BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017655
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9QXX8|NUFP1_MOUSE Nuclear fragile X mental retardation-interacting protein 1 OS=Mus
           musculus GN=Nufip1 PE=1 SV=1
          Length = 484

 Score = 38.5 bits (88), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 75  KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKK 125
           K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI +K
Sbjct: 202 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERK 247


>sp|Q9UHK0|NUFP1_HUMAN Nuclear fragile X mental retardation-interacting protein 1 OS=Homo
           sapiens GN=NUFIP1 PE=1 SV=2
          Length = 495

 Score = 37.4 bits (85), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 75  KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANI 122
           K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI
Sbjct: 211 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANI 253


>sp|Q641W3|NUFP1_RAT Nuclear fragile X mental retardation-interacting protein 1
           OS=Rattus norvegicus GN=Nufip1 PE=2 SV=1
          Length = 486

 Score = 37.0 bits (84), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 75  KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKK 125
           K ++F   N M+ P  KK K      T +++ +W EERRKNYPT ANI +K
Sbjct: 204 KIVQFHWRN-MHAPGMKKIK----LDTPEDIARWREERRKNYPTLANIERK 249


>sp|O42927|YBD3_SCHPO Uncharacterized protein C16C6.03c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPBC16C6.03c PE=4 SV=4
          Length = 207

 Score = 35.4 bits (80), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 27/34 (79%), Gaps = 1/34 (2%)

Query: 92  KRKSLALTYTEQEVKQWCEERRKNYPTKANINKK 125
           KR+++++  T +E++ W +ER+KN+PT++NI  K
Sbjct: 93  KRRNISIN-TPEEIEAWIQERKKNWPTESNIRSK 125


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.130    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,828,214
Number of Sequences: 539616
Number of extensions: 6987071
Number of successful extensions: 35487
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 419
Number of HSP's that attempted gapping in prelim test: 32257
Number of HSP's gapped (non-prelim): 2376
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)