG-----N-IRCRAMEKVAEAVLVPC 109 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh-----cccCCccccccc-----c-HHHHHHHHHHHhceecc
Confidence 355689999999999999876233799999997543 356999998764 2 36677777777665443
No 74
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.13 E-value=0.096 Score=38.23 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=24.9
Q ss_pred cccCcccccccccceecCCCCCcccHHH--HHHHhhccCCCcccCCCc
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKC--IYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~C--I~~~l~~~~~~~CP~Cr~ 63 (368)
.|.|||....+..|+....|.|.-|.+- +.......+...||+|++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence 4789999999999999989999987643 122222235688999985
No 75
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.038 Score=55.43 Aligned_cols=45 Identities=27% Similarity=0.620 Sum_probs=34.4
Q ss_pred ccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 15 LVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.....|-||.+-..+.+.+ +|||+-| |..-.. ....||+||..+
T Consensus 302 ~~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~---~l~~CPvCR~rI 346 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSK---HLPQCPVCRQRI 346 (355)
T ss_pred cCCCCceEEecCCccceeee-cCCcEEE--chHHHh---hCCCCchhHHHH
Confidence 34456899999999999998 8999987 765443 234499999754
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.064 Score=53.32 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=39.1
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.-.||+|..--.+|.++.--|-.||..||..++.. ..+||+-..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcc
Confidence 345799999999999988666999999999999974 46799877554
No 77
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=92.74 E-value=0.12 Score=39.49 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=40.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.+.+ +.+.+|..||+.|..+.|++. .+..++|.|.+|.+..+|.+
T Consensus 12 ~~~v-~~~~tV~~lK~~i~~~~gi~~-~~q~Li~~G~~L~d~~~l~~ 56 (70)
T cd01798 12 PVEV-DPDTDIKQLKEVVAKRQGVPP-DQLRVIFAGKELRNTTTIQE 56 (70)
T ss_pred EEEE-CCCChHHHHHHHHHHHHCCCH-HHeEEEECCeECCCCCcHHH
Confidence 3567 889999999999999999977 57788999999999999876
No 78
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.99 E-value=0.12 Score=41.54 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=32.5
Q ss_pred cCcccccccc----cceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 20 TCPLCSKLFR----DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~l~~----dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+|+-|+.-.. -|+..--|-|.|-..||.+|+... ..||+|++...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk--~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK--GVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC--CCCCCCCceeE
Confidence 4556654221 255555699999999999999764 46999998753
No 79
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.93 E-value=0.057 Score=58.45 Aligned_cols=56 Identities=18% Similarity=0.606 Sum_probs=45.9
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccC-CCcccCCCcccC
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEE-IDSCPVCNTDLG 66 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~-~~~CP~Cr~~l~ 66 (368)
-....+...+.|+||...+.+|+.+ .|.|.||..|+...+.... ...||+|+..+.
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3455666789999999999999888 8999999999988776543 578999996653
No 80
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=91.86 E-value=0.36 Score=40.60 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=47.9
Q ss_pred CCCCCcc-ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhh
Q 017653 275 PLPQISS-CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQ 336 (368)
Q Consensus 275 ~lp~i~~-~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~ 336 (368)
.||.|-+ +|| + +..+||+.+...|.++|.|..+.-+=+.++|..+..+.||.+|.+.+.+
T Consensus 28 ~lp~ldk~KfL-v-p~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kd 88 (104)
T PF02991_consen 28 KLPDLDKKKFL-V-PKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKD 88 (104)
T ss_dssp SS---SSSEEE-E-ETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-
T ss_pred ChhhcCccEEE-E-cCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCC
Confidence 3888876 688 6 8999999999999999999999889999999888889999999998865
No 81
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=91.47 E-value=0.16 Score=38.71 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=42.2
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
-+++| ...-|++.|...++++.+++.+..+.+.+.|+.|.+..|+.++
T Consensus 13 ~~~~v-~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 13 IKFKV-KPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp EEEEE-ETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred EEEEE-CCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 46777 6789999999999999999998899999999999999999886
No 82
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=91.28 E-value=0.23 Score=36.29 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=39.8
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
-+++ +...||..||..|.++++++. .+.-++|.|.+|.+..||.+.
T Consensus 13 ~~~v-~~~~tv~~lk~~i~~~~~~~~-~~~~L~~~g~~L~d~~tL~~~ 58 (64)
T smart00213 13 TLEV-KPSDTVSELKEKIAELTGIPV-EQQRLIYKGKVLEDDRTLADY 58 (64)
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCCCH-HHEEEEECCEECCCCCCHHHc
Confidence 4778 788899999999999999976 578899999999998888653
No 83
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=0.14 Score=49.31 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=39.4
Q ss_pred cchhcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhc
Q 017653 6 QTLKVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITE 52 (368)
Q Consensus 6 ~~v~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~ 52 (368)
....+-.+.+.+.--|.+|+..+++||.+ +=||.||+.||.+++..
T Consensus 31 q~~RLgrDsiK~FdcCsLtLqPc~dPvit-~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 31 QRERLGRDSIKPFDCCSLTLQPCRDPVIT-PDGYLFDREAILEYILA 76 (303)
T ss_pred hhhhhcccccCCcceeeeecccccCCccC-CCCeeeeHHHHHHHHHH
Confidence 34456777888888899999999999998 89999999999988854
No 84
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.077 Score=51.57 Aligned_cols=54 Identities=20% Similarity=0.502 Sum_probs=41.0
Q ss_pred cchhcccccccCccccccccc----------ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 10 VNREKLVACMTCPLCSKLFRD----------ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~d----------Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
++...++ +-.|.+|..-+.. -..+ .|.|.|-..||..|-.-...-.||-|+..+
T Consensus 217 lPtkhl~-d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 217 LPTKHLS-DSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCCCC-cchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3444444 4679999876543 3466 799999999999998776667899999765
No 85
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=0.17 Score=51.47 Aligned_cols=48 Identities=15% Similarity=0.400 Sum_probs=38.6
Q ss_pred ccccccCcccccccc---cceecCCCCCcccHHHHHHHhhccCC--CcccCCCcc
Q 017653 15 LVACMTCPLCSKLFR---DATTISECLHSFCRKCIYEKITEEEI--DSCPVCNTD 64 (368)
Q Consensus 15 l~e~L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l~~~~~--~~CP~Cr~~ 64 (368)
++..|.|||=.+.-. -|+.+ .|||..|+.-|.+.... +. +.||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKN-GSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeee-eccceecHHHHHHHhhC-CCeeeeCCCCCcc
Confidence 667899999776554 38888 89999999999887764 55 999999643
No 86
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=0.24 Score=50.70 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=35.7
Q ss_pred ccccccCcccccccc--cceecCCCCCcccHHHHHHHhhcc---C---CCcccCCCc
Q 017653 15 LVACMTCPLCSKLFR--DATTISECLHSFCRKCIYEKITEE---E---IDSCPVCNT 63 (368)
Q Consensus 15 l~e~L~CpIC~~l~~--dPv~l~~CgHtFC~~CI~~~l~~~---~---~~~CP~Cr~ 63 (368)
....+.|.||.+... .-+...+|+|.||+.|+..|+... + ...||-|..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 445688999987664 445555999999999999888632 2 357877664
No 87
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.43 E-value=0.19 Score=50.53 Aligned_cols=53 Identities=21% Similarity=0.500 Sum_probs=42.2
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
..+.-++...|-||-+-+.---.+ +|+|..|--|-.+...-...+.||+|+..
T Consensus 54 addtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 54 ADDTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 455667889999999887766666 89999999998765544456789999965
No 88
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.01 E-value=0.11 Score=52.72 Aligned_cols=47 Identities=26% Similarity=0.628 Sum_probs=38.2
Q ss_pred ccccCcccccccc---cceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLFR---DATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
-.+.|-.|.+.+- +-..-.+|.|.|-..|++.++.+.+...||.||.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4689999998773 2233348999999999999998877899999994
No 89
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=0.09 Score=41.91 Aligned_cols=35 Identities=26% Similarity=0.659 Sum_probs=28.5
Q ss_pred ceecCCCCCcccHHHHHHHhhccC-CCcccCCCccc
Q 017653 31 ATTISECLHSFCRKCIYEKITEEE-IDSCPVCNTDL 65 (368)
Q Consensus 31 Pv~l~~CgHtFC~~CI~~~l~~~~-~~~CP~Cr~~l 65 (368)
|.++--|.|.|-..||.+|+.... ...||.||+..
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 666656999999999999997643 36899999765
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.19 E-value=0.21 Score=50.10 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=34.6
Q ss_pred cccccccCcccccccc--cc-eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 14 KLVACMTCPLCSKLFR--DA-TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~--dP-v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.-++++ ||+|.+.+. +- ...-+||-..|+-|+.....+ -+-.||.||..+.
T Consensus 11 edeed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~ 64 (480)
T COG5175 11 EDEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYD 64 (480)
T ss_pred cccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhcc
Confidence 334445 999998663 21 122268888899998766543 4568999998764
No 91
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.97 E-value=0.1 Score=49.91 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=35.2
Q ss_pred cccCccccc-ccccc---e-ecCCCCCcccHHHHHHHhhccCCCccc--CCCcccC
Q 017653 18 CMTCPLCSK-LFRDA---T-TISECLHSFCRKCIYEKITEEEIDSCP--VCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~-l~~dP---v-~l~~CgHtFC~~CI~~~l~~~~~~~CP--~Cr~~l~ 66 (368)
+-.||+|.. .+-+| + +-++|-|..|.+|+.+.+.. +...|| -|...+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHH
Confidence 458999974 33333 1 12259999999999999975 678899 7877654
No 92
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=87.83 E-value=0.58 Score=36.11 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=39.7
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
|.+ +...||..||.-|..+.|++. .+.-+.|.|.+|.+..+|.+.
T Consensus 15 l~v-~~~~tV~~lK~~i~~~~gi~~-~~q~L~~~G~~L~d~~~L~~~ 59 (74)
T cd01807 15 LQV-SEKESVSTLKKLVSEHLNVPE-EQQRLLFKGKALADDKRLSDY 59 (74)
T ss_pred EEE-CCCCcHHHHHHHHHHHHCCCH-HHeEEEECCEECCCCCCHHHC
Confidence 577 889999999999999999977 577788999999999998753
No 93
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=87.71 E-value=0.61 Score=36.09 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+.+ +...||..||..|..+.|++.+ +.-++|.|++|.+..+|.+
T Consensus 13 l~v-~~~~TV~~lK~~I~~~~gi~~~-~q~Li~~G~~L~D~~~l~~ 56 (70)
T cd01794 13 LSV-SSKDTVGQLKKQLQAAEGVDPC-CQRWFFSGKLLTDKTRLQE 56 (70)
T ss_pred EEE-CCcChHHHHHHHHHHHhCCCHH-HeEEEECCeECCCCCCHHH
Confidence 566 7889999999999999999875 5677899999999999876
No 94
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=87.36 E-value=1.4 Score=38.09 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=48.6
Q ss_pred CccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhh
Q 017653 279 ISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQ 336 (368)
Q Consensus 279 i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~ 336 (368)
..++||=+ +..+||..+.-.|.++|+|.++. +-+.|+|..+..+.+|.+|.+...+
T Consensus 40 dK~KfllV-P~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~lYe~~KD 95 (121)
T PTZ00380 40 SKVHFLAL-PRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADACKR 95 (121)
T ss_pred CceEEEEc-CCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHHHHHhcC
Confidence 45678778 99999999999999999999997 9999999777778899999887644
No 95
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.11 E-value=0.29 Score=54.09 Aligned_cols=41 Identities=24% Similarity=0.582 Sum_probs=36.0
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
.-.|..|...+.-|++-..|||.|...|+. .+...||.|+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 358999999999999888999999999987 35678999984
No 96
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=87.07 E-value=0.78 Score=35.31 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=39.1
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCC--CchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNL--ISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l--~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.+.+ +...||..||..|..+.|+ +. .+.-|++.|.+|.+..+|.+
T Consensus 14 ~l~v-~~~~TV~~lK~~i~~~~~i~~~~-~~q~L~~~G~~L~d~~~L~~ 60 (77)
T cd01805 14 PIEV-DPDDTVAELKEKIEEEKGCDYPP-EQQKLIYSGKILKDDTTLEE 60 (77)
T ss_pred EEEE-CCCCcHHHHHHHHHHhhCCCCCh-hHeEEEECCEEccCCCCHHH
Confidence 4677 8889999999999999998 54 57788999999999988866
No 97
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=86.69 E-value=0.42 Score=35.97 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=40.2
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.+ +..-||..||+.|..+.+++. .+..++++|..|.+..||.++
T Consensus 9 ~~~v-~~~~tV~~lK~~i~~~~~~~~-~~~~L~~~G~~L~d~~tL~~~ 54 (69)
T PF00240_consen 9 TLEV-DPDDTVADLKQKIAEETGIPP-EQQRLIYNGKELDDDKTLSDY 54 (69)
T ss_dssp EEEE-ETTSBHHHHHHHHHHHHTSTG-GGEEEEETTEEESTTSBTGGG
T ss_pred EEEE-CCCCCHHHhhhhccccccccc-ccceeeeeeecccCcCcHHHc
Confidence 4567 788999999999999999887 578899999999999998764
No 98
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=86.41 E-value=0.77 Score=35.37 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=37.4
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCC-ccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLST-LELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~-~~l~~ 329 (368)
|.+ +..+||..||.+|..+-|++.+ +.-|+++|.+|.+. .+|.+
T Consensus 14 l~v-~~~~TV~~lK~~I~~~~gip~~-~q~Li~~Gk~L~D~~~~L~~ 58 (71)
T cd01796 14 LDV-DPDLELENFKALCEAESGIPAS-QQQLIYNGRELVDNKRLLAL 58 (71)
T ss_pred EEE-CCcCCHHHHHHHHHHHhCCCHH-HeEEEECCeEccCCcccHHH
Confidence 677 8899999999999999999875 56788999999886 46654
No 99
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=85.81 E-value=1.1 Score=33.09 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=37.5
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+++ +.++||..||+.|.+..+++.+ .+-+++.|.++.+..+|.+
T Consensus 12 ~~~-~~~~ti~~lK~~i~~~~~~~~~-~~~l~~~g~~l~d~~~l~~ 55 (69)
T cd01769 12 LEV-SPDDTVAELKAKIAAKEGVPPE-QQRLIYAGKILKDDKTLSD 55 (69)
T ss_pred EEE-CCCChHHHHHHHHHHHHCcChH-HEEEEECCcCCCCcCCHHH
Confidence 566 7789999999999999998774 6788999999988888754
No 100
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=85.49 E-value=0.88 Score=34.64 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=38.3
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+.+ +...||..||+.|.++.+++. ++..+.|.|.++.+..+|.+
T Consensus 15 ~~v-~~~~tV~~lK~~i~~~~g~~~-~~q~L~~~g~~L~d~~~L~~ 58 (76)
T cd01803 15 LEV-EPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSD 58 (76)
T ss_pred EEE-CCcCcHHHHHHHHHHHhCCCH-HHeEEEECCEECCCCCcHHH
Confidence 677 788999999999999999977 46778899999999888765
No 101
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=85.37 E-value=0.9 Score=35.09 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=40.6
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.-|.+ +...||..||..|..+.|++.+ +.-++|.|.+|.+..||.+
T Consensus 11 ~~l~v-~~~~tV~~lK~~i~~~~gip~~-~q~Li~~Gk~L~D~~tL~~ 56 (74)
T cd01793 11 HTLEV-TGQETVSDIKAHVAGLEGIDVE-DQVLLLAGVPLEDDATLGQ 56 (74)
T ss_pred EEEEE-CCcCcHHHHHHHHHhhhCCCHH-HEEEEECCeECCCCCCHHH
Confidence 34778 8899999999999999999874 6688999999999999976
No 102
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=0.44 Score=47.28 Aligned_cols=41 Identities=27% Similarity=0.711 Sum_probs=27.7
Q ss_pred cCccccccccc-ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 20 TCPLCSKLFRD-ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 20 ~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.|--|..-+.. -.++ +|.|.||..|... ...+.||.|...+
T Consensus 92 fCd~Cd~PI~IYGRmI-PCkHvFCl~CAr~----~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMI-PCKHVFCLECARS----DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeeccc-ccchhhhhhhhhc----CccccCcCcccHH
Confidence 56667554332 3355 8999999999642 2357899997654
No 103
>PTZ00044 ubiquitin; Provisional
Probab=85.16 E-value=0.98 Score=34.71 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=38.1
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+++ +...||..||..|..+.|++.+ +..+.+.|.++.+..+|.+
T Consensus 15 l~v-~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~g~~L~d~~~l~~ 58 (76)
T PTZ00044 15 FNF-EPDNTVQQVKMALQEKEGIDVK-QIRLIYSGKQMSDDLKLSD 58 (76)
T ss_pred EEE-CCCCcHHHHHHHHHHHHCCCHH-HeEEEECCEEccCCCcHHH
Confidence 677 8889999999999999999775 5667799999999988754
No 104
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=84.59 E-value=0.32 Score=39.56 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=26.2
Q ss_pred ccccccCcccccccc-cceecCCCCCcccHHHHH
Q 017653 15 LVACMTCPLCSKLFR-DATTISECLHSFCRKCIY 47 (368)
Q Consensus 15 l~e~L~CpIC~~l~~-dPv~l~~CgHtFC~~CI~ 47 (368)
+.+.-.|++|...+. .++...+|||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456678999998776 455667999999999974
No 105
>PHA03096 p28-like protein; Provisional
Probab=84.31 E-value=0.56 Score=46.19 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=31.7
Q ss_pred ccCccccccccc-c------eecCCCCCcccHHHHHHHhhccC-CCcccCCCc
Q 017653 19 MTCPLCSKLFRD-A------TTISECLHSFCRKCIYEKITEEE-IDSCPVCNT 63 (368)
Q Consensus 19 L~CpIC~~l~~d-P------v~l~~CgHtFC~~CI~~~l~~~~-~~~CP~Cr~ 63 (368)
-.|.||++.... + -.++.|.|.||..||..|..... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 679999975532 1 13458999999999999887532 345666663
No 106
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=83.82 E-value=1.2 Score=34.33 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.6
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
|.| +...||..||+.|..+.|++.+ +.-++|.|.+|.+..||.+
T Consensus 13 l~v-~~~~tV~~lK~~I~~~~gi~~~-~q~L~~~G~~L~D~~tL~~ 56 (74)
T cd01810 13 YEV-QLTQTVATLKQQVSQRERVQAD-QFWLSFEGRPMEDEHPLGE 56 (74)
T ss_pred EEE-CCcChHHHHHHHHHHHhCCCHH-HeEEEECCEECCCCCCHHH
Confidence 677 8889999999999999999875 5577899999999998865
No 107
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=83.73 E-value=1.2 Score=33.44 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=38.5
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+++ +...||..||+-|..+.|++. .+.-+++.|+++.+..+|.+
T Consensus 15 ~~v-~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~g~~L~d~~~L~~ 58 (72)
T cd01809 15 FTV-EEEITVLDLKEKIAEEVGIPV-EQQRLIYSGRVLKDDETLSE 58 (72)
T ss_pred EEE-CCCCcHHHHHHHHHHHHCcCH-HHeEEEECCEECCCcCcHHH
Confidence 677 788999999999999999976 46788899999999888876
No 108
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.13 E-value=1.1 Score=39.38 Aligned_cols=50 Identities=22% Similarity=0.501 Sum_probs=40.6
Q ss_pred ccccCcccccccccceecC---CCCCcccHHHHHHHhhccC-CCcccCCCcccC
Q 017653 17 ACMTCPLCSKLFRDATTIS---ECLHSFCRKCIYEKITEEE-IDSCPVCNTDLG 66 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~---~CgHtFC~~CI~~~l~~~~-~~~CP~Cr~~l~ 66 (368)
.-..|-||.+...+...+. .||-..|-.|....|..-. ...||+|+..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 5678999999988877765 4999999999998886533 367999998764
No 109
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.06 E-value=0.33 Score=55.74 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=40.5
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
...+-..+.|++|.+.+++--.+.-|||-+|..|+..|+. ....||.|....
T Consensus 1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~--~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY--ASSRCPICKSIK 1198 (1394)
T ss_pred HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH--HhccCcchhhhh
Confidence 3445567799999999985444446999999999999985 467899998554
No 110
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=82.53 E-value=1.4 Score=31.11 Aligned_cols=41 Identities=20% Similarity=0.600 Sum_probs=24.3
Q ss_pred CcccccccccceecC--CCCCcccHHHHHHHhhccCCCcccCC
Q 017653 21 CPLCSKLFRDATTIS--ECLHSFCRKCIYEKITEEEIDSCPVC 61 (368)
Q Consensus 21 CpIC~~l~~dPv~l~--~CgHtFC~~CI~~~l~~~~~~~CP~C 61 (368)
|.+|.++...-+.-. .|+-.+-..|+..++.......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888776653 48878889999999987555579987
No 111
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=1.2 Score=43.85 Aligned_cols=68 Identities=26% Similarity=0.489 Sum_probs=44.4
Q ss_pred ccccCcccccccccceecCCC----CCcccHHHHHHHhhccC---CCcccCCCcccCCCCCCCC-ccchHHHHHHHHhcc
Q 017653 17 ACMTCPLCSKLFRDATTISEC----LHSFCRKCIYEKITEEE---IDSCPVCNTDLGCAPLEKL-RADHNLQDLRIKIFP 88 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~C----gHtFC~~CI~~~l~~~~---~~~CP~Cr~~l~~~~~~~l-r~n~~L~~Lvekl~p 88 (368)
.-|.|-||++-|.|-.+. .| .|-||..|-.+.+..++ ...||.-.+ +++..- .+=.-||.-|..++.
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdk----CPLvgS~vPWAFMQGEIatILa 341 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDK----CPLVGSNVPWAFMQGEIATILA 341 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhhcCCCceeCCCCCc----CcccCCcccHHHhhhhHHHHhc
Confidence 348999999999998877 57 59999999988887653 345664321 222222 233344556666654
Q ss_pred c
Q 017653 89 S 89 (368)
Q Consensus 89 ~ 89 (368)
.
T Consensus 342 g 342 (352)
T KOG3579|consen 342 G 342 (352)
T ss_pred c
Confidence 3
No 112
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=82.46 E-value=1.5 Score=33.37 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=39.1
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+++ +...||..||..|..+.+++.+ +.-+++.|..+.+..||.+.
T Consensus 15 ~~v-~~~~tv~~lK~~i~~~~g~~~~-~qrL~~~g~~L~d~~tl~~~ 59 (76)
T cd01806 15 IDI-EPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQMNDDKTAADY 59 (76)
T ss_pred EEE-CCCCCHHHHHHHHhHhhCCChh-hEEEEECCeEccCCCCHHHc
Confidence 678 7899999999999999999885 56677999999999888764
No 113
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=82.40 E-value=1.6 Score=32.85 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=37.1
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+++ +...||..||..|..+.|++.+ +..++++|.++.+..+|.+
T Consensus 14 i~v-~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~g~~l~d~~~L~~ 57 (71)
T cd01812 14 LSI-SSQATFGDLKKMLAPVTGVEPR-DQKLIFKGKERDDAETLDM 57 (71)
T ss_pred EEE-CCCCcHHHHHHHHHHhhCCChH-HeEEeeCCcccCccCcHHH
Confidence 677 8899999999999999999875 5678899999887776654
No 114
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=81.42 E-value=1.8 Score=33.01 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=39.2
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
|.+ +...||..||+-|.++.+++. .+..+.+.|..|.+..||.+.
T Consensus 14 l~v-~~~~TV~~lK~~I~~~~~i~~-~~~~Li~~Gk~L~d~~tL~~~ 58 (71)
T cd01808 14 IEI-AEDASVKDFKEAVSKKFKANQ-EQLVLIFAGKILKDTDTLTQH 58 (71)
T ss_pred EEE-CCCChHHHHHHHHHHHhCCCH-HHEEEEECCeEcCCCCcHHHc
Confidence 678 888999999999999999754 678899999999999888653
No 115
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=80.37 E-value=1.9 Score=48.17 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHhCCC----chhhhhhhhcCCcCCCCccHHHHHH-HHhhc
Q 017653 292 PVSFIKRYIVKKLNLI----SEAEVEISLRGQPVLSTLELHNLIN-WWVQT 337 (368)
Q Consensus 292 ~v~~l~Kyl~~KL~l~----~e~evei~c~g~~~~~~~~l~~i~~-~w~~~ 337 (368)
.++.||.+|++-|+|. +.+-+|++++|++|...|++++|.+ .|...
T Consensus 16 lmrdvknkIc~d~~m~~lleDd~gmELlV~~~IisldL~v~~Vy~~vW~~~ 66 (802)
T PF13764_consen 16 LMRDVKNKICRDLEMIALLEDDNGMELLVNNKIISLDLPVRDVYEKVWKPN 66 (802)
T ss_pred hHHHHHHHHhhhcccchhccCCcccceeecCeeecCCCcHHHHHHHHhccc
Confidence 5889999999999984 5678999999999999999999999 99654
No 116
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.96 E-value=2 Score=38.82 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=17.7
Q ss_pred ccccCcccccccccceecCCCC
Q 017653 17 ACMTCPLCSKLFRDATTISECL 38 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~Cg 38 (368)
++.+||||++.-.++|.+ -|.
T Consensus 1 ed~~CpICme~PHNAVLL-lCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLL-LCS 21 (162)
T ss_pred CCccCceeccCCCceEEE-Eec
Confidence 367999999999999988 454
No 117
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=78.92 E-value=2.3 Score=33.86 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=38.9
Q ss_pred eeCCCccHHHHHHHHHHHhC--CCchhhhhhhhcCCcCCCCccHHHH
Q 017653 286 VKDGRLPVSFIKRYIVKKLN--LISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 286 ~~~~~~~v~~l~Kyl~~KL~--l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+-.|..||..||.-|..+.+ +.+..+..+++.|..|.+..||.+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dy 62 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFY 62 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHc
Confidence 34799999999999999974 6666788999999999999999763
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.44 E-value=1.4 Score=45.14 Aligned_cols=42 Identities=24% Similarity=0.650 Sum_probs=28.4
Q ss_pred cccCcccc-ccccc---ceecCCCCCcccHHHHHHHhhcc----CCCcccC
Q 017653 18 CMTCPLCS-KLFRD---ATTISECLHSFCRKCIYEKITEE----EIDSCPV 60 (368)
Q Consensus 18 ~L~CpIC~-~l~~d---Pv~l~~CgHtFC~~CI~~~l~~~----~~~~CP~ 60 (368)
..+|.||. +.... -.+. .|+|.||..|+.+++... ....||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 57899999 33221 1123 699999999999888643 2356654
No 119
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=78.16 E-value=2.3 Score=35.50 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=39.5
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.|.+ +...||..||..|..+-|++. .+..++|.|.+|.+..+|.+
T Consensus 41 ~leV-~~~~TV~~lK~kI~~~~gip~-~~QrLi~~Gk~L~D~~tL~d 85 (103)
T cd01802 41 ELRV-SPFETVISVKAKIQRLEGIPV-AQQHLIWNNMELEDEYCLND 85 (103)
T ss_pred EEEe-CCCCcHHHHHHHHHHHhCCCh-HHEEEEECCEECCCCCcHHH
Confidence 3677 888999999999999999877 46788999999999998865
No 120
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=2.8 Score=40.05 Aligned_cols=46 Identities=30% Similarity=0.743 Sum_probs=36.8
Q ss_pred ccCcccccccc--cceecCCCCCcccHHHHHHHhhcc------CCCcccCCCccc
Q 017653 19 MTCPLCSKLFR--DATTISECLHSFCRKCIYEKITEE------EIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~--dPv~l~~CgHtFC~~CI~~~l~~~------~~~~CP~Cr~~l 65 (368)
-.|.+|..-+. +.+.+ -|.|.|-..|+.++...- ..+.||.|...+
T Consensus 51 pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 46899988774 56777 799999999999887542 247899999876
No 121
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=77.07 E-value=2.3 Score=46.42 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=55.8
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhh---ccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKIT---EEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~---~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~ 87 (368)
....+.-.|.|||+...+.-|..-..|.|.-|..-.. ++. ....+.||+|.+.. .++.+..|..+.+++...-
T Consensus 299 ~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~---~~e~l~iD~~~~~iL~~~~ 374 (636)
T KOG2169|consen 299 ATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAA---PFEGLIIDGYFLNILQSCQ 374 (636)
T ss_pred eeccceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccc---cccchhhhHHHHHHHhhcc
Confidence 3345556799999999888887776899987776532 221 22468999999764 7899999999999988775
Q ss_pred cc
Q 017653 88 PS 89 (368)
Q Consensus 88 p~ 89 (368)
..
T Consensus 375 ~~ 376 (636)
T KOG2169|consen 375 AN 376 (636)
T ss_pred CC
Confidence 43
No 122
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.35 E-value=0.82 Score=45.25 Aligned_cols=51 Identities=25% Similarity=0.490 Sum_probs=38.2
Q ss_pred cccccCccccccccc-c-eecCCCCCcccHHHHHHHhhcc---------------------CCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRD-A-TTISECLHSFCRKCIYEKITEE---------------------EIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~d-P-v~l~~CgHtFC~~CI~~~l~~~---------------------~~~~CP~Cr~~l~ 66 (368)
.....|.||+-=|.+ | ++.++|.|.|-..|+.+++..- ....||+|+..+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 346789999876653 4 6666999999999998887531 1256999998775
No 123
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=75.53 E-value=1.4 Score=32.24 Aligned_cols=39 Identities=31% Similarity=0.790 Sum_probs=25.8
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
+.|.||.|.+.|... . ++.-|......+.....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-~-------L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-S-------LVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-H-------HHHHHHhHCcCCCCCccCCCchh
Confidence 468999999954432 2 33446665555445688999985
No 124
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.71 E-value=2 Score=42.85 Aligned_cols=49 Identities=18% Similarity=0.427 Sum_probs=37.6
Q ss_pred cccccccCcccccccc---cceecCCCCCcccHHHHHHHhhcc-CCCcccCCCc
Q 017653 14 KLVACMTCPLCSKLFR---DATTISECLHSFCRKCIYEKITEE-EIDSCPVCNT 63 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l~~~-~~~~CP~Cr~ 63 (368)
.++..|+||+=.+.-. -|+++ .|||..-..-+...-.+. ..+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml-~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVML-ECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeee-eccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 5667899998877664 48888 899999998887665442 1589999964
No 125
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=74.40 E-value=2.6 Score=48.19 Aligned_cols=64 Identities=22% Similarity=0.460 Sum_probs=41.8
Q ss_pred CCCcccchhcchhcccccccCcccccccc-----cc-eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 1 MATTEQTLKVNREKLVACMTCPLCSKLFR-----DA-TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 1 m~~~~~~v~v~~~~l~e~L~CpIC~~l~~-----dP-v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
|..+++.-.-+...+.. -.|.||.+..- +| |...+|+--.|+.|. ++=..+++..||.|+..+.
T Consensus 1 ~~~~~~~~~k~~~~~~~-qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 1 MESEGETGAKPMKHGGG-QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCCCCCCCCCCccccCC-ceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 34444433223444443 38999998642 22 233479989999998 4555568899999998875
No 126
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.20 E-value=2 Score=36.29 Aligned_cols=27 Identities=30% Similarity=0.657 Sum_probs=23.2
Q ss_pred CCCCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 36 ECLHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 36 ~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
.|-|.|-..||.+|+.. ...||+|...
T Consensus 80 ~CNHaFH~hCisrWlkt--r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT--RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh--cCcCCCcCcc
Confidence 69999999999999975 4569999865
No 127
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=74.09 E-value=4 Score=31.98 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=37.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
-+.+ +...||..||+-|.++.+++. ++..+++.|.+|.+. +|.+
T Consensus 15 ~l~v-~~~~TV~~LK~~I~~~~~~~~-~~qrL~~~Gk~L~d~-~L~~ 58 (78)
T cd01804 15 DLSV-PPDETVEGLKKRISQRLKVPK-ERLALLHRETRLSSG-KLQD 58 (78)
T ss_pred EEEE-CCcCHHHHHHHHHHHHhCCCh-HHEEEEECCcCCCCC-cHHH
Confidence 3677 788999999999999999876 577899999999887 7554
No 128
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=73.19 E-value=4.2 Score=27.45 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=36.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLEL 327 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l 327 (368)
-+++ +...||..|+++|..++++ +..++.|.+.|..+.....+
T Consensus 11 ~~~~-~~~~tv~~l~~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~ 53 (69)
T cd00196 11 ELLV-PSGTTVADLKEKLAKKLGL-PPEQQRLLVNGKILPDSLTL 53 (69)
T ss_pred EEEc-CCCCcHHHHHHHHHHHHCc-ChHHeEEEECCeECCCCCcH
Confidence 3555 6789999999999999995 55789999999999887766
No 129
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.29 E-value=3.3 Score=32.82 Aligned_cols=42 Identities=26% Similarity=0.676 Sum_probs=27.4
Q ss_pred cCcccccccc----cceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 20 TCPLCSKLFR----DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~l~~----dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.|--|...+- ++.+- .=.||||..|....+. -.||.|...+.
T Consensus 7 nCECCDrDLpp~s~dA~IC-tfEcTFCadCae~~l~----g~CPnCGGelv 52 (84)
T COG3813 7 NCECCDRDLPPDSTDARIC-TFECTFCADCAENRLH----GLCPNCGGELV 52 (84)
T ss_pred CCcccCCCCCCCCCceeEE-EEeeehhHhHHHHhhc----CcCCCCCchhh
Confidence 4555655542 33322 2358999999987773 24999998764
No 130
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.47 E-value=2.5 Score=39.78 Aligned_cols=38 Identities=24% Similarity=0.694 Sum_probs=28.5
Q ss_pred CcccccccccceecCCCCC-cccHHHHHHHhhccCCCcccCCCccc
Q 017653 21 CPLCSKLFRDATTISECLH-SFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 21 CpIC~~l~~dPv~l~~CgH-tFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
|-.|.+--..-+.+ ||.| .+|..|-.. ...||+|+...
T Consensus 161 Cr~C~~~~~~Vlll-PCrHl~lC~~C~~~------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLL-PCRHLCLCGICDES------LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEee-cccceEeccccccc------CccCCCCcChh
Confidence 99998877775555 9998 679999432 45699999653
No 131
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=67.84 E-value=5.3 Score=30.10 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=28.5
Q ss_pred ccCcccccccc-cc-eecCCCC--CcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 19 MTCPLCSKLFR-DA-TTISECL--HSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 19 L~CpIC~~l~~-dP-v~l~~Cg--HtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
-.|-.|...+. +. -.. -|. .|||..|....+. ..||.|+..|.
T Consensus 6 pnCE~C~~dLp~~s~~A~-ICSfECTFC~~C~e~~l~----~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAY-ICSFECTFCADCAETMLN----GVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcce-EEeEeCcccHHHHHHHhc----CcCcCCCCccc
Confidence 35777766553 22 111 254 5999999988873 35999998774
No 132
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=67.26 E-value=6.4 Score=31.49 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=50.2
Q ss_pred CeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 259 PIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 259 ~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
.|-+.+. .+.| ..-+++| ..+.|+.-|+.-++.+.|++. .++-+++.|..|.+..|+.++-
T Consensus 11 ~i~I~v~---~~~g-------~~~~~~v-~~~~~l~~l~~~y~~~~gi~~-~~~rf~f~G~~L~~~~T~~~l~ 71 (87)
T cd01763 11 HINLKVK---GQDG-------NEVFFKI-KRSTPLKKLMEAYCQRQGLSM-NSVRFLFDGQRIRDNQTPDDLG 71 (87)
T ss_pred eEEEEEE---CCCC-------CEEEEEE-cCCCHHHHHHHHHHHHhCCCc-cceEEEECCeECCCCCCHHHcC
Confidence 3666666 3333 2357889 899999999999999999987 5999999999999999998763
No 133
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=66.81 E-value=3.5 Score=40.48 Aligned_cols=43 Identities=33% Similarity=0.839 Sum_probs=34.3
Q ss_pred cccCcccccccc----cceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 18 CMTCPLCSKLFR----DATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 18 ~L~CpIC~~l~~----dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
.+.||||.+.+. .|..+ .|||+--..|+..+... + +.||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~-~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVL-KCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCcc-CcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 455999998664 46666 89999889999888764 4 99999986
No 134
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=65.69 E-value=6.8 Score=31.38 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=40.2
Q ss_pred eeeeCCCccHHHHHHHHHHHhC-CCchhhhhhhhcCCcCCCCccHHHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLN-LISEAEVEISLRGQPVLSTLELHNLIN 332 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~-l~~e~evei~c~g~~~~~~~~l~~i~~ 332 (368)
+.+ +...||.-||..|....+ .++..+.-+++.|..|.++.||.++..
T Consensus 18 ve~-~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~ 66 (79)
T cd01790 18 VSC-FLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLR 66 (79)
T ss_pred Eec-CCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhh
Confidence 445 678899999999999985 455567789999999999999998853
No 135
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=65.65 E-value=6.8 Score=35.52 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=36.1
Q ss_pred cccccCcccccccccceecCCCCCcc-----cHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSF-----CRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtF-----C~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...-.|-||.+--. +.. .+|...- -.+|+.+|+...+...|+.|+..+.
T Consensus 6 ~~~~~CRIC~~~~~-~~~-~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVT-NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC-Ccc-CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34568999987653 222 2565422 7899999999888899999998875
No 136
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=65.63 E-value=6.1 Score=29.17 Aligned_cols=27 Identities=30% Similarity=0.945 Sum_probs=15.0
Q ss_pred cCCCCCcccHHHHHHHhhccCCCcccCCC
Q 017653 34 ISECLHSFCRKCIYEKITEEEIDSCPVCN 62 (368)
Q Consensus 34 l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr 62 (368)
-..|++.||..| ..+..+....||-|.
T Consensus 24 C~~C~~~FC~dC--D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDC--DVFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHH--HHTTTTTS-SSSTT-
T ss_pred CCCCCCccccCc--ChhhhccccCCcCCC
Confidence 347999999999 334334567799884
No 137
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=65.00 E-value=42 Score=28.80 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=58.5
Q ss_pred eEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCc-CCCCccHHHHHHHHhhcC
Q 017653 260 IWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQP-VLSTLELHNLINWWVQTS 338 (368)
Q Consensus 260 iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~-~~~~~~l~~i~~~w~~~~ 338 (368)
|-+.|.|- | ..|+|..+=.-| +++=++..+.-||.+-|+|.-.+++-+..+..= =.|...+.+|++++ +
T Consensus 31 V~i~l~ai----G--~~PilK~~k~~i-~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf---~ 100 (116)
T KOG3439|consen 31 VQIRLRAI----G--DAPILKKSKFKI-NPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECF---G 100 (116)
T ss_pred EEEEEecc----C--CCcceecceEEe-CcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhc---C
Confidence 66666632 2 368899999999 999999999999999999988777776655432 23445555555544 4
Q ss_pred CCccceecccCCCccceEEEEeeecC
Q 017653 339 SASERIQTVVGSSAKDFVMVLSYGRK 364 (368)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~m~l~y~r~ 364 (368)
.|..+||+|.-.
T Consensus 101 --------------~d~~Lvl~Yc~s 112 (116)
T KOG3439|consen 101 --------------TDGKLVLNYCIS 112 (116)
T ss_pred --------------CCCEEEEEEeee
Confidence 355899999753
No 138
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=64.37 E-value=10 Score=29.68 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=36.9
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhh--hhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEI--SLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei--~c~g~~~~~~~~l~~ 329 (368)
+.+ +...||..||+-|.++.+++. ++.-+ .+.|..|.+..+|.+
T Consensus 17 ~~v-~~~~TV~~lK~~I~~~~~i~~-~~qrL~~~~~G~~L~D~~tL~~ 62 (80)
T cd01792 17 VSL-RDSMTVSELKQQIAQKIGVPA-FQQRLAHLDSREVLQDGVPLVS 62 (80)
T ss_pred EEc-CCCCcHHHHHHHHHHHhCCCH-HHEEEEeccCCCCCCCCCCHHH
Confidence 466 778999999999999999876 45577 689999999888865
No 139
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.03 E-value=5 Score=41.95 Aligned_cols=76 Identities=29% Similarity=0.563 Sum_probs=54.1
Q ss_pred cchhcccccccCccc-ccccccceec-CCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhc
Q 017653 10 VNREKLVACMTCPLC-SKLFRDATTI-SECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 10 v~~~~l~e~L~CpIC-~~l~~dPv~l-~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~ 87 (368)
...-.+.+.++|++| ...|.+...+ ..|+-+||..||...+.... |+.|...- ..-..+.++..+.......+
T Consensus 211 ~~v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~---~~~c~~~~--~~~~~~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 211 RTVGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKS---MCVCGASN--VLADDLLPPKTLRDTINRIL 285 (448)
T ss_pred HHhccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccccc---CCcchhhc--ccccccCCchhhHHHHHHHH
Confidence 345566788999999 7888887766 56889999999998885533 55554321 23456677888888777776
Q ss_pred ccc
Q 017653 88 PSK 90 (368)
Q Consensus 88 p~~ 90 (368)
...
T Consensus 286 a~~ 288 (448)
T KOG0314|consen 286 ASG 288 (448)
T ss_pred hhh
Confidence 653
No 140
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=63.44 E-value=1 Score=35.36 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=22.5
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
++.||.|...+..- . +|.+|..|-..+.. ...||.|..+|.
T Consensus 1 e~~CP~C~~~L~~~----~-~~~~C~~C~~~~~~---~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----G-GHYHCEACQKDYKK---EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE----T-TEEEETTT--EEEE---EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe----C-CEEECcccccccee---cccCCCcccHHH
Confidence 36899999876521 1 78889999765442 357999998764
No 141
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=63.37 E-value=8.4 Score=29.85 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=37.6
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
|.+ +...||..||..|..+.|++.+. .-+++.|..+.+..||.+.
T Consensus 12 l~v-~~~~TV~~lK~~i~~~~gip~~~-q~L~~~G~~L~d~~tL~~~ 56 (76)
T cd01800 12 FTL-QLSDPVSVLKVKIHEETGMPAGK-QKLQYEGIFIKDSNSLAYY 56 (76)
T ss_pred EEE-CCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEEcCCCCcHHHc
Confidence 566 78899999999999999998854 5778999999888887543
No 142
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=63.28 E-value=6.1 Score=33.22 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=32.1
Q ss_pred cccCcccccccccceec-------CCC---CCcccHHHHHHHhhcc-------CCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTI-------SEC---LHSFCRKCIYEKITEE-------EIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l-------~~C---gHtFC~~CI~~~l~~~-------~~~~CP~Cr~~l~ 66 (368)
-.+|..|..--.+..+. ..| .-.||..||...+.+. ....||.|+..-.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 35677776644444332 235 6689999998777532 4578999997554
No 143
>PLN02189 cellulose synthase
Probab=62.12 E-value=5.3 Score=45.69 Aligned_cols=46 Identities=30% Similarity=0.700 Sum_probs=34.5
Q ss_pred cCcccccccc-----cce-ecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 20 TCPLCSKLFR-----DAT-TISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~l~~-----dPv-~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.|.||.+.+- ++. ...+|+--.|+.|. ++-..+++..||.|+..+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 8999998753 232 22358888999998 4555568899999998875
No 144
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=61.62 E-value=3 Score=36.78 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=26.2
Q ss_pred cccCccccccccc--ceecCCCC------CcccHHHHHHHh
Q 017653 18 CMTCPLCSKLFRD--ATTISECL------HSFCRKCIYEKI 50 (368)
Q Consensus 18 ~L~CpIC~~l~~d--Pv~l~~Cg------HtFC~~CI~~~l 50 (368)
.+.|.||.+-+.+ -|+...|| |.||..|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 6789999998876 55554676 568999999994
No 145
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=60.95 E-value=8 Score=30.45 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=37.3
Q ss_pred CCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 288 DGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 288 ~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+...||..||..|..+.|++. .+.-++|.|..+.+..||.+.
T Consensus 20 ~~~~TV~~lK~~i~~~~gi~~-~~QrLi~~Gk~L~D~~tL~~y 61 (78)
T cd01797 20 SRLTKVEELREKIQELFNVEP-ECQRLFYRGKQMEDGHTLFDY 61 (78)
T ss_pred CCcCcHHHHHHHHHHHhCCCH-HHeEEEeCCEECCCCCCHHHc
Confidence 667899999999999999987 567899999999999998653
No 146
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.65 E-value=4.2 Score=45.50 Aligned_cols=39 Identities=23% Similarity=0.525 Sum_probs=31.3
Q ss_pred hcccccccCccccc-ccccceecCCCCCcccHHHHHHHhh
Q 017653 13 EKLVACMTCPLCSK-LFRDATTISECLHSFCRKCIYEKIT 51 (368)
Q Consensus 13 ~~l~e~L~CpIC~~-l~~dPv~l~~CgHtFC~~CI~~~l~ 51 (368)
..++..-.|-+|.. ++..|..+.+|||.|-+.||.+...
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34566678999987 5567988889999999999987553
No 147
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.47 E-value=4.8 Score=41.82 Aligned_cols=36 Identities=19% Similarity=0.564 Sum_probs=29.5
Q ss_pred cccccCccccccccc-ceecCCCCCcccHHHHHHHhhc
Q 017653 16 VACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKITE 52 (368)
Q Consensus 16 ~e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l~~ 52 (368)
.....|.||.+-+.. .+.. .|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~-~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGL-GCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhc-CCCcHHHHHHHHHHhhh
Confidence 345899999988875 5555 89999999999998865
No 148
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=60.34 E-value=14 Score=31.65 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=49.7
Q ss_pred CCCCCCCCcc-ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHH
Q 017653 272 GDEPLPQISS-CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWW 334 (368)
Q Consensus 272 ~~~~lp~i~~-~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w 334 (368)
++..||-|-+ +||= ...+||+.+.+.|++++.|..+.-+-|..+|.....+.+|-.|.+--
T Consensus 37 ~~~~lp~lDK~KyLV--P~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms~~Ye~~ 98 (116)
T KOG1654|consen 37 GKSQLPDLDKKKYLV--PDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMSALYEEE 98 (116)
T ss_pred ccccCcccccceeec--cccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHHHHHHhh
Confidence 3456888988 6874 56799999999999999999998888888888877777777776643
No 149
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=59.43 E-value=6.1 Score=40.23 Aligned_cols=29 Identities=21% Similarity=0.680 Sum_probs=22.4
Q ss_pred CCCcccHHHHHHHhhcc-----------CCCcccCCCccc
Q 017653 37 CLHSFCRKCIYEKITEE-----------EIDSCPVCNTDL 65 (368)
Q Consensus 37 CgHtFC~~CI~~~l~~~-----------~~~~CP~Cr~~l 65 (368)
|....|..|+.+|+... +...||+||+.+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 55566889999999753 246899999876
No 150
>PRK04023 DNA polymerase II large subunit; Validated
Probab=58.14 E-value=8.4 Score=43.98 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=39.4
Q ss_pred ccccCcccccccccceecCCCCC-----cccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRDATTISECLH-----SFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgH-----tFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
....|+-|.......... .||. .||..|-.. .....||.|...+.......+.....+..-++++
T Consensus 625 g~RfCpsCG~~t~~frCP-~CG~~Te~i~fCP~CG~~----~~~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~l 694 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCP-FCGTHTEPVYRCPRCGIE----VEEDECEKCGREPTPYSKRKIDLKELYDRALENL 694 (1121)
T ss_pred cCccCCCCCCcCCcccCC-CCCCCCCcceeCccccCc----CCCCcCCCCCCCCCccceEEecHHHHHHHHHHHh
Confidence 356899999876443333 6984 599999322 2346799999887544444444444444444433
No 151
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=58.05 E-value=14 Score=28.73 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=37.5
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+.+ +...||..||+-|.++.+++.+. .-+++.|..|.++.||.+
T Consensus 16 ~~v-~~~~TV~~LK~~I~~~~~~~~~~-qrLi~~Gk~L~D~~tL~~ 59 (73)
T cd01791 16 VKC-NPDDTIGDLKKLIAAQTGTRPEK-IVLKKWYTIFKDHISLGD 59 (73)
T ss_pred EEe-CCCCcHHHHHHHHHHHhCCChHH-EEEEeCCcCCCCCCCHHH
Confidence 477 78899999999999999988864 466688999999888775
No 152
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=58.01 E-value=12 Score=30.12 Aligned_cols=48 Identities=25% Similarity=0.573 Sum_probs=19.7
Q ss_pred cccCcccccccc-----ccee-cCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFR-----DATT-ISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~-----dPv~-l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.-.|.||.+-+- ++.+ -..|+-..|+.|..--.. .+...||.|+..+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCcc
Confidence 457999987553 2222 136888889999864443 47889999997763
No 153
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.90 E-value=5.7 Score=39.41 Aligned_cols=30 Identities=23% Similarity=0.758 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHhhcc-----------CCCcccCCCcccC
Q 017653 37 CLHSFCRKCIYEKITEE-----------EIDSCPVCNTDLG 66 (368)
Q Consensus 37 CgHtFC~~CI~~~l~~~-----------~~~~CP~Cr~~l~ 66 (368)
|....|++|+.+|+... ++..||.||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 56677899999988642 4578999998763
No 154
>PLN02436 cellulose synthase A
Probab=55.80 E-value=6.7 Score=45.02 Aligned_cols=46 Identities=30% Similarity=0.736 Sum_probs=34.4
Q ss_pred cCcccccccc-----cce-ecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 20 TCPLCSKLFR-----DAT-TISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~l~~-----dPv-~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.|.||.+.+- ++. -..+|+--.|+.|. ++-..+++..||.|+..+.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 8999998752 232 22368888999998 4555568899999998875
No 155
>PLN02195 cellulose synthase A
Probab=55.79 E-value=8.3 Score=43.89 Aligned_cols=46 Identities=24% Similarity=0.574 Sum_probs=34.1
Q ss_pred ccCcccccccc-----cc-eecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFR-----DA-TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~-----dP-v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
-.|.||.+.+- +| |...+|+--.|+.|. ++=+.+++..||.|+..+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Y 58 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPY 58 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcc
Confidence 47999997442 23 223479999999998 555556889999999876
No 156
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=55.35 E-value=6.8 Score=24.87 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=4.9
Q ss_pred cCccccccc
Q 017653 20 TCPLCSKLF 28 (368)
Q Consensus 20 ~CpIC~~l~ 28 (368)
+||-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466665544
No 157
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=55.29 E-value=9.3 Score=27.97 Aligned_cols=41 Identities=29% Similarity=0.775 Sum_probs=22.6
Q ss_pred cCcccccccccceecCCCC-CcccHHHHHHHhhccCCCcccCCCccc
Q 017653 20 TCPLCSKLFRDATTISECL-HSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 20 ~CpIC~~l~~dPv~l~~Cg-HtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.|.-|-...+. .+ .|. |..|..|+..++. .+..||+|..++
T Consensus 4 nCKsCWf~~k~--Li-~C~dHYLCl~CLt~ml~--~s~~C~iC~~~L 45 (50)
T PF03854_consen 4 NCKSCWFANKG--LI-KCSDHYLCLNCLTLMLS--RSDRCPICGKPL 45 (50)
T ss_dssp ---SS-S--SS--EE-E-SS-EEEHHHHHHT-S--SSSEETTTTEE-
T ss_pred cChhhhhcCCC--ee-eecchhHHHHHHHHHhc--cccCCCcccCcC
Confidence 45545433332 23 465 8889999998884 467899999876
No 158
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=55.07 E-value=17 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=35.0
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCC-CCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVL-STLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~-~~~~l~~ 329 (368)
|.+ +..+||..||..|..+.|++.+.| .+ +.|..+. +..||.+
T Consensus 17 l~v-~~~~TV~~lK~kI~~~~gip~~~Q-rL-~~G~~L~dD~~tL~~ 60 (75)
T cd01799 17 LTV-RPDMTVAQLKDKVFLDYGFPPAVQ-RW-VIGQRLARDQETLYS 60 (75)
T ss_pred EEE-CCCCcHHHHHHHHHHHHCcCHHHE-EE-EcCCeeCCCcCCHHH
Confidence 777 788999999999999999988654 45 8998875 5567654
No 159
>PHA02862 5L protein; Provisional
Probab=54.61 E-value=12 Score=33.59 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=34.2
Q ss_pred ccCcccccccccceecCCCCCc-----ccHHHHHHHhhccCCCcccCCCcccC
Q 017653 19 MTCPLCSKLFRDATTISECLHS-----FCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHt-----FC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
-.|=||.+--.+.+ .+|..+ .-+.|+.+|+...+...|+.|+..+.
T Consensus 3 diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 36888987655443 356542 36799999998877899999998774
No 160
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=54.49 E-value=12 Score=44.54 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=32.0
Q ss_pred cccCccccc--ccccceecCCCCCcccHHHHHHHhhcc--------CCCcccCCCccc
Q 017653 18 CMTCPLCSK--LFRDATTISECLHSFCRKCIYEKITEE--------EIDSCPVCNTDL 65 (368)
Q Consensus 18 ~L~CpIC~~--l~~dPv~l~~CgHtFC~~CI~~~l~~~--------~~~~CP~Cr~~l 65 (368)
+-.|-||.. +-..|-....|+|.|-..|..+.+... +-..||+|...+
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 446777763 223444334999999999987766432 136899999765
No 161
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.34 E-value=16 Score=35.67 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=34.2
Q ss_pred cccccCcccccccccc---eecCCCCCcccHHHHHHHhhccCCCcccCCCcccCC
Q 017653 16 VACMTCPLCSKLFRDA---TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGC 67 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dP---v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~ 67 (368)
+..|+|||-.-.|..- ..+.+|||.|-..-+.+. ....|++|+..+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei----kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI----KASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh----hhccccccCCcccc
Confidence 5679999987655432 234489999988766543 35679999998853
No 162
>PF15616 TerY-C: TerY-C metal binding domain
Probab=52.56 E-value=8.2 Score=33.90 Aligned_cols=48 Identities=31% Similarity=0.645 Sum_probs=37.8
Q ss_pred hcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 9 KVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 9 ~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+|....|...-.||-|...+.-.+- .||+.||.. ..+...||-|....
T Consensus 68 ~vntseL~g~PgCP~CGn~~~fa~C--~CGkl~Ci~-------g~~~~~CPwCg~~g 115 (131)
T PF15616_consen 68 KVNTSELIGAPGCPHCGNQYAFAVC--GCGKLFCID-------GEGEVTCPWCGNEG 115 (131)
T ss_pred EEehHHhcCCCCCCCCcChhcEEEe--cCCCEEEeC-------CCCCEECCCCCCee
Confidence 6777888888999999998776655 599999842 23568899999764
No 163
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=51.81 E-value=19 Score=27.94 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=37.6
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhh---hcCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEIS---LRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~---c~g~~~~~~~~l~~i 330 (368)
+.+ +...||..||.-|..+.+++.+.| =|+ ..|.++.++.+|..+
T Consensus 14 v~v-~~~~Tv~~lK~~i~~~tgvp~~~Q-KLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 14 VTT-LSEDTVLDLKQFIKTLTGVLPERQ-KLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred EEE-CCCCCHHHHHHHHHHHHCCCHHHE-EEEeecccCCcCCCCcCHHHc
Confidence 677 788999999999999999998755 455 489999998888765
No 164
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=50.75 E-value=18 Score=35.21 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=39.4
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
.++||+=...+.+|+.-..|||.|=+.=|..++.......||+-+.
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 4799999999999999889999999999999887655678987543
No 165
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.14 E-value=11 Score=43.29 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=35.4
Q ss_pred cccCcccccccc-----cc-eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFR-----DA-TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~-----dP-v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.-.|.||.+..- +| |...+|+-..|+.|. ++=..+++..||.|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 457999998642 22 223478989999998 4555568899999998775
No 166
>PLN02400 cellulose synthase
Probab=48.86 E-value=8.4 Score=44.31 Aligned_cols=46 Identities=28% Similarity=0.725 Sum_probs=34.3
Q ss_pred cCcccccccc-----cc-eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 20 TCPLCSKLFR-----DA-TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~l~~-----dP-v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.|.||.+.+- +| |..-+|+--.|+.|. ++=..+++..||.|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 8999998642 22 222368888999998 4555568899999998875
No 167
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=48.52 E-value=12 Score=26.78 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=24.0
Q ss_pred Cccccccccc--ceecCCCCCc-----ccHHHHHHHhhccCCCcccCC
Q 017653 21 CPLCSKLFRD--ATTISECLHS-----FCRKCIYEKITEEEIDSCPVC 61 (368)
Q Consensus 21 CpIC~~l~~d--Pv~l~~CgHt-----FC~~CI~~~l~~~~~~~CP~C 61 (368)
|-||++--.+ |... +|.-. .-..|+.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~-pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLIS-PCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE--SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceec-ccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5577654432 4555 67643 367899999988777889987
No 168
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.03 E-value=13 Score=40.57 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=33.8
Q ss_pred hhhhhhhc--------C------CcCCCCccHHHHHH-HHhhcCCCccceecccCCCccceEEEEeeecCCC
Q 017653 310 AEVEISLR--------G------QPVLSTLELHNLIN-WWVQTSSASERIQTVVGSSAKDFVMVLSYGRKAQ 366 (368)
Q Consensus 310 ~evei~c~--------g------~~~~~~~~l~~i~~-~w~~~~~~~~~~~~~~~~~~~~~~m~l~y~r~~~ 366 (368)
..+|++|+ + +.|.|.|+|.-|+- +|-+.+ =+||+|.++..
T Consensus 667 e~iellcn~~~f~~~~D~~~~~fqVldPdM~L~TVr~~iWKs~g-----------------Dlvl~Yr~k~~ 721 (735)
T KOG0308|consen 667 EKIELLCNKALFRDPTDLPRISFQVLDPDMDLRTVRHLIWKSSG-----------------DLVLHYRVKVH 721 (735)
T ss_pred hhhHHHhccccccCcCCccccceEEeCCCCcHHHhhhheecCCC-----------------cEEEEEeeecc
Confidence 35899999 8 99999999999988 997665 37899998764
No 169
>PF14353 CpXC: CpXC protein
Probab=45.19 E-value=17 Score=30.93 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=25.3
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhcc-CCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE-EIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~-~~~~CP~Cr~~l~ 66 (368)
+++||-|...+.-.+-+. ---..=..=....+... ....||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~-I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTS-INADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeE-EcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 378999998887544331 11111112222333111 2478999997653
No 170
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=44.17 E-value=14 Score=41.34 Aligned_cols=53 Identities=19% Similarity=0.455 Sum_probs=38.6
Q ss_pred hcccccccCcccccccccceecC---CCCCcccHHHHHHHhhcc-----CCCcccCCCccc
Q 017653 13 EKLVACMTCPLCSKLFRDATTIS---ECLHSFCRKCIYEKITEE-----EIDSCPVCNTDL 65 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~---~CgHtFC~~CI~~~l~~~-----~~~~CP~Cr~~l 65 (368)
..-...+.|-||.+.+..-..++ .|-|.|-..||..|.... ....||.|+...
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 33446788999999886433333 366999999999998753 358999998543
No 171
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.77 E-value=4.2 Score=39.46 Aligned_cols=45 Identities=22% Similarity=0.660 Sum_probs=34.6
Q ss_pred ccCcccccccc------cceecCC-------CCCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 19 MTCPLCSKLFR------DATTISE-------CLHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 19 L~CpIC~~l~~------dPv~l~~-------CgHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
-.|.+|...+. .|.++.. |||+.|..|+...+...+ ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 45888876665 3666623 999999999998887645 889999853
No 172
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=40.99 E-value=15 Score=28.58 Aligned_cols=13 Identities=38% Similarity=0.953 Sum_probs=9.6
Q ss_pred cccHHHHHHHhhc
Q 017653 40 SFCRKCIYEKITE 52 (368)
Q Consensus 40 tFC~~CI~~~l~~ 52 (368)
.||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999975
No 173
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=39.29 E-value=17 Score=34.57 Aligned_cols=44 Identities=27% Similarity=0.593 Sum_probs=34.7
Q ss_pred ccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 19 MTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
-.|.+|..+...-+..-.|+-.+-..|+..++.. ...||.|+--
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhcc
Confidence 4799999998876655567777788999999954 6779999643
No 174
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.05 E-value=22 Score=30.43 Aligned_cols=42 Identities=26% Similarity=0.623 Sum_probs=27.9
Q ss_pred ccCcccccccccce-------------ecCCCCCcccHHHHHHHhhccCCCcccCCC
Q 017653 19 MTCPLCSKLFRDAT-------------TISECLHSFCRKCIYEKITEEEIDSCPVCN 62 (368)
Q Consensus 19 L~CpIC~~l~~dPv-------------~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr 62 (368)
..|--|+..|.++. .-..|.+.||..|= .+.-+....||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD--~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD--VFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccc--hhhhhhccCCcCCC
Confidence 45999988886542 23469999999983 22222445699886
No 175
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=38.56 E-value=5.7 Score=38.82 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=21.6
Q ss_pred cccCcccccccccceecCCC----CCcccHHHHHHHhhccCCCcccCCCcc
Q 017653 18 CMTCPLCSKLFRDATTISEC----LHSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~C----gHtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
.-.||+|...-.-.+....= .|-+|.-|-..|.- .-..||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~--~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF--VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee--cCCCCcCCCCC
Confidence 46999999877665555322 35679999888764 34579999854
No 176
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=37.84 E-value=17 Score=42.48 Aligned_cols=68 Identities=16% Similarity=0.370 Sum_probs=40.9
Q ss_pred cccCcccccccccceecCCCCCc-----ccHHHHHHHhhc-cCCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 18 CMTCPLCSKLFRDATTISECLHS-----FCRKCIYEKITE-EEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHt-----FC~~CI~~~l~~-~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
.+.||-|....... ....||.. +|..|-...-.+ .....||.|..++.......+.....+..-++++
T Consensus 667 ~rkCPkCG~~t~~~-fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 667 RRRCPSCGTETYEN-RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEECCCCCCccccc-cCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 58999999865554 33369965 499885432211 1134799999887544444444444444444444
No 177
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=37.69 E-value=17 Score=40.55 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=31.2
Q ss_pred ccccCccccccccc--------ceecCCCCCcccHHHHHHHhhcc----CCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRD--------ATTISECLHSFCRKCIYEKITEE----EIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~d--------Pv~l~~CgHtFC~~CI~~~l~~~----~~~~CP~Cr~~l 65 (368)
+.-+|++|..-+.+ |+. .|+|.||-.||..|.... ....|++|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~--~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQ--THVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchh--hhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34577777766655 322 399999999999887542 134567776544
No 178
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=37.34 E-value=20 Score=30.49 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=36.4
Q ss_pred eeeeCCCccHHHHHHHHHHHh------CCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKL------NLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL------~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
+++ +.+.||..||.+|.... .-.+.++|-++|.|..|.+.-||.+..
T Consensus 18 ~~~-~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~ 70 (111)
T PF13881_consen 18 FRF-DPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCR 70 (111)
T ss_dssp EEE--TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT
T ss_pred ccc-CccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhC
Confidence 345 77899999999999865 234567899999999999999997664
No 179
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=35.18 E-value=39 Score=23.74 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=29.3
Q ss_pred eCCCccHHHHHHHHHHHhCCC--chhhhhhhhc--CCcCCCCccHHHHHHHH
Q 017653 287 KDGRLPVSFIKRYIVKKLNLI--SEAEVEISLR--GQPVLSTLELHNLINWW 334 (368)
Q Consensus 287 ~~~~~~v~~l~Kyl~~KL~l~--~e~evei~c~--g~~~~~~~~l~~i~~~w 334 (368)
++|.++..-++..| .++|+. ++.|++.+.. +.-=.-.+++.+....|
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 58999999999999 888876 4455655443 22222234444444444
No 180
>PF14658 EF-hand_9: EF-hand domain
Probab=34.43 E-value=61 Score=25.18 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=25.2
Q ss_pred eCCCccHHHHHHHHHHHhC-CCchhhhhhhhc
Q 017653 287 KDGRLPVSFIKRYIVKKLN-LISEAEVEISLR 317 (368)
Q Consensus 287 ~~~~~~v~~l~Kyl~~KL~-l~~e~evei~c~ 317 (368)
|-|.++|++|.-||..==+ -+.|++++=++.
T Consensus 11 ~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~ 42 (66)
T PF14658_consen 11 KTGRVPVSDLITYLRAVTGRSPEESELQDLIN 42 (66)
T ss_pred CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4699999999999988777 777788776663
No 181
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.76 E-value=40 Score=34.59 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=39.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhC---CCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLN---LISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~---l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
-|.| +...||..||+.|..+-| ++. .+.-|+|.|.+|.+..+|.+.
T Consensus 14 ~IeV-~~~~TV~dLK~kI~~~~g~~~ip~-~~QkLIy~GkiL~Dd~tL~dy 62 (378)
T TIGR00601 14 KIDM-EPDETVKELKEKIEAEQGKDAYPV-AQQKLIYSGKILSDDKTVREY 62 (378)
T ss_pred EEEe-CCcChHHHHHHHHHHhhCCCCCCh-hHeEEEECCEECCCCCcHHHc
Confidence 3677 889999999999999988 655 567889999999999998773
No 182
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=32.41 E-value=15 Score=38.79 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=31.2
Q ss_pred ccccccCcccccccccceecCCCCCcccHHHHHHHhhcc-------CC---CcccCCCcccC
Q 017653 15 LVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE-------EI---DSCPVCNTDLG 66 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~-------~~---~~CP~Cr~~l~ 66 (368)
|...+.|..|+.+-..--+..+=.-.||-.|+...-... .. +.||.|...|.
T Consensus 2 l~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred cccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 556778888887664321111334568888885543211 11 67899988776
No 183
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.64 E-value=22 Score=36.42 Aligned_cols=34 Identities=29% Similarity=0.598 Sum_probs=24.0
Q ss_pred cccCcccccccc-----cceecCCCCCcccHHHHHHHhhc
Q 017653 18 CMTCPLCSKLFR-----DATTISECLHSFCRKCIYEKITE 52 (368)
Q Consensus 18 ~L~CpIC~~l~~-----dPv~l~~CgHtFC~~CI~~~l~~ 52 (368)
-..||.|...+. .-++- .|||-||..|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcceEEe-eccccchhhcCcchhhC
Confidence 456777766543 34555 59999999999887743
No 184
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=32 Score=34.72 Aligned_cols=43 Identities=12% Similarity=0.287 Sum_probs=37.2
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELH 328 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~ 328 (368)
|.| |.+-.|.-|++.+++.+||++ +|++|++-|.-|....|++
T Consensus 18 v~v-~~~t~I~~lke~Vak~~gvp~-D~L~viFaGKeLs~~ttv~ 60 (446)
T KOG0006|consen 18 VEV-DSDTSIFQLKEVVAKRQGVPA-DQLRVIFAGKELSNDTTVQ 60 (446)
T ss_pred EEE-ecCCCHHHHHHHHHHhhCCCh-hheEEEEeccccccCceee
Confidence 344 555689999999999999998 7999999999999988777
No 185
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=29.41 E-value=24 Score=27.85 Aligned_cols=10 Identities=40% Similarity=1.105 Sum_probs=7.2
Q ss_pred ccCccccccc
Q 017653 19 MTCPLCSKLF 28 (368)
Q Consensus 19 L~CpIC~~l~ 28 (368)
+.||.|....
T Consensus 2 m~CP~Cg~~a 11 (72)
T PRK09678 2 FHCPLCQHAA 11 (72)
T ss_pred ccCCCCCCcc
Confidence 5788887655
No 186
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=30 Score=38.33 Aligned_cols=51 Identities=25% Similarity=0.438 Sum_probs=36.0
Q ss_pred cccccCcccccccccce---------ecCCCCCcc--------------------cHHHHHHHhhcc------CCCcccC
Q 017653 16 VACMTCPLCSKLFRDAT---------TISECLHSF--------------------CRKCIYEKITEE------EIDSCPV 60 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv---------~l~~CgHtF--------------------C~~CI~~~l~~~------~~~~CP~ 60 (368)
.+.-+|+-|++-+.+|- ..+.||..| |..|-.+|-.-. +...||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 45668999998777652 223688887 999988765422 2478999
Q ss_pred CCcccC
Q 017653 61 CNTDLG 66 (368)
Q Consensus 61 Cr~~l~ 66 (368)
|+-.+.
T Consensus 179 CGP~~~ 184 (750)
T COG0068 179 CGPHLF 184 (750)
T ss_pred cCCCeE
Confidence 996553
No 187
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=27.77 E-value=71 Score=26.45 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=38.5
Q ss_pred CCccHHHHHHHHHHHh-CCCchhhhhhhhcCCcCCCCccHHHHHH
Q 017653 289 GRLPVSFIKRYIVKKL-NLISEAEVEISLRGQPVLSTLELHNLIN 332 (368)
Q Consensus 289 ~~~~v~~l~Kyl~~KL-~l~~e~evei~c~g~~~~~~~~l~~i~~ 332 (368)
.+.||..||+.|+..+ .-.+....-+++.|..|.++-.|.....
T Consensus 22 ~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 22 NTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred CcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 6799999999999999 5556678999999999999999887765
No 188
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.43 E-value=6.5 Score=33.41 Aligned_cols=46 Identities=30% Similarity=0.635 Sum_probs=29.6
Q ss_pred ccccCccccccc----ccceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLF----RDATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~----~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
..-.|.+|...| .....-..|.|.+|..|-.. ........|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 456899997643 23455558999999999543 22234578988874
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=26.84 E-value=46 Score=33.55 Aligned_cols=45 Identities=22% Similarity=0.522 Sum_probs=32.4
Q ss_pred ccCcccccccc--c-ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFR--D-ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~--d-Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
-.||+|...+. + ...-.+|++..|..|+.... .+...||.|+.++
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~--~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIS--DGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccc--ccCCCCCccCCcc
Confidence 57999998662 2 22223689998999987766 3567899999654
No 190
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.61 E-value=33 Score=24.96 Aligned_cols=21 Identities=38% Similarity=0.833 Sum_probs=10.9
Q ss_pred cccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 57 SCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 57 ~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
.||+|..+|. .+.. ++|+..+
T Consensus 22 ~CPlC~r~l~--------~e~~-~~li~~~ 42 (54)
T PF04423_consen 22 CCPLCGRPLD--------EEHR-QELIKKY 42 (54)
T ss_dssp E-TTT--EE---------HHHH-HHHHHHH
T ss_pred cCCCCCCCCC--------HHHH-HHHHHHH
Confidence 8999998762 3333 5666555
No 191
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.19 E-value=19 Score=35.97 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=39.0
Q ss_pred ccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 15 LVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
..++-+|-||...+.-|....-|+|-||..|...+... ...||.|+...
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~--~~~~~d~~~~~ 150 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM--GNDCPDCRGKI 150 (324)
T ss_pred cCCccceeeeeeeEEecccccCceeeeeecCCchhhhh--hhccchhhcCc
Confidence 34566888999999999988779999999998877754 34588888643
No 192
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=45 Score=36.77 Aligned_cols=46 Identities=24% Similarity=0.587 Sum_probs=33.7
Q ss_pred cCcccccccccceecCCCCC-cccHHHHHHHhhccC----CCcccCCCcccC
Q 017653 20 TCPLCSKLFRDATTISECLH-SFCRKCIYEKITEEE----IDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~l~~dPv~l~~CgH-tFC~~CI~~~l~~~~----~~~CP~Cr~~l~ 66 (368)
.|+||-.-+.-+..- .||| -.|..|..+...... ...||+|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccc-cccccccchhhhhhhhhhcccccccccCccccccee
Confidence 588998777666555 7999 899999877654433 467899998443
No 193
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=25.90 E-value=94 Score=24.76 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=46.3
Q ss_pred CCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHH
Q 017653 277 PQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLIN 332 (368)
Q Consensus 277 p~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~ 332 (368)
|.++.+-+.| .-+.+...+-||-+..++++..+-+=|+-.|--+.|.+|--++..
T Consensus 13 p~~p~kv~sV-PE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vfl 67 (76)
T PF03671_consen 13 PKLPYKVISV-PEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFL 67 (76)
T ss_dssp STS-EEEEEE-ETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHH
T ss_pred CCCcceEEec-CCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHh
Confidence 5677888999 889999999999999999999999999999999999999877754
No 194
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.54 E-value=38 Score=24.11 Aligned_cols=33 Identities=21% Similarity=0.687 Sum_probs=23.7
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHH
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEK 49 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~ 49 (368)
+.|.|..|...|........=+..||..|..+.
T Consensus 25 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred cccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 688999999888765322245678899987654
No 195
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=25.50 E-value=78 Score=26.84 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=29.7
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCC
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLS 323 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~ 323 (368)
|-| .+..||..||.-|+++++++++.| -++..|+.|.+
T Consensus 19 L~V-~~~~TVg~LK~lImQ~f~V~P~dQ-kL~~dG~~L~D 56 (107)
T cd01795 19 LLV-SANQTLKELKIQIMHAFSVAPFDQ-NLSIDGKILSD 56 (107)
T ss_pred EEe-CccccHHHHHHHHHHHhcCCcccc-eeeecCceecc
Confidence 446 888999999999999999999765 44455775544
No 196
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=25.35 E-value=39 Score=34.19 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=24.0
Q ss_pred cccCccccccc-cc-ceecCCCCCcccHHHHHHHhhccCCCcccCCC
Q 017653 18 CMTCPLCSKLF-RD-ATTISECLHSFCRKCIYEKITEEEIDSCPVCN 62 (368)
Q Consensus 18 ~L~CpIC~~l~-~d-Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr 62 (368)
.-.|-.|++-+ .. .++-..|.++||..|=. ++ .+....||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~i-HesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FI-HESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchH-HH-HhhhhcCCCcC
Confidence 33477774332 22 23334688888888831 22 12345688886
No 197
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.10 E-value=43 Score=32.02 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=15.0
Q ss_pred cccCcccccccc---cceecCCCCCcc
Q 017653 18 CMTCPLCSKLFR---DATTISECLHSF 41 (368)
Q Consensus 18 ~L~CpIC~~l~~---dPv~l~~CgHtF 41 (368)
.|.||+|..-|. ..... +.+|+|
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C-~~~h~f 27 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWIC-PQNHQF 27 (272)
T ss_pred cccCCCCCcchhcCCCEEEc-CCCCCC
Confidence 379999998874 22222 456766
No 198
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=23.97 E-value=47 Score=23.80 Aligned_cols=32 Identities=31% Similarity=0.680 Sum_probs=20.8
Q ss_pred ccCcccccccc---cceecCCCCCcccHHHHHHHh
Q 017653 19 MTCPLCSKLFR---DATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 19 L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l 50 (368)
-.|.+|..-|. ....-..||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 35778865443 222333799999999986544
No 199
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=23.58 E-value=32 Score=35.86 Aligned_cols=59 Identities=20% Similarity=0.554 Sum_probs=39.6
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
++|+|..|..-|+-.-+-.-=+-.||..|....+.. |-.|...+ .|..|+.+=..|.|.
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlek-----C~~Cg~~I---------~d~iLrA~GkayHp~ 359 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEK-----CNKCGEPI---------MDRILRALGKAYHPG 359 (468)
T ss_pred cceehHhhhhhhccccccccCCcccchHHHHHHHHH-----HhhhhhHH---------HHHHHHhcccccCCC
Confidence 689999998877654444346778899998877754 77787543 455555544455443
No 200
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.58 E-value=49 Score=22.39 Aligned_cols=13 Identities=46% Similarity=1.019 Sum_probs=9.6
Q ss_pred ccCcccccccccc
Q 017653 19 MTCPLCSKLFRDA 31 (368)
Q Consensus 19 L~CpIC~~l~~dP 31 (368)
++||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 5788888877654
No 201
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=23.39 E-value=92 Score=25.13 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=39.7
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCc--cHHHHHHHHhhc
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTL--ELHNLINWWVQT 337 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~--~l~~i~~~w~~~ 337 (368)
||+ .-.++...|+.-|+.||+|+. +++-+.+..++-+... +=.++.+-|-+-
T Consensus 15 Irv-p~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~ 68 (80)
T cd06406 15 IQV-ARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQA 68 (80)
T ss_pred EEc-CCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhh
Confidence 677 778899999999999999984 6788999888865543 334555577443
No 202
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.12 E-value=39 Score=28.07 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=12.2
Q ss_pred CcccHHHHHHHhhc
Q 017653 39 HSFCRKCIYEKITE 52 (368)
Q Consensus 39 HtFC~~CI~~~l~~ 52 (368)
-.||+.|+..|+..
T Consensus 41 AgFCRNCLs~Wy~e 54 (104)
T COG3492 41 AGFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 36999999999975
No 203
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.88 E-value=21 Score=35.66 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=29.6
Q ss_pred ccccCcccccccccceecC---CCC--CcccHHHHHHHhhccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLFRDATTIS---ECL--HSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~---~Cg--HtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
..-.||+|...-.-.++.. .=| +-+|.-|-..|-- .-..||.|..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY--VRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc--cCccCCCCCC
Confidence 3458999998765443321 123 4568888877764 3567999984
No 204
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.71 E-value=52 Score=27.90 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=8.4
Q ss_pred CCcccCCCccc
Q 017653 55 IDSCPVCNTDL 65 (368)
Q Consensus 55 ~~~CP~Cr~~l 65 (368)
-..||.|+..+
T Consensus 26 PivCP~CG~~~ 36 (108)
T PF09538_consen 26 PIVCPKCGTEF 36 (108)
T ss_pred CccCCCCCCcc
Confidence 36699999765
No 205
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=22.52 E-value=76 Score=23.76 Aligned_cols=30 Identities=33% Similarity=0.746 Sum_probs=23.1
Q ss_pred cccCccccccc--ccc-eecCCCCCcccHHHHH
Q 017653 18 CMTCPLCSKLF--RDA-TTISECLHSFCRKCIY 47 (368)
Q Consensus 18 ~L~CpIC~~l~--~dP-v~l~~CgHtFC~~CI~ 47 (368)
.-.|++|.+.| .+. |+-..||-.+-+.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 45799999998 444 4556799999999964
No 206
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.66 E-value=48 Score=30.05 Aligned_cols=24 Identities=42% Similarity=0.909 Sum_probs=18.1
Q ss_pred CCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 38 LHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 38 gHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
-+.||..|-.+-+.. ||.|..++.
T Consensus 27 ~~~fC~kCG~~tI~~-----Cp~C~~~Ir 50 (158)
T PF10083_consen 27 REKFCSKCGAKTITS-----CPNCSTPIR 50 (158)
T ss_pred HHHHHHHhhHHHHHH-----CcCCCCCCC
Confidence 367999998776643 888887764
No 208
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=21.65 E-value=54 Score=27.05 Aligned_cols=35 Identities=20% Similarity=0.745 Sum_probs=25.0
Q ss_pred ccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 19 MTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 19 L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
-.|-+|..-+.. =||.||..|-+. .-.|.+|+..+
T Consensus 45 ~~C~~CK~~v~q------~g~~YCq~CAYk------kGiCamCGKki 79 (90)
T PF10235_consen 45 SKCKICKTKVHQ------PGAKYCQTCAYK------KGICAMCGKKI 79 (90)
T ss_pred cccccccccccc------CCCccChhhhcc------cCcccccCCee
Confidence 368888765542 388999999642 23599999865
No 209
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.60 E-value=65 Score=26.51 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=36.4
Q ss_pred CCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCC
Q 017653 289 GRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSA 340 (368)
Q Consensus 289 ~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~ 340 (368)
..|++...++ |+++|||.. ++|+-.-...+-. .-+.+.+-..|..+...
T Consensus 15 ~~V~~~~Wk~-laR~LGLse-~~I~~i~~~~~~~-~eq~~qmL~~W~~~~G~ 63 (96)
T cd08315 15 KEVPFDSWNR-LMRQLGLSE-NEIDVAKANERVT-REQLYQMLLTWVNKTGR 63 (96)
T ss_pred HHCCHHHHHH-HHHHcCCCH-HHHHHHHHHCCCC-HHHHHHHHHHHHHhhCC
Confidence 4455555555 889999975 7899888888877 66777777799877643
No 210
>PLN02248 cellulose synthase-like protein
Probab=21.47 E-value=73 Score=37.13 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=24.2
Q ss_pred CCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 36 ECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 36 ~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+|++..|+.|....+.. .-.||-|+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKS--GGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhc--CCCCCCCccccc
Confidence 78888999999988865 447999998874
No 211
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.29 E-value=52 Score=36.58 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=35.9
Q ss_pred ccccCcccccccccce---------ecCCCCCcc--------------------cHHHHHHHhhcc------CCCcccCC
Q 017653 17 ACMTCPLCSKLFRDAT---------TISECLHSF--------------------CRKCIYEKITEE------EIDSCPVC 61 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv---------~l~~CgHtF--------------------C~~CI~~~l~~~------~~~~CP~C 61 (368)
+.-+|+-|+.-+.+|- ..+.||..| |..|..++.... +-..||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 5568999988877752 223688777 999999876432 23689999
Q ss_pred CcccC
Q 017653 62 NTDLG 66 (368)
Q Consensus 62 r~~l~ 66 (368)
.-.+.
T Consensus 147 gp~l~ 151 (711)
T TIGR00143 147 GPQLN 151 (711)
T ss_pred CcEEE
Confidence 97664
No 212
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=21.26 E-value=32 Score=38.86 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=0.0
Q ss_pred cccCcccccccccceecCCCCC-----cccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTISECLH-----SFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgH-----tFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...||-|...-.....- .||- .+|..|-...- ...||.|.....
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp-~CG~~T~~~~~Cp~C~~~~~----~~~C~~C~~~~~ 703 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCP-ECGSHTEPVYVCPDCGIEVE----EDECPKCGRETT 703 (900)
T ss_dssp ------------------------------------------------------
T ss_pred cccCcccCCcchhhcCc-ccCCccccceeccccccccC----ccccccccccCc
Confidence 56899998876665544 5883 37999976433 237999987653
No 213
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.75 E-value=63 Score=28.40 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.3
Q ss_pred CCCcccCCCcccC
Q 017653 54 EIDSCPVCNTDLG 66 (368)
Q Consensus 54 ~~~~CP~Cr~~l~ 66 (368)
+.+.||.|+..+.
T Consensus 122 ~~f~Cp~Cg~~l~ 134 (147)
T smart00531 122 GTFTCPRCGEELE 134 (147)
T ss_pred CcEECCCCCCEEE
Confidence 4589999998763
No 214
>KOG2849 consensus Placental protein 11 [General function prediction only]
Probab=20.63 E-value=83 Score=32.26 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=42.7
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCccceEEE
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSAKDFVMV 358 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~~~~m~ 358 (368)
.||+---+.+.+..+..||+.| +..+...-|. ..-|+.+|+..= .|-...+|||+-|||.+
T Consensus 208 ~Fl~~vm~t~vmk~l~~fl~~k-~~~s~~~~~f------------~~~L~~LWF~~Y---sRg~g~~gSSgFEHVF~ 268 (388)
T KOG2849|consen 208 AFLDEVMTTRVMKELYRFLVHK-DVVSNSYNEF------------RRLLKELWFGLY---SRGKGPGGSSGFEHVFS 268 (388)
T ss_pred HHHHHHhhhHHHHHHHHHHHhc-CcCCCcHHHH------------HHHHHHhcceec---ccCCCCCCCccceEEEE
Confidence 5777657778888888888888 5544322222 344566998765 35577899999999985
No 215
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=20.53 E-value=27 Score=32.05 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=18.0
Q ss_pred CCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 54 EIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 54 ~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
..+.||.|+..+. ..++-..-..|.+.++.+
T Consensus 135 ~~F~Cp~Cg~~L~--~~dn~~~~~~l~~~I~~l 165 (178)
T PRK06266 135 YGFRCPQCGEMLE--EYDNSELIKELKEQIKEL 165 (178)
T ss_pred cCCcCCCCCCCCe--ecccHHHHHHHHHHHHHH
Confidence 4689999998774 333333334444444444
No 216
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=20.29 E-value=61 Score=27.34 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCchhhhhhhhc
Q 017653 294 SFIKRYIVKKLNLISEAEVEISLR 317 (368)
Q Consensus 294 ~~l~Kyl~~KL~l~~e~evei~c~ 317 (368)
.+|-|||++.|+++. ++|||.=+
T Consensus 53 ~~li~~Lak~~~v~k-S~V~ivsG 75 (102)
T COG1872 53 EELIKFLAKTFGVPK-SSVEIVSG 75 (102)
T ss_pred HHHHHHHHHHhCCCc-ccEEEEec
Confidence 688999999999988 68888543
Done!