Query 017657
Match_columns 368
No_of_seqs 329 out of 1727
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 99.9 3.2E-25 1.1E-29 187.0 7.9 120 112-244 2-123 (126)
2 2jtn_A LIM domain-binding prot 99.9 1E-24 3.4E-29 195.6 10.2 124 110-245 57-180 (182)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 5E-25 1.7E-29 186.9 6.7 121 113-245 2-126 (131)
4 2rgt_A Fusion of LIM/homeobox 99.9 6E-25 2E-29 194.8 7.3 126 111-248 4-129 (169)
5 1b8t_A Protein (CRP1); LIM dom 99.9 6.6E-24 2.3E-28 191.8 6.6 131 111-257 5-183 (192)
6 1rut_X Flinc4, fusion protein 99.9 3.2E-24 1.1E-28 193.4 4.3 124 112-247 4-131 (188)
7 2cup_A Skeletal muscle LIM-pro 99.8 1.4E-21 4.6E-26 158.4 7.3 98 111-219 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.8 1.9E-19 6.6E-24 151.1 3.4 108 111-246 3-114 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 8.3E-18 2.8E-22 139.5 6.2 102 112-245 2-105 (114)
10 1iml_A CRIP, cysteine rich int 99.6 2.1E-16 7E-21 121.4 4.3 71 114-184 1-72 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.6 1.6E-16 5.5E-21 123.5 2.9 74 110-183 4-77 (81)
12 2dar_A PDZ and LIM domain prot 99.6 9.7E-16 3.3E-20 121.6 6.6 69 109-178 21-89 (90)
13 2cu8_A Cysteine-rich protein 2 99.6 7.6E-16 2.6E-20 118.2 5.0 70 109-178 5-75 (76)
14 1x68_A FHL5 protein; four-and- 99.6 1.3E-15 4.3E-20 117.1 5.2 69 112-180 4-75 (76)
15 2cur_A Skeletal muscle LIM-pro 99.6 1.1E-15 3.9E-20 115.0 4.3 67 111-178 3-69 (69)
16 2dj7_A Actin-binding LIM prote 99.6 1.4E-15 4.7E-20 118.4 4.7 67 111-178 13-79 (80)
17 2d8z_A Four and A half LIM dom 99.6 1.7E-15 5.9E-20 114.2 4.5 67 111-178 3-69 (70)
18 2ehe_A Four and A half LIM dom 99.5 5E-15 1.7E-19 115.2 6.2 72 107-178 9-81 (82)
19 1wyh_A SLIM 2, skeletal muscle 99.5 2.9E-15 9.9E-20 113.5 4.0 67 112-178 4-71 (72)
20 1x4k_A Skeletal muscle LIM-pro 99.5 3.7E-15 1.3E-19 112.9 4.5 67 112-178 4-71 (72)
21 2d8y_A Eplin protein; LIM doma 99.5 7E-15 2.4E-19 116.8 6.3 73 111-183 13-85 (91)
22 1x3h_A Leupaxin; paxillin fami 99.5 5.8E-15 2E-19 114.2 5.3 71 107-178 9-79 (80)
23 1x4l_A Skeletal muscle LIM-pro 99.5 5.5E-15 1.9E-19 112.1 4.9 66 111-176 3-71 (72)
24 2cuq_A Four and A half LIM dom 99.5 7.7E-15 2.6E-19 113.5 5.5 71 107-178 9-79 (80)
25 1nyp_A Pinch protein; LIM doma 99.5 3.5E-15 1.2E-19 111.3 3.0 63 112-175 4-66 (66)
26 2dlo_A Thyroid receptor-intera 99.5 9.1E-15 3.1E-19 113.5 5.4 67 111-178 13-80 (81)
27 1x64_A Alpha-actinin-2 associa 99.5 1.6E-14 5.6E-19 114.2 6.9 66 111-177 23-88 (89)
28 1g47_A Pinch protein; LIM doma 99.5 7.3E-15 2.5E-19 112.7 4.1 67 111-177 9-76 (77)
29 1x62_A C-terminal LIM domain p 99.5 6.7E-15 2.3E-19 113.9 3.6 66 111-177 13-78 (79)
30 2d8x_A Protein pinch; LIM doma 99.5 1.2E-14 4.1E-19 109.6 4.1 66 111-177 3-68 (70)
31 1x63_A Skeletal muscle LIM-pro 99.5 2.9E-14 9.8E-19 110.8 4.9 71 107-177 9-80 (82)
32 2co8_A NEDD9 interacting prote 99.5 5.3E-14 1.8E-18 109.7 6.3 67 110-176 12-80 (82)
33 2ehe_A Four and A half LIM dom 99.5 3.7E-14 1.3E-18 110.3 4.7 80 159-253 1-80 (82)
34 2cor_A Pinch protein; LIM doma 99.5 3.4E-14 1.2E-18 110.1 4.1 65 111-177 13-77 (79)
35 2cuq_A Four and A half LIM dom 99.4 7.5E-14 2.6E-18 107.9 5.7 78 159-253 1-78 (80)
36 1wig_A KIAA1808 protein; LIM d 99.4 4.2E-14 1.4E-18 107.9 4.2 63 111-174 3-66 (73)
37 1x61_A Thyroid receptor intera 99.4 4.9E-14 1.7E-18 106.8 4.3 67 111-178 3-70 (72)
38 1x6a_A LIMK-2, LIM domain kina 99.4 8.3E-14 2.9E-18 108.0 5.4 75 159-246 1-75 (81)
39 1x3h_A Leupaxin; paxillin fami 99.4 1E-13 3.5E-18 107.1 5.5 79 159-254 1-79 (80)
40 2dlo_A Thyroid receptor-intera 99.4 1.3E-13 4.3E-18 107.0 5.9 79 159-254 2-80 (81)
41 1b8t_A Protein (CRP1); LIM dom 99.4 1.1E-13 3.8E-18 124.6 6.0 73 112-184 114-186 (192)
42 2egq_A FHL1 protein; LIM domai 99.4 9.4E-14 3.2E-18 106.5 4.4 74 159-244 1-76 (77)
43 1x6a_A LIMK-2, LIM domain kina 99.4 1.2E-13 4.1E-18 107.1 4.0 71 107-178 9-81 (81)
44 2l3k_A Rhombotin-2, linker, LI 99.4 2E-13 6.9E-18 114.4 5.6 72 115-186 10-83 (123)
45 3f6q_B LIM and senescent cell 99.4 1.9E-13 6.6E-18 103.0 4.0 63 111-173 9-72 (72)
46 2egq_A FHL1 protein; LIM domai 99.4 3.2E-13 1.1E-17 103.6 4.5 64 107-170 9-76 (77)
47 1x63_A Skeletal muscle LIM-pro 99.4 4.6E-13 1.6E-17 103.9 5.4 80 159-253 1-80 (82)
48 2l4z_A DNA endonuclease RBBP8, 99.4 3.2E-13 1.1E-17 113.5 4.7 63 111-173 59-123 (123)
49 2iyb_E Testin, TESS, TES; LIM 99.3 3.1E-13 1.1E-17 100.6 3.2 59 113-171 2-64 (65)
50 1v6g_A Actin binding LIM prote 99.3 3.3E-12 1.1E-16 99.0 5.6 73 160-246 2-74 (81)
51 2xqn_T Testin, TESS; metal-bin 99.2 1.1E-12 3.9E-17 109.8 0.8 111 171-312 1-122 (126)
52 2jtn_A LIM domain-binding prot 99.2 9E-12 3.1E-16 111.1 5.6 122 159-312 43-178 (182)
53 1v6g_A Actin binding LIM prote 99.2 8.5E-12 2.9E-16 96.6 3.8 65 107-172 9-74 (81)
54 1m3v_A FLIN4, fusion of the LI 99.1 1.4E-11 4.8E-16 103.0 1.6 109 171-313 3-112 (122)
55 2cup_A Skeletal muscle LIM-pro 99.0 5.5E-11 1.9E-15 95.6 2.8 91 171-291 3-93 (101)
56 1x68_A FHL5 protein; four-and- 99.0 1.7E-10 5.8E-15 88.2 4.4 72 170-255 2-74 (76)
57 1rut_X Flinc4, fusion protein 99.0 1.6E-10 5.5E-15 103.5 3.9 67 115-181 71-139 (188)
58 2xjy_A Rhombotin-2; oncoprotei 99.0 1.2E-10 4.2E-15 97.9 2.5 61 115-175 68-130 (131)
59 2dar_A PDZ and LIM domain prot 99.0 5.9E-10 2E-14 88.0 6.0 76 161-253 13-88 (90)
60 1wig_A KIAA1808 protein; LIM d 99.0 3.8E-10 1.3E-14 85.8 4.3 63 170-246 2-64 (73)
61 2cur_A Skeletal muscle LIM-pro 98.9 7.4E-10 2.5E-14 82.9 4.9 66 171-253 3-68 (69)
62 1x4k_A Skeletal muscle LIM-pro 98.9 7.6E-10 2.6E-14 83.3 4.9 69 170-253 2-70 (72)
63 2d8z_A Four and A half LIM dom 98.9 7.5E-10 2.6E-14 83.0 4.3 67 170-253 2-68 (70)
64 1wyh_A SLIM 2, skeletal muscle 98.9 9.8E-10 3.4E-14 82.7 4.2 69 170-253 2-70 (72)
65 2rgt_A Fusion of LIM/homeobox 98.9 2.8E-10 9.6E-15 100.2 1.0 110 173-314 6-126 (169)
66 1x4l_A Skeletal muscle LIM-pro 98.9 1.8E-09 6.1E-14 81.4 5.2 68 171-252 3-71 (72)
67 2cu8_A Cysteine-rich protein 2 98.8 2.8E-09 9.4E-14 81.3 5.5 69 170-254 6-75 (76)
68 1j2o_A FLIN2, fusion of rhombo 98.8 1.9E-09 6.5E-14 88.9 4.7 100 173-312 3-103 (114)
69 1iml_A CRIP, cysteine rich int 98.8 2.3E-09 7.9E-14 81.7 4.6 68 174-257 1-69 (76)
70 1x61_A Thyroid receptor intera 98.8 2.8E-09 9.6E-14 80.2 5.0 64 171-247 3-66 (72)
71 2l3k_A Rhombotin-2, linker, LI 98.8 1.1E-09 3.7E-14 91.6 2.9 75 168-256 1-77 (123)
72 2iyb_E Testin, TESS, TES; LIM 98.8 2.5E-09 8.5E-14 79.3 3.7 61 172-245 1-64 (65)
73 1nyp_A Pinch protein; LIM doma 98.8 2.1E-09 7E-14 79.7 3.1 61 170-245 2-62 (66)
74 1a7i_A QCRP2 (LIM1); LIM domai 98.8 2.2E-09 7.4E-14 82.9 3.2 69 172-256 6-74 (81)
75 3f6q_B LIM and senescent cell 98.8 3E-09 1E-13 79.7 3.7 65 168-245 6-70 (72)
76 1g47_A Pinch protein; LIM doma 98.8 3.6E-09 1.2E-13 80.6 4.1 68 171-253 9-76 (77)
77 2d8x_A Protein pinch; LIM doma 98.7 8.9E-09 3.1E-13 77.1 4.8 60 172-246 4-63 (70)
78 2dj7_A Actin-binding LIM prote 98.7 1E-08 3.6E-13 79.2 5.2 64 173-253 15-78 (80)
79 2l4z_A DNA endonuclease RBBP8, 98.7 1E-08 3.5E-13 85.9 4.2 63 170-245 58-121 (123)
80 2d8y_A Eplin protein; LIM doma 98.7 1.4E-08 4.6E-13 80.2 4.6 69 171-255 13-81 (91)
81 2cor_A Pinch protein; LIM doma 98.7 1.6E-08 5.4E-13 77.9 4.8 64 171-252 13-76 (79)
82 1x64_A Alpha-actinin-2 associa 98.6 1.8E-08 6.2E-13 79.2 4.4 64 172-252 24-87 (89)
83 2co8_A NEDD9 interacting prote 98.6 3.6E-08 1.2E-12 76.4 4.8 61 173-246 15-76 (82)
84 1x62_A C-terminal LIM domain p 98.6 1E-08 3.5E-13 78.8 1.5 59 173-246 15-73 (79)
85 1zfo_A LAsp-1; LIM domain, zin 97.5 2.7E-05 9.2E-10 49.2 1.1 29 113-141 3-31 (31)
86 1q0v_A Hydrophilic protein; ha 93.4 0.06 2.1E-06 41.1 3.5 46 42-87 9-66 (81)
87 2d3g_P Ubiquitin interacting m 82.7 0.63 2.1E-05 27.5 1.7 23 43-65 2-24 (26)
88 4ap4_A E3 ubiquitin ligase RNF 81.6 0.35 1.2E-05 39.0 0.5 88 157-259 30-123 (133)
89 2klz_A Ataxin-3; UIM, ubiquiti 80.5 0.65 2.2E-05 31.8 1.5 39 42-91 4-42 (52)
90 1zfo_A LAsp-1; LIM domain, zin 78.8 0.39 1.3E-05 29.7 -0.1 29 173-213 3-31 (31)
91 1jm7_B BARD1, BRCA1-associated 67.7 4.5 0.00015 32.2 3.7 44 141-184 23-66 (117)
92 3a1q_C Ubiquitin interaction m 66.1 2.3 7.7E-05 28.0 1.2 40 43-88 5-44 (45)
93 2rr9_C Putative uncharacterize 65.3 2.7 9.2E-05 27.8 1.5 42 44-91 3-44 (46)
94 2djb_A Polycomb group ring fin 64.4 3.6 0.00012 29.6 2.3 46 141-186 16-63 (72)
95 1bor_A Transcription factor PM 62.3 8.1 0.00028 26.4 3.7 44 141-186 7-50 (56)
96 2ect_A Ring finger protein 126 61.8 5.8 0.0002 28.8 3.1 47 213-259 16-62 (78)
97 2ysl_A Tripartite motif-contai 60.4 4.3 0.00015 29.0 2.1 28 158-185 37-69 (73)
98 2w15_A Zinc metalloproteinase 58.4 4.6 0.00016 35.4 2.3 24 344-367 123-146 (202)
99 3cqb_A Probable protease HTPX 58.1 2.2 7.6E-05 33.8 0.2 15 353-367 79-93 (107)
100 1iym_A EL5; ring-H2 finger, ub 57.4 11 0.00038 25.1 3.7 46 213-258 6-52 (55)
101 1atl_A Atrolysin C; metalloend 57.4 4.9 0.00017 35.2 2.3 24 344-367 123-146 (202)
102 1t1h_A Gspef-atpub14, armadill 57.0 6.7 0.00023 28.4 2.7 46 139-185 7-55 (78)
103 1qua_A Acutolysin-C, hemorrhag 55.8 5.4 0.00019 34.8 2.3 24 344-367 122-145 (197)
104 2ecy_A TNF receptor-associated 55.6 3.9 0.00013 28.8 1.1 44 141-185 16-62 (66)
105 4dd8_A Disintegrin and metallo 55.2 5.2 0.00018 35.3 2.1 23 345-367 121-143 (208)
106 1kuf_A Atrolysin E, metallopro 55.0 5.7 0.0002 34.9 2.3 24 344-367 125-148 (203)
107 1yp1_A FII; FII hydrolase; 1.9 54.6 5.8 0.0002 34.7 2.3 24 344-367 122-145 (202)
108 1bud_A Protein (acutolysin A); 53.5 6.3 0.00022 34.3 2.3 24 344-367 120-143 (197)
109 2ysm_A Myeloid/lymphoid or mix 51.8 22 0.00076 27.9 5.2 97 112-244 6-104 (111)
110 2y43_A E3 ubiquitin-protein li 50.1 6.2 0.00021 30.2 1.5 43 142-184 24-68 (99)
111 2yur_A Retinoblastoma-binding 49.8 9.9 0.00034 27.4 2.6 25 160-184 35-63 (74)
112 2ecv_A Tripartite motif-contai 49.5 9 0.00031 27.8 2.3 44 141-185 20-71 (85)
113 2ct0_A Non-SMC element 1 homol 49.4 8.1 0.00028 28.7 2.0 18 109-126 11-28 (74)
114 2i47_A ADAM 17; TACE-inhibitor 48.2 7.8 0.00027 35.9 2.2 18 350-367 179-198 (288)
115 3nw0_A Non-structural maintena 47.8 7.6 0.00026 35.3 2.0 16 111-126 178-193 (238)
116 3l11_A E3 ubiquitin-protein li 46.7 9.6 0.00033 29.9 2.2 29 141-170 16-44 (115)
117 2ecm_A Ring finger and CHY zin 46.2 12 0.00041 24.9 2.4 45 213-257 6-51 (55)
118 2kiz_A E3 ubiquitin-protein li 46.1 8.5 0.00029 27.1 1.6 46 213-258 15-60 (69)
119 3vk6_A E3 ubiquitin-protein li 46.0 7.8 0.00027 30.7 1.5 43 143-185 4-49 (101)
120 2jny_A Uncharacterized BCR; st 45.7 1.7 5.9E-05 31.9 -2.2 51 213-291 11-61 (67)
121 2lva_A Ubiquitin carboxyl-term 51.2 4.5 0.00015 33.2 0.0 20 42-61 93-112 (129)
122 2dw0_A Catrocollastatin; apopt 45.0 9.5 0.00033 37.5 2.3 24 344-367 124-147 (419)
123 2kwj_A Zinc finger protein DPF 44.8 28 0.00094 27.7 4.7 84 127-244 22-108 (114)
124 1jm7_A BRCA1, breast cancer ty 44.5 11 0.00037 29.2 2.2 13 159-171 39-51 (112)
125 1chc_A Equine herpes virus-1 r 44.1 14 0.00048 25.8 2.6 43 142-184 7-51 (68)
126 2ep4_A Ring finger protein 24; 43.7 8.9 0.0003 27.4 1.5 47 213-259 16-62 (74)
127 2ckl_A Polycomb group ring fin 43.7 9.1 0.00031 29.7 1.6 30 141-170 16-45 (108)
128 2ero_A VAP-1, vascular apoptos 43.4 10 0.00035 37.4 2.3 24 344-367 133-156 (427)
129 2e3x_A Coagulation factor X-ac 42.9 11 0.00036 37.3 2.3 25 344-368 126-150 (427)
130 2ecn_A Ring finger protein 141 42.4 8.3 0.00028 27.3 1.1 43 142-186 17-61 (70)
131 2ecw_A Tripartite motif-contai 42.3 9.8 0.00034 27.6 1.5 44 141-185 20-71 (85)
132 2egp_A Tripartite motif-contai 42.3 9.6 0.00033 27.5 1.5 12 159-170 30-41 (79)
133 1jjd_A Metallothionein, SMTA; 41.8 8 0.00027 27.2 0.9 29 142-170 9-38 (55)
134 2kre_A Ubiquitin conjugation f 41.5 13 0.00046 28.8 2.3 47 138-185 27-75 (100)
135 2csy_A Zinc finger protein 183 41.2 10 0.00036 27.7 1.5 42 142-184 17-60 (81)
136 2jrp_A Putative cytoplasmic pr 40.1 21 0.0007 27.1 3.0 10 114-123 3-12 (81)
137 3oue_A Cytochrome C family pro 39.8 4.5 0.00016 34.6 -0.8 89 162-256 56-156 (158)
138 2ckl_B Ubiquitin ligase protei 39.7 9.1 0.00031 32.2 1.1 43 141-183 55-100 (165)
139 1t1h_A Gspef-atpub14, armadill 39.6 13 0.00044 26.8 1.8 45 212-259 8-53 (78)
140 2kr4_A Ubiquitin conjugation f 39.4 14 0.0005 27.6 2.1 46 138-184 12-59 (85)
141 2ct2_A Tripartite motif protei 39.2 12 0.00041 27.5 1.6 27 159-185 37-68 (88)
142 2rjp_A Adamts-4; metalloprotea 38.7 11 0.00037 35.4 1.6 20 345-367 134-153 (316)
143 4ayc_A E3 ubiquitin-protein li 38.6 14 0.00049 30.1 2.1 9 115-123 55-63 (138)
144 2ct2_A Tripartite motif protei 38.6 13 0.00044 27.3 1.7 46 213-258 16-65 (88)
145 3lrq_A E3 ubiquitin-protein li 38.1 11 0.00038 28.9 1.3 45 141-185 23-70 (100)
146 1wgm_A Ubiquitin conjugation f 38.0 17 0.00057 28.2 2.3 46 138-184 20-68 (98)
147 2ddf_A ADAM 17; hydrolase; HET 37.2 10 0.00034 34.4 1.0 18 350-367 173-192 (257)
148 1x4j_A Ring finger protein 38; 37.1 10 0.00035 27.3 0.9 45 213-257 24-68 (75)
149 2l0b_A E3 ubiquitin-protein li 36.6 14 0.00048 27.8 1.6 45 213-257 41-85 (91)
150 1e4u_A Transcriptional repress 36.5 15 0.00053 27.1 1.8 28 159-186 33-63 (78)
151 3c37_A Peptidase, M48 family; 36.5 8 0.00027 35.2 0.2 23 345-367 83-110 (253)
152 1r55_A ADAM 33; metalloproteas 36.4 17 0.00057 32.1 2.4 23 345-367 124-146 (214)
153 2gvi_A Conserved hypothetical 36.3 6.2 0.00021 35.0 -0.5 13 158-170 190-202 (204)
154 3ztg_A E3 ubiquitin-protein li 35.5 9.6 0.00033 28.5 0.5 42 141-183 14-60 (92)
155 1q0v_A Hydrophilic protein; ha 35.3 32 0.0011 26.0 3.3 19 42-60 52-70 (81)
156 3b8z_A Protein adamts-5; alpha 34.8 13 0.00043 32.8 1.3 20 345-367 132-151 (217)
157 2ckl_A Polycomb group ring fin 34.8 20 0.00069 27.7 2.3 45 213-259 16-60 (108)
158 3fl2_A E3 ubiquitin-protein li 34.7 14 0.00049 29.4 1.5 27 159-185 70-99 (124)
159 2c2l_A CHIP, carboxy terminus 33.7 17 0.00058 32.7 2.0 47 138-185 206-255 (281)
160 2rjq_A Adamts-5; metalloprotea 33.7 15 0.0005 35.4 1.6 21 344-367 133-153 (378)
161 2y43_A E3 ubiquitin-protein li 33.5 18 0.00061 27.5 1.8 45 213-259 23-67 (99)
162 3k7n_A K-like; SVMP, hydrolase 33.3 19 0.00064 35.2 2.3 23 345-367 127-149 (397)
163 4ayc_A E3 ubiquitin-protein li 33.2 18 0.00061 29.5 1.8 44 213-259 54-97 (138)
164 4ic3_A E3 ubiquitin-protein li 33.0 25 0.00085 25.3 2.5 21 163-185 47-67 (74)
165 3k7l_A Atragin; SVMP, metallop 32.5 18 0.00062 35.6 2.1 23 345-367 132-154 (422)
166 1chc_A Equine herpes virus-1 r 32.3 42 0.0014 23.2 3.5 41 112-152 4-52 (68)
167 2d8t_A Dactylidin, ring finger 32.2 18 0.00061 25.6 1.5 45 213-260 16-60 (71)
168 2hf1_A Tetraacyldisaccharide-1 31.9 4.3 0.00015 29.8 -2.0 40 213-280 9-48 (68)
169 1g25_A CDK-activating kinase a 31.4 12 0.0004 26.1 0.4 46 141-186 4-56 (65)
170 2v4b_A Adamts-1; zymogen, prot 31.3 17 0.00058 33.7 1.6 20 345-367 134-153 (300)
171 2ecn_A Ring finger protein 141 31.2 20 0.00069 25.1 1.7 43 213-259 16-58 (70)
172 1z6u_A NP95-like ring finger p 30.7 18 0.00061 30.2 1.5 27 159-185 96-125 (150)
173 3knv_A TNF receptor-associated 30.0 11 0.00038 31.2 0.0 43 141-184 32-77 (141)
174 2djb_A Polycomb group ring fin 29.7 17 0.00058 25.8 1.0 45 213-259 16-60 (72)
175 2dmj_A Poly (ADP-ribose) polym 29.6 9.8 0.00034 30.2 -0.4 19 168-186 20-38 (106)
176 2jne_A Hypothetical protein YF 28.7 17 0.00059 28.5 0.9 10 114-123 33-42 (101)
177 3hcs_A TNF receptor-associated 28.4 19 0.00065 30.2 1.3 44 141-185 19-65 (170)
178 2jr6_A UPF0434 protein NMA0874 28.4 5 0.00017 29.4 -2.1 40 213-280 9-48 (68)
179 2ecg_A Baculoviral IAP repeat- 28.2 28 0.00095 25.1 2.0 21 163-185 48-68 (75)
180 1rmd_A RAG1; V(D)J recombinati 28.2 20 0.00067 28.1 1.2 44 141-185 24-70 (116)
181 4gne_A Histone-lysine N-methyl 28.0 1.4E+02 0.0048 23.5 6.2 51 112-183 14-68 (107)
182 3hct_A TNF receptor-associated 27.8 20 0.0007 28.2 1.3 44 141-185 19-65 (118)
183 2cs3_A Protein C14ORF4, MY039 26.4 24 0.00083 26.8 1.3 33 112-144 14-46 (93)
184 2ea6_A Ring finger protein 4; 26.3 14 0.00048 25.6 0.0 46 213-258 16-65 (69)
185 2ko5_A Ring finger protein Z; 26.1 35 0.0012 26.7 2.2 45 209-257 25-69 (99)
186 2ecl_A Ring-box protein 2; RNF 25.7 46 0.0016 24.3 2.9 12 112-123 14-25 (81)
187 3g5c_A ADAM 22; alpha/beta fol 25.7 27 0.00092 35.3 2.0 19 348-367 126-144 (510)
188 2f42_A STIP1 homology and U-bo 25.1 27 0.00093 30.3 1.6 47 138-185 104-153 (179)
189 2dmi_A Teashirt homolog 3; zin 25.1 27 0.00092 26.5 1.5 13 211-223 79-91 (115)
190 2js4_A UPF0434 protein BB2007; 24.3 21 0.00072 26.2 0.6 40 213-280 9-48 (70)
191 1v9x_A Poly (ADP-ribose) polym 23.8 12 0.00042 30.1 -0.8 19 168-186 15-33 (114)
192 2ckl_B Ubiquitin ligase protei 23.7 28 0.00095 29.1 1.4 45 213-259 55-100 (165)
193 3odc_A Poly [ADP-ribose] polym 23.4 19 0.00065 28.8 0.3 20 108-127 14-33 (111)
194 2ysj_A Tripartite motif-contai 23.0 24 0.00082 24.2 0.7 30 141-171 21-50 (63)
195 2kre_A Ubiquitin conjugation f 23.0 44 0.0015 25.7 2.4 44 210-256 27-70 (100)
196 2pk7_A Uncharacterized protein 22.2 22 0.00074 26.0 0.4 40 213-280 9-48 (69)
197 3dwb_A ECE-1, endothelin-conve 22.0 22 0.00074 37.1 0.4 13 356-368 500-512 (670)
198 2xeu_A Ring finger protein 4; 22.0 13 0.00046 25.3 -0.8 47 213-259 4-54 (64)
199 2yu4_A E3 SUMO-protein ligase 21.3 32 0.0011 26.1 1.2 32 139-171 6-38 (94)
200 2ecj_A Tripartite motif-contai 21.3 36 0.0012 22.6 1.3 11 160-170 34-44 (58)
201 2do3_A Transcription elongatio 21.2 25 0.00085 25.8 0.5 22 4-25 14-36 (69)
202 2gvi_A Conserved hypothetical 20.6 18 0.0006 32.0 -0.5 30 213-244 173-202 (204)
203 3od8_A Poly [ADP-ribose] polym 20.3 25 0.00084 28.5 0.3 20 108-127 33-52 (116)
204 2jsd_A Matrix metalloproteinas 20.3 23 0.00078 29.5 0.2 10 358-367 109-118 (160)
205 3ng2_A RNF4, snurf, ring finge 20.1 16 0.00053 25.7 -0.8 47 213-259 11-61 (71)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.91 E-value=3.2e-25 Score=187.01 Aligned_cols=120 Identities=20% Similarity=0.468 Sum_probs=107.3
Q ss_pred CCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccccCCCCcce
Q 017657 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLI 191 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i 191 (368)
..++|++|+++|..++++.++|+.||++||+|..|+++|.+..|+..+|++||+.||.++|+++|.+|+++|.+.+ .++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 4578999999997788999999999999999999999999989999999999999999999999999999999742 467
Q ss_pred EEccccccccccCCCCcc--CCCCccCCCCCcCCCCCceEEccCCcccccchhhh
Q 017657 192 EYRAHPFWVQKYCPSHEH--DGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (368)
Q Consensus 192 ~~~~~pfw~~~yC~~h~H--~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~ 244 (368)
++.++. || +.||+|..|++.|. +..|+ +.+|++||..++.+
T Consensus 81 ~a~~~~----------~H~~~~CF~C~~C~~~l~-~~~f~-~~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 81 TYNNFS----------WHASTECFLCSCCSKCLI-GQKFM-PVEGMVFCSVECKK 123 (126)
T ss_dssp EETTEE----------EESSTTTSBCTTTCCBCT-TSEEE-EETTEEESSHHHHH
T ss_pred ECCCCE----------eeCCCCCcCcCCCCCccC-CCeeE-eECCEEcchHHhhh
Confidence 887754 59 99999999999995 77776 46999999977765
No 2
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.91 E-value=1e-24 Score=195.60 Aligned_cols=124 Identities=25% Similarity=0.560 Sum_probs=108.6
Q ss_pred CCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccccCCCCc
Q 017657 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (368)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~ 189 (368)
....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 3567899999999976667899999999999999999999998776 6899999999999999999999999998742 3
Q ss_pred ceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhh
Q 017657 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (368)
Q Consensus 190 ~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~ 245 (368)
++.+.++ +||..||+|..|++.|..+..|+...+|++||..||.++
T Consensus 135 v~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 135 VRRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCEETTE----------ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EEecCCC----------CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 4556654 469999999999999977888877789999999999875
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.91 E-value=5e-25 Score=186.88 Aligned_cols=121 Identities=19% Similarity=0.455 Sum_probs=106.7
Q ss_pred CCccccCCcccccCceEeecCceecCCCcccCCCCCCCC--CceeeccCCcccccccccccccc--cccccCccccCCCC
Q 017657 113 YRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSNHG 188 (368)
Q Consensus 113 ~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~--~~~f~~~dg~~yC~~cy~~~f~p--~C~~C~~~I~~~~~ 188 (368)
.++|++|+++|..+.++.++++.||++||+|..|+++|. +..|+..+|++||+.||.++|++ +|..|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 478999999996555799999999999999999999996 36899999999999999999999 9999999998642
Q ss_pred cceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhh
Q 017657 189 GLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (368)
Q Consensus 189 ~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~ 245 (368)
.++.+.++. ||+.||+|..|++.|..+..|+. .+|++||..||.++
T Consensus 81 ~~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 81 MTMRVKDKV----------YHLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEW 126 (131)
T ss_dssp EEEEETTEE----------EEGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHH
T ss_pred eeEeeCCce----------ECccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHH
Confidence 467777654 59999999999999977888875 58999999999875
No 4
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.91 E-value=6e-25 Score=194.79 Aligned_cols=126 Identities=25% Similarity=0.543 Sum_probs=108.0
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccccCCCCcc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGL 190 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~ 190 (368)
.+.++|.+|+++|....++.++|+.||++||+|..|+++|.+..| ..||++||+.||.++|+++|.+|+++|.+.+ .+
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v 81 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VV 81 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EE
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EE
Confidence 356899999999976667899999999999999999999998775 7899999999999999999999999998742 24
Q ss_pred eEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccC
Q 017657 191 IEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD 248 (368)
Q Consensus 191 i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~ 248 (368)
+.+.++ +||..||+|..|++.|..++.|+...+|++||..||.++++.
T Consensus 82 ~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 82 RRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EEETTE----------EEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred EEcCCc----------eEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 456654 469999999999999977888876789999999999987654
No 5
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.89 E-value=6.6e-24 Score=191.79 Aligned_cols=131 Identities=21% Similarity=0.453 Sum_probs=114.0
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccc---------------
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPK--------------- 175 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~--------------- 175 (368)
.+.++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|+++
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 35689999999997788999999999999999999999999989999999999999999999886
Q ss_pred ---------------------------------ccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcC
Q 017657 176 ---------------------------------CDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERME 222 (368)
Q Consensus 176 ---------------------------------C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l 222 (368)
|..|+++|.+. ..+.+.++ +||..||+|..|++.|
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~--~~v~a~~~----------~~H~~CF~C~~C~~~L 152 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAA--EKVIGAGK----------SWHKSCFRCAKCGKSL 152 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSS--SCEEETTE----------EECTTTCBCTTTCCBC
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCc--EEEecCCC----------ccchhcCCccccCCCC
Confidence 67888999753 25667664 4699999999999998
Q ss_pred CCCCceEEccCCcccccchhhhhccCCCCCCcchH
Q 017657 223 PQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYL 257 (368)
Q Consensus 223 ~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~ 257 (368)
. +..|+ ..+|++||..||.+ .+.++|..|..
T Consensus 153 ~-~~~~~-~~~g~~yC~~cy~~--~f~~kc~~C~~ 183 (192)
T 1b8t_A 153 E-STTLA-DKDGEIYCKGCYAK--NFGPKGFGFGQ 183 (192)
T ss_dssp C-SSSEE-EETTEEEEHHHHHH--HTCCCCCCCCC
T ss_pred C-CCccc-ccCCEEeCHHHHHH--hcCCcCCCCCC
Confidence 5 44676 57999999999998 57889999883
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.89 E-value=3.2e-24 Score=193.36 Aligned_cols=124 Identities=20% Similarity=0.497 Sum_probs=108.2
Q ss_pred CCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCC--ceeeccCCcccccccccccccc--cccccCccccCCC
Q 017657 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD--IEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSNH 187 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~--~~f~~~dg~~yC~~cy~~~f~p--~C~~C~~~I~~~~ 187 (368)
..++|.+|+++|....++.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|++ +|..|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 56889999999965557899999999999999999999985 6899999999999999999999 7999999998642
Q ss_pred CcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhcc
Q 017657 188 GGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (368)
Q Consensus 188 ~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~ 247 (368)
.++.+.++. ||+.||+|..|++.|..+..|+ ..++++||..||.++++
T Consensus 84 -~~i~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~c~~~~~~ 131 (188)
T 1rut_X 84 -LVMRAQGNV----------YHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTALI 131 (188)
T ss_dssp -EEEEETTEE----------ECGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGCCTTTC
T ss_pred -EEEEcCCCE----------EeCCCCeECCCCCCCCCCCeEE-EECCeEECHHHHHHHhc
Confidence 466777654 5999999999999997678887 46999999999988543
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.84 E-value=1.4e-21 Score=158.36 Aligned_cols=98 Identities=26% Similarity=0.554 Sum_probs=87.9
Q ss_pred CCCCccccCCccccc-CceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccccCCCCc
Q 017657 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~ 189 (368)
.+.++|.+|+++|.. ++++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+++|..|+++|.+. +.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~-~~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAG-DQ 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSS-SC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccC-Ce
Confidence 467899999999964 7899999999999999999999999988899999999999999999999999999999843 23
Q ss_pred ceEEccccccccccCCCCccCCCCccCCCC
Q 017657 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCE 219 (368)
Q Consensus 190 ~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~ 219 (368)
++.+.++. ||+.||+|..|+
T Consensus 82 ~~~a~~~~----------~H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKGTV----------WHKDCFSGPSSG 101 (101)
T ss_dssp EEESSSCE----------EETTTCCCTTCC
T ss_pred EEEeCCcc----------hHHhCCCCCCCC
Confidence 67777654 699999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.9e-19 Score=151.13 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=90.5
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCC--CceeeccCCcccccccccccccc--cccccCccccCC
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSN 186 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~--~~~f~~~dg~~yC~~cy~~~f~p--~C~~C~~~I~~~ 186 (368)
...++|++|+++|..+.++.++++.||++||+|..|+++|. +..|+..+|++||+.||.++|++ +|.+|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 35689999999997666799999999999999999999997 36799999999999999999999 999999999963
Q ss_pred CCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhc
Q 017657 187 HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (368)
Q Consensus 187 ~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v 246 (368)
. +++.+ +.+..+++|+ ..++++||..|+.+..
T Consensus 83 ~---~~~~g------------------------~~~l~g~~f~-~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 83 D---VMVVG------------------------EPTLMGGEFG-DEDERLITRLENTQFD 114 (122)
T ss_dssp E---SSSSS------------------------SSSCCSCTTC-CTTCCCCEECTTTTTT
T ss_pred h---eEEcC------------------------CcCCCCCccE-ecCCEeEccCcchhch
Confidence 2 32222 2234688887 5799999999998743
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=8.3e-18 Score=139.51 Aligned_cols=102 Identities=17% Similarity=0.335 Sum_probs=85.6
Q ss_pred CCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCC--ceeeccCCcccccccccccccccccccCccccCCCCc
Q 017657 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD--IEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~--~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~ 189 (368)
+.++|.+|+++|....++.++++.||++||+|..|+++|.+ ..|+.++|++||+.||.++|+++|..|.. + .
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~---~ 75 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---G---D 75 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---C---S
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---C---c
Confidence 35789999999975668999999999999999999999985 68999999999999999999999998862 1 1
Q ss_pred ceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhh
Q 017657 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (368)
Q Consensus 190 ~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~ 245 (368)
++ + |.+.+..+++|+ +.++++||..|+.+.
T Consensus 76 ~~----------------------~---~~~~~~~g~~f~-~~~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 76 VM----------------------V---VGEPTLMGGEFG-DEDERLITRLENTQF 105 (114)
T ss_dssp CC----------------------C---SSCSSTTSSBCC-CSSSCCCEEEECTTC
T ss_pred ee----------------------E---cCCccCCCCeeE-EcCCEeecchhhhcc
Confidence 11 1 345555788887 679999999999864
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.1e-16 Score=121.44 Aligned_cols=71 Identities=24% Similarity=0.526 Sum_probs=66.4
Q ss_pred CccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccc-ccccccccccccccCcccc
Q 017657 114 RICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHK-SCYREHYHPKCDVCKHFIP 184 (368)
Q Consensus 114 ~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~-~cy~~~f~p~C~~C~~~I~ 184 (368)
++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+..+|++||+ .||.++|+++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5799999999778999999999999999999999999988999999999999 6999999999999997654
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.61 E-value=1.6e-16 Score=123.51 Aligned_cols=74 Identities=24% Similarity=0.503 Sum_probs=58.2
Q ss_pred CCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccc
Q 017657 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFI 183 (368)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I 183 (368)
+.+.++|.+|+++|..++.+.++++.||++||+|..|+++|....|+..++++||+.||.++|+++|.+|++..
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 45678999999999878999999999999999999999999988899999999999999999999999998754
No 12
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=9.7e-16 Score=121.60 Aligned_cols=69 Identities=30% Similarity=0.642 Sum_probs=64.2
Q ss_pred CCCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.....++|.+|+++| .+++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|+|..
T Consensus 21 ~~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 21 AGKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTTCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 345779999999999 689999999999999999999999999889999999999999999999999963
No 13
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.6e-16 Score=118.22 Aligned_cols=70 Identities=17% Similarity=0.458 Sum_probs=65.0
Q ss_pred CCCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccc-ccccccccccccc
Q 017657 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHK-SCYREHYHPKCDV 178 (368)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~-~cy~~~f~p~C~~ 178 (368)
++...++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+..++++||+ .||.++|+|+|..
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 456789999999999778999999999999999999999999988899999999999 7999999999964
No 14
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.3e-15 Score=117.07 Aligned_cols=69 Identities=23% Similarity=0.527 Sum_probs=64.0
Q ss_pred CCCccccCCccccc---CceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccC
Q 017657 112 GYRICAGCNNEIGH---GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCK 180 (368)
Q Consensus 112 ~~~~C~~C~~~I~~---g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~ 180 (368)
..++|.+|+++|.. .++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..+.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 56889999999962 3899999999999999999999999998999999999999999999999998875
No 15
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.1e-15 Score=114.97 Aligned_cols=67 Identities=25% Similarity=0.625 Sum_probs=62.5
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.++|.+|+++| .++.|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 3 ~~~~~C~~C~~~I-~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAI-TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCC-CTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEe-CcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 3668999999999 578899999999999999999999999889999999999999999999999964
No 16
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.4e-15 Score=118.40 Aligned_cols=67 Identities=36% Similarity=0.756 Sum_probs=62.4
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
...++|.+|+++|..+++|.++++.||++||+|..|+++|.+ .|+..++++||+.||.++|+++|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 467899999999987899999999999999999999999986 6899999999999999999999974
No 17
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.7e-15 Score=114.23 Aligned_cols=67 Identities=24% Similarity=0.610 Sum_probs=62.1
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.++|.+|+++| .++.|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 3 ~~~~~C~~C~~~I-~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPI-TTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBC-CSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCee-ccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 3568899999999 477899999999999999999999999889999999999999999999999963
No 18
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5e-15 Score=115.18 Aligned_cols=72 Identities=24% Similarity=0.465 Sum_probs=65.4
Q ss_pred cCCCCCCCccccCCcccc-cCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 107 IQFPEGYRICAGCNNEIG-HGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 107 ~~~~~~~~~C~~C~~~I~-~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.....++|.+|+++|. .+.++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 9 ~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 9 CYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred HhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 445567789999999996 378889999999999999999999999989999999999999999999999964
No 19
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.9e-15 Score=113.51 Aligned_cols=67 Identities=25% Similarity=0.630 Sum_probs=62.3
Q ss_pred CCCccccCCccccc-CceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 112 GYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 112 ~~~~C~~C~~~I~~-g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
..++|.+|+++|.. +.++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 56899999999976 48899999999999999999999999889999999999999999999999963
No 20
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.7e-15 Score=112.91 Aligned_cols=67 Identities=30% Similarity=0.677 Sum_probs=62.2
Q ss_pred CCCccccCCcccccC-ceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 112 GYRICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
..++|.+|+++|..+ .++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 567999999999764 6899999999999999999999999889999999999999999999999963
No 21
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=7e-15 Score=116.82 Aligned_cols=73 Identities=18% Similarity=0.378 Sum_probs=66.5
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFI 183 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I 183 (368)
.+...|.+|+++|..++.|.++++.||+.||+|..|+++|....|+..++++||+.||.++|+++|..+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 4678999999999777899999999999999999999999988899999999999999999999998655443
No 22
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.8e-15 Score=114.20 Aligned_cols=71 Identities=25% Similarity=0.585 Sum_probs=64.6
Q ss_pred cCCCCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 107 IQFPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 107 ~~~~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.....++|++|+++|. +++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 9 ~y~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 9 DFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred HHhhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 345556789999999994 68899999999999999999999999888999999999999999999999964
No 23
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.5e-15 Score=112.15 Aligned_cols=66 Identities=26% Similarity=0.633 Sum_probs=60.8
Q ss_pred CCCCccccCCccccc---CceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGH---GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKC 176 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~---g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C 176 (368)
.+.++|.+|+++|.. ..+|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 367899999999963 388999999999999999999999999999999999999999999999986
No 24
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=7.7e-15 Score=113.51 Aligned_cols=71 Identities=23% Similarity=0.558 Sum_probs=64.6
Q ss_pred cCCCCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 107 IQFPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 107 ~~~~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.....++|.+|+++| .++.|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 9 cy~~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 9 CYENKFAPRCARCSKTL-TQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCCCSSCCCTTTCCCC-CSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred HHccccCCcCCCCCCEe-cCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 44556779999999999 567899999999999999999999999889999999999999999999999963
No 25
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.52 E-value=3.5e-15 Score=111.32 Aligned_cols=63 Identities=27% Similarity=0.654 Sum_probs=59.4
Q ss_pred CCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccc
Q 017657 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPK 175 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~ 175 (368)
..++|++|+++|. ++++.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 5688999999996 89999999999999999999999999989999999999999999999875
No 26
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=9.1e-15 Score=113.53 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=62.1
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeecc-CCcccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTS-ENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~-dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.++|++|+++|. +++|.++++.||++||+|..|+++|.+..|+.. +|++||+.||.++|+++|.+
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 67899999999995 789999999999999999999999998888876 78999999999999999974
No 27
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.6e-14 Score=114.24 Aligned_cols=66 Identities=23% Similarity=0.528 Sum_probs=61.6
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~ 177 (368)
....+|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 46789999999994 6889999999999999999999999988899999999999999999999975
No 28
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7.3e-15 Score=112.71 Aligned_cols=67 Identities=21% Similarity=0.476 Sum_probs=60.4
Q ss_pred CCCCccccCCccccc-CceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~ 177 (368)
.+..+|.+|+++|.. +.++.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|+++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 467899999999974 5678899999999999999999999988899999999999999999999996
No 29
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=6.7e-15 Score=113.90 Aligned_cols=66 Identities=24% Similarity=0.505 Sum_probs=61.3
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~ 177 (368)
...++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45789999999994 6899999999999999999999999988899999999999999999999875
No 30
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.2e-14 Score=109.62 Aligned_cols=66 Identities=29% Similarity=0.672 Sum_probs=60.6
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~ 177 (368)
.+..+|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|.++..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 46789999999994 8899999999999999999999999998999999999999999999988653
No 31
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=2.9e-14 Score=110.77 Aligned_cols=71 Identities=24% Similarity=0.506 Sum_probs=64.0
Q ss_pred cCCCCCCCccccCCcccccC-ceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 017657 107 IQFPEGYRICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (368)
Q Consensus 107 ~~~~~~~~~C~~C~~~I~~g-~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~ 177 (368)
.+.....++|.+|+++|..+ .+|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.
T Consensus 9 cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 9 CTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred HHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 44556678999999999654 679999999999999999999999988999999999999999999999875
No 32
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=5.3e-14 Score=109.74 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=60.3
Q ss_pred CCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceee--ccCCcccccccccccccccc
Q 017657 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFS--TSENRPYHKSCYREHYHPKC 176 (368)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~--~~dg~~yC~~cy~~~f~p~C 176 (368)
..+..+|.+|+++|+.++.|.++++.||++||+|..|+++|....|+ ..||++||+.||.++|.+-+
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 34678999999999888899999999999999999999999988887 47999999999999887644
No 33
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-14 Score=110.25 Aligned_cols=80 Identities=25% Similarity=0.580 Sum_probs=65.8
Q ss_pred CCcccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 017657 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (368)
Q Consensus 159 dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C 238 (368)
+|+|||+.||.++|+++|..|+++|.+. +.++.+.++ .||+.||+|..|++.|. +..|+ ..++++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~-~~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~-~~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHD-SRELFYEDR----------HFHEGCFRCCRCQRSLA-DEPFT-CQDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS-CCBCCCSSC----------CCBTTTSBCTTTCCBCS-SCCEE-EETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccC-cEEEEeCCc----------cccccCCeecCCCCccC-CCccE-eeCCEEEC
Confidence 5889999999999999999999999942 235655553 57999999999999985 66776 46999999
Q ss_pred cchhhhhccCCCCCC
Q 017657 239 LECLDSAIMDTNECQ 253 (368)
Q Consensus 239 ~~C~~~~v~~~~~C~ 253 (368)
..||.+ ...+.|+
T Consensus 68 ~~c~~~--~~~~~C~ 80 (82)
T 2ehe_A 68 NDCYCS--AFSSGPS 80 (82)
T ss_dssp TTTSSC--CGGGSSC
T ss_pred HHHHhh--hcCCCCC
Confidence 999987 4566775
No 34
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=3.4e-14 Score=110.11 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=59.3
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~ 177 (368)
.+.++|.+|+++|. +++|.++++.||++||+|..|+++|.+..| ..+|++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 46789999999995 899999999999999999999999998754 889999999999999999764
No 35
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=7.5e-14 Score=107.88 Aligned_cols=78 Identities=17% Similarity=0.465 Sum_probs=66.1
Q ss_pred CCcccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 017657 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (368)
Q Consensus 159 dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C 238 (368)
+|++||+.||.++|+++|..|+++|.++ .+.+.++ .||..||+|..|++.| .+..|+ ..++++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQ----------PWHRECLVCTGCQTPL-AGQQFT-SRDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSS----------EECTTTCBCSSSCCBC-TTCCEE-ECSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCc----------hhhhhhCCcccCCCcC-CCCeeE-eECCEEEC
Confidence 5889999999999999999999999863 5766654 4699999999999999 456776 47999999
Q ss_pred cchhhhhccCCCCCC
Q 017657 239 LECLDSAIMDTNECQ 253 (368)
Q Consensus 239 ~~C~~~~v~~~~~C~ 253 (368)
..||.+ ++.+.|+
T Consensus 66 ~~cy~~--~f~~~c~ 78 (80)
T 2cuq_A 66 VACFGE--LFASGPS 78 (80)
T ss_dssp HHHHHH--HTTCSTT
T ss_pred HHHHHH--HcCCCCC
Confidence 999998 4566765
No 36
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=4.2e-14 Score=107.90 Aligned_cols=63 Identities=25% Similarity=0.536 Sum_probs=57.4
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCC-CceeeccCCcccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHP 174 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~dg~~yC~~cy~~~f~p 174 (368)
.+.++|++|+++| .+++|.++++.||++||+|..|+++|. +..|+..++++||+.||.+++..
T Consensus 3 ~~~~~C~~C~~~I-~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 3 SGSSGCDSCEKYI-TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSCCSCSSSCCCC-SSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred cCcCCcccCCCEe-cCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 3568999999999 578999999999999999999999998 78899999999999999887654
No 37
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=4.9e-14 Score=106.77 Aligned_cols=67 Identities=27% Similarity=0.628 Sum_probs=59.2
Q ss_pred CCCCccccCCccccc-CceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 017657 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|. +|..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~ 70 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPS 70 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSS
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCC
Confidence 357899999999965 468999999999999999999999998889999999999999998873 4543
No 38
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=8.3e-14 Score=107.96 Aligned_cols=75 Identities=15% Similarity=0.334 Sum_probs=63.6
Q ss_pred CCcccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 017657 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (368)
Q Consensus 159 dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C 238 (368)
++.+||+.||.++|+++|..|+++|.+. .+.+.++ .||+.||+|..|++.|..+..|+...++++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEF----------KYHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTC----------CBCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCc----------eeccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4679999999999999999999999943 5666654 46999999999999996677776447999999
Q ss_pred cchhhhhc
Q 017657 239 LECLDSAI 246 (368)
Q Consensus 239 ~~C~~~~v 246 (368)
..||.+++
T Consensus 68 ~~c~~~~~ 75 (81)
T 1x6a_A 68 GKCHNEVV 75 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998854
No 39
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1e-13 Score=107.10 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCcccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 017657 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (368)
Q Consensus 159 dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C 238 (368)
+|++||+.||.++|+++|..|+++|.++ .+.+.+. .||..||+|..|++.|.. ..|+ ..++++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDT----------VWHPECFVCGDCFTSFST-GSFF-ELDGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTE----------EECTTTCBCSSSCCBSCS-SCCE-ESSSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCC----------eEecCcCChhhCCCCCCC-CcEE-eECCEEEC
Confidence 5789999999999999999999999963 5777765 469999999999999954 4576 46999999
Q ss_pred cchhhhhccCCCCCCc
Q 017657 239 LECLDSAIMDTNECQP 254 (368)
Q Consensus 239 ~~C~~~~v~~~~~C~~ 254 (368)
..||.+ .+.++|+.
T Consensus 66 ~~~y~~--~f~~~C~~ 79 (80)
T 1x3h_A 66 ELHYHH--RRGSGPSS 79 (80)
T ss_dssp HHHHHH--HHSSSCCC
T ss_pred HHHHHH--HcCCCCCC
Confidence 999998 45677753
No 40
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.3e-13 Score=107.01 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=66.1
Q ss_pred CCcccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 017657 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (368)
Q Consensus 159 dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C 238 (368)
+|++||+.||. ++.++|..|+++|.+ .++.+.++ .||+.||+|..|++.|. +..|+...+|++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~---~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILD---RILRAMGK----------AYHPGCFTCVVCHRGLD-GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCS---CCEEETTE----------EECTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecc---eeEEECCc----------cccHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence 68999999999 799999999999985 36777765 46999999999999984 66776434789999
Q ss_pred cchhhhhccCCCCCCc
Q 017657 239 LECLDSAIMDTNECQP 254 (368)
Q Consensus 239 ~~C~~~~v~~~~~C~~ 254 (368)
..||.+ .+.++|+.
T Consensus 67 ~~cy~~--~f~~~C~~ 80 (81)
T 2dlo_A 67 IEDFHR--KFASGPSS 80 (81)
T ss_dssp HHHHHH--HTTSSSCC
T ss_pred HHHHHH--HhcCcCCC
Confidence 999988 46778863
No 41
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.42 E-value=1.1e-13 Score=124.56 Aligned_cols=73 Identities=21% Similarity=0.472 Sum_probs=68.7
Q ss_pred CCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCcccc
Q 017657 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIP 184 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~ 184 (368)
+.++|.+|+++|..++.|.++++.||++||+|..|+++|....|+..+|++||+.||.++|+++|.+|++++.
T Consensus 114 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 4678999999997788999999999999999999999998888999999999999999999999999999864
No 42
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.4e-14 Score=106.55 Aligned_cols=74 Identities=20% Similarity=0.462 Sum_probs=62.0
Q ss_pred CCcccccccccccccccccccCccccCC--CCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcc
Q 017657 159 ENRPYHKSCYREHYHPKCDVCKHFIPSN--HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRK 236 (368)
Q Consensus 159 dg~~yC~~cy~~~f~p~C~~C~~~I~~~--~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~ 236 (368)
++++||+.||.++|+++|..|+++|.+. .+..+.+.++ +||..||+|..|++.|. +..|+ ..+|++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~-~~~~~~ 68 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQ----------SWHDYCFHCKKCSVNLA-NKRFV-FHQEQV 68 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTE----------EEETTTCBCSSSCCBCT-TSCCC-EETTEE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcc----------eeCcccCEehhcCCCCC-CCccE-eECCEE
Confidence 4789999999999999999999999961 1246777764 46999999999999985 56676 469999
Q ss_pred cccchhhh
Q 017657 237 LCLECLDS 244 (368)
Q Consensus 237 ~C~~C~~~ 244 (368)
||..||.+
T Consensus 69 yC~~cy~~ 76 (77)
T 2egq_A 69 YCPDCAKK 76 (77)
T ss_dssp CCHHHHHH
T ss_pred EChHHhcc
Confidence 99999975
No 43
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=1.2e-13 Score=107.08 Aligned_cols=71 Identities=24% Similarity=0.484 Sum_probs=62.3
Q ss_pred cCCCCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCC-ceee-ccCCcccccccccccccccccc
Q 017657 107 IQFPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD-IEFS-TSENRPYHKSCYREHYHPKCDV 178 (368)
Q Consensus 107 ~~~~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~-~~f~-~~dg~~yC~~cy~~~f~p~C~~ 178 (368)
.+.....++|++|+++|. +++|.++++.||++||+|..|+++|.. ..|. ..++++||+.||.++|++.|.+
T Consensus 9 ~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 9 DYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp CSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred HHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 445567889999999995 899999999999999999999999974 6677 5899999999999999988753
No 44
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.40 E-value=2e-13 Score=114.42 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=65.1
Q ss_pred ccccCCccccc-CceEeecCceecCCCcccCCCCCCC-CCceeeccCCcccccccccccccccccccCccccCC
Q 017657 115 ICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPI-TDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSN 186 (368)
Q Consensus 115 ~C~~C~~~I~~-g~~v~a~g~~wH~~CF~C~~C~~~L-~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~ 186 (368)
.|.+|+++|.. +.++.++++.||+.||+|..|+++| .+..|+..++++||+.||.++|.++|..|...+.+.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 89999999965 4677999999999999999999999 466799999999999999999999999998887653
No 45
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.38 E-value=1.9e-13 Score=102.96 Aligned_cols=63 Identities=21% Similarity=0.517 Sum_probs=56.9
Q ss_pred CCCCccccCCcccccCc-eEeecCceecCCCcccCCCCCCCCCceeeccCCccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGR-FLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYH 173 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~-~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~ 173 (368)
....+|.+|+++|..++ ++.++++.||+.||+|..|+++|....|+..+|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46789999999997555 5689999999999999999999998899999999999999998874
No 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.2e-13 Score=103.56 Aligned_cols=64 Identities=23% Similarity=0.522 Sum_probs=57.3
Q ss_pred cCCCCCCCccccCCccccc----CceEeecCceecCCCcccCCCCCCCCCceeeccCCcccccccccc
Q 017657 107 IQFPEGYRICAGCNNEIGH----GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYRE 170 (368)
Q Consensus 107 ~~~~~~~~~C~~C~~~I~~----g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~ 170 (368)
.+.....++|++|+++|.. .+++.++++.||+.||+|..|+++|.+..|+..++++||+.||.+
T Consensus 9 cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 9 CYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred HhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 4455677999999999962 388999999999999999999999999899999999999999965
No 47
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=4.6e-13 Score=103.89 Aligned_cols=80 Identities=16% Similarity=0.354 Sum_probs=64.5
Q ss_pred CCcccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccc
Q 017657 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (368)
Q Consensus 159 dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C 238 (368)
++.+||+.||.++|.++|..|+++|...+ .++.+.++ .||+.||+|..|++.|.. ..|+ ..++++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGT----------VWHKDCFTCSNCKQVIGT-GSFF-PKGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSC----------EEETTTCCCSSSCCCCTT-SCEE-EETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcc----------ccccccCchhhCCCccCC-CccE-eeCCEEEC
Confidence 46899999999999999999999998532 35666654 469999999999999854 4676 46999999
Q ss_pred cchhhhhccCCCCCC
Q 017657 239 LECLDSAIMDTNECQ 253 (368)
Q Consensus 239 ~~C~~~~v~~~~~C~ 253 (368)
..||.++ ..++|.
T Consensus 68 ~~cy~~~--f~~~~~ 80 (82)
T 1x63_A 68 VTCHETK--FASGPS 80 (82)
T ss_dssp HHHHHHH--TSCCCS
T ss_pred HHHHHHH--hCCCCC
Confidence 9999884 445543
No 48
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.36 E-value=3.2e-13 Score=113.47 Aligned_cols=63 Identities=22% Similarity=0.594 Sum_probs=56.8
Q ss_pred CCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCC--CceeeccCCccccccccccccc
Q 017657 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYH 173 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~--~~~f~~~dg~~yC~~cy~~~f~ 173 (368)
...++|++|+++|....++.++++.||+.||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 45789999999997556799999999999999999999997 4689999999999999998874
No 49
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.34 E-value=3.1e-13 Score=100.62 Aligned_cols=59 Identities=25% Similarity=0.635 Sum_probs=54.3
Q ss_pred CCccccCCccccc-CceEeecCceec--CCCcccCCCCCCCCCceeeccCCcccc-ccccccc
Q 017657 113 YRICAGCNNEIGH-GRFLNCLDVFWH--PECFCCHACHQPITDIEFSTSENRPYH-KSCYREH 171 (368)
Q Consensus 113 ~~~C~~C~~~I~~-g~~v~a~g~~wH--~~CF~C~~C~~~L~~~~f~~~dg~~yC-~~cy~~~ 171 (368)
.+.|++|+++|.. ++.|.++++.|| ++||+|..|+++|.+..|+..+|++|| ++||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999976 589999999999 999999999999999999999999999 8998764
No 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=3.3e-12 Score=98.95 Aligned_cols=73 Identities=16% Similarity=0.341 Sum_probs=60.2
Q ss_pred CcccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCccccc
Q 017657 160 NRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL 239 (368)
Q Consensus 160 g~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~ 239 (368)
+.+||+.||.++|+++|..|+++|.+ .++.+.++ .||+.||+|..|++.|..+..| ...++.+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~---~~v~a~~~----------~wH~~CF~C~~C~~~L~~~~~~-~~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEG---EVVSALGK----------TYHPDCFVCAVCRLPFPPGDRV-TFNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCS---CCEEETTE----------EECTTTSSCSSSCCCCCSSSCE-EEETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEecc---ceEEECCc----------eeCccCCccccCCCCCCCCCEE-EeCCCCEECh
Confidence 56899999999999999999999995 36888765 4699999999999998655555 4555567999
Q ss_pred chhhhhc
Q 017657 240 ECLDSAI 246 (368)
Q Consensus 240 ~C~~~~v 246 (368)
.|+.++.
T Consensus 68 ~C~~~~~ 74 (81)
T 1v6g_A 68 KCSLPVS 74 (81)
T ss_dssp HHHSCCS
T ss_pred hhhcccC
Confidence 9998753
No 51
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.23 E-value=1.1e-12 Score=109.85 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=83.0
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCC
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~ 250 (368)
+|.++|..|+++|.+. .++.+.++. ||+.||+|..|++.|. +..|+ ..||++||..||.+ ...+
T Consensus 1 ~~~~~C~~C~~~I~~~--~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~cy~~--~~~~ 64 (126)
T 2xqn_T 1 SEKPRCAGCDELIFSN--EYTQAENQN----------WHLKHFCCFDCDSILA-GEIYV-MVNDKPVCKPCYVK--NHAV 64 (126)
T ss_dssp -CCCBBTTTSSBCCSS--CEEEETTEE----------ECGGGSBCTTTCCBCT-TSEEE-EETTEEEEHHHHHH--HSCC
T ss_pred CcCCCCccCCCEeCCc--eEEeeCCCC----------ccCCCCCcCCCCCCCC-cCEEE-eECCEEechHHhCc--CcCc
Confidence 3678999999999953 267777654 6999999999999984 66776 47999999999998 5789
Q ss_pred CCCcchHhHHHHHHHhccccccccchhhHhHHHHHhhhc--CCC---------CCCCCCcccCCcccccceee
Q 017657 251 ECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARD--GEK---------NGYYHMPETRGLCLSEEQTV 312 (368)
Q Consensus 251 ~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~--~e~---------~g~~~~~~~~G~~~~E~~~~ 312 (368)
.|..|.++|.. +.+. +.|+++.|| .+. .....+.+.+|..||+.++.
T Consensus 65 ~C~~C~~~I~~---------~~~~------~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~ 122 (126)
T 2xqn_T 65 VCQGCHNAIDP---------EVQR------VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECK 122 (126)
T ss_dssp BCTTTCSBCCT---------TSCE------EEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHH
T ss_pred cCcccCCcCCc---------CceE------EECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhh
Confidence 99999954431 0222 468899998 541 22234557789999987764
No 52
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.21 E-value=9e-12 Score=111.11 Aligned_cols=122 Identities=12% Similarity=0.132 Sum_probs=88.5
Q ss_pred CCccccccccc---ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCc
Q 017657 159 ENRPYHKSCYR---EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGR 235 (368)
Q Consensus 159 dg~~yC~~cy~---~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~ 235 (368)
++..||..++. ....++|..|+++|.+. .++.+.++ .||+.||+|..|++.|. +..|. .+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~--~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~--~~g~ 107 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDR--FILKALDR----------HWHSKCLKCSDCHVPLA-ERCFS--RGES 107 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCS--EEEEETTE----------EECSSTTSCTTTCCCCS-SCCEE--ETTE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCc--eeEEecCC----------eEccccCccCCCCCccC-CCcee--ECCE
Confidence 45668887765 55578999999999963 25667664 46999999999999985 44453 6999
Q ss_pred ccccchhhhhccCCCCCCcchHhHHHHHHHhccccccccchhhHhHHHHHhhhcCCC---------C--CCCCCcccCCc
Q 017657 236 KLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEK---------N--GYYHMPETRGL 304 (368)
Q Consensus 236 ~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~---------~--g~~~~~~~~G~ 304 (368)
+||..||.+ .+.+.|..|.+.| ...--+ ..|+++.||.+. . |...+...+|.
T Consensus 108 ~yC~~~y~~--~f~~kC~~C~~~I-----------~~~~~v----~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~ 170 (182)
T 2jtn_A 108 VYCKDDFFK--RFGTKCAACQLGI-----------PPTQVV----RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSR 170 (182)
T ss_dssp EECHHHHHH--TTSCCCTTTCCCC-----------CSSCCC----CEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSC
T ss_pred eeecCcccc--ccccccccCCCcc-----------CCCceE----EecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCE
Confidence 999999998 5789999999544 321100 358889998752 1 33234466889
Q ss_pred ccccceee
Q 017657 305 CLSEEQTV 312 (368)
Q Consensus 305 ~~~E~~~~ 312 (368)
.||+.+|.
T Consensus 171 ~yC~~cy~ 178 (182)
T 2jtn_A 171 LVCKADYE 178 (182)
T ss_dssp EECHHHHH
T ss_pred EECHHHHH
Confidence 99988774
No 53
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=8.5e-12 Score=96.61 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=54.4
Q ss_pred cCCCCCCCccccCCcccccCceEeecCceecCCCcccCCCCCCCCCceeeccCCc-ccccccccccc
Q 017657 107 IQFPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENR-PYHKSCYREHY 172 (368)
Q Consensus 107 ~~~~~~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~~C~~~L~~~~f~~~dg~-~yC~~cy~~~f 172 (368)
.|.....++|++|+++|. +++|.++++.||++||+|..|+++|....|+..++. +||+.||.+++
T Consensus 9 dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 9 DYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp CGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred HHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 344556789999999995 889999999999999999999999986666665665 69999997754
No 54
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.10 E-value=1.4e-11 Score=102.99 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=79.0
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCC-CCCceEEccCCcccccchhhhhccCC
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEP-QDTAYVALDDGRKLCLECLDSAIMDT 249 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~-~~~~f~~~~dg~~~C~~C~~~~v~~~ 249 (368)
++.++|..|+++|.+.. ++.+.++ .||+.||+|..|++.|. .+..|+ ..+|++||..||.++....
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~~~ 69 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGNS 69 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTE----------EECHHHHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHCCC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCc----------eeHhhCCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcCCC
Confidence 56789999999999642 5777764 46999999999999985 245677 5699999999999954333
Q ss_pred CCCCcchHhHHHHHHHhccccccccchhhHhHHHHHhhhcCCCCCCCCCcccCCcccccceeee
Q 017657 250 NECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEKNGYYHMPETRGLCLSEEQTVT 313 (368)
Q Consensus 250 ~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~~g~~~~~~~~G~~~~E~~~~~ 313 (368)
..|+.|.++|. ... +.++++ .......|...+|..||..|+..
T Consensus 70 ~~C~~C~~~I~-----------~~~------~~~~g~----~~l~g~~f~~~~~~~yC~~~~~~ 112 (122)
T 1m3v_A 70 GAGGSGGHMGS-----------GGD------VMVVGE----PTLMGGEFGDEDERLITRLENTQ 112 (122)
T ss_dssp CSSSCSSCCSC-----------CEE------SSSSSS----SSCCSCTTCCTTCCCCEECTTTT
T ss_pred CccccCCCCcC-----------chh------eEEcCC----cCCCCCccEecCCEeEccCcchh
Confidence 39999996554 211 112222 22334467799999999988753
No 55
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.05 E-value=5.5e-11 Score=95.60 Aligned_cols=91 Identities=20% Similarity=0.391 Sum_probs=69.7
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCC
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~ 250 (368)
++.++|..|+++|... +.++.+.++ .||..||+|..|++.| .+..|+ ..+|++||..||.+ ...+
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~g~~yC~~cy~~--~~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGAD-SKEVHYKNR----------FWHDTCFRCAKCLHPL-ANETFV-AKDNKILCNKCTTR--EDSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSS-SCEEEETTE----------EEETTTCCCSSSCCCT-TSSCCE-EETTEEECHHHHTT--CCCC
T ss_pred CCCCcCcccCCcccCC-ceEEEECcc----------ChhhcCCcccccCCCC-CcCeeE-CcCCEEEChhHhhh--hcCC
Confidence 5678999999999742 236777764 4699999999999999 466676 46999999999998 5789
Q ss_pred CCCcchHhHHHHHHHhccccccccchhhHhHHHHHhhhcCC
Q 017657 251 ECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGE 291 (368)
Q Consensus 251 ~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e 291 (368)
+|..|.++|.. .+++ +.|+++.||.+
T Consensus 68 ~C~~C~~~I~~---------~~~~------~~a~~~~~H~~ 93 (101)
T 2cup_A 68 KCKGCFKAIVA---------GDQN------VEYKGTVWHKD 93 (101)
T ss_dssp BCSSSCCBCCS---------SSCE------EESSSCEEETT
T ss_pred ccccCCCcccc---------CCeE------EEeCCcchHHh
Confidence 99999954420 0233 46788888765
No 56
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=1.7e-10 Score=88.17 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=58.7
Q ss_pred ccccccccccCccccCC-CCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccC
Q 017657 170 EHYHPKCDVCKHFIPSN-HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD 248 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~-~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~ 248 (368)
++|.++|..|+++|.+. ++.++.+.++ .||+.||+|..|++.|. +..|+ ..+|++||..||.+ .+
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~cy~~--~f 67 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDS----------QWHSECFNCGKCSVSLV-GKGFL-TQNKEIFCQKCGSG--MD 67 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTE----------EEEGGGCBCTTTCCBCS-SSCEE-EETTEEEETTTTCC--CC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCc----------ccCcccCChhhCCCcCC-CCceE-eECCEEECHHHhhh--hh
Confidence 46899999999999961 1246777764 46999999999999984 66777 46999999999998 67
Q ss_pred CCCCCcc
Q 017657 249 TNECQPL 255 (368)
Q Consensus 249 ~~~C~~c 255 (368)
.+.|+++
T Consensus 68 ~~~C~~~ 74 (76)
T 1x68_A 68 TDISGPS 74 (76)
T ss_dssp CCSSSSS
T ss_pred CCcCCCC
Confidence 8899875
No 57
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.00 E-value=1.6e-10 Score=103.55 Aligned_cols=67 Identities=13% Similarity=0.305 Sum_probs=54.2
Q ss_pred ccccCCcccccC-ceEeecCceecCCCcccCCCCCCCC-CceeeccCCcccccccccccccccccccCc
Q 017657 115 ICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHPKCDVCKH 181 (368)
Q Consensus 115 ~C~~C~~~I~~g-~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~ 181 (368)
+|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||+.||.+++.++|...+.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 799999999654 4788999999999999999999995 567999999999999999999999987765
No 58
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.98 E-value=1.2e-10 Score=97.93 Aligned_cols=61 Identities=21% Similarity=0.398 Sum_probs=54.6
Q ss_pred ccccCCcccccC-ceEeecCceecCCCcccCCCCCCCC-CceeeccCCccccccccccccccc
Q 017657 115 ICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHPK 175 (368)
Q Consensus 115 ~C~~C~~~I~~g-~~v~a~g~~wH~~CF~C~~C~~~L~-~~~f~~~dg~~yC~~cy~~~f~p~ 175 (368)
+|.+|+++|... .++.++++.||++||+|..|+++|. +..|+..++++||+.||.++|+++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 899999999643 5789999999999999999999994 677999999999999999887653
No 59
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.97 E-value=5.9e-10 Score=87.99 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=60.6
Q ss_pred cccccccccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccc
Q 017657 161 RPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLE 240 (368)
Q Consensus 161 ~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~ 240 (368)
...+...+...+.++|..|+++|.+ ..+.+.++ .||+.||+|..|++.|. +..|+ ..+|++||..
T Consensus 13 ~~~~~~~~~~~~~~~C~~C~~~I~~---~~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~ 77 (90)
T 2dar_A 13 VQRAEHIPAGKRTPMCAHCNQVIRG---PFLVALGK----------SWHPEEFNCAHCKNTMA-YIGFV-EEKGALYCEL 77 (90)
T ss_dssp CBCCEEECTTTCCCBBSSSCCBCCS---CEEEETTE----------EECTTTCBCSSSCCBCS-SSCBE-ESSSCEECHH
T ss_pred hhhcccCCCCCCCCCCccCCCEecc---eEEEECCc----------cccccCCccCCCCCCCC-CCEeE-eECCEEECHH
Confidence 3445555677889999999999974 36777765 46999999999999995 56676 5799999999
Q ss_pred hhhhhccCCCCCC
Q 017657 241 CLDSAIMDTNECQ 253 (368)
Q Consensus 241 C~~~~v~~~~~C~ 253 (368)
||.+ .+.++|+
T Consensus 78 cy~~--~f~~~c~ 88 (90)
T 2dar_A 78 CYEK--FFASGPS 88 (90)
T ss_dssp HHHH--HTSCCCC
T ss_pred HHHH--HcCCCCC
Confidence 9998 4667775
No 60
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=3.8e-10 Score=85.78 Aligned_cols=63 Identities=21% Similarity=0.424 Sum_probs=52.0
Q ss_pred ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhc
Q 017657 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v 246 (368)
.+|+++|..|+++|.+. +|.+.+ .+||+.||+|..|++.|..+..|+ ..++++||..|+.++.
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~----------~~wH~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGE----------KHYHPSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAAR 64 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSS----------CCBCTTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTS
T ss_pred CcCcCCcccCCCEecCe---eEEeCC----------CCCCCCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhh
Confidence 36789999999999963 566665 357999999999999996577777 5699999999998753
No 61
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.93 E-value=7.4e-10 Score=82.86 Aligned_cols=66 Identities=17% Similarity=0.397 Sum_probs=54.0
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCC
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~ 250 (368)
++.++|..|+++|.++ .+.+.++ .||..||+|..|++.|. +..|+ ..++++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQ----------PWHADCFVCVTCSKKLA-GQRFT-AVEDQYYCVDCYKN--FVSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTE----------EECTTTTBCTTTCCBCT-TSCEE-ECSSCEEEHHHHHH--HHTC
T ss_pred CCcCCCcccCCEeCcc---eEEECcc----------ccccCcCEECCCCCCCC-CCccE-eECCEEECHHHhHH--HhcC
Confidence 5678999999999853 5777764 46999999999999984 66776 56999999999998 4566
Q ss_pred CCC
Q 017657 251 ECQ 253 (368)
Q Consensus 251 ~C~ 253 (368)
.|.
T Consensus 66 ~C~ 68 (69)
T 2cur_A 66 PSS 68 (69)
T ss_dssp SCC
T ss_pred CCC
Confidence 775
No 62
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.93 E-value=7.6e-10 Score=83.32 Aligned_cols=69 Identities=17% Similarity=0.437 Sum_probs=55.3
Q ss_pred ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCC
Q 017657 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~ 249 (368)
++|+++|..|+++|.+.+ .++.+.++ .||..||+|..|++.|. +..|+ ..+|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGS----------SWHETCFICHRCQQPIG-TKSFI-PKDNQNFCVPCYEK--QHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTE----------EEETTTTCCSSSCCCCC-SSSEE-EETTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcC----------eecccCCcccccCCccC-CCccC-ccCCeEECHHHHhH--HhC
Confidence 468899999999999632 36777764 46999999999999985 44676 46999999999998 466
Q ss_pred CCCC
Q 017657 250 NECQ 253 (368)
Q Consensus 250 ~~C~ 253 (368)
+.|+
T Consensus 67 ~~C~ 70 (72)
T 1x4k_A 67 SGPS 70 (72)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7775
No 63
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.91 E-value=7.5e-10 Score=82.97 Aligned_cols=67 Identities=19% Similarity=0.391 Sum_probs=54.1
Q ss_pred ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCC
Q 017657 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~ 249 (368)
+++.++|..|+++|.++ .+.+.++ .||+.||+|..|++.| .+..|+ ..++++||..||.+ ...
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC~~cy~~--~f~ 64 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTG---GVTYREQ----------PWHKECFVCTACRKQL-SGQRFT-ARDDFAYCLNCFCD--LYA 64 (70)
T ss_dssp CCCCCBCSSSCCBCCSS---EEESSSS----------EEETTTSBCSSSCCBC-TTSCCE-ESSSSEECHHHHHH--HTC
T ss_pred CCCCCCCcccCCeeccc---eEEECcc----------ccCCCCCccCCCCCcC-CcCceE-eeCCeEECHHHHHH--Hhc
Confidence 35789999999999853 4666654 4699999999999998 466776 46999999999988 466
Q ss_pred CCCC
Q 017657 250 NECQ 253 (368)
Q Consensus 250 ~~C~ 253 (368)
++|.
T Consensus 65 ~~c~ 68 (70)
T 2d8z_A 65 SGPS 68 (70)
T ss_dssp CCCT
T ss_pred cccC
Confidence 7775
No 64
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.89 E-value=9.8e-10 Score=82.71 Aligned_cols=69 Identities=19% Similarity=0.417 Sum_probs=54.4
Q ss_pred ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCC
Q 017657 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~ 249 (368)
+++.++|..|+++|.... .++.+.++ .||..||+|..|++.|. +..|+ ..+|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGGQ----------TWHEHCFLCSGCEQPLG-SRSFV-PDKGAHYCVPCYEN--KFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTTC----------CEETTTCBCTTTCCBTT-TSCEE-EETTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCccccCc-cEEEECcc----------ccCcccCeECCCCCcCC-CCccC-CcCCeEECHHHHHH--Hcc
Confidence 467899999999999531 35555543 57999999999999985 45676 46999999999988 567
Q ss_pred CCCC
Q 017657 250 NECQ 253 (368)
Q Consensus 250 ~~C~ 253 (368)
++|+
T Consensus 67 ~~C~ 70 (72)
T 1wyh_A 67 SGPS 70 (72)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 7775
No 65
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.88 E-value=2.8e-10 Score=100.21 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=79.5
Q ss_pred cccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCC
Q 017657 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNEC 252 (368)
Q Consensus 173 ~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C 252 (368)
.++|..|+++|.+. .++.+.++ .||..||+|..|++.|. +..| ..||++||..||.+ .+.+.|
T Consensus 6 ~~~C~~C~~~I~~~--~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f--~~~g~~yC~~~y~~--~f~~~C 68 (169)
T 2rgt_A 6 IPMCAGCDQHILDR--FILKALDR----------HWHSKCLKCSDCHVPLA-ERCF--SRGESVYCKDDFFK--RFGTKC 68 (169)
T ss_dssp -CBBSSSSSBCCSS--SCEECSSC----------EECTTTSBCTTTCCBCC-SCCE--ESSSCEECHHHHHH--HHSCBC
T ss_pred CCccccCCCccCCc--EEEEECCc----------EEccccCccCCCCCcCC-CCCc--ccCCeeeecccccc--cccccc
Confidence 57999999999864 25666654 46999999999999984 4445 36999999999998 457899
Q ss_pred CcchHhHHHHHHHhccccccccchhhHhHHHHHhhhcCCC---------C--CCCCCcccCCcccccceeeee
Q 017657 253 QPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEK---------N--GYYHMPETRGLCLSEEQTVTT 314 (368)
Q Consensus 253 ~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~---------~--g~~~~~~~~G~~~~E~~~~~~ 314 (368)
..|.+.|.. .+. + +.|+++.||.+. . |...+...+|..||+.+|...
T Consensus 69 ~~C~~~I~~----------~~~-v----~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~ 126 (169)
T 2rgt_A 69 AACQLGIPP----------TQV-V----RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 126 (169)
T ss_dssp TTTCCBCCT----------TSE-E----EEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHH
T ss_pred cccccccCC----------CcE-E----EEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHH
Confidence 999854421 111 0 357888887652 1 333345678999999998543
No 66
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=1.8e-09 Score=81.43 Aligned_cols=68 Identities=15% Similarity=0.321 Sum_probs=52.9
Q ss_pred cccccccccCccccCC-CCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCC
Q 017657 171 HYHPKCDVCKHFIPSN-HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~-~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~ 249 (368)
++.++|..|+++|.+. +..++.+.++ +||+.||+|..|++.|. +..|+ ..+|++||..||.+ +..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~c~~~--~~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEER----------QWHNDCFNCKKCSLSLV-GRGFL-TERDDILCPDCGKD--ISG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSC----------EECTTTCBCSSSCCBCT-TSCCE-ECSSSEECHHHHHT--CCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCc----------ccCcccCEeccCCCcCC-CCccE-eECCEEEChhHcCc--ccC
Confidence 4678999999999961 1246776654 46999999999999984 66776 47999999999987 344
Q ss_pred CCC
Q 017657 250 NEC 252 (368)
Q Consensus 250 ~~C 252 (368)
+++
T Consensus 69 p~~ 71 (72)
T 1x4l_A 69 PSS 71 (72)
T ss_dssp SSC
T ss_pred CCC
Confidence 443
No 67
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=2.8e-09 Score=81.29 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=54.8
Q ss_pred ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCccccc-chhhhhccC
Q 017657 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL-ECLDSAIMD 248 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~-~C~~~~v~~ 248 (368)
..+.++|..|+++|.... .+.+.++ .||+.||+|..|++.|. +..|+ ..++++||. .||.+ .+
T Consensus 6 ~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~cy~~--~f 69 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE--KVSSLGK----------DWHKFCLKCERCSKTLT-PGGHA-EHDGKPFCHKPCYAT--LF 69 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT--EEEETTE----------EEETTTCBCSSSCCBCC-TTSCE-EETTEEECTTTHHHH--HS
T ss_pred CCCCCCCcCCCCEeECCe--EEEECCe----------EeeCCCCCCCCCCCccC-CCceE-eECCEEecchHHHHH--hc
Confidence 456889999999999532 5777664 46999999999999995 55676 469999999 79988 46
Q ss_pred CCCCCc
Q 017657 249 TNECQP 254 (368)
Q Consensus 249 ~~~C~~ 254 (368)
.++|.+
T Consensus 70 ~~kc~g 75 (76)
T 2cu8_A 70 GSGPSS 75 (76)
T ss_dssp CSSCSC
T ss_pred ccccCC
Confidence 677753
No 68
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.84 E-value=1.9e-09 Score=88.88 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=72.0
Q ss_pred cccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCC-CCceEEccCCcccccchhhhhccCCCC
Q 017657 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQ-DTAYVALDDGRKLCLECLDSAIMDTNE 251 (368)
Q Consensus 173 ~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~-~~~f~~~~dg~~~C~~C~~~~v~~~~~ 251 (368)
.++|..|+++|.+. .++.+.++ .||+.||+|..|++.|.. +..|+ ..+|++||..||.+ .+.+.
T Consensus 3 ~~~C~~C~~~I~~~--~~~~a~~~----------~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~~y~~--~f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR--YFLKAIDQ----------YWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLR--LGGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSS--EEEECSSS----------EECTTTCCCSSSCSCCCCSSSCCC-CBTTBCCCHHHHHH--HHTSC
T ss_pred CCCCcCCCCeeCCc--EEEEECch----------hHHHhcCcccccCCchhcCCCeeE-EECCeeechHHHHH--HhCcc
Confidence 47899999999853 25666654 479999999999999863 45776 57999999999998 45778
Q ss_pred CCcchHhHHHHHHHhccccccccchhhHhHHHHHhhhcCCCCCCCCCcccCCcccccceee
Q 017657 252 CQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEKNGYYHMPETRGLCLSEEQTV 312 (368)
Q Consensus 252 C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~~g~~~~~~~~G~~~~E~~~~ 312 (368)
|..|.. +..+. + .........|...+|..||..++.
T Consensus 68 c~~c~~---------~~~~~-----------~-----~~~~~~g~~f~~~~~~~~C~~~~~ 103 (114)
T 1j2o_A 68 GHMGSG---------GDVMV-----------V-----GEPTLMGGEFGDEDERLITRLENT 103 (114)
T ss_dssp CSSCBS---------CSCCC-----------S-----SCSSTTSSBCCCSSSCCCEEEECT
T ss_pred cCcCCC---------CceeE-----------c-----CCccCCCCeeEEcCCEeecchhhh
Confidence 887751 11111 0 112222336779999999998875
No 69
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.83 E-value=2.3e-09 Score=81.72 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=55.0
Q ss_pred ccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCccccc-chhhhhccCCCCC
Q 017657 174 PKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL-ECLDSAIMDTNEC 252 (368)
Q Consensus 174 p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~-~C~~~~v~~~~~C 252 (368)
|+|..|+++|... ..+.+.++ .||..||+|..|++.|.. ..|+ ..+|++||. .||.+ .+.++|
T Consensus 1 p~C~~C~~~I~~~--~~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~g~~yC~~~cy~~--~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFA--ERVTSLGK----------DWHRPCLKCEKCGKTLTS-GGHA-EHEGKPYCNHPCYSA--MFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGG--GEEEETTE----------EEETTTCBCTTTCCBCCT-TTEE-EETTEEEETTTHHHH--HSSCCC
T ss_pred CcCCCCCCEEECc--eEEEECCc----------cccCCCCCccccCccCCC-CceE-CcCCeEeeCHHHHHH--HhCccC
Confidence 6899999999843 25666654 469999999999999854 4676 469999999 69998 578899
Q ss_pred CcchH
Q 017657 253 QPLYL 257 (368)
Q Consensus 253 ~~c~~ 257 (368)
..|..
T Consensus 65 ~~C~~ 69 (76)
T 1iml_A 65 FGRGG 69 (76)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 99873
No 70
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.83 E-value=2.8e-09 Score=80.24 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=51.9
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhcc
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~ 247 (368)
++.++|..|+++|.+.. .++.+.++ .||..||+|..|++.| .+..|+ ..++++||..||.+++.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDR----------VFHVGCFVCSTCRAQL-RGQHFY-AVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSS----------EECTTTCBCSSSCCBC-TTSCEE-ESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCC----------eEcccCCcccccCCcC-CcCcCE-eeCCeEECHHHHHHHHc
Confidence 46889999999998631 35667654 4699999999999999 577787 46999999999998654
No 71
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.83 E-value=1.1e-09 Score=91.58 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=57.9
Q ss_pred ccccccc--cccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhh
Q 017657 168 YREHYHP--KCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (368)
Q Consensus 168 y~~~f~p--~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~ 245 (368)
|.++|++ +|..|+++|.+.. .++.+.+ ..||..||+|..|++.|..+..|+ ..++.+||..||.++
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~----------~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKD----------KVYHLECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSS----------CCCCTTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECC----------cccccccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHH
Confidence 5678888 9999999998632 3455554 357999999999999997677887 469999999999874
Q ss_pred ccCCCCCCcch
Q 017657 246 IMDTNECQPLY 256 (368)
Q Consensus 246 v~~~~~C~~c~ 256 (368)
..+.|..+.
T Consensus 69 --~~~~~~~~~ 77 (123)
T 2l3k_A 69 --TKINGGSGG 77 (123)
T ss_dssp --HHHHTCCCC
T ss_pred --hccccCCCC
Confidence 344554433
No 72
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.80 E-value=2.5e-09 Score=79.26 Aligned_cols=61 Identities=18% Similarity=0.395 Sum_probs=49.0
Q ss_pred ccccccccCccccCCCCcceEEccccccccccCCCCcc--CCCCccCCCCCcCCCCCceEEccCCcccc-cchhhhh
Q 017657 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEH--DGTPRCCSCERMEPQDTAYVALDDGRKLC-LECLDSA 245 (368)
Q Consensus 172 f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H--~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C-~~C~~~~ 245 (368)
|+++|..|+++|.+. +..+.+.++ +|| +.||+|..|++.| .+..|+ ..+|++|| ..|+.++
T Consensus 1 fa~~C~~C~~~I~~~-~~~v~a~~~----------~wH~~~~CF~C~~C~~~L-~~~~f~-~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPE-VQRVTYNNF----------SWHASTECFLCSCCSKCL-IGQKFM-PVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTT-SCEEEETTE----------EEETTTTTSBCTTTCCBC-TTSCCE-EETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccC-ceEEEECCC----------ccCCCCCCEECCCCCCcC-CCCceE-EECCEEecCHHHhhhh
Confidence 578999999999953 136777764 469 9999999999998 466777 46999999 9999763
No 73
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.79 E-value=2.1e-09 Score=79.68 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=49.7
Q ss_pred ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhh
Q 017657 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~ 245 (368)
+++.++|..|+++|.+ ..+.+.++ .||+.||+|..|++.|. +..|+ ..+|++||..||.++
T Consensus 2 ~~~~~~C~~C~~~I~~---~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 2 SMGVPICGACRRPIEG---RVVNAMGK----------QWHVEHFVCAKCEKPFL-GHRHY-ERKGLAYCETHYNQL 62 (66)
T ss_dssp CCCCCEETTTTEECCS---CEECCTTS----------BEETTTCBCTTTCCBCS-SSCCE-EETTEEECHHHHHHH
T ss_pred CcCCCCCcccCCEecc---eEEEECcc----------ccccCcCEECCCCCCCC-CCceE-eECCcEECHHHHHHH
Confidence 4678999999999984 35666553 57999999999999984 56676 469999999999874
No 74
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.79 E-value=2.2e-09 Score=82.90 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=48.9
Q ss_pred ccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCC
Q 017657 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNE 251 (368)
Q Consensus 172 f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~ 251 (368)
..++|..|+++|.... .+.+.++ .||+.||+|..|++.|. +..|+ ..++++||..||.+ .+.++
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGR----------SFHRCCFLCMVCRKNLD-STTVA-IHDAEVYCKSCYGK--KYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTE----------EEESSSEECSSSCCEEC-SSCCE-EETTEEECSHHHHH--HCC--
T ss_pred CCCcCcCcCccccCce--eEEeCCc----------ccccccCccCCCCCCCC-CCCeE-eeCCEEECHHHHHH--HhCCc
Confidence 4689999999997533 5777664 46999999999999985 44576 45999999999998 57889
Q ss_pred CCcch
Q 017657 252 CQPLY 256 (368)
Q Consensus 252 C~~c~ 256 (368)
|.+|.
T Consensus 70 c~gcg 74 (81)
T 1a7i_A 70 GYGYG 74 (81)
T ss_dssp -----
T ss_pred ccccC
Confidence 98886
No 75
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.78 E-value=3e-09 Score=79.69 Aligned_cols=65 Identities=17% Similarity=0.371 Sum_probs=51.7
Q ss_pred ccccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhh
Q 017657 168 YREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (368)
Q Consensus 168 y~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~ 245 (368)
|..++.++|..|+++|.+.+ .++.+.+. .||..||+|..|++.|..+ .|+ ..+|++||..||.++
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFY-EFEGRKYCEHDFQML 70 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTE----------EEETTTSSCTTTCCCCGGG-CCE-EETTEEECHHHHHHH
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcC----------eeCcCCCcccCCCCCCCCC-CeE-eECCeEeCHHHHHHh
Confidence 34578899999999999643 34566654 4699999999999998655 666 468999999999874
No 76
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.78 E-value=3.6e-09 Score=80.62 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=52.4
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCC
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~ 250 (368)
.+.++|..|+++|.+. +.++.+.++ .||..||+|..|++.|..+ .|+ ..+|++||..||.+ .+.+
T Consensus 9 ~~~~~C~~C~~~I~~~-~~~~~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~--~f~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPA-EKIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFY-EFEGRKYCEHDFQM--LFAP 73 (77)
T ss_dssp CCCCBCSSSCCBCCST-TTCEEETTE----------EECTTTCCCTTTCCCCGGG-CSE-EETTEEECHHHHHH--HCCC
T ss_pred CCCCCchhcCCccCCC-ceEEEeCcc----------EeccccCeECCCCCCCCCC-CeE-eECCeEeCHHHHHH--Hhhc
Confidence 4678999999999753 235677765 4699999999999998554 566 46999999999988 4566
Q ss_pred CCC
Q 017657 251 ECQ 253 (368)
Q Consensus 251 ~C~ 253 (368)
.|.
T Consensus 74 ~C~ 76 (77)
T 1g47_A 74 CWI 76 (77)
T ss_dssp C--
T ss_pred ccC
Confidence 664
No 77
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.73 E-value=8.9e-09 Score=77.08 Aligned_cols=60 Identities=25% Similarity=0.512 Sum_probs=49.3
Q ss_pred ccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhc
Q 017657 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (368)
Q Consensus 172 f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v 246 (368)
+.++|..|+++|.++ ++.+.++ .||+.||+|..|++.|.. ..|+ ..+|++||..||.++.
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~f~-~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNN----------SWHPECFRCDLCQEVLAD-IGFV-KNAGRHLCRPCHNREK 63 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTE----------EECTTTSBCSSSCCBCSS-SCCE-EETTEEECHHHHHHHH
T ss_pred CCCcCccCCCEecce---EEEECcc----------cccccCCEeCCCCCcCCC-CccE-eECCeEECHHHhhhhc
Confidence 568999999999853 6777765 369999999999999854 4666 4699999999998853
No 78
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.73 E-value=1e-08 Score=79.22 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=51.5
Q ss_pred cccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCC
Q 017657 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNEC 252 (368)
Q Consensus 173 ~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C 252 (368)
.++|..|+++|... .++.+.++ .||+.||+|..|++.|. + .|+ ..+|++||..||.+ .+.+.|
T Consensus 15 ~~~C~~C~~~I~~~--~~v~a~~~----------~wH~~CF~C~~C~~~L~-~-~~~-~~~g~~yC~~~y~~--~fg~~C 77 (80)
T 2dj7_A 15 PSHCAGCKEEIKHG--QSLLALDK----------QWHVSCFKCQTCSVILT-G-EYI-SKDGVPYCESDYHA--QFGSGP 77 (80)
T ss_dssp CSCCTTTCCCCSSS--CCEEETTE----------EECTTTCBCSSSCCBCS-S-CCE-EETTEEECTTHHHH--HTTCCS
T ss_pred CCCCcCcCCeeCCC--eEEEECCc----------ccccccCCcCcCCCCcC-C-CeE-EECCEEECHHHHHH--HcCCCC
Confidence 57899999999853 26777764 46999999999999885 4 576 56999999999998 466777
Q ss_pred C
Q 017657 253 Q 253 (368)
Q Consensus 253 ~ 253 (368)
.
T Consensus 78 ~ 78 (80)
T 2dj7_A 78 S 78 (80)
T ss_dssp T
T ss_pred C
Confidence 5
No 79
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.68 E-value=1e-08 Score=85.86 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=51.2
Q ss_pred ccccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCC-CCCceEEccCCcccccchhhhh
Q 017657 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEP-QDTAYVALDDGRKLCLECLDSA 245 (368)
Q Consensus 170 ~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~-~~~~f~~~~dg~~~C~~C~~~~ 245 (368)
..+.++|..|+++|.+. .++.+.++ .||..||+|..|++.|. .+..|+ ..+|++||..||.++
T Consensus 58 ~~~~~~C~~C~~~I~~~--~~v~a~~~----------~wH~~CF~C~~C~~~L~~~g~~f~-~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADR--FLLYAMDS----------YWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRL 121 (123)
T ss_dssp CSSCSBBSSSSSBCCSS--SEEEETTE----------EEETTTSBCTTTCCBGGGTTCCCB-CSSSCCBCHHHHHHH
T ss_pred CccCCcCcCCCCCcCCc--EEEEeCCc----------EEcccccCcCcCCCcccccCCceE-EECCEEeCHHHhhhh
Confidence 45678999999999963 25777764 46999999999999985 356776 579999999999874
No 80
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.68 E-value=1.4e-08 Score=80.22 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=53.8
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCC
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~ 250 (368)
...++|..|+++|.+.. .+.+.++ .||..||+|..|++.|..+ .|+ ..++++||..||.+ .+.+
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~--~f~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQQ----------VFHISCFRCSYCNNKLSLG-TYA-SLHGRIYCKPHFNQ--LFKS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSSS----------EEETTTCBCTTTCCBCCTT-TCC-CSSSCCCCHHHHHH--HSCC
T ss_pred CCCCcCccCCCccCCce--eEEECCC----------EECCCCCeeCCCCCCCCCC-CcE-eECCEEECHHHHHH--HhCC
Confidence 35789999999998642 5665553 4799999999999998544 466 57999999999998 4677
Q ss_pred CCCcc
Q 017657 251 ECQPL 255 (368)
Q Consensus 251 ~C~~c 255 (368)
+|..+
T Consensus 77 kc~~~ 81 (91)
T 2d8y_A 77 KGNYD 81 (91)
T ss_dssp CSCCC
T ss_pred CcCcc
Confidence 77643
No 81
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.68 E-value=1.6e-08 Score=77.91 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=49.9
Q ss_pred cccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCC
Q 017657 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (368)
Q Consensus 171 ~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~ 250 (368)
.+.++|..|+++|.+. .+.+.++ .||+.||+|..|++.|. +..| ..+|++||..||.+ .+++
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~f--~~~g~~yC~~cy~~--~f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKND----------PYHPDHFNCANCGKELT-ADAR--ELKGELYCLPCHDK--MGVS 74 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSS----------CCCTTTSBCSSSCCBCC-TTCE--EETTEEECHHHHHT--TSCC
T ss_pred cCCCCCccCCCEecce---EEEECcc----------eeCCCCCEeCCCCCccC-CCCE--eECCEEeCHHHHHH--hCCC
Confidence 4678999999999953 4666653 57999999999999985 4444 46999999999998 4455
Q ss_pred CC
Q 017657 251 EC 252 (368)
Q Consensus 251 ~C 252 (368)
.+
T Consensus 75 ~~ 76 (79)
T 2cor_A 75 GP 76 (79)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 82
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.64 E-value=1.8e-08 Score=79.17 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=49.9
Q ss_pred ccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCC
Q 017657 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNE 251 (368)
Q Consensus 172 f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~ 251 (368)
..++|..|+++|.+. ++.+.++ .||..||+|..|++.|. +..|+. .++.+||..||.++ +.++
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~~--f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDK----------YRHPECFVCADCNLNLK-QKGYFF-VEGELYCETHARAR--TSGP 86 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSC----------EECTTTCCCSSSCCCTT-TSCCEE-ETTEEECHHHHHHH--SSSC
T ss_pred cCCCcccCCCEeccc---EEEECCc----------eECccCCEecCCCCCCC-CCCeEe-ECCEEECHHHHHHH--hCCC
Confidence 367899999999963 5666653 46999999999999985 445664 59999999999884 4454
Q ss_pred C
Q 017657 252 C 252 (368)
Q Consensus 252 C 252 (368)
+
T Consensus 87 ~ 87 (89)
T 1x64_A 87 S 87 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.59 E-value=3.6e-08 Score=76.42 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=47.1
Q ss_pred cccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEE-ccCCcccccchhhhhc
Q 017657 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVA-LDDGRKLCLECLDSAI 246 (368)
Q Consensus 173 ~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~-~~dg~~~C~~C~~~~v 246 (368)
.++|..|+++|.... .+.+.++ .||..||+|..|++.|. +..|+. ..||++||..||.++.
T Consensus 15 ~~~C~~C~~~I~~~e--~v~a~~~----------~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLCVNGH----------FFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCCBTTB----------CCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCcccCCCcccce--EEEECCC----------eeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhh
Confidence 578999999997532 4555543 57999999999999984 455653 3699999999998743
No 84
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.59 E-value=1e-08 Score=78.80 Aligned_cols=59 Identities=19% Similarity=0.383 Sum_probs=48.4
Q ss_pred cccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhc
Q 017657 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (368)
Q Consensus 173 ~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v 246 (368)
.++|..|+++|.++ ++.+.++ .||..||+|..|++.|. +..|+ ..++++||..||.+++
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDR----------HRHPECYVCTDCGTNLK-QKGHF-FVEDQIYCEKHARERV 73 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSC----------EECTTTTSCSSSCCCHH-HHCCE-ESSSCEECHHHHHHHH
T ss_pred CCccccCCCCccCc---EEEECcc----------eeCcCcCeeCCCCCCCC-CCCeE-eECCEEECHHHHHHHh
Confidence 67999999999963 5777654 46999999999999884 55676 4699999999998853
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.48 E-value=2.7e-05 Score=49.17 Aligned_cols=29 Identities=41% Similarity=0.930 Sum_probs=27.0
Q ss_pred CCccccCCcccccCceEeecCceecCCCc
Q 017657 113 YRICAGCNNEIGHGRFLNCLDVFWHPECF 141 (368)
Q Consensus 113 ~~~C~~C~~~I~~g~~v~a~g~~wH~~CF 141 (368)
.+.|..|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999999999999999999998
No 86
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=93.43 E-value=0.06 Score=41.14 Aligned_cols=46 Identities=46% Similarity=0.526 Sum_probs=32.3
Q ss_pred CCcchHHHHHHHhhhhhhhccCC--C--cc--------CCcccccchHHHHHHHHhhc
Q 017657 42 EQENEDIDRAIALSLLEENQKGE--N--VI--------DKESQVEEDEQLARAIQESL 87 (368)
Q Consensus 42 ~~~~e~~~~aia~sl~e~~~~~~--~--~~--------~~~~~~~edE~lar~lqes~ 87 (368)
+.+.|||.+||++||.|-...+. . +. ......++|++|..+|..|+
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASL 66 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESL 66 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Confidence 56789999999999987643321 1 00 11123678999999999986
No 87
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=82.65 E-value=0.63 Score=27.46 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=18.6
Q ss_pred CcchHHHHHHHhhhhhhhccCCC
Q 017657 43 QENEDIDRAIALSLLEENQKGEN 65 (368)
Q Consensus 43 ~~~e~~~~aia~sl~e~~~~~~~ 65 (368)
++.|++.-|||+|++|.+.+.++
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~~ 24 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXXX 24 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhccc
Confidence 46788999999999988776654
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=81.60 E-value=0.35 Score=39.03 Aligned_cols=88 Identities=20% Similarity=0.437 Sum_probs=54.5
Q ss_pred ccCCccccccccccc--ccccccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcCCC----CCceEE
Q 017657 157 TSENRPYHKSCYREH--YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQ----DTAYVA 230 (368)
Q Consensus 157 ~~dg~~yC~~cy~~~--f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~----~~~f~~ 230 (368)
..=|..||..|..+. ....|..|.+.+.... +.. . | .-..-..|..|...+.. +...+.
T Consensus 30 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--l~~-l---~---------i~~~~~~C~iC~~~~~~~~~~~~~~~~ 94 (133)
T 4ap4_A 30 TECGHVFCSQCLRDSLKNANTCPTCRKKINHKR--YHP-I---Y---------IGSGTVSCPICMDGYSEIVQNGRLIVS 94 (133)
T ss_dssp ETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC--EEE-C---B---------CSSSSCBCTTTCCBHHHHHHTTCCEEE
T ss_pred cCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc--ccc-c---c---------cCCCCCCCCCCCCccccccccCcceEe
Confidence 345667777776543 2458999999887643 211 1 1 12334678888765421 222245
Q ss_pred ccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 231 LDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 231 ~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
..=|..+|..|..+.......|--|..+|
T Consensus 95 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 95 TECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp ETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 56789999999987666666777777433
No 89
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=80.52 E-value=0.65 Score=31.79 Aligned_cols=39 Identities=41% Similarity=0.538 Sum_probs=28.4
Q ss_pred CCcchHHHHHHHhhhhhhhccCCCccCCcccccchHHHHHHHHhhccCCC
Q 017657 42 EQENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLNLES 91 (368)
Q Consensus 42 ~~~~e~~~~aia~sl~e~~~~~~~~~~~~~~~~edE~lar~lqes~~~~s 91 (368)
+.|.||+.+|+|+|..|.+. .++.-.|.|+||-|+.-.+
T Consensus 4 dEDEedlqrALalSRQE~dm-----------EDeeadLrrAiqLSmQGss 42 (52)
T 2klz_A 4 DEDEEDLQRALALSRQEIDM-----------EDEEADLRRAIQLSMQGSS 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------SSSHHHHHHHHHHHHTTCC
T ss_pred ccchHHHHHHHHHHHHHhcc-----------chhHHHHHHHHHHHhhccc
Confidence 56778999999999765432 2234489999999976655
No 90
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=78.84 E-value=0.39 Score=29.72 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=19.6
Q ss_pred cccccccCccccCCCCcceEEccccccccccCCCCccCCCC
Q 017657 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTP 213 (368)
Q Consensus 173 ~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf 213 (368)
.++|..|++.+-.. ..+.+.+. .||..||
T Consensus 3 ~~~C~~C~k~Vy~~--Ek~~~~g~----------~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT--EKVNCLDK----------FWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG--GCCCSSSS----------CCCGGGC
T ss_pred CCcCCccCCEEecc--eeEEECCe----------EecccCC
Confidence 46899999988753 23445553 3588887
No 91
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.73 E-value=4.5 Score=32.18 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=23.9
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccccccccccCcccc
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIP 184 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~ 184 (368)
+.|..|...+........=|..||..|..+.+...|..|...+.
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 44555544443321111456667777766655556777766654
No 92
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=66.11 E-value=2.3 Score=28.02 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=26.6
Q ss_pred CcchHHHHHHHhhhhhhhccCCCccCCcccccchHHHHHHHHhhcc
Q 017657 43 QENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLN 88 (368)
Q Consensus 43 ~~~e~~~~aia~sl~e~~~~~~~~~~~~~~~~edE~lar~lqes~~ 88 (368)
.+.|.+.-|+.+|-.|.+.... .+..+||-+.++|.+|++
T Consensus 5 tEEEq~ALA~rmSeQEA~~vn~------~eE~EdellrKAIaESLn 44 (45)
T 3a1q_C 5 SEEEQFALALKMSEQEAREVNN------QEEKEEELLRKAIAESLN 44 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHhhh------HHHHHHHHHHHHHHHHhc
Confidence 4566776566665555444332 367789999999999875
No 93
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=65.33 E-value=2.7 Score=27.77 Aligned_cols=42 Identities=36% Similarity=0.397 Sum_probs=26.6
Q ss_pred cchHHHHHHHhhhhhhhccCCCccCCcccccchHHHHHHHHhhccCCC
Q 017657 44 ENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLNLES 91 (368)
Q Consensus 44 ~~e~~~~aia~sl~e~~~~~~~~~~~~~~~~edE~lar~lqes~~~~s 91 (368)
+.|.+.-|+.+|-.|.+... ..+.++|+-|.++|.+|++.-.
T Consensus 3 EEEq~ALA~kmSeQEA~~vn------~~eE~E~~llrKAIaESLn~~~ 44 (46)
T 2rr9_C 3 EEEQFALALKMSEQEAREVN------SQEEEEEELLRKAIAESLNSCR 44 (46)
T ss_dssp SHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhHHHHHHhh------hHHHHHHHHHHHHHHHHHHhcc
Confidence 45666555555544433322 2367788899999999987644
No 94
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.37 E-value=3.6 Score=29.61 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=26.6
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCccccCC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPSN 186 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--~p~C~~C~~~I~~~ 186 (368)
+.|..|...+.+......=|..||..|..+.+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 44555555544322222456667777765443 45788888887653
No 95
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.32 E-value=8.1 Score=26.41 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=24.4
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccccccccccCccccCC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSN 186 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~ 186 (368)
+.|..|...+... ....=|..||..|..+ ....|..|...+...
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 3455555444332 2223455667666554 356788888777643
No 96
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.83 E-value=5.8 Score=28.77 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=32.6
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|-..+........+.=|..+|..|..+.+.....|--|+.+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 56888876665445555566788888889887766667787777443
No 97
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.35 E-value=4.3 Score=28.99 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=17.3
Q ss_pred cCCcccccccccccc-----cccccccCccccC
Q 017657 158 SENRPYHKSCYREHY-----HPKCDVCKHFIPS 185 (368)
Q Consensus 158 ~dg~~yC~~cy~~~f-----~p~C~~C~~~I~~ 185 (368)
.=|..||..|..+.+ ...|..|...|..
T Consensus 37 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 37 DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345567777765543 2367777777764
No 98
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=58.39 E-value=4.6 Score=35.36 Aligned_cols=24 Identities=0% Similarity=0.018 Sum_probs=18.4
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|...++-.-+....++|||++|
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGH 146 (202)
T 2w15_A 123 VGVVRDHSKNNLWVAVTMAHELGH 146 (202)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHH
T ss_pred ceEEecCCCchhHHHHHHHHHHhh
Confidence 466666665556788999999998
No 99
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=58.06 E-value=2.2 Score=33.79 Aligned_cols=15 Identities=13% Similarity=0.002 Sum_probs=11.6
Q ss_pred cHHHHHHHHhhhccc
Q 017657 353 PRFVICLALSNVCTR 367 (368)
Q Consensus 353 pr~~~~~ilahe~~h 367 (368)
..-=-.+|||||++|
T Consensus 79 ~~~El~aVlaHElgH 93 (107)
T 3cqb_A 79 TRDEAEAVLAHEVSH 93 (107)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 344467899999998
No 100
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=57.42 E-value=11 Score=25.09 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=30.5
Q ss_pred CccCCCCCcCCCCCceEEcc-CCcccccchhhhhccCCCCCCcchHh
Q 017657 213 PRCCSCERMEPQDTAYVALD-DGRKLCLECLDSAIMDTNECQPLYLD 258 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~-dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (368)
..|..|-..+..+.....+. =|..+|..|..+.+.....|--|+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 45777776665544444454 67888888988766666677777643
No 101
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=57.37 E-value=4.9 Score=35.22 Aligned_cols=24 Identities=4% Similarity=0.020 Sum_probs=17.5
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|...++-.-+....++|||++|
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGH 146 (202)
T 1atl_A 123 IGIVQDHSPINLLMGVTMAHELGH 146 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHH
T ss_pred CceEeccCCcceeeEEEehhhhcc
Confidence 455555554456688999999998
No 102
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=57.01 E-value=6.7 Score=28.42 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCcccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccccC
Q 017657 139 ECFCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 139 ~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
+-|.|..|...+.+ .....-|..||..|..+.+ ...|..|...+..
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45778888777765 3344678889988876543 3457777776653
No 103
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=55.84 E-value=5.4 Score=34.76 Aligned_cols=24 Identities=0% Similarity=0.059 Sum_probs=17.9
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|...++-.-+....++|||++|
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH 145 (197)
T 1qua_A 122 VGLIQDHSAIPLLMAVTMAHELGH 145 (197)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHH
T ss_pred cceEeccCCcchHHHHHHHHHHHH
Confidence 456666664456688999999998
No 104
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.62 E-value=3.9 Score=28.81 Aligned_cols=44 Identities=25% Similarity=0.576 Sum_probs=24.7
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccccC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
+.|..|...+.+. ....=|..||..|..+.+ ...|..|...|..
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3444444443321 112445677888876544 3568888877764
No 105
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=55.24 E-value=5.2 Score=35.31 Aligned_cols=23 Identities=4% Similarity=-0.110 Sum_probs=17.7
Q ss_pred EEEEecCCcHHHHHHHHhhhccc
Q 017657 345 AILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~~~~ilahe~~h 367 (368)
+|...++..-+.+..++|||++|
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH 143 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGH 143 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHH
T ss_pred eEEecCCCChhHHHHHHHHHHHH
Confidence 55556666666778999999998
No 106
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=54.96 E-value=5.7 Score=34.87 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=17.6
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|...++-.-+....++|||++|
T Consensus 125 ~gi~~~~~~~~~~~a~~~AHElGH 148 (203)
T 1kuf_A 125 VAVVKDHSSKVFMVAVTMTHELGH 148 (203)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHH
T ss_pred eeEEecCCCcchhhHHHHHHHhhh
Confidence 455555654456788999999998
No 107
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=54.64 E-value=5.8 Score=34.75 Aligned_cols=24 Identities=4% Similarity=0.178 Sum_probs=17.8
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|...++-.-+.+..++|||++|
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH 145 (202)
T 1yp1_A 122 AGIIQDFSAIPLLMAVVMAHELGH 145 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHH
T ss_pred CceEeecCCchhHHHHHHHHHHHH
Confidence 456666654456678999999998
No 108
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=53.45 E-value=6.3 Score=34.35 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=17.2
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|...++-.-+.+..++|||++|
T Consensus 120 ~gi~~~~~~~~~~~a~~~AHElGH 143 (197)
T 1bud_A 120 VGVIQDHSSVNRLVAITLAHEMAH 143 (197)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHH
T ss_pred cceEeecCCchhHHHHHHHHHHhh
Confidence 455555554445678999999998
No 109
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.82 E-value=22 Score=27.88 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCCccccCCcccccCceEeec--CceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccccCCCCc
Q 017657 112 GYRICAGCNNEIGHGRFLNCL--DVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~--g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~ 189 (368)
....|..|+..=...+.|... ++.||+.|..=.. . ....+.-+|..|. .|.+|++.-.++ .
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-----~----~~~~~~W~C~~C~------~C~~C~~~~~~~--~ 68 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-----T----PLKRAGWQCPECK------VCQNCKQSGEDS--K 68 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-----C----TTTSTTCCCTTTC------CCTTTCCCSCCT--T
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-----c----cccccCccCCcCC------cccccCccCCCC--C
Confidence 456788898753112335443 5889998864321 1 1134567888874 688998775432 2
Q ss_pred ceEEccccccccccCCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhh
Q 017657 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (368)
Q Consensus 190 ~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~ 244 (368)
++.-. .|+..||..|..- ++ .. +..+.++|..|...
T Consensus 69 ll~Cd--------~C~~~yH~~Cl~p-----pl--~~----~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 69 MLVCD--------TCDKGYHTFCLQP-----VM--KS----VPTNGWKCKNCRIC 104 (111)
T ss_dssp EEECS--------SSCCEEEGGGSSS-----CC--SS----CCSSCCCCHHHHCC
T ss_pred eeECC--------CCCcHHhHHhcCC-----cc--cc----CCCCCcCCcCCcCc
Confidence 33221 3677778775532 11 11 23678999999653
No 110
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=50.12 E-value=6.2 Score=30.18 Aligned_cols=43 Identities=16% Similarity=0.396 Sum_probs=20.1
Q ss_pred ccCCCCCCCCCceeeccCCcccccccccccc--cccccccCcccc
Q 017657 142 CCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIP 184 (368)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--~p~C~~C~~~I~ 184 (368)
.|..|...+.+......-|..||..|..+.+ ...|..|...+.
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 4444444443321112345566777754432 235556655554
No 111
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=49.85 E-value=9.9 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=15.3
Q ss_pred Cccccccccccccc----ccccccCcccc
Q 017657 160 NRPYHKSCYREHYH----PKCDVCKHFIP 184 (368)
Q Consensus 160 g~~yC~~cy~~~f~----p~C~~C~~~I~ 184 (368)
|..||..|..+.+. ..|..|...+.
T Consensus 35 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 35 GNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 56677777655432 46777777654
No 112
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.50 E-value=9 Score=27.84 Aligned_cols=44 Identities=18% Similarity=0.486 Sum_probs=22.7
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--------cccccccCccccC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--------HPKCDVCKHFIPS 185 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--------~p~C~~C~~~I~~ 185 (368)
+.|..|...+... ....=|..||..|..+.+ ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3444444444321 122345567777765432 3467777776654
No 113
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.44 E-value=8.1 Score=28.67 Aligned_cols=18 Identities=28% Similarity=0.835 Sum_probs=13.5
Q ss_pred CCCCCCccccCCcccccC
Q 017657 109 FPEGYRICAGCNNEIGHG 126 (368)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g 126 (368)
+......|+-|...|..+
T Consensus 11 y~~~i~~C~IC~~~i~~g 28 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQG 28 (74)
T ss_dssp CSSSSCBCSSSCCBCSSS
T ss_pred ccCCCCcCcchhhHcccC
Confidence 445678899999998533
No 114
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=48.16 E-value=7.8 Score=35.87 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=13.9
Q ss_pred cCC--cHHHHHHHHhhhccc
Q 017657 350 YGL--PRFVICLALSNVCTR 367 (368)
Q Consensus 350 ~gl--pr~~~~~ilahe~~h 367 (368)
||- |...+..++||||+|
T Consensus 179 ~g~~~~~~~~a~~~AHElGH 198 (288)
T 2i47_A 179 YGKTILTKEADLVTTHELGH 198 (288)
T ss_dssp TTEECCHHHHHHHHHHHHHH
T ss_pred cCcccchhhHHHHHHHHHHh
Confidence 763 444578999999998
No 115
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=47.83 E-value=7.6 Score=35.31 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=12.3
Q ss_pred CCCCccccCCcccccC
Q 017657 111 EGYRICAGCNNEIGHG 126 (368)
Q Consensus 111 ~~~~~C~~C~~~I~~g 126 (368)
.....|..|+..|..|
T Consensus 178 ~~i~~C~iC~~iv~~g 193 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG 193 (238)
T ss_dssp TTCCBCTTTCSBCSSC
T ss_pred CCCCcCcchhhHHhCC
Confidence 4578899999988543
No 116
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=46.71 E-value=9.6 Score=29.91 Aligned_cols=29 Identities=17% Similarity=0.497 Sum_probs=13.8
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccc
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYRE 170 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~ 170 (368)
|.|..|...+.. .....=|..||..|..+
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~ 44 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQS 44 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHH
Confidence 455555544432 12223455566666544
No 117
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=46.18 E-value=12 Score=24.86 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=28.9
Q ss_pred CccCCCCCcCCC-CCceEEccCCcccccchhhhhccCCCCCCcchH
Q 017657 213 PRCCSCERMEPQ-DTAYVALDDGRKLCLECLDSAIMDTNECQPLYL 257 (368)
Q Consensus 213 f~C~~C~r~l~~-~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~ 257 (368)
..|..|...+.. +...+.+.=|..+|..|..+.+.....|--|+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 51 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCC
Confidence 457777765532 233455667888888888876555566666663
No 118
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=46.06 E-value=8.5 Score=27.12 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=31.5
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHh
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (368)
..|..|-..+..+...+.+.=|..+|..|..+.+.....|--|+.+
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~ 60 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVD 60 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSB
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcc
Confidence 4688887655444555556678888999988765555667777733
No 119
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=46.00 E-value=7.8 Score=30.66 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=29.5
Q ss_pred cCCCCCCCCCceeeccCCcccccccccc---cccccccccCccccC
Q 017657 143 CHACHQPITDIEFSTSENRPYHKSCYRE---HYHPKCDVCKHFIPS 185 (368)
Q Consensus 143 C~~C~~~L~~~~f~~~dg~~yC~~cy~~---~f~p~C~~C~~~I~~ 185 (368)
|..|+.|+....-..-=+..+|-+|+.. .-...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6667777665444444556788888865 335689999999873
No 120
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=45.66 E-value=1.7 Score=31.90 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=31.6
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhHHHHHHHhccccccccchhhHhHHHHHhhhcCC
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGE 291 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e 291 (368)
.+|-.|+..| .| ....|.++|..|-.. -||...+|++|.+-..--..|+-+
T Consensus 11 L~CP~ck~~L----~~-~~~~g~LvC~~c~~~-----------------------YPI~dGIPvmL~~Ear~~~~~~~~ 61 (67)
T 2jny_A 11 LACPKDKGPL----RY-LESEQLLVNERLNLA-----------------------YRIDDGIPVLLIDEATEWTPNNLE 61 (67)
T ss_dssp CBCTTTCCBC----EE-ETTTTEEEETTTTEE-----------------------EEEETTEECCCSSCCEECCCCCCC
T ss_pred hCCCCCCCcC----eE-eCCCCEEEcCCCCcc-----------------------ccCCCCEeeeChhHhcCCchhhhh
Confidence 4677777655 22 234677888877432 578888999988733333345444
No 121
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.18 E-value=4.5 Score=33.17 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=17.0
Q ss_pred CCcchHHHHHHHhhhhhhhc
Q 017657 42 EQENEDIDRAIALSLLEENQ 61 (368)
Q Consensus 42 ~~~~e~~~~aia~sl~e~~~ 61 (368)
-.++.|+-+|||+||.|.++
T Consensus 93 ~d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 93 HDNKDDLQAAIALSLLESPK 112 (129)
Confidence 34688999999999998776
No 122
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=44.99 E-value=9.5 Score=37.55 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.0
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|..-+|--.+.+..++||||+|
T Consensus 124 ~gi~~d~~~~~~~~a~t~AHElGH 147 (419)
T 2dw0_A 124 TGIIQDYSEINLVVAVIMAHEMGH 147 (419)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHH
T ss_pred eEEEecCCCcchhhhhhHHHHHHH
Confidence 466666775567889999999998
No 123
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.85 E-value=28 Score=27.69 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=47.8
Q ss_pred ceEeec--CceecCCCcccCCCCCCCCCc-eeeccCCcccccccccccccccccccCccccCCCCcceEEcccccccccc
Q 017657 127 RFLNCL--DVFWHPECFCCHACHQPITDI-EFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKY 203 (368)
Q Consensus 127 ~~v~a~--g~~wH~~CF~C~~C~~~L~~~-~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I~~~~~~~i~~~~~pfw~~~y 203 (368)
+.|... ++.||+.|.. +... .-....+.-+|..| ..|.+|++.-.+. .++ .=. .
T Consensus 22 ~Li~C~~C~~~~H~~Cl~-------~~~~~~~~~~~~~W~C~~C------~~C~~C~~~~~~~--~ll-~Cd-------~ 78 (114)
T 2kwj_A 22 ELVSCADCGRSGHPTCLQ-------FTLNMTEAVKTYKWQCIEC------KSCILCGTSENDD--QLL-FCD-------D 78 (114)
T ss_dssp CCEECSSSCCEECTTTTT-------CCHHHHHHHHHTTCCCGGG------CCCTTTTCCTTTT--TEE-ECS-------S
T ss_pred CCeEeCCCCCccchhhCC-------ChhhhhhccCCCccCcccc------CccCcccccCCCC--ceE-EcC-------C
Confidence 555544 6788988752 1110 01123456678877 2688898864432 233 222 3
Q ss_pred CCCCccCCCCccCCCCCcCCCCCceEEccCCcccccchhhh
Q 017657 204 CPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (368)
Q Consensus 204 C~~h~H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~ 244 (368)
|+..||..|..= ++ . .+..|.++|..|...
T Consensus 79 C~~~yH~~Cl~p-----pl--~----~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 79 CDRGYHMYCLNP-----PV--A----EPPEGSWSCHLCWEL 108 (114)
T ss_dssp SCCEEETTTSSS-----CC--S----SCCSSCCCCHHHHHH
T ss_pred CCccccccccCC-----Cc--c----CCCCCCeECccccch
Confidence 777788776541 12 1 134678999999764
No 124
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.48 E-value=11 Score=29.22 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=7.3
Q ss_pred CCccccccccccc
Q 017657 159 ENRPYHKSCYREH 171 (368)
Q Consensus 159 dg~~yC~~cy~~~ 171 (368)
=|..||..|..+.
T Consensus 39 CgH~fC~~Ci~~~ 51 (112)
T 1jm7_A 39 CDHIFCKFCMLKL 51 (112)
T ss_dssp TSCCCCSHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3455677765543
No 125
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=44.05 E-value=14 Score=25.76 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCceeeccCCccccccccccc--ccccccccCcccc
Q 017657 142 CCHACHQPITDIEFSTSENRPYHKSCYREH--YHPKCDVCKHFIP 184 (368)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~--f~p~C~~C~~~I~ 184 (368)
.|..|...+........=|..||..|..+. ....|..|...+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 344554444432233334555666665442 2356777777765
No 126
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.67 E-value=8.9 Score=27.42 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=31.8
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
..|..|-..+........+.=+..+|..|..+.+.....|--|+.+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 46777776665555555556788889999887655556777777444
No 127
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=43.66 E-value=9.1 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccc
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYRE 170 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~ 170 (368)
+.|..|...+.+......-|..||..|..+
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~ 45 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVR 45 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHH
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHH
Confidence 566677666554222225566777777544
No 128
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=43.44 E-value=10 Score=37.43 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=18.2
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|...|+--.+.+..++||||+|
T Consensus 133 ~gi~~d~~~~~~~~a~t~AHElGH 156 (427)
T 2ero_A 133 AGIVQDHSKIHHLVAIAMAHEMGH 156 (427)
T ss_dssp EEEEECCBSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCchhHHHHHHHHHHHH
Confidence 456656654567888999999998
No 129
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=42.90 E-value=11 Score=37.30 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=19.0
Q ss_pred EEEEEecCCcHHHHHHHHhhhcccC
Q 017657 344 TAILILYGLPRFVICLALSNVCTRR 368 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h~ 368 (368)
.+|..-+|--.+.+..++||||+|.
T Consensus 126 ~gi~~d~~~~~~~~a~t~AHElGHn 150 (427)
T 2e3x_A 126 VGIVQEQGNRNFKTAVIMAHELSHN 150 (427)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCccceeeeehHHHHHHh
Confidence 4666667655577889999999994
No 130
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.42 E-value=8.3 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.485 Sum_probs=23.3
Q ss_pred ccCCCCCCCCCceeeccCCcccccccccccc--cccccccCccccCC
Q 017657 142 CCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPSN 186 (368)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--~p~C~~C~~~I~~~ 186 (368)
.|..|...+.. ....=|..||..|..+.+ ...|..|...|...
T Consensus 17 ~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 17 ECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 44444444433 222344556666655432 36788888877753
No 131
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.31 E-value=9.8 Score=27.61 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=21.6
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--------cccccccCccccC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--------HPKCDVCKHFIPS 185 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--------~p~C~~C~~~I~~ 185 (368)
+.|..|...+.... ...=|..||..|..+.+ ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34445544443321 22345566777765422 3456666666553
No 132
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=42.28 E-value=9.6 Score=27.47 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=6.1
Q ss_pred CCcccccccccc
Q 017657 159 ENRPYHKSCYRE 170 (368)
Q Consensus 159 dg~~yC~~cy~~ 170 (368)
=|..||..|..+
T Consensus 30 CgH~fC~~Ci~~ 41 (79)
T 2egp_A 30 CGHSLCRACITV 41 (79)
T ss_dssp SSCCCCHHHHSC
T ss_pred CCCHHHHHHHHH
Confidence 344556555543
No 133
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=41.82 E-value=8 Score=27.22 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=22.0
Q ss_pred ccCCCCCCCCCceeeccCCcccc-cccccc
Q 017657 142 CCHACHQPITDIEFSTSENRPYH-KSCYRE 170 (368)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~yC-~~cy~~ 170 (368)
.|..|+..++...-+.+||+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46788887777677788999998 677543
No 134
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=41.48 E-value=13 Score=28.80 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc--cccccccCccccC
Q 017657 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPS 185 (368)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--~p~C~~C~~~I~~ 185 (368)
+.-|.|..|...+.+ ......|..||+.|-.+.+ ...|..|+.++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 566888888777765 3334478888888854322 3455566555543
No 135
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.23 E-value=10 Score=27.66 Aligned_cols=42 Identities=26% Similarity=0.641 Sum_probs=22.0
Q ss_pred ccCCCCCCCCCceeeccCCcccccccccccc--cccccccCcccc
Q 017657 142 CCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIP 184 (368)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--~p~C~~C~~~I~ 184 (368)
.|..|...+.. .....=|..||..|..+.+ ...|..|...+.
T Consensus 17 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 17 RCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp BCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 44444444433 1223345567777765433 346777777765
No 136
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.14 E-value=21 Score=27.10 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=6.9
Q ss_pred CccccCCccc
Q 017657 114 RICAGCNNEI 123 (368)
Q Consensus 114 ~~C~~C~~~I 123 (368)
..|..|+.+|
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 4577777776
No 137
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=39.77 E-value=4.5 Score=34.58 Aligned_cols=89 Identities=13% Similarity=0.303 Sum_probs=44.5
Q ss_pred ccccccccc--cccc--cccccCccccCCCCcceEEccccccccccCCCCccCCCCccCCCCCcC-CC---CCceEEcc-
Q 017657 162 PYHKSCYRE--HYHP--KCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERME-PQ---DTAYVALD- 232 (368)
Q Consensus 162 ~yC~~cy~~--~f~p--~C~~C~~~I~~~~~~~i~~~~~pfw~~~yC~~h~H~~Cf~C~~C~r~l-~~---~~~f~~~~- 232 (368)
-+|..|... .|.+ .|..|...+.+.+ |.+...+ +..+=+...|..=+.|..|...+ .. ...+. ..
T Consensus 56 ~~C~~CH~g~~af~~~~~C~~CH~~~~~~~---i~~~~~~--~~V~F~H~~H~~~~~C~~CH~~v~~~~~~~~~~t-m~~ 129 (158)
T 3oue_A 56 KSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSV--GEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPAT-MAD 129 (158)
T ss_dssp CGGGGTBSSSSBCCTTSCHHHHCGGGCCCC---EEEEETT--EEEEECHHHHHTTCCGGGTBTTTBCSSTTSSCCC-HHH
T ss_pred CchhhhcCCcccCChhhhchhhhhcccccc---eEeecCC--CCccCChhHhCCCCChhhhccchhhcccCCCCcc-hhh
Confidence 467777652 2433 6888887544332 3332100 00000122354448899998633 11 11221 11
Q ss_pred -CCcccccchhhhhccCCC--CCCcch
Q 017657 233 -DGRKLCLECLDSAIMDTN--ECQPLY 256 (368)
Q Consensus 233 -dg~~~C~~C~~~~v~~~~--~C~~c~ 256 (368)
..-.+|..|++-...++. .|.-|+
T Consensus 130 ~~~gk~Cg~CH~gk~Af~~~~~C~~CH 156 (158)
T 3oue_A 130 MEKGKSCGVCHNGKDAFSVADDCVKCH 156 (158)
T ss_dssp HHTTCGGGGTBTTTSBCCSSSCGGGTE
T ss_pred hhccChhHhhcCCCccCCCcccHHHHc
Confidence 112599999974445543 788876
No 138
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=39.70 E-value=9.1 Score=32.19 Aligned_cols=43 Identities=12% Similarity=0.411 Sum_probs=21.2
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccc
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFI 183 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I 183 (368)
+.|..|...+........-|..||..|..+.+ ...|..|...|
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 45556655554422222456677777765432 22344444444
No 139
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=39.58 E-value=13 Score=26.81 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCccCCCCCcCCCCCceEEccCCcccccchhhhhccC-CCCCCcchHhH
Q 017657 212 TPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD-TNECQPLYLDI 259 (368)
Q Consensus 212 Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~-~~~C~~c~~~I 259 (368)
-|.|..|...+ .+.. .+.-|..||..|....+.. ...|--|..++
T Consensus 8 ~~~C~IC~~~~--~~Pv-~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELM--KDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCC--SSEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cCCCCCccccc--cCCE-EcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 37899999866 3343 4679999999999887654 56677777444
No 140
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=39.39 E-value=14 Score=27.56 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc--cccccccCcccc
Q 017657 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIP 184 (368)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f--~p~C~~C~~~I~ 184 (368)
+.-|.|..|...+.+ ......|..||+.|-.+.+ ...|..|+.++.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 456888888877765 3344578889988854432 345666665554
No 141
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.16 E-value=12 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.378 Sum_probs=16.5
Q ss_pred CCcccccccccccc-----cccccccCccccC
Q 017657 159 ENRPYHKSCYREHY-----HPKCDVCKHFIPS 185 (368)
Q Consensus 159 dg~~yC~~cy~~~f-----~p~C~~C~~~I~~ 185 (368)
=|..||..|..+.+ ...|..|...+..
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 37 CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45567777765443 2467777776654
No 142
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=38.70 E-value=11 Score=35.39 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=15.0
Q ss_pred EEEEecCCcHHHHHHHHhhhccc
Q 017657 345 AILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~~~~ilahe~~h 367 (368)
+|..-+| +.+..|+||||+|
T Consensus 134 gv~~d~~---~~~a~t~AHElGH 153 (316)
T 2rjp_A 134 AIVEDDG---LQSAFTAAHQLGH 153 (316)
T ss_dssp EEEECSS---TTHHHHHHHHHHH
T ss_pred ceEecCC---chHHHHHHHHHHh
Confidence 4444455 5788999999998
No 143
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=38.59 E-value=14 Score=30.09 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=5.1
Q ss_pred ccccCCccc
Q 017657 115 ICAGCNNEI 123 (368)
Q Consensus 115 ~C~~C~~~I 123 (368)
.|.-|...+
T Consensus 55 ~C~iC~~~~ 63 (138)
T 4ayc_A 55 QCIICSEYF 63 (138)
T ss_dssp BCTTTCSBC
T ss_pred CCcccCccc
Confidence 466666554
No 144
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.56 E-value=13 Score=27.28 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=31.8
Q ss_pred CccCCCCCcCCCCCc-eEEccCCcccccchhhhhccCC---CCCCcchHh
Q 017657 213 PRCCSCERMEPQDTA-YVALDDGRKLCLECLDSAIMDT---NECQPLYLD 258 (368)
Q Consensus 213 f~C~~C~r~l~~~~~-f~~~~dg~~~C~~C~~~~v~~~---~~C~~c~~~ 258 (368)
+.|..|...+..+.. .+.+.=|..+|..|..+.+... ..|-.|..+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 678888876643332 4556788999999998765543 567777743
No 145
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=38.11 E-value=11 Score=28.94 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=23.3
Q ss_pred cccCCCCCCCCCceeeccCCccccccccccccc---ccccccCccccC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYH---PKCDVCKHFIPS 185 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~---p~C~~C~~~I~~ 185 (368)
+.|..|...+........=|..||..|..+.+. ..|..|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 345555554443222134456677777654321 456666666543
No 146
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=37.97 E-value=17 Score=28.15 Aligned_cols=46 Identities=9% Similarity=0.019 Sum_probs=27.1
Q ss_pred CCCcccCCCCCCCCCceeeccCC-cccccccccccc--cccccccCcccc
Q 017657 138 PECFCCHACHQPITDIEFSTSEN-RPYHKSCYREHY--HPKCDVCKHFIP 184 (368)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg-~~yC~~cy~~~f--~p~C~~C~~~I~ 184 (368)
+.-|.|..|...+.+ ......| ..||+.|..+.+ ...|..|++++.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 455777777776665 3334455 888888854432 234555555544
No 147
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=37.19 E-value=10 Score=34.40 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=13.6
Q ss_pred cCC--cHHHHHHHHhhhccc
Q 017657 350 YGL--PRFVICLALSNVCTR 367 (368)
Q Consensus 350 ~gl--pr~~~~~ilahe~~h 367 (368)
||- |...+..++||||+|
T Consensus 173 ~g~~~~~~~~a~~~AHElGH 192 (257)
T 2ddf_A 173 YGKTILTKEADLVTTHELGH 192 (257)
T ss_dssp TTEECCHHHHHHHHHHHHHH
T ss_pred cCcccccceeeeeeeeehhh
Confidence 664 333478899999998
No 148
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.08 E-value=10 Score=27.28 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=28.5
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYL 257 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~ 257 (368)
..|..|-..+..+.....+.=+..+|..|..+.+.....|--|+.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~ 68 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCC
Confidence 467777765544544455566777888887765555556666653
No 149
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=36.56 E-value=14 Score=27.84 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=30.8
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYL 257 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~ 257 (368)
..|..|-..+..+.....+.=|..||..|..+-+.....|--|+.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCc
Confidence 467788765555555555667788888888876666667777763
No 150
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=36.53 E-value=15 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=18.3
Q ss_pred CCcccccccccccc---cccccccCccccCC
Q 017657 159 ENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (368)
Q Consensus 159 dg~~yC~~cy~~~f---~p~C~~C~~~I~~~ 186 (368)
=|..+|..|+.+.. ...|..|.+++...
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 45567777765543 35788888877653
No 151
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=36.46 E-value=8 Score=35.20 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.2
Q ss_pred EEEEecCCcHHH-----HHHHHhhhccc
Q 017657 345 AILILYGLPRFV-----ICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~-----~~~ilahe~~h 367 (368)
.|+|-.||=..+ -.+|||||++|
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH 110 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINH 110 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHH
Confidence 577778876666 45799999998
No 152
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=36.43 E-value=17 Score=32.06 Aligned_cols=23 Identities=0% Similarity=-0.178 Sum_probs=14.8
Q ss_pred EEEEecCCcHHHHHHHHhhhccc
Q 017657 345 AILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~~~~ilahe~~h 367 (368)
+|....+=--+.+..++|||++|
T Consensus 124 gv~~~~~~~~~~~a~~~AHElGH 146 (214)
T 1r55_A 124 GVSTDHSELPIGAAATMAHEIGH 146 (214)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHH
T ss_pred EEEeeCCCchhHHHHHHHHHHHH
Confidence 34444332234568999999998
No 153
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=36.26 E-value=6.2 Score=35.04 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=9.1
Q ss_pred cCCcccccccccc
Q 017657 158 SENRPYHKSCYRE 170 (368)
Q Consensus 158 ~dg~~yC~~cy~~ 170 (368)
.+|+++|..|+.+
T Consensus 190 ~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 190 LNGKPVCKPDYYG 202 (204)
T ss_dssp ETTEEECHHHHHC
T ss_pred eCCcEEChhhhcc
Confidence 4677788888754
No 154
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=35.47 E-value=9.6 Score=28.52 Aligned_cols=42 Identities=21% Similarity=0.491 Sum_probs=21.8
Q ss_pred cccCCCCCCCCCceeecc-CCccccccccccccc----ccccccCccc
Q 017657 141 FCCHACHQPITDIEFSTS-ENRPYHKSCYREHYH----PKCDVCKHFI 183 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~-dg~~yC~~cy~~~f~----p~C~~C~~~I 183 (368)
|.|..|...+.+. .... =|..||..|..+.+. ..|..|...+
T Consensus 14 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 5666666555432 2223 366778877654321 3455555443
No 155
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=35.29 E-value=32 Score=26.05 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.3
Q ss_pred CCcchHHHHHHHhhhhhhh
Q 017657 42 EQENEDIDRAIALSLLEEN 60 (368)
Q Consensus 42 ~~~~e~~~~aia~sl~e~~ 60 (368)
+.+++|+-+||+.||.|-+
T Consensus 52 edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 52 EEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp CCSCHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHH
Confidence 6778999999999998654
No 156
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=34.84 E-value=13 Score=32.84 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=14.4
Q ss_pred EEEEecCCcHHHHHHHHhhhccc
Q 017657 345 AILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~~~~ilahe~~h 367 (368)
+|.--+|+ ....++|||++|
T Consensus 132 gi~~d~~~---~~a~~~AHElGH 151 (217)
T 3b8z_A 132 AVIEDDGL---HAAFTVAHEIGH 151 (217)
T ss_dssp EEEECCSS---SHHHHHHHHHHH
T ss_pred ceeccCCc---chhhhhHhhhhh
Confidence 44444564 567899999998
No 157
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=34.80 E-value=20 Score=27.68 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=33.0
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|...+ .+......=|..||..|....+.....|--|..++
T Consensus 16 ~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 16 LMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp TBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 6788998766 23444337899999999988776667788887544
No 158
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=34.68 E-value=14 Score=29.36 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=15.3
Q ss_pred CCcccccccccccc---cccccccCccccC
Q 017657 159 ENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 159 dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
=|..||..|....+ ...|..|...+..
T Consensus 70 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 70 CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34557777764432 2366667666653
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=33.72 E-value=17 Score=32.66 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccccC
Q 017657 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
+.-|.|..|...+.+ ......|..||+.|..+-+ ...|..|+.++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456778888777665 3344578888988865432 2237777777653
No 160
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=33.65 E-value=15 Score=35.42 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=15.2
Q ss_pred EEEEEecCCcHHHHHHHHhhhccc
Q 017657 344 TAILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 344 ~~il~l~glpr~~~~~ilahe~~h 367 (368)
.+|.--+|| .+..|+||||+|
T Consensus 133 ~gv~~d~~~---~~a~~~AHElGH 153 (378)
T 2rjq_A 133 CAVIEDDGL---HAAFTVAHEIGH 153 (378)
T ss_dssp EEEEECCST---THHHHHHHHHHH
T ss_pred cceEcccCc---chhhhhhhhhhh
Confidence 344444564 578999999998
No 161
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=33.46 E-value=18 Score=27.47 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=32.7
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|...+. +......=|..+|..|....+.....|--|..++
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 57888987663 3333226889999999988777667888888554
No 162
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=33.33 E-value=19 Score=35.19 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=15.6
Q ss_pred EEEEecCCcHHHHHHHHhhhccc
Q 017657 345 AILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~~~~ilahe~~h 367 (368)
+|...++---+.+..|+||||+|
T Consensus 127 gv~~d~~~~~~~~a~t~AHElGH 149 (397)
T 3k7n_A 127 AIVQDYNRRISLVASTITHELGH 149 (397)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHH
T ss_pred EEEeecCCccchhhhhHHHHHHH
Confidence 44444442335778899999998
No 163
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=33.24 E-value=18 Score=29.49 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=31.9
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|...+. .. +.+.=|+.||..|..........|--|..+|
T Consensus 54 ~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccC--Cc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 46888876552 23 3467889999999987766677888888554
No 164
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=33.05 E-value=25 Score=25.33 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=14.7
Q ss_pred cccccccccccccccccCccccC
Q 017657 163 YHKSCYREHYHPKCDVCKHFIPS 185 (368)
Q Consensus 163 yC~~cy~~~f~p~C~~C~~~I~~ 185 (368)
+|..|..+. ..|..|...|..
T Consensus 47 ~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 47 TCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp CCHHHHTTC--SBCTTTCCBCSE
T ss_pred HHHHhhhcC--ccCCCcCcCccC
Confidence 666665554 778888888763
No 165
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=32.54 E-value=18 Score=35.61 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=15.6
Q ss_pred EEEEecCCcHHHHHHHHhhhccc
Q 017657 345 AILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~~~~ilahe~~h 367 (368)
+|...++---+.+..|+||||+|
T Consensus 132 gv~~d~~~~~~~~a~t~AHElGH 154 (422)
T 3k7l_A 132 AVVQDYSSRTRMVAITMAHEMGH 154 (422)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHH
T ss_pred eEEeecCCcchhhhHHHHHHHHH
Confidence 44444442346778899999998
No 166
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=32.28 E-value=42 Score=23.15 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCCccccCCcccccCceEeecCceecCCCc--------ccCCCCCCCCC
Q 017657 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECF--------CCHACHQPITD 152 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF--------~C~~C~~~L~~ 152 (368)
....|.-|...+.....+.--|..||..|. +|..|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 345788888887332233334667888876 48888888764
No 167
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.16 E-value=18 Score=25.64 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=32.9
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhHH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQ 260 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I~ 260 (368)
+.|..|...+ ... +.+.=|..||..|..+.+.....|--|+.+|.
T Consensus 16 ~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 16 PECAICLQTC--VHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CBCSSSSSBC--SSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCccCCccc--CCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 5788888655 222 34578899999999987666678888886553
No 168
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.87 E-value=4.3 Score=29.81 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=26.7
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhHHHHHHHhccccccccchhhHh
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (368)
.+|-.|+..|. + ....+.++|..|-.. -||...+|++|.+
T Consensus 9 L~CP~ck~~L~----~-~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 9 LVCPLCKGPLV----F-DKSKDELICKGDRLA-----------------------FPIKDGIPMMLES 48 (68)
T ss_dssp CBCTTTCCBCE----E-ETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eECCCCCCcCe----E-eCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 45777776552 2 234677888877432 5788889999887
No 169
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.41 E-value=12 Score=26.11 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=26.8
Q ss_pred cccCCCCC-CCCCce---eeccCCcccccccccccc---cccccccCccccCC
Q 017657 141 FCCHACHQ-PITDIE---FSTSENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (368)
Q Consensus 141 F~C~~C~~-~L~~~~---f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~~ 186 (368)
+.|..|.. .+.+.. ....=|..||..|..+.+ ...|..|.+.+..+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 34566655 332211 223456778888876552 35688888888754
No 170
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=31.30 E-value=17 Score=33.73 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=14.6
Q ss_pred EEEEecCCcHHHHHHHHhhhccc
Q 017657 345 AILILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 345 ~il~l~glpr~~~~~ilahe~~h 367 (368)
+|.-=+|| .+..++||||+|
T Consensus 134 gi~~d~~~---~~a~t~AHElGH 153 (300)
T 2v4b_A 134 SVIEDDGL---QAAFTTAHELGH 153 (300)
T ss_dssp EEEECSST---THHHHHHHHHHH
T ss_pred ceEcccCc---cceehhhhhhhh
Confidence 44444553 578999999998
No 171
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.25 E-value=20 Score=25.10 Aligned_cols=43 Identities=23% Similarity=0.556 Sum_probs=31.5
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|-..+. . +.+.=|..+|..|..+.+.....|--|+.+|
T Consensus 16 ~~C~IC~~~~~-~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 16 EECCICMDGRA-D---LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCSSSCCSCC-S---EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCeeCCcCcc-C---cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 57888876553 2 4567889999999988766667787777544
No 172
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=30.66 E-value=18 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=14.6
Q ss_pred CCccccccccccccc---ccccccCccccC
Q 017657 159 ENRPYHKSCYREHYH---PKCDVCKHFIPS 185 (368)
Q Consensus 159 dg~~yC~~cy~~~f~---p~C~~C~~~I~~ 185 (368)
-|..||..|..+.+. ..|..|...|..
T Consensus 96 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 96 CFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 345567777544322 256666666553
No 173
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=29.96 E-value=11 Score=31.18 Aligned_cols=43 Identities=21% Similarity=0.484 Sum_probs=30.3
Q ss_pred cccCCCCCCCCCceeeccCCccccccccccccc---ccccccCcccc
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYH---PKCDVCKHFIP 184 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~---p~C~~C~~~I~ 184 (368)
|.|..|...+... ....-|..||..|..+... ..|..|...|.
T Consensus 32 ~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 6777777766543 4446778899998776543 57888988764
No 174
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.65 E-value=17 Score=25.83 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=31.0
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|...+. +......=|..+|..|....+.....|--|+.+|
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 16 ILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 57888877652 2333226788999999987766567787777443
No 175
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=29.57 E-value=9.8 Score=30.19 Aligned_cols=19 Identities=26% Similarity=0.677 Sum_probs=14.0
Q ss_pred ccccccccccccCccccCC
Q 017657 168 YREHYHPKCDVCKHFIPSN 186 (368)
Q Consensus 168 y~~~f~p~C~~C~~~I~~~ 186 (368)
|.+.-..+|..|+..|.-.
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kg 38 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKD 38 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTT
T ss_pred EeCCCCCcchhhCCccCCC
Confidence 4555567899999999854
No 176
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.68 E-value=17 Score=28.50 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=7.4
Q ss_pred CccccCCccc
Q 017657 114 RICAGCNNEI 123 (368)
Q Consensus 114 ~~C~~C~~~I 123 (368)
..|+.|+.++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 6677787776
No 177
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=28.38 E-value=19 Score=30.24 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=25.4
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccccC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
|.|..|...+.+. ....-|..||..|..+.+ ..+|..|...|..
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4566665555442 233556667777765543 2367777776654
No 178
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.36 E-value=5 Score=29.45 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhHHHHHHHhccccccccchhhHh
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (368)
.+|-.|+..|. | ....+.++|..|-.. -||...+|++|.+
T Consensus 9 L~CP~ck~~L~----~-~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 9 LVCPVTKGRLE----Y-HQDKQELWSRQAKLA-----------------------YPIKDGIPYMLEN 48 (68)
T ss_dssp CBCSSSCCBCE----E-ETTTTEEEETTTTEE-----------------------EEEETTEECCCTT
T ss_pred eECCCCCCcCe----E-eCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 56777776552 2 234577888777432 5777889998886
No 179
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.19 E-value=28 Score=25.05 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=15.0
Q ss_pred cccccccccccccccccCccccC
Q 017657 163 YHKSCYREHYHPKCDVCKHFIPS 185 (368)
Q Consensus 163 yC~~cy~~~f~p~C~~C~~~I~~ 185 (368)
+|..|..+ ..+|..|..+|..
T Consensus 48 ~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 48 TCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp BCHHHHHH--CSBCTTTCCBCCC
T ss_pred HHHHHhhC--CCCCccCCceecC
Confidence 66666644 3689999988874
No 180
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=28.15 E-value=20 Score=28.08 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=27.3
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccccC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
+.|..|...+.+. ....-|..||..|..+.+ ...|..|...|..
T Consensus 24 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4566666555432 224566778888875543 3478888887764
No 181
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=28.00 E-value=1.4e+02 Score=23.50 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=31.9
Q ss_pred CCCccccCCcccccCceEeec----CceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCccc
Q 017657 112 GYRICAGCNNEIGHGRFLNCL----DVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFI 183 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~----g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f~p~C~~C~~~I 183 (368)
....|..|+. .|+.|... .+.||..|.. |.. .-.|.-||..| .|..|++..
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBC
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCC
Confidence 3456888883 36666654 2678887753 322 23566788877 477777653
No 182
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=27.79 E-value=20 Score=28.21 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=25.1
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccccC
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
|.|..|...+... ....-|..||..|..+.+ ...|..|...|..
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4555555544432 223456667877765532 2377788777764
No 183
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=26.41 E-value=24 Score=26.76 Aligned_cols=33 Identities=30% Similarity=0.681 Sum_probs=26.7
Q ss_pred CCCccccCCcccccCceEeecCceecCCCcccC
Q 017657 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCH 144 (368)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~a~g~~wH~~CF~C~ 144 (368)
....|.-|.+.+.+..+|.+-...-|+-||-|+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 456788899988777888888878888888886
No 184
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.28 E-value=14 Score=25.62 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=30.6
Q ss_pred CccCCCCCcCCC----CCceEEccCCcccccchhhhhccCCCCCCcchHh
Q 017657 213 PRCCSCERMEPQ----DTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (368)
Q Consensus 213 f~C~~C~r~l~~----~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (368)
+.|..|...+.. +...+.+.=|..+|..|..+.+.....|--|+.+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCc
Confidence 568888764421 2333556778899999998766556667777633
No 185
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=26.11 E-value=35 Score=26.67 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=34.0
Q ss_pred cCCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchH
Q 017657 209 HDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYL 257 (368)
Q Consensus 209 H~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~ 257 (368)
|-+=+.|.+|-.. +..-+ --.+..+|+.|...+...+..|.-|++
T Consensus 25 ~~G~~nCKsCWf~---~k~LV-~C~dHYLCl~CLtlmL~~SdrCpIC~~ 69 (99)
T 2ko5_A 25 HLGPQFCKSCWFE---NKGLV-ECNNHYLCLNCLTLLLSVSNRCPICKM 69 (99)
T ss_dssp CSCCCCCCSSCSC---CSSEE-ECSSCEEEHHHHHHTCSSSSEETTTTE
T ss_pred ccCcccChhhccc---cCCee-eecchhhHHHHHHHHHhhccCCcccCC
Confidence 4445689999842 33444 457789999999998888999999993
No 186
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.75 E-value=46 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=7.3
Q ss_pred CCCccccCCccc
Q 017657 112 GYRICAGCNNEI 123 (368)
Q Consensus 112 ~~~~C~~C~~~I 123 (368)
....|+-|...+
T Consensus 14 ~~~~C~IC~~~~ 25 (81)
T 2ecl_A 14 ECDTCAICRVQV 25 (81)
T ss_dssp CCSCBTTTTBCT
T ss_pred CCCCCcccChhh
Confidence 345566666665
No 187
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=25.71 E-value=27 Score=35.33 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=14.3
Q ss_pred EecCCcHHHHHHHHhhhccc
Q 017657 348 ILYGLPRFVICLALSNVCTR 367 (368)
Q Consensus 348 ~l~glpr~~~~~ilahe~~h 367 (368)
+.++- .+++..|+||||+|
T Consensus 126 ~~d~~-~~~~A~t~AHELGH 144 (510)
T 3g5c_A 126 NEFGK-TDLMAVTLAQSLAH 144 (510)
T ss_dssp EECCC-HHHHHHHHHHHHHH
T ss_pred EEECC-cchhhHHHHHHHHH
Confidence 34542 46788999999998
No 188
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.12 E-value=27 Score=30.28 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc---cccccccCccccC
Q 017657 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (368)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~f---~p~C~~C~~~I~~ 185 (368)
|.-|.|..|...+.+ ......|..||+.|..+.+ +..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 445677777666655 3444678888888854432 2357777776653
No 189
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.11 E-value=27 Score=26.46 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=9.5
Q ss_pred CCCccCCCCCcCC
Q 017657 211 GTPRCCSCERMEP 223 (368)
Q Consensus 211 ~Cf~C~~C~r~l~ 223 (368)
.-|.|..|++.+.
T Consensus 79 ~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 79 KVLKCMYCGHSFE 91 (115)
T ss_dssp SSCBCSSSCCBCS
T ss_pred cceECCCCCCccC
Confidence 3478888988763
No 190
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.29 E-value=21 Score=26.19 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=27.1
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhHHHHHHHhccccccccchhhHh
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (368)
.+|-.|+..|. | ....|.++|..|-.. -||...+|++|.+
T Consensus 9 L~CP~ck~~L~----~-~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (70)
T 2js4_A 9 LVCPVCKGRLE----F-QRAQAELVCNADRLA-----------------------FPVRDGVPIMLEA 48 (70)
T ss_dssp CBCTTTCCBEE----E-ETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eECCCCCCcCE----E-eCCCCEEEcCCCCce-----------------------ecCCCCeeeeChh
Confidence 56778876552 2 234677888877432 5788899999886
No 191
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.75 E-value=12 Score=30.14 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=13.4
Q ss_pred ccccccccccccCccccCC
Q 017657 168 YREHYHPKCDVCKHFIPSN 186 (368)
Q Consensus 168 y~~~f~p~C~~C~~~I~~~ 186 (368)
|.+.-...|..|++.|.-.
T Consensus 15 YAKS~RA~Ck~Ck~kI~Kg 33 (114)
T 1v9x_A 15 YAKSSRSSCKTCKSVINKE 33 (114)
T ss_dssp ECSCSCCBCSSSCCBCCSS
T ss_pred EeCCCCCCchhhCCccCCC
Confidence 4444456888999999853
No 192
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=23.70 E-value=28 Score=29.09 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=31.5
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccC-CCCCCcchHhH
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD-TNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~-~~~C~~c~~~I 259 (368)
+.|..|...+. .......=|..+|..|..+.+.. ...|--|..+|
T Consensus 55 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 57888887663 34333377899999999887654 55677777544
No 193
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=23.43 E-value=19 Score=28.85 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=15.2
Q ss_pred CCCCCCCccccCCcccccCc
Q 017657 108 QFPEGYRICAGCNNEIGHGR 127 (368)
Q Consensus 108 ~~~~~~~~C~~C~~~I~~g~ 127 (368)
+.+.+-..|.+|++.|..|+
T Consensus 14 yAkS~Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 14 YAKSNRSTCKGCMEKIEKGQ 33 (111)
T ss_dssp ECSSSCCBCTTTCCBCCTTC
T ss_pred EeecCCccccccCCCccCCc
Confidence 34456788999999996663
No 194
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.99 E-value=24 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=13.7
Q ss_pred cccCCCCCCCCCceeeccCCccccccccccc
Q 017657 141 FCCHACHQPITDIEFSTSENRPYHKSCYREH 171 (368)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~yC~~cy~~~ 171 (368)
+.|..|...+.+. ....=|..||..|..+.
T Consensus 21 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 21 VICPICLDILQKP-VTIDCGHNFCLKCITQI 50 (63)
T ss_dssp CBCTTTCSBCSSC-EECTTSSEECHHHHHHH
T ss_pred CCCCcCCchhCCe-EEeCCCCcchHHHHHHH
Confidence 3444444444321 12234555666665443
No 195
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=22.96 E-value=44 Score=25.74 Aligned_cols=44 Identities=7% Similarity=-0.072 Sum_probs=32.9
Q ss_pred CCCCccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcch
Q 017657 210 DGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLY 256 (368)
Q Consensus 210 ~~Cf~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~ 256 (368)
+.-|.|..|..++ .+..+ +..|..||+.|...-+.....|-.|.
T Consensus 27 p~~~~CpI~~~~m--~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~ 70 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVR-LPSGTIMDRSIILRHLLNSPTDPFNR 70 (100)
T ss_dssp STTTBCTTTCSBC--SSEEE-ETTTEEEEHHHHHHHTTSCSBCSSSC
T ss_pred cHhhCCcCccCcc--cCCeE-CCCCCEEchHHHHHHHHcCCCCCCCC
Confidence 3448999999866 45544 67999999999987766556677666
No 196
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.17 E-value=22 Score=26.03 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=26.2
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhhhccCCCCCCcchHhHHHHHHHhccccccccchhhHh
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (368)
.+|-.|+..|. | ....+.++|..|-.. -||...+|++|.+
T Consensus 9 L~CP~ck~~L~----~-~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 9 LACPICKGPLK----L-SADKTELISKGAGLA-----------------------YPIRDGIPVMLES 48 (69)
T ss_dssp CCCTTTCCCCE----E-CTTSSEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eeCCCCCCcCe----E-eCCCCEEEcCCCCcE-----------------------ecCcCCeeeeChh
Confidence 46777776552 1 123567788777432 5788889998886
No 197
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=21.98 E-value=22 Score=37.07 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=11.2
Q ss_pred HHHHHHhhhcccC
Q 017657 356 VICLALSNVCTRR 368 (368)
Q Consensus 356 ~~~~ilahe~~h~ 368 (368)
..|+|+||||+|-
T Consensus 500 ~iG~vigHEi~H~ 512 (670)
T 3dwb_A 500 GIGVVVGHELTHA 512 (670)
T ss_dssp THHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc
Confidence 5689999999993
No 198
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=21.95 E-value=13 Score=25.32 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=31.2
Q ss_pred CccCCCCCcCCC----CCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQ----DTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~----~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|...+.. +...+.+.=|..+|..|..+.+.....|--|..++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 467788765421 23334567889999999987766666777777433
No 199
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.33 E-value=32 Score=26.06 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCcccCCCCCCCCCceeec-cCCccccccccccc
Q 017657 139 ECFCCHACHQPITDIEFST-SENRPYHKSCYREH 171 (368)
Q Consensus 139 ~CF~C~~C~~~L~~~~f~~-~dg~~yC~~cy~~~ 171 (368)
.=|.|..|...+.+ .... ..|..||+.|..+.
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~ 38 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRM 38 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHH
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHH
Confidence 34788888887776 4444 58889999886543
No 200
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.28 E-value=36 Score=22.58 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=5.5
Q ss_pred Ccccccccccc
Q 017657 160 NRPYHKSCYRE 170 (368)
Q Consensus 160 g~~yC~~cy~~ 170 (368)
|..||..|..+
T Consensus 34 gH~fC~~Ci~~ 44 (58)
T 2ecj_A 34 GHNFCKACITR 44 (58)
T ss_dssp CCCCCHHHHHH
T ss_pred CCccCHHHHHH
Confidence 44455555443
No 201
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=21.18 E-value=25 Score=25.82 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.9
Q ss_pred hhhhccCCCC-CcccCcccCCCC
Q 017657 4 LSKIFKGSSH-SITEGHSHRNYG 25 (368)
Q Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~ 25 (368)
|.|+||-+.| ||..|+|.|..+
T Consensus 14 LrK~F~~GDHVkVi~G~~~getG 36 (69)
T 2do3_A 14 LRKYFKMGDHVKVIAGRFEGDTG 36 (69)
T ss_dssp CCSSCCTTCEEEESSSTTTTCEE
T ss_pred ceeeccCCCeEEEeccEEcCceE
Confidence 7899998877 899998886554
No 202
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=20.57 E-value=18 Score=32.04 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=21.3
Q ss_pred CccCCCCCcCCCCCceEEccCCcccccchhhh
Q 017657 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (368)
Q Consensus 213 f~C~~C~r~l~~~~~f~~~~dg~~~C~~C~~~ 244 (368)
..|..|+-...... ..+.+|+.+|..|+..
T Consensus 173 ~~C~~CGE~~~~~~--~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEAD--AKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGG--CEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcc--eeeeCCcEEChhhhcc
Confidence 46999997653222 2245899999999875
No 203
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=20.34 E-value=25 Score=28.47 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=15.3
Q ss_pred CCCCCCCccccCCcccccCc
Q 017657 108 QFPEGYRICAGCNNEIGHGR 127 (368)
Q Consensus 108 ~~~~~~~~C~~C~~~I~~g~ 127 (368)
+.+.+-..|..|++.|..|+
T Consensus 33 yAkS~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 33 YAKSGRASCKKCSESIPKDS 52 (116)
T ss_dssp ECSSSCCBCTTTCCBCCTTS
T ss_pred EeccCCccCcccCCccCCCC
Confidence 34456788999999996664
No 204
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=20.26 E-value=23 Score=29.50 Aligned_cols=10 Identities=0% Similarity=-0.134 Sum_probs=8.7
Q ss_pred HHHHhhhccc
Q 017657 358 CLALSNVCTR 367 (368)
Q Consensus 358 ~~ilahe~~h 367 (368)
-.|++||++|
T Consensus 109 ~~v~~HEiGH 118 (160)
T 2jsd_A 109 FTVAAHEFGH 118 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhHh
Confidence 4789999998
No 205
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=20.14 E-value=16 Score=25.66 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=31.6
Q ss_pred CccCCCCCcCCC----CCceEEccCCcccccchhhhhccCCCCCCcchHhH
Q 017657 213 PRCCSCERMEPQ----DTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (368)
Q Consensus 213 f~C~~C~r~l~~----~~~f~~~~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (368)
+.|..|...+.. +...+.+.=|..+|..|..+.+.....|--|+.++
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 568888765421 23335567788999999987666666777777433
Done!