Query 017653
Match_columns 368
No_of_seqs 244 out of 1254
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 9.3E-15 3.2E-19 116.5 6.0 76 11-89 6-82 (92)
2 3fl2_A E3 ubiquitin-protein li 99.5 1.1E-14 3.9E-19 122.6 6.6 76 12-91 46-121 (124)
3 2ckl_A Polycomb group ring fin 99.5 9.2E-15 3.2E-19 120.3 4.8 85 7-93 4-89 (108)
4 1t1h_A Gspef-atpub14, armadill 99.5 1.6E-14 5.4E-19 111.8 4.6 72 13-89 3-74 (78)
5 2ckl_B Ubiquitin ligase protei 99.5 2E-14 6.9E-19 126.8 5.3 92 7-101 43-134 (165)
6 2kre_A Ubiquitin conjugation f 99.5 3.7E-14 1.3E-18 116.4 6.2 74 11-90 22-95 (100)
7 1wgm_A Ubiquitin conjugation f 99.5 7.4E-14 2.5E-18 114.2 6.6 73 11-89 15-88 (98)
8 2kr4_A Ubiquitin conjugation f 99.4 3.6E-14 1.2E-18 112.9 4.3 73 11-89 7-79 (85)
9 1z6u_A NP95-like ring finger p 99.4 1.1E-13 3.9E-18 121.1 6.5 76 11-90 71-146 (150)
10 2yu4_A E3 SUMO-protein ligase 99.4 1.2E-13 4.1E-18 111.7 6.1 74 15-91 4-84 (94)
11 2y43_A E3 ubiquitin-protein li 99.4 2.5E-13 8.4E-18 109.9 5.9 75 10-89 14-88 (99)
12 3lrq_A E3 ubiquitin-protein li 99.4 2.8E-13 9.7E-18 110.3 4.2 75 8-86 12-86 (100)
13 3l11_A E3 ubiquitin-protein li 99.3 6.1E-14 2.1E-18 116.5 -0.5 78 12-91 9-90 (115)
14 1jm7_B BARD1, BRCA1-associated 99.3 4.2E-13 1.4E-17 112.1 3.8 72 10-88 14-85 (117)
15 2egp_A Tripartite motif-contai 99.3 5.7E-14 2E-18 108.4 -1.8 67 12-82 6-77 (79)
16 2c2l_A CHIP, carboxy terminus 99.3 6.9E-13 2.4E-17 124.2 5.1 71 14-89 204-274 (281)
17 2ecw_A Tripartite motif-contai 99.3 2.7E-13 9.2E-18 105.4 1.5 68 11-82 12-83 (85)
18 2ecv_A Tripartite motif-contai 99.3 3.5E-13 1.2E-17 104.8 1.1 68 11-82 12-83 (85)
19 2f42_A STIP1 homology and U-bo 99.3 1.8E-12 6.3E-17 117.0 5.7 72 12-88 100-171 (179)
20 2yur_A Retinoblastoma-binding 99.3 2.1E-12 7.2E-17 99.4 5.1 55 10-65 7-62 (74)
21 4ayc_A E3 ubiquitin-protein li 99.3 7.1E-13 2.4E-17 113.9 2.1 67 13-87 48-114 (138)
22 1jm7_A BRCA1, breast cancer ty 99.3 1.2E-12 4.3E-17 107.3 3.2 75 10-88 13-88 (112)
23 2csy_A Zinc finger protein 183 99.2 3.6E-12 1.2E-16 99.4 4.3 64 12-82 9-72 (81)
24 3htk_C E3 SUMO-protein ligase 99.2 3.6E-12 1.2E-16 121.0 4.5 76 10-88 173-250 (267)
25 2djb_A Polycomb group ring fin 99.2 8E-12 2.7E-16 95.4 5.5 55 10-66 7-61 (72)
26 2ct2_A Tripartite motif protei 99.2 3.3E-12 1.1E-16 100.3 3.4 67 9-76 6-77 (88)
27 3hct_A TNF receptor-associated 99.2 5.5E-12 1.9E-16 105.4 4.9 76 11-91 11-86 (118)
28 2ysl_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 94.0 5.2 55 11-66 13-68 (73)
29 3knv_A TNF receptor-associated 99.2 9.1E-12 3.1E-16 108.0 3.7 81 9-91 22-108 (141)
30 2ecy_A TNF receptor-associated 99.2 1.7E-11 5.8E-16 91.9 4.7 53 12-66 9-61 (66)
31 2ysj_A Tripartite motif-contai 99.2 2E-11 7E-16 90.5 4.6 50 11-61 13-63 (63)
32 1rmd_A RAG1; V(D)J recombinati 99.1 2.7E-11 9.1E-16 100.6 4.8 74 12-89 17-90 (116)
33 3hcs_A TNF receptor-associated 99.1 3.1E-11 1.1E-15 106.6 4.8 75 11-90 11-85 (170)
34 2ecj_A Tripartite motif-contai 99.1 6.8E-11 2.3E-15 85.7 4.3 50 11-61 8-58 (58)
35 1g25_A CDK-activating kinase a 99.0 1E-10 3.5E-15 87.3 4.2 48 17-66 2-54 (65)
36 2d8t_A Dactylidin, ring finger 99.0 8.4E-11 2.9E-15 89.4 3.1 50 14-66 11-60 (71)
37 3ng2_A RNF4, snurf, ring finge 99.0 1.3E-10 4.5E-15 87.6 3.3 49 15-66 7-62 (71)
38 2ea6_A Ring finger protein 4; 99.0 1.7E-10 5.8E-15 86.2 3.5 52 11-65 8-66 (69)
39 1e4u_A Transcriptional repress 99.0 4.8E-10 1.6E-14 87.9 5.4 52 13-66 6-61 (78)
40 1bor_A Transcription factor PM 98.9 2.2E-10 7.5E-15 83.7 1.8 45 16-66 4-48 (56)
41 2xeu_A Ring finger protein 4; 98.9 4.4E-10 1.5E-14 82.7 3.1 47 17-66 2-55 (64)
42 2ecn_A Ring finger protein 141 98.9 4.5E-10 1.5E-14 84.8 2.3 52 11-66 8-59 (70)
43 2ect_A Ring finger protein 126 98.9 8.8E-10 3E-14 84.9 3.7 53 11-66 8-63 (78)
44 1iym_A EL5; ring-H2 finger, ub 98.9 1.1E-09 3.9E-14 78.6 3.5 49 15-65 2-53 (55)
45 1chc_A Equine herpes virus-1 r 98.8 8.8E-10 3E-14 82.6 2.4 49 16-66 3-51 (68)
46 4ap4_A E3 ubiquitin ligase RNF 98.8 1.4E-09 4.9E-14 90.7 3.5 48 16-66 5-59 (133)
47 2ecm_A Ring finger and CHY zin 98.8 1.8E-09 6.2E-14 77.4 3.3 46 17-65 4-53 (55)
48 4ic3_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 84.4 2.1 49 11-66 17-66 (74)
49 2l0b_A E3 ubiquitin-protein li 98.8 2.8E-09 9.7E-14 85.1 3.4 49 14-65 36-87 (91)
50 2kiz_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 80.0 3.3 51 13-66 9-62 (69)
51 2ep4_A Ring finger protein 24; 98.8 3.3E-09 1.1E-13 80.8 3.1 54 11-66 8-63 (74)
52 1v87_A Deltex protein 2; ring- 98.7 4.5E-09 1.5E-13 86.6 3.7 49 17-66 24-93 (114)
53 1x4j_A Ring finger protein 38; 98.7 2.6E-09 9E-14 81.8 1.8 50 14-66 19-71 (75)
54 2ecg_A Baculoviral IAP repeat- 98.7 4.1E-09 1.4E-13 81.2 2.4 49 11-66 18-67 (75)
55 2bay_A PRE-mRNA splicing facto 98.6 1.3E-08 4.5E-13 76.0 2.7 47 18-66 3-49 (61)
56 2yho_A E3 ubiquitin-protein li 98.6 5E-09 1.7E-13 82.0 0.3 50 10-66 10-60 (79)
57 2y1n_A E3 ubiquitin-protein li 98.6 1.9E-08 6.6E-13 100.4 4.1 50 15-66 329-378 (389)
58 2ecl_A Ring-box protein 2; RNF 98.5 4.9E-08 1.7E-12 76.3 3.8 47 17-65 14-74 (81)
59 4ap4_A E3 ubiquitin ligase RNF 98.5 2.5E-08 8.5E-13 83.1 1.6 48 15-65 69-123 (133)
60 1wim_A KIAA0161 protein; ring 98.4 3E-08 1E-12 79.4 0.6 48 17-64 4-61 (94)
61 3t6p_A Baculoviral IAP repeat- 98.3 7.1E-08 2.4E-12 95.1 0.9 49 11-66 288-337 (345)
62 3dpl_R Ring-box protein 1; ubi 98.3 3.6E-07 1.2E-11 75.6 4.1 47 17-65 36-99 (106)
63 2vje_A E3 ubiquitin-protein li 98.3 2.7E-07 9.1E-12 69.1 2.5 48 16-65 6-55 (64)
64 2ea5_A Cell growth regulator w 98.2 4.5E-07 1.5E-11 68.9 2.7 45 15-66 12-57 (68)
65 2vje_B MDM4 protein; proto-onc 98.1 9.9E-07 3.4E-11 65.8 2.8 48 16-65 5-54 (63)
66 4a0k_B E3 ubiquitin-protein li 98.0 7.5E-07 2.6E-11 75.0 0.0 46 18-65 48-110 (117)
67 2d8s_A Cellular modulator of i 98.0 5.3E-06 1.8E-10 65.1 4.6 49 17-66 14-69 (80)
68 2ct0_A Non-SMC element 1 homol 97.6 7.9E-05 2.7E-09 57.7 5.6 51 16-66 13-63 (74)
69 3vk6_A E3 ubiquitin-protein li 97.4 0.0001 3.4E-09 60.3 3.7 46 20-66 3-48 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 96.7 0.001 3.6E-08 49.1 3.5 48 17-65 5-57 (60)
71 3m62_A Ubiquitin conjugation f 96.5 0.0021 7.1E-08 70.5 5.1 74 13-92 886-960 (968)
72 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.00091 3.1E-08 65.9 1.2 51 16-66 306-372 (381)
73 4gdk_A Ubiquitin-like protein 96.1 0.013 4.5E-07 46.9 6.9 72 275-364 15-87 (91)
74 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.003 1E-07 50.4 2.1 33 17-50 2-37 (101)
75 3nw0_A Non-structural maintena 95.6 0.014 4.9E-07 54.4 5.6 49 18-66 180-228 (238)
76 3w1s_C Ubiquitin-like protein 94.7 0.055 1.9E-06 43.3 5.9 68 275-363 18-86 (91)
77 3i2d_A E3 SUMO-protein ligase 94.6 0.026 8.9E-07 55.9 4.6 71 13-86 244-316 (371)
78 3rui_B Autophagy-related prote 94.4 0.1 3.6E-06 43.6 7.2 72 275-364 42-114 (118)
79 3h9d_A ATG8, microtubule-assoc 94.4 0.073 2.5E-06 44.6 6.2 73 275-364 43-115 (119)
80 4fo9_A E3 SUMO-protein ligase 94.2 0.043 1.5E-06 54.1 5.0 71 13-86 210-282 (360)
81 2r2q_A Gamma-aminobutyric acid 94.1 0.14 4.8E-06 42.2 7.3 71 275-362 39-109 (110)
82 1eo6_A GATE-16, golgi-associat 93.8 0.13 4.5E-06 42.8 6.7 71 276-364 41-112 (117)
83 3m95_A Autophagy related prote 93.7 0.14 4.7E-06 43.3 6.5 73 275-364 48-120 (125)
84 1wz3_A Autophagy 12B, ATG12B, 93.5 0.21 7.1E-06 40.3 7.1 67 260-336 14-81 (96)
85 2zjd_A Microtubule-associated 92.9 0.17 5.9E-06 43.0 6.0 71 275-363 48-120 (130)
86 3gs2_A E3 ubiquitin-protein li 92.5 0.25 8.6E-06 40.6 6.1 75 260-338 4-101 (111)
87 2cs3_A Protein C14ORF4, MY039 88.3 0.24 8.4E-06 38.8 2.4 44 16-60 13-63 (93)
88 2ko5_A Ring finger protein Z; 88.0 0.25 8.7E-06 39.8 2.4 51 11-65 21-71 (99)
89 3dbh_I NEDD8; cell cycle, acti 87.7 0.34 1.2E-05 36.8 3.0 46 283-330 26-71 (88)
90 2uyz_B Small ubiquitin-related 87.3 0.44 1.5E-05 35.6 3.4 46 283-330 17-62 (79)
91 3a9j_A Ubiquitin; protein comp 86.9 0.31 1.1E-05 35.6 2.3 46 283-330 14-59 (76)
92 3n3k_B Ubiquitin; hydrolase, p 86.9 0.29 9.8E-06 36.9 2.1 46 283-330 17-62 (85)
93 4eew_A Large proline-rich prot 86.5 0.39 1.3E-05 36.7 2.7 45 283-329 31-75 (88)
94 1wh3_A 59 kDa 2'-5'-oligoadeny 86.3 0.69 2.4E-05 35.1 4.1 46 283-330 21-66 (87)
95 4dwf_A HLA-B-associated transc 86.3 0.37 1.3E-05 37.0 2.5 46 283-330 19-64 (90)
96 3mtn_B UBA80, ubcep1, ubiquiti 86.2 0.39 1.3E-05 36.0 2.6 46 283-330 17-62 (85)
97 3phx_B Ubiquitin-like protein 85.9 0.52 1.8E-05 35.2 3.1 45 283-329 18-62 (79)
98 1ndd_A NEDD8, protein (ubiquit 85.8 0.46 1.6E-05 34.7 2.7 46 283-330 14-59 (76)
99 2dzi_A Ubiquitin-like protein 85.6 0.46 1.6E-05 35.4 2.6 46 283-330 21-66 (81)
100 2bwf_A Ubiquitin-like protein 85.6 0.44 1.5E-05 35.1 2.5 46 283-330 17-62 (77)
101 4hcn_B Polyubiquitin, ubiquiti 85.1 0.43 1.5E-05 37.6 2.4 46 283-330 36-81 (98)
102 1wx8_A Riken cDNA 4931431F19; 85.1 0.73 2.5E-05 35.9 3.7 46 283-330 30-75 (96)
103 3v6c_B Ubiquitin; structural g 84.5 0.61 2.1E-05 36.0 3.0 45 283-329 31-75 (91)
104 1wyw_B Ubiquitin-like protein 84.3 0.72 2.5E-05 36.3 3.4 61 258-330 20-80 (97)
105 2hj8_A Interferon-induced 17 k 84.3 1 3.6E-05 34.5 4.2 46 283-330 18-63 (88)
106 1wx7_A Ubiquilin 3; ubiquitin- 84.3 0.71 2.4E-05 36.9 3.3 46 283-330 30-75 (106)
107 3k9o_B Ubiquitin, UBB+1; E2-25 84.2 0.48 1.6E-05 36.7 2.3 46 283-330 15-60 (96)
108 4fbj_B NEDD8; effector-HOST ta 84.1 0.56 1.9E-05 36.2 2.6 46 283-330 14-59 (88)
109 2l7r_A Ubiquitin-like protein 83.8 0.93 3.2E-05 35.4 3.8 46 283-330 31-76 (93)
110 2kk8_A Uncharacterized protein 82.9 1.1 3.9E-05 34.3 3.9 46 283-330 24-70 (84)
111 2kan_A Uncharacterized protein 82.7 2.9 0.0001 32.7 6.3 64 254-330 10-74 (94)
112 1yx5_B Ubiquitin; proteasome, 82.4 0.64 2.2E-05 36.4 2.3 46 283-330 14-59 (98)
113 1wy8_A NP95-like ring finger p 82.1 1.2 4.3E-05 33.8 3.8 46 283-330 22-68 (89)
114 1yqb_A Ubiquilin 3; structural 81.1 1.2 4.2E-05 35.3 3.6 46 283-330 35-80 (100)
115 1weo_A Cellulose synthase, cat 80.7 1.7 5.8E-05 34.6 4.1 48 18-66 16-69 (93)
116 2kd0_A LRR repeats and ubiquit 80.4 0.91 3.1E-05 34.9 2.5 45 283-329 25-69 (85)
117 2fnj_B Transcription elongatio 80.2 1.4 4.7E-05 36.8 3.7 46 282-329 14-59 (118)
118 3a4r_A Nfatc2-interacting prot 80.0 1.6 5.4E-05 33.3 3.7 62 258-330 6-67 (79)
119 3m62_B UV excision repair prot 79.9 0.67 2.3E-05 37.2 1.6 46 283-330 15-60 (106)
120 3m63_B Ubiquitin domain-contai 79.6 0.78 2.7E-05 36.6 1.9 46 283-330 41-86 (101)
121 1sif_A Ubiquitin; hydrophobic 78.8 1.1 3.8E-05 34.4 2.6 46 283-330 23-68 (88)
122 2klc_A Ubiquilin-1; ubiquitin- 78.7 0.89 3.1E-05 36.1 2.0 46 283-330 38-83 (101)
123 2kdb_A Homocysteine-responsive 78.6 1.6 5.4E-05 34.9 3.5 47 283-330 39-86 (99)
124 2faz_A Ubiquitin-like containi 78.6 1.2 4.2E-05 32.9 2.7 45 283-329 17-62 (78)
125 1wgd_A Homocysteine-responsive 78.2 1.8 6E-05 33.5 3.6 45 284-330 24-70 (93)
126 3b1l_X E3 ubiquitin-protein li 79.1 0.47 1.6E-05 35.0 0.0 45 284-330 15-59 (76)
127 1j8c_A Ubiquitin-like protein 77.2 0.97 3.3E-05 37.6 1.9 46 283-330 45-90 (125)
128 1ttn_A DC-UBP, dendritic cell- 76.9 1.7 5.7E-05 34.7 3.2 46 283-330 37-82 (106)
129 3vdz_A Ubiquitin-40S ribosomal 76.2 1.9 6.5E-05 34.8 3.4 46 283-330 49-94 (111)
130 3plu_A Ubiquitin-like modifier 75.7 1.4 4.8E-05 35.3 2.3 44 284-329 36-79 (93)
131 1v5o_A 1700011N24RIK protein; 75.1 2.7 9.2E-05 33.2 3.9 45 284-330 26-71 (102)
132 4dbg_A Ranbp-type and C3HC4-ty 74.6 1.6 5.6E-05 35.5 2.6 45 283-329 40-84 (105)
133 1wju_A NEDD8 ultimate buster-1 74.2 2.4 8.2E-05 34.2 3.4 46 283-330 33-78 (100)
134 1x1m_A Ubiquitin-like protein 74.2 2.8 9.5E-05 33.5 3.8 41 290-330 44-86 (107)
135 2k8h_A Small ubiquitin protein 73.3 3.4 0.00012 33.8 4.2 62 258-331 25-86 (110)
136 1uh6_A Ubiquitin-like 5; beta- 73.3 2.7 9.2E-05 33.9 3.5 44 284-329 43-86 (100)
137 1wxv_A BAG-family molecular ch 72.9 2.5 8.4E-05 32.5 3.1 40 290-330 31-71 (92)
138 1we7_A SF3A1 protein; structur 72.7 2.5 8.6E-05 34.2 3.3 70 258-330 24-94 (115)
139 1wm3_A Ubiquitin-like protein 71.9 1.7 5.9E-05 32.3 1.9 46 283-330 15-60 (72)
140 2wyq_A HHR23A, UV excision rep 71.8 2.6 8.8E-05 31.6 2.9 46 283-330 19-67 (85)
141 2kdi_A Ubiquitin, vacuolar pro 71.1 2 6.9E-05 34.9 2.3 46 283-330 23-68 (114)
142 1v86_A DNA segment, CHR 7, way 69.9 5.4 0.00019 31.1 4.5 45 283-330 30-74 (95)
143 2ojr_A Ubiquitin; lanthide-bin 69.8 2.4 8.1E-05 34.1 2.4 46 283-330 49-94 (111)
144 1we6_A Splicing factor, putati 69.7 3.2 0.00011 33.3 3.2 45 284-330 45-90 (111)
145 3u5e_m 60S ribosomal protein L 69.4 0.96 3.3E-05 37.5 0.0 46 283-330 14-59 (128)
146 1wz0_A Ubiquitin-like protein 69.4 2.9 9.8E-05 33.8 2.8 62 258-331 23-84 (104)
147 3l0w_B Monoubiquitinated proli 67.0 3 0.0001 36.3 2.7 46 283-330 14-59 (169)
148 2daf_A FLJ35834 protein; hypot 65.4 4.3 0.00015 33.8 3.2 43 286-330 33-75 (118)
149 1uel_A HHR23B, UV excision rep 64.7 3.8 0.00013 31.8 2.6 46 283-330 14-62 (95)
150 2io1_B Small ubiquitin-related 64.2 2.6 9E-05 33.2 1.6 61 259-331 7-67 (94)
151 1z60_A TFIIH basal transcripti 64.2 5 0.00017 29.4 3.0 42 19-62 16-59 (59)
152 3q3f_A Ribonuclease/ubiquitin 63.4 4.3 0.00015 36.3 3.0 46 283-330 119-164 (189)
153 2io0_B Small ubiquitin-related 63.3 2.8 9.5E-05 33.0 1.6 47 283-331 19-65 (91)
154 3b08_A Polyubiquitin-C, ubiqui 62.9 3.9 0.00013 33.8 2.5 46 283-330 90-135 (152)
155 3rt3_B Ubiquitin-like protein 62.6 4.4 0.00015 34.1 2.9 46 283-330 95-140 (159)
156 3b08_A Polyubiquitin-C, ubiqui 62.2 4.1 0.00014 33.6 2.5 46 283-330 14-59 (152)
157 2lxa_A Ubiquitin-like protein 61.9 3.6 0.00012 32.0 2.0 42 288-330 21-63 (87)
158 4ajy_B Transcription elongatio 61.8 3.9 0.00014 34.0 2.3 45 283-329 15-59 (118)
159 3u30_A Ubiquitin, linear DI-ub 61.7 4.4 0.00015 34.7 2.7 46 283-330 34-79 (172)
160 1v5t_A 8430435I17RIK protein; 61.3 6.4 0.00022 30.3 3.3 44 285-330 23-69 (90)
161 2d07_B Ubiquitin-like protein 60.8 3.6 0.00012 32.3 1.8 61 258-330 16-76 (93)
162 3u5c_f 40S ribosomal protein S 59.3 1.9 6.7E-05 37.1 0.0 46 283-330 14-59 (152)
163 2jxx_A Nfatc2-interacting prot 58.7 7.5 0.00026 31.0 3.4 62 258-330 24-85 (97)
164 1wgg_A Ubiquitin carboxyl-term 57.5 6.2 0.00021 30.9 2.7 43 284-329 22-64 (96)
165 4a20_A Ubiquitin-like protein 57.0 4.3 0.00015 32.3 1.7 43 285-329 37-80 (98)
166 2l5y_A Stromal interaction mol 56.5 19 0.00065 31.1 5.8 50 287-338 28-77 (150)
167 3goe_A DNA repair protein RAD6 55.8 5.6 0.00019 31.0 2.1 47 283-330 23-69 (82)
168 3u30_A Ubiquitin, linear DI-ub 54.7 7.1 0.00024 33.4 2.8 46 282-329 109-154 (172)
169 3rt3_B Ubiquitin-like protein 54.6 7.6 0.00026 32.6 3.0 47 283-330 16-63 (159)
170 2eke_C Ubiquitin-like protein 53.1 5.2 0.00018 32.5 1.6 61 257-330 29-89 (106)
171 3kyd_D Small ubiquitin-related 52.7 5 0.00017 33.2 1.4 61 258-330 39-99 (115)
172 1x61_A Thyroid receptor intera 52.6 11 0.00039 27.1 3.3 35 17-52 32-67 (72)
173 3mjh_B Early endosome antigen 50.4 2.6 8.8E-05 27.6 -0.5 18 17-34 4-21 (34)
174 2lbm_A Transcriptional regulat 48.8 16 0.00053 31.3 4.0 46 17-63 62-116 (142)
175 1wia_A Hypothetical ubiquitin- 47.1 4.4 0.00015 31.2 0.3 43 283-330 21-64 (95)
176 1rut_X Flinc4, fusion protein 46.9 8.5 0.00029 33.6 2.1 46 17-65 31-79 (188)
177 2xqn_T Testin, TESS; metal-bin 46.8 11 0.00039 30.2 2.8 44 17-65 29-73 (126)
178 1m3v_A FLIN4, fusion of the LI 46.4 11 0.00037 30.5 2.5 47 17-66 31-80 (122)
179 2xzm_9 RPS31E; ribosome, trans 45.1 4.5 0.00015 36.3 0.0 44 283-328 14-57 (189)
180 1wgh_A Ubiquitin-like 3, HCG-1 44.8 11 0.00039 30.9 2.4 47 282-329 29-82 (116)
181 2kc2_A Talin-1, F1; FERM, adhe 43.2 13 0.00043 31.3 2.5 35 276-311 18-52 (128)
182 2gow_A HCG-1 protein, ubiquiti 43.1 10 0.00034 31.6 1.8 47 282-329 30-83 (125)
183 2l76_A Nfatc2-interacting prot 42.4 22 0.00076 28.4 3.7 47 282-330 33-79 (95)
184 2rgt_A Fusion of LIM/homeobox 42.3 23 0.00078 30.1 4.1 44 17-65 32-75 (169)
185 1wil_A KIAA1045 protein; ring 41.8 22 0.00074 28.0 3.4 51 11-63 8-75 (89)
186 3tix_A Ubiquitin-like protein 39.0 12 0.00041 33.9 1.8 48 282-331 69-116 (207)
187 3ai5_A Yeast enhanced green fl 38.8 16 0.00055 35.0 2.8 46 283-330 247-292 (307)
188 3pge_A SUMO-modified prolifera 38.6 13 0.00043 33.6 1.9 48 282-331 41-88 (200)
189 2cup_A Skeletal muscle LIM-pro 38.3 9.4 0.00032 29.4 0.9 45 17-65 32-76 (101)
190 2zet_C Melanophilin; complex, 37.4 4.3 0.00015 35.2 -1.4 46 17-63 67-116 (153)
191 2d8x_A Protein pinch; LIM doma 37.3 13 0.00045 26.6 1.5 35 17-51 30-64 (70)
192 2dar_A PDZ and LIM domain prot 36.5 19 0.00066 27.2 2.4 33 17-50 50-83 (90)
193 2l4z_A DNA endonuclease RBBP8, 36.2 22 0.00076 29.0 2.9 11 18-28 88-98 (123)
194 2xjy_A Rhombotin-2; oncoprotei 35.3 20 0.00069 28.8 2.5 46 17-65 28-76 (131)
195 2o35_A Hypothetical protein DU 34.7 14 0.00049 29.9 1.4 13 40-52 42-54 (105)
196 4g9i_A Hydrogenase maturation 33.8 39 0.0013 36.3 5.1 51 16-66 104-189 (772)
197 1v6e_A Cytoskeleton-associated 33.4 35 0.0012 26.2 3.5 44 283-328 22-72 (95)
198 2cur_A Skeletal muscle LIM-pro 33.4 26 0.00089 24.9 2.6 35 17-51 30-64 (69)
199 3fyb_A Protein of unknown func 33.3 16 0.00053 29.6 1.4 13 40-52 41-53 (104)
200 2dzm_A FAS-associated factor 1 32.7 46 0.0016 26.3 4.2 45 284-330 23-68 (100)
201 4b6w_A Tubulin-specific chaper 32.6 16 0.00055 28.1 1.4 44 284-328 19-68 (86)
202 2jtn_A LIM domain-binding prot 32.4 24 0.00081 30.4 2.6 44 17-65 86-129 (182)
203 1j0g_A Hypothetical protein 18 32.4 61 0.0021 25.3 4.6 65 260-332 11-75 (92)
204 1v2y_A 3300001G02RIK protein; 32.3 15 0.00052 29.6 1.2 45 284-329 22-81 (105)
205 2ct7_A Ring finger protein 31; 32.0 11 0.00039 28.9 0.4 30 20-49 27-61 (86)
206 3ttc_A HYPF, transcriptional r 31.0 22 0.00075 37.6 2.5 50 16-65 15-99 (657)
207 2d8z_A Four and A half LIM dom 30.2 27 0.00094 24.8 2.3 33 17-50 30-63 (70)
208 1x62_A C-terminal LIM domain p 29.5 22 0.00077 26.1 1.7 33 17-50 40-73 (79)
209 2kjr_A CG11242; UBL, ubiquitin 29.2 34 0.0012 26.7 2.8 67 253-329 9-81 (95)
210 1x4l_A Skeletal muscle LIM-pro 29.2 19 0.00065 25.9 1.2 34 17-50 34-67 (72)
211 2kj6_A Tubulin folding cofacto 28.8 42 0.0014 26.3 3.3 62 258-329 13-81 (97)
212 1nyp_A Pinch protein; LIM doma 28.7 19 0.00067 25.3 1.2 33 17-50 30-63 (66)
213 3vth_A Hydrogenase maturation 28.4 24 0.00083 37.9 2.3 49 17-65 110-193 (761)
214 2k60_A Protein (stromal intera 27.6 34 0.0012 29.5 2.7 49 288-338 29-77 (150)
215 2jmo_A Parkin; IBR, E3 ligase, 27.5 8.1 0.00028 29.5 -1.2 33 18-50 25-69 (80)
216 2d8y_A Eplin protein; LIM doma 26.1 42 0.0014 25.3 2.8 34 17-51 41-75 (91)
217 1zbd_B Rabphilin-3A; G protein 25.6 19 0.00064 30.3 0.7 47 17-63 54-106 (134)
218 1b8t_A Protein (CRP1); LIM dom 24.7 32 0.0011 29.9 2.0 35 17-51 33-67 (192)
219 2jne_A Hypothetical protein YF 24.7 5.8 0.0002 32.0 -2.5 41 18-66 32-72 (101)
220 1oqy_A HHR23A, UV excision rep 24.3 25 0.00085 34.5 1.4 46 283-330 21-69 (368)
221 1x63_A Skeletal muscle LIM-pro 24.0 35 0.0012 25.0 1.9 34 17-51 42-76 (82)
222 1x64_A Alpha-actinin-2 associa 23.9 25 0.00086 26.5 1.1 32 18-50 51-83 (89)
223 1wyh_A SLIM 2, skeletal muscle 23.7 31 0.0011 24.5 1.5 33 17-50 32-65 (72)
224 1dvp_A HRS, hepatocyte growth 23.3 22 0.00074 31.9 0.7 34 15-48 158-194 (220)
225 1x4k_A Skeletal muscle LIM-pro 23.3 31 0.0011 24.6 1.4 34 17-50 32-65 (72)
226 1iml_A CRIP, cysteine rich int 22.8 38 0.0013 24.5 1.9 43 17-64 26-70 (76)
227 3f6q_B LIM and senescent cell 22.8 30 0.001 24.4 1.3 32 17-49 38-70 (72)
228 3v7o_A Minor nucleoprotein VP3 22.7 18 0.00062 33.2 0.0 48 283-332 34-81 (227)
229 3ql9_A Transcriptional regulat 22.2 66 0.0022 26.9 3.4 46 17-63 56-110 (129)
230 3zyq_A Hepatocyte growth facto 21.7 27 0.00092 31.6 1.0 33 15-48 161-197 (226)
231 1wig_A KIAA1808 protein; LIM d 21.6 26 0.00088 25.5 0.7 34 17-51 30-65 (73)
232 2fiy_A Protein FDHE homolog; F 20.9 13 0.00045 35.6 -1.4 47 16-64 180-231 (309)
233 1b8t_A Protein (CRP1); LIM dom 20.6 72 0.0025 27.5 3.5 44 17-65 141-185 (192)
234 2pv0_B DNA (cytosine-5)-methyl 20.2 83 0.0029 31.1 4.2 28 36-63 112-147 (386)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.52 E-value=9.3e-15 Score=116.55 Aligned_cols=76 Identities=22% Similarity=0.534 Sum_probs=65.7
Q ss_pred chhcccccccCcccccccccceecCC-CCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISE-CLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~-CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
..+.+.+.++|+||+++|.+|+++ + |||+||..||..|+...+...||.|+..+ .....+.+|..|.++++.+...
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~--~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND--VSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS--CCTTSCEECHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC--CCccccCcCHHHHHHHHHHHHH
Confidence 446778899999999999999999 7 99999999999999765567899999876 2456889999999999998653
No 2
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=122.60 Aligned_cols=76 Identities=26% Similarity=0.591 Sum_probs=66.3
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccccc
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPSKR 91 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~~~ 91 (368)
...+++.++|+||+++|.+|+++ +|||+||..||..|+.. ....||.||..+. ....+.+|..|.++++.++|...
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRA-QVFSCPACRYDLG--RSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCCCHHHHHHHHHHSTTTT
T ss_pred HHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhH-CcCCCCCCCccCC--CCCCCCCCHHHHHHHHHHccccc
Confidence 45677889999999999999999 89999999999999973 4568999999873 33578999999999999999754
No 3
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.50 E-value=9.2e-15 Score=120.32 Aligned_cols=85 Identities=39% Similarity=0.777 Sum_probs=71.3
Q ss_pred chhcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCC-CCCCCCccchHHHHHHHH
Q 017653 7 TLKVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGC-APLEKLRADHNLQDLRIK 85 (368)
Q Consensus 7 ~v~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~-~~~~~lr~n~~L~~Lvek 85 (368)
.+++..+.+++.+.|+||.++|.+|+++.+|||+||..||..|+.. ...||.|+..+.. .+...+.+|..+.++++.
T Consensus 4 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~ 81 (108)
T 2ckl_A 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYK 81 (108)
T ss_dssp --CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHH
T ss_pred ccccchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHH
Confidence 4577888999999999999999999997689999999999999964 4789999998752 234478999999999999
Q ss_pred hccccccc
Q 017653 86 IFPSKRRN 93 (368)
Q Consensus 86 l~p~~~~k 93 (368)
+++...+.
T Consensus 82 ~~~~~~~~ 89 (108)
T 2ckl_A 82 LVPGLFKN 89 (108)
T ss_dssp HSTTHHHH
T ss_pred HhhhHHHH
Confidence 99865443
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.49 E-value=1.6e-14 Score=111.82 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=62.5
Q ss_pred hcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 13 EKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
..+.+.+.||||+++|.+|+++ +|||+||+.||..|+.. +...||.|+..+ ....+.+|..|.++++.+...
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~---~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA-GHKTCPKSQETL---LHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBC---SSCCCEECTTTHHHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHH-CcCCCCCCcCCC---ChhhCccCHHHHHHHHHHHHH
Confidence 3567899999999999999999 89999999999999964 467899999887 456789999999999988643
No 5
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.48 E-value=2e-14 Score=126.78 Aligned_cols=92 Identities=30% Similarity=0.657 Sum_probs=64.9
Q ss_pred chhcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 7 TLKVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 7 ~v~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
.+.+..+.+.+.+.|+||++.|.+|+++.+|||+||..||..|+.. +...||+|+..+. ....+.+|..|.++++.+
T Consensus 43 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 43 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLV--SKRSLRPDPNFDALISKI 119 (165)
T ss_dssp EEC----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCC--SGGGEEECHHHHHHHHHH
T ss_pred ccccchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCC--CcccCCcCHHHHHHHHHH
Confidence 3445667788899999999999999988789999999999999974 4678999998873 456789999999999999
Q ss_pred ccccccccCCCCCCC
Q 017653 87 FPSKRRNLDAPDSVS 101 (368)
Q Consensus 87 ~p~~~~ke~~~e~~~ 101 (368)
++.....+.+.+..+
T Consensus 120 ~~~~~~~~~~~e~~~ 134 (165)
T 2ckl_B 120 YPSRDEYEAHQERVL 134 (165)
T ss_dssp C--------------
T ss_pred HcchhHHHHHHHHHH
Confidence 997665555544433
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.47 E-value=3.7e-14 Score=116.43 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=64.4
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPSK 90 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~~ 90 (368)
....+.+.|.||||+++|.+||++ +|||+||+.||..|+. ....||.|+..+ ....+.+|..|.++++.+...+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~--~~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLL--NSPTDPFNRQTL---TESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTT--SCSBCSSSCCBC---CTTSSEECHHHHHHHHHHHHTT
T ss_pred hhccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHH--cCCCCCCCCCCC---ChhhceECHHHHHHHHHHHHHh
Confidence 344567899999999999999999 7999999999999996 357899999987 4578999999999999986543
No 7
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.45 E-value=7.4e-14 Score=114.20 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=64.0
Q ss_pred chhcccccccCcccccccccceecCCCC-CcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECL-HSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~Cg-HtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
....+.++|.||||+++|.+||++ +|| |+||+.||..|+.. ...||+|+..+ ....+.+|..|.++++.+...
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLS--DQTDPFNRSPL---TMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTT--SCBCTTTCSBC---CTTTSEECHHHHHHHHHHHHH
T ss_pred hhhcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHh--CCCCCCCCCCC---ChhhceEcHHHHHHHHHHHHH
Confidence 345667899999999999999999 899 99999999999964 56899999987 456899999999999998654
No 8
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.45 E-value=3.6e-14 Score=112.90 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=63.8
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
....+.+.|.||||+++|.+||++ +|||+||+.||..|+.. ...||+|+..+ ....+.+|..|.++++.+...
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLN--SPTDPFNRQML---TESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC---CGGGCEECHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhc--CCCCCCCcCCC---ChHhcchHHHHHHHHHHHHHH
Confidence 345567899999999999999999 79999999999999974 56899999887 456899999999999998654
No 9
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=121.15 Aligned_cols=76 Identities=30% Similarity=0.601 Sum_probs=65.3
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPSK 90 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~~ 90 (368)
....+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||+||..+.. ...+.+|..|+++++.+++..
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~--~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQ--NYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT--TCCCCBCHHHHHHHHHHSTTT
T ss_pred HHHhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHh-CCCcCCCCCccCCC--CCCCCCCHHHHHHHHHHhhHh
Confidence 345577889999999999999998 89999999999999974 45689999998742 237899999999999999864
No 10
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=111.68 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=62.3
Q ss_pred ccccccCcccccccccceecCCCCCcccHHHHHHHhhcc----CCCcccC--CCcc-cCCCCCCCCccchHHHHHHHHhc
Q 017653 15 LVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE----EIDSCPV--CNTD-LGCAPLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~----~~~~CP~--Cr~~-l~~~~~~~lr~n~~L~~Lvekl~ 87 (368)
..+.|.||||+++|.+||++..|||+||+.||..|+... +...||+ |+.. + ....+.+|..|.++++.+.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l---~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDI---RKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCB---CGGGEEECHHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccccc---CHhhCcCCHHHHHHHHHHH
Confidence 456899999999999999994499999999999999763 2468999 8865 4 4678999999999999996
Q ss_pred cccc
Q 017653 88 PSKR 91 (368)
Q Consensus 88 p~~~ 91 (368)
....
T Consensus 81 ~~~~ 84 (94)
T 2yu4_A 81 KKRH 84 (94)
T ss_dssp TTCC
T ss_pred HHhc
Confidence 6544
No 11
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=109.94 Aligned_cols=75 Identities=21% Similarity=0.500 Sum_probs=64.2
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
...+.+++.+.|+||.+.|.+|+++.+|||+||..||..|+.. ...||.|+..+ ....+.+|..+.++++.+...
T Consensus 14 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~---~~~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTV---TEPDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp GGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBC---CGGGCEECHHHHHHHHHHHHH
T ss_pred hHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcC---ChhhCCcCHHHHHHHHHHHHH
Confidence 3456778899999999999999988689999999999999963 47899999886 346789999999999988544
No 12
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=110.35 Aligned_cols=75 Identities=24% Similarity=0.487 Sum_probs=62.3
Q ss_pred hhcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 8 LKVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 8 v~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
.......+++.+.|+||+++|.+|+++.+|||+||..||..|+... ...||.||..+ ....+..+..+.++++.+
T Consensus 12 ~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~---~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 12 DEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPL---QLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBC---CGGGCEECTTHHHHHHHH
T ss_pred cccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcC---CHHHhHhhHHHHHHHHHH
Confidence 3456778889999999999999999933899999999999999753 36899999887 456777888887777665
No 13
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.35 E-value=6.1e-14 Score=116.47 Aligned_cols=78 Identities=17% Similarity=0.467 Sum_probs=65.1
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCC----CCCCCCccchHHHHHHHHhc
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGC----APLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~----~~~~~lr~n~~L~~Lvekl~ 87 (368)
...+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. +...||.|+..+.. .....+.+|..|.+++.+++
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred ccCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 45667789999999999999999 89999999999999854 46789999988642 12367789999999999999
Q ss_pred cccc
Q 017653 88 PSKR 91 (368)
Q Consensus 88 p~~~ 91 (368)
+...
T Consensus 87 p~~~ 90 (115)
T 3l11_A 87 PREC 90 (115)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 8643
No 14
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=4.2e-13 Score=112.09 Aligned_cols=72 Identities=24% Similarity=0.609 Sum_probs=62.8
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcc
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFP 88 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p 88 (368)
...+.+++.+.|+||+++|.+|+++.+|||+||..||..|+. ..||+|+..+ ....+.+|..|.++++.+..
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~---~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPA---WIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBC---SCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcC---ccccccccHHHHHHHHHHHH
Confidence 456778899999999999999999867999999999999985 6799999886 45688999999999987744
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.33 E-value=5.7e-14 Score=108.44 Aligned_cols=67 Identities=33% Similarity=0.776 Sum_probs=54.4
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhcc-----CCCcccCCCcccCCCCCCCCccchHHHHH
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE-----EIDSCPVCNTDLGCAPLEKLRADHNLQDL 82 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~-----~~~~CP~Cr~~l~~~~~~~lr~n~~L~~L 82 (368)
.+.+++.+.|+||++.|.+|+++ +|||+||..||..|+... ....||.|+..+ ....+++|..|+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~---~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY---SFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC---CSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC---CHhhCCcCHHHHHh
Confidence 45678899999999999999998 899999999999998652 267899999886 34566677665443
No 16
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.33 E-value=6.9e-13 Score=124.18 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=61.6
Q ss_pred cccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 14 KLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
.+.+.|.||||+++|.+||++ +|||+||+.||..|+... ...||+|+..+ ....+.+|..|.++++.+...
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~---~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRV-GHFNPVTRSPL---TQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHT-CSSCTTTCCCC---CGGGCEECHHHHHHHHHHHTT
T ss_pred CCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHC-CCCCcCCCCCC---chhcCcccHHHHHHHHHHHHH
Confidence 455789999999999999999 799999999999999753 34499999887 456899999999999998654
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=2.7e-13 Score=105.40 Aligned_cols=68 Identities=29% Similarity=0.762 Sum_probs=55.6
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhcc----CCCcccCCCcccCCCCCCCCccchHHHHH
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE----EIDSCPVCNTDLGCAPLEKLRADHNLQDL 82 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~----~~~~CP~Cr~~l~~~~~~~lr~n~~L~~L 82 (368)
..+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+... ....||.|+..+ ....+.+|..|+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY---PFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC---CTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC---CHHhCCcCHHHHHh
Confidence 456678899999999999999988 899999999999999763 267899999886 34566777665544
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.5e-13 Score=104.75 Aligned_cols=68 Identities=26% Similarity=0.698 Sum_probs=55.3
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhc----cCCCcccCCCcccCCCCCCCCccchHHHHH
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITE----EEIDSCPVCNTDLGCAPLEKLRADHNLQDL 82 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~----~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~L 82 (368)
..+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. .+...||.|+..+ ....+.+|..|+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY---QPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS---CSSSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc---CHHhcCccHHHHHh
Confidence 346678899999999999999998 89999999999999875 2367899999886 34566677665443
No 19
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.29 E-value=1.8e-12 Score=116.99 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=62.8
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcc
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFP 88 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p 88 (368)
...+.+.|.||||+++|.+||++ +|||+||+.||..|+...+ ..||+|+..+ ....+.+|..|.++++.+..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l---~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-HFDPVTRSPL---TQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-SBCTTTCCBC---CGGGCEECHHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCC-CCCCCCcCCC---ChhhCcchHHHHHHHHHHHH
Confidence 45567899999999999999999 8999999999999997633 3699999887 45689999999999998854
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=99.39 Aligned_cols=55 Identities=25% Similarity=0.703 Sum_probs=48.3
Q ss_pred cchhcccccccCcccccccccceecCC-CCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISE-CLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~-CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
...+.+.+.+.|+||+++|.+|+++ + |||+||..||..|+...+...||+||..+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cccccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3456788899999999999999998 6 99999999999999865557899999864
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=7.1e-13 Score=113.89 Aligned_cols=67 Identities=31% Similarity=0.647 Sum_probs=51.7
Q ss_pred hcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhc
Q 017653 13 EKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~ 87 (368)
+.++++++|+||++.|.+|+++ +|||+||..||..|+.. ...||+||..+.. ...+..+..+++.+.
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~-----~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR--KIECPICRKDIKS-----KTYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT--CSBCTTTCCBCCC-----EEECHHHHHHHHHHH
T ss_pred HhccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHc--CCcCCCCCCcCCC-----CCCccchhHHHHHHH
Confidence 4466789999999999999999 89999999999999953 5679999987642 123444455555443
No 22
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=1.2e-12 Score=107.35 Aligned_cols=75 Identities=20% Similarity=0.623 Sum_probs=59.9
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhcc-CCCcccCCCcccCCCCCCCCccchHHHHHHHHhcc
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE-EIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFP 88 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~-~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p 88 (368)
...+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+... +...||.|+..+. ...+..|..+.++++.+..
T Consensus 13 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~---~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 13 NVINAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT---KRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC---TTTCBCCCSSSHHHHHHHH
T ss_pred HHHHhccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC---HhhcCccHHHHHHHHHHHH
Confidence 3455677889999999999999998 899999999999999753 2368999998874 4566677776677766654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=99.35 Aligned_cols=64 Identities=22% Similarity=0.568 Sum_probs=52.1
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHH
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDL 82 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~L 82 (368)
.+..++.+.|+||++.|.+|+++ +|||+||..||..|+.. ...||+|+..+. ..+.++..+.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~----~~~~~~~~l~~~ 72 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRA--TPRCYICDQPTG----GIFNPAKELMAK 72 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHH--CSBCSSSCCBCC----SCCEECHHHHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHC--CCcCCCcCcccc----ccCCcHHHHHHH
Confidence 45667789999999999999998 89999999999999964 568999998863 456677544333
No 24
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.23 E-value=3.6e-12 Score=121.02 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=65.2
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccC--CCcccCCCCCCCCccchHHHHHHHHhc
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPV--CNTDLGCAPLEKLRADHNLQDLRIKIF 87 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~--Cr~~l~~~~~~~lr~n~~L~~Lvekl~ 87 (368)
+........++||||+++|.+||+...|||+||+.||..|+...+...||+ |+..+ ....+.+|..|.++++.+.
T Consensus 173 I~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l---~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 173 LQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV---SMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp CCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE---CGGGEEECHHHHHHHHHHH
T ss_pred ceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC---chhhCCcCHHHHHHHHHHH
Confidence 344557788999999999999998658999999999999997655678999 99876 6778999999999998764
Q ss_pred c
Q 017653 88 P 88 (368)
Q Consensus 88 p 88 (368)
.
T Consensus 250 ~ 250 (267)
T 3htk_C 250 M 250 (267)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8e-12 Score=95.39 Aligned_cols=55 Identities=38% Similarity=0.828 Sum_probs=48.6
Q ss_pred cchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...+.+++.+.|+||++.+.+|+++.+|||+||..||..|+.. ...||+|+..+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 61 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccC
Confidence 4567788899999999999999997789999999999999964 568999998874
No 26
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.3e-12 Score=100.26 Aligned_cols=67 Identities=24% Similarity=0.627 Sum_probs=53.3
Q ss_pred hcchhcccccccCccccccccc----ceecCCCCCcccHHHHHHHhhcc-CCCcccCCCcccCCCCCCCCccc
Q 017653 9 KVNREKLVACMTCPLCSKLFRD----ATTISECLHSFCRKCIYEKITEE-EIDSCPVCNTDLGCAPLEKLRAD 76 (368)
Q Consensus 9 ~v~~~~l~e~L~CpIC~~l~~d----Pv~l~~CgHtFC~~CI~~~l~~~-~~~~CP~Cr~~l~~~~~~~lr~n 76 (368)
....+.+++.+.|+||++.|.+ |+.+ +|||+||..||..|+... ....||.||..+.......+..|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n 77 (88)
T 2ct2_A 6 SGNLDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDN 77 (88)
T ss_dssp CCSCCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEEC
T ss_pred ccChhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHH
Confidence 3456778889999999999999 9998 899999999999999753 24789999988754333444444
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.23 E-value=5.5e-12 Score=105.41 Aligned_cols=76 Identities=26% Similarity=0.476 Sum_probs=63.4
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPSK 90 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~~ 90 (368)
-.+.+.+.+.|+||++++.+|+++ +|||+||..||..|+... ...||+|+..+ ....+.++..+.+++..+....
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~---~~~~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDA-GHKCPVDNEIL---LENQLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH-CSBCTTTCCBC---CGGGCEECHHHHHHHHTSEEEC
T ss_pred hccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhC-CCCCCCCCCCc---CHHhcccCHHHHHHHccceeEC
Confidence 356788899999999999999998 899999999999999753 34899999887 3456778989999888876544
Q ss_pred c
Q 017653 91 R 91 (368)
Q Consensus 91 ~ 91 (368)
.
T Consensus 86 ~ 86 (118)
T 3hct_A 86 P 86 (118)
T ss_dssp S
T ss_pred C
Confidence 3
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=94.04 Aligned_cols=55 Identities=33% Similarity=0.724 Sum_probs=47.4
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhc-cCCCcccCCCcccC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITE-EEIDSCPVCNTDLG 66 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~-~~~~~CP~Cr~~l~ 66 (368)
..+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. .....||+|+..+.
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 446678899999999999999999 89999999999999963 24568999998763
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.17 E-value=9.1e-12 Score=107.99 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=63.0
Q ss_pred hcchhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCC------CCCCCccchHHHHH
Q 017653 9 KVNREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCA------PLEKLRADHNLQDL 82 (368)
Q Consensus 9 ~v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~------~~~~lr~n~~L~~L 82 (368)
.+-.+.+++.+.|+||+++|.+|+++ +|||+||..||..|+.. +...||+||..+... ....+.++..+...
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~ 99 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSS-GPQNCAACVHEGIYEEGISILESSSAFPDNAARRE 99 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGG-SCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhc-CCCCCCCCCCcccccccccccchhhhcccHHHHHH
Confidence 44557889999999999999999998 89999999999999964 456899999865211 12345578888888
Q ss_pred HHHhccccc
Q 017653 83 RIKIFPSKR 91 (368)
Q Consensus 83 vekl~p~~~ 91 (368)
+..+.....
T Consensus 100 i~~L~v~Cp 108 (141)
T 3knv_A 100 VESLPAVCP 108 (141)
T ss_dssp HHTSEEECC
T ss_pred HcccccccC
Confidence 877755443
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=91.89 Aligned_cols=53 Identities=19% Similarity=0.550 Sum_probs=46.2
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. ....||+|+..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSS-SSPKCTACQESIV 61 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTT-SSCCCTTTCCCCC
T ss_pred hhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHh-CcCCCCCCCcCCC
Confidence 45667889999999999999998 89999999999999963 4578999998763
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2e-11 Score=90.52 Aligned_cols=50 Identities=34% Similarity=0.786 Sum_probs=43.9
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhcc-CCCcccCC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEE-EIDSCPVC 61 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~-~~~~CP~C 61 (368)
..+.+++.+.|+||++.+.+|+++ +|||+||..||..|+... ....||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456788899999999999999999 899999999999999742 35689998
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=2.7e-11 Score=100.60 Aligned_cols=74 Identities=19% Similarity=0.462 Sum_probs=58.7
Q ss_pred hhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccc
Q 017653 12 REKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPS 89 (368)
Q Consensus 12 ~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~ 89 (368)
.+.+.+.+.|+||.+.+.+|+++ +|||+||..||..|+.. ....||.|+..+... .-...+..+.+++..+...
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~--~~~~~~~~l~~~i~~l~v~ 90 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKV-MGSYCPSCRYPCFPT--DLESPVKSFLNILNSLMVK 90 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGG--GCBCCCHHHHHHHHHCEEE
T ss_pred HHhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHh--hccccHHHHHHHHHHhcCC
Confidence 35677889999999999999998 89999999999999975 356799999987422 2234577777777776554
No 33
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.12 E-value=3.1e-11 Score=106.61 Aligned_cols=75 Identities=27% Similarity=0.487 Sum_probs=62.4
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhcccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPSK 90 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~~ 90 (368)
-.+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||.|+..+ ....+.++..+.+++..+....
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~---~~~~~~~~~~~~~~i~~l~v~C 85 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRD-AGHKCPVDNEIL---LENQLFPDNFAKREILSLMVKC 85 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-HCSBCTTTCCBC---CGGGCEECHHHHHHHHTSEEEC
T ss_pred hccCCCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHh-CCCCCCCCccCc---chhhhhhhHHHHHHHhhcccCC
Confidence 345788999999999999999998 89999999999999975 334899999887 3456778888888888776544
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.8e-11 Score=85.73 Aligned_cols=50 Identities=34% Similarity=0.783 Sum_probs=43.2
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhc-cCCCcccCC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITE-EEIDSCPVC 61 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~-~~~~~CP~C 61 (368)
..+.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. .....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456677899999999999999998 89999999999999753 346789988
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=1e-10 Score=87.33 Aligned_cols=48 Identities=27% Similarity=0.696 Sum_probs=40.9
Q ss_pred ccccCccccc-ccccce----ecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 17 ACMTCPLCSK-LFRDAT----TISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 17 e~L~CpIC~~-l~~dPv----~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+++.|+||++ ++.+|+ .+ +|||+||..||..|+.. +...||.|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 3689999999 999994 45 89999999999999764 4578999998874
No 36
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.4e-11 Score=89.41 Aligned_cols=50 Identities=18% Similarity=0.537 Sum_probs=43.6
Q ss_pred cccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 14 KLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...+.+.|+||++.+.+|+++ +|||.||..||..|+.. ...||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL--GKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC--SSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC--CCcCcCcCchhC
Confidence 345678999999999999999 89999999999999864 478999998763
No 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.01 E-value=1.3e-10 Score=87.60 Aligned_cols=49 Identities=24% Similarity=0.869 Sum_probs=42.5
Q ss_pred ccccccCcccccccccc-------eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 15 LVACMTCPLCSKLFRDA-------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dP-------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+.+.|+||++.+.+| +.+ +|||+||..||..|+.. ...||+||..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc--CCCCCCCCCccC
Confidence 45679999999999998 666 89999999999999965 468999998874
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=86.22 Aligned_cols=52 Identities=23% Similarity=0.813 Sum_probs=44.8
Q ss_pred chhcccccccCcccccccccc-------eecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 11 NREKLVACMTCPLCSKLFRDA-------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dP-------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
..+.+.+.+.|+||++.+.+| +.+ +|||.||..||..|+.. ...||+||..+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 66 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH--CSSCTTTCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc--CCCCCCCCCcc
Confidence 345677889999999999988 666 89999999999999965 56799999876
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=4.8e-10 Score=87.91 Aligned_cols=52 Identities=27% Similarity=0.570 Sum_probs=42.2
Q ss_pred hcccccccCcccccccc--cceecCC--CCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 13 EKLVACMTCPLCSKLFR--DATTISE--CLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~--dPv~l~~--CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+++.++||||++.+. +++++ + |||+||+.|+..++.. ....||.||..+.
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTD-ENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCS
T ss_pred cccccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccC
Confidence 45678999999999884 44444 4 9999999999998854 5688999998874
No 40
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=2.2e-10 Score=83.71 Aligned_cols=45 Identities=22% Similarity=0.668 Sum_probs=39.3
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.+.++|+||++.|.+|+++ +|||+||..||.. ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEA-----SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEc-CCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence 5679999999999999998 8999999999876 3467999998764
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.92 E-value=4.4e-10 Score=82.74 Aligned_cols=47 Identities=28% Similarity=0.940 Sum_probs=41.0
Q ss_pred ccccCcccccccccc-------eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 17 ACMTCPLCSKLFRDA-------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 17 e~L~CpIC~~l~~dP-------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+.+.|+||++.+.+| +.+ +|||.||..||..|+.. ...||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc--CCCCCCCCccCC
Confidence 468999999999988 666 89999999999999965 568999998763
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=4.5e-10 Score=84.77 Aligned_cols=52 Identities=29% Similarity=0.659 Sum_probs=44.9
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+.+.+.+.|+||++.+.+ +.+ +|||.||..||..|+. ....||+||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSD--RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred hhhcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHH--CcCcCCCcCCccc
Confidence 44567788999999999999 777 8999999999999985 4678999998774
No 43
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.88 E-value=8.8e-10 Score=84.87 Aligned_cols=53 Identities=30% Similarity=0.713 Sum_probs=43.5
Q ss_pred chhcccccccCcccccccccc---eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 11 NREKLVACMTCPLCSKLFRDA---TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dP---v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+.+.+.+.|+||++.|.++ +.+ +|+|.||..||..|+.. ...||+||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 63 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQ--HDSCPVCRKSLT 63 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTT--TCSCTTTCCCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHc--CCcCcCcCCccC
Confidence 345667789999999999865 334 89999999999999954 468999998874
No 44
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.86 E-value=1.1e-09 Score=78.60 Aligned_cols=49 Identities=22% Similarity=0.617 Sum_probs=41.4
Q ss_pred ccccccCccccccccc---ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 15 LVACMTCPLCSKLFRD---ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 15 l~e~L~CpIC~~l~~d---Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+++...|+||++.|.+ ++.+..|||.||..||..|+.. ...||+||..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 5677899999999987 6777349999999999999954 56799999765
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.84 E-value=8.8e-10 Score=82.56 Aligned_cols=49 Identities=29% Similarity=0.718 Sum_probs=41.0
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
++...|+||++.+.+|+.+.+|||.||..||..|+.. ...||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence 3467899999999998544489999999999999964 468999998763
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.83 E-value=1.4e-09 Score=90.73 Aligned_cols=48 Identities=25% Similarity=0.903 Sum_probs=42.4
Q ss_pred cccccCcccccccccc-------eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDA-------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dP-------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.+.+.|+||++.|.+| +.+ +|||+||..||.+|+.. ...||+|+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT--CSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh--CCCCCCCCCcCc
Confidence 4679999999999999 777 89999999999999964 468999998874
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.82 E-value=1.8e-09 Score=77.38 Aligned_cols=46 Identities=28% Similarity=0.663 Sum_probs=39.1
Q ss_pred ccccCccccccccc----ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRD----ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~d----Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+...|+||++.|.+ ++.+ +|||.||..||..|+... ..||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEG--YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcC--CcCCCCCCcC
Confidence 46789999999866 5555 899999999999999763 7899999765
No 48
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.81 E-value=1.1e-09 Score=84.44 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=43.0
Q ss_pred chhcccccccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCcccC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+.+++.+.|+||++.+.+|+++ +|||. ||..|+..| ..||+||..+.
T Consensus 17 ~~~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 17 QLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVIT 66 (74)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC------SBCTTTCCBCS
T ss_pred HHhcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC------ccCCCcCcCcc
Confidence 456677889999999999999999 89999 999999876 56999998763
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.77 E-value=2.8e-09 Score=85.06 Aligned_cols=49 Identities=29% Similarity=0.713 Sum_probs=41.5
Q ss_pred cccccccCccccccccc---ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 14 KLVACMTCPLCSKLFRD---ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~d---Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
...+...|+||++.|.. ++.+ +|||.||..||..|+.. ...||+||..+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~ 87 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK--SGTCPVCRCMF 87 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT--TCBCTTTCCBS
T ss_pred ccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc--CCcCcCcCccC
Confidence 34567899999999877 7777 79999999999999964 46899999876
No 50
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.77 E-value=3e-09 Score=79.96 Aligned_cols=51 Identities=22% Similarity=0.662 Sum_probs=41.3
Q ss_pred hcccccccCcccccccc---cceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 13 EKLVACMTCPLCSKLFR---DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+...+...|+||++.|. .++.+ +|||.||..||..|+.. ...||+||..+.
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLIT--NKKCPICRVDIE 62 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCSBSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHc--CCCCcCcCcccc
Confidence 44566789999999885 34556 89999999999999975 356999998764
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.3e-09 Score=80.80 Aligned_cols=54 Identities=26% Similarity=0.616 Sum_probs=43.4
Q ss_pred chhcccccccCcccccccccceec--CCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTI--SECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l--~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
....+.+...|+||++.|.++..+ .+|+|.||..||..|+.. ...||+||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVL 63 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCS
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCcccc
Confidence 345667789999999999765332 279999999999999975 347999998874
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.74 E-value=4.5e-09 Score=86.58 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=40.0
Q ss_pred ccccCcccccccccce------------------ecCCCCCcccHHHHHHHhhc---cCCCcccCCCcccC
Q 017653 17 ACMTCPLCSKLFRDAT------------------TISECLHSFCRKCIYEKITE---EEIDSCPVCNTDLG 66 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv------------------~l~~CgHtFC~~CI~~~l~~---~~~~~CP~Cr~~l~ 66 (368)
....|+||++.|.+|. .+ +|+|.||..||..|+.. .....||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3469999999997764 44 89999999999999954 23578999998774
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=2.6e-09 Score=81.77 Aligned_cols=50 Identities=26% Similarity=0.637 Sum_probs=41.9
Q ss_pred cccccccCcccccccccc---eecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 14 KLVACMTCPLCSKLFRDA---TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 14 ~l~e~L~CpIC~~l~~dP---v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...+...|+||++.|.++ +.+ +|+|.||..||..|+.. ...||+||..+.
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKA--NRTCPICRADSG 71 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHH--CSSCTTTCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHc--CCcCcCcCCcCC
Confidence 345678999999999887 566 89999999999999965 467999998763
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.1e-09 Score=81.21 Aligned_cols=49 Identities=24% Similarity=0.591 Sum_probs=41.7
Q ss_pred chhcccccccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCcccC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+.+++.+.|+||++.+.+|+++ +|||. ||..|+.. ...||+||..+.
T Consensus 18 ~~~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~------~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 18 QLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEA------VDKCPMCYTVIT 67 (75)
T ss_dssp HHHHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHH------CSBCTTTCCBCC
T ss_pred HHHcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhC------CCCCccCCceec
Confidence 445667889999999999999998 89999 99999953 256999998764
No 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.62 E-value=1.3e-08 Score=76.05 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=41.0
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.|.||||++++.+||++..|||+||+.||.+|+... ..||+++..+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCC
Confidence 589999999999999885799999999999999764 35999998873
No 56
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.61 E-value=5e-09 Score=82.00 Aligned_cols=50 Identities=30% Similarity=0.642 Sum_probs=42.9
Q ss_pred cchhcccccccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCcccC
Q 017653 10 VNREKLVACMTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 10 v~~~~l~e~L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
-..+.+++...|+||++.+.+++.+ +|||. ||..|+..+ ..||+||..+.
T Consensus 10 ~~~~~l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 60 (79)
T 2yho_A 10 EKLRKLKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL------QSCPVCRSRVE 60 (79)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC------SBCTTTCCBCC
T ss_pred HHHHcCCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc------CcCCCCCchhh
Confidence 3456677889999999999999999 89999 999998754 37999998875
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.59 E-value=1.9e-08 Score=100.43 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=43.2
Q ss_pred ccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 15 LVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.+....|+||.+.+.+|+.+ +|||.||..|+..|+.. ....||.||..+.
T Consensus 329 ~~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES-EGQGCPFCRCEIK 378 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHH-TCSBCTTTCCBCC
T ss_pred cCCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhc-CCCCCCCCCCccC
Confidence 34458999999999999999 89999999999999863 4578999998764
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=4.9e-08 Score=76.34 Aligned_cols=47 Identities=32% Similarity=0.751 Sum_probs=38.9
Q ss_pred ccccCccccccccc--------------ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRD--------------ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~d--------------Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+...|+||++.|.+ ++.+..|+|.||..||..|+.. ...||+||..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCc
Confidence 46779999999976 4555469999999999999965 45899999876
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.50 E-value=2.5e-08 Score=83.11 Aligned_cols=48 Identities=25% Similarity=0.870 Sum_probs=41.8
Q ss_pred ccccccCcccccccccc-------eecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 15 LVACMTCPLCSKLFRDA-------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dP-------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
..+.+.|+||++.|.++ +.+ +|||.||..||..|+.. ...||+||..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 123 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 123 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc--CCCCCCCCCcC
Confidence 35678999999999987 777 89999999999999964 56899999876
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=3e-08 Score=79.38 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=39.6
Q ss_pred ccccCcccccccccceec--CCCCCcccHHHHHHHhhcc---C---CCcccC--CCcc
Q 017653 17 ACMTCPLCSKLFRDATTI--SECLHSFCRKCIYEKITEE---E---IDSCPV--CNTD 64 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l--~~CgHtFC~~CI~~~l~~~---~---~~~CP~--Cr~~ 64 (368)
+.++|+||++.+..|.++ .+|||.||..||..++... + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468999999999988765 3699999999999998642 2 368999 9976
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=7.1e-08 Score=95.06 Aligned_cols=49 Identities=24% Similarity=0.550 Sum_probs=42.6
Q ss_pred chhcccccccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCcccC
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
....+++.+.|+||++.+.+|+.+ +|||. ||..|+..+ ..||+||..+.
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~------~~CP~CR~~i~ 337 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL------RKCPICRGIIK 337 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC------SBCTTTCCBCC
T ss_pred HHHhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC------CcCCCCCCCcc
Confidence 355677889999999999999999 89999 999999765 56999998763
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.31 E-value=3.6e-07 Score=75.56 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=38.9
Q ss_pred ccccCcccccccccc-----------------eecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDA-----------------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dP-----------------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.-.|+||++.|.++ +.+.+|+|.|+..||..|+.. ...||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence 456899999998865 444489999999999999964 57899999875
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.28 E-value=2.7e-07 Score=69.14 Aligned_cols=48 Identities=21% Similarity=0.480 Sum_probs=40.1
Q ss_pred cccccCcccccccccceec-CCCCCc-ccHHHHHHHhhccCCCcccCCCccc
Q 017653 16 VACMTCPLCSKLFRDATTI-SECLHS-FCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l-~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.+...|+||++.+.+++.+ .+|||. ||..|+..+... ...||+||..+
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcch
Confidence 3567899999999999864 279999 899999998853 46799999876
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=4.5e-07 Score=68.89 Aligned_cols=45 Identities=20% Similarity=0.580 Sum_probs=38.5
Q ss_pred ccccccCcccccccccceecCCCCCc-ccHHHHHHHhhccCCCcccCCCcccC
Q 017653 15 LVACMTCPLCSKLFRDATTISECLHS-FCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 15 l~e~L~CpIC~~l~~dPv~l~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
..+...|+||++.+.+++.+ +|||. ||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~------~~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY------FQQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH------CSSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc------CCCCCCCCcchh
Confidence 34578999999999999998 89999 99999973 256999998764
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.13 E-value=9.9e-07 Score=65.80 Aligned_cols=48 Identities=29% Similarity=0.567 Sum_probs=39.5
Q ss_pred cccccCcccccccccceec-CCCCCc-ccHHHHHHHhhccCCCcccCCCccc
Q 017653 16 VACMTCPLCSKLFRDATTI-SECLHS-FCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l-~~CgHt-FC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+....|+||++.+.+++.+ .+|||. ||..|+..+... ...||+||..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchh
Confidence 3456899999999998653 479998 999999988753 46899999876
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.01 E-value=7.5e-07 Score=75.00 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=0.4
Q ss_pred cccCcccccccccc-----------------eecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 18 CMTCPLCSKLFRDA-----------------TTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 18 ~L~CpIC~~l~~dP-----------------v~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
.-.|+||++.|.++ +++.+|+|.|+..||..|+.. ...||+||..+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 110 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence 35899999999763 333479999999999999965 56799999765
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=5.3e-06 Score=65.12 Aligned_cols=49 Identities=16% Similarity=0.413 Sum_probs=40.8
Q ss_pred ccccCccccccc--ccceecCCCC-----CcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 17 ACMTCPLCSKLF--RDATTISECL-----HSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 17 e~L~CpIC~~l~--~dPv~l~~Cg-----HtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+...|.||++.+ .+++++ +|. |.|...||.+|+...+...||+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 457899999877 467766 896 9999999999998765678999998874
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=7.9e-05 Score=57.74 Aligned_cols=51 Identities=20% Similarity=0.441 Sum_probs=41.7
Q ss_pred cccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
+..-.|.||..++..-..-..|+|.|-..||.+|+.......||.|+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345689999999976555557999999999999997655578999998764
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.40 E-value=0.0001 Score=60.28 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=37.4
Q ss_pred cCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 20 TCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 20 ~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.|++|.-.+..-..+.+|.|.||..|+..|... +...||.|+..+.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeee
Confidence 689998888765555599999999999988754 5678999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.72 E-value=0.001 Score=49.11 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=39.2
Q ss_pred ccccCcccccccccceecCCCCC-----cccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLH-----SFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgH-----tFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.-.|.||+.-..++... +|.+ .|-..|+.+|+...+...||+|+..+
T Consensus 5 ~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 456899999877777755 7653 79999999999876678999999876
No 71
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.46 E-value=0.0021 Score=70.54 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=63.3
Q ss_pred hcccccccCcccccccccceecCCCC-CcccHHHHHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHhccccc
Q 017653 13 EKLVACMTCPLCSKLFRDATTISECL-HSFCRKCIYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKIFPSKR 91 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~~Cg-HtFC~~CI~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl~p~~~ 91 (368)
..+.++|.|||-.+++.|||++ +.| +||=+.+|.+|+.. ...||.-+.++ ....+.||+.|...|+.+...++
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~--~~tdP~Tr~~L---~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLS--DSTDPFNRMPL---KLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTT--CCBCTTTCCBC---CGGGCEECHHHHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhc--CCCCCCCCCCC---CcccccccHHHHHHHHHHHHHHH
Confidence 4566899999999999999999 787 69999999999965 45799999887 45678999999999999977654
Q ss_pred c
Q 017653 92 R 92 (368)
Q Consensus 92 ~ 92 (368)
+
T Consensus 960 ~ 960 (968)
T 3m62_A 960 E 960 (968)
T ss_dssp T
T ss_pred h
Confidence 3
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.32 E-value=0.00091 Score=65.86 Aligned_cols=51 Identities=20% Similarity=0.429 Sum_probs=38.9
Q ss_pred cccccCccccccccc----cee---cCCCCCcccHHHHHHHhhccCC---------CcccCCCcccC
Q 017653 16 VACMTCPLCSKLFRD----ATT---ISECLHSFCRKCIYEKITEEEI---------DSCPVCNTDLG 66 (368)
Q Consensus 16 ~e~L~CpIC~~l~~d----Pv~---l~~CgHtFC~~CI~~~l~~~~~---------~~CP~Cr~~l~ 66 (368)
+....|+||...+.+ |-. ...|+|.|...||.+|+..... ..||.|+.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999998876 322 1269999999999999975321 46999998874
No 73
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=96.13 E-value=0.013 Score=46.90 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=60.5
Q ss_pred CCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCc-CCCCccHHHHHHHHhhcCCCccceecccCCCcc
Q 017653 275 PLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQP-VLSTLELHNLINWWVQTSSASERIQTVVGSSAK 353 (368)
Q Consensus 275 ~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~-~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~ 353 (368)
.+|.|.++=.-| ++.+||..+.+||+++|+|.++.-+=+.+++.- ..++.+|.+|++.+. .
T Consensus 15 ~~P~l~k~KflV-p~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~---------------- 76 (91)
T 4gdk_A 15 DTPIMKTKKWAV-ERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-S---------------- 76 (91)
T ss_dssp SSCCCSCCEEEE-ETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-B----------------
T ss_pred CCCcccccEEEc-CCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-C----------------
Confidence 488999987778 999999999999999999999888999998864 455899999999885 2
Q ss_pred ceEEEEeeecC
Q 017653 354 DFVMVLSYGRK 364 (368)
Q Consensus 354 ~~~m~l~y~r~ 364 (368)
|..++++|+-.
T Consensus 77 DGfLyv~Ys~~ 87 (91)
T 4gdk_A 77 DGKLVLHYCKS 87 (91)
T ss_dssp TTEEEEEEESS
T ss_pred CCEEEEEEeCc
Confidence 44788888753
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.90 E-value=0.003 Score=50.38 Aligned_cols=33 Identities=24% Similarity=0.686 Sum_probs=27.9
Q ss_pred ccccCccccc-cccccee--cCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSK-LFRDATT--ISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~-l~~dPv~--l~~CgHtFC~~CI~~~l 50 (368)
+++.|++|.+ ++.+|+. + .|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHh
Confidence 4689999996 4788988 6 899999999998743
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.55 E-value=0.014 Score=54.36 Aligned_cols=49 Identities=18% Similarity=0.462 Sum_probs=41.3
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...|.+|.+++..-+.-..|+|.|-..|+..|+...+...||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 5679999999987766656999999999999997666678999997653
No 76
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=94.72 E-value=0.055 Score=43.32 Aligned_cols=68 Identities=9% Similarity=0.185 Sum_probs=48.9
Q ss_pred CCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCC-cCCCCccHHHHHHHHhhcCCCccceecccCCCcc
Q 017653 275 PLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQ-PVLSTLELHNLINWWVQTSSASERIQTVVGSSAK 353 (368)
Q Consensus 275 ~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~-~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~ 353 (368)
.+|+|.++=.-| ++.+|+..+.+||+++|+| .-|=+.+++. ...++.+|.+|++.+..
T Consensus 18 ~~P~l~k~KflV-~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk~----------------- 76 (91)
T 3w1s_C 18 SIGQLKPSVCKI-SMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFKT----------------- 76 (91)
T ss_dssp C-------EEEE-ETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHCB-----------------
T ss_pred CCCcccccEEEc-CCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhCC-----------------
Confidence 488998876678 9999999999999999999 3688888876 34557899999998852
Q ss_pred ceEEEEeeec
Q 017653 354 DFVMVLSYGR 363 (368)
Q Consensus 354 ~~~m~l~y~r 363 (368)
|..++++|+-
T Consensus 77 dg~Lyv~Ys~ 86 (91)
T 3w1s_C 77 NDELIVSYCA 86 (91)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEeC
Confidence 3377888874
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.026 Score=55.89 Aligned_cols=71 Identities=20% Similarity=0.426 Sum_probs=56.0
Q ss_pred hcccccccCcccccccccceecCCCCCcccHHH--HHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 13 EKLVACMTCPLCSKLFRDATTISECLHSFCRKC--IYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~C--I~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
..+.-.|.|||-...+..|+.-..|.|.-|..- +..+........||+|...+ ..++|..|..+.+++...
T Consensus 244 ~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~---~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 244 TSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI---ALENLAISEFVDDILQNC 316 (371)
T ss_dssp CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC---CGGGEEEBHHHHHHHTTS
T ss_pred eeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc---CHHHeeEcHHHHHHHHhc
Confidence 344556999999999999999989999977654 33444444679999999775 788999999998887654
No 78
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=94.41 E-value=0.1 Score=43.61 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=59.9
Q ss_pred CCCCCcc-ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCcc
Q 017653 275 PLPQISS-CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSAK 353 (368)
Q Consensus 275 ~lp~i~~-~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~ 353 (368)
.+|.|.+ +|| | +..+||..+..+|+++|+|..+.-+=+.+++.....+.+|.+|.+..-+ .
T Consensus 42 ~~P~ldk~Kfl-V-p~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd----------------e 103 (118)
T 3rui_B 42 DIPEIDKRKYL-V-PADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKD----------------K 103 (118)
T ss_dssp CSCCCSCCEEE-E-ETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCC----------------T
T ss_pred CCCccccceEE-c-CCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCC----------------C
Confidence 5888887 566 8 9999999999999999999998889999998777778899999887743 2
Q ss_pred ceEEEEeeecC
Q 017653 354 DFVMVLSYGRK 364 (368)
Q Consensus 354 ~~~m~l~y~r~ 364 (368)
|..+.++|+..
T Consensus 104 DGfLyv~Ys~~ 114 (118)
T 3rui_B 104 DGFLYVTYSGE 114 (118)
T ss_dssp TSCEEEEEEEC
T ss_pred CCeEEEEEecc
Confidence 55778888754
No 79
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=94.37 E-value=0.073 Score=44.64 Aligned_cols=73 Identities=14% Similarity=0.260 Sum_probs=60.5
Q ss_pred CCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCccc
Q 017653 275 PLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSAKD 354 (368)
Q Consensus 275 ~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~~ 354 (368)
.+|.|.+.-.-| +..+||..+..+|+++|+|..+.-+=+.+++.....+.+|.+|.+...+. |
T Consensus 43 ~~P~Ldk~KflV-p~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~----------------D 105 (119)
T 3h9d_A 43 DIGELDRCKFLV-PSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDE----------------D 105 (119)
T ss_dssp SCCCCSSCEEEE-ETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCT----------------T
T ss_pred CCCccCcceEEc-CCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCC----------------C
Confidence 488888755557 99999999999999999999988899999998777788999988877432 5
Q ss_pred eEEEEeeecC
Q 017653 355 FVMVLSYGRK 364 (368)
Q Consensus 355 ~~m~l~y~r~ 364 (368)
..+.++|+..
T Consensus 106 GfLyv~Ys~e 115 (119)
T 3h9d_A 106 GFLYMKYSGE 115 (119)
T ss_dssp SCEEEEEECC
T ss_pred CeEEEEEecc
Confidence 5788888754
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.18 E-value=0.043 Score=54.14 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=55.9
Q ss_pred hcccccccCcccccccccceecCCCCCcccHHH--HHHHhhccCCCcccCCCcccCCCCCCCCccchHHHHHHHHh
Q 017653 13 EKLVACMTCPLCSKLFRDATTISECLHSFCRKC--IYEKITEEEIDSCPVCNTDLGCAPLEKLRADHNLQDLRIKI 86 (368)
Q Consensus 13 ~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~C--I~~~l~~~~~~~CP~Cr~~l~~~~~~~lr~n~~L~~Lvekl 86 (368)
..+.-.|.||+-...+..|+.-..|.|.-|..- +..+........||+|...+ ..+.|+.|.-+.+++...
T Consensus 210 ~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~---~~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA---AYESLILDGLFMEILNDC 282 (360)
T ss_dssp CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC---CGGGEEEBHHHHHHHTTC
T ss_pred eeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc---CHHHeEEcHHHHHHHHhC
Confidence 344557899999999999999989999966643 33344444679999999875 778999999999988753
No 81
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=94.11 E-value=0.14 Score=42.16 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCccc
Q 017653 275 PLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSAKD 354 (368)
Q Consensus 275 ~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~~ 354 (368)
.+|.|.+.=.-| ++.+||..+..+|+++|+|..+.-+=+.++|....++.+|.+|.+...+ .|
T Consensus 39 ~~p~l~k~KflV-p~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd----------------~D 101 (110)
T 2r2q_A 39 RVPDLDKRKYLV-PSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHE----------------ED 101 (110)
T ss_dssp CSCCCSCCEEEE-ETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCC----------------TT
T ss_pred CCCccceeEEEe-CCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCC----------------CC
Confidence 377787755556 7899999999999999999999889999999877788889888886633 25
Q ss_pred eEEEEeee
Q 017653 355 FVMVLSYG 362 (368)
Q Consensus 355 ~~m~l~y~ 362 (368)
..+.++|+
T Consensus 102 GfLyi~Ys 109 (110)
T 2r2q_A 102 YFLYVAYS 109 (110)
T ss_dssp SCEEEEEE
T ss_pred CEEEEEEe
Confidence 57778875
No 82
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=93.84 E-value=0.13 Score=42.83 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=58.4
Q ss_pred CCCCcc-ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCccc
Q 017653 276 LPQISS-CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSAKD 354 (368)
Q Consensus 276 lp~i~~-~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~~ 354 (368)
+|.|.+ +|+ | ++.+||..+..+|+++|+|.++.-+=+.++|....++.+|.+|.+...+ .|
T Consensus 41 ~p~l~k~Kfl-V-p~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd----------------~D 102 (117)
T 1eo6_A 41 IVDIDKRKYL-V-PSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKD----------------ED 102 (117)
T ss_dssp SCCCSCCEEE-E-ETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCC----------------TT
T ss_pred CCcccceEEE-c-CCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCC----------------CC
Confidence 778876 565 7 8899999999999999999999889999999877778889888887632 25
Q ss_pred eEEEEeeecC
Q 017653 355 FVMVLSYGRK 364 (368)
Q Consensus 355 ~~m~l~y~r~ 364 (368)
..+.++|...
T Consensus 103 GfLyi~Ys~~ 112 (117)
T 1eo6_A 103 GFLYVAYSGE 112 (117)
T ss_dssp SCEEEEEECC
T ss_pred CEEEEEEeCC
Confidence 5788888754
No 83
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=93.66 E-value=0.14 Score=43.35 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=59.9
Q ss_pred CCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCccc
Q 017653 275 PLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSAKD 354 (368)
Q Consensus 275 ~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~~~ 354 (368)
.+|.|.+.=.-| +..+||..+..+|+++|+|.++.-+=+.+++.....+.+|.+|.+...+. |
T Consensus 48 ~lP~LdK~KflV-p~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kde----------------D 110 (125)
T 3m95_A 48 RLGDLDKKKYLV-PSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE----------------D 110 (125)
T ss_dssp SSCCCSCCEEEE-ETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCT----------------T
T ss_pred CCccccCCEEEc-CCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCC----------------C
Confidence 488887754447 89999999999999999999988899999987777788999998877442 5
Q ss_pred eEEEEeeecC
Q 017653 355 FVMVLSYGRK 364 (368)
Q Consensus 355 ~~m~l~y~r~ 364 (368)
..+.++|+..
T Consensus 111 GfLY~~Ys~e 120 (125)
T 3m95_A 111 FFLYIAFSDE 120 (125)
T ss_dssp SCEEEEEESS
T ss_pred CeEEEEecCc
Confidence 5788888754
No 84
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=93.50 E-value=0.21 Score=40.28 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=53.6
Q ss_pred eEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcC-CcCCCCccHHHHHHHHhh
Q 017653 260 IWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRG-QPVLSTLELHNLINWWVQ 336 (368)
Q Consensus 260 iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g-~~~~~~~~l~~i~~~w~~ 336 (368)
|-+.+.+-. .+|.|.++=.-| ++.++|..+.+||+++|+|. -+=+.+++ -...++.+|.+|++....
T Consensus 14 V~V~~~~~~------~~P~l~k~KflV-~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd 81 (96)
T 1wz3_A 14 IVVHLRATG------GAPILKQSKFKV-SGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF 81 (96)
T ss_dssp EEEEEEECT------TCCCCSCCEEEE-ETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB
T ss_pred EEEEEEECC------CCCcccccEEEe-CCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC
Confidence 555555332 388888887788 99999999999999999998 77777777 555678899999988754
No 85
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=92.90 E-value=0.17 Score=42.99 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCCCcc-ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhh-hhcCCcCCCCccHHHHHHHHhhcCCCccceecccCCCc
Q 017653 275 PLPQISS-CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEI-SLRGQPVLSTLELHNLINWWVQTSSASERIQTVVGSSA 352 (368)
Q Consensus 275 ~lp~i~~-~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei-~c~g~~~~~~~~l~~i~~~w~~~~~~~~~~~~~~~~~~ 352 (368)
.+|.|.+ +|| | ++.+||..+..+|+++|+|..+.-+=+ .+++....++.+|.+|.+...+
T Consensus 48 ~~P~Ldk~Kfl-V-p~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd---------------- 109 (130)
T 2zjd_A 48 QLPVLDKTKFL-V-PDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKD---------------- 109 (130)
T ss_dssp SSCCCSCCEEE-E-ETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC----------------
T ss_pred cCccccccEEE-c-CCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCC----------------
Confidence 3788877 565 7 999999999999999999999888888 7777766778888888887633
Q ss_pred cceEEEEeeec
Q 017653 353 KDFVMVLSYGR 363 (368)
Q Consensus 353 ~~~~m~l~y~r 363 (368)
.|..+.++|..
T Consensus 110 eDGfLyv~Ys~ 120 (130)
T 2zjd_A 110 EDGFLYMVYAS 120 (130)
T ss_dssp TTSCEEEEEEE
T ss_pred CCCEEEEEEeC
Confidence 25578888864
No 86
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=92.48 E-value=0.25 Score=40.58 Aligned_cols=75 Identities=19% Similarity=0.354 Sum_probs=49.4
Q ss_pred eEEEEEecCCC-CCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCc-hh-------------hhhh---hh--cCC
Q 017653 260 IWFSLVASDEQ-EGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLIS-EA-------------EVEI---SL--RGQ 319 (368)
Q Consensus 260 iwf~l~~~~~q-~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~-e~-------------evei---~c--~g~ 319 (368)
|-+.+.+++.- .++. . ...+||.. .+++||.||-|||+.+|.|+. .. +++. +. .||
T Consensus 4 iELVFrPHPt~~~~d~-~--~~~RYIKT-t~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq 79 (111)
T 3gs2_A 4 IELVFRPHPTLMEKDD-S--AQTRYIKT-SGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQ 79 (111)
T ss_dssp EEEEEEECTTTSCCCT-T--CCCEEEEE-ETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSC
T ss_pred eEEEecCCcccccccc-h--hceEEEEc-CCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCe
Confidence 44455554433 2222 2 24489999 999999999999999988872 11 1111 11 122
Q ss_pred --cCCCCccHHHHHH-HHhhcC
Q 017653 320 --PVLSTLELHNLIN-WWVQTS 338 (368)
Q Consensus 320 --~~~~~~~l~~i~~-~w~~~~ 338 (368)
.|.-++||+.|-+ .|--..
T Consensus 80 ~~~L~gs~tLe~VneKywkvnk 101 (111)
T 3gs2_A 80 FTVLDGSFSLELVSEKYWKVNK 101 (111)
T ss_dssp EEECCTTSBHHHHHHHHTCSSS
T ss_pred EEEccCcccHHHHhhhhccCCC
Confidence 5788999999999 886554
No 87
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.26 E-value=0.24 Score=38.82 Aligned_cols=44 Identities=27% Similarity=0.688 Sum_probs=33.5
Q ss_pred cccccCcccccccccceecCCC----CCcccHHHHHHHhhccC---CCcccC
Q 017653 16 VACMTCPLCSKLFRDATTISEC----LHSFCRKCIYEKITEEE---IDSCPV 60 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~~C----gHtFC~~CI~~~l~~~~---~~~CP~ 60 (368)
...+.|.+|.+-+.+-... .| +|.||..|-..++...+ ...||.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 4578999999999987666 45 69999999988886542 244554
No 88
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=87.98 E-value=0.25 Score=39.79 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=38.1
Q ss_pred chhcccccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 11 NREKLVACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
....+-.-+.|.-|-...+.=| . ...|.+|..|+.-++. .+..||+|..+|
T Consensus 21 ~d~s~~G~~nCKsCWf~~k~LV-~-C~dHYLCl~CLtlmL~--~SdrCpIC~~pL 71 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFENKGLV-E-CNNHYLCLNCLTLLLS--VSNRCPICKMPL 71 (99)
T ss_dssp SSCCCSCCCCCCSSCSCCSSEE-E-CSSCEEEHHHHHHTCS--SSSEETTTTEEC
T ss_pred CCccccCcccChhhccccCCee-e-ecchhhHHHHHHHHHh--hccCCcccCCcC
Confidence 3344445678999987777533 3 4679999999998884 467899999876
No 89
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=87.67 E-value=0.34 Score=36.76 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=40.6
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||..|..+.+++.+ +.-+++.|..|.+..||.+.
T Consensus 26 ~~~v-~~~~tV~~lK~~i~~~~gip~~-~qrL~~~G~~L~d~~tL~~~ 71 (88)
T 3dbh_I 26 EIDI-EPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQMNDEKTAADY 71 (88)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GCCEEETTEECCTTSBGGGG
T ss_pred EEEE-CCCCCHHHHHHHHHHHHCcCHH-HEEEEECCeECCCCCcHHHc
Confidence 5788 8899999999999999999975 56889999999999888764
No 90
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=87.28 E-value=0.44 Score=35.56 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=41.2
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.| +...||..|++.+..+.|++.+ +.-+++.|.+|.+..||.+.
T Consensus 17 ~~~v-~~~~tv~~lk~~i~~~~gi~~~-~qrL~~~G~~L~d~~tl~~~ 62 (79)
T 2uyz_B 17 HFKV-KMTTHLKKLKESYCQRQGVPMN-SLRFLFEGQRIADNHTPKEL 62 (79)
T ss_dssp EEEE-ETTSCTHHHHHHHHHHHTCCGG-GEEEEETTEECCTTCCHHHH
T ss_pred EEEE-CCCChHHHHHHHHHHHHCCCcc-cEEEEECCEEeCCCCCHHHc
Confidence 5788 7889999999999999999875 77889999999999998875
No 91
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=86.91 E-value=0.31 Score=35.61 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=38.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||+.|..+.+++.+ +.-+++.|..+.+..+|.+.
T Consensus 14 ~i~v-~~~~tv~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 3a9j_A 14 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (76)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTCBTGGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcCHH-HeEEEECCeECCCCCcHHHc
Confidence 4677 7889999999999999999874 77889999999888777643
No 92
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=86.85 E-value=0.29 Score=36.88 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=39.7
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||..|..+.+++.+ +.-+++.|.++.++.||.+.
T Consensus 17 ~~~v-~~~~tV~~lK~~i~~~~~ip~~-~qrL~~~g~~L~d~~tL~~~ 62 (85)
T 3n3k_B 17 ILEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETBEECCTTCBTTTT
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCCCHH-HEEEEECCeECCCCCCHHHC
Confidence 4677 7899999999999999999985 56889999999998887663
No 93
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=86.46 E-value=0.39 Score=36.71 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=39.6
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.+.+ +.+.||..||..|..+.|++.+. .-+++.|..+.+..+|.+
T Consensus 31 ~~~v-~~~~tV~~lK~~i~~~~gip~~~-qrLi~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 31 TFIV-GAQMNVKEFKEHIAASVSIPSEK-QRLIYQGRVLQDDKKLQE 75 (88)
T ss_dssp EEEE-ETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBGGG
T ss_pred EEEE-CCCCCHHHHHHHHHHHhCCCHHH-EEEEECCEECCCCCcHHH
Confidence 4688 88999999999999999998865 488899999999888865
No 94
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.35 E-value=0.69 Score=35.07 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=40.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||+.|..+.+++.+ +.-+++.|.+|.+..||.+.
T Consensus 21 ~~~v-~~~~tV~~lK~~i~~~~gi~~~-~qrL~~~Gk~L~d~~tL~~~ 66 (87)
T 1wh3_A 21 AYAI-NPNSFILGLKQQIEDQQGLPKK-QQQLEFQGQVLQDWLGLGIY 66 (87)
T ss_dssp EEEE-CSSSBHHHHHHHHHHHTCCCTT-TEEEEETTEECCSSSBHHHH
T ss_pred EEEe-CCCChHHHHHHHHHHHhCCChH-HEEEEECCEEccCCCCHHHC
Confidence 4778 7899999999999999999874 66788999999999998765
No 95
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=86.27 E-value=0.37 Score=37.03 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=40.2
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||+.|..+.+++.+ +.-+++.|..|.+..+|.+.
T Consensus 19 ~~~v-~~~~tV~~lK~~i~~~~gip~~-~qrLi~~Gk~L~d~~tL~~~ 64 (90)
T 4dwf_A 19 TFIV-GAQMNVKEFKEHIAASVSIPSE-KQRLIYQGRVLQDDKKLQEY 64 (90)
T ss_dssp EEEE-ETTCBHHHHHHHHHHHHTCCGG-GEEEEETTEECCTTSBGGGG
T ss_pred EEEE-CCCCCHHHHHHHHHHHhCCCHH-HEEEEECCeECCCCCCHHHc
Confidence 4788 7899999999999999999885 55788999999999888764
No 96
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=86.22 E-value=0.39 Score=36.03 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=39.8
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||..|..+.+++.+ +.-+++.|..|.+..+|.+.
T Consensus 17 ~~~v-~~~~tV~~lK~~i~~~~~i~~~-~qrL~~~g~~L~d~~tL~~~ 62 (85)
T 3mtn_B 17 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTSBTGGG
T ss_pred EEEE-CCCCCHHHHHHHHHHHHCcChH-HEEEEECCEECCCCCCHHHc
Confidence 4778 8899999999999999999885 56788999999998887663
No 97
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=85.91 E-value=0.52 Score=35.18 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=39.5
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.+.+ +...||..||..|..+.|++.+ +.-+++.|..+.+..||.+
T Consensus 18 ~~~v-~~~~tV~~lK~~i~~~~gip~~-~qrL~~~G~~L~d~~tL~~ 62 (79)
T 3phx_B 18 TYEV-RLTQTVAHLKQQVSGLEGVQDD-LFWLTFEGKPLEDQLPLGE 62 (79)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHHTCCGG-GEEEEETTEECCTTSBGGG
T ss_pred EEEE-CCcChHHHHHHHHHhhcCCCHH-HEEEEECCEECCCCCcHHH
Confidence 4788 8899999999999999999975 5688899999999888865
No 98
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=85.77 E-value=0.46 Score=34.69 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=39.1
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||..|..+.+++. ++.-+++.|.++.+..+|.+.
T Consensus 14 ~~~v-~~~~tv~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 1ndd_A 14 EIDI-EPTDKVERIKERVEEKEGIPP-QQQRLIYSGKQMNDEKTAADY 59 (76)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBGGGG
T ss_pred EEEE-CCCChHHHHHHHHHHHHCcCh-HHEEEEECCEECCCCCcHHHc
Confidence 4677 778999999999999999987 467788999999888887653
No 99
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.63 E-value=0.46 Score=35.39 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=39.4
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||+.|..+.+++.+ +.-+++.|..+.+..+|.+.
T Consensus 21 ~~~v-~~~~tV~~LK~~i~~~~~i~~~-~qrL~~~gk~L~d~~tL~~~ 66 (81)
T 2dzi_A 21 SLQV-PEDELVSTLKQLVSEKLNVPVR-QQRLLFKGKALADGKRLSDY 66 (81)
T ss_dssp EEEE-CSSCBHHHHHHHHHHHTCCCTT-TCEEEETTEECCTTSBGGGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcCHH-HEEEEECCeECCCCCcHHHc
Confidence 4678 8899999999999999999874 67788999999888887653
No 100
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=85.55 E-value=0.44 Score=35.12 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=39.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||..|..+.|++. ++.-+++.|..+.+..+|.+.
T Consensus 17 ~~~v-~~~~tV~~LK~~i~~~~~i~~-~~qrL~~~gk~L~d~~tL~~~ 62 (77)
T 2bwf_A 17 EVNV-APESTVLQFKEAINKANGIPV-ANQRLIYSGKILKDDQTVESY 62 (77)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTGGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHhCCCH-HHEEEEECCeEcCCCCCHHHc
Confidence 4678 889999999999999999986 477788999999888777653
No 101
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=85.14 E-value=0.43 Score=37.59 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.6
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||+.|..+.+++.+ +.-+++.|..|.+..+|.+.
T Consensus 36 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~~ 81 (98)
T 4hcn_B 36 TLEV-ESSDTIDNVKSKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 81 (98)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTCBSGGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHhCCChh-HEEEEECCEECCCCCcHHHC
Confidence 4778 8899999999999999999885 55888999999998887653
No 102
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.12 E-value=0.73 Score=35.87 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=40.7
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+++ +...||..||+.|..+.+++.+ +.-+++.|..|.+..||.+.
T Consensus 30 ~~~v-~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L~D~~tL~~~ 75 (96)
T 1wx8_A 30 EFFL-AENSNVRRFKKQISKYLHCNAD-RLVLIFTGKILRDQDILSQR 75 (96)
T ss_dssp EEEE-ETTCCHHHHHHHHHHHTCSCTT-TBCCEETTEECCTTSCHHHH
T ss_pred EEEE-CCCCCHHHHHHHHHHHhCCCHH-HEEEEECCEECCCcCCHHHC
Confidence 5788 7899999999999999999875 67788999999999998874
No 103
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=84.49 E-value=0.61 Score=36.03 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=39.7
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.+++ +...||..||..|..+.|++.+ +.-+++.|..+.+..||.+
T Consensus 31 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSD 75 (91)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTCBTGG
T ss_pred EEEE-CCCCCHHHHHHHHHhhhCCChh-hEEEEECCeECCCcCcHHH
Confidence 5788 8899999999999999999885 5688899999999888765
No 104
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=84.34 E-value=0.72 Score=36.32 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=49.0
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
..+.+.+. .+.|. .-.|.| +...||..|++.|..+.|++.+ +.-+++.|..|.+..||.+.
T Consensus 20 ~~m~I~Vk---~~~g~-------~~~l~v-~~~~tv~~lK~~i~~~~gip~~-~qrLif~Gk~L~d~~tl~dy 80 (97)
T 1wyw_B 20 EYIKLKVI---GQDSS-------EIHFKV-KMTTHLKKLKESYCQRQGVPMN-SLRFLFEGQRIADNHTPKEL 80 (97)
T ss_dssp CEEEEEEE---CTTCC-------EEEEEE-ETTSCTHHHHHHHHHHHTCCGG-GEEEEETTEECCTTCCHHHH
T ss_pred CcEEEEEE---eCCCC-------EEEEEE-CCCCcHHHHHHHHHHHHCCChh-hEEEEECCeEcCCCCCHHHC
Confidence 44777777 33332 135888 7899999999999999999875 77899999999999998875
No 105
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=84.28 E-value=1 Score=34.53 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=40.1
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||..|..+.|++.+ +.-+++.|.+|.+..||.+.
T Consensus 18 ~~~v-~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L~D~~tL~~~ 63 (88)
T 2hj8_A 18 TYEV-RLTQTVAHLKQQVSGLEGVQDD-LFWLTFEGKPLEDQLPLGEY 63 (88)
T ss_dssp EEEE-ESSSBHHHHHHHHHHHTCSCTT-TEEEESSSSCCCTTSBHHHH
T ss_pred EEEE-CCCCcHHHHHHHHHHHhCCChh-HEEEEECCEECCCCCcHHHc
Confidence 4778 7889999999999999999875 66788999999999888765
No 106
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=84.26 E-value=0.71 Score=36.87 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=40.7
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||+.|..+.+++. .+.-|++.|..|.+..+|.+.
T Consensus 30 ~l~v-~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~ 75 (106)
T 1wx7_A 30 DFSV-TDTCTIQQLKEEISQRFKAHP-DQLVLIFAGKILKDPDSLAQC 75 (106)
T ss_dssp EEEE-ETTCCHHHHHHHHHHHHTCCT-TTEEEEETTEECCTTSCHHHH
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHc
Confidence 5788 889999999999999999986 467788999999999998765
No 107
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=84.25 E-value=0.48 Score=36.73 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=40.2
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||..|..+.+++.+ +.-+++.|..|.++.||.+.
T Consensus 15 ~~~v-~~~~TV~~LK~~i~~~~gip~~-~qrL~~~G~~L~d~~tL~~~ 60 (96)
T 3k9o_B 15 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 60 (96)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEE-CCCCCHHHHHHHHHhhhCCChh-HEEEEECCEECCCCCcHHHc
Confidence 4678 8899999999999999999875 56888999999999888764
No 108
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=84.11 E-value=0.56 Score=36.16 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=40.1
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +.+.||..||..|..+.+++.+ +.-+++.|..|.+..||.+.
T Consensus 14 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~~ 59 (88)
T 4fbj_B 14 EIDI-EPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQMNDEKTAADY 59 (88)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTSBTTTT
T ss_pred EEEE-CCCCCHHHHHHHHHHHHCcChh-HEEEEECCeECCCCCcHHHc
Confidence 4677 8899999999999999999885 55889999999999888764
No 109
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=83.76 E-value=0.93 Score=35.37 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=40.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||+.|..+.+++.+ +.-+++.|.+|.+..||.+.
T Consensus 31 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~y 76 (93)
T 2l7r_A 31 TFEV-TGQETVAQIKAHVASLEGIAPE-DQVVLLAGAPLEDEATLGQC 76 (93)
T ss_dssp EEEC-CSSCBHHHHHHHHHHHHTCCGG-GCEEEETTEECCTTSBHHHH
T ss_pred EEEe-CCCCcHHHHHHHHHHHhCcChh-HEEEEECCEECCCCCcHHHC
Confidence 4788 8899999999999999999874 66788999999999888765
No 110
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=82.95 E-value=1.1 Score=34.31 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=39.8
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCc-CCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQP-VLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~-~~~~~~l~~i 330 (368)
.+.+ +...||..||.-|..+.|++.+ +.-+++.|.+ +.+..||.+.
T Consensus 24 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~lL~D~~tL~~y 70 (84)
T 2kk8_A 24 ELEV-DYRDTLLVVKQKIERSQHIPVS-KQTLIVDGIVILREDLTVEQC 70 (84)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHHTCCGG-GEEEEETTEECCCSSSBHHHH
T ss_pred EEEE-CCCChHHHHHHHHHHHHCcChH-HEEEEECCEEecCCcCCHHHc
Confidence 3678 8899999999999999999874 6678899999 9999888764
No 111
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=82.73 E-value=2.9 Score=32.66 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=49.4
Q ss_pred CCCcCCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCC-ccHHHH
Q 017653 254 DGRFGPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLST-LELHNL 330 (368)
Q Consensus 254 ~~~~~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~-~~l~~i 330 (368)
+.....+.+.+.... . .--|.+ +...||..||+.|..+.|++.+ +.-+++.|.+|.+. .||.+.
T Consensus 10 ~~~~~~~~I~Vk~~~---------~--~~~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~~tL~~y 74 (94)
T 2kan_A 10 HAAVRKIHVTVKFPS---------K--QFTVEV-DRTETVSSLKDKIHIVENTPIK-RMQLYYSGIELADDYRNLNEY 74 (94)
T ss_dssp CSSSCCEEEEEECSS---------C--EEEEEE-CTTCBHHHHHHHHHHHSSSCTT-TEEEEETTEEECCTTSBHHHH
T ss_pred ccCCCCEEEEEEcCC---------c--EEEEEE-CCCCcHHHHHHHHHHHHCcCHH-HEEEEECCEECCCCcccHHHC
Confidence 445566777777211 1 234788 8999999999999999999875 66778999999988 888765
No 112
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=82.39 E-value=0.64 Score=36.40 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=39.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||+.|..+.+++.+ +.-+++.|.+|.+..||.+.
T Consensus 14 ~~~v-~~~~TV~~LK~~I~~~~gi~~~-~qrL~~~Gk~L~D~~tL~~~ 59 (98)
T 1yx5_B 14 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (98)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHTCCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcChh-hEEEEECCEECCCCCCHHHc
Confidence 4667 7789999999999999999875 67788999999988887654
No 113
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.06 E-value=1.2 Score=33.80 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=39.8
Q ss_pred ee-eeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YL-RVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 yl-r~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.| .+ +...||..||..|..+.+++.+ +.-+++.|.+|.+..||.+.
T Consensus 22 ~l~~v-~~~~tV~~lK~~i~~~~gip~~-~qrL~~~gk~L~d~~tL~~~ 68 (89)
T 1wy8_A 22 TIEDV-SRKATIEELRERVWALFDVRPE-CQRLFYRGKQLENGYTLFDY 68 (89)
T ss_dssp EEEEE-CTTCBHHHHHHHHHHHSCCCTT-TEEEEETTEECCSSSBHHHH
T ss_pred EEEec-CCCCCHHHHHHHHHHHHCcChh-hEEEEECCeECCCCCCHHHC
Confidence 46 47 8899999999999999999875 66788999999999998765
No 114
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=81.10 E-value=1.2 Score=35.32 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=40.7
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||+.|..+.+++. ++.-+++.|..|.+..||.+.
T Consensus 35 ~l~v-~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~y 80 (100)
T 1yqb_A 35 DFSV-TDTCTIQQLKEEISQRFKAHP-DQLVLIFAGKILKDPDSLAQC 80 (100)
T ss_dssp EEEE-ETTCBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBHHHH
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHC
Confidence 5788 789999999999999999986 577788999999999998775
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.66 E-value=1.7 Score=34.61 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=33.8
Q ss_pred cccCcccccccc-----ccee-cCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFR-----DATT-ISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~-----dPv~-l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
.-.|.||.+-+- ++.+ -..|+-..|+.|+.--.. ++...||.|+..+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCccc
Confidence 468999998632 1111 136888999999864444 47889999998763
No 116
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=80.39 E-value=0.91 Score=34.89 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=38.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.+.+ +...||..||..|..+.|++. .+.-+++.|.+|.+..+|.+
T Consensus 25 ~l~v-~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~ 69 (85)
T 2kd0_A 25 PLSV-SPDCTVKDLKSQLQPITNVLP-RGQKLIFKGKVLVETSTLKQ 69 (85)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHHCCCT-TTCEEEETTEECCTTCBTTT
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcCh-HHEEEEECCeECCCcCCHHH
Confidence 3677 889999999999999999987 46678899999988877754
No 117
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=80.20 E-value=1.4 Score=36.77 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=40.3
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
-+|.| +.+.||..||.-|..|.|++.+.+ -+++.|.+|.+..||.+
T Consensus 14 i~lev-~~sdTV~~lK~kI~~~egIP~~qQ-rLi~~Gk~LeD~~TLsd 59 (118)
T 2fnj_B 14 IFTDA-KESSTVFELKRIVEGILKRPPEEQ-RLYKDDQLLDDGKTLGE 59 (118)
T ss_dssp EEEEE-ETTSBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBHHH
T ss_pred EEEEe-CCcChHHHHHHHHHHHhCCCHHHe-EEEECCeECCCCCCHHH
Confidence 47888 789999999999999999998655 45599999999999986
No 118
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=79.96 E-value=1.6 Score=33.27 Aligned_cols=62 Identities=8% Similarity=0.113 Sum_probs=49.2
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
..|-+.+. .|.|. ..-+++| ...-++..|++..+.|.|++.. ++-+++.|+.|.+..|+.++
T Consensus 6 ~~i~ikV~---~~~g~------~~i~~~i-~~~t~l~kl~~~y~~~~gi~~~-~~rf~fdG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 6 QELRLRVQ---GKEKH------QMLEISL-SPDSPLKVLMSHYEEAMGLSGH-KLSFFFDGTKLSGKELPADL 67 (79)
T ss_dssp CCEEEEEE---CSSTT------CEEEEEE-CTTSCHHHHHHHHHHHHTCTTC-CCEEEETTEECCSCCCHHHH
T ss_pred CEEEEEEE---eCCCC------EEEEEEE-CCCChHHHHHHHHHHHhCCCcc-cEEEEECCEEcCCCCCHHHc
Confidence 34666666 44331 0237888 7788999999999999999875 89999999999999999886
No 119
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.88 E-value=0.67 Score=37.23 Aligned_cols=46 Identities=7% Similarity=0.120 Sum_probs=39.8
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||..|..+.|++.+ +.-+++.|..|.+..+|.+.
T Consensus 15 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~~ 60 (106)
T 3m62_B 15 PLDL-EPSNTILETKTKLAQSISCEES-QIKLIYSGKVLQDSKTVSEC 60 (106)
T ss_dssp EECC-CTTSBHHHHHHHHHHTTTSCGG-GCEEEETTEECCTTSBTTTT
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCCChh-hEEEEECCEECCCcCCHHHc
Confidence 4667 8899999999999999999875 55789999999999888775
No 120
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.62 E-value=0.78 Score=36.61 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=39.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+++ +.+.||..||..|..+.|++.+ +.-+++.|..|.+..+|.+.
T Consensus 41 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 41 EVNV-APESTVLQFKEAINKANGIPVA-NQRLIYSGKILKDDQTVESY 86 (101)
T ss_dssp CBCC-CTTSBHHHHHHHHHHHHSCCST-TCCEEETTEECCTTSBTTTT
T ss_pred EEEe-CCCCCHHHHHHHHHHHHCcChH-HEEEEECCEECCCcCcHHHC
Confidence 3677 8899999999999999999876 45788999999988887653
No 121
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=78.82 E-value=1.1 Score=34.42 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=39.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||.-|..+.+++. ++.-+++.|.+|.+..||.+.
T Consensus 23 ~l~v-~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~~ 68 (88)
T 1sif_A 23 TVEM-EPSDTIENLKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDY 68 (88)
T ss_dssp EEEC-CTTSBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTSBSGGG
T ss_pred EEEE-CCCChHHHHHHHHHHHHCcCh-hhEEEEECCEECCCCCcHHHc
Confidence 4677 788999999999999999987 467788999999888777654
No 122
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=78.71 E-value=0.89 Score=36.14 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=39.7
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||+.|..+.|++. .+.-+++.|..|.+..||.+.
T Consensus 38 ~l~v-~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~ 83 (101)
T 2klc_A 38 EFAV-PENSSVQQFKEEISKRFKSHT-DQLVLIFAGKILKDQDTLSQH 83 (101)
T ss_dssp EEEE-CSCCCHHHHHHHHHHHHTCCG-GGEEEEETTEEECTTCCTGGG
T ss_pred EEEE-CCCCCHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHc
Confidence 4788 889999999999999999986 577788999999888887654
No 123
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=78.65 E-value=1.6 Score=34.91 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=40.6
Q ss_pred eeeeeCCCccHHHHHHHHHHHh-CCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKL-NLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL-~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
-|.+ +.+.||..||.-|..++ |.+...+.-++|.|.+|.+..||.+.
T Consensus 39 ~l~v-~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 39 TISC-FLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDI 86 (99)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHH
T ss_pred EEEc-CCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHH
Confidence 4678 89999999999999987 56655688899999999999999875
No 124
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=78.62 E-value=1.2 Score=32.88 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=38.2
Q ss_pred eee-eeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLR-VKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr-~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.+. + +.+.||..||.-|..+.|++.+ +.-+++.|.++.+..||.+
T Consensus 17 ~l~~v-~~~~tv~~lK~~i~~~~gip~~-~qrL~~~g~~L~d~~tL~~ 62 (78)
T 2faz_A 17 TVDSL-SRLTKVEELRRKIQELFHVEPG-LQRLFYRGKQMEDGHTLFD 62 (78)
T ss_dssp EEEEE-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTCBTTT
T ss_pred EEecc-CCCCCHHHHHHHHHHHHCcChh-hEEEEECCEECCCCCCHHH
Confidence 366 7 8899999999999999999874 6678899999988877754
No 125
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.18 E-value=1.8 Score=33.53 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=38.6
Q ss_pred eeeeCCCccHHHHHHHHHHHh--CCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKL--NLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL--~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
|.+ +.+.||..||+.|..+. +++.+ +.-+++.|.+|.+..+|.+.
T Consensus 24 v~v-~~~~TV~~lK~~I~~~~~~~i~~~-~QrLi~~Gk~L~D~~tL~~~ 70 (93)
T 1wgd_A 24 LSG-DRGWSVGHLKAHLSRVYPERPRPE-DQRLIYSGKLLLDHQCLRDL 70 (93)
T ss_dssp EEC-CTTSCHHHHHHHHHHHSTTCCCTT-TCEEEETTEECCSSSCHHHH
T ss_pred Eec-CCCCcHHHHHHHHHHHhcCCCChH-HeEEEECCEECcCcCCHHHH
Confidence 445 68999999999999999 88874 66788999999999998875
No 126
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=79.06 E-value=0.47 Score=35.01 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=38.1
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+.+ +.+.||..||..|..+.|++. ++.-+++.|.++.+..||.+.
T Consensus 15 ~~v-~~~~tV~~lK~~i~~~~gi~~-~~qrL~~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEV-DSDTSILQLKEVVAKQQGVPA-DQLRVIFAGKELPNHLTVQNC 59 (76)
Confidence 567 778999999999999999986 467788999999888777654
No 127
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.16 E-value=0.97 Score=37.58 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=40.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||+.|..+.+++. .+.-|++.|..|.+..||.+.
T Consensus 45 ~l~v-~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~dy 90 (125)
T 1j8c_A 45 EFAV-PENSSVQQFKEAISKRFKSQT-DQLVLIFAGKILKDQDTLIQH 90 (125)
T ss_dssp EEEE-CTTCCHHHHHHHHHHHHCSCS-SSEEEEETTEEESTTSCGGGT
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcCc-ceEEEEECCEEcCCCCCHHHc
Confidence 5788 889999999999999999987 477788999999998888764
No 128
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.88 E-value=1.7 Score=34.74 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=39.6
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.+ +...||..||..|..+.|++.+ +.-+++.|..|.+..+|.+.
T Consensus 37 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~y 82 (106)
T 1ttn_A 37 KLVV-RSTDTVFHMKRRLHAAEGVEPG-SQRWFFSGRPLTDKMKFEEL 82 (106)
T ss_dssp EEEE-CTTSHHHHHHHHHHHTTCCCST-TCEEEETTEECCTTSHHHHC
T ss_pred EEEe-CCCCcHHHHHHHHHHHHCcCcc-cEEEEECCEECCCCCcHHHc
Confidence 4788 8899999999999999999874 66788999999888887654
No 129
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=76.24 E-value=1.9 Score=34.77 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=39.7
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.++| +...||..||..|..+.+++.+ +.-+++.|..|.+..+|.+.
T Consensus 49 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~~ 94 (111)
T 3vdz_A 49 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 94 (111)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTTTT
T ss_pred EEEe-CCCCCHHHHHHHHHHHhCCChH-HEEEEECCEECCCCCcHHHC
Confidence 5788 8899999999999999999975 66788999999988887653
No 130
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=75.71 E-value=1.4 Score=35.26 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=38.6
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
+.| +..-||..||+-|..|.|++.+ +.-+.+.|..+.+..||.+
T Consensus 36 v~v-~p~DTI~~LK~~I~~k~Gip~~-qQrLif~Gk~LkD~~TL~d 79 (93)
T 3plu_A 36 VKC-LGEDSVGDFKKVLSLQIGTQPN-KIVLQKGGSVLKDHISLED 79 (93)
T ss_dssp EEE-ETTSBHHHHHHHHHHHHTCCGG-GEEEEETTEECCTTSBTGG
T ss_pred EEE-CCcCHHHHHHHHHHHHhCCCHH-HEEEEeCCEEccCcCCHHH
Confidence 677 8899999999999999999996 4567789999999999864
No 131
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.09 E-value=2.7 Score=33.23 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=38.5
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCC-ccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLST-LELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~-~~l~~i 330 (368)
+.+ +...||..||..|..+.+++.+ +.-+++.|.+|.+. .||.+.
T Consensus 26 i~v-~~~~TV~~LK~~I~~~~gip~~-~qrL~~~gk~L~D~~~tL~~y 71 (102)
T 1v5o_A 26 LQV-NPDFELSNFRVLCELESGVPAE-EAQIVYMEQLLTDDHCSLGSY 71 (102)
T ss_dssp EEE-CTTCBHHHHHHHHHHHTCCCGG-GBCEEETTEEECCSSSBHHHH
T ss_pred EEc-CCCCCHHHHHHHHHHHHCcChH-HeEEEECCEECCCCcccHHHC
Confidence 778 8899999999999999999875 66788999999877 577764
No 132
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=74.58 E-value=1.6 Score=35.51 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=39.2
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
-|.+ +...||..||.-|..++|++.+.|= +.+.|+.+.+..||.+
T Consensus 40 ~l~V-~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 40 WLTV-RPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEE-CCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 4667 8899999999999999999998876 9999998888888754
No 133
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.25 E-value=2.4 Score=34.22 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=39.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
-|.| +...||..||.-|..|.|++. .+.-++|.|..|.+..||.+-
T Consensus 33 ~lev-~~~~TV~~lK~kI~~k~gip~-~qQrLI~~GKiL~D~~TL~~y 78 (100)
T 1wju_A 33 LLET-RLHITGRELRSKIAETFGLQE-NYIKIVINKKQLQLGKTLEEQ 78 (100)
T ss_dssp EEEE-ESSSBHHHHHHHHHHHTTCCS-TTCEEEETTEECCTTSBHHHH
T ss_pred EEEe-CCcCHHHHHHHHHHHHHCcCH-HHeEEEeCCeECCCCCcHHHc
Confidence 4678 788999999999999999987 466777999999999998763
No 134
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.19 E-value=2.8 Score=33.49 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=35.7
Q ss_pred CccHHHHHHHHHHHh--CCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 290 RLPVSFIKRYIVKKL--NLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 290 ~~~v~~l~Kyl~~KL--~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
..||..||+.|..+. +++.+...-+++.|..|.+..||.+.
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y 86 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY 86 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc
Confidence 499999999999999 99976426788999999999998775
No 135
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=73.26 E-value=3.4 Score=33.76 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=51.3
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
..|-+.+. .|.+. . -+++| .-.-++.-|+...+.+.|++.. ++-+++.|+.|.+..|+.++-
T Consensus 25 ~~I~IkVk---~~~g~----~---i~fkV-k~~t~l~kL~~ay~ek~gi~~~-~~rfiFdG~~L~~~~Tp~dl~ 86 (110)
T 2k8h_A 25 ALVAVKVV---NADGA----E---MFFRI-KSRTALKKLIDTYCKKQGISRN-SVRFLFDGTPIDETKTPEELG 86 (110)
T ss_dssp CCEEEEEE---ETTSC----C---EEEEE-CTTSSHHHHHHHHHHHHTCCSS-SCEEESSSCBCCSSSHHHHHH
T ss_pred CeEEEEEE---CCCCC----E---EEEEE-CCCChHHHHHHHHHHHhCCCcc-cEEEEECCEEcCCCCCHHHcC
Confidence 45777777 44443 2 27888 7789999999999999999875 899999999999999999884
No 136
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.25 E-value=2.7 Score=33.91 Aligned_cols=44 Identities=7% Similarity=0.058 Sum_probs=39.0
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
|.| +...||..||+-|..|-|++.+ +.-+++.|.+|.+..||.+
T Consensus 43 lev-~p~dTV~~lK~~Ia~k~Gip~~-qQrLi~~Gk~L~D~~TL~d 86 (100)
T 1uh6_A 43 VKC-NTDDTIGDLKKLIAAQTGTRWN-KIVLKKWYTIFKDHVSLGD 86 (100)
T ss_dssp EEE-ETTSBHHHHHHHHHHHHCCCGG-GCEEEETTEECCSSCBHHH
T ss_pred EEe-CCCCcHHHHHHHHHHHhCCCHH-HEEEEECCEECCCCCCHHH
Confidence 778 8899999999999999999874 6667789999999999876
No 137
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.94 E-value=2.5 Score=32.54 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=33.8
Q ss_pred CccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCC-CccHHHH
Q 017653 290 RLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLS-TLELHNL 330 (368)
Q Consensus 290 ~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~-~~~l~~i 330 (368)
..||..||..|..+.|++.+ +.-|++.|.+|.+ ..+|.+.
T Consensus 31 ~~TV~~LK~~i~~~~gip~~-~qrL~~~Gk~L~D~~~~L~~~ 71 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQS-FQKLIFKGKSLKEMETPLSAL 71 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTT-TCEEEETTEEECCSSSBHHHH
T ss_pred cCcHHHHHHHHHHHHCcCHH-HEEEEECCeecCCCcccHHHC
Confidence 59999999999999999965 6678899999987 6677664
No 138
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=72.73 E-value=2.5 Score=34.18 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=49.9
Q ss_pred CCeEEEEEecCCCCC-CCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 258 GPIWFSLVASDEQEG-DEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~-~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+|-+.+..+..+.. +-.|-.- .--|.| +...||..||..|..+.|++.+ +.-+++.|..|.+..||.+.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~-~~~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrL~~~Gk~L~D~~tL~~y 94 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQ-GLVFTL-PLTDQVSVIKVKIHEATGMPAG-KQKLQYEGIFIKDSNSLAYY 94 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSE-EEEEEE-CSCSBTHHHHHHHHHHSSCCTT-TEEEEETTEEECTTSBHHHH
T ss_pred CCEEEEEEcCCCccccccccCCe-EEEEEE-CCCCCHHHHHHHHHHHHCCChH-HEEEEECCEECCCCCCHHHC
Confidence 367887775543311 1112111 123788 8999999999999999999875 66788899999999888764
No 139
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=71.86 E-value=1.7 Score=32.27 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=40.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+++| ...-++..|+...+.|.|++. .++-+++.|+.|.+..|+.++
T Consensus 15 ~~~v-~~~t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~~Tp~~l 60 (72)
T 1wm3_A 15 QFKI-KRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQL 60 (72)
T ss_dssp EEEE-CTTSCTHHHHHHHHHHHTCCT-TTCEEEETTEECCTTCCTTTT
T ss_pred EEEE-CCCChHHHHHHHHHHHhCCCc-ceEEEEECCEEcCCCCCHHHc
Confidence 7888 778899999999999999987 689999999999999887664
No 140
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=71.76 E-value=2.6 Score=31.56 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=38.0
Q ss_pred eeeeeCCCccHHHHHHHHHHH---hCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKK---LNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~K---L~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||..|..+ -|++. ++.-+++.|..|.+..+|.+.
T Consensus 19 ~~~v-~~~~TV~~lK~~i~~~~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~ 67 (85)
T 2wyq_A 19 KIRM-EPDETVKVLKEKIEAEKGRDAFPV-AGQKLIYAGKILSDDVPIRDY 67 (85)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHHCTTTCCG-GGEEEEETTEECCTTSBGGGG
T ss_pred EEEE-CCCCCHHHHHHHHHhhccccCCCH-HHeEEEECCEECcCCCCHHHc
Confidence 4788 8899999999999998 56775 567788999999888887653
No 141
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=71.09 E-value=2 Score=34.88 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=39.2
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.+ +...||..||.-|..+.+++.+ +.-+++.|.+|.+..||.+.
T Consensus 23 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~y 68 (114)
T 2kdi_A 23 TLEV-ESSDTIDNVKSKIQDKEGIPPD-QQRLIWAGKQLEDGRTLSDY 68 (114)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTCBTTTT
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcChH-HEEEEECCEECCCCCcHHHC
Confidence 4677 8899999999999999999875 66788999999888887654
No 142
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.91 E-value=5.4 Score=31.09 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=37.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|++ +...||..||..|..+.+++.+ +.-|++.|.++. ..+|.+.
T Consensus 30 ~i~v-~~~~TV~~LK~~I~~~tgip~~-~QrL~~~Gk~Ld-d~tL~~~ 74 (95)
T 1v86_A 30 DVKV-PLDSTGSELKQKIHSITGLPPA-MQKVMYKGLVPE-DKTLREI 74 (95)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHHCSCST-TCCCBSSSBCCS-SSBHHHH
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcCHH-HeEEEECCeeCC-cCcHHHC
Confidence 3788 8999999999999999999985 556779999984 4477654
No 143
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=69.75 E-value=2.4 Score=34.10 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=38.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||+.|..+.+++.+ +.-+++.|..|.+..||.+.
T Consensus 49 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~~ 94 (111)
T 2ojr_A 49 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 94 (111)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCTT-TEEEEETTEECCSSCBTTTT
T ss_pred EEEe-CCCCCHHHHHHHHHHHHCcCcc-cEEEEECCEECCCCCcHHHc
Confidence 4788 7899999999999999999875 66788999999888777543
No 144
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=69.70 E-value=3.2 Score=33.27 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=38.5
Q ss_pred eeeeCC-CccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 284 LRVKDG-RLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~-~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+.+ +. ..||..||..|..+.|++.+ +.-+++.|..+.+..||.+.
T Consensus 45 l~v-~~l~~TV~~LK~~I~~~~gip~~-~QrL~~~Gk~L~D~~tL~~y 90 (111)
T 1we6_A 45 ITV-QSLSENVGSLKEKIAGEIQIPAN-KQKLSGKAGFLKDNMSLAHY 90 (111)
T ss_dssp EEE-SCSSSBHHHHHHHHHHHTTCCTT-TSEEECSSSBCCTTSBTTTT
T ss_pred EEe-cCCCCcHHHHHHHHHHHHCCCHH-HeEEEECCEECCCCCcHHHC
Confidence 788 87 99999999999999999874 66788899999888777543
No 145
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=69.42 E-value=0.96 Score=37.47 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.+ +...||..||.-|..+.|++.+ +.-+++.|.+|.++.||.+.
T Consensus 14 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 14 TLEV-ESSDTIDNVKSKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (128)
T ss_dssp ------------------------------------------------
T ss_pred EEEe-CCCCCHHHHHHHHHHHhCcChH-HEEEEECCEECCCCCchhhh
Confidence 3567 7889999999999999999986 55788999999999888765
No 146
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.41 E-value=2.9 Score=33.80 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
..|-+.+. .|.+. .-+++| .-.-++..|+...+.|.+++. .++-+++.|+.|.+..|+.++-
T Consensus 23 ~~I~IkVk---~~~g~-------~i~~kV-k~~t~l~kL~~~y~ek~gi~~-~~~rf~FdG~~l~~~~Tp~dl~ 84 (104)
T 1wz0_A 23 DHINLKVA---GQDGS-------VVQFKI-KRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLE 84 (104)
T ss_dssp CCEEEEEE---CSSSC-------EEEEEE-CTTSCHHHHHHHHHHHHTCCT-TTSCEESSSSBCCTTSCTTTTT
T ss_pred CeEEEEEE---CCCCC-------EEEEEE-cCCChHHHHHHHHHHHhCCCc-ceEEEEECCEEcCCCCCHHHcC
Confidence 35777777 44442 237889 788999999999999999987 4999999999999999987763
No 147
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=67.01 E-value=3 Score=36.34 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=40.4
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+++ +...||..||.-|..+.|++.+ +.-+++.|.+|.+..+|.+.
T Consensus 14 ~l~v-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~y 59 (169)
T 3l0w_B 14 TLEV-ESSDTIDNVKSKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (169)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCTT-TEEEEETTEECCTTSBGGGG
T ss_pred EEEe-CCCCCHHHHHHHHHHHHCcCHH-HEEEEECCccccCcCcHHHc
Confidence 4678 8899999999999999999986 55788999999999998875
No 148
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.36 E-value=4.3 Score=33.82 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=38.5
Q ss_pred eeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 286 VKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 286 ~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+ +...+|..||..|+.+++++.+ +.-|++.|.+|.+.-||.+.
T Consensus 33 v-~~d~TV~dLKe~ls~~~~iP~e-~qrLIy~GKiLKD~eTL~~~ 75 (118)
T 2daf_A 33 F-KVDTILKYLKDHFSHLLGIPHS-VLQIRYSGKILKNNETLVQH 75 (118)
T ss_dssp E-CSSSCSHHHHHHHHHHHTCCTT-TEEEEETTEEECSSCCHHHH
T ss_pred e-CCCCcHHHHHHHHHhhhCCChH-HEEEEECCeEcCCcchHHHc
Confidence 5 8899999999999999999986 55589999999999999864
No 149
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.71 E-value=3.8 Score=31.83 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=37.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHh---CCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKL---NLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL---~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +...||..||+.|..++ |++. ++.-+++.|..|.+..||.+.
T Consensus 14 ~~~v-~~~~TV~~LK~~I~~~~~~~gip~-~~qrLi~~Gk~L~D~~tL~~y 62 (95)
T 1uel_A 14 KIDI-DPEETVKALKEKIESEKGKDAFPV-AGQKLIYAGKILNDDTALKEY 62 (95)
T ss_dssp EEEC-CTTSBHHHHHHHHHHHHCTTTCCT-TTEEEEETTEECCTTSBGGGG
T ss_pred EEEE-CCCCHHHHHHHHHHhhcccCCCCh-hhEEEEECCEECCCcCcHHHC
Confidence 4677 78899999999999994 6775 477788999999988887653
No 150
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=64.22 E-value=2.6 Score=33.25 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=48.6
Q ss_pred CeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 259 PIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 259 ~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
.|-+.+. .|.+. .-+++| .-.-++..|+..++.|.+++. .++-+++.|+.|.+..|+.++-
T Consensus 7 ~i~ikVk---~~~g~-------~i~~~v-~~~t~l~kl~~~y~~~~gi~~-~~~rf~FdG~~l~~~~Tp~dl~ 67 (94)
T 2io1_B 7 HINLKVA---GQDGS-------VVQFKI-KRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLE 67 (94)
T ss_dssp EEEEEEE---CTTSC-------EEEEEE-ETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTTT
T ss_pred eEEEEEE---CCCCC-------EEEEEE-CCCCHHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHcC
Confidence 3666666 34332 236788 677899999999999999987 5899999999999999988763
No 151
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.20 E-value=5 Score=29.41 Aligned_cols=42 Identities=26% Similarity=0.704 Sum_probs=29.1
Q ss_pred ccCcccccccccce--ecCCCCCcccHHHHHHHhhccCCCcccCCC
Q 017653 19 MTCPLCSKLFRDAT--TISECLHSFCRKCIYEKITEEEIDSCPVCN 62 (368)
Q Consensus 19 L~CpIC~~l~~dPv--~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr 62 (368)
..|--|+..|.+.. .-..|++.||..| ..+..+....||-|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC--D~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC--DVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH--HHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccch--hHHHHhhccCCcCCC
Confidence 45888888885432 2347999999999 334334567799883
No 152
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=63.40 E-value=4.3 Score=36.30 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=40.4
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.+ +...||..||.-|..+.+++.+ +.-+++.|.+|.+..||.+.
T Consensus 119 ~l~V-~~s~TV~~LK~kI~~~~gIp~~-~QrLi~~Gk~L~D~~tL~dy 164 (189)
T 3q3f_A 119 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 164 (189)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GCCEEETTEECCTTCBGGGG
T ss_pred EEEe-CCCCcHHHHHHHHHhccCCCHH-HEEEEECCEECCCCCCHHHC
Confidence 4788 8899999999999999999875 56788999999999888764
No 153
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=63.29 E-value=2.8 Score=32.99 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=41.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
+++| ...-++.-|+...+.|.|++. .++-+++.|+.|.+..|+.++-
T Consensus 19 ~~~v-k~~t~l~kl~~~y~~~~gi~~-~~~rf~FdG~~l~~~~Tp~dl~ 65 (91)
T 2io0_B 19 QFKI-KRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLE 65 (91)
T ss_dssp EEEE-ETTSCTHHHHHHHHHHTTCCS-TTEEEEETTEECCTTCCTTTTT
T ss_pred EEEE-CCCChHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHcC
Confidence 7888 678899999999999999987 6899999999999999987763
No 154
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=62.85 E-value=3.9 Score=33.75 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=38.6
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||+-|..+.|++.+ +.-+++.|..+.+..||.+.
T Consensus 90 ~~~v-~~~~tv~~lK~~i~~~~gi~~~-~qrL~~~g~~L~d~~tL~~~ 135 (152)
T 3b08_A 90 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 135 (152)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEe-CCCCcHHHHHHHHHHHhCcChh-hEEEEECCEECCCCCCHHHc
Confidence 4677 7889999999999999999864 66788999999888777643
No 155
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=62.63 E-value=4.4 Score=34.10 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=39.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+.+ +.+.||..||+-|..+.|++.+ +.-+++.|..|.+..||.+.
T Consensus 95 ~~~v-~~~~tV~~lK~~i~~~~gip~~-~q~L~~~G~~L~d~~tL~~y 140 (159)
T 3rt3_B 95 TYEV-RLTQTVAHLKQQVSGLEGVQDD-LFWLTFEGKPLEDQLPLGEY 140 (159)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHHTCCGG-GEEEEETTEECCTTSBGGGG
T ss_pred EEEe-CCCCCHHHHHHHHHHHHCCCHH-HEEEEECCeecCCCCCHHHc
Confidence 4688 8899999999999999999874 66788999999998888653
No 156
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=62.21 E-value=4.1 Score=33.60 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=39.1
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.+++ +...||..||+-|..+.|++.+ +.-+++.|..+.+..||.+.
T Consensus 14 ~~~v-~~~~tv~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~tL~~~ 59 (152)
T 3b08_A 14 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEE-CCCCCHHHHHHHHHHHHCcChH-HeEEEECCeECcCcccHHHh
Confidence 4677 7889999999999999999875 66788899999888887654
No 157
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=61.91 E-value=3.6 Score=32.02 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.4
Q ss_pred CCCccHHHHHHHH-HHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 288 DGRLPVSFIKRYI-VKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 288 ~~~~~v~~l~Kyl-~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
+.+-||..||..| ..+-|++.+ +.-+++.|..|.+..||.+.
T Consensus 21 ~~~~TV~~lK~~I~~~~~gip~~-~QrLi~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 21 SPSDTILQIKQHLISEEKASHIS-EIKLLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CTTCBHHHHHHHHHHTTSCSSST-TEEEEETTEECCTTCBHHHH
T ss_pred CCCCcHHHHHHHHHHHhcCCChH-HEEEEECCEECcCcCCHHHc
Confidence 4889999999999 888898875 66788999999999998754
No 158
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=61.84 E-value=3.9 Score=34.00 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=38.9
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
||.+ +..-||..||+-|..+.|++.+ +.-+++.|..|.+.-||.+
T Consensus 15 ~ldv-e~sdTV~~lK~kI~~~~giPp~-qQrLI~~Gk~LeD~kTL~d 59 (118)
T 4ajy_B 15 FTDA-KESSTVFELKRIVEGILKRPPD-EQRLYKDDQLLDDGKTLGE 59 (118)
T ss_dssp EEEE-ETTSBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTTT
T ss_pred EEEc-CCCChHHHHHHHHHHHHCCCHH-HeEEEeCCeECCCcCCHHH
Confidence 6677 6788999999999999999986 4567799999999999875
No 159
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=61.68 E-value=4.4 Score=34.74 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=40.3
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|+| +...||..||+.|..+.|++.+ +.-+++.|..+.+..+|.+.
T Consensus 34 ~l~v-~~~~tV~~lK~~I~~~~gip~~-~QrL~~~g~~L~d~~tL~~~ 79 (172)
T 3u30_A 34 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 79 (172)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTCBTGGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcChH-HEEEEECCccccccCCHhHc
Confidence 4788 8999999999999999999886 45778999999999888764
No 160
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=61.35 E-value=6.4 Score=30.27 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=37.5
Q ss_pred eeeCCCccHHHHHHHHHHHhCCCchhhhhhh---hcCCcCCCCccHHHH
Q 017653 285 RVKDGRLPVSFIKRYIVKKLNLISEAEVEIS---LRGQPVLSTLELHNL 330 (368)
Q Consensus 285 r~~~~~~~v~~l~Kyl~~KL~l~~e~evei~---c~g~~~~~~~~l~~i 330 (368)
.+ +...||..||.-|..+.|++.+ +.-|+ +.|.++.+..+|.++
T Consensus 23 ~v-~~~~TV~~lK~~I~~~~gip~~-~QkLi~~k~~Gk~L~D~~~L~~~ 69 (90)
T 1v5t_A 23 TL-SEDDTVLDLKQFLKTLTGVLPE-RQKLLGLKVKGKPAENDVKLGAL 69 (90)
T ss_dssp SC-CSSSBHHHHHHHHHHHTCCCTT-TCEEESCEETTEECCTTSBHHHH
T ss_pred Ee-CCCCCHHHHHHHHHHHHCcCHH-HeEEEeeccCCcCcCCCCCHHHc
Confidence 66 7889999999999999999875 44566 899999988888764
No 161
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=60.75 E-value=3.6 Score=32.30 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=48.8
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
..|-+.+. .|.+. .-+++| .-.-++..|+...+.+.|++. .++-+++.|+.|.+..|+.++
T Consensus 16 ~~i~ikV~---~~~g~-------~i~~~v-~~~t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~~Tp~dl 76 (93)
T 2d07_B 16 DHINLKVA---GQDGS-------VVQFKI-KRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQL 76 (93)
T ss_dssp CEEEEEEE---CTTSC-------EEEEEE-ETTSCHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTT
T ss_pred CeEEEEEE---CCCCC-------EEEEEE-ccCCHHHHHHHHHHHHhCCCc-cceEEEECCEEcCCCCCHHHc
Confidence 45777777 44442 137888 667799999999999999987 488999999999999888765
No 162
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=59.31 E-value=1.9 Score=37.14 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.+ +...||..|+.-|..+.+++.+ +.-+++.|..|.++.||.+.
T Consensus 14 ~l~V-~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 14 TLEV-ESSDTIDNVKSKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ------------------------------------------------
T ss_pred EEEE-CCCCCHHHHHHHHHHHhCCCHH-HEEEEECCEEccccCcHHHc
Confidence 3667 7889999999999999999885 55788999999998888764
No 163
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=58.73 E-value=7.5 Score=31.05 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=48.8
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
..|-+.++ .|.+. ..-|++| .-.-++.-|.+..+++.+++.. .|-+++.|+.|.+..|..+|
T Consensus 24 ~~I~LkV~---~~dg~------~~v~fkI-k~~t~l~kLm~aY~~~~g~~~~-~vrF~FDG~rI~~~~TP~dL 85 (97)
T 2jxx_A 24 QQLQLRVQ---GKEKH------QTLEVSL-SRDSPLKTLMSHYEEAMGLSGR-KLSFFFDGTKLSGRELPADL 85 (97)
T ss_dssp SEEEEEEE---ESSSS------CEEEEEE-ETTSCHHHHHHHHHHHTTCSSS-CCEEEETTEECCSCSCHHHH
T ss_pred CeEEEEEE---cCCCC------EEEEEEE-CCCChHHHHHHHHHHHHCCCcc-cEEEEECCEEcCCCCCHHHc
Confidence 34777777 44331 1236888 5577999999999999999875 89999999999999999887
No 164
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.52 E-value=6.2 Score=30.92 Aligned_cols=43 Identities=9% Similarity=0.194 Sum_probs=36.7
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
|.+ +...||..||..|..+.|++.+ +.-|++.|.+|.+. +|.+
T Consensus 22 l~v-~~~~TV~~lK~~I~~~tgip~~-~QkLi~~Gk~L~D~-tL~~ 64 (96)
T 1wgg_A 22 VEL-NTDEPPMVFKAQLFALTGVQPA-RQKVMVKGGTLKDD-DWGN 64 (96)
T ss_dssp EEE-ESSSCHHHHHHHHHHHTCCCTT-TSCCEETTEECCSS-CCCS
T ss_pred EEE-CCCCcHHHHHHHHHHHHCcCHH-HeEEEECCcCCCCC-CHHH
Confidence 678 8899999999999999999975 55577999999887 7654
No 165
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=56.96 E-value=4.3 Score=32.28 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=36.3
Q ss_pred eeeCCCccHHHHHHHH-HHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 285 RVKDGRLPVSFIKRYI-VKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 285 r~~~~~~~v~~l~Kyl-~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
.| +.+.||..||..| ..+-|++.+ +.-+++.|..|.+..+|.+
T Consensus 37 ~v-~~~~TV~~lK~~I~~~~~gip~~-~QrLi~~Gk~L~D~~tL~d 80 (98)
T 4a20_A 37 DF-SPSDTILQIKQHLISEEKASHIS-EIKLLLKGKVLHDNLFLSD 80 (98)
T ss_dssp EE-CTTCBHHHHHHHHHHTTSCSCGG-GEEEEETTEEECTTCBGGG
T ss_pred ec-CCCChHHHHHHHHHHHhcCCChh-hEEEEECCEECcCcCCHHH
Confidence 55 7899999999999 777787775 6678899999999998876
No 166
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=56.46 E-value=19 Score=31.09 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=42.8
Q ss_pred eCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcC
Q 017653 287 KDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTS 338 (368)
Q Consensus 287 ~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~ 338 (368)
.||++.+..-.+||..-|+..+.++..=...|. ....|+.+||+.|....
T Consensus 28 ~dG~Id~~Es~~Flre~~~~~d~~~k~~~~h~~--D~~Isv~eLw~~W~~s~ 77 (150)
T 2l5y_A 28 KDGGIEVEESDEFIREDMKYKDATNKHSHLHRE--DKHITIEDLWKRWKTSE 77 (150)
T ss_dssp CSSCBCHHHHHHHHHHHTTTTCSHHHHHHHTTT--CCCBCHHHHHHHHHTSH
T ss_pred CCCCCcHHHHHHHHHHHhcccCchhHHhhhcCC--CCeeeHHHHHHHHccCc
Confidence 389999999999999999988877777677775 48999999999997654
No 167
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=55.81 E-value=5.6 Score=31.00 Aligned_cols=47 Identities=6% Similarity=0.122 Sum_probs=43.4
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
++.| .-++||+-|.|--+.+-+++.+.-|-+.+.|..|.|..|++++
T Consensus 23 ~f~I-~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dl 69 (82)
T 3goe_A 23 RLSI-PVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQST 69 (82)
T ss_dssp EEEE-ETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGS
T ss_pred EEEe-cCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhh
Confidence 6778 7899999999999999999998899999999999999998764
No 168
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=54.75 E-value=7.1 Score=33.42 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=39.6
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~ 329 (368)
-.|++ +...||..||+-|..+.|++.+ +..+++.|..+.+..||.+
T Consensus 109 ~~l~v-~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g~~L~D~~tL~~ 154 (172)
T 3u30_A 109 ITLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSD 154 (172)
T ss_dssp EEEEE-CTTCBHHHHHHHHHHHHCCCGG-GCCEEETTEECCTTSBSGG
T ss_pred eeEEe-cCCCCHHHHHHHHHHHhCCCce-eEEEEECCccCCCCCcHHH
Confidence 35788 8899999999999999999874 5678899999999888865
No 169
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=54.56 E-value=7.6 Score=32.62 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=38.8
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhh-cCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISL-RGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c-~g~~~~~~~~l~~i 330 (368)
.|.+ +...||..||+-|..+.|++.+.|-=|.+ .|..+.+..||.+.
T Consensus 16 ~l~v-~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y 63 (159)
T 3rt3_B 16 QVSL-SSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 63 (159)
T ss_dssp EEEC-CTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG
T ss_pred EEEe-CCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc
Confidence 4677 88999999999999999999865543337 79999999888764
No 170
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=53.09 E-value=5.2 Score=32.46 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=47.9
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 257 FGPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 257 ~~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
...|-+.+.. .+. .-+++| ...-++.-|+...+.|.|++. .++-+++.|+.|.+..|+.++
T Consensus 29 ~~~I~IkV~~----~g~-------~i~fkI-k~tt~l~kL~~ay~ek~gi~~-~~~rF~FdG~rl~~~~Tp~dl 89 (106)
T 2eke_C 29 ETHINLKVSD----GSS-------EIFFKI-KKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDL 89 (106)
T ss_dssp CSEEEEEEEC----SSC-------EEEEEE-ETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTT
T ss_pred CCeEEEEEec----CCc-------EEEEEe-CCCCHHHHHHHHHHHHhCCCc-ccEEEEECCeEcCCCCCHHHc
Confidence 3457777762 221 237788 667789999999999999987 599999999999999888765
No 171
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=52.73 E-value=5 Score=33.20 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=49.7
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
..|-+.++ .|.+. .+ |++| .-..++.-|++..+.+.|++. .++-+++.|+.|.+..|..++
T Consensus 39 ~~I~LKV~---~qdg~----ev---~fkI-k~tt~L~KLm~aY~er~Gl~~-~~irFlFDG~rI~~~~TP~dL 99 (115)
T 3kyd_D 39 EYIKLKVI---GQDSS----EI---HFKV-KMTTHLKKLKESYCQRQGVPM-NSLRFLFEGQRIADNHTPKEL 99 (115)
T ss_dssp CEEEEEEE---CTTSC----EE---EEEE-ETTSCTHHHHHHHHHHHTCCT-TSEEEEETTEECCTTCCTTTT
T ss_pred CeEEEEEE---cCCCC----EE---EEEE-ccCChHHHHHHHHHHHhCCCh-hhEEEEECCeECCCCCCHHHc
Confidence 45888877 55553 22 7889 667899999999999999975 699999999999999887765
No 172
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.64 E-value=11 Score=27.07 Aligned_cols=35 Identities=17% Similarity=0.557 Sum_probs=26.5
Q ss_pred ccccCcccccccccc-eecCCCCCcccHHHHHHHhhc
Q 017653 17 ACMTCPLCSKLFRDA-TTISECLHSFCRKCIYEKITE 52 (368)
Q Consensus 17 e~L~CpIC~~l~~dP-v~l~~CgHtFC~~CI~~~l~~ 52 (368)
+.|.|..|...|..- ... .=+..||..|..+.+..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYA-VERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEE-SSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCCcCcCEe-eCCeEECHHHHHHHHcc
Confidence 579999999888643 334 56789999999887743
No 173
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.44 E-value=2.6 Score=27.63 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=13.5
Q ss_pred ccccCcccccccccceec
Q 017653 17 ACMTCPLCSKLFRDATTI 34 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l 34 (368)
+-|+||+|...|..+-.+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 358899998888776554
No 174
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=48.81 E-value=16 Score=31.28 Aligned_cols=46 Identities=24% Similarity=0.511 Sum_probs=29.2
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhh---------ccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKIT---------EEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~---------~~~~~~CP~Cr~ 63 (368)
.+..|.+|.+-=.--.-- .|-..||..||..-+. ..+...||.|..
T Consensus 62 ~~d~C~vC~~GG~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345677775422111111 5888999999986542 346789999973
No 175
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.11 E-value=4.4 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=36.8
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCC-ccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLST-LELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~-~~l~~i 330 (368)
.++| +...||..||+.|..+. ..+.-+++.|..|.+. .+|.+.
T Consensus 21 ~~~v-~~~~TV~~LK~~i~~~~----~~~qrLi~~Gk~L~D~~~tL~~y 64 (95)
T 1wia_A 21 LAVA-RPEDTVGTLKSKYFPGQ----ESQMKLIYQGRLLQDPARTLSSL 64 (95)
T ss_dssp EEEE-CSSSBHHHHHHHHSSST----TTTCEEEETTEECCCSSCBTTTT
T ss_pred EEEE-CCCCcHHHHHHHHHhhC----cCcEEEEECCEEccCCcCCHHHc
Confidence 4778 88999999999999887 4678889999999988 888764
No 176
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=46.86 E-value=8.5 Score=33.55 Aligned_cols=46 Identities=17% Similarity=0.530 Sum_probs=35.3
Q ss_pred ccccCccccccccc---ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRD---ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~d---Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
++|.|..|...|.. .... .=|..||..|..+.+.. ...|..|...+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~--~~~C~~C~~~I 79 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGN--SGACSACGQSI 79 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSC--CEECTTTCCEE
T ss_pred cCcccCCCCcccccCCceEEE-eCCcccccccccccccc--CCccccCCCcc
Confidence 68999999998875 4444 56889999999887732 12699999876
No 177
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=46.80 E-value=11 Score=30.22 Aligned_cols=44 Identities=14% Similarity=0.427 Sum_probs=34.3
Q ss_pred ccccCccccccccc-ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.|.|..|...|.. +... .=|..||..|..+.+. ..|..|+..+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~----~~C~~C~~~I 73 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVM-VNDKPVCKPCYVKNHA----VVCQGCHNAI 73 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEE-ETTEEEEHHHHHHHSC----CBCTTTCSBC
T ss_pred CCCCcCCCCCCCCcCEEEe-ECCEEechHHhCcCcC----ccCcccCCcC
Confidence 67999999998875 3334 5688999999877653 4699999876
No 178
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.36 E-value=11 Score=30.52 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=35.7
Q ss_pred ccccCcccccccc---cceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 17 ACMTCPLCSKLFR---DATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 17 e~L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
++|.|..|...|. ..... .=+..||..|..+.+.. .-.|-.|...+.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGN--SGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCC--CCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCC--CCccccCCCCcC
Confidence 6799999999986 33444 56789999999887732 226999998763
No 179
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=45.11 E-value=4.5 Score=36.28 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELH 328 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~ 328 (368)
.|.| +.+.||..|+..|..+.|++.+ +.-+++.|.+|.+..||.
T Consensus 14 tLeV-~~sdTV~~LK~kI~~keGIP~~-qQRLIf~GK~LeD~~TLs 57 (189)
T 2xzm_9 14 IYTL-EQGTSVLDLKSQISQDMGFEID-MMTLVNNGFIAPNTELVT 57 (189)
T ss_dssp ----------------------------------------------
T ss_pred EEEE-CCcChHHHHHHHHHHHhCcChh-HEEEEecCeECCCCCccc
Confidence 3667 7789999999999999999985 667789999999888776
No 180
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.76 E-value=11 Score=30.87 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=39.5
Q ss_pred ceeeeeCCCccHHHHHHHHHH------HhCCC-chhhhhhhhcCCcCCCCccHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVK------KLNLI-SEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~------KL~l~-~e~evei~c~g~~~~~~~~l~~ 329 (368)
.-|.| +.+.||..||..|.. |=+++ +.+++-++|.|.+|.+..||.+
T Consensus 29 ~~lev-~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~ 82 (116)
T 1wgh_A 29 KEFLF-SPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 82 (116)
T ss_dssp EEEEE-CTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTT
T ss_pred EEEEE-CCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 34678 899999999999999 44653 5678999999999999999875
No 181
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=43.20 E-value=13 Score=31.33 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhh
Q 017653 276 LPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAE 311 (368)
Q Consensus 276 lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~e 311 (368)
||--...=+++ |-++||+.|...|++|+||.+..|
T Consensus 18 llDg~~ktl~V-D~S~~V~~lv~~Ic~kigI~n~~e 52 (128)
T 2kc2_A 18 MLDGTVKTIMV-DDSKTVTDMLMTICARIGITNHDE 52 (128)
T ss_dssp CTTSCEEEEEE-EECSSHHHHHHHHHHHHTCCCCSS
T ss_pred cCCCCEEEEEe-CCCcCHHHHHHHHHHHhCCCCccc
Confidence 44455567888 999999999999999999997644
No 182
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=43.11 E-value=10 Score=31.60 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=39.9
Q ss_pred ceeeeeCCCccHHHHHHHHHH------HhCCC-chhhhhhhhcCCcCCCCccHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVK------KLNLI-SEAEVEISLRGQPVLSTLELHN 329 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~------KL~l~-~e~evei~c~g~~~~~~~~l~~ 329 (368)
.-|.+ +.+.||..||..|.. |=+++ +.+++-++|.|.+|.+..||.+
T Consensus 30 ~~lev-~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~ 83 (125)
T 2gow_A 30 KEFLF-SPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 83 (125)
T ss_dssp EEEEE-CTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGG
T ss_pred EEEEe-CCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 34677 889999999999999 55665 5678999999999999999875
No 183
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=42.36 E-value=22 Score=28.38 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=41.0
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
-|++| --.-+..-|++..+++.|+.. +.|-+++.|+.|.+..|...|
T Consensus 33 v~FkI-K~tt~l~KL~~aYc~r~gv~~-~sirFlfDG~rI~~~~TP~~L 79 (95)
T 2l76_A 33 VRLPL-RMSEPLQSVVDHMATHLGVSP-SRILLLFGETELSPTATPRTL 79 (95)
T ss_dssp EEEEE-CSSSCTHHHHHHHHHHHTSCG-GGEEEEETTEECCTTSCHHHH
T ss_pred EEEEE-ecCChHHHHHHHHHhhcCCCh-hhEEEEECCcCCCCCCCHhHc
Confidence 47788 446678889999999999987 699999999999999998877
No 184
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=42.30 E-value=23 Score=30.13 Aligned_cols=44 Identities=14% Similarity=0.568 Sum_probs=34.3
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
++|.|..|...|..-... .=|..||..|..+.+. ..|..|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~----~~C~~C~~~I 75 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG----TKCAACQLGI 75 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHHS----CBCTTTCCBC
T ss_pred ccCccCCCCCcCCCCCcc-cCCeeeeccccccccc----cccccccccc
Confidence 689999999888764444 4688999999987763 3588888765
No 185
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=41.76 E-value=22 Score=28.04 Aligned_cols=51 Identities=25% Similarity=0.515 Sum_probs=35.5
Q ss_pred chhcccccccCccccccccc---ceecCCCCCcccHHHHHHH--hhc------------cCCCcccCCCc
Q 017653 11 NREKLVACMTCPLCSKLFRD---ATTISECLHSFCRKCIYEK--ITE------------EEIDSCPVCNT 63 (368)
Q Consensus 11 ~~~~l~e~L~CpIC~~l~~d---Pv~l~~CgHtFC~~CI~~~--l~~------------~~~~~CP~Cr~ 63 (368)
..+.+..+-.|.||..+-.+ |-.+ |+-.|-..|+.+. +.. .....||.|..
T Consensus 8 ~~e~~~~D~~C~VC~~~t~~~l~pCRv--C~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 8 PREPVVNDEMCDVCEVWTAESLFPCRV--CTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp SCCCCCCSCCCTTTCCCCSSCCSSCSS--SSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cccCCCCCcccCccccccccceecccc--ccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 45667788899999855433 4444 8999999999885 111 12478999963
No 186
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=38.96 E-value=12 Score=33.92 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=42.8
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
-|++| .-..++.-|++..+.+.||+. .+|-+++.|+.|.+..|..++-
T Consensus 69 V~FKI-KrtTpL~KLmeAYcERqGL~~-~sIRFLFDGqRI~~ddTPeDLd 116 (207)
T 3tix_A 69 IFFKI-KKTTPLRRLMEAFAKRQGKEM-DSLTFLYDGIEIQADQTPEDLD 116 (207)
T ss_dssp EEEEE-ETTSCTHHHHHHHHHHTTCCG-GGSCEEETTEECCSSCCTTTTT
T ss_pred EEEEE-ccCChHHHHHHHHHHHhCCCc-ccEEEEECCeecCCCCCHHHcC
Confidence 47888 668899999999999999987 7999999999999999988763
No 187
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=38.80 E-value=16 Score=34.99 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=39.4
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|++ +...||..||.-|..+.+++.+ +.-+++.|.+|.+..+|.+.
T Consensus 247 ~leV-~~s~TV~dLK~kI~~~~GIp~~-~QRLi~~Gk~L~D~~TLsdy 292 (307)
T 3ai5_A 247 TLEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 292 (307)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTSBTGGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHHCcChH-HEEEEeCCeecCCCCCHHHc
Confidence 5788 8899999999999999999875 66788899999888887654
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=38.61 E-value=13 Score=33.61 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=43.1
Q ss_pred ceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHH
Q 017653 282 CYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLI 331 (368)
Q Consensus 282 ~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~ 331 (368)
-+++| ...-++..|++..+.+.|++. .++-+++.|+.|.+..|..++-
T Consensus 41 v~fkI-k~~t~l~kL~~ay~er~Gi~~-~~~RF~FdG~rI~~~~TP~dL~ 88 (200)
T 3pge_A 41 IFFKI-KKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDLD 88 (200)
T ss_dssp EEEEE-CTTSCTHHHHHHHHHHHSSCG-GGEEEEETTEECCTTCCTTTTT
T ss_pred EEEEE-ecCCHHHHHHHHHHHHhCCCh-hhEEEEECCEEcCCCCCHHHcC
Confidence 47888 778899999999999999976 7999999999999999998874
No 189
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=38.26 E-value=9.4 Score=29.42 Aligned_cols=45 Identities=20% Similarity=0.540 Sum_probs=32.9
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.|.|..|...|........=+..||..|..+.+ ...|..|...+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~----~~~C~~C~~~I 76 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED----SPKCKGCFKAI 76 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC----CCBCSSSCCBC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc----CCccccCCCcc
Confidence 6799999998886542222467889999976543 35699998776
No 190
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.39 E-value=4.3 Score=35.18 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=33.0
Q ss_pred ccccCcccccccc----cceecCCCCCcccHHHHHHHhhccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLFR----DATTISECLHSFCRKCIYEKITEEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~~----dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~ 63 (368)
..-.|.+|...|. ...+-..|.|.+|..|-. +........|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4689999998652 344555899999999962 333345688988874
No 191
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.26 E-value=13 Score=26.60 Aligned_cols=35 Identities=23% Similarity=0.673 Sum_probs=24.7
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhh
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKIT 51 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~ 51 (368)
+.|.|..|...|..-.....=+..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 57889999887765322224677889999877664
No 192
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.53 E-value=19 Score=27.25 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=20.2
Q ss_pred ccccCccccccccc-ceecCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l 50 (368)
++|.|..|...|.. .... .=+..||..|..+.+
T Consensus 50 ~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVE-EKGALYCELCYEKFF 83 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEE-SSSCEECHHHHHHHT
T ss_pred cCCccCCCCCCCCCCEeEe-ECCEEECHHHHHHHc
Confidence 46777777766653 2222 456677777776655
No 193
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.20 E-value=22 Score=28.95 Aligned_cols=11 Identities=27% Similarity=1.087 Sum_probs=5.3
Q ss_pred cccCccccccc
Q 017653 18 CMTCPLCSKLF 28 (368)
Q Consensus 18 ~L~CpIC~~l~ 28 (368)
+|.|..|...|
T Consensus 88 CF~C~~C~~~L 98 (123)
T 2l4z_A 88 CLKCSSCQAQL 98 (123)
T ss_dssp TSBCTTTCCBG
T ss_pred ccCcCcCCCcc
Confidence 44454554444
No 194
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.34 E-value=20 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.512 Sum_probs=34.7
Q ss_pred ccccCccccccccc---ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRD---ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~d---Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.|.|..|...|.. +... .=|..||..|..+.+.. ...|..|...+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~--~~~C~~C~~~I 76 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQ--DGLCASCDKRI 76 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCC--CEECTTTCCEE
T ss_pred HHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCC--ccChhhcCCcc
Confidence 68999999998852 4444 46789999999887732 12699999876
No 195
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=34.74 E-value=14 Score=29.88 Aligned_cols=13 Identities=38% Similarity=0.945 Sum_probs=11.7
Q ss_pred cccHHHHHHHhhc
Q 017653 40 SFCRKCIYEKITE 52 (368)
Q Consensus 40 tFC~~CI~~~l~~ 52 (368)
.||+.|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999975
No 196
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=33.82 E-value=39 Score=36.30 Aligned_cols=51 Identities=25% Similarity=0.495 Sum_probs=36.9
Q ss_pred cccccCcccccccccc---------eecCCCCCcc--------------------cHHHHHHHhhcc------CCCcccC
Q 017653 16 VACMTCPLCSKLFRDA---------TTISECLHSF--------------------CRKCIYEKITEE------EIDSCPV 60 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dP---------v~l~~CgHtF--------------------C~~CI~~~l~~~------~~~~CP~ 60 (368)
.+.-+|+-|+.-+.+| +..+.||..| |..|-.+|-.-. +-..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 4567999999887775 2234688777 999998877432 2368999
Q ss_pred CCcccC
Q 017653 61 CNTDLG 66 (368)
Q Consensus 61 Cr~~l~ 66 (368)
|.-.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 997654
No 197
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.44 E-value=35 Score=26.19 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=33.1
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcC---Cc----CCCCccHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRG---QP----VLSTLELH 328 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g---~~----~~~~~~l~ 328 (368)
=+++ +...||..||.-|..+.|++.+ +.-+.+.| .+ +.+..+|.
T Consensus 22 ~~~v-~~~~TV~~lK~ki~~~~gip~~-~qrL~~~~~~g~~~~~l~~D~~tL~ 72 (95)
T 1v6e_A 22 EKRY-SRSLTIAEFKCKLELVVGSPAS-CMELELYGADDKFYSKLDQEDALLG 72 (95)
T ss_dssp EEEE-CTTSBHHHHHHHHHHHTCSCTT-TCBCEEECSSSCEEEECCCSSSBTT
T ss_pred EEEc-CccCHHHHHHHHHHHHHCCCHH-HeEEEEeCCCCccccccCCCcCCHh
Confidence 3688 8999999999999999999975 55566665 43 34555554
No 198
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.42 E-value=26 Score=24.90 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=25.4
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhh
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKIT 51 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~ 51 (368)
+.|.|..|...|........=+..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 57899999988864322224578899999887763
No 199
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=33.33 E-value=16 Score=29.59 Aligned_cols=13 Identities=38% Similarity=1.027 Sum_probs=11.7
Q ss_pred cccHHHHHHHhhc
Q 017653 40 SFCRKCIYEKITE 52 (368)
Q Consensus 40 tFC~~CI~~~l~~ 52 (368)
.||+.|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999975
No 200
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.68 E-value=46 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=34.7
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhh-cCCcCCCCccHHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISL-RGQPVLSTLELHNL 330 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c-~g~~~~~~~~l~~i 330 (368)
|.+ +.+.||..||.-|..|-|++.+.|. |+. .+..+.+..+|.++
T Consensus 23 v~v-~~~~TV~~LK~~I~~~tgIpp~~Qk-Li~~~~gkL~D~~tLs~~ 68 (100)
T 2dzm_A 23 VVL-EDTCTVGEIKQILENELQIPVSKML-LKGWKTGDVEDSTVLKSL 68 (100)
T ss_dssp EEE-ETTSBHHHHHHHHHHHHCCCTTTCC-EECCSSSCCCTTSBHHHH
T ss_pred EEE-CCCCcHHHHHHHHHHHHCCChhHeE-EEccCCCCCCCcCCHHHc
Confidence 677 7889999999999999999998665 443 33347777777655
No 201
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=32.57 E-value=16 Score=28.06 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=34.3
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhhhhhhh------cCCcCCCCccHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAEVEISL------RGQPVLSTLELH 328 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c------~g~~~~~~~~l~ 328 (368)
+|+ +-.+||..||.-|..+.|++.+.|-=|+. .|..+.+..||.
T Consensus 19 ~r~-~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~ 68 (86)
T 4b6w_A 19 KRY-GLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLG 68 (86)
T ss_dssp EEE-ETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGG
T ss_pred EEc-CccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHH
Confidence 688 99999999999999999999976654432 356666666664
No 202
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=32.36 E-value=24 Score=30.43 Aligned_cols=44 Identities=14% Similarity=0.568 Sum_probs=32.4
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
++|.|..|...|..-... .=|..||..|..+.+. ..|..|+..+
T Consensus 86 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~----~kC~~C~~~I 129 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG----TKCAACQLGI 129 (182)
T ss_dssp STTSCTTTCCCCSSCCEE-ETTEEECHHHHHHTTS----CCCTTTCCCC
T ss_pred ccCccCCCCCccCCCcee-ECCEeeecCccccccc----cccccCCCcc
Confidence 678999998877654333 4577899999877653 4699998765
No 203
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=32.35 E-value=61 Score=25.25 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=54.7
Q ss_pred eEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHH
Q 017653 260 IWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLIN 332 (368)
Q Consensus 260 iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~ 332 (368)
|.|-+.-. . =|.+|.+-|.| .-..|...+-||-+..++++..+-.=|+-.|-=+.|.+|--+|..
T Consensus 11 VtFkItlt----S---dpklpfkvlsV-PE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFl 75 (92)
T 1j0g_A 11 VSFKITLT----S---DPRLPYKVLSV-PESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFL 75 (92)
T ss_dssp EEEEEEET----T---STTCCEEEEEE-ETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHH
T ss_pred EEEEEEEc----c---CCCCCceEEec-CccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhh
Confidence 77766521 1 25677888999 889999999999999999999999999999999999999887754
No 204
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.28 E-value=15 Score=29.57 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=35.1
Q ss_pred eeeeCCCccHHHHHHHHHHHhCCCchhh--------------hhhhhcCCcCC-CCccHHH
Q 017653 284 LRVKDGRLPVSFIKRYIVKKLNLISEAE--------------VEISLRGQPVL-STLELHN 329 (368)
Q Consensus 284 lr~~~~~~~v~~l~Kyl~~KL~l~~e~e--------------vei~c~g~~~~-~~~~l~~ 329 (368)
|.| +.+.||..||+-|..+.+++.+.| .-+.+.|+.|. +.-||.+
T Consensus 22 v~V-~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d 81 (105)
T 1v2y_A 22 VVV-VQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 81 (105)
T ss_dssp EEE-CTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH
T ss_pred EEE-CCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH
Confidence 677 789999999999999999876433 35668888875 4577765
No 205
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.02 E-value=11 Score=28.90 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=20.3
Q ss_pred cCcccccccc-----cceecCCCCCcccHHHHHHH
Q 017653 20 TCPLCSKLFR-----DATTISECLHSFCRKCIYEK 49 (368)
Q Consensus 20 ~CpIC~~l~~-----dPv~l~~CgHtFC~~CI~~~ 49 (368)
-||-|...+. .+++-..|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998887553 23444349999998886554
No 206
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=30.99 E-value=22 Score=37.60 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=36.0
Q ss_pred cccccCcccccccccc---------eecCCCCCcc--------------------cHHHHHHHhhcc------CCCcccC
Q 017653 16 VACMTCPLCSKLFRDA---------TTISECLHSF--------------------CRKCIYEKITEE------EIDSCPV 60 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dP---------v~l~~CgHtF--------------------C~~CI~~~l~~~------~~~~CP~ 60 (368)
.+.-+|+-|+.-+.+| +..+.||..| |..|-.+|-.-. +-..||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 3567899999877765 2233688777 999998877532 2468999
Q ss_pred CCccc
Q 017653 61 CNTDL 65 (368)
Q Consensus 61 Cr~~l 65 (368)
|.-.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 98654
No 207
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.19 E-value=27 Score=24.78 Aligned_cols=33 Identities=21% Similarity=0.591 Sum_probs=24.1
Q ss_pred ccccCccccccccc-ceecCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l 50 (368)
+.|.|..|...|.. +... .=+..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTA-RDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEE-SSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEe-eCCeEECHHHHHHHh
Confidence 57899999887754 3333 457789999987766
No 208
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.51 E-value=22 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.493 Sum_probs=17.4
Q ss_pred ccccCccccccccc-ceecCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l 50 (368)
++|.|..|...|.. .... .=+..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 40 ECYVCTDCGTNLKQKGHFF-VEDQIYCEKHARERV 73 (79)
T ss_dssp TTTSCSSSCCCHHHHCCEE-SSSCEECHHHHHHHH
T ss_pred CcCeeCCCCCCCCCCCeEe-ECCEEECHHHHHHHh
Confidence 45666666665543 2222 345566666665554
No 209
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=29.19 E-value=34 Score=26.70 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=44.8
Q ss_pred CCCCcCCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhc--CC----cCCCCcc
Q 017653 253 FDGRFGPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLR--GQ----PVLSTLE 326 (368)
Q Consensus 253 ~~~~~~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~--g~----~~~~~~~ 326 (368)
.+....-|.+.+..+..+. ...=+++ +...||..||.-|..+.|++.+.| -+.+. |. .+.+..|
T Consensus 9 ~~~~~~~v~l~It~s~~~~--------~~~~~~v-~~~~TV~~LK~kI~~~~GiP~~~Q-rL~~~~~g~~~~~L~~D~~t 78 (95)
T 2kjr_A 9 SHGKSDFIKVNVSNSHNDA--------VAFEVKL-AKDLTVAQLKTKLEILTGGCAGTM-KVQVFKGDTCVSTMDNNDAQ 78 (95)
T ss_dssp CCCCCCEEEEEEEESSCSC--------EEEEEEE-ETTCBHHHHHHHHHHHHCSCTTTE-EEEEEETTEEEEECCCTTSB
T ss_pred ccCCCCeEEEEEEECCCCc--------eEEEEEe-CccCHHHHHHHHHHHHHCcCHHHe-EEEEecCCcccceeCCCCCC
Confidence 3445566888877544321 0122677 889999999999999999998655 44444 43 2367777
Q ss_pred HHH
Q 017653 327 LHN 329 (368)
Q Consensus 327 l~~ 329 (368)
|.+
T Consensus 79 L~~ 81 (95)
T 2kjr_A 79 LGY 81 (95)
T ss_dssp HHH
T ss_pred HhH
Confidence 754
No 210
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.17 E-value=19 Score=25.89 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=22.9
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l 50 (368)
+.|.|..|...|..-.....=+..||..|..+.+
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCccc
Confidence 5788999988776432222467788888876543
No 211
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=28.83 E-value=42 Score=26.34 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=41.3
Q ss_pred CCeEEEEEecCCCCCCCCCCCCccceeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcC---Cc----CCCCccHHH
Q 017653 258 GPIWFSLVASDEQEGDEPLPQISSCYLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRG---QP----VLSTLELHN 329 (368)
Q Consensus 258 ~~iwf~l~~~~~q~~~~~lp~i~~~ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g---~~----~~~~~~l~~ 329 (368)
.-|.|.+..+..+. ...=+++ +..+||..||.-|..+.|++.+.| -+.+.| .. +.+..||.+
T Consensus 13 ~~v~l~It~s~~~~--------~~~e~~v-~~~~TV~~LK~kIe~~~Gip~~~Q-rLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHANLKS--------FSADARF-SPQMSVEAVKEKLWKKCGTSVNSM-ALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETTSSC--------CCEEEEE-CTTCCHHHHHHHHHHHHCCCTTSE-EEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECCCCc--------eEEEEEe-CCCChHHHHHHHHHHHHCcCHHHe-EEEEecCCCcccceecCCcCCHHH
Confidence 34777777544321 1123788 999999999999999999998654 455555 33 355556543
No 212
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.68 E-value=19 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=21.7
Q ss_pred ccccCccccccccc-ceecCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l 50 (368)
+.|.|..|...|.. .... .=+..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 30 EHFVCAKCEKPFLGHRHYE-RKGLAYCETHYNQLF 63 (66)
T ss_dssp TTCBCTTTCCBCSSSCCEE-ETTEEECHHHHHHHC
T ss_pred CcCEECCCCCCCCCCceEe-ECCcEECHHHHHHHh
Confidence 56888888876654 2333 456778888876554
No 213
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=28.38 E-value=24 Score=37.87 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=35.0
Q ss_pred ccccCcccccccccce---------ecCCCCCcc--------------------cHHHHHHHhhcc------CCCcccCC
Q 017653 17 ACMTCPLCSKLFRDAT---------TISECLHSF--------------------CRKCIYEKITEE------EIDSCPVC 61 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv---------~l~~CgHtF--------------------C~~CI~~~l~~~------~~~~CP~C 61 (368)
+.-+|+-|+.-+.+|- ..+.||..| |..|-.+|-.-. +-..||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 5578999998777652 223677655 999998877532 23679999
Q ss_pred Cccc
Q 017653 62 NTDL 65 (368)
Q Consensus 62 r~~l 65 (368)
.-.+
T Consensus 190 GP~l 193 (761)
T 3vth_A 190 GPSL 193 (761)
T ss_dssp SCCE
T ss_pred CCee
Confidence 8655
No 214
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=27.57 E-value=34 Score=29.47 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=41.1
Q ss_pred CCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHHHHhhcC
Q 017653 288 DGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLINWWVQTS 338 (368)
Q Consensus 288 ~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~~w~~~~ 338 (368)
||++.|..-.+||..-|+..+..+-+=.+.|. ....|+.+||+.|....
T Consensus 29 dG~Id~~Es~~flredl~~~d~~~~~~~fh~~--D~~Isv~eLw~~W~~s~ 77 (150)
T 2k60_A 29 NGDVDVEESDEFLREDLNYHDPTVKHSTFHGE--DKLISVEDLWKAWKSSE 77 (150)
T ss_dssp SSEECTTTTTTHHHHHTTSSCTHHHHHHHTSS--SCCEEHHHHHHHHHHSH
T ss_pred CCcccHHHHHHHHHHHhccccchhhhhcccCC--CCeeeHHHHHHHhccCc
Confidence 89999999999999999888766666677774 57999999999997654
No 215
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=27.52 E-value=8.1 Score=29.46 Aligned_cols=33 Identities=27% Similarity=0.577 Sum_probs=22.2
Q ss_pred cccCcc--cccccc-----cceecC-----CCCCcccHHHHHHHh
Q 017653 18 CMTCPL--CSKLFR-----DATTIS-----ECLHSFCRKCIYEKI 50 (368)
Q Consensus 18 ~L~CpI--C~~l~~-----dPv~l~-----~CgHtFC~~CI~~~l 50 (368)
..-||- |...+. ..+.-. .|++.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 567886 876553 123333 589999999976654
No 216
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.09 E-value=42 Score=25.32 Aligned_cols=34 Identities=12% Similarity=0.395 Sum_probs=24.1
Q ss_pred ccccCcccccccccc-eecCCCCCcccHHHHHHHhh
Q 017653 17 ACMTCPLCSKLFRDA-TTISECLHSFCRKCIYEKIT 51 (368)
Q Consensus 17 e~L~CpIC~~l~~dP-v~l~~CgHtFC~~CI~~~l~ 51 (368)
++|.|..|...|..- ... .=+..||..|..+.+.
T Consensus 41 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYAS-LHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCC-SSSCCCCHHHHHHHSC
T ss_pred CCCeeCCCCCCCCCCCcEe-ECCEEECHHHHHHHhC
Confidence 578888888877653 333 4567889888877663
No 217
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.57 E-value=19 Score=30.34 Aligned_cols=47 Identities=21% Similarity=0.545 Sum_probs=30.4
Q ss_pred ccccCcccccccc----cceecCCCCCcccHHHHHHHh--hccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLFR----DATTISECLHSFCRKCIYEKI--TEEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~~----dPv~l~~CgHtFC~~CI~~~l--~~~~~~~CP~Cr~ 63 (368)
..-.|.+|...|. ....-..|.|.+|..|-.... .......|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 5678999998762 233445799999999954221 1113467888874
No 218
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.70 E-value=32 Score=29.85 Aligned_cols=35 Identities=23% Similarity=0.580 Sum_probs=26.7
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHhh
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKIT 51 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~ 51 (368)
+.|.|..|...|..-.....=+..||..|..+.+.
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 78999999988876432224577899999988774
No 219
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.69 E-value=5.8 Score=32.03 Aligned_cols=41 Identities=27% Similarity=0.523 Sum_probs=26.9
Q ss_pred cccCcccccccccceecCCCCCcccHHHHHHHhhccCCCcccCCCcccC
Q 017653 18 CMTCPLCSKLFRDATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDLG 66 (368)
Q Consensus 18 ~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l~ 66 (368)
...||.|+..+.. . =++.+|..|-..+. ....||.|..+|.
T Consensus 32 ~~~CP~Cq~eL~~---~--g~~~hC~~C~~~f~---~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ---D--NGHARCRSCGEFIE---MKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE---E--TTEEEETTTCCEEE---EEEECTTTCSBCE
T ss_pred cccCccCCCccee---c--CCEEECccccchhh---ccccCcchhhHHH
Confidence 3899999977652 1 13445888854332 2367999998764
No 220
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=24.26 E-value=25 Score=34.47 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=37.6
Q ss_pred eeeeeCCCccHHHHHHHHHHH---hCCCchhhhhhhhcCCcCCCCccHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKK---LNLISEAEVEISLRGQPVLSTLELHNL 330 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~K---L~l~~e~evei~c~g~~~~~~~~l~~i 330 (368)
.|.| +...||..||+.|..+ -+++. .+.-|++.|..|.+..||.+.
T Consensus 21 ~leV-~~~~TV~~LK~~I~~~~~~~gip~-~~QrLiy~GK~L~D~~tL~dy 69 (368)
T 1oqy_A 21 KIRM-EPDETVKVLKEKIEAEKGRDAFPV-AGQKLIYAGKILSDDVPIRDY 69 (368)
T ss_dssp EECC-CTTCBHHHHHHHHHHHTCSSSCCS-TEEEEESSSSEECSSSBTTTT
T ss_pred EEEe-CCCChHHHHHHHHHHHhCcCCCCh-hheEEEECCeecCCcCCHHHc
Confidence 4677 7889999999999995 45776 467788999999998888754
No 221
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.03 E-value=35 Score=25.05 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=21.8
Q ss_pred ccccCcccccccccc-eecCCCCCcccHHHHHHHhh
Q 017653 17 ACMTCPLCSKLFRDA-TTISECLHSFCRKCIYEKIT 51 (368)
Q Consensus 17 e~L~CpIC~~l~~dP-v~l~~CgHtFC~~CI~~~l~ 51 (368)
+.|.|..|...|..- ... .=+..||..|..+.+.
T Consensus 42 ~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f~ 76 (82)
T 1x63_A 42 DCFTCSNCKQVIGTGSFFP-KGEDFYCVTCHETKFA 76 (82)
T ss_dssp TTCCCSSSCCCCTTSCEEE-ETTEEEEHHHHHHHTS
T ss_pred ccCchhhCCCccCCCccEe-eCCEEECHHHHHHHhC
Confidence 567788887776543 222 4566778888766653
No 222
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.89 E-value=25 Score=26.51 Aligned_cols=32 Identities=13% Similarity=0.371 Sum_probs=14.0
Q ss_pred cccCccccccccc-ceecCCCCCcccHHHHHHHh
Q 017653 18 CMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 18 ~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l 50 (368)
+|.|..|...|.. .... .=+..||..|..+.+
T Consensus 51 CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 51 CFVCADCNLNLKQKGYFF-VEGELYCETHARART 83 (89)
T ss_dssp TCCCSSSCCCTTTSCCEE-ETTEEECHHHHHHHS
T ss_pred CCEecCCCCCCCCCCeEe-ECCEEECHHHHHHHh
Confidence 4555555544432 2222 234445555554433
No 223
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.70 E-value=31 Score=24.55 Aligned_cols=33 Identities=18% Similarity=0.495 Sum_probs=23.4
Q ss_pred ccccCccccccccc-ceecCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l 50 (368)
+.|.|..|...|.. +... .=+..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVP-DKGAHYCVPCYENKF 65 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEE-ETTEEEEHHHHHHHT
T ss_pred ccCeECCCCCcCCCCccCC-cCCeEECHHHHHHHc
Confidence 57888888887765 3333 456788988887665
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.33 E-value=22 Score=31.90 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=22.5
Q ss_pred ccccccCcccccccc---cceecCCCCCcccHHHHHH
Q 017653 15 LVACMTCPLCSKLFR---DATTISECLHSFCRKCIYE 48 (368)
Q Consensus 15 l~e~L~CpIC~~l~~---dPv~l~~CgHtFC~~CI~~ 48 (368)
+.+.-.|.+|..-|. .-.---.||+.||..|...
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 345579999988764 1222226999999988643
No 225
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.26 E-value=31 Score=24.60 Aligned_cols=34 Identities=21% Similarity=0.560 Sum_probs=23.8
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHh
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKI 50 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l 50 (368)
+.|.|..|...|..-.....=+..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 32 TCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp TTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred cCCcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 5789999988776542221456788999987665
No 226
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.82 E-value=38 Score=24.54 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=31.7
Q ss_pred ccccCccccccccc-ceecCCCCCcccH-HHHHHHhhccCCCcccCCCcc
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCR-KCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~-~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
+.|.|..|...|.. +... .=+..||. .|..+.+. ..|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~cy~~~f~----~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAE-HEGKPYCNHPCYSAMFG----PKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEE-ETTEEEETTTHHHHHSS----CCCSSCCCS
T ss_pred CCCCccccCccCCCCceEC-cCCeEeeCHHHHHHHhC----ccCCCcCCc
Confidence 68999999988875 4444 56788999 69877663 358888754
No 227
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.78 E-value=30 Score=24.39 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=18.6
Q ss_pred ccccCcccccccccc-eecCCCCCcccHHHHHHH
Q 017653 17 ACMTCPLCSKLFRDA-TTISECLHSFCRKCIYEK 49 (368)
Q Consensus 17 e~L~CpIC~~l~~dP-v~l~~CgHtFC~~CI~~~ 49 (368)
+.|.|..|...|..- ... .=|..||..|..+.
T Consensus 38 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 38 QCFVCAQCFQQFPEGLFYE-FEGRKYCEHDFQML 70 (72)
T ss_dssp TTSSCTTTCCCCGGGCCEE-ETTEEECHHHHHHH
T ss_pred CCCcccCCCCCCCCCCeEe-ECCeEeCHHHHHHh
Confidence 467777777666542 222 34666777776544
No 228
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=22.65 E-value=18 Score=33.22 Aligned_cols=48 Identities=8% Similarity=0.139 Sum_probs=0.0
Q ss_pred eeeeeCCCccHHHHHHHHHHHhCCCchhhhhhhhcCCcCCCCccHHHHHH
Q 017653 283 YLRVKDGRLPVSFIKRYIVKKLNLISEAEVEISLRGQPVLSTLELHNLIN 332 (368)
Q Consensus 283 ylr~~~~~~~v~~l~Kyl~~KL~l~~e~evei~c~g~~~~~~~~l~~i~~ 332 (368)
|++| .-..++.-|++..+.+.|++. .++-+++.|+.|.+..|..++-.
T Consensus 34 ~FKI-KrtTpL~KLM~AYcERqGLs~-~siRFLFDGqRI~dddTPadL~M 81 (227)
T 3v7o_A 34 FFKI-KKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDLDM 81 (227)
T ss_dssp --------------------------------------------------
T ss_pred EEEE-ccCChHHHHHHHHHHHhCCCc-cceEEEECCEecCCCCCHHHcCC
Confidence 6777 667889999999999999976 69999999999999988877644
No 229
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=22.23 E-value=66 Score=26.93 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=28.4
Q ss_pred ccccCcccccccccceecCCCCCcccHHHHHHHh---------hccCCCcccCCCc
Q 017653 17 ACMTCPLCSKLFRDATTISECLHSFCRKCIYEKI---------TEEEIDSCPVCNT 63 (368)
Q Consensus 17 e~L~CpIC~~l~~dPv~l~~CgHtFC~~CI~~~l---------~~~~~~~CP~Cr~ 63 (368)
.+..|.+|.+--.-..- -.|-..||..||...+ ...+...|+.|.-
T Consensus 56 ~~~~C~vC~dGG~LlcC-d~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICC-DFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEEC-SSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEec-CCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34557777642211111 2588899999998642 1235689999963
No 230
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.74 E-value=27 Score=31.57 Aligned_cols=33 Identities=27% Similarity=0.563 Sum_probs=22.5
Q ss_pred ccccccCcccccccc----cceecCCCCCcccHHHHHH
Q 017653 15 LVACMTCPLCSKLFR----DATTISECLHSFCRKCIYE 48 (368)
Q Consensus 15 l~e~L~CpIC~~l~~----dPv~l~~CgHtFC~~CI~~ 48 (368)
+.+.-.|.+|..-|. .=.-. .||+.||..|-..
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR-~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCR-ACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECT-TTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccC-CCcCEeChhhcCC
Confidence 334568999987664 22233 6999999999653
No 231
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=26 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.466 Sum_probs=22.7
Q ss_pred ccccCcccccccc--cceecCCCCCcccHHHHHHHhh
Q 017653 17 ACMTCPLCSKLFR--DATTISECLHSFCRKCIYEKIT 51 (368)
Q Consensus 17 e~L~CpIC~~l~~--dPv~l~~CgHtFC~~CI~~~l~ 51 (368)
+.|.|..|...|. ..... .=+..||..|......
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAART 65 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHTSS
T ss_pred CcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHhhc
Confidence 5788888888776 23333 3456788888765543
No 232
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.93 E-value=13 Score=35.64 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=31.8
Q ss_pred cccccCcccccccccceecC---CCC--CcccHHHHHHHhhccCCCcccCCCcc
Q 017653 16 VACMTCPLCSKLFRDATTIS---ECL--HSFCRKCIYEKITEEEIDSCPVCNTD 64 (368)
Q Consensus 16 ~e~L~CpIC~~l~~dPv~l~---~Cg--HtFC~~CI~~~l~~~~~~~CP~Cr~~ 64 (368)
...-.||+|...-.-.++.. .=| +-+|..|-..|.- .-..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC
Confidence 45679999998776555431 133 4668888777663 35679999853
No 233
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.57 E-value=72 Score=27.50 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=32.3
Q ss_pred ccccCccccccccc-ceecCCCCCcccHHHHHHHhhccCCCcccCCCccc
Q 017653 17 ACMTCPLCSKLFRD-ATTISECLHSFCRKCIYEKITEEEIDSCPVCNTDL 65 (368)
Q Consensus 17 e~L~CpIC~~l~~d-Pv~l~~CgHtFC~~CI~~~l~~~~~~~CP~Cr~~l 65 (368)
+.|.|..|...|.. .... .=+..||..|..+.+. ..|..|....
T Consensus 141 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~f~----~kc~~C~~~~ 185 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLAD-KDGEIYCKGCYAKNFG----PKGFGFGQGA 185 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEE-ETTEEEEHHHHHHHTC----CCCCCCCCCC
T ss_pred hcCCccccCCCCCCCcccc-cCCEEeCHHHHHHhcC----CcCCCCCCcc
Confidence 67899999888854 3333 5678999999987773 3588888653
No 234
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.22 E-value=83 Score=31.07 Aligned_cols=28 Identities=18% Similarity=0.567 Sum_probs=21.3
Q ss_pred CCCCcccHHHHHHHhhc--------cCCCcccCCCc
Q 017653 36 ECLHSFCRKCIYEKITE--------EEIDSCPVCNT 63 (368)
Q Consensus 36 ~CgHtFC~~CI~~~l~~--------~~~~~CP~Cr~ 63 (368)
.|...||..||...+.. .....|-+|.-
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 57789999999887732 23578999974
Done!