Query 017655
Match_columns 368
No_of_seqs 94 out of 96
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqe_A KIAA1064 protein; CCCH 67.6 2.7 9.4E-05 33.9 2.3 14 229-242 65-78 (98)
2 2d9n_A Cleavage and polyadenyl 67.3 2.3 7.9E-05 32.6 1.8 27 184-212 7-33 (77)
3 2rhk_C Cleavage and polyadenyl 60.0 3 0.0001 31.9 1.1 27 184-212 13-39 (72)
4 2cqe_A KIAA1064 protein; CCCH 60.0 4.2 0.00015 32.7 2.1 24 186-211 12-35 (98)
5 1m9o_A Tristetraproline; Cys3H 57.6 6.2 0.00021 29.3 2.5 27 184-212 9-36 (77)
6 2b3g_B Cellular tumor antigen 57.6 4.2 0.00014 26.8 1.4 14 98-111 11-24 (28)
7 2d9m_A Zinc finger CCCH-type d 52.4 5.9 0.0002 31.0 1.7 24 186-211 19-42 (69)
8 3lvh_D LCB, clathrin light cha 48.4 28 0.00095 32.3 5.7 31 96-126 93-123 (205)
9 3hym_A Anaphase-promoting comp 47.3 6.1 0.00021 26.5 0.9 23 92-114 3-25 (29)
10 3lvg_D LCB, clathrin light cha 44.3 36 0.0012 31.1 5.7 24 97-120 79-102 (190)
11 2xpi_B Anaphase-promoting comp 30.1 13 0.00044 30.0 0.4 22 92-113 4-25 (81)
12 1j9i_A GPNU1 DBD;, terminase s 25.9 16 0.00056 26.4 0.3 18 97-114 38-55 (68)
13 2oxo_A Integrase; DNA-binding 20.4 1.1E+02 0.0037 21.2 3.8 34 239-272 65-98 (103)
14 1z4h_A TORI, TOR inhibition pr 20.3 39 0.0013 24.4 1.4 16 99-114 47-62 (66)
15 2bze_A KIAA0252 protein; human 20.1 1E+02 0.0035 26.5 4.2 29 100-128 116-147 (153)
16 3d2n_A Muscleblind-like protei 20.1 39 0.0013 26.5 1.5 25 188-213 10-34 (83)
No 1
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=67.63 E-value=2.7 Score=33.85 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=8.2
Q ss_pred chhHHHHHHHHHHH
Q 017655 229 KPTLLQKLLSADVK 242 (368)
Q Consensus 229 rpTLLqkLL~~DIr 242 (368)
.+.+|.++|..|..
T Consensus 65 ~~~~l~~~l~~~~~ 78 (98)
T 2cqe_A 65 TRELLDKMLADDAE 78 (98)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhHHhhhcchhhh
Confidence 45666676665543
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.31 E-value=2.3 Score=32.56 Aligned_cols=27 Identities=7% Similarity=-0.223 Sum_probs=19.9
Q ss_pred CCCCCCcceeccCCCccccCCCCCcchhh
Q 017655 184 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQ 212 (368)
Q Consensus 184 k~~sk~CKF~nrg~~RgRcgrKcrf~h~~ 212 (368)
...+..|+||.+|.|+ .|..|+|+|+.
T Consensus 7 ~~k~~~C~~fl~G~C~--~G~~C~fsH~~ 33 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCK--KGDQCEFLHEY 33 (77)
T ss_dssp CCTTSBCHHHHTTCCS--CTTSSSSBCSC
T ss_pred CCcceeCHhHccCcCC--CCCCCCCcccc
Confidence 3456789999887764 56678888875
No 3
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=60.01 E-value=3 Score=31.88 Aligned_cols=27 Identities=7% Similarity=-0.223 Sum_probs=21.0
Q ss_pred CCCCCCcceeccCCCccccCCCCCcchhh
Q 017655 184 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQ 212 (368)
Q Consensus 184 k~~sk~CKF~nrg~~RgRcgrKcrf~h~~ 212 (368)
...+..|+||.+|.|+ .|..|+|+|..
T Consensus 13 ~~k~~vCk~fl~G~C~--~G~~C~fsH~~ 39 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCK--KGDQCEFLHEY 39 (72)
T ss_dssp CCCCSBCHHHHTTCCC--CGGGSSSBCSC
T ss_pred CCcCeeCHHHhcCCCC--CCCCCCCcccc
Confidence 3467789999998864 56679999975
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=59.97 E-value=4.2 Score=32.73 Aligned_cols=24 Identities=4% Similarity=-0.162 Sum_probs=16.8
Q ss_pred CCCCcceeccCCCccccCCCCCcchh
Q 017655 186 LNKRGRFQNNYDKRGRYKRKDQFSKE 211 (368)
Q Consensus 186 ~sk~CKF~nrg~~RgRcgrKcrf~h~ 211 (368)
.+..|+||.+|.|+ .|.+|+|+|.
T Consensus 12 k~~lC~~f~~G~C~--~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCA--RAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCS--CSTTCSSBSS
T ss_pred CCccCcccccCcCC--CCCCCCCCCC
Confidence 56678888766654 5667777776
No 5
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=57.61 E-value=6.2 Score=29.34 Aligned_cols=27 Identities=22% Similarity=0.075 Sum_probs=21.0
Q ss_pred CCCCCCcceec-cCCCccccCCCCCcchhh
Q 017655 184 MPLNKRGRFQN-NYDKRGRYKRKDQFSKEQ 212 (368)
Q Consensus 184 k~~sk~CKF~n-rg~~RgRcgrKcrf~h~~ 212 (368)
+-.+..|+||. +|.|+ +|..|+|+|..
T Consensus 9 ~~kt~~C~~f~~~G~C~--~G~~C~f~H~~ 36 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCR--YGAKCQFAHGL 36 (77)
T ss_dssp CCCSCCCSGGGGTSCCT--TTTTCSSCSSS
T ss_pred CccchhCHHhhhCCCcC--CCCCccCCCCC
Confidence 45678999885 67764 78899999974
No 6
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=57.59 E-value=4.2 Score=26.78 Aligned_cols=14 Identities=29% Similarity=0.760 Sum_probs=12.4
Q ss_pred cccCHHHHHHHHHH
Q 017655 98 LTYTEQEVKQWCEE 111 (368)
Q Consensus 98 l~~t~eEI~aWraE 111 (368)
|+.+|.||+||.-+
T Consensus 11 lmlspddi~qw~s~ 24 (28)
T 2b3g_B 11 LMLSPDDIEQWFTE 24 (28)
T ss_dssp GGCCHHHHHHHHHC
T ss_pred hhcChHHHHHHhhc
Confidence 88999999999854
No 7
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.38 E-value=5.9 Score=30.96 Aligned_cols=24 Identities=8% Similarity=-0.218 Sum_probs=20.4
Q ss_pred CCCCcceeccCCCccccCCCCCcchh
Q 017655 186 LNKRGRFQNNYDKRGRYKRKDQFSKE 211 (368)
Q Consensus 186 ~sk~CKF~nrg~~RgRcgrKcrf~h~ 211 (368)
..+-|+.|.+|.|. +|.+|.|+|-
T Consensus 19 k~~LC~~~~~G~C~--~G~~C~FAHG 42 (69)
T 2d9m_A 19 YFSICDRYMNGTCP--EGNSCKFAHG 42 (69)
T ss_dssp CCSBCHHHHHSCCS--SCSSCSSBSS
T ss_pred CcccCcccCcCCCC--CCCccCCcCC
Confidence 45889999888875 9999999995
No 8
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=48.45 E-value=28 Score=32.26 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=22.8
Q ss_pred cccccCHHHHHHHHHHHHhcCCChHHHHHHH
Q 017655 96 LALTYTEQEVKQWCEERRKNYPTKANINKKL 126 (368)
Q Consensus 96 ~~l~~t~eEI~aWraERKKNyPT~aNVekK~ 126 (368)
.+|...|+-|+.||++|++.-=-+....+++
T Consensus 93 d~leeEPEsIRkWREEq~kRLeekDa~sekk 123 (205)
T 3lvh_D 93 DRLTQEPESIRKWREEQRKRLQELDAASKVM 123 (205)
T ss_dssp STTTBSTTHHHHHHHHHTTTSTHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999998765444444333
No 9
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=47.28 E-value=6.1 Score=26.49 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred cccccccccCHHHHHHHHHHHHh
Q 017655 92 KRKSLALTYTEQEVKQWCEERRK 114 (368)
Q Consensus 92 ~rk~~~l~~t~eEI~aWraERKK 114 (368)
+|+|-.|..+.+||++|-+.|+.
T Consensus 3 RRkPT~I~l~~eDi~e~E~~rke 25 (29)
T 3hym_A 3 RRKPTRLELKLDDIEEFENIRKD 25 (29)
T ss_dssp CCCCCCCCCCSGGGHHHHHHHHH
T ss_pred CCCCcEEEecHHHHHHHHHHHHH
Confidence 57888999999999999988874
No 10
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=44.27 E-value=36 Score=31.08 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=19.6
Q ss_pred ccccCHHHHHHHHHHHHhcCCChH
Q 017655 97 ALTYTEQEVKQWCEERRKNYPTKA 120 (368)
Q Consensus 97 ~l~~t~eEI~aWraERKKNyPT~a 120 (368)
.|...|+-|+.||||+++..=-+.
T Consensus 79 ~LeEEPEsIRKWREEQkkRLEeRD 102 (190)
T 3lvg_D 79 RLTQEPESIRKWREEQRKRLQELD 102 (190)
T ss_dssp TTTTSTTHHHHHHHHHTTTSTHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHHH
Confidence 478899999999999998764443
No 11
>2xpi_B Anaphase-promoting complex subunit HCN1 HCN1/CDC2 cyclosome/APC complex protein HCN1,...; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=30.07 E-value=13 Score=30.02 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.7
Q ss_pred cccccccccCHHHHHHHHHHHH
Q 017655 92 KRKSLALTYTEQEVKQWCEERR 113 (368)
Q Consensus 92 ~rk~~~l~~t~eEI~aWraERK 113 (368)
+|+|-.|..|++||.+|-++|-
T Consensus 4 RR~PTaI~iT~EDI~ayEd~rl 25 (81)
T 2xpi_B 4 RRNPTAIQITAEDVLAYDEEKL 25 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHCCC-
T ss_pred ccCCceEEeCHHHHHHHHHHHH
Confidence 6888999999999999987653
No 12
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=25.88 E-value=16 Score=26.42 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=15.6
Q ss_pred ccccCHHHHHHHHHHHHh
Q 017655 97 ALTYTEQEVKQWCEERRK 114 (368)
Q Consensus 97 ~l~~t~eEI~aWraERKK 114 (368)
.+.|..+||.+|+++|..
T Consensus 38 ~~~y~~~dv~~wl~~~~~ 55 (68)
T 1j9i_A 38 EVLYDSAAVIKWYAERDA 55 (68)
T ss_dssp CCEEEHHHHHHHHTTTGG
T ss_pred eEEECHHHHHHHHHHCcc
Confidence 378999999999998864
No 13
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=20.37 E-value=1.1e+02 Score=21.19 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=22.7
Q ss_pred HHHHHHhHHHHHHHHHHHHcCcCCCCCCCCcccC
Q 017655 239 ADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFP 272 (368)
Q Consensus 239 ~DIr~E~n~LLQciRflv~NnFF~~~~~kp~~~P 272 (368)
.-+.+....|-++|+|.+..++...-|...+..|
T Consensus 65 ~t~~~~~~~l~~~~~~a~~~~~i~~nP~~~v~~~ 98 (103)
T 2oxo_A 65 ASAKLIRSTLSDAFREAIAEGHITTNHVAATRAA 98 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSCTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCChHhhcCCC
Confidence 3466677889999999999999876555444444
No 14
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=20.35 E-value=39 Score=24.43 Aligned_cols=16 Identities=0% Similarity=-0.006 Sum_probs=13.8
Q ss_pred ccCHHHHHHHHHHHHh
Q 017655 99 TYTEQEVKQWCEERRK 114 (368)
Q Consensus 99 ~~t~eEI~aWraERKK 114 (368)
.+...||.+|+++|..
T Consensus 47 ~w~~~ev~~Wl~~~~~ 62 (66)
T 1z4h_A 47 RWLYRDHCEFKNKLLS 62 (66)
T ss_dssp EEEHHHHHHHHHHHHH
T ss_pred EEeHHHHHHHHHHHHH
Confidence 3789999999999865
No 15
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=20.14 E-value=1e+02 Score=26.47 Aligned_cols=29 Identities=38% Similarity=0.518 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHHHHh---cCCChHHHHHHHHh
Q 017655 100 YTEQEVKQWCEERRK---NYPTKANINKKLTE 128 (368)
Q Consensus 100 ~t~eEI~aWraERKK---NyPT~aNVekK~ae 128 (368)
.|++|..+|++.=++ .+||..-|++|..+
T Consensus 116 fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~ 147 (153)
T 2bze_A 116 FTESEFMKWKEAMFSAGMQLPTLDEINKKELS 147 (153)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 579999999998877 69999999999875
No 16
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=20.10 E-value=39 Score=26.50 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=17.0
Q ss_pred CCcceeccCCCccccCCCCCcchhhh
Q 017655 188 KRGRFQNNYDKRGRYKRKDQFSKEQK 213 (368)
Q Consensus 188 k~CKF~nrg~~RgRcgrKcrf~h~~~ 213 (368)
..|++|.+|.|. |-+..|+|+|.+.
T Consensus 10 ~VCr~FlrG~C~-r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 10 EVCREFQRGTCS-RPDTECKFAHPSK 34 (83)
T ss_dssp EBCTTGGGTCCC-SCTTTCSSBCCCT
T ss_pred hhcHHHhcCCCC-CCCCCCCCcCCCc
Confidence 469999887653 2223689999864
Done!