Citrus Sinensis ID: 017658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Secondary Structure (PSIPRED)
ccccccccccHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHcccEEEccccccEEEEEcccEEEEEEEcccEEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccccHHHHccHHHHccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEcccccEEEEEEEccEEEEEEEEEEEccccHHHHHccccHHcccHHHHHHHccccEEEEEEEEEEcccEcccccccEcEcccccccEEEHcHHHcHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccHHHHccccccccccccccccccEEEcccccHHHHccccccccEEcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
maavidfdntdvawrKYDSITARELFKQFgcserlyrnvigplvqvglfapaeqCSAAATLGILYFIILAHQKnfdlvwcrgtlrekifepwmdsmrtrgcefldgrrvtdfiydeerccisdvvcgketysAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFdkkvtvpnvsnacsgfgdslaWTFFDLNKiydehkddsaTVIQADFyhanelmplkddQVVAKAVSYLSKCIKDFSTATVMDhkirrfpkslthffpgsykymmrgftsfpnlfmagdwittrhgswsqersyVTGLEAANRVVDylgdgsfskiipveedephiEALRTVNRRFNEIraqlplsdyflq
Flexible Loop (DISEMBL)
maavidfdntdvawrkydsiTARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREkifepwmdsmrtrgcefldgRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSkiipveedephIEALRTVNRRFNEiraqlplsdyflq
Low Complexity Region (SEG)
MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Disordered region (IsUnstruct)
***VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPL******
Disordered Region (DISOPRED)
MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Disordered Region (DISEMBL)
MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Disordered Region (DISPRO)
MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQLPLSDYFLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
P26294	474	15-cis-phytoene desaturas	yes	no	0.812	0.630	0.200	2e-09
P29273	472	Phytoene dehydrogenase OS	N/A	no	0.815	0.635	0.187	2e-08
P80093	582	15-cis-phytoene desaturas	N/A	no	0.820	0.518	0.188	2e-07
P49086	571	Phytoene dehydrogenase, c	N/A	no	0.820	0.528	0.201	3e-07
Q07356	566	15-cis-phytoene desaturas	yes	no	0.820	0.533	0.194	5e-07
P28553	570	Phytoene dehydrogenase, c	yes	no	0.815	0.526	0.187	1e-06
Q0DUI8	578	Phytoene dehydrogenase, c	no	no	0.817	0.520	0.196	3e-06
A2XDA1	578	Phytoene dehydrogenase, c	N/A	no	0.817	0.520	0.196	3e-06
Q9R6X4	479	Zeta-carotene desaturase	no	no	0.861	0.661	0.210	4e-06
P74306	489	Zeta-carotene desaturase	N/A	no	0.861	0.648	0.219	7e-06

>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=1 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 143/314 (45%), Gaps = 15/314 (4%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D  +  E  ++    ER+   V   + +   F   ++ SA   L  L    L  +K   +
Sbjct: 147 DQYSWTEWLRKQNIPERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGSMM 205

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYS 132
            +  G   E++ +P ++ ++ RG + L    + +F+ +++    +  + G     ++   
Sbjct: 206 AFLDGAPPERLCQPIVEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIE 265

Query: 133 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS 192
           A A V A+ +  L+ L+ ++       F ++  L  + V+++ LWFD+K+T  ++ +   
Sbjct: 266 ADAYVSALPVDPLKLLLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHLLF 322

Query: 193 GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-K 251
                L+  + D++    E++D   ++++  F  A + +   D+ ++A  ++ + K   +
Sbjct: 323 SRSPLLS-VYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQ 381

Query: 252 DFS---TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQE 308
            FS    A +  +KI + P S+    PG  +Y     +   N F+ GD+   R+ + S E
Sbjct: 382 HFSGENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLA-SME 440

Query: 309 RSYVTGLEAANRVV 322
            + ++G   A  ++
Sbjct: 441 GAVLSGKLTAQAII 454

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. Also active with phytofluene and 1,2-epoxyphytoene as substrates.
Synechococcus elongatus (strain PCC 7942) (taxid: 1140)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 5

>sp|P29273|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pds PE=3 SV=2

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/315 (18%), Positives = 136/315 (43%), Gaps = 15/315 (4%)

Query: 16  KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 75
           + D  T  E   +     R+ + V   + +   F   ++ SA   L  L    L  +   
Sbjct: 145 EMDKYTWSEWMAKQNIPPRIEKEVFIAMSKALNFIDPDEISATILLTALNRF-LQEKNGS 203

Query: 76  DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KET 130
            + +  G   E++ +P +D +  RG E    + + + + +E+      ++ G      E 
Sbjct: 204 KMAFLDGAPPERLCQPLVDYITERGGEVHINKPLKEILLNEDGSVKGYLIRGLDGAPDEV 263

Query: 131 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 190
            +A   V A+ +  L+ ++  +      EF ++  L  + V+++ LWFD+K+T  ++ + 
Sbjct: 264 ITADLYVSAMPVDPLKTMVP-APWREYPEFKQIQGLEGVPVINLHLWFDRKLT--DIDHL 320

Query: 191 CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI 250
                  L+  + D++    E+ D   ++++     A + +   D+++VA  ++ + +  
Sbjct: 321 LFSRSPLLS-VYADMSNTCREYSDPDKSMLELVLAPAQDWIGKSDEEIVAATMAEIKQLF 379

Query: 251 KDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWS 306
                  + A ++   + + P+S+    PG         TS PN ++AGD+   ++   S
Sbjct: 380 PQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLG-S 438

Query: 307 QERSYVTGLEAANRV 321
            E + ++G + A  +
Sbjct: 439 MEGAVLSGKQCAQAI 453

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/313 (18%), Positives = 131/313 (41%), Gaps = 11/313 (3%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D I+ ++  ++ G  +R+   V   + +   F   ++ S    L I     L  +    +
Sbjct: 258 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 316

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
            +  G   E++  P ++ + ++G +     R+     +E+      ++    T    A V
Sbjct: 317 AFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFILNDGSTIEGDAFV 376

Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
            A  +   + L+          F K+  L  + V++V +WFD+K+   N S+        
Sbjct: 377 FATPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTSDNLLFSRSP 433

Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
           L   + D++    E+ D + ++++  F  A E +   D +++   +  L+K        D
Sbjct: 434 LLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISAD 493

Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
            S A ++ + + + P+S+    PG     +   +     ++AGD+   ++ + S E + +
Sbjct: 494 QSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLA-SMEGAVL 552

Query: 313 TGLEAANRVV-DY 324
           +G   A  +V DY
Sbjct: 553 SGKLCAQAIVQDY 565

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The favored substrate is 15-cis-phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway.

Capsicum annuum (taxid: 4072)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 128/313 (40%), Gaps = 11/313 (3%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D +T  E  K+ G  +R+   V   + +   F   ++ S    L I     L  +    +
Sbjct: 244 DGLTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 302

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
            +  G   E++  P +D +R+RG E     R+     + +       +      +  A V
Sbjct: 303 AFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKIELNPDGTVKHFALSDGTQITGDAYV 362

Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
            A  +   + L+          F K+  L  + V++V +WFD+K+   N  +       S
Sbjct: 363 CATPVDIFKLLVPQE-WSEITYFKKLEKLVGVPVINVHIWFDRKLN--NTYDHLLFSRSS 419

Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
           L   + D++    E+ D + ++++  F  A+E +   D +++   +  L+K        D
Sbjct: 420 LLSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAAD 479

Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
            S A ++ + I + P+S+    P          +     ++AGD+   ++ + S E + +
Sbjct: 480 QSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 538

Query: 313 TGLEAANRVV-DY 324
           +G   A  +V DY
Sbjct: 539 SGKLCAQSIVQDY 551

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=1 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 130/313 (41%), Gaps = 11/313 (3%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D ++ +E  ++ G  ER+   V   + +   F   ++ S    L I     L  +    +
Sbjct: 240 DGLSVKEWMEKQGVPERVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 298

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
            +  G   E++  P +D +R+ G E     R+     +++    S ++    T    A V
Sbjct: 299 AFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYV 358

Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
            A  +  L+ L+ +        F K+  L  + V++V +WFD+K+   N  +       +
Sbjct: 359 FAAPVDILKLLLPDP-WKEIPYFKKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSN 415

Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
           L   + D++    E+ D + ++++  F  A E +   D  ++   +  L K        D
Sbjct: 416 LLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISAD 475

Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
            S A ++ + + + P+S+    P          +     ++AGD+   ++ + S E + +
Sbjct: 476 QSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 534

Query: 313 TGLEAANRVV-DY 324
           +G   +  +V DY
Sbjct: 535 SGKFCSQSIVQDY 547

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. The zeta-carotene produced has a central C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS, the next enzyme in the lycopene biosynthesis pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/310 (18%), Positives = 130/310 (41%), Gaps = 10/310 (3%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D ++ +E  K+ G  ER+   V   + +   F   ++ S    L I     L  +    +
Sbjct: 246 DGLSVQEWMKKQGVPERVADEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 304

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
            +  G   E++  P +D +++ G E     R+     +++    S ++   +     A V
Sbjct: 305 AFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYV 364

Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
            A  +  L+ L+ ++       F ++  L  + V++V +WFD+K+   N  +        
Sbjct: 365 FATPVDILKLLLPDN-WKGIPYFQRLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSP 421

Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
           L   + D++    E+   + ++++  F  A E +   DD ++   ++ L+K        D
Sbjct: 422 LLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISAD 481

Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
            S A ++ + + + P+S+    P          +     ++AGD+   ++ + S E + +
Sbjct: 482 QSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 540

Query: 313 TGLEAANRVV 322
           +G   A  +V
Sbjct: 541 SGKLCAQAIV 550

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/311 (19%), Positives = 125/311 (40%), Gaps = 10/311 (3%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D  T  E  K+ G  +R+   V   + +   F   ++ S    L I     L  +    +
Sbjct: 252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 310

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
            +  G   E++  P +D +R+ G E     R+     + +       +      +  A V
Sbjct: 311 AFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYV 370

Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
            A  +  L+ L+          F K+  L  + V++V +WFD+K+   N  +       S
Sbjct: 371 FATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 427

Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
           L   + D++    E+ D + ++++  F  A E +   D +++   +  L+K        D
Sbjct: 428 LLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAAD 487

Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
            S A ++ + + + P+S+    P          +     ++AGD+   ++ + S E + +
Sbjct: 488 QSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 546

Query: 313 TGLEAANRVVD 323
           +G   A  VV+
Sbjct: 547 SGKLCAQSVVE 557

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/311 (19%), Positives = 125/311 (40%), Gaps = 10/311 (3%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D  T  E  K+ G  +R+   V   + +   F   ++ S    L I     L  +    +
Sbjct: 252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 310

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
            +  G   E++  P +D +R+ G E     R+     + +       +      +  A V
Sbjct: 311 AFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYV 370

Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
            A  +  L+ L+          F K+  L  + V++V +WFD+K+   N  +       S
Sbjct: 371 FATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 427

Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
           L   + D++    E+ D + ++++  F  A E +   D +++   +  L+K        D
Sbjct: 428 LLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAAD 487

Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
            S A ++ + + + P+S+    P          +     ++AGD+   ++ + S E + +
Sbjct: 488 QSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 546

Query: 313 TGLEAANRVVD 323
           +G   A  VV+
Sbjct: 547 SGKLCAQSVVE 557

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=crtQ PE=3 SV=2

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 134/342 (39%), Gaps = 25/342 (7%)

Query: 3   AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 62
            ++DF+      R  D I+  + F+  G S    + +  P+     F   E  SA   L 
Sbjct: 138 GLVDFEGAMKTIRNLDKISFADWFRSHGGSNGSIKRMWNPIAYALGFIDCENISARCMLT 197

Query: 63  ILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCC 120
           I  F  +  + +  L    G+  E + +P +  +  RG +    R+V +  Y E   +  
Sbjct: 198 IFQFFAVRSEASV-LRMLEGSPDEYLHQPILRYLEARGTKVYTRRQVREIKYAEAEGQTR 256

Query: 121 ISDVVCGK----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKL 176
           ++ +V  K    E  +A A V A  I  +Q ++         EF  +  L ++ V +V++
Sbjct: 257 VTGIVVAKGDEVEEITADAYVCACDIPGIQRVLPQE-WRKWSEFDNIYKLDAVPVATVQM 315

Query: 177 WFDKKVTVPNVSNA------CSGFGDSLAWT-------FFDL--NKIYDEHKDDSATVIQ 221
            FD  VT     N        +G  D+L +T       F DL      D ++    +++Q
Sbjct: 316 RFDGWVTELQDENKRKQLKEAAGL-DNLLYTADADFSCFADLALTSPSDYYRQGQGSLLQ 374

Query: 222 ADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM 281
                 +  +   ++ +    +  + +         +  + + +  +SL    PG   Y 
Sbjct: 375 LVLTPGDPFIKESNEAIAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYR 434

Query: 282 MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323
               T   N F+AG + T +    S E + V+G  AA  ++D
Sbjct: 435 PNQKTPIANFFLAGSY-TQQDYIDSMEGATVSGRRAAKVILD 475

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crtQ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 24/341 (7%)

Query: 3   AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 62
            ++DFD      R  D I+  E F   G +E   + +  P+     F   E  SA   L 
Sbjct: 138 GLVDFDGAMKTIRDLDRISFAEWFLSKGGNEGSLKKMWDPIAYALGFIDTENISARCMLT 197

Query: 63  ILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDF---IYDEER- 118
           I + +  A  +   L    G+ +E + +P  + +  RG +F    +V +    + D E  
Sbjct: 198 I-FQLFAARTEASVLRMLEGSPQEYLHKPIQEYLEQRGTKFYTRHKVKEIKTKVTDGETR 256

Query: 119 ---CCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVK 175
                I+D V  K T +A A V A  +  ++ L+  +     + F K+  L ++ V +V+
Sbjct: 257 VTGLIINDGVETK-TVTADAYVAACDVPGIKNLLPENWRTQWDFFNKIYYLDTVPVATVQ 315

Query: 176 LWFDKKVTVPN----VSNACSGFG-DSLAWT-------FFDL--NKIYDEHKDDSATVIQ 221
           L FD  VT  N           FG D+L +T       F DL      D ++    +++Q
Sbjct: 316 LRFDGWVTEMNDPAKRKQLEQAFGLDNLLYTSDAEFSCFADLALTSPADYYRPGEGSLLQ 375

Query: 222 ADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM 281
                 +  M   ++ +  + +  +       +   +  + + +  +SL    PG   + 
Sbjct: 376 LVLTPGDPFMKESNEAIAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFR 435

Query: 282 MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 322
               T   N F+AG + T +    S E + ++G +AA  ++
Sbjct: 436 PSQATPIANFFLAGSY-TQQDYIDSMEGATLSGRQAAQAIL 475

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
255560501	530	Phytoene dehydrogenase, putative [Ricinu	0.997	0.692	0.755	1e-168
359474834	530	PREDICTED: phytoene dehydrogenase-like [	0.997	0.692	0.739	1e-163
449458684	533	PREDICTED: phytoene dehydrogenase-like [	0.997	0.688	0.682	1e-156
297744581	531	unnamed protein product [Vitis vinifera]	0.997	0.691	0.704	1e-155
148910773	574	unknown [Picea sitchensis]	0.997	0.639	0.646	1e-150
38345844	529	OSJNBa0084K11.8 [Oryza sativa Japonica G	0.997	0.693	0.578	1e-131
116311132	529	B0103C08-B0602B01.15 [Oryza sativa Indic	0.997	0.693	0.578	1e-131
168030354	532	predicted protein [Physcomitrella patens	0.997	0.689	0.551	1e-129
302804622	527	hypothetical protein SELMODRAFT_180688 [	0.964	0.673	0.575	1e-128
414585892	527	TPA: hypothetical protein ZEAMMB73_06295	1.0	0.698	0.563	1e-127

>gi|255560501|ref|XP_002521265.1| Phytoene dehydrogenase, putative [Ricinus communis] gi|223539533|gb|EEF41121.1| Phytoene dehydrogenase, putative [Ricinus communis]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 278/368 (75%), Positives = 318/368 (86%), Gaps = 1/368 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           MAAVIDFDNTD AWRKYDSITARELFKQFGCSE+LYRNV GPL+QVGLFAPAEQCSAAAT
Sbjct: 163 MAAVIDFDNTDTAWRKYDSITARELFKQFGCSEKLYRNVFGPLLQVGLFAPAEQCSAAAT 222

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LGILY+I LAHQK+FD+VWCRGT+REKIF PWMDS+RT+GC FLDG +V DFI +EE  C
Sbjct: 223 LGILYYISLAHQKDFDMVWCRGTIREKIFSPWMDSLRTKGCRFLDGEKVIDFIINEETSC 282

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNSI-LCNREEFLKVLNLASIDVVSVKLWFD 179
           I +VVC  ET +A AV+LAVGIS +QEL+KNS  L  REEFLKVLNLA ID+++ KL  D
Sbjct: 283 IEEVVCSNETINADAVILAVGISKVQELVKNSAALSTREEFLKVLNLAGIDILTCKLQLD 342

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           +KV + + SNACSGF DS +WTFFDLN ++DEHKD+  T +QADFYHANEL+PL D+ VV
Sbjct: 343 RKVNLAHASNACSGFDDSFSWTFFDLNALHDEHKDNQVTTLQADFYHANELLPLTDELVV 402

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
            K +SYLSKCIKDF  A V+D +I RFPKSLTHFFPGSYK+MMRG TSFPNLFMAGDWI 
Sbjct: 403 TKTMSYLSKCIKDFENAVVIDKEISRFPKSLTHFFPGSYKHMMRGSTSFPNLFMAGDWII 462

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
           TRHGSWSQE+SYVTGLEAANRVVD+L +GSF+KII VEEDEPH++ALR+VNRRFNEI  Q
Sbjct: 463 TRHGSWSQEKSYVTGLEAANRVVDFLEEGSFAKIIAVEEDEPHVQALRSVNRRFNEISDQ 522

Query: 360 LPLSDYFL 367
           +PL  YFL
Sbjct: 523 IPLFGYFL 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474834|ref|XP_002278046.2| PREDICTED: phytoene dehydrogenase-like [Vitis vinifera]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/368 (73%), Positives = 317/368 (86%), Gaps = 1/368 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           MAAV+DFDNTD AWRKYDSITARELF+QFG S+RLY++V  PL+QVGLFAPAEQCSAAAT
Sbjct: 162 MAAVVDFDNTDTAWRKYDSITARELFRQFGFSQRLYQDVFDPLLQVGLFAPAEQCSAAAT 221

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LGILY+I+LAHQK+FD VWCRGT+R+KIF+PWMD MR  GCEFL+ RRVTDF+++EE  C
Sbjct: 222 LGILYYIVLAHQKDFDFVWCRGTVRDKIFKPWMDYMRANGCEFLESRRVTDFLFNEETGC 281

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNSI-LCNREEFLKVLNLASIDVVSVKLWFD 179
           IS+VVCG+E Y+A AVVLAVGISTLQ++IKNS  L  REEFLKVLNLA IDV++VKL FD
Sbjct: 282 ISEVVCGREKYTADAVVLAVGISTLQDIIKNSAALSTREEFLKVLNLAGIDVLTVKLQFD 341

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           +KV +P   N CSGF DS  WT+FDLN I+DE+KDD  TV+QA+FYHANEL+ LKD+ + 
Sbjct: 342 RKVNIPKAVNTCSGFDDSCGWTYFDLNAIHDEYKDDPVTVLQANFYHANELLLLKDELIA 401

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
           AK +  LSK IKD   A+V+  +I RFPKSLTHFFPGSYKYMMRG TSFPNLFMAGDWI 
Sbjct: 402 AKVMHQLSKYIKDLENASVVGQEIERFPKSLTHFFPGSYKYMMRGSTSFPNLFMAGDWIV 461

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
           TRHGSW QE+SYVTGLEAANRVVDYL +GSF+KIIPVEEDEPHI+ALR +NR  N+++AQ
Sbjct: 462 TRHGSWLQEKSYVTGLEAANRVVDYLEEGSFAKIIPVEEDEPHIQALRNLNRNLNDVKAQ 521

Query: 360 LPLSDYFL 367
           LP SDYFL
Sbjct: 522 LPWSDYFL 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458684|ref|XP_004147077.1| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus] gi|449518113|ref|XP_004166088.1| PREDICTED: phytoene dehydrogenase-like [Cucumis sativus]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 251/368 (68%), Positives = 310/368 (84%), Gaps = 1/368 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           MAAVIDFDNTD AWRKYDSITARELF+QFGCSE+LY +++ PL+QVGL+APAEQCSAAAT
Sbjct: 166 MAAVIDFDNTDTAWRKYDSITARELFRQFGCSEKLYSSILNPLLQVGLYAPAEQCSAAAT 225

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LGILY+ ILAHQ +F+LVWCRGT +E IF+PW+D + ++GC F+  R++TD   D+E  C
Sbjct: 226 LGILYYTILAHQNDFNLVWCRGTAKEMIFQPWIDLLESKGCRFVGSRKITDVTVDDETNC 285

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNSI-LCNREEFLKVLNLASIDVVSVKLWFD 179
           +SD++CG+E Y A A+V AVGIS LQELI+NS  L  +EEF+KVLNL S+D+++VKLWFD
Sbjct: 286 LSDILCGRERYEADAIVFAVGISVLQELIRNSAALYTKEEFVKVLNLRSVDLLTVKLWFD 345

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           +KV +P  SN+CS   +S  W+FF+LN I DE+KD+S TV+QADFYHA EL+PL D+ +V
Sbjct: 346 RKVNIPTASNSCSTLDNSFGWSFFNLNAIQDEYKDESVTVLQADFYHAIELLPLNDEAIV 405

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
            K  SYLS CIKDF  A V+  +I RFP+SLTHFFPGSYKYMMRGFTSFPN+FMAGDWI 
Sbjct: 406 EKVKSYLSTCIKDFENAIVVKKEIGRFPESLTHFFPGSYKYMMRGFTSFPNVFMAGDWII 465

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
            RHGSWSQE+SYVTGLEAANRVVD+L +GSF+KI+PVEEDEPH+EALR +NRR +EIR+Q
Sbjct: 466 NRHGSWSQEKSYVTGLEAANRVVDFLEEGSFAKIVPVEEDEPHVEALRGLNRRIDEIRSQ 525

Query: 360 LPLSDYFL 367
           LP + +FL
Sbjct: 526 LPFNGFFL 533

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744581|emb|CBI37843.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/369 (70%), Positives = 307/369 (83%), Gaps = 2/369 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           MAAV+DFDNTD AWRKYDSITARELF+QFG S+RLY++V  PL+QVGLFAPAEQCSAAAT
Sbjct: 162 MAAVVDFDNTDTAWRKYDSITARELFRQFGFSQRLYQDVFDPLLQVGLFAPAEQCSAAAT 221

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LGILY+I+LAHQK+FD VWCRGT+R+KIF+PWMD MR  GCEFL+ RRVTDF+++EE  C
Sbjct: 222 LGILYYIVLAHQKDFDFVWCRGTVRDKIFKPWMDYMRANGCEFLESRRVTDFLFNEETGC 281

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLASIDVVSVKLWF 178
           IS+VVCG+E Y+A A V+    S ++   L   + L  REEFLKVLNLA IDV++VKL F
Sbjct: 282 ISEVVCGREKYTADAPVIMFSTSLMENHSLTLLAALSTREEFLKVLNLAGIDVLTVKLQF 341

Query: 179 DKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQV 238
           D+KV +P   N CSGF DS  WT+FDLN I+DE+KDD  TV+QA+FYHANEL+ LKD+ +
Sbjct: 342 DRKVNIPKAVNTCSGFDDSCGWTYFDLNAIHDEYKDDPVTVLQANFYHANELLLLKDELI 401

Query: 239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWI 298
            AK +  LSK IKD   A+V+  +I RFPKSLTHFFPGSYKYMMRG TSFPNLFMAGDWI
Sbjct: 402 AAKVMHQLSKYIKDLENASVVGQEIERFPKSLTHFFPGSYKYMMRGSTSFPNLFMAGDWI 461

Query: 299 TTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRA 358
            TRHGSW QE+SYVTGLEAANRVVDYL +GSF+KIIPVEEDEPHI+ALR +NR  N+++A
Sbjct: 462 VTRHGSWLQEKSYVTGLEAANRVVDYLEEGSFAKIIPVEEDEPHIQALRNLNRNLNDVKA 521

Query: 359 QLPLSDYFL 367
           QLP SDYFL
Sbjct: 522 QLPWSDYFL 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910773|gb|ABR18453.1| unknown [Picea sitchensis]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 238/368 (64%), Positives = 301/368 (81%), Gaps = 1/368 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           M AVIDFDNTD AW+KYD +TARELF+QFGCSER+Y++   P++ VGLFAP EQCSAAA+
Sbjct: 207 MYAVIDFDNTDNAWKKYDKLTARELFRQFGCSERVYQDAFNPMLLVGLFAPGEQCSAAAS 266

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LG+LY+ IL HQ++FD+VWCRGT+ EKIF+PW++ M+TRGC+FL  +RVTDF+ DE    
Sbjct: 267 LGMLYYFILGHQQDFDVVWCRGTVGEKIFKPWIEFMKTRGCQFLANKRVTDFLLDENTGA 326

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKVLNLASIDVVSVKLWFD 179
           IS V CG E ++A AV+ AVGI+ LQ ++ NS +L  REEFL VLNL +IDV++V++W D
Sbjct: 327 ISAVACGDEIFTADAVIFAVGITALQRIVYNSPVLQQREEFLNVLNLGAIDVLAVRIWLD 386

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           +KV +P  SNAC GF DS  WTFFDL  ++DE+KD+  TV++ADFYHAN+ +PLKDDQ+V
Sbjct: 387 RKVDIPKPSNACFGFDDSTGWTFFDLTALHDEYKDEPGTVVEADFYHANQFLPLKDDQIV 446

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
            K  +YL+ CI++F  A V+D  + RFPKS+THF PGSY+YMMRG TS PNLFMAGDW+ 
Sbjct: 447 EKVKAYLTTCIEEFGKANVVDQAVVRFPKSVTHFSPGSYRYMMRGNTSIPNLFMAGDWVI 506

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
           TRHGSWSQE++YVTGLEAANRVVDY G+G F+KI+PVE+DEPH++ LR +NR FNEIR Q
Sbjct: 507 TRHGSWSQEKAYVTGLEAANRVVDYFGEGQFAKIVPVEDDEPHVQELRRLNRVFNEIRTQ 566

Query: 360 LPLSDYFL 367
           LPLSD FL
Sbjct: 567 LPLSDNFL 574

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38345844|emb|CAE01845.2| OSJNBa0084K11.8 [Oryza sativa Japonica Group]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 213/368 (57%), Positives = 286/368 (77%), Gaps = 1/368 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           MAAVIDF+NTD AW KYD+++AR+LFK FGCS++LY+ +  P +Q  LFAP EQCSAAAT
Sbjct: 162 MAAVIDFNNTDTAWMKYDAMSARDLFKMFGCSQKLYKEIFQPAIQAALFAPGEQCSAAAT 221

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LG+ Y+ +L+HQ+N D + CRG + + IF PW+ S+  +G +F   R  T    +++  C
Sbjct: 222 LGMSYYYMLSHQENSDFLLCRGEVEDIIFSPWLKSLELQGLKFHGNRVPTSLAINKDTAC 281

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKVLNLASIDVVSVKLWFD 179
           IS +VCG+E + A A VLA G+S+LQ +IKNS  L +R+EF+ +L+L++IDVVS+KLWFD
Sbjct: 282 ISGIVCGEEVHEADAFVLANGLSSLQYIIKNSPFLQSRQEFVNLLHLSTIDVVSIKLWFD 341

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           KK+T+P V+N CSGF D   WTFFDL  IYD++ D S T+++A+FY+A+ L+PL D+Q+V
Sbjct: 342 KKITIPKVANVCSGFDDPSRWTFFDLTSIYDDYADKSTTIVEAEFYNASHLLPLNDEQIV 401

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
           ++A S+L KCI+DF  ATV+   +RR PKS  HF PGSYKY +RG T+ PNLF+AGDWI 
Sbjct: 402 SEASSHLIKCIQDFEEATVIQQLVRRSPKSTMHFLPGSYKYTVRGSTTLPNLFIAGDWIV 461

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
            RHGS+S+E++YVTGLEAANRVVDYLGDG F+KII VEEDEPHIE  R +NRR NE++ Q
Sbjct: 462 NRHGSFSKEKAYVTGLEAANRVVDYLGDGDFAKIIAVEEDEPHIETARNLNRRANELKTQ 521

Query: 360 LPLSDYFL 367
           +P S++FL
Sbjct: 522 IPFSEFFL 529

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116311132|emb|CAH68058.1| B0103C08-B0602B01.15 [Oryza sativa Indica Group]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 213/368 (57%), Positives = 286/368 (77%), Gaps = 1/368 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           MAAVIDF+NTD AW KYD+++AR+LFK FGCS++LY+ +  P +QV LFAP EQCSAAAT
Sbjct: 162 MAAVIDFNNTDTAWMKYDAMSARDLFKMFGCSQKLYKEIFQPAIQVALFAPGEQCSAAAT 221

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LG+LY+ +L+HQ+N D + CRG + + IF PW+ S+  +G +F   R  T    +++  C
Sbjct: 222 LGMLYYYMLSHQENSDFLLCRGEVEDIIFSPWLKSLELQGLKFHGNRVPTSLAINKDTAC 281

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKVLNLASIDVVSVKLWFD 179
           IS +VCG+E + A A VLA G+S+LQ +IKNS  L +R+EF+ +L+L++IDVVS+KLWFD
Sbjct: 282 ISGIVCGEEVHEADAFVLANGLSSLQYIIKNSPFLQSRQEFVNLLHLSTIDVVSIKLWFD 341

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           KK+T+P V+N CSGF D   WTFFDL  IYD++ D S T+++A+FY+A+ L+PL D+Q+V
Sbjct: 342 KKITIPKVANVCSGFDDPSGWTFFDLTSIYDDYADKSTTIVEAEFYNASHLLPLNDEQIV 401

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
           ++A S+L KCI+DF  ATV+   +RR PKS  HF PGSYKY +RG T+  NLF+AGDWI 
Sbjct: 402 SEASSHLIKCIQDFEEATVIQQLVRRSPKSTMHFLPGSYKYTVRGSTTLTNLFIAGDWIV 461

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
            RHGS+S+E++YVTGLEAANRVVDY GDG F+KII VEEDEPHIE  R +NRR NE++ Q
Sbjct: 462 NRHGSFSKEKAYVTGLEAANRVVDYFGDGDFAKIIAVEEDEPHIETARNLNRRANELKTQ 521

Query: 360 LPLSDYFL 367
           +P S++FL
Sbjct: 522 IPFSEFFL 529

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168030354|ref|XP_001767688.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681008|gb|EDQ67439.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 203/368 (55%), Positives = 279/368 (75%), Gaps = 1/368 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           M AV+DFDN++ AW  YDS +ARELF++FGCSER+Y++   P++ VGLFAP E CSAAA 
Sbjct: 165 MYAVVDFDNSNRAWEDYDSRSARELFREFGCSERVYKDAFNPMLLVGLFAPGELCSAAAC 224

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LG+LY+ ILAHQ +FD+VWCRGT+ E IF+PW+ +M+  GC FL  +RV+D   DE    
Sbjct: 225 LGMLYYFILAHQPDFDVVWCRGTVGEMIFKPWVAAMQNSGCRFLSNKRVSDLELDEATGS 284

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKVLNLASIDVVSVKLWFD 179
           ++ V+CG+E + A AV+ +VGIS +Q+++ NS +L  REEF+   NL ++D+++V+LW D
Sbjct: 285 VTGVLCGEERFPADAVIFSVGISAMQKIVPNSKVLRTREEFVNTANLGAVDILAVRLWLD 344

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           +K+ +   SNAC GF  +  WTFFDLN+++DE+KD+  TV++ADFYHAN+ +PL DDQ+V
Sbjct: 345 RKIPIKMPSNACFGFDTTTGWTFFDLNELHDEYKDEPGTVVEADFYHANQFLPLSDDQIV 404

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
            K + YL+ CI +F  A V+D  + RFPK++THFFPGSY+Y+MRG TSFPN++MAGDWI 
Sbjct: 405 KKVMDYLAVCIPEFGNANVVDQAVVRFPKAVTHFFPGSYQYLMRGTTSFPNVYMAGDWIV 464

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
            RHGSWSQE+++VTGLEAANRVVD    G  + IIPV+ DEPH++ LR VN     +  Q
Sbjct: 465 NRHGSWSQEKAFVTGLEAANRVVDQFEQGELASIIPVDADEPHVQELRRVNETAKALVKQ 524

Query: 360 LPLSDYFL 367
           LP ++YFL
Sbjct: 525 LPFANYFL 532

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302804622|ref|XP_002984063.1| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii] gi|300148415|gb|EFJ15075.1| hypothetical protein SELMODRAFT_180688 [Selaginella moellendorffii]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 205/356 (57%), Positives = 272/356 (76%), Gaps = 1/356 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           M  V+DFDN+D AWRKYD  TARELF+ +GCSER+Y++   P++ VGLFAP EQCSAAAT
Sbjct: 167 MYTVVDFDNSDRAWRKYDKTTARELFRNYGCSERVYKDAFNPMLLVGLFAPGEQCSAAAT 226

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LG+LY+ ILAHQ +FD+VWCRGT+ EKIF+PW++ +  RGC FL G++VTD   +E    
Sbjct: 227 LGMLYYFILAHQSDFDVVWCRGTVGEKIFKPWLEVLNARGCRFLSGKKVTDLTINEPTGE 286

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKVLNLASIDVVSVKLWFD 179
           +S V CG E ++A AV+ +VG++ +Q ++++S  L   EEFL + NL +ID++ V+LW D
Sbjct: 287 VSGVRCGNELFNADAVIFSVGVTAMQRIVESSPALQQSEEFLAIQNLGAIDILGVRLWLD 346

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           +KV + + SNAC GF ++  WTFFDLN ++DE+KD+  TV++ADFYHAN+ +PL D+Q+V
Sbjct: 347 RKVDINHPSNACFGFDETTGWTFFDLNALHDEYKDEKGTVVEADFYHANQFLPLSDNQIV 406

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
            K V+YL+KCI +F+ A V+D  + RF K++THF PGSY++MMRG TSFPNLFMAGDWI 
Sbjct: 407 KKVVTYLAKCIPEFAAAEVVDQAVVRFRKAVTHFSPGSYQHMMRGTTSFPNLFMAGDWII 466

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNE 355
           TRHGSWSQE++YVTGLEAAN VV  L  G  +KIIPVE DE HI  LR +N    E
Sbjct: 467 TRHGSWSQEKAYVTGLEAANNVVKLLNQGKAAKIIPVEPDEAHITELRRINTLVQE 522

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414585892|tpg|DAA36463.1| TPA: hypothetical protein ZEAMMB73_062956 [Zea mays]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/369 (56%), Positives = 284/369 (76%), Gaps = 1/369 (0%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           +AAVIDFDNTD AWRKYD++TA+ELFK +GCS+RLYR +   ++Q  LFAP EQCSAAAT
Sbjct: 159 IAAVIDFDNTDTAWRKYDAMTAKELFKMYGCSQRLYREIFELVIQAALFAPGEQCSAAAT 218

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
           LG+LY+ +L+HQ+N D + CRG + EKIF PW+ S+  +G +F++ +  T    D +  C
Sbjct: 219 LGMLYYYVLSHQENSDFLLCRGEVEEKIFSPWLQSLELKGLKFVENKVPTSLTTDVDSGC 278

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKVLNLASIDVVSVKLWFD 179
           IS +VCG + Y A A VLA+G+S+LQ ++KNS  L +  EF  +L+L+++DV+SVKLWFD
Sbjct: 279 ISSIVCGDDVYEADAFVLAMGLSSLQSIVKNSPFLRSDREFRNLLHLSTVDVISVKLWFD 338

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 239
           KK+ +P V+N CSGF DS  W FFDL  +YD++ ++S T+++A+FY+A+ L+ L DD +V
Sbjct: 339 KKIIIPKVANVCSGFDDSSGWAFFDLTSVYDDYCEESITIVEAEFYNASHLVLLSDDDIV 398

Query: 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT 299
            +A S+L KCI+DF  A V+ + IRR P S+ +F PGSYKY +RG TSFPNLF+AGDWI 
Sbjct: 399 YEASSHLIKCIQDFEGAIVIRYSIRRSPNSVINFLPGSYKYTLRGSTSFPNLFIAGDWIV 458

Query: 300 TRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 359
            RHGS+S+E++YVTGLEA NRVVDY   G F+KII VE DEPHIE LR++NRR NE+++Q
Sbjct: 459 NRHGSFSKEKAYVTGLEAGNRVVDYFDIGDFAKIIAVEGDEPHIETLRSLNRRANELKSQ 518

Query: 360 LPLSDYFLQ 368
           +P S++FLQ
Sbjct: 519 IPFSEFFLQ 527

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2129515	566	PDS3 "phytoene desaturase 3" [	0.820	0.533	0.194	2.2e-06

TAIR|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 61/313 (19%), Positives = 130/313 (41%)

Query:    18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
             D ++ +E  ++ G  ER+   V   + +   F   ++ S    L I     L  +    +
Sbjct:   240 DGLSVKEWMEKQGVPERVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 298

Query:    78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
              +  G   E++  P +D +R+ G E     R+     +++    S ++    T    A V
Sbjct:   299 AFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYV 358

Query:   138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
              A  +  L+ L+ +        F K+  L  + V++V +WFD+K+   N  +       +
Sbjct:   359 FAAPVDILKLLLPDPWK-EIPYFKKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSN 415

Query:   198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF---- 253
             L   + D++    E+ D + ++++  F  A E +   D  ++   +  L K   D     
Sbjct:   416 LLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISAD 475

Query:   254 -STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
              S A ++ + + + P+S+    P          +     ++AGD+   ++ + S E + +
Sbjct:   476 QSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 534

Query:   313 TGLEAANRVV-DY 324
             +G   +  +V DY
Sbjct:   535 SGKFCSQSIVQDY 547


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      368       368   0.00085  117 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  266 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.74u 0.11s 30.85t   Elapsed:  00:00:02
  Total cpu time:  30.74u 0.11s 30.85t   Elapsed:  00:00:02
  Start:  Mon May 20 23:39:01 2013   End:  Mon May 20 23:39:03 2013

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	1e-58
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	4e-11
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	1e-09
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	3e-08
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	6e-05
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-04
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	2e-04
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	0.002

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score =  197 bits (502), Expect = 1e-58
 Identities = 80/358 (22%), Positives = 131/358 (36%), Gaps = 17/358 (4%)

Query: 3   AVIDFDN-TDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATL 61
            + D     D + R+ D I+  +  K+ G  E  Y+    P+     F   E CSA   L
Sbjct: 131 RLGDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFL 190

Query: 62  GILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCI 121
            IL   ++   +   L   RG+  E + +PW + +  RG +      V +   D  R   
Sbjct: 191 TILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLA 250

Query: 122 S--DVVCGKETYSAGAVVLAVGISTLQELIKN--SILCNREEFLKVLNLASIDVVSVKLW 177
                          A +  V    +Q   ++  S       F  +  L  + V+++ L 
Sbjct: 251 KVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLR 310

Query: 178 FDKKVTVPNVSNACSGFGDSLAWTFFDLNKIY--------DEHKDDSATVIQADFYHANE 229
           FD  VT     N   G  D+L W+   L  +         D  +  +   ++        
Sbjct: 311 FDGWVTELTDRNQQFGI-DNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWP 369

Query: 230 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFP 289
            +   D+ +VA     L + +   + A +    +    +SL    PGSY Y     T  P
Sbjct: 370 FLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVN-QQSLYGLAPGSYHYRPEQKTPIP 428

Query: 290 NLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALR 347
           NL +AGD+        S E + ++GL AAN ++D LG  +         D      LR
Sbjct: 429 NLLLAGDYTKQP-YLGSMEGATLSGLLAANAILDNLGHHAPL-DRRDLSDPAPFGVLR 484

Length = 485

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 78/283 (27%), Positives = 117/283 (41%), Gaps = 14/283 (4%)

Query: 18  DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
           D  T  +  +  G SERL   +  PL+   L  P E+ SAA    +L    LA +   DL
Sbjct: 121 DDTTVGDWLQAHGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDL 180

Query: 78  VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
           +  R  L E   EP    + +RG E   G RV     +        V+ G+ET  A AVV
Sbjct: 181 LLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRAL-VLAGEETLPADAVV 239

Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
           LAV       L+    L        +  L    + +V L  D+ V +P       G    
Sbjct: 240 LAVPPRHAASLLPGEDL-----GALLTALGYSPITTVHLRLDRAVRLP---APMVGLVGG 291

Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTAT 257
           LA   FD  ++  E     A VI A    A +L+ L  +++  + V+ L +     + A 
Sbjct: 292 LAQWLFDRGQLAGEP-GYLAVVISA----ARDLVDLPREELADRIVAELRRAFPRVAGAK 346

Query: 258 VMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT 300
            +  ++ +  ++     PG  +      T +PNLF+AGDW  T
Sbjct: 347 PLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTAT 389

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 18/234 (7%)

Query: 99  RGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNRE 158
            G       RV       +   +        T  A AV++ V +  L+ ++    L   +
Sbjct: 217 LGGRVRLNTRVRSITKSGDGVTV--TTVDGRTIEADAVIVTVPLGVLKRILFLPPLPAAK 274

Query: 159 -EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA 217
            E ++ L   S+  V ++          ++       G S      D +      +    
Sbjct: 275 QEAIRNLGFGSVSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYVLDTSPSSGSGRGVLL 334

Query: 218 TVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGS 277
           + +  D   A EL  L D++++   +  L K +        ++  +  +      +  GS
Sbjct: 335 SYVLGD--AARELEDLSDEELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHTD--PYARGS 390

Query: 278 YKYMMRGFTS----------FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 321
           Y Y   G  S           P LF AG+  +  +     E +  +GL AA RV
Sbjct: 391 YSYPPVGDDSRYRPALRTPVGPGLFFAGEHTSGGYPGT-VEGAVESGLRAARRV 443

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 59/251 (23%), Positives = 121/251 (48%), Gaps = 16/251 (6%)

Query: 82  GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-----SAGAV 136
           G   E++ +P +D + +RG E     R+ + + +E+      V+   E       +A A 
Sbjct: 209 GAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAY 268

Query: 137 VLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKV-TVPNVSNACSGFG 195
           V A+ +   + L+          F K+  L  + V++V +WFD+K+ TV ++  + S   
Sbjct: 269 VSAMPVDIFKLLLPQP-WKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVDHLLFSRS--- 324

Query: 196 DSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKC----IK 251
             L   + D+++   E+ D   ++++  F  A + +   D++++   ++ L+K     IK
Sbjct: 325 -PLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIK 383

Query: 252 DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSY 311
             S A ++ +K+ + P+S+    PG  +Y     T  PN F+AGD+   ++ + S E + 
Sbjct: 384 ADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA-SMEGAV 442

Query: 312 VTGLEAANRVV 322
           ++G   A  +V
Sbjct: 443 LSGKLCAQAIV 453

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 69/339 (20%), Positives = 131/339 (38%), Gaps = 36/339 (10%)

Query: 3   AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 62
            ++D+D      R  D I+  E F   G S    + +  P+     F   E  SA   L 
Sbjct: 137 GLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLT 196

Query: 63  ILYFIILAHQKNFDLV-WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCI 121
           I  F++ A +     +   +G+  + + +P ++ +  RG +F    +V +  Y++     
Sbjct: 197 I--FMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGS 254

Query: 122 SDVV-------CGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV 174
           + V         GK+   A A V A  +  ++ L+        EEF  +  L ++ V +V
Sbjct: 255 TRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWR-QFEEFDNIYKLDAVPVATV 313

Query: 175 KLWFDKKVTVPNVSNA------CSGFGDSLAWT-------FFD--LNKIYDEHKDDSATV 219
           +L +D  VT              +G  D+L +T       F D  L    D +K+   ++
Sbjct: 314 QLRYDGWVTELQDLAKRKQLKRAAGL-DNLLYTADADFSCFADLALTSPDDYYKEGQGSL 372

Query: 220 IQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYK 279
           +Q      +  MP  ++++  +    +           +    + +  +SL    PG   
Sbjct: 373 LQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDP 432

Query: 280 YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 318
           +     T   N F+A        GS++Q+  Y+  +E A
Sbjct: 433 FRPDQKTPISNFFLA--------GSYTQQ-DYIDSMEGA 462

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 30/320 (9%)

Query: 14  WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK 73
           WR  D + A E  +++   E +Y     PL++      A+  SAA     +         
Sbjct: 126 WRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYS 184

Query: 74  NFDLVWCRGTLR---EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET 130
            F      G L      + +   +++  RG E   G  VT  + D     ++ V    E 
Sbjct: 185 LFGEK--LGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG--VTGVEVDGEE 240

Query: 131 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT---VPNV 187
               AV+       L  L+ +          ++     +  + +KL   + +T     N+
Sbjct: 241 EDFDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVV-CMVLKL--RRPLTDYYWLNI 297

Query: 188 SNACSGFGDSLAWT-FFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVS 244
           ++  + FG  +  T      +   EH      ++    Y    + L  + D++++ + +S
Sbjct: 298 NDPGAPFGGVIEHTNLVPPERYGGEH------LVYLPKYLPGDHPLWQMSDEELLDRFLS 351

Query: 245 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHG 303
           YL K   DF    V   +I R P +   + PG Y   +  + T    L++AG    ++  
Sbjct: 352 YLRKMFPDFDRDDVRAVRISRAPYAQPIYEPG-YLDKIPPYDTPIEGLYLAG---MSQ-- 405

Query: 304 SWSQERSYVTGLEAANRVVD 323
            + ++RS    + A  RV  
Sbjct: 406 IYPEDRSINGSVRAGRRVAR 425

Length = 434

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 26/215 (12%)

Query: 128 KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT---- 183
           KE   A A V A  +  ++ L+        E F  +  L  + VV+V+L ++  VT    
Sbjct: 344 KEIVKADAYVAACDVPGIKRLLPEQWR-EYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQD 402

Query: 184 VPNVSNACSGFG-DSLAWT-------FFDL--NKIYDEHKDDSATVIQADFYHANELMPL 233
           +          G D+L ++       F DL      D +K+   ++IQA     +  MPL
Sbjct: 403 LELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPL 462

Query: 234 KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFM 293
            +D++V K    + +         V    + +  +SL    PG   +     T   N F+
Sbjct: 463 SNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFL 522

Query: 294 AG-----DWITTRHGSWSQERSYVTGLEAANRVVD 323
           AG     D+I       S E + ++G +AA  + +
Sbjct: 523 AGSYTKQDYID------SMEGATLSGRQAAAYICE 551

Length = 569

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 48/250 (19%), Positives = 107/250 (42%), Gaps = 20/250 (8%)

Query: 86  EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145
           E++  P +D  ++ G E     R+     +++      ++           V A  +  L
Sbjct: 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDIL 367

Query: 146 QELIKNSILCNREE---FLKVLNLASIDVVSVKLWFDKKV--TVPNVSNACSGFGDSLAW 200
           + L+ +      +E   F K+  L  + V++V +WFD+K+  T  ++  + S     L  
Sbjct: 368 KLLLPD----QWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRS----PLLS 419

Query: 201 TFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-----KDFST 255
            + D++    E+ D + ++++  F  A E +   D+ ++   +  L+K        D S 
Sbjct: 420 VYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSK 479

Query: 256 ATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGL 315
           A ++ + + + P+S+    P          +     ++AGD+   ++ + S E + ++G 
Sbjct: 480 AKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVLSGK 538

Query: 316 EAANRVV-DY 324
             A  +V DY
Sbjct: 539 LCAQSIVQDY 548

Length = 567

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
PLN02487	569	zeta-carotene desaturase	100.0
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	100.0
PLN02612	567	phytoene desaturase	100.0
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	100.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	100.0
PRK07233	434	hypothetical protein; Provisional	99.97
PRK07208	479	hypothetical protein; Provisional	99.93
COG3349	485	Uncharacterized conserved protein [Function unknow	99.93
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.93
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.92
PLN02576	496	protoporphyrinogen oxidase	99.92
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.92
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.91
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.9
PLN02268	435	probable polyamine oxidase	99.89
PLN02529	738	lysine-specific histone demethylase 1	99.89
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.89
PLN03000	881	amine oxidase	99.87
PLN02676	487	polyamine oxidase	99.87
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.87
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.86
PLN02568	539	polyamine oxidase	99.86
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.86
PLN02976	1713	amine oxidase	99.83
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.78
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.75
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.68
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.64
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.63
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.6
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.55
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.43
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.38
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.97
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.79
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.57
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.42
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.41
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	98.3
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	98.3
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.11
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.05
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.02
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.98
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.87
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.72
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.59
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.51
PRK10157	428	putative oxidoreductase FixC; Provisional	97.41
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.38
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.34
PRK10015	429	oxidoreductase; Provisional	97.3
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.27
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.23
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.22
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.16
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.15
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.04
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.8
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.76
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.7
PLN02697	529	lycopene epsilon cyclase	96.67
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.66
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.65
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.65
COG2081	408	Predicted flavoproteins [General function predicti	96.59
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.49
PRK06847	375	hypothetical protein; Provisional	96.47
PRK06185	407	hypothetical protein; Provisional	96.46
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	96.45
PTZ00383	497	malate:quinone oxidoreductase; Provisional	96.37
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.37
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.36
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	96.35
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	96.35
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.27
COG0579	429	Predicted dehydrogenase [General function predicti	96.24
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	96.13
PRK08274	466	tricarballylate dehydrogenase; Validated	96.12
PRK07045	388	putative monooxygenase; Reviewed	96.04
PLN02463	447	lycopene beta cyclase	95.98
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	95.87
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.86
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	95.82
KOG2852	380	consensus Possible oxidoreductase [General functio	95.8
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.79
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.7
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.67
PRK07121	492	hypothetical protein; Validated	95.59
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	95.52
TIGR00275	400	flavoprotein, HI0933 family. The model when search	95.47
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.39
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.33
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.29
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	95.23
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.19
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	95.17
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	95.15
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.15
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	95.11
PRK07588	391	hypothetical protein; Provisional	95.07
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	95.0
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	94.87
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	94.86
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	94.83
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.81
PRK06175	433	L-aspartate oxidase; Provisional	94.72
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	94.7
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	94.67
PRK05257	494	malate:quinone oxidoreductase; Validated	94.66
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.66
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	94.56
PRK08244	493	hypothetical protein; Provisional	94.51
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	94.39
PRK08401	466	L-aspartate oxidase; Provisional	94.23
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	94.22
PRK12842	574	putative succinate dehydrogenase; Reviewed	94.21
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.05
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.02
PRK12839	572	hypothetical protein; Provisional	94.01
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	94.0
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	93.98
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	93.93
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	93.91
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	93.9
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	93.87
PRK06116	450	glutathione reductase; Validated	93.64
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.64
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	93.57
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	93.49
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	93.41
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	93.37
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	93.35
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	93.28
PRK07512	513	L-aspartate oxidase; Provisional	93.27
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	93.24
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	93.22
PRK08275	554	putative oxidoreductase; Provisional	93.16
PRK13339	497	malate:quinone oxidoreductase; Reviewed	93.15
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.09
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	92.95
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	92.87
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.87
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	92.8
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	92.79
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.73
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	92.59
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.43
PRK07395	553	L-aspartate oxidase; Provisional	92.36
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	92.34
PLN02507	499	glutathione reductase	92.19
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	92.19
PRK07804	541	L-aspartate oxidase; Provisional	92.11
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	92.07
PRK14694	468	putative mercuric reductase; Provisional	91.91
PRK08071	510	L-aspartate oxidase; Provisional	91.85
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.83
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.8
PRK07190	487	hypothetical protein; Provisional	91.67
PRK06126	545	hypothetical protein; Provisional	91.5
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	91.47
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	91.4
PRK14727	479	putative mercuric reductase; Provisional	91.33
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	91.19
PRK07845	466	flavoprotein disulfide reductase; Reviewed	91.19
PRK06834	488	hypothetical protein; Provisional	91.1
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	91.01
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.91
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.85
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	90.82
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	90.79
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	90.76
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	90.48
PRK13748	561	putative mercuric reductase; Provisional	90.01
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	89.94
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	89.72
PRK08163	396	salicylate hydroxylase; Provisional	89.68
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	89.66
PRK06184	502	hypothetical protein; Provisional	89.64
PRK09897	534	hypothetical protein; Provisional	89.59
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	89.54
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	89.3
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	89.02
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	88.93
PRK06370	463	mercuric reductase; Validated	88.87
PTZ00052	499	thioredoxin reductase; Provisional	88.86
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	88.86
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	88.75
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	88.7
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	88.65
PTZ00058	561	glutathione reductase; Provisional	88.61
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	88.52
PLN02815	594	L-aspartate oxidase	88.46
TIGR02053	463	MerA mercuric reductase. This model represents the	88.19
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	88.15
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	88.14
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	88.04
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	88.03
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	88.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	87.76
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	87.66
PRK09077	536	L-aspartate oxidase; Provisional	87.14
PRK08132	547	FAD-dependent oxidoreductase; Provisional	87.01
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	86.97
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	86.72
PRK10262	321	thioredoxin reductase; Provisional	86.69
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	86.43
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	86.43
PRK02106	560	choline dehydrogenase; Validated	86.2
PLN02985	514	squalene monooxygenase	85.9
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	85.88
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	85.87
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	85.79
PRK09126	392	hypothetical protein; Provisional	85.76
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	85.53
PLN02661	357	Putative thiazole synthesis	84.98
PLN02546	558	glutathione reductase	84.93
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	84.76
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	84.56
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	84.53
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	84.52
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	84.51
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	84.27
KOG2853	509	consensus Possible oxidoreductase [General functio	84.17
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	84.03
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	83.65
PRK08013	400	oxidoreductase; Provisional	83.62
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	83.6
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	83.52
PRK07846	451	mycothione reductase; Reviewed	82.97
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	82.96
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	82.54
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	82.52
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	82.16
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	82.02
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	82.01
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	81.79
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	81.31
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	81.26
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	81.22
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	81.06
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	80.98
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	80.76
PRK12831	464	putative oxidoreductase; Provisional	80.63
PRK11445	351	putative oxidoreductase; Provisional	80.62
PRK13512	438	coenzyme A disulfide reductase; Provisional	80.05

>PLN02487 zeta-carotene desaturase

Probab=100.00  E-value=6.5e-38  Score=308.26  Aligned_cols=313  Identities=20%  Similarity=0.252  Sum_probs=253.1

Q ss_pred             chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhH
Q 017658           11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFE   90 (368)
Q Consensus        11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~   90 (368)
                      .+.|..+|++|+.+|+++++.+++++++||+|++.+.++++++++|+..++..|..+. ...+++++.|++||+++.|++
T Consensus       221 ~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~  299 (569)
T PLN02487        221 MRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSG  299 (569)
T ss_pred             ccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHH
Confidence            4557788999999999998888889999999999999999999999999999886543 344456788999998767999


Q ss_pred             HHHHHHHHcCCEEeccceeeeEEecCC-Cc--eEEEEEE--C--CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhh
Q 017658           91 PWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV  163 (368)
Q Consensus        91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~-~g--~v~~v~~--~--g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i  163 (368)
                      ++++.|+++|++|+++++|++|..+++ +|  +|++|++  +  ++.+.+|.||+|+|++.+.+|+++.. +..++++++
T Consensus       300 pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~-~~~~~~~~l  378 (569)
T PLN02487        300 PIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQW-REYEFFDNI  378 (569)
T ss_pred             HHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchh-hccHHHhHH
Confidence            999999999999999999999999742 13  4788888  3  34689999999999999999998762 223457788


Q ss_pred             hccCccceEEEEEEecCCCCCCCCCc------eeecCCC-----Ccccee-eecccccc-cc-CCCCCeEEEEEeecCCC
Q 017658          164 LNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFGD-----SLAWTF-FDLNKIYD-EH-KDDSATVIQADFYHANE  229 (368)
Q Consensus       164 ~~l~~~~~~~v~l~~~~~~~~~~~~~------~~~~~~~-----~~~~~~-~d~s~~~~-~~-~~~~~~v~~~~~~~~~~  229 (368)
                      ..+.+.++++++|+||+++..+.+.+      -+.+++.     ...|.+ .|.+-..+ ++ .+..++++.++++++++
T Consensus       379 ~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~  458 (569)
T PLN02487        379 YKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDP  458 (569)
T ss_pred             hcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCcc
Confidence            89988999999999998865432111      0222221     112322 24221111 12 22346788888888888


Q ss_pred             CCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchH
Q 017658          230 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQER  309 (368)
Q Consensus       230 ~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~eg  309 (368)
                      +.+++++++++.++++|.++||...+.++.+..+.+.+++.+.+.||....||.+.|+++|||+||||+.++|| .+|||
T Consensus       459 ~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP-at~Eg  537 (569)
T PLN02487        459 YMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI-DSMEG  537 (569)
T ss_pred             ccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc-chHHH
Confidence            88999999999999999999999876668888888899999999999988889999999999999999999999 79999


Q ss_pred             HhHHHHHHHHHHHHHhC
Q 017658          310 SYVTGLEAANRVVDYLG  326 (368)
Q Consensus       310 A~~Sg~~aA~~Il~~~~  326 (368)
                      |+.||..||+.|+++.+
T Consensus       538 Av~SG~~AA~~i~~~~~  554 (569)
T PLN02487        538 ATLSGRQAAAYICEAGE  554 (569)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999998875

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=100.00  E-value=1.6e-35  Score=289.13  Aligned_cols=309  Identities=19%  Similarity=0.260  Sum_probs=242.1

Q ss_pred             chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhH
Q 017658           11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFE   90 (368)
Q Consensus        11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~   90 (368)
                      .+.|..++++|+.+|+++++.++.++++||+|++.+.++.+++++|+..++..++.+. ....++...+++||+++.+.+
T Consensus       145 ~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s~~~~~~g~~~~~l~~  223 (474)
T TIGR02732       145 MKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEASKLRMLKGSPDKYLTK  223 (474)
T ss_pred             hhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcceeeeecCCcchhHHH
Confidence            3556778999999999998888888999999999999999999999999988877544 334566778889998877899


Q ss_pred             HHHHHHHHcCCEEeccceeeeEEecCC-Cc--eEEEEEEC-C---eEEecCEEEEeeChhhHHHhhhhccccCchhHHhh
Q 017658           91 PWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVCG-K---ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV  163 (368)
Q Consensus        91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~-~g--~v~~v~~~-g---~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i  163 (368)
                      +|.+.|+++|++|+++++|++|..+++ ++  +|++|.++ |   +++.||+||+|+|++.+.+|+++.. ...+....+
T Consensus       224 pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~-~~~~~~~~l  302 (474)
T TIGR02732       224 PILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEW-RQFEEFDNI  302 (474)
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhh-hcCHHHhhH
Confidence            999999999999999999999998641 12  37777774 3   4689999999999999999998742 123456677


Q ss_pred             hccCccceEEEEEEecCCCCCCCCCce------eecCC-----CCcccee-eecccccc-ccC-CCCCeEEEEEeecCCC
Q 017658          164 LNLASIDVVSVKLWFDKKVTVPNVSNA------CSGFG-----DSLAWTF-FDLNKIYD-EHK-DDSATVIQADFYHANE  229 (368)
Q Consensus       164 ~~l~~~~~~~v~l~~~~~~~~~~~~~~------~~~~~-----~~~~~~~-~d~s~~~~-~~~-~~~~~v~~~~~~~~~~  229 (368)
                      ..+.+.++.+++++|++++..+.+.+.      +.+.+     ....|.+ .|.+-..+ .|. +..+.++.++.+.+.+
T Consensus       303 ~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  382 (474)
T TIGR02732       303 YKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDP  382 (474)
T ss_pred             hcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhh
Confidence            888889999999999987654321110      01111     1112322 23221112 232 1234556666676667


Q ss_pred             CCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchH
Q 017658          230 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQER  309 (368)
Q Consensus       230 ~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~eg  309 (368)
                      +.+++++++++.++++|+++||...+.++.+..+.+.+++.+.+.||....+|.+.|+++|||+||||+.++|| ++|||
T Consensus       383 ~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p-as~eg  461 (474)
T TIGR02732       383 WMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI-DSMEG  461 (474)
T ss_pred             hcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch-HHHhH
Confidence            77899999999999999999998776678888888899999999999988899999999999999999999999 79999


Q ss_pred             HhHHHHHHHHHHH
Q 017658          310 SYVTGLEAANRVV  322 (368)
Q Consensus       310 A~~Sg~~aA~~Il  322 (368)
                      |+.||+.||+.|+
T Consensus       462 Av~sG~~aA~~i~  474 (474)
T TIGR02732       462 ATLSGRQAAAAIL  474 (474)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999874

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=100.00  E-value=6.3e-35  Score=290.13  Aligned_cols=308  Identities=17%  Similarity=0.256  Sum_probs=245.4

Q ss_pred             hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHH
Q 017658           14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM   93 (368)
Q Consensus        14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~   93 (368)
                      +.++|++|+.||+++.++++.+.+.++++++.+.++.+++++|+..++..+..+ +....++.+.+++|++.+.|+++|+
T Consensus       237 ~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~~~~~~G~~~~~l~~~l~  315 (567)
T PLN02612        237 VEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKMAFLDGNPPERLCMPIV  315 (567)
T ss_pred             hhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCceEeeecCCchHHHHHHHH
Confidence            357889999999999999999999999999999999999999999998877765 3444566777888886578999999


Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceE
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVV  172 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~  172 (368)
                      +.|+++|++|++|++|++|..+++ +++++|++. |+++.||+||+|+|+..+..|++.... +.++.+.+..+.+.+++
T Consensus       316 ~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~~~~~~~l~~l~~~~v~  393 (567)
T PLN02612        316 DHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-EIPYFKKLDKLVGVPVI  393 (567)
T ss_pred             HHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-CcHHHHHHHhcCCCCeE
Confidence            999999999999999999998765 666667764 778999999999999999988876432 23556677778888899


Q ss_pred             EEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhccC
Q 017658          173 SVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD  252 (368)
Q Consensus       173 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~  252 (368)
                      +++++|+++++.+.. ..+++.. .....+.+++..++.+.+++.+++.+++..+.+|.+++++++++.++++|+++||+
T Consensus       394 ~v~l~~dr~~~~~~~-~~~~~~~-~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~  471 (567)
T PLN02612        394 NVHIWFDRKLKNTYD-HLLFSRS-PLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPD  471 (567)
T ss_pred             EEEEEECcccCCCCC-ceeecCC-CCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCc
Confidence            999999999753322 2222211 11122345554444454455677766666667788899999999999999999997


Q ss_pred             CC-----CCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          253 FS-----TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       253 ~~-----~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                      ..     ..+++...+.+.|.+++.+.|+....+|.+.+|++||||||||+.++|+ ++||||+.||++||+.|+++++.
T Consensus       472 ~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~-~smeGAv~SG~~AA~~I~~~~~~  550 (567)
T PLN02612        472 EISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL-ASMEGAVLSGKLCAQSIVQDYEL  550 (567)
T ss_pred             ccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence            62     1345666666788888877888777788888999999999999998898 79999999999999999999875

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=100.00  E-value=2.4e-31  Score=257.09  Aligned_cols=293  Identities=27%  Similarity=0.332  Sum_probs=220.7

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD   94 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~   94 (368)
                      ..++++|+.+|++++++++++++.+++|++.++++.+++++|+..++..+...+........+.|++||+++.+.++|++
T Consensus       126 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~  205 (419)
T TIGR03467       126 RALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARR  205 (419)
T ss_pred             cccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHH
Confidence            35789999999999888999999999999999999999999999888877654323323345678899976655677999


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEE-ECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEE
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVS  173 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~-~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~  173 (368)
                      .|+++|++|++|++|++|..++  ++++.+. .+|+++.||+||+|+|++++.+|+++.     ...+.+..+++.++.+
T Consensus       206 ~l~~~g~~i~~~~~V~~i~~~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~~~l~~~~~~~~~~  278 (419)
T TIGR03467       206 WLDSRGGEVRLGTRVRSIEANA--GGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLGALLTALGYSPITT  278 (419)
T ss_pred             HHHHcCCEEEcCCeeeEEEEcC--CcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHHHHHhhcCCcceEE
Confidence            9999999999999999999887  4444333 357789999999999999999997652     2345677888888889


Q ss_pred             EEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhccCC
Q 017658          174 VKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF  253 (368)
Q Consensus       174 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~~  253 (368)
                      +++.++++++.+.+...+.  .....|. ++.+..    . +...++.+......++.+++++++++.++++|+++||..
T Consensus       279 v~l~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~  350 (419)
T TIGR03467       279 VHLRLDRAVRLPAPMVGLV--GGLAQWL-FDRGQL----A-GEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRV  350 (419)
T ss_pred             EEEEeCCCcCCCCCeeeec--CCceeEE-EECCcC----C-CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCcc
Confidence            9999999876443322221  1223342 332211    1 122333333334455677899999999999999999976


Q ss_pred             CCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017658          254 STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  323 (368)
Q Consensus       254 ~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~  323 (368)
                      ....+++..+.+|.++.+.+.||....+|...++.+|||||||+++++++ ++||||+.||.+||+.|++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~-~~~egA~~SG~~aA~~i~~  419 (419)
T TIGR03467       351 AGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWP-ATMEGAVRSGYQAAEAVLK  419 (419)
T ss_pred             ccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCc-chHHHHHHHHHHHHHHHhC
Confidence            43346666677787777777777655567666788999999999998888 7999999999999999874

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=100.00  E-value=2.1e-31  Score=260.06  Aligned_cols=302  Identities=22%  Similarity=0.344  Sum_probs=226.8

Q ss_pred             hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHH
Q 017658           14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM   93 (368)
Q Consensus        14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~   93 (368)
                      +.++|++|+.+|+++.++++.+.+.+++|++.++++.+|+++|+..++..+..++ ....+....+.+|+.+..|+++|.
T Consensus       142 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~~~~g~~~~~l~~~l~  220 (453)
T TIGR02731       142 VEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKMAFLDGAPPERLCQPIV  220 (453)
T ss_pred             hhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCeeEeecCCChHHHHHHHH
Confidence            3567999999999999999999999999999999999999999999988877654 322334445566665567999999


Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce-----EEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccC
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA  167 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~-----~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~  167 (368)
                      +.++++|++|++|++|++|..+++ |+|++|++. |+     ++.||.||+|+|++.+.+|++... +...+.+.+..++
T Consensus       221 ~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~-~~~~~~~~~~~~~  298 (453)
T TIGR02731       221 DYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPW-KQMPFFQKLNGLE  298 (453)
T ss_pred             HHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhh-hcCHHHHHhhcCC
Confidence            999999999999999999987654 667777774 44     789999999999999989986541 1134556677777


Q ss_pred             ccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHh
Q 017658          168 SIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLS  247 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~  247 (368)
                      +.++.+++++++++++.. . ..++..+... ....+.+.....+.+++++++.+.+.....+.+++++++++.++++|+
T Consensus       299 ~~~~~~v~l~~~~~~~~~-~-~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~  375 (453)
T TIGR02731       299 GVPVINVHIWFDRKLTTV-D-HLLFSRSPLL-SVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELA  375 (453)
T ss_pred             CCcEEEEEEEEccccCCC-C-ceeeeCCCcc-eeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHH
Confidence            888999999999987532 1 1122211111 111222222122222445666654444556777899999999999999


Q ss_pred             hhccCC----CCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHH
Q 017658          248 KCIKDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  322 (368)
Q Consensus       248 ~~~p~~----~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il  322 (368)
                      ++||+.    ...++++..+.+.+++.+.+.||....+|...+|++||||||++++.+|+ ++||||+.||..||+.|+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~-g~~egAi~SG~~AA~~v~  453 (453)
T TIGR02731       376 KLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYL-ASMEGAVLSGKLCAQAIV  453 (453)
T ss_pred             HhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccc-ccHHHHHHHHHHHHHHhC
Confidence            999853    12346666777788887767788655677778899999999999998898 799999999999999873

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07233 hypothetical protein; Provisional

Probab=99.97  E-value=2e-28  Score=237.84  Aligned_cols=302  Identities=19%  Similarity=0.225  Sum_probs=221.1

Q ss_pred             hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcC--CCcceeeecCCcchhhhHH
Q 017658           14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEP   91 (368)
Q Consensus        14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~GG~~~~L~~~   91 (368)
                      +.+++++|+++|+++. .+++.++.+++|++...++.+++++|+..++..+........  ......+++||+ +.|+++
T Consensus       126 ~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~  203 (434)
T PRK07233        126 WRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDA  203 (434)
T ss_pred             ccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHH
Confidence            3567899999999985 578888899999999999999999999887766654321111  122356889995 689999


Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccce
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV  171 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~  171 (368)
                      |.+.+++.|++|+++++|++|..++  ++++.+..++++++||+||+|+|+..+.+++++..   ....+.+..+.+.+.
T Consensus       204 l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~~~~~~~~~~~~  278 (434)
T PRK07233        204 LAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVLARLRRIDYQGV  278 (434)
T ss_pred             HHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHHhhhcccCccce
Confidence            9999999999999999999999876  55666666678999999999999999999885421   334556777888888


Q ss_pred             EEEEEEecCCCCCCCCCceee-cCCCCccceeeeccccccccCCCCCeEEEEEee-cC-CCCCCCCHHHHHHHHHHHHhh
Q 017658          172 VSVKLWFDKKVTVPNVSNACS-GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-HA-NELMPLKDDQVVAKAVSYLSK  248 (368)
Q Consensus       172 ~~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~-~~~~~~~~~e~~~~~~~~l~~  248 (368)
                      +++++++++++..  .+.... ..+..... ++..++..+...+++.+++.+..+ .. .++..++++++++.+++.|++
T Consensus       279 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  355 (434)
T PRK07233        279 VCMVLKLRRPLTD--YYWLNINDPGAPFGG-VIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRK  355 (434)
T ss_pred             EEEEEEecCCCCC--CceeeecCCCCCcce-EEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHH
Confidence            8889999887542  111111 11111112 233333322222134444333323 22 223456889999999999999


Q ss_pred             hccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          249 CIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       249 ~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ++|++...++++..+.+|+++.+.+.||....+|...++.+|||||||+....++ ++|++|+.||+.||+.|++.++
T Consensus       356 ~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~~Ai~sG~~aA~~i~~~~~  432 (434)
T PRK07233        356 MFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPED-RSINGSVRAGRRVAREILEDRR  432 (434)
T ss_pred             hCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCcc-CchhHHHHHHHHHHHHHhhhhc
Confidence            9998765467788888899998888888666677777889999999996543344 5899999999999999998875

>PRK07208 hypothetical protein; Provisional

Probab=99.93  E-value=4.5e-24  Score=209.96  Aligned_cols=310  Identities=16%  Similarity=0.144  Sum_probs=211.8

Q ss_pred             cCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHH---------HHHHHhh------------cCCCcc
Q 017658           18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILA------------HQKNFD   76 (368)
Q Consensus        18 d~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~---------l~~~~~~------------~~~~~~   76 (368)
                      +++|+.+|+++ .+++++++.+++|++...|+.+++++|+.+++..         +...+..            ......
T Consensus       131 ~~~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (479)
T PRK07208        131 EEDSFEDWVIN-RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEE  209 (479)
T ss_pred             CCCCHHHHHHH-hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeE
Confidence            67999999997 6899999999999999999999999999865432         2211111            000124


Q ss_pred             eeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhhHHHhhhh
Q 017658           77 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        77 ~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      +.+++||++ .|+++|++.+++.|++|++|++|++|..+++ +.++.+..+   |+  ++.||+||+|+|+..+.+++.+
T Consensus       210 ~~~p~gG~~-~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~  287 (479)
T PRK07208        210 FRYPKLGPG-QLWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDP  287 (479)
T ss_pred             EeCCCCCcc-hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCC
Confidence            567899974 7999999999999999999999999998874 444445442   32  5899999999999999988764


Q ss_pred             ccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCC-eEEEEEee--cCC
Q 017658          152 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFY--HAN  228 (368)
Q Consensus       152 ~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~-~v~~~~~~--~~~  228 (368)
                      . ++ ....+.+..+.+.++.+++++++++...+..+..+.+..... ..+...++..+...+++. ..+...++  ..+
T Consensus       288 ~-~~-~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~  364 (479)
T PRK07208        288 P-PP-PEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKV-GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGD  364 (479)
T ss_pred             C-CC-HHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCcc-ceecccccCCcccCCCCCceEEEEEEEccCCC
Confidence            3 22 345566677888888889999988743222111111111000 001111111122222233 33333232  233


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCC---CCCCCCceEEeccccccCCCCc
Q 017658          229 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFPNLFMAGDWITTRHGSW  305 (368)
Q Consensus       229 ~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~---~~~~~~~L~laGd~~~~~~~~~  305 (368)
                      ...+++++++++.++++|.++.+ +.+..++...+.+|++++|.|.+++....+.   ..++.+|||++|++....|  .
T Consensus       365 ~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~--~  441 (479)
T PRK07208        365 DLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY--N  441 (479)
T ss_pred             ccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc--C
Confidence            44468899999999999999854 3334688888889999999998876533221   2256799999998875444  4


Q ss_pred             cchHHhHHHHHHHHHHHHHhCCCCccccccCCCC
Q 017658          306 SQERSYVTGLEAANRVVDYLGDGSFSKIIPVEED  339 (368)
Q Consensus       306 ~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~  339 (368)
                      +|++|+.||..+|+.|++.-   ....+||++.|
T Consensus       442 ~~d~a~~sg~~~a~~i~~~~---~~~~~~~~~~~  472 (479)
T PRK07208        442 NQDHSMLTAMLAVENIIAGE---TKHDIWQVNTE  472 (479)
T ss_pred             ChhHHHHHHHHHHHHHhcCC---ccCCceEeccc
Confidence            89999999999999998884   22457776554

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=4.9e-25  Score=208.05  Aligned_cols=334  Identities=23%  Similarity=0.275  Sum_probs=253.7

Q ss_pred             CchhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhh
Q 017658           10 TDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF   89 (368)
Q Consensus        10 ~~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~   89 (368)
                      .++.++++|++|++|||++.+.+...++..|.|+.....+.+++.+|+..++.++..++....++.....++|+..+.+.
T Consensus       139 ~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~  218 (485)
T COG3349         139 ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLL  218 (485)
T ss_pred             hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceee
Confidence            37889999999999999999999999999999999999999999999999998888776555466666677899899999


Q ss_pred             HHHHHHHHHcCCEEeccceeeeEEecCC--CceEEEEEECCe---EEecCEEEEeeChhhHHHhhhhccccCchhHHhhh
Q 017658           90 EPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL  164 (368)
Q Consensus        90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~g~v~~v~~~g~---~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~  164 (368)
                      .++.+++.+.|.++++..+|++|..+..  +.+++++.+.+.   ...++.|+.+...+.+..+++..+. +....+.+.
T Consensus       219 ~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~-~~~~f~~ly  297 (485)
T COG3349         219 QPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWP-KWSNFDGLY  297 (485)
T ss_pred             ehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccccc-ccccccccc
Confidence            9999999999999999999999998752  145788777643   4677888888888888888887642 245567888


Q ss_pred             ccCccceEEEEEEecCCCCCCCCCceeec------CCCCccceeeeccccccccCCCC-CeEEEEEeecCCCCCCCCHHH
Q 017658          165 NLASIDVVSVKLWFDKKVTVPNVSNACSG------FGDSLAWTFFDLNKIYDEHKDDS-ATVIQADFYHANELMPLKDDQ  237 (368)
Q Consensus       165 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~s~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~e  237 (368)
                      .++..|+++++++++...+.....+..+.      .+.+....+.++...++.+..++ ++.+.....+...|...++++
T Consensus       298 ~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~  377 (485)
T COG3349         298 GLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEA  377 (485)
T ss_pred             cccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhh
Confidence            88889999999999865432222110000      11122223445444443443222 233333345666777788999


Q ss_pred             HHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHH
Q 017658          238 VVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEA  317 (368)
Q Consensus       238 ~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~a  317 (368)
                      +...+.+.+...+|....++ ......+.+++++..+||+..+||.++|+++|++++|||+...+ +++||+|..||+.|
T Consensus       378 ~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~-~~smE~A~~sGl~A  455 (485)
T COG3349         378 IVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPY-LGSMEGATLSGLLA  455 (485)
T ss_pred             HHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCC-cCccchhhhhHHHH
Confidence            99999999999999876655 44555568899999999999999999999999999999997654 48999999999999


Q ss_pred             HHHHHHHhCCCCccccccCCCCchhHHHHH
Q 017658          318 ANRVVDYLGDGSFSKIIPVEEDEPHIEALR  347 (368)
Q Consensus       318 A~~Il~~~~~~~~~~~~~~~~~~~~~~~~~  347 (368)
                      |+.|+..+....+ -......+.+++.+.+
T Consensus       456 A~~v~~~~~~~~~-~~~~~~~~~~~~~vl~  484 (485)
T COG3349         456 ANAILDNLGHHAP-LDRRDLSDPAPFGVLR  484 (485)
T ss_pred             HHHHHHhhhhcCc-cccccccCcCchhhcc
Confidence            9999998886233 2233334555555543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.93  E-value=1.4e-23  Score=205.56  Aligned_cols=291  Identities=14%  Similarity=0.190  Sum_probs=204.9

Q ss_pred             cCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH----------Hhhc---C-----------C
Q 017658           18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI----------ILAH---Q-----------K   73 (368)
Q Consensus        18 d~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~----------~~~~---~-----------~   73 (368)
                      .++|+.||+++ .+++++.+.+++|++.+.|+.+++++|+..+...+...          +...   .           .
T Consensus       135 ~d~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  213 (462)
T TIGR00562       135 KDESVEEFVRR-RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQ  213 (462)
T ss_pred             CCcCHHHHHHH-hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccccccccc
Confidence            45999999997 58899999999999999999999999998766443211          0000   0           0


Q ss_pred             CcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhc
Q 017658           74 NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNS  152 (368)
Q Consensus        74 ~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~  152 (368)
                      +..+..+.||+ ++|+++|++.+..  ++|+++++|++|..++  +++ .|+++ |++++||+||+|+|++++..|+++.
T Consensus       214 ~~~~~~~~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~  287 (462)
T TIGR00562       214 GQDFQTLATGL-ETLPEEIEKRLKL--TKVYKGTKVTKLSHRG--SNY-TLELDNGVTVETDSVVVTAPHKAAAGLLSEL  287 (462)
T ss_pred             CCceEecchhH-HHHHHHHHHHhcc--CeEEcCCeEEEEEecC--CcE-EEEECCCcEEEcCEEEECCCHHHHHHHhccc
Confidence            11134467896 5799999988862  7899999999999876  444 36655 6689999999999999999998753


Q ss_pred             cccCchhHHhhhccCccceEEEEEEecCCCCCCC-C-CceeecCCC---CccceeeeccccccccCCCCCeEEEEEee--
Q 017658          153 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-V-SNACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFY--  225 (368)
Q Consensus       153 ~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~-~-~~~~~~~~~---~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--  225 (368)
                         +....+.+..+.+.++.++.+.|+++.+... . +..+.....   ...+ +++.+ ..+...+++.+++.....  
T Consensus       288 ---~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~s~-~~p~~~p~g~~~l~~~~~g~  362 (462)
T TIGR00562       288 ---SNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFTSK-LFPNRAPPGKTLLTAYIGGA  362 (462)
T ss_pred             ---CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEEcc-ccCCcCCCCcEEEEEEeCCC
Confidence               2445677888999999999999987654221 1 111111111   1123 33322 223223234445433222  


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCC----CCCCCCceEEeccccccC
Q 017658          226 HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTSFPNLFMAGDWITTR  301 (368)
Q Consensus       226 ~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~----~~~~~~~L~laGd~~~~~  301 (368)
                      ....+.+++++++++.+++.|.++++ ++. ++....+.+|++++|.+.+|.....+.    .....+|||+||+|..  
T Consensus       363 ~~~~~~~~~~ee~~~~v~~~L~~~~g-i~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~--  438 (462)
T TIGR00562       363 TDESIVDLSENEIINIVLRDLKKVLN-INN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFE--  438 (462)
T ss_pred             CCccccCCCHHHHHHHHHHHHHHHhC-CCC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccC--
Confidence            22345678899999999999999996 443 367778889999999999886433222    1234579999999985  


Q ss_pred             CCCccchHHhHHHHHHHHHHHHHhC
Q 017658          302 HGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       302 ~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                       + .++++|+.||+.+|++|++.+.
T Consensus       439 -g-~~i~~~i~sg~~~a~~~~~~~~  461 (462)
T TIGR00562       439 -G-VGIPDCIDQGKAAASDVLTFLF  461 (462)
T ss_pred             -C-CcHHHHHHHHHHHHHHHHHhhc
Confidence             2 4789999999999999988764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.92  E-value=2.8e-23  Score=203.45  Aligned_cols=290  Identities=14%  Similarity=0.151  Sum_probs=199.5

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hhc------CCCcceeee
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH------QKNFDLVWC   80 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~------~~~~~~~~~   80 (368)
                      ++++|+.+|+++ ++++++.+++++|++.+.|+.+++++|+...+..+..+.          ..+      .....+.++
T Consensus       143 ~~~~sv~~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  221 (463)
T PRK12416        143 TKDTSLALFLES-FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSF  221 (463)
T ss_pred             CCCCCHHHHHHH-hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEee
Confidence            478999999997 688999999999999999999999999876444432211          000      112234567


Q ss_pred             cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchh
Q 017658           81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREE  159 (368)
Q Consensus        81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~  159 (368)
                      +||| .+|+++|++.+++  ++|+++++|++|..++  +++ .|.+. |+++.||+||+|+|++++.+|++++.+     
T Consensus       222 ~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l-----  290 (463)
T PRK12416        222 KGGL-STIIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRY-EISFANHESIQADYVVLAAPHDIAETLLQSNEL-----  290 (463)
T ss_pred             CCCH-HHHHHHHHHhccc--ccEEcCCEEEEEEEcC--CEE-EEEECCCCEEEeCEEEECCCHHHHHhhcCCcch-----
Confidence            8997 5799999998865  6899999999999877  555 46554 668999999999999999988876432     


Q ss_pred             HHhhhccCccceEEEEEEecCCCCC-CCC-CceeecCCCCccc-eeeeccccccccCCCCCeEEEEEeec-----CCCCC
Q 017658          160 FLKVLNLASIDVVSVKLWFDKKVTV-PNV-SNACSGFGDSLAW-TFFDLNKIYDEHKDDSATVIQADFYH-----ANELM  231 (368)
Q Consensus       160 ~~~i~~l~~~~~~~v~l~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~d~s~~~~~~~~~~~~v~~~~~~~-----~~~~~  231 (368)
                      ...+.++.+.++.++++.|+++.+. +.. ...+......... .....++..+... +++.++...++.     .+.+.
T Consensus       291 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~  369 (463)
T PRK12416        291 NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTS-GKQKLLVRMFYKSTNPVYETIK  369 (463)
T ss_pred             hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcC-CCCeEEEEEEeCCCCCCchhhh
Confidence            2345677788899999999876431 111 1112111111100 0011121112112 234444333331     22356


Q ss_pred             CCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCC----CCCCCCCCceEEeccccccCCCCccc
Q 017658          232 PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQ  307 (368)
Q Consensus       232 ~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~----p~~~~~~~~L~laGd~~~~~~~~~~~  307 (368)
                      +++++++.+.++++|.++|+ ... +++...+.+|++++|.|.+|+....    +....+.+|||+||+++..    .+|
T Consensus       370 ~~~dee~~~~~~~~L~~~lG-~~~-~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g----~~i  443 (463)
T PRK12416        370 NYSEEELVRVALYDIEKSLG-IKG-EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG----VGI  443 (463)
T ss_pred             cCCHHHHHHHHHHHHHHHhC-CCC-CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc----ccH
Confidence            67999999999999999996 333 5677888899999998887753211    1112345899999999863    479


Q ss_pred             hHHhHHHHHHHHHHHHHh
Q 017658          308 ERSYVTGLEAANRVVDYL  325 (368)
Q Consensus       308 egA~~Sg~~aA~~Il~~~  325 (368)
                      ++|+.||+.+|++|++.+
T Consensus       444 ~~ai~sg~~aA~~i~~~~  461 (463)
T PRK12416        444 GACIGNGKNTANEIIATL  461 (463)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998764

>PLN02576 protoporphyrinogen oxidase

Probab=99.92  E-value=2.4e-23  Score=205.72  Aligned_cols=296  Identities=14%  Similarity=0.198  Sum_probs=201.5

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH-----------H---hhc-----------
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----------I---LAH-----------   71 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~-----------~---~~~-----------   71 (368)
                      .+++|+.+|+++ ++++++++.+++|++.+.|+.+++++|+..++..+...           +   ...           
T Consensus       143 ~~~~sv~~~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~  221 (496)
T PLN02576        143 GREESVGEFVRR-HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDP  221 (496)
T ss_pred             CCCCcHHHHHHH-hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccccc
Confidence            478999999998 68999999999999999999999999998766553321           0   000           


Q ss_pred             ----CCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C-eEEecCEEEEeeChh
Q 017658           72 ----QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGIS  143 (368)
Q Consensus        72 ----~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g-~~~~ad~VV~a~p~~  143 (368)
                          .........+||| +.|+++|++.+..  ++|++|++|++|..+++ +++ .|++.   | ++++||+||+|+|++
T Consensus       222 ~~~~~~~~~~~~~~gG~-~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~-~~~-~v~~~~~~g~~~~~ad~VI~a~P~~  296 (496)
T PLN02576        222 RLPKPKGQTVGSFRGGL-QTLPDALAKRLGK--DKVKLNWKVLSLSKNDD-GGY-SLTYDTPEGKVNVTAKAVVMTAPLY  296 (496)
T ss_pred             ccccccCCeeEeccchH-HHHHHHHHHhhCc--CcEEcCCEEEEEEECCC-CcE-EEEEecCCCceeEEeCEEEECCCHH
Confidence                0112234558896 5799999876631  68999999999998763 323 34432   4 369999999999999


Q ss_pred             hHHHhhhhccccCchhHHhhhccCccceEEEEEEecCCCCCCC-----CCc---eeecCCCC---ccceeeecccccccc
Q 017658          144 TLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VSN---ACSGFGDS---LAWTFFDLNKIYDEH  212 (368)
Q Consensus       144 ~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~-----~~~---~~~~~~~~---~~~~~~d~s~~~~~~  212 (368)
                      ++.+++.+..   +...+.+..+.+.++.++.+.++++.+...     +..   .+......   ..+ +++ +...+..
T Consensus       297 ~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~-~~~-s~~~p~~  371 (496)
T PLN02576        297 VVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT-IYS-SSLFPDR  371 (496)
T ss_pred             HHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEE-Eee-cCcCCCC
Confidence            9999987531   345677888899999999999988755321     111   11100001   111 222 2222322


Q ss_pred             CCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC---CC
Q 017658          213 KDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---TS  287 (368)
Q Consensus       213 ~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~---~~  287 (368)
                      .+++..++..+..  ..+.+.+++++++++.++++|.++++.....++....+.+|++++|.|.+|+....+...   ..
T Consensus       372 ~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~  451 (496)
T PLN02576        372 APEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKD  451 (496)
T ss_pred             CCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHh
Confidence            2223333332222  224566789999999999999999974321133444567899999999998754322111   12


Q ss_pred             C--CceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          288 F--PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       288 ~--~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                      .  +|||+||||+..    .++++|+.||..+|++|++.+..
T Consensus       452 ~~~~~l~~aG~~~~g----~~i~~ai~sg~~aA~~i~~~~~~  489 (496)
T PLN02576        452 LGLPGLFLGGNYRGG----VALGKCVESGYEAADLVISYLES  489 (496)
T ss_pred             cCCCCEEEeccccCC----ccHHHHHHHHHHHHHHHHHHHhh
Confidence            2  799999999962    47899999999999999988653

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.92  E-value=5.2e-23  Score=200.98  Aligned_cols=289  Identities=17%  Similarity=0.190  Sum_probs=198.6

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hhc------CCCccee
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH------QKNFDLV   78 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~------~~~~~~~   78 (368)
                      ...+++|+.+|+++ ++++.+++.++.|++...|+.+++++|+..+...+..+.          ...      .......
T Consensus       136 ~~~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (451)
T PRK11883        136 KPGQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFG  214 (451)
T ss_pred             CCCCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceE
Confidence            34678999999997 689999999999999999999999999876554332211          000      0122334


Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhhHHHhhhhccccCc
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNR  157 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~  157 (368)
                      +++||+ ..|++.|++.+...  +|+++++|++|..++  +++. |.+ +|++++||+||+|+|+.++.+++.++     
T Consensus       215 ~~~~G~-~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~-----  283 (451)
T PRK11883        215 TLKGGL-QSLIEALEEKLPAG--TIHKGTPVTKIDKSG--DGYE-IVLSNGGEIEADAVIVAVPHPVLPSLFVAP-----  283 (451)
T ss_pred             eeccHH-HHHHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeEE-EEECCCCEEEcCEEEECCCHHHHHHhccCh-----
Confidence            678996 57999999877643  899999999999876  4453 555 47789999999999999999886542     


Q ss_pred             hhHHhhhccCccceEEEEEEecCCCC-CCCCCceeecCCCC--ccceeeeccccccccCCCCCeEEEEEee-cCC-CCCC
Q 017658          158 EEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFY-HAN-ELMP  232 (368)
Q Consensus       158 ~~~~~i~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~--~~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~~-~~~~  232 (368)
                      +..+.+..+.+.++.++++.+++++. .......++..+..  .....++ ++..+...+++..++...+. ... ...+
T Consensus       284 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~  362 (451)
T PRK11883        284 PAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVD  362 (451)
T ss_pred             hHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhcc
Confidence            23456778888889999999988742 12122233221111  1121232 22222222223444433221 112 2345


Q ss_pred             CCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCC----CCCCCCCCCceEEeccccccCCCCccch
Q 017658          233 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGSWSQE  308 (368)
Q Consensus       233 ~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~----~p~~~~~~~~L~laGd~~~~~~~~~~~e  308 (368)
                      .+++++++.+++.|+++++. .. ++.+..+.+|.++++.+.++....    ++.... .+|||+||+|+.   + .+++
T Consensus       363 ~~~~~~~~~~~~~L~~~~g~-~~-~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g-~~i~  435 (451)
T PRK11883        363 ATDEELVAFVLADLSKVMGI-TG-DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---G-VGLP  435 (451)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CC-CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---C-ccHH
Confidence            78999999999999999863 22 455677888999999888876432    122222 679999999985   2 4799


Q ss_pred             HHhHHHHHHHHHHHH
Q 017658          309 RSYVTGLEAANRVVD  323 (368)
Q Consensus       309 gA~~Sg~~aA~~Il~  323 (368)
                      +|+.||+.+|++|+.
T Consensus       436 ~av~sg~~~a~~i~~  450 (451)
T PRK11883        436 DCIAQAKRAAARLLA  450 (451)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999975

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.91  E-value=1.3e-22  Score=200.20  Aligned_cols=295  Identities=15%  Similarity=0.169  Sum_probs=187.4

Q ss_pred             hccCccHHHHHHHcC-CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017658           16 KYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD   94 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~   94 (368)
                      .+..+|+.||+++++ +.++.++.+++..+....+.++++.++...+..+...  ...  ....+++||+ +.|+++|++
T Consensus       166 ~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~G~~~~~GG~-~~l~~aL~~  240 (492)
T TIGR02733       166 PLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA--QAP--HGLWHLHGSM-QTLSDRLVE  240 (492)
T ss_pred             hhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc--ccC--CCceeecCcH-HHHHHHHHH
Confidence            356799999999864 3444566777754433445567788876654333221  111  2235689996 579999999


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C-----eEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCc
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS  168 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g-----~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~  168 (368)
                      .++++|++|+++++|++|..++  +++.+|++. +     +++.||+||+|+|+..+.+|+++..++ ..+.+.++++.+
T Consensus       241 ~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~  317 (492)
T TIGR02733       241 ALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPE  317 (492)
T ss_pred             HHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCC
Confidence            9999999999999999999887  556666553 3     578999999999999999988764432 345566777776


Q ss_pred             cc-eEEEEEEecCCCC-CCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEee-cCCCCCC-------CCHHHH
Q 017658          169 ID-VVSVKLWFDKKVT-VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-HANELMP-------LKDDQV  238 (368)
Q Consensus       169 ~~-~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~~~~~~-------~~~~e~  238 (368)
                      .+ .+++++.+++... ...+.+....++.. ...++..+...+...+++++++.+... ....|..       ..++++
T Consensus       318 s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~  396 (492)
T TIGR02733       318 PSGAFVFYLGVKRAALPVDCPPHLQFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY  396 (492)
T ss_pred             CCceEEEEEeecccccCCCCCcceeeccCCC-ceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence            54 5578888887421 11111111122211 111222222223334345665533222 1112221       235668


Q ss_pred             HHHHHHHHhhhccCCCCCceeeeEEeecCCCccccC-------------CCCc-CCCCCCCCCCCceEEeccccccCCCC
Q 017658          239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF-------------PGSY-KYMMRGFTSFPNLFMAGDWITTRHGS  304 (368)
Q Consensus       239 ~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~-------------pg~~-~~~p~~~~~~~~L~laGd~~~~~~~~  304 (368)
                      .+.+++.+++.+|++++ .++...+. +|.++..++             +... ..++..+++++||||||+++++|   
T Consensus       397 ~~~il~~le~~~p~l~~-~i~~~~v~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG---  471 (492)
T TIGR02733       397 TQTIIERLGHYFDLLEE-NWVHVELA-TPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG---  471 (492)
T ss_pred             HHHHHHHHHHHCCCccc-cEEEEEcc-CCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC---
Confidence            88999999999999986 56655443 444433221             1110 12334468999999999999765   


Q ss_pred             ccchHHhHHHHHHHHHHHHH
Q 017658          305 WSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       305 ~~~egA~~Sg~~aA~~Il~~  324 (368)
                      +++.|++.||+.||+.|++.
T Consensus       472 ~Gv~g~~~sg~~~a~~i~~~  491 (492)
T TIGR02733       472 EGTAGVSYSALMVVRQILAS  491 (492)
T ss_pred             CcHHHHHHHHHHHHHHHhhc
Confidence            35788999999999999864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.90  E-value=2e-22  Score=191.16  Aligned_cols=293  Identities=17%  Similarity=0.204  Sum_probs=206.8

Q ss_pred             hhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH-------h---hc--CC----Ccc
Q 017658           13 AWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-------L---AH--QK----NFD   76 (368)
Q Consensus        13 ~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-------~---~~--~~----~~~   76 (368)
                      .+..-++.|+++|+++ ++++++++++++|++.++|+.+++++|+......+...-       .   ..  +.    ...
T Consensus       128 ~~~~~~d~sv~~f~r~-~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~  206 (444)
T COG1232         128 SWEPKQDISVGEFIRR-RFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEK  206 (444)
T ss_pred             CCCCCCCcCHHHHHHH-HHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccc
Confidence            4567799999999998 799999999999999999999999999984433322210       0   10  00    124


Q ss_pred             eeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccC
Q 017658           77 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCN  156 (368)
Q Consensus        77 ~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~  156 (368)
                      +.+++||+ ++|+++|++.++.+   |+++++|++|..+.. + .+.+..+|++++||.||+|+|++.+.+++++..   
T Consensus       207 ~~~~~gG~-~~l~~al~~~l~~~---i~~~~~V~~i~~~~~-~-~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~---  277 (444)
T COG1232         207 FGYLRGGL-QSLIEALAEKLEAK---IRTGTEVTKIDKKGA-G-KTIVDVGGEKITADGVISTAPLPELARLLGDEA---  277 (444)
T ss_pred             ccccCccH-HHHHHHHHHHhhhc---eeecceeeEEEEcCC-c-cEEEEcCCceEEcceEEEcCCHHHHHHHcCCcc---
Confidence            56779997 57999999999865   999999999999863 3 455566688999999999999999999998731   


Q ss_pred             chhHHhhhccCccceEEEEEEecCCCCCCCCCce-eecCCCCc-cceeeeccccccccCCCCCeEEEEEee-cCC-CCCC
Q 017658          157 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA-CSGFGDSL-AWTFFDLNKIYDEHKDDSATVIQADFY-HAN-ELMP  232 (368)
Q Consensus       157 ~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~~-~~~~  232 (368)
                        ......++.+.+.+++.+.++++.....+.+. ++..+... ...+.-+++..|...+.+.+++.+.++ ..+ ....
T Consensus       278 --~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~  355 (444)
T COG1232         278 --VSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVST  355 (444)
T ss_pred             --hhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhc
Confidence              22455777887888888888876221112221 11122111 111222344433333235666665554 222 2356


Q ss_pred             CCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCC----CCCCCCCceEEeccccccCCCCccch
Q 017658          233 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDWITTRHGSWSQE  308 (368)
Q Consensus       233 ~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p----~~~~~~~~L~laGd~~~~~~~~~~~e  308 (368)
                      ++++|+++.+++.|.++++-..+  .+...+.+|++++|.|.+|+...+.    ...+-.+|++.+|.|... +   ++.
T Consensus       356 ~~dee~~~~~l~~L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g-~---g~~  429 (444)
T COG1232         356 MSDEELVAAVLDDLKKLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG-V---GLP  429 (444)
T ss_pred             cCHHHHHHHHHHHHHHHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC-C---Cch
Confidence            78999999999999999976654  3367788999999999999765322    222234899999988852 2   678


Q ss_pred             HHhHHHHHHHHHHHH
Q 017658          309 RSYVTGLEAANRVVD  323 (368)
Q Consensus       309 gA~~Sg~~aA~~Il~  323 (368)
                      +++.+|..||++|++
T Consensus       430 d~I~~g~~aa~~l~~  444 (444)
T COG1232         430 DCIAAGKEAAEQLLS  444 (444)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999999863

>PLN02268 probable polyamine oxidase

Probab=99.89  E-value=1.3e-21  Score=190.27  Aligned_cols=281  Identities=17%  Similarity=0.110  Sum_probs=183.1

Q ss_pred             hccCccHHHHHHHcC----------CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcc
Q 017658           16 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR   85 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~   85 (368)
                      ..+++|+.+|+++..          +.+++++.++.+ +.+.++.+++++|+..+..   ...+  .+.  ..+..+|+ 
T Consensus       130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~---~~~~--~g~--~~~~~~G~-  200 (435)
T PLN02268        130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ---EELL--EGG--HGLMVRGY-  200 (435)
T ss_pred             cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC---cccc--CCC--ceeecCCH-
Confidence            468899999876531          344445555566 4556788999998864211   0000  111  12456785 


Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh-hh-hccccCchhHHh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL-IK-NSILCNREEFLK  162 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l-l~-~~~l~~~~~~~~  162 (368)
                      +.|+++|++     +.+|+++++|++|..++  ++++ |++. |+++.||+||+|+|+..+++. +. .+.++ ....+.
T Consensus       201 ~~l~~~l~~-----~~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~a  271 (435)
T PLN02268        201 DPVINTLAK-----GLDIRLNHRVTKIVRRY--NGVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEA  271 (435)
T ss_pred             HHHHHHHhc-----cCceeCCCeeEEEEEcC--CcEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHH
Confidence            578888864     56899999999999877  4454 5554 668999999999999999753 32 23342 344677


Q ss_pred             hhccCccceEEEEEEecCCCCCCCCCceeecCCC--CccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHH
Q 017658          163 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQV  238 (368)
Q Consensus       163 i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~  238 (368)
                      ++++.+.+..++.+.|++++|....   +++...  ......++..  ..   .++..++.....  .+..+.+++++++
T Consensus       272 i~~~~~g~~~Kv~l~f~~~fw~~~~---~~g~~~~~~~~~~~~~~~--~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~  343 (435)
T PLN02268        272 ISDLGVGIENKIALHFDSVFWPNVE---FLGVVAPTSYGCSYFLNL--HK---ATGHPVLVYMPAGRLARDIEKLSDEAA  343 (435)
T ss_pred             HHhCCccceeEEEEEeCCCCCCCCc---eeeccCCCCCCceEEEec--cc---CCCCCEEEEEeccHHHHHHHhCCHHHH
Confidence            8888888899999999999884322   222211  1111112211  11   123344433222  2234667899999


Q ss_pred             HHHHHHHHhhhccCCCCCceeeeEEeecCCCcc------ccCCCCc-CCCCCCCCCCCceEEeccccccCCCCccchHHh
Q 017658          239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSY  311 (368)
Q Consensus       239 ~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~------~~~pg~~-~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~  311 (368)
                      ++.++++|.++||...  +++...+.+|....+      .+.||.. ...+....|+++|||||++++..++ ++||||+
T Consensus       344 ~~~v~~~L~~~~~~~~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~-g~~eGA~  420 (435)
T PLN02268        344 ANFAMSQLKKMLPDAT--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP-GSVHGAY  420 (435)
T ss_pred             HHHHHHHHHHHcCCCC--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc-ccHHHHH
Confidence            9999999999998643  456666777854321      2234432 1222334678899999999987777 7999999


Q ss_pred             HHHHHHHHHHHHHh
Q 017658          312 VTGLEAANRVVDYL  325 (368)
Q Consensus       312 ~Sg~~aA~~Il~~~  325 (368)
                      .||++||++|++.+
T Consensus       421 ~sG~raA~~v~~~l  434 (435)
T PLN02268        421 STGVMAAEECRMRL  434 (435)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999764

>PLN02529 lysine-specific histone demethylase 1

Probab=99.89  E-value=1.1e-20  Score=190.32  Aligned_cols=290  Identities=14%  Similarity=0.115  Sum_probs=179.6

Q ss_pred             hccCccHHHHHHHcC------CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhh
Q 017658           16 KYDSITARELFKQFG------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF   89 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~   89 (368)
                      .++++|+.+|+++..      .++.. +.+++..+....+..+..++...+........  ...+.......||+ .+|+
T Consensus       285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~--~e~~G~~~~i~GG~-~~Li  360 (738)
T PLN02529        285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDDP--YEMGGDHCFLAGGN-WRLI  360 (738)
T ss_pred             CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhccc--cccCCceEEECCcH-HHHH
Confidence            467899999998653      33432 34555444333333344443322222211110  00111223457896 5799


Q ss_pred             HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHH--hhhhccccCchhHHhhhccC
Q 017658           90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLA  167 (368)
Q Consensus        90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~--ll~~~~l~~~~~~~~i~~l~  167 (368)
                      ++|++     +..|++|++|++|..++  +.|+ |.+++++++||+||+|+|+.++++  +...+.++ ....++|.++.
T Consensus       361 ~aLA~-----~L~IrLnt~V~~I~~~~--dGVt-V~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~  431 (738)
T PLN02529        361 NALCE-----GVPIFYGKTVDTIKYGN--DGVE-VIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLG  431 (738)
T ss_pred             HHHHh-----cCCEEcCCceeEEEEcC--CeEE-EEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCC
Confidence            99875     34699999999999987  4454 666677899999999999999984  33333443 45578899999


Q ss_pred             ccceEEEEEEecCCCCCCCCCceeecCC----CC-cccee-eeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHH
Q 017658          168 SIDVVSVKLWFDKKVTVPNVSNACSGFG----DS-LAWTF-FDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVV  239 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~----~~-~~~~~-~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~  239 (368)
                      +.++.++.+.|++++|.....  +++..    .. ..+.. ++..   .  . +++.++.....  .+..+..+++++++
T Consensus       432 yG~v~KV~L~F~~~FW~~~~~--~fG~l~~~~~~~g~~~~~~~~~---~--~-~ggpvLvafv~G~~A~~le~lsdeeii  503 (738)
T PLN02529        432 FGLLNKVAMVFPSVFWGEELD--TFGCLNESSNKRGEFFLFYGYH---T--V-SGGPALVALVAGEAAQRFENTDPSTLL  503 (738)
T ss_pred             CceeEEEEEEeCCccccCCCC--ceEEEeccCCCCceEEEEecCC---C--C-CCCCEEEEEECchhhHHHhcCCHHHHH
Confidence            999999999999998844211  11211    01 11111 1111   0  1 12334333222  23346678899999


Q ss_pred             HHHHHHHhhhccC--CCCCceeeeEEeecCCCcc------ccCCCCcC-CCCCCCCC-CCceEEeccccccCCCCccchH
Q 017658          240 AKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTS-FPNLFMAGDWITTRHGSWSQER  309 (368)
Q Consensus       240 ~~~~~~l~~~~p~--~~~~~i~~~~~~~~~~~~~------~~~pg~~~-~~p~~~~~-~~~L~laGd~~~~~~~~~~~eg  309 (368)
                      +.+++.|.++|+.  .....++...+.+|..+.+      ...|+... .......+ .++|||||++++..|+ ++|||
T Consensus       504 ~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~p-gtVeG  582 (738)
T PLN02529        504 HRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYP-ATMHG  582 (738)
T ss_pred             HHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCC-eEeHH
Confidence            9999999999963  2212455666677754422      11222211 01111233 4789999999998888 79999


Q ss_pred             HhHHHHHHHHHHHHHhCC
Q 017658          310 SYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       310 A~~Sg~~aA~~Il~~~~~  327 (368)
                      |+.||++||++|++.++.
T Consensus       583 Ai~SG~RAA~eIl~~l~~  600 (738)
T PLN02529        583 AFLSGLREASRILHVARS  600 (738)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998864

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.89  E-value=5.8e-21  Score=188.94  Aligned_cols=295  Identities=11%  Similarity=-0.000  Sum_probs=186.2

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHH
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS   95 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~   95 (368)
                      .++..|+.+|++++..++ .++.++.. ....++.+|++.++...+..+..+      .....+++||+ ..++++|.+.
T Consensus       158 ~~~~~s~~~~~~~~~~~~-~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~------~~g~~~~~gG~-~~l~~al~~~  228 (502)
T TIGR02734       158 LLAWRSLYSKVARFFSDE-RLRQAFSF-HALFLGGNPFRTPSIYALISALER------EWGVWFPRGGT-GALVAAMAKL  228 (502)
T ss_pred             ccCcCCHHHHHHhhcCCH-HHHHHhcc-cceeeccCcccchHHHHHHHHHHh------hceEEEcCCCH-HHHHHHHHHH
Confidence            456899999999864445 45566652 334567788888875433222111      12335788996 6899999999


Q ss_pred             HHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhccccCchhHHhhhccCc-cceE
Q 017658           96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS-IDVV  172 (368)
Q Consensus        96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~-~ll~~~~l~~~~~~~~i~~l~~-~~~~  172 (368)
                      ++++|++|+++++|++|..++  +++++|++. |++++||.||+|+++..+. .|++....+ ....+.++.+++ ...+
T Consensus       229 ~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~  305 (502)
T TIGR02734       229 AEDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLF  305 (502)
T ss_pred             HHHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeee
Confidence            999999999999999999876  677788876 6689999999999997776 455543221 122344455554 3567


Q ss_pred             EEEEEec---CCCCCCC-CCceeecCCC--------------Cccceeeec-cccccccCCCCCeEEEEEee-cC-----
Q 017658          173 SVKLWFD---KKVTVPN-VSNACSGFGD--------------SLAWTFFDL-NKIYDEHKDDSATVIQADFY-HA-----  227 (368)
Q Consensus       173 ~v~l~~~---~~~~~~~-~~~~~~~~~~--------------~~~~~~~d~-s~~~~~~~~~~~~v~~~~~~-~~-----  227 (368)
                      ++++.++   +++. .. .++.++..+.              .....++.. +...+...+++.+++.+... +.     
T Consensus       306 ~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~  384 (502)
T TIGR02734       306 VLYFGLLGVDGHWP-QLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTAD  384 (502)
T ss_pred             EEEEeeccccCcCC-CcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCC
Confidence            7888887   3332 12 2233321110              001111211 22223344355555433222 21     


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhh-ccCCCCCceeeeEEeecCCCcccc-----------CC--C-CcCCCCC-CCCCCCce
Q 017658          228 NELMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIRRFPKSLTHF-----------FP--G-SYKYMMR-GFTSFPNL  291 (368)
Q Consensus       228 ~~~~~~~~~e~~~~~~~~l~~~-~p~~~~~~i~~~~~~~~~~~~~~~-----------~p--g-~~~~~p~-~~~~~~~L  291 (368)
                      ..|.+ .++++.+.+++.+++. +|++++ .|+...+. +|.++..+           .+  . ....||. ..++++||
T Consensus       385 ~~~~~-~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gL  461 (502)
T TIGR02734       385 VDWSV-EGPRYRDRILAYLEERAIPGLRD-RIVVERTF-TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNL  461 (502)
T ss_pred             CCcHH-HHHHHHHHHHHHHHHhcCCChhH-heEEEEEc-CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCE
Confidence            12433 3677889999999998 999986 56655443 33322221           11  1 1123553 35789999


Q ss_pred             EEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCC
Q 017658          292 FMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS  329 (368)
Q Consensus       292 ~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~  329 (368)
                      |+||+++++|   +++.+|+.||+.||+.|+++.+.++
T Consensus       462 yl~G~~~~pG---~Gv~g~~~sg~~~a~~il~~~~~~~  496 (502)
T TIGR02734       462 YLVGAGTHPG---AGVPGVLGSAKATAKLMLGDLAPGP  496 (502)
T ss_pred             EEeCCCCCCC---CCHHHHHHHHHHHHHHHHhhccCCC
Confidence            9999999764   3678899999999999999987543

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN03000 amine oxidase

Probab=99.87  E-value=1.7e-20  Score=189.62  Aligned_cols=260  Identities=15%  Similarity=0.155  Sum_probs=171.5

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHH--HhhhhccccC
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCN  156 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~--~ll~~~~l~~  156 (368)
                      ...||+ ..|+++|++.+     .|+++++|++|..++  +.|. |++++++++||+||+|+|+.+++  .+...+.++ 
T Consensus       375 ~v~GG~-~~LieaLa~~L-----~I~Ln~~Vt~I~~~~--dgV~-V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP-  444 (881)
T PLN03000        375 FLPGGN-GRLVQALAENV-----PILYEKTVQTIRYGS--NGVK-VIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELP-  444 (881)
T ss_pred             EeCCCH-HHHHHHHHhhC-----CcccCCcEEEEEECC--CeEE-EEECCcEEEeceEEEcCCHHHHhhCceeeCCCCC-
Confidence            457996 57999998766     399999999999887  4454 66666789999999999999998  344444443 


Q ss_pred             chhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCC---C---CccceeeeccccccccCCCCCeEEEEEee--cCC
Q 017658          157 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---D---SLAWTFFDLNKIYDEHKDDSATVIQADFY--HAN  228 (368)
Q Consensus       157 ~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~  228 (368)
                      ....++|+++.+....++.+.|++++|.... . ++++.   .   ...+.+++.+   +   ..++.++.....  .+.
T Consensus       445 ~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~-~-~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd~A~  516 (881)
T PLN03000        445 QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL-D-TFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGEAAH  516 (881)
T ss_pred             HHHHHHHHcCCCcceEEEEEEeCCccccCCC-C-ceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCchhH
Confidence            4556889999999999999999999885421 1 22211   0   1111122211   1   023344433222  234


Q ss_pred             CCCCCCHHHHHHHHHHHHhhhccC--CCCCceeeeEEeecCCCcc------ccCCCCcC-CCCCCCCCC--CceEEeccc
Q 017658          229 ELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTSF--PNLFMAGDW  297 (368)
Q Consensus       229 ~~~~~~~~e~~~~~~~~l~~~~p~--~~~~~i~~~~~~~~~~~~~------~~~pg~~~-~~p~~~~~~--~~L~laGd~  297 (368)
                      .+..++++++++.+++.|+++|+.  ..-.+++...+.+|..+.+      .+.||... .......|+  ++|||||++
T Consensus       517 ~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEa  596 (881)
T PLN03000        517 KFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEA  596 (881)
T ss_pred             HhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehH
Confidence            567789999999999999999963  2212456677778855422      22233221 111122353  589999999


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHhCC-CCccccccCCCCchhHHHHHHHHHHhhhhhc
Q 017658          298 ITTRHGSWSQERSYVTGLEAANRVVDYLGD-GSFSKIIPVEEDEPHIEALRTVNRRFNEIRA  358 (368)
Q Consensus       298 ~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (368)
                      ++..|+ ++|+||+.||++||++|+..+.. ..+.++.-....+++.. .-.|++-||+|--
T Consensus       597 Ts~~~~-GTVhGAieSGlRAA~eIl~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  656 (881)
T PLN03000        597 TTRRYP-ATMHGAFVTGLREAANMAQSAKARGIRKRIDRNPSKNAHSC-AILLADLFRDPDL  656 (881)
T ss_pred             HhCCCC-eeHHHHHHHHHHHHHHHHHHhhhccCCcccccCccccccch-hHHHHHHhhCcCc
Confidence            987788 79999999999999999999975 44433332222233322 2338888998743

>PLN02676 polyamine oxidase

Probab=99.87  E-value=5.5e-21  Score=187.11  Aligned_cols=263  Identities=12%  Similarity=0.134  Sum_probs=170.0

Q ss_pred             hcCCchhhhHHHHHHHHHHHHhhcCCCcceeee-cCCcchhhhHHHHHHHHHc------CCEEeccceeeeEEecCCCce
Q 017658           48 LFAPAEQCSAAATLGILYFIILAHQKNFDLVWC-RGTLREKIFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCC  120 (368)
Q Consensus        48 ~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~-~GG~~~~L~~~l~~~l~~~------G~~i~~~t~V~~I~~~~~~g~  120 (368)
                      ++.+++++|+..++.. ..+  ...++....+. +||+ ++|++.|++.+.++      +.+|++|++|++|..++  +.
T Consensus       189 ~~~~~~~~S~~~~~~~-~~~--~~~g~~~~~~~~~~G~-~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~--~g  262 (487)
T PLN02676        189 FAEPPRVTSLKNTEPN-PTF--VDFGEDEYFVADPRGY-ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK--NG  262 (487)
T ss_pred             eccCccccchhhcCcc-ccc--ccCCCceEEeecCCCH-HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC--Cc
Confidence            5667788887654321 111  11112222222 5785 67999999877543      25799999999999876  44


Q ss_pred             EEEEEEC-CeEEecCEEEEeeChhhHHH--hhhhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCCC
Q 017658          121 ISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS  197 (368)
Q Consensus       121 v~~v~~~-g~~~~ad~VV~a~p~~~l~~--ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~  197 (368)
                      |+ |.+. |++++||+||+|+|+..+++  +...+.++ ....+.++.+.+....++.+.|++++|...+...++.....
T Consensus       263 V~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~  340 (487)
T PLN02676        263 VT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHE  340 (487)
T ss_pred             EE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeecc
Confidence            64 6665 66899999999999999985  44444553 44567888889888999999999999854221111111100


Q ss_pred             -----ccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCC-
Q 017658          198 -----LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS-  269 (368)
Q Consensus       198 -----~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~-  269 (368)
                           ..|..++     ...  ++..++...+..  +..+..+++++..+.+++.|.++||.... +++......|..+ 
T Consensus       341 ~~~~~~~~~~~~-----~~~--~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~-~p~~~~~~~W~~dp  412 (487)
T PLN02676        341 RRGYYPFWQHLE-----NEY--PGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIP-EATDILVPRWWSNR  412 (487)
T ss_pred             ccccchhhhhcc-----cCC--CCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCC-CcceEEecccCCCC
Confidence                 0111111     001  233344332221  23456688999999999999999974222 4555556667433 


Q ss_pred             -----ccccCCCCcC-CCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          270 -----LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       270 -----~~~~~pg~~~-~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                           +..+.||... ..+....|+++|||||++++..++ ++||||+.||++||++|++.++.
T Consensus       413 ~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~-g~~eGA~~SG~RaA~~I~~~l~~  475 (487)
T PLN02676        413 FFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYN-GYVHGAYLAGIDTANDLLECIKK  475 (487)
T ss_pred             CCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccc-cchHHHHHHHHHHHHHHHHHhcc
Confidence                 2223344322 122234678999999999987777 79999999999999999999875

>TIGR02730 carot_isom carotene isomerase

Probab=99.87  E-value=6.7e-20  Score=180.75  Aligned_cols=295  Identities=16%  Similarity=0.160  Sum_probs=183.6

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHHH
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM   96 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~l   96 (368)
                      +-..|+.++++++..++.+ +.++...+......++.+.++......+...     ......+++||+ ..|+++|++.+
T Consensus       167 ~~~~s~~~~~~~~~~~~~l-~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~-~~l~~~L~~~~  239 (493)
T TIGR02730       167 YLPQNAGDIARRYIRDPGL-LKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGV-GQIAESLVKGL  239 (493)
T ss_pred             HhhccHHHHHHHhcCCHHH-HHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChH-HHHHHHHHHHH
Confidence            3458999999987666664 4566543322222334677665544333211     112346789996 57999999999


Q ss_pred             HHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhccccCchhHHhhhccCcc-ceEE
Q 017658           97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLASI-DVVS  173 (368)
Q Consensus        97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~-~ll~~~~l~~~~~~~~i~~l~~~-~~~~  173 (368)
                      +++|++|+++++|++|..++  +++.+|+++ |++++||.||+|++++.+. +|++...++ ......++.++.. ..++
T Consensus       240 ~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~  316 (493)
T TIGR02730       240 EKHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLS  316 (493)
T ss_pred             HHCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEE
Confidence            99999999999999999876  678889886 6689999999999887665 677654332 2233344455543 5778


Q ss_pred             EEEEecCCCCCCC--CCceeec-CC---CCccceeeec-cccccccCCCCCeEEEEEee-cCCCCCC-------CCHHHH
Q 017658          174 VKLWFDKKVTVPN--VSNACSG-FG---DSLAWTFFDL-NKIYDEHKDDSATVIQADFY-HANELMP-------LKDDQV  238 (368)
Q Consensus       174 v~l~~~~~~~~~~--~~~~~~~-~~---~~~~~~~~d~-s~~~~~~~~~~~~v~~~~~~-~~~~~~~-------~~~~e~  238 (368)
                      +++.++++..+..  .++.++. +.   ......+... +...+...+++.+++.+... ....|.+       ..++++
T Consensus       317 ~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~  396 (493)
T TIGR02730       317 LHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEAD  396 (493)
T ss_pred             EEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHH
Confidence            8999987542111  1222211 10   0111111221 22223344345565433221 1122321       135668


Q ss_pred             HHHHHHHHhhhccCCCCCceeeeEEeecCCCccccC--C-CCc---C-------CC-CCCCCCCCceEEeccccccCCCC
Q 017658          239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--P-GSY---K-------YM-MRGFTSFPNLFMAGDWITTRHGS  304 (368)
Q Consensus       239 ~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~--p-g~~---~-------~~-p~~~~~~~~L~laGd~~~~~~~~  304 (368)
                      .+.+++.+++++|++++ .|+...+. +|.++..+.  + |.+   .       .+ |..+|+++|||+||+++++|   
T Consensus       397 ~~~il~~l~~~~p~l~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG---  471 (493)
T TIGR02730       397 AERIIDRLEKIFPGLDS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG---  471 (493)
T ss_pred             HHHHHHHHHHHCCChhh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC---
Confidence            89999999999999986 56554443 444432221  1 111   0       11 34568999999999999764   


Q ss_pred             ccchHHhHHHHHHHHHHHHHhC
Q 017658          305 WSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       305 ~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      +++.+|+.||+.||+.|+++++
T Consensus       472 ~Gv~g~~~sG~~~a~~i~~~~~  493 (493)
T TIGR02730       472 QGLNAVAFSGFACAHRVAADLG  493 (493)
T ss_pred             CCHHHHHHHHHHHHHHHHhhcC
Confidence            4678999999999999998754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.86  E-value=9.3e-20  Score=184.34  Aligned_cols=259  Identities=14%  Similarity=0.126  Sum_probs=167.9

Q ss_pred             eeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHH--hhhhcccc
Q 017658           78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILC  155 (368)
Q Consensus        78 ~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~--ll~~~~l~  155 (368)
                      ....||+ .+|+++|++.+     .|++|++|++|..+++ | |. |..+|++++||+||+|+|+.++++  +...+.++
T Consensus       430 ~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~d-g-V~-V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP  500 (808)
T PLN02328        430 CFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVD-G-VI-VYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELP  500 (808)
T ss_pred             EEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCC-e-EE-EEeCCeEEEcCEEEECCCHHHHhhcccccCCCCC
Confidence            3457996 57999998765     3999999999999773 4 53 556688999999999999999984  32333342


Q ss_pred             CchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecC---CC-Ccc-ce-eeeccccccccCCCCCeEEEEEee--cC
Q 017658          156 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GD-SLA-WT-FFDLNKIYDEHKDDSATVIQADFY--HA  227 (368)
Q Consensus       156 ~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~-~~~-~~-~~d~s~~~~~~~~~~~~v~~~~~~--~~  227 (368)
                       ....++|.++.+.++.++.+.|++++|.... . .++.   +. ..+ +. +++.+.     . .++.++.....  .+
T Consensus       501 -~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~-d-~fG~l~~d~s~rG~~~lf~s~s~-----~-~G~~vLvafv~G~~A  571 (808)
T PLN02328        501 -QRKKDAIQRLGYGLLNKVALLFPYNFWGGEI-D-TFGHLTEDPSMRGEFFLFYSYSS-----V-SGGPLLIALVAGDAA  571 (808)
T ss_pred             -HHHHHHHHcCCCcceEEEEEEeCCccccCCC-C-ceEEEeecCCCCceEEEEecCCC-----C-CCCcEEEEEecChhh
Confidence             4556889999999999999999999885321 1 1111   11 101 11 122111     0 23444433322  22


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhccC--CCCCceeeeEEeecCCCccc------cCCCCcC-CCCCCCCC--CCceEEecc
Q 017658          228 NELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTS--FPNLFMAGD  296 (368)
Q Consensus       228 ~~~~~~~~~e~~~~~~~~l~~~~p~--~~~~~i~~~~~~~~~~~~~~------~~pg~~~-~~p~~~~~--~~~L~laGd  296 (368)
                      ..+..++++++++.+++.|.++|+.  .....++...+.+|..+.+.      +.+|... ..+....+  .++|||||+
T Consensus       572 ~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGE  651 (808)
T PLN02328        572 VKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGE  651 (808)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEh
Confidence            3456678999999999999999963  21124666777788655322      2233321 11112234  358999999


Q ss_pred             ccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccccccCCCCchhHHHHHHHHHHhhhhhc
Q 017658          297 WITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRA  358 (368)
Q Consensus       297 ~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (368)
                      +++..++ ++|+||+.||+++|++|++.++.  +....+..- ...-....+|.+-||+|--
T Consensus       652 aTs~~~~-GtVhGAi~SGlRAA~eIl~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  709 (808)
T PLN02328        652 ATNKQYP-ATMHGAFLSGMREAANILRVARR--RSLCIDDKV-NNDEEEDDCLDQLFDTPDL  709 (808)
T ss_pred             hHhCCCC-eEhHHHHHHHHHHHHHHHHHHhh--cccCCcccc-cccchhhhHHHHHhcCcCc
Confidence            9987777 79999999999999999999874  211111111 1111245668999998743

>PLN02568 polyamine oxidase

Probab=99.86  E-value=3.6e-20  Score=182.72  Aligned_cols=296  Identities=15%  Similarity=0.117  Sum_probs=187.2

Q ss_pred             CccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH-----------h--hcCC-----Ccceeee
Q 017658           19 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----------L--AHQK-----NFDLVWC   80 (368)
Q Consensus        19 ~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-----------~--~~~~-----~~~~~~~   80 (368)
                      +.|+.+|+++ ++++ ..+.+.+|+..+.+...+++.+...++..+..+.           +  ....     .......
T Consensus       160 ~~Sl~~fl~~-~l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i  237 (539)
T PLN02568        160 GGSVGSFLRR-GLDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI  237 (539)
T ss_pred             CCcHHHHHHH-HHHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence            3599999996 4544 5566777877888888888777766555443321           0  0000     0112345


Q ss_pred             cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHH------hhhhcc
Q 017658           81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE------LIKNSI  153 (368)
Q Consensus        81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~------ll~~~~  153 (368)
                      .||+ +.|+++|++.+.  +.+|++|++|++|..++  +.|+ |.+. |+++.||+||+|+|+.++++      +...+.
T Consensus       238 ~gG~-~~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~  311 (539)
T PLN02568        238 AKGY-LSVIEALASVLP--PGTIQLGRKVTRIEWQD--EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP  311 (539)
T ss_pred             CCcH-HHHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence            7895 579999998875  46899999999999887  4454 5554 67899999999999999985      233334


Q ss_pred             ccCchhHHhhhccCccceEEEEEEecCCCCCCC------CCceee-cCCC------CccceeeeccccccccCCCCCeEE
Q 017658          154 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN------VSNACS-GFGD------SLAWTFFDLNKIYDEHKDDSATVI  220 (368)
Q Consensus       154 l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~------~~~~~~-~~~~------~~~~~~~d~s~~~~~~~~~~~~v~  220 (368)
                      ++ ..+.++|+.+.+....++.+.|++++|...      +...+. ....      ...+.+-......+ .. .+..++
T Consensus       312 LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~vL  388 (539)
T PLN02568        312 LP-DFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP-IH-KNSSVL  388 (539)
T ss_pred             CC-HHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc-cC-CCCCEE
Confidence            43 445788899999999999999999987421      100010 0000      00000000000111 01 133444


Q ss_pred             EEEeec--CCCCCCCCHHHHHHHHHHHHhhhccCCCC---------------------CceeeeEEeecCCC------cc
Q 017658          221 QADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFST---------------------ATVMDHKIRRFPKS------LT  271 (368)
Q Consensus       221 ~~~~~~--~~~~~~~~~~e~~~~~~~~l~~~~p~~~~---------------------~~i~~~~~~~~~~~------~~  271 (368)
                      ......  +..+..++++++++.+++.|.++|+....                     .+++...+.+|..+      +.
T Consensus       389 ~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs  468 (539)
T PLN02568        389 LSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS  468 (539)
T ss_pred             EEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence            433332  23456788999999999999999973210                     24566666677433      22


Q ss_pred             ccCCCCcCC-CCCCCCCC-------------CceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          272 HFFPGSYKY-MMRGFTSF-------------PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       272 ~~~pg~~~~-~p~~~~~~-------------~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ...||.... +.....|+             ++|||||++++..|+ ++|+||+.||+++|++|++.++
T Consensus       469 ~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~  536 (539)
T PLN02568        469 YVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYK  536 (539)
T ss_pred             CCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhc
Confidence            223443221 11112233             379999999998888 7999999999999999998865

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.86  E-value=5.4e-21  Score=184.84  Aligned_cols=297  Identities=20%  Similarity=0.152  Sum_probs=174.8

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhh----cCCCcceeeecCCcchhhhH
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFE   90 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~----~~~~~~~~~~~GG~~~~L~~   90 (368)
                      ...+.+++.+|+....+.+.....++.++.....+..+...++......+......    ...........|+    +..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~  213 (450)
T PF01593_consen  138 LEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGG----LSL  213 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTT----THH
T ss_pred             hhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccc----hhH
Confidence            44456677777766555554444345555555555555556655322222211110    0011111222344    334


Q ss_pred             HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccc
Q 017658           91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID  170 (368)
Q Consensus        91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~  170 (368)
                      .+...++..|++|++|++|++|..++  ++|+.+..+|++++||+||+|+|+..+.++.-.+.++ ....+.++.+.+.+
T Consensus       214 ~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~-~~~~~a~~~~~~~~  290 (450)
T PF01593_consen  214 ALALAAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLP-EDKRRAIENLPYSS  290 (450)
T ss_dssp             HHHHHHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSH-HHHHHHHHTEEEEE
T ss_pred             HHHHHHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhhhhhccccc-ccccccccccccCc
Confidence            45555666688999999999999998  6776444557799999999999999999622221221 23456777888888


Q ss_pred             eEEEEEEecCCCCCCCC-CceeecCCC-CccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHHH
Q 017658          171 VVSVKLWFDKKVTVPNV-SNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYL  246 (368)
Q Consensus       171 ~~~v~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~e~~~~~~~~l  246 (368)
                      ..++++.++++++.+.. ...+...+. .....+.+.+...+.   +++.++..+...  ...+.+++++++++.++++|
T Consensus       291 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L  367 (450)
T PF01593_consen  291 VSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDL  367 (450)
T ss_dssp             EEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ceeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHHh
Confidence            88999999999875431 111111111 111112222211111   234444333321  13467789999999999999


Q ss_pred             hhhccCCCCCceeeeEEeecCCC-cccc-----CCCCc-CCCCCCCCCC-CceEEeccccccCCCCccchHHhHHHHHHH
Q 017658          247 SKCIKDFSTATVMDHKIRRFPKS-LTHF-----FPGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGLEAA  318 (368)
Q Consensus       247 ~~~~p~~~~~~i~~~~~~~~~~~-~~~~-----~pg~~-~~~p~~~~~~-~~L~laGd~~~~~~~~~~~egA~~Sg~~aA  318 (368)
                      ++++|.....++....+.+|... ++..     .++.. ..++...+++ +||||||||++++++ ++++||+.||.+||
T Consensus       368 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~~aA  446 (450)
T PF01593_consen  368 RKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGRRAA  446 (450)
T ss_dssp             HHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHHHHH
Confidence            99999522123445555667552 2221     12221 1233445677 699999999998777 79999999999999


Q ss_pred             HHHH
Q 017658          319 NRVV  322 (368)
Q Consensus       319 ~~Il  322 (368)
                      ++|+
T Consensus       447 ~~il  450 (450)
T PF01593_consen  447 EEIL  450 (450)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9986

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02976 amine oxidase

Probab=99.83  E-value=3.2e-19  Score=185.19  Aligned_cols=259  Identities=17%  Similarity=0.144  Sum_probs=166.3

Q ss_pred             cCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecC--------CCce
Q 017658           49 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCC  120 (368)
Q Consensus        49 ~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~--------~~g~  120 (368)
                      +.+++++|+..+.   .......-++. .....||+ .+|+++|++.+     .|++|++|++|...+        +++.
T Consensus       904 aa~L~eVSl~~~~---qd~~y~~fgG~-~~rIkGGY-qqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG  973 (1713)
T PLN02976        904 AALLKEVSLPYWN---QDDVYGGFGGA-HCMIKGGY-SNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK  973 (1713)
T ss_pred             cCCHHHhhhhhhh---cccccccCCCc-eEEeCCCH-HHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc
Confidence            5677888875322   10000111111 22357896 57999998755     499999999999842        1133


Q ss_pred             EEEEEEC-CeEEecCEEEEeeChhhHH--HhhhhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCC-
Q 017658          121 ISDVVCG-KETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-  196 (368)
Q Consensus       121 v~~v~~~-g~~~~ad~VV~a~p~~~l~--~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-  196 (368)
                      |. |.+. |++++||+||+|+|+.+|+  .+...+.|| ....++|..+.+....++.+.|++++|.... . +++... 
T Consensus       974 Vt-VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLP-e~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~-d-~FG~s~e 1049 (1713)
T PLN02976        974 VK-VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLP-DWKYSSIQRLGFGVLNKVVLEFPEVFWDDSV-D-YFGATAE 1049 (1713)
T ss_pred             EE-EEECCCCEEEeceEEEeCCHHHhhhcccccCCccc-HHHHHHHHhhccccceEEEEEeCCccccCCC-C-ccccccc
Confidence            54 5554 6789999999999999997  344444553 3446778999999999999999999885421 1 222211 


Q ss_pred             -----CccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCC
Q 017658          197 -----SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS  269 (368)
Q Consensus       197 -----~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~  269 (368)
                           ...+.+++..      ...+..++...+.  .+..+..++++++++.+++.|.++||......++...+.+|...
T Consensus      1050 dtdlrG~~~~~wnlr------~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976       1050 ETDLRGQCFMFWNVK------KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred             cCCCCceEEEeccCC------CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence                 0111111111      1112344433332  22345668899999999999999998532225667777778544


Q ss_pred             cc------ccCCCCcC-CCCCCCCCCCc-eEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCC
Q 017658          270 LT------HFFPGSYK-YMMRGFTSFPN-LFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG  328 (368)
Q Consensus       270 ~~------~~~pg~~~-~~p~~~~~~~~-L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~  328 (368)
                      .+      ...||... .+.....|+.| |||||++++..|+ ++|+||+.||.+||++|+..+..+
T Consensus      1124 PySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G 1189 (1713)
T PLN02976       1124 PFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTG 1189 (1713)
T ss_pred             CCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHcc
Confidence            22      12234321 11122356666 9999999988888 799999999999999999999764

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.78  E-value=1.8e-17  Score=154.25  Aligned_cols=232  Identities=16%  Similarity=0.140  Sum_probs=158.0

Q ss_pred             cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChhhHHHhhhhccccCchh
Q 017658           81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNREE  159 (368)
Q Consensus        81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~  159 (368)
                      -||| ..|.+++++.+   |..|+++++|++|..++  .+|+ |++.+ +++.+|+||||+|+.++.+|--.+.+ ++++
T Consensus       205 ~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~--~gV~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~~~  276 (450)
T COG1231         205 LGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDG--DGVT-VTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PAEY  276 (450)
T ss_pred             CccH-HHHHHHHHHHh---hceEEecCceeeEEEcC--CeEE-EEeCCcceEEecEEEEecCHHHHhhcccCCCC-CHHH
Confidence            3896 67999988655   56899999999999887  4475 77776 89999999999999999987655433 3566


Q ss_pred             HHhhhccCccceEEEEEEecCCCCCCCC-CceeecCCCCccceeeeccccccccCCCCCeEEEEEee---cCCCCCCCCH
Q 017658          160 FLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKD  235 (368)
Q Consensus       160 ~~~i~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~  235 (368)
                      .++++.+.|.+..++.+.|++++|.+.. .+...-.|.......++ ++.   +. .+..|+...+.   .+..|..+++
T Consensus       277 ~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~-s~~---~~-~G~gVl~g~~~~g~~A~~~~~~~~  351 (450)
T COG1231         277 KQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYP-SAP---FA-DGPGVLLGSYAFGDDALVIDALPE  351 (450)
T ss_pred             HHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecC-ccc---cC-CCceEEEeeeeccccceeEecCCH
Confidence            7788888899999999999999996543 11111012221111122 211   11 23344433222   2345778999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCc------cccCCCCc-CCCCCCCCCCCceEEeccccccCCCCccch
Q 017658          236 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQE  308 (368)
Q Consensus       236 ~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~------~~~~pg~~-~~~p~~~~~~~~L~laGd~~~~~~~~~~~e  308 (368)
                      ++.++.++..+.++||+...........++|....      ..+.||.. ...|....+.++++|||....+.++ +++|
T Consensus       352 ~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw~e  430 (450)
T COG1231         352 AERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GWLE  430 (450)
T ss_pred             HHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccccccc-chhH
Confidence            99999999999999995432123332555564432      22334432 2334445688999999944444677 7999


Q ss_pred             HHhHHHHHHHHHHHHHhC
Q 017658          309 RSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       309 gA~~Sg~~aA~~Il~~~~  326 (368)
                      ||+.||..||.+|...+.
T Consensus       431 GAi~Sg~~AA~ei~~~l~  448 (450)
T COG1231         431 GAIRSGQRAAAEIHALLS  448 (450)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999988765

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.75  E-value=4.3e-16  Score=143.48  Aligned_cols=239  Identities=15%  Similarity=0.129  Sum_probs=152.4

Q ss_pred             ceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH-Hhhhhcc
Q 017658           76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSI  153 (368)
Q Consensus        76 ~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~-~ll~~~~  153 (368)
                      .+.|+.|||+ .+.+++++.++++|++|.+++.|++|..++  |++.||++. |.++.+..||+++.++.+. +|++...
T Consensus       255 ~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~  331 (561)
T KOG4254|consen  255 GWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA  331 (561)
T ss_pred             cccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence            4568999986 699999999999999999999999999988  999999987 7789999999999998887 8999887


Q ss_pred             ccCchhHHhhhccCcc-ceEE----EEEEecCCCCCCCCCceee---cCCC-----------------Cccceeee-ccc
Q 017658          154 LCNREEFLKVLNLASI-DVVS----VKLWFDKKVTVPNVSNACS---GFGD-----------------SLAWTFFD-LNK  207 (368)
Q Consensus       154 l~~~~~~~~i~~l~~~-~~~~----v~l~~~~~~~~~~~~~~~~---~~~~-----------------~~~~~~~d-~s~  207 (368)
                      ++ .++  .++++.+. ++.+    .++..+..-..+.|+..+.   +.+.                 ...-..+. .|.
T Consensus       332 LP-eef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~  408 (561)
T KOG4254|consen  332 LP-EEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS  408 (561)
T ss_pred             CC-chh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence            74 333  44555442 2221    2233222111122322221   1110                 00000111 133


Q ss_pred             cccccCCCCCeEEEEEe-ecCCCC-------CCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccc-------
Q 017658          208 IYDEHKDDSATVIQADF-YHANEL-------MPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH-------  272 (368)
Q Consensus       208 ~~~~~~~~~~~v~~~~~-~~~~~~-------~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~-------  272 (368)
                      +.+.+.+++.+++.+.. |....|       .+..+++..+++++.+++++|++++ +++.+.+. +|.+..+       
T Consensus       409 lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvg-TP~t~qr~l~~~~G  486 (561)
T KOG4254|consen  409 LDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVG-TPPTHQRFLGRPGG  486 (561)
T ss_pred             cCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecC-CCchhhHHhcCCCC
Confidence            34456667777765532 222223       3344677889999999999999987 56544443 3332221       


Q ss_pred             -cCCC---C---cCCCCCC-----CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          273 -FFPG---S---YKYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       273 -~~pg---~---~~~~p~~-----~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                       +.++   .   +-.+|..     .+|++|||+||+.+++|.   ++.+|.  |+++|...+.+.++
T Consensus       487 n~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGg---GV~a~a--G~~~A~~a~~~~~~  548 (561)
T KOG4254|consen  487 NIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGG---GVMAAA--GRLAAHSAILDRKL  548 (561)
T ss_pred             cccCcccccccccccCCccccccCCCCCCceEEecCCCCCCC---Cccccc--hhHHHHHHhhhhhh
Confidence             1121   1   1135544     689999999999997753   344443  89999888777663

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=2.5e-15  Score=146.16  Aligned_cols=229  Identities=22%  Similarity=0.265  Sum_probs=156.4

Q ss_pred             cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHH--hhhhccccCc
Q 017658           81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCNR  157 (368)
Q Consensus        81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~--ll~~~~l~~~  157 (368)
                      .+|+ +.++..++.     |.+|+++.+|.+|.+.++ +.+ .++.. +..+.+|+||+|+|+.+++.  +...+.+ +.
T Consensus       215 ~~G~-~~v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L-p~  285 (501)
T KOG0029|consen  215 KGGY-EPVVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL-PR  285 (501)
T ss_pred             hCCc-cHHHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC-cH
Confidence            5775 457777764     899999999999999875 542 34433 44599999999999999986  4444444 24


Q ss_pred             hhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCC-C--ccc--eeeeccccccccCCCCCeEEEEEee--cCCCC
Q 017658          158 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-S--LAW--TFFDLNKIYDEHKDDSATVIQADFY--HANEL  230 (368)
Q Consensus       158 ~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~--~~~--~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~  230 (368)
                      ...++|+.++.....++.+.|++.+|.+.  .-+++... .  ..+  .+++..   +.   .+..++.+...  .+..+
T Consensus       286 ~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~--~d~fg~~~~~~~~~~~~~f~~~~---~~---~~~~~l~~~~~~~~a~~~  357 (501)
T KOG0029|consen  286 WKQEAIDRLGFGLVNKVILEFPRVFWDQD--IDFFGIVPETSVLRGLFTFYDCK---PV---AGHPVLMSVVVGEAAERV  357 (501)
T ss_pred             HHHHHHHhcCCCceeEEEEEeccccCCCC--cCeEEEccccccccchhhhhhcC---cc---CCCCeEEEEehhhhhHHH
Confidence            55789999999999999999999999522  11333211 1  111  122222   11   12233322222  23456


Q ss_pred             CCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCc------cccCCCCcCC-CCCCCCCCCc-eEEeccccccCC
Q 017658          231 MPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSYKY-MMRGFTSFPN-LFMAGDWITTRH  302 (368)
Q Consensus       231 ~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~------~~~~pg~~~~-~p~~~~~~~~-L~laGd~~~~~~  302 (368)
                      ..++++++++.++..|+++|++.....+++..+.+|....      +...++.... ......++.| +||||+++...|
T Consensus       358 ~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~  437 (501)
T KOG0029|consen  358 ETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKY  437 (501)
T ss_pred             hcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccC
Confidence            7889999999999999999994333457777887784331      1122222111 1223467777 999999999888


Q ss_pred             CCccchHHhHHHHHHHHHHHHHhCC
Q 017658          303 GSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       303 ~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                      + ++|+||+.||..+|..|+..+..
T Consensus       438 ~-~tm~GA~~sG~~~a~~i~~~~~~  461 (501)
T KOG0029|consen  438 P-GTMHGAYLSGLRAASDILDSLIE  461 (501)
T ss_pred             C-CchHHHHHhhHHHHHHHHHHHHh
Confidence            8 89999999999999999999883

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.64  E-value=1.1e-14  Score=142.87  Aligned_cols=288  Identities=13%  Similarity=0.069  Sum_probs=155.1

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD   94 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~   94 (368)
                      ..+...|+.+++... +..+..+.++........ .+|.+.+ +. ..++...  .  ....+.|++||| .+|+++|++
T Consensus       162 ~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~-a~-~~~~~~~--~--~~~G~~~p~GG~-~al~~aL~~  232 (487)
T COG1233         162 LGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP-AL-YLLLSHL--G--LSGGVFYPRGGM-GALVDALAE  232 (487)
T ss_pred             HHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh-HH-HHHHHHh--c--ccCCeeeeeCCH-HHHHHHHHH
Confidence            345778889999886 766666666654322222 5566665 22 2222211  2  134567899997 579999999


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccC-ccceE
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA-SIDVV  172 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~-~~~~~  172 (368)
                      .++++||+|+++++|++|.+++  |+.++++.. |+.+++|.||+++.+.....+.+....    . +...... ....+
T Consensus       233 ~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~----~-~~~~~~~~~~~al  305 (487)
T COG1233         233 LAREHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR----P-RYRGSYLKSLSAL  305 (487)
T ss_pred             HHHHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhhh----h-ccccchhhhhHHH
Confidence            9999999999999999999988  665556665 458999999999999555555443210    0 0001111 11122


Q ss_pred             EEEEEecCCCCCCCCCceeecCCCC----cc---------ceeee-ccccccccCCCCCeEEEEEee--cCCCCCCCCHH
Q 017658          173 SVKLWFDKKVTVPNVSNACSGFGDS----LA---------WTFFD-LNKIYDEHKDDSATVIQADFY--HANELMPLKDD  236 (368)
Q Consensus       173 ~v~l~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~d-~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~  236 (368)
                      ..++.++.........+.++..+..    ..         +.+.. .+...+...+++++.+...+.  +...+.+..++
T Consensus       306 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~  385 (487)
T COG1233         306 SLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKE  385 (487)
T ss_pred             HhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHH
Confidence            2333333320001011111111100    00         11111 222223344344441111222  21122223345


Q ss_pred             HHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccC--------------CCCcCCCCCC-CCCCCceEEeccccccC
Q 017658          237 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--------------PGSYKYMMRG-FTSFPNLFMAGDWITTR  301 (368)
Q Consensus       237 e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~--------------pg~~~~~p~~-~~~~~~L~laGd~~~~~  301 (368)
                      ++.+. +..+++.+|++++ .+++..+. ++..+..+.              ......||.. .|+++|||+||+++++|
T Consensus       386 ~~~~~-~~~~~~~~p~~~~-~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG  462 (487)
T COG1233         386 SLADA-IDALEELAPGLRD-RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG  462 (487)
T ss_pred             HHHHH-HHHHhhcCCCccc-ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC
Confidence            55555 6689999999987 56655554 332221111              1122345544 48999999999999875


Q ss_pred             CCCccchHHhHHHHHHHHHHHHH
Q 017658          302 HGSWSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       302 ~~~~~~egA~~Sg~~aA~~Il~~  324 (368)
                      -   ++.++..++..++..+..+
T Consensus       463 ~---Gv~g~~g~~~a~~~~~~~~  482 (487)
T COG1233         463 G---GVPGVPGSAAAVALLIDLD  482 (487)
T ss_pred             C---CcchhhhhHHHHHhhhccc
Confidence            3   4555555555555544443

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.63  E-value=1.2e-14  Score=133.51  Aligned_cols=293  Identities=13%  Similarity=0.120  Sum_probs=194.2

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH---------------Hhhc--------
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI---------------ILAH--------   71 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~---------------~~~~--------   71 (368)
                      .+..++|+.+|++| ++++++.+++++|||.++|+++++++|+......+...               +-+.        
T Consensus       151 ~~~~dESV~sF~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~  229 (491)
T KOG1276|consen  151 DPSADESVESFARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETA  229 (491)
T ss_pred             CCCccccHHHHHHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccch
Confidence            45678999999998 78999999999999999999999999997654433211               1000        


Q ss_pred             ------CCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce-EEecCEEEEeeC
Q 017658           72 ------QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TYSAGAVVLAVG  141 (368)
Q Consensus        72 ------~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~-~~~ad~VV~a~p  141 (368)
                            .+.+.+.-.+||+ +.|.+++.+.|.+..+.|.++-++..+..... |+ |.+.+.   +. .+..++++.|+|
T Consensus       230 ~~~~~~~e~~~~~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~-~~~tl~~~~~~~~~~~~~~~~t~~  306 (491)
T KOG1276|consen  230 LSAQAKKEKWTMFSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRS-GN-WSLTLVDHSGTQRVVVSYDAATLP  306 (491)
T ss_pred             hhhhhcccccchhhhhhhH-hHhHHHHHHHhcccchhhhccccccccccccc-CC-ceeEeEcCCCceeeeccccccccc
Confidence                  1122222347896 78999999999999999999999999987654 54 344443   32 456677777999


Q ss_pred             hhhHHHhhhhccccCchhHHhhhccCccceEEEEEEecCC-CCCCC-CCceeecCCC----CccceeeeccccccccCCC
Q 017658          142 ISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVPN-VSNACSGFGD----SLAWTFFDLNKIYDEHKDD  215 (368)
Q Consensus       142 ~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~-~~~~~-~~~~~~~~~~----~~~~~~~d~s~~~~~~~~~  215 (368)
                      +..+.++++...   ......+.++.|.+++.|.+.|+++ ...+. .+..+....+    ..-.++||.....++.+  
T Consensus       307 ~~k~a~ll~~~~---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~--  381 (491)
T KOG1276|consen  307 AVKLAKLLRGLQ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSP--  381 (491)
T ss_pred             hHHhhhhccccc---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCC--
Confidence            999999988753   2334677888999999998888764 32222 3333322111    01123566432222221  


Q ss_pred             CCeEEEEEee---cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-----CCC
Q 017658          216 SATVIQADFY---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-----FTS  287 (368)
Q Consensus       216 ~~~v~~~~~~---~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~-----~~~  287 (368)
                      ...++...+.   ........+.+|+++.+.++|.+++. ++. ++....++-|+..+|+|+.|+....-..     ..+
T Consensus       382 s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lg-i~~-~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~  459 (491)
T KOG1276|consen  382 SPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLG-ISN-KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSP  459 (491)
T ss_pred             CceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhC-CCC-CcccccceehhhcccceecchHHHHHHHHHHHHhCC
Confidence            2122211111   11112346789999999999999984 332 3444455569999999999976432111     123


Q ss_pred             CCceEEeccccccCCCCccchHHhHHHHHHHHHHH
Q 017658          288 FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  322 (368)
Q Consensus       288 ~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il  322 (368)
                      -.+|+++|.|...    .++..++.||+.+|..++
T Consensus       460 g~~l~l~G~~y~G----v~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  460 GLGLFLGGNHYGG----VSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             CCceEeeccccCC----CChhHHHHhhHHHHHhhc
Confidence            3589999999963    356789999999887764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.60  E-value=1.8e-15  Score=131.15  Aligned_cols=220  Identities=15%  Similarity=0.102  Sum_probs=144.7

Q ss_pred             CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChhhHHHhhhhc--cccCc
Q 017658           82 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQELIKNS--ILCNR  157 (368)
Q Consensus        82 GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~~l~~ll~~~--~l~~~  157 (368)
                      -||+ +|++.|+.     ..+|+++++|++|...+  + .|.+.++  ++...||.||+|+|++++..|+...  .+ +.
T Consensus       105 pgms-alak~LAt-----dL~V~~~~rVt~v~~~~--~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~-p~  174 (331)
T COG3380         105 PGMS-ALAKFLAT-----DLTVVLETRVTEVARTD--N-DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDL-PA  174 (331)
T ss_pred             cchH-HHHHHHhc-----cchhhhhhhhhhheecC--C-eeEEEecCCCcccccceEEEecCCCcchhhcCcccccc-hH
Confidence            4654 56665543     45799999999999885  4 4778885  3578999999999999999888542  22 23


Q ss_pred             hhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCH
Q 017658          158 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKD  235 (368)
Q Consensus       158 ~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~  235 (368)
                      ..++.+..+.|.|++.+.+.|..+...+.+.  .+..+..+.|.-.|.++  +... +.+.++.+...+  ...+.+.++
T Consensus       175 ~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~  249 (331)
T COG3380         175 ALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPA  249 (331)
T ss_pred             HHHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCH
Confidence            4678888999999988888887766433332  22223455674334332  1111 233344344332  233456777


Q ss_pred             HHHHHHHHHHHhhhcc-CCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHH
Q 017658          236 DQVVAKAVSYLSKCIK-DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTG  314 (368)
Q Consensus       236 ~e~~~~~~~~l~~~~p-~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg  314 (368)
                      ++.+..+......+++ .+.  ++.....++|+++.+.-..+..   +.....-.+||+||||++.    +-+|||+.||
T Consensus       250 e~~i~~l~aA~~~~~~~~~~--~p~~s~~H~WrYA~P~~~~~~~---~L~ad~~~~l~~cGDwc~G----grVEgA~LSG  320 (331)
T COG3380         250 EQVIVALRAAAQELDGDRLP--EPDWSDAHRWRYAIPNDAVAGP---PLDADRELPLYACGDWCAG----GRVEGAVLSG  320 (331)
T ss_pred             HHHHHHHHHhhhhccCCCCC--cchHHHhhccccccccccccCC---ccccCCCCceeeecccccC----cchhHHHhcc
Confidence            7777666666666665 333  4555666789999875443321   1111344689999999974    5789999999


Q ss_pred             HHHHHHHHHHh
Q 017658          315 LEAANRVVDYL  325 (368)
Q Consensus       315 ~~aA~~Il~~~  325 (368)
                      ..+|.+|++.+
T Consensus       321 lAaA~~i~~~L  331 (331)
T COG3380         321 LAAADHILNGL  331 (331)
T ss_pred             HHHHHHHHhcC
Confidence            99999998753

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.55  E-value=1.6e-13  Score=128.08  Aligned_cols=237  Identities=17%  Similarity=0.183  Sum_probs=148.1

Q ss_pred             cCCcchhhhHHHHHHHHHc----C--CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh---hh
Q 017658           81 RGTLREKIFEPWMDSMRTR----G--CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL---IK  150 (368)
Q Consensus        81 ~GG~~~~L~~~l~~~l~~~----G--~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l---l~  150 (368)
                      .-|+ ..+.+.|++.+.+.    |  .+++++++|.+|..+++ ++|. |+|. |+.++||+||||++..++++-   +.
T Consensus       219 ~kGy-~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF  295 (498)
T KOG0685|consen  219 KKGY-KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEVK-LRCSDGEVFHADHVIVTVSLGVLKEQHHKLF  295 (498)
T ss_pred             hhHH-HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcEE-EEEeCCcEEeccEEEEEeechhhhhhhhhhc
Confidence            4464 46888888765432    2  46778899999999865 7665 6665 889999999999999999862   23


Q ss_pred             hccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCcee--ecCCCC--------ccceeeeccccccccCCCCCeEE
Q 017658          151 NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDS--------LAWTFFDLNKIYDEHKDDSATVI  220 (368)
Q Consensus       151 ~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~d~s~~~~~~~~~~~~v~  220 (368)
                      .+++| ..+.++|+.+.+....+++|-|.+++|++. .+.+  .-.+..        ..| +-+.....+-..  ...++
T Consensus       296 ~P~LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~-~~~i~~lw~~e~l~e~r~~~~~w-~~~~~~f~~v~~--~~~vL  370 (498)
T KOG0685|consen  296 VPPLP-AEKQRAIERLGFGTVNKIFLEFEEPFWPSD-WNGIQLLWLDEDLEELRSTLDAW-EEDIMGFQPVSW--APNVL  370 (498)
T ss_pred             CCCCC-HHHHHHHHhccCCccceEEEEccCCCCCCC-CceeEEEEecCcHHHHhhhhHHH-HhhceEEEEcCc--chhhh
Confidence            33453 567789999999999999999999988542 2211  111100        011 001111111000  11343


Q ss_pred             EEEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeec------CCCccccCCCCcC------CCCCC--
Q 017658          221 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF------PKSLTHFFPGSYK------YMMRG--  284 (368)
Q Consensus       221 ~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~------~~~~~~~~pg~~~------~~p~~--  284 (368)
                      ..+..  .+.-..+++++++.+.+...|++++++..-+++....-..|      ++++....+|+..      ..|..  
T Consensus       371 ~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~  450 (498)
T KOG0685|consen  371 LGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLT  450 (498)
T ss_pred             heeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCcc
Confidence            33222  22234678999999999999999997654223322222223      2222222223211      11221  


Q ss_pred             -CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          285 -FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       285 -~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                       .++-+.+.|||++++..+- .++.||+.||++.|++|+..+.
T Consensus       451 ~~~~~p~I~FAGEaThr~~Y-sTthGA~~SG~REA~RL~~~y~  492 (498)
T KOG0685|consen  451 LVTGRPQILFAGEATHRTFY-STTHGAVLSGWREADRLLEHYE  492 (498)
T ss_pred             ccCCCceEEEccccccccce-ehhhhhHHhhHHHHHHHHHHHH
Confidence             2345689999999986555 6999999999999999999765

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.43  E-value=5.1e-11  Score=116.42  Aligned_cols=303  Identities=14%  Similarity=0.107  Sum_probs=175.3

Q ss_pred             hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHh---hcCCCcceeeecCCcchhhhH
Q 017658           14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFE   90 (368)
Q Consensus        14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~---~~~~~~~~~~~~GG~~~~L~~   90 (368)
                      -++||+.|+.||+++..+.. ....+|..     .++..+..||.++...+++++.   +......+.+.++...++|+.
T Consensus       157 e~~Ld~~tI~d~f~~~Ff~t-~Fw~~w~t-----~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~  230 (576)
T PRK13977        157 EEKLDDKTIEDWFSPEFFET-NFWYYWRT-----MFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVL  230 (576)
T ss_pred             HHHhCCcCHHHHHhhcCchh-HHHHHHHH-----HHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHH
Confidence            48899999999999866644 34444443     3566899999999999987731   222233444556667899999


Q ss_pred             HHHHHHHHcCCEEeccceeeeEEec--CCCceEEEEEEC--Ce-----EEecCEEEEeeChhhHHHhhhhcccc------
Q 017658           91 PWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCG--KE-----TYSAGAVVLAVGISTLQELIKNSILC------  155 (368)
Q Consensus        91 ~l~~~l~~~G~~i~~~t~V~~I~~~--~~~g~v~~v~~~--g~-----~~~ad~VV~a~p~~~l~~ll~~~~l~------  155 (368)
                      +|.+.|+++|++|+++++|++|..+  ++.++|++|.+.  |+     ....|.||+|.+.-+-..=+++..-+      
T Consensus       231 PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~  310 (576)
T PRK13977        231 PLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNRE  310 (576)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCC
Confidence            9999999999999999999999985  222568888763  22     24789999998765432222211000      


Q ss_pred             -CchhH--Hhhh----ccCc----------cceEEEEEEecCC-C-------CCCCCCc------eeecCCCCccceeee
Q 017658          156 -NREEF--LKVL----NLAS----------IDVVSVKLWFDKK-V-------TVPNVSN------ACSGFGDSLAWTFFD  204 (368)
Q Consensus       156 -~~~~~--~~i~----~l~~----------~~~~~v~l~~~~~-~-------~~~~~~~------~~~~~~~~~~~~~~d  204 (368)
                       ...|.  +.+.    .++.          +.+.+..+-++.+ +       ....|..      .+..+. ..+|. .+
T Consensus       311 ~~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~-dS~W~-~s  388 (576)
T PRK13977        311 LGGSWTLWKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFK-DSNWL-MS  388 (576)
T ss_pred             CCccHHHHHHHHhcCccCCChhhhcCCcccceEEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEe-cCCee-EE
Confidence             01110  1221    1110          1111111211111 1       0001111      111111 12342 22


Q ss_pred             cc-ccccccCCCCCeEEEEEeecC----------CCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEE----eecCCC
Q 017658          205 LN-KIYDEHKDDSATVIQADFYHA----------NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKI----RRFPKS  269 (368)
Q Consensus       205 ~s-~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~----~~~~~~  269 (368)
                      .+ ..+|.+++.+..+..++.|..          .+..+++.+|+.++++-+|.  +|...-.++.....    ...|+.
T Consensus       389 ~~v~~QP~F~~Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~--~~~~~~~~i~~~~~~~ip~~MP~i  466 (576)
T PRK13977        389 ITVNRQPHFKNQPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLG--VPEDKIEELAADSANTIPVMMPYI  466 (576)
T ss_pred             EEecCCCCCCCCCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcC--CchhhHHHHHhhcCceEeeccchh
Confidence            22 234556544444443444411          23457899999999888873  22110001220111    114555


Q ss_pred             ccccCCCCcCCCCCCCC-CCCceEEeccccccCCC-CccchHHhHHHHHHHHHHHHHhC
Q 017658          270 LTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHG-SWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       270 ~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~-~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ...+.|-....||.... +..||-|.|.++..... +.++|-++.+|++|+-.++.--+
T Consensus       467 ta~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~~~~  525 (576)
T PRK13977        467 TSQFMPRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLGVDR  525 (576)
T ss_pred             hhhhCCCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhCCCC
Confidence            55666766667886653 57899999999964222 27899999999999999887654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.38  E-value=1.7e-11  Score=110.16  Aligned_cols=150  Identities=15%  Similarity=0.048  Sum_probs=114.2

Q ss_pred             chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCC------cceeeecCCc
Q 017658           11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN------FDLVWCRGTL   84 (368)
Q Consensus        11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~------~~~~~~~GG~   84 (368)
                      ..+...-.++|+.+||+++++++.+.+.++.|+..+++.++..+++...+...+...  .+++.      ..+....|| 
T Consensus       142 ~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~--~nhGll~l~~rp~wrtV~gg-  218 (447)
T COG2907         142 PSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT--DNHGLLYLPKRPTWRTVAGG-  218 (447)
T ss_pred             chhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH--hccCceecCCCCceeEcccc-
Confidence            444566688999999999999999999999999999999988887776555444322  22221      111233577 


Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL  164 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~  164 (368)
                      +...+++|++.+   +++|.++++|.+|..-.+ | |+.+..+|+...||.||.++.+++...|++++.   +++.+.+.
T Consensus       219 S~~yvq~laa~~---~~~i~t~~~V~~l~rlPd-G-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s---p~e~qll~  290 (447)
T COG2907         219 SRAYVQRLAADI---RGRIETRTPVCRLRRLPD-G-VVLVNADGESRRFDAVVIATHPDQALALLDEPS---PEERQLLG  290 (447)
T ss_pred             hHHHHHHHhccc---cceeecCCceeeeeeCCC-c-eEEecCCCCccccceeeeecChHHHHHhcCCCC---HHHHHHHH
Confidence            677888887555   478999999999998775 6 554555688999999999999999999999863   45667778


Q ss_pred             ccCccce
Q 017658          165 NLASIDV  171 (368)
Q Consensus       165 ~l~~~~~  171 (368)
                      .+.|...
T Consensus       291 a~~Ys~n  297 (447)
T COG2907         291 ALRYSAN  297 (447)
T ss_pred             hhhhhhc
Confidence            8888643

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.97  E-value=8.6e-09  Score=99.61  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhhHHHHH
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMD   94 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L~~~l~~   94 (368)
                      ++.+|+.||++++++++...+ ++..++.........+.++...+..+..+.  ++.-+...+.||.||++ .|++++++
T Consensus       163 ~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g-~L~qal~r  240 (443)
T PTZ00363        163 LKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLG-GLPQAFSR  240 (443)
T ss_pred             cccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHH-HHHHHHHH
Confidence            568999999999999998765 333222221111111223333333332221  12111233468899975 69999999


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      .++..|++++++++|++|..+++ |++++|++. |+++.|+.||++...
T Consensus       241 ~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s~  288 (443)
T PTZ00363        241 LCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPSY  288 (443)
T ss_pred             HHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECccc
Confidence            99999999999999999998764 677888885 779999999995443

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.79  E-value=1.5e-06  Score=83.08  Aligned_cols=294  Identities=14%  Similarity=0.104  Sum_probs=162.0

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC---CcceeeecCCcchhhhHH
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEP   91 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~GG~~~~L~~~   91 (368)
                      ++|++.++.||+....+..    .||-  ++++.++-....||.++...+++++-.-.+   ...+.+.+-..+++++.+
T Consensus       139 ~~L~~~~I~d~F~~~FF~S----nFW~--~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~P  212 (500)
T PF06100_consen  139 EDLGDKRIEDWFSESFFES----NFWY--MWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILP  212 (500)
T ss_pred             HHhCcccHHHhcchhhhcC----chhH--hHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHH
Confidence            6789999999998643322    3443  345566677889999999988888522111   122223355567899999


Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCc--eEEEEEEC--Ce--EE---ecCEEEEeeChhhHHHhhhhcccc-------
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVCG--KE--TY---SAGAVVLAVGISTLQELIKNSILC-------  155 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g--~v~~v~~~--g~--~~---~ad~VV~a~p~~~l~~ll~~~~l~-------  155 (368)
                      |.+.|+++|+++++||+|+.|..+.+++  .++.+.+.  |+  ++   .-|.|+.|.+.-+-..-.++..-+       
T Consensus       213 l~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~~p~~~~~~~  292 (500)
T PF06100_consen  213 LIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGSTYGDNDTPPPLNKEL  292 (500)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccccCCCCCCCCCCCCC
Confidence            9999999999999999999999864312  24444442  32  33   568999987764322211111000       


Q ss_pred             CchhH--Hhhh----ccC----------ccce-EEEEEEecCC-C-------CCCCC------CceeecCCCCccceeee
Q 017658          156 NREEF--LKVL----NLA----------SIDV-VSVKLWFDKK-V-------TVPNV------SNACSGFGDSLAWTFFD  204 (368)
Q Consensus       156 ~~~~~--~~i~----~l~----------~~~~-~~v~l~~~~~-~-------~~~~~------~~~~~~~~~~~~~~~~d  204 (368)
                      ...|.  +.|.    .++          ...+ .+..+-++.+ +       .-..|      .+.+..+ ...+|. .+
T Consensus       293 ~~~W~LW~~la~k~~~FG~P~~F~~~~~~s~w~eSfTvT~~d~~~~~~i~~lt~~~p~~g~~~tGgliT~-~DS~Wl-mS  370 (500)
T PF06100_consen  293 GGSWSLWKNLAAKSPDFGNPEKFCTRIPESKWFESFTVTLKDPKFFDYIEKLTGNDPYSGKVGTGGLITF-KDSNWL-MS  370 (500)
T ss_pred             CchHHHHHHHHhcCcCCCChhhhcCCcccceeEEEEEEEecChHHHHHHHHHHCCCCCcCccCcCceeEe-ccCCeE-EE
Confidence            01110  1111    111          1111 1112222111 1       10011      0111111 122342 22


Q ss_pred             cc-ccccccCCCCCeEEEEEeecC----------CCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEE----eecCCC
Q 017658          205 LN-KIYDEHKDDSATVIQADFYHA----------NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKI----RRFPKS  269 (368)
Q Consensus       205 ~s-~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~----~~~~~~  269 (368)
                      .+ ..+|.+++.+..+..++.|+.          .+..+++.+|+.++++.+|.  +|.....++.....    .-.|+.
T Consensus       371 ~~i~~QP~F~~QP~dv~V~WgYgL~pd~~GnyVkKpM~eCtG~EIl~ElL~HLg--~~~~~~~~~~~~~~~tiP~~MP~i  448 (500)
T PF06100_consen  371 ITIPRQPHFPDQPEDVQVFWGYGLFPDKEGNYVKKPMLECTGEEILTELLYHLG--FPDDEIEELAKQSTNTIPCMMPYI  448 (500)
T ss_pred             EEECCCCccCCCCCCeEEEEEEecccCCCCCccCCchhhCChHHHHHHHHHhcC--CChhhhhHhhccCceEEEeccccc
Confidence            22 234556544444444444421          23456899999999988885  33321101110111    124555


Q ss_pred             ccccCCCCcCCCCCCCC-CCCceEEeccccccCCC-CccchHHhHHHHHHH
Q 017658          270 LTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHG-SWSQERSYVTGLEAA  318 (368)
Q Consensus       270 ~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~-~~~~egA~~Sg~~aA  318 (368)
                      ...+.|-....||...+ +..||-|.|.++..... +.++|-++.+|++|+
T Consensus       449 ts~fmpR~~gDRP~VvP~g~~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV  499 (500)
T PF06100_consen  449 TSQFMPRAKGDRPQVVPEGSTNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV  499 (500)
T ss_pred             hhhccCCCCCCCCCcCCCCcceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence            55666766667886653 56899999999964222 268999999999885

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.57  E-value=1.3e-05  Score=75.08  Aligned_cols=195  Identities=12%  Similarity=0.120  Sum_probs=108.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  165 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~  165 (368)
                      ..++..+.+.++++|++|+.+++|++|..++  +++++|.++++++.||.||+|++++.-. +.+ ..            
T Consensus       137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~-~~------------  200 (337)
T TIGR02352       137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP-LP------------  200 (337)
T ss_pred             HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc-CC------------
Confidence            4688999999999999999999999999876  6677888776689999999999997654 433 11            


Q ss_pred             cCccceEEEEEEecCCC-C-CCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHH
Q 017658          166 LASIDVVSVKLWFDKKV-T-VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV  243 (368)
Q Consensus       166 l~~~~~~~v~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~  243 (368)
                      +....  ...+.+..+. . ...+..... .+ .  ..++     .+ .  +++.++.-.......+....+++..+.++
T Consensus       201 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~-~~-~--~~y~-----~p-~--~~g~~~iG~~~~~~~~~~~~~~~~~~~l~  266 (337)
T TIGR02352       201 LRPVR--GQPLRLEAPAVPLLNRPLRAVV-YG-R--RVYI-----VP-R--RDGRLVVGATMEESGFDTTPTLGGIKELL  266 (337)
T ss_pred             ccccC--ceEEEeeccccccCCcccceEE-Ec-C--CEEE-----EE-c--CCCeEEEEEeccccCccCCCCHHHHHHHH
Confidence            11111  1112222110 0 000100000 00 0  0011     01 0  12333222112112233233456778899


Q ss_pred             HHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC--CCCCceEEeccccccCCCCccchHHhHHHHHHHHHH
Q 017658          244 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV  321 (368)
Q Consensus       244 ~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~--~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~I  321 (368)
                      +.+.++||.+...++...    |-. +..++++.   .|...  ...+|+|+++.+-  ++   ++--+...|+..|+.|
T Consensus       267 ~~~~~~~P~l~~~~~~~~----~~g-~r~~t~D~---~piig~~~~~~~~~~~~g~~--g~---G~~~~p~~g~~la~~i  333 (337)
T TIGR02352       267 RDAYTILPALKEARLLET----WAG-LRPGTPDN---LPYIGEHPEDRRLLIATGHY--RN---GILLAPATAEVIADLI  333 (337)
T ss_pred             HHHHHhCCCcccCcHHHh----eec-CCCCCCCC---CCEeCccCCCCCEEEEcccc--cC---ceehhhHHHHHHHHHH
Confidence            999999998875444322    211 11123332   23221  2357999988655  23   3445778899999998


Q ss_pred             HH
Q 017658          322 VD  323 (368)
Q Consensus       322 l~  323 (368)
                      +.
T Consensus       334 ~~  335 (337)
T TIGR02352       334 LG  335 (337)
T ss_pred             hc
Confidence            74

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.42  E-value=4.5e-05  Score=73.81  Aligned_cols=201  Identities=12%  Similarity=0.036  Sum_probs=107.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  165 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~  165 (368)
                      ..++..|.+.++++|++|+++++|++|..++  +++++|+++++++.||+||+|++++.. .+++..... .    .+..
T Consensus       201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~-~l~~~~g~~-~----pi~p  272 (416)
T PRK00711        201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYST-ALLKPLGVD-I----PVYP  272 (416)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchH-HHHHHhCCC-c----ccCC
Confidence            3688889999999999999999999998876  567678777778999999999999753 243321100 0    0111


Q ss_pred             cCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Q 017658          166 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY  245 (368)
Q Consensus       166 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~  245 (368)
                      .+   ...+.+-++....  .+...+.  +... ...+      +.   .++.++.........+....+.+..+.+.+.
T Consensus       273 ~r---g~~~~~~~~~~~~--~p~~~~~--~~~~-~~~~------~~---~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~  335 (416)
T PRK00711        273 LK---GYSLTVPITDEDR--APVSTVL--DETY-KIAI------TR---FDDRIRVGGMAEIVGFDLRLDPARRETLEMV  335 (416)
T ss_pred             cc---ceEEEEecCCCCC--CCceeEE--eccc-CEEE------ee---cCCceEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            11   1111221221110  1110010  0000 0000      00   1223321111111112222234566778888


Q ss_pred             HhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017658          246 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       246 l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~-~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~  324 (368)
                      +.++||.+.+..+...    |.. +..++++..   |.. ..+.+|+|++..+.  ++|   +.-|..+|+..|+.|+..
T Consensus       336 ~~~~~P~l~~~~~~~~----w~G-~r~~t~D~~---PiIG~~~~~gl~~a~G~~--g~G---~~~ap~~g~~la~li~g~  402 (416)
T PRK00711        336 VRDLFPGGGDLSQATF----WTG-LRPMTPDGT---PIVGATRYKNLWLNTGHG--TLG---WTMACGSGQLLADLISGR  402 (416)
T ss_pred             HHHHCCCcccccccce----eec-cCCCCCCCC---CEeCCcCCCCEEEecCCc--hhh---hhhhhhHHHHHHHHHcCC
Confidence            9999999875444322    211 112333322   211 12358999988665  333   445888999999988754

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.41  E-value=7.9e-06  Score=76.88  Aligned_cols=63  Identities=24%  Similarity=0.282  Sum_probs=52.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      ..+++.|.+.+++.|++|+++++|++|..++  ++|++|.++++.+.||+||+|++++... |++.
T Consensus       147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~  209 (358)
T PF01266_consen  147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPL  209 (358)
T ss_dssp             HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHT
T ss_pred             cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeec
Confidence            4699999999999999999999999999988  7788899987679999999999987544 5544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=98.30  E-value=1.4e-05  Score=76.85  Aligned_cols=120  Identities=18%  Similarity=0.168  Sum_probs=82.8

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCch-hhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhhHHH
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPW   92 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L~~~l   92 (368)
                      +++++|+.++++++++++...+.+...  .+++..+.. +-++...+..++.++  ++.-+...+.||..|.++ |++++
T Consensus       162 ~~~~~~~~e~~~~f~L~~~~~~~i~ha--iaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~F  238 (438)
T PF00996_consen  162 DPEKKTFQELLKKFGLSENLIDFIGHA--IALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAF  238 (438)
T ss_dssp             -TTTSBHHHHHHHTTS-HHHHHHHHHH--TS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHH
T ss_pred             ccccccHHHHHHhcCCCHHHHHHHHHh--hhhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHH
Confidence            345899999999999999876544322  122222211 234556666666653  333234466789988775 99999


Q ss_pred             HHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEe
Q 017658           93 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  139 (368)
Q Consensus        93 ~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a  139 (368)
                      .+...=.||...||++|.+|.++++ |++.+|..+|+++.|+.||+.
T Consensus       239 cRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~d  284 (438)
T PF00996_consen  239 CRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIGD  284 (438)
T ss_dssp             HHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTEEEEESEEEEE
T ss_pred             HHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCEEEEcCEEEEC
Confidence            9988888999999999999999766 888899888999999999963

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=98.30  E-value=1.7e-05  Score=74.83  Aligned_cols=119  Identities=19%  Similarity=0.212  Sum_probs=78.6

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD   94 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~   94 (368)
                      -.+-+.|.+|||++.|+++.+.+.++.+.+..-|+.+. ++++..  ....  +.+..  .+..-.+|| +..+.+.|. 
T Consensus        65 ~~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~--G~vS--la~a~--~gl~sV~GG-N~qI~~~ll-  135 (368)
T PF07156_consen   65 LNLTKVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFA--GLVS--LAGAT--GGLWSVEGG-NWQIFEGLL-  135 (368)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhh--hhee--eeecc--CCceEecCC-HHHHHHHHH-
Confidence            44567899999999999999999999988877787753 344432  2211  11211  122234688 677888885 


Q ss_pred             HHHHcCCEEeccceeeeE-EecCCCce-EEEEEEC---Ce-EEecCEEEEeeChhhHH
Q 017658           95 SMRTRGCEFLDGRRVTDF-IYDEERCC-ISDVVCG---KE-TYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I-~~~~~~g~-v~~v~~~---g~-~~~ad~VV~a~p~~~l~  146 (368)
                        ++.|++| ++++|++| ...++ +. .+.|...   +. .-.+|.||+|+|.....
T Consensus       136 --~~S~A~v-l~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~  189 (368)
T PF07156_consen  136 --EASGANV-LNTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF  189 (368)
T ss_pred             --HHccCcE-ecceeEEEEeccCC-CceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence              5678999 99999999 44443 32 2334333   22 34679999999996443

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.11  E-value=0.00071  Score=65.31  Aligned_cols=200  Identities=13%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhcc
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL  166 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l  166 (368)
                      .+...|.+.++++|++++.+++|++|...++ +++++|+++++++.+++||+++..+.-. +....... .+       +
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~~-l~~~~g~~-~~-------~  253 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSSV-VAAMAGFR-LP-------I  253 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhHH-HHHHcCCC-CC-------c
Confidence            4666778888999999999999999986533 5567788776689999998888876532 22211000 00       0


Q ss_pred             CccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeec-CCCCCCCCHHHHHHHHHHH
Q 017658          167 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAVSY  245 (368)
Q Consensus       167 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~e~~~~~~~~  245 (368)
                      ...   ...+.+.++.. +.....+.. . .... ++     .+   .+++.++...... ........+.+..+.+++.
T Consensus       254 ~~~---~~~~~~~~~~~-~~~~~~~~~-~-~~~~-y~-----~p---~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~  318 (407)
T TIGR01373       254 ESH---PLQALVSEPLK-PIIDTVVMS-N-AVHF-YV-----SQ---SDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAA  318 (407)
T ss_pred             Ccc---cceEEEecCCC-CCcCCeEEe-C-CCce-EE-----EE---cCCceEEEecCCCCCCccCcCCCHHHHHHHHHH
Confidence            011   11111222221 110011110 0 0000 11     01   0223333221111 1111122345677888999


Q ss_pred             HhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017658          246 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       246 l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~-~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~  324 (368)
                      +.++||++++..+..    .|. +...++|+..   |.. ..+.+|+|++.-+.  ++|   +..|..+|+.+|+.|+..
T Consensus       319 ~~~~~P~l~~~~~~~----~w~-G~~~~t~D~~---PiIg~~~~~gl~~a~G~~--g~G---~~~ap~~G~~la~li~~~  385 (407)
T TIGR01373       319 ILEMFPILSRVRMLR----SWG-GIVDVTPDGS---PIIGKTPLPNLYLNCGWG--TGG---FKATPASGTVFAHTLARG  385 (407)
T ss_pred             HHHhCCCcCCCCeEE----Eec-cccccCCCCC---ceeCCCCCCCeEEEeccC--Ccc---hhhchHHHHHHHHHHhCC
Confidence            999999987544332    242 2222344432   322 12358999988665  333   344778899999988754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.05  E-value=0.00025  Score=69.64  Aligned_cols=56  Identities=16%  Similarity=0.032  Sum_probs=45.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l  145 (368)
                      ..++..|++.+++.|++|+.+++|++|.. +  +. +.|+++++++.||.||+|+..+.-
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~-~~v~t~~g~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEE-G--QP-AVVRTPDGQVTADKVVLALNAWMA  238 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEee-C--Cc-eEEEeCCcEEECCEEEEccccccc
Confidence            35789999999999999999999999974 3  32 357777668999999999988643

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.02  E-value=0.00041  Score=66.37  Aligned_cols=56  Identities=16%  Similarity=0.101  Sum_probs=46.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l  145 (368)
                      ..++..|.+.+++ |++|+.+++|++|..++  ++ +.|+++ |+.++||.||+|++++..
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence            4688889888888 99999999999999876  54 456666 556899999999998754

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.98  E-value=0.0025  Score=60.82  Aligned_cols=55  Identities=24%  Similarity=0.348  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      .+...|.+.++++|++++.+++|++|..++  +++. |+++++++.+|.||+|++.+.
T Consensus       146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~-v~~~~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       146 KALRALQELAEAHGATVRDGTKVVEIEPTE--LLVT-VKTTKGSYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEE-EEeCCCEEEeCEEEEecCcch
Confidence            577888888888999999999999998765  5553 666666899999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.87  E-value=0.0023  Score=61.85  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C----eEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K----ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g----~~~~ad~VV~a~p~~~l  145 (368)
                      ..++..|.+.+++.|++|+.+++|++|..++  +.++....+ +    .+++||+||+|++++..
T Consensus       197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence            4577888899999999999999999998766  545422222 2    26899999999999864

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.72  E-value=0.0052  Score=58.47  Aligned_cols=56  Identities=23%  Similarity=0.247  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  145 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l  145 (368)
                      .++..+.+.+.+.|++|+++++|++|..++  +.+ .|.++++++.||.||+|++++..
T Consensus       150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        150 LAIKAHLRLAREAGAELLFNEPVTAIEADG--DGV-TVTTADGTYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeE-EEEeCCCEEEeeEEEEecCcchh
Confidence            466677777788899999999999999866  544 46676568999999999998754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.59  E-value=0.0089  Score=54.53  Aligned_cols=55  Identities=22%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+++.|++++++++|++|..++  ++++ +...  ++++++|.||.|.+...
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~-~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVV-VIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEE-EEEcCccEEEEeCEEEECCCcch
Confidence            477788888888999999999999998876  4443 3332  46899999999999853

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.51  E-value=0.0074  Score=55.16  Aligned_cols=63  Identities=22%  Similarity=0.307  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhhHHHhhhh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      -.+++...++++|+.++-+..|+.|...++.+....|++ +|..+.|+.+|+|+++++.+ +++.
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~  218 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT  218 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence            446677778999999999999999986543243344554 47789999999999999877 6664

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.41  E-value=0.0078  Score=58.56  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +-..|.+.+++.|++|+++++|++|..++  +++.++..+|++++||.||.|.+...
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            44567777888999999999999998776  66666766678899999999998754

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.38  E-value=0.025  Score=53.94  Aligned_cols=206  Identities=15%  Similarity=0.078  Sum_probs=105.7

Q ss_pred             hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhcc-ccCchhHHhhh
Q 017658           87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSI-LCNREEFLKVL  164 (368)
Q Consensus        87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~-l~~~~~~~~i~  164 (368)
                      .++..+++.++++| ..+..+++|+.+..++   +++.|.+.+++++||+||+|+.++.-. +..... +          
T Consensus       157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~-l~~~~~~~----------  222 (387)
T COG0665         157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE-LAATLGEL----------  222 (387)
T ss_pred             HHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH-HHHhcCCC----------
Confidence            57889999999999 5677799999998751   256788886669999999999987544 222110 0          


Q ss_pred             ccCccceEEEEEEecCCCCCCCCCc--eeecCCCCccceeeeccccccccCCCCCeE-EEEEeecCCCC-CCCCHHH-HH
Q 017658          165 NLASIDVVSVKLWFDKKVTVPNVSN--ACSGFGDSLAWTFFDLNKIYDEHKDDSATV-IQADFYHANEL-MPLKDDQ-VV  239 (368)
Q Consensus       165 ~l~~~~~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v-~~~~~~~~~~~-~~~~~~e-~~  239 (368)
                      .+.-.+.....+.++..........  ..... ..... ++     .+.   .++.+ +.........+ .+...++ ..
T Consensus       223 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-y~-----~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~~~  292 (387)
T COG0665         223 PLPLRPVRGQALTTEPPEGLLADGLAPVVLVV-DDGGG-YI-----RPR---GDGRLRVGGTDEEGGDDPSDPEREDLVI  292 (387)
T ss_pred             cCccccccceEEEecCCCccccccccceEEEe-cCCce-EE-----EEc---CCCcEEEeecccccCCCCccccCcchhH
Confidence            0011111111122211110000000  00000 00000 11     010   12333 22211111011 1111222 46


Q ss_pred             HHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHH
Q 017658          240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN  319 (368)
Q Consensus       240 ~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~  319 (368)
                      ..++..+.+++|.+....+..    .|....+..+|+..+.. ....+.+|+|++..+.+  +|   +.-+..+|+.+|+
T Consensus       293 ~~l~~~~~~~~P~l~~~~~~~----~w~g~~~~t~pd~~P~i-G~~~~~~~l~~a~G~~~--~G---~~~~p~~g~~lA~  362 (387)
T COG0665         293 AELLRVARALLPGLADAGIEA----AWAGLRPPTTPDGLPVI-GRAAPLPNLYVATGHGG--HG---FTLAPALGRLLAD  362 (387)
T ss_pred             HHHHHHHHHhCccccccccce----eeeccccCCCCCCCcee-CCCCCCCCEEEEecCCC--cC---hhhccHHHHHHHH
Confidence            788999999999987544433    24333322224433211 10123789999987763  33   3347788999999


Q ss_pred             HHHHHhC
Q 017658          320 RVVDYLG  326 (368)
Q Consensus       320 ~Il~~~~  326 (368)
                      .|+....
T Consensus       363 li~g~~~  369 (387)
T COG0665         363 LILGGEP  369 (387)
T ss_pred             HHcCCCC
Confidence            9988644

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.34  E-value=0.009  Score=61.52  Aligned_cols=64  Identities=16%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             eeecCCc--chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChhhH
Q 017658           78 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        78 ~~~~GG~--~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~~l  145 (368)
                      .++.+|+  ...++++|.+.+++ |++|+.+++|++|..++  ++++ |.+++ ..+.||.||+|++.+..
T Consensus       398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence            3445542  23688888888888 99999999999998876  5554 66664 45789999999998753

>PRK10015 oxidoreductase; Provisional

Probab=97.30  E-value=0.054  Score=52.73  Aligned_cols=55  Identities=24%  Similarity=0.430  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +-..|.+.+++.|++|+.+++|++|..++  +++.++..++++++||.||.|.+...
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s  164 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS  164 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence            44457777888899999999999998766  66777777677899999999988753

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.27  E-value=0.095  Score=52.70  Aligned_cols=57  Identities=23%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~~  144 (368)
                      ..|+.++++.++++|++|+++++|++|..++  ++|++|++    ++  .++.||.||.|++++.
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            4577888888899999999999999999876  67887775    23  3789999999999985

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.23  E-value=0.051  Score=55.47  Aligned_cols=58  Identities=21%  Similarity=0.125  Sum_probs=48.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecC-CCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..|+.++++.++++|++|+.+++|++|..++ + |++++|++    +++  ++.||.||.|++++.
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            4688899999999999999999999998763 2 66777665    344  589999999999985

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.22  E-value=0.017  Score=57.72  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~~l  145 (368)
                      ..++.++++.++++|++|+++++|++|..++  +++++|++    +|  .++.|+.||.|++++.-
T Consensus       128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~  191 (516)
T TIGR03377       128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG  191 (516)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence            4688889899999999999999999999876  66777765    24  27899999999999854

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.16  E-value=0.069  Score=51.38  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  145 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l  145 (368)
                      +-+-|++..++.|++++.+++|+.+..+++ +.+.++..++.+++|+.||.|-++...
T Consensus        97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcchH
Confidence            556688888899999999999999998875 544444444568999999999987643

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.15  E-value=0.0015  Score=62.72  Aligned_cols=66  Identities=21%  Similarity=0.272  Sum_probs=47.5

Q ss_pred             ceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        76 ~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ...||.-.-...+++.|.+.++++|++|+++++|++|..++  +++..|.+ +++.+.||.||+|++-.
T Consensus        99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~  165 (409)
T PF03486_consen   99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGK  165 (409)
T ss_dssp             TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----S
T ss_pred             CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCC
Confidence            34577643467899999999999999999999999999887  55677888 68899999999998753

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.04  E-value=0.0023  Score=61.33  Aligned_cols=64  Identities=19%  Similarity=0.193  Sum_probs=53.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C--eEEecCEEEEeeChhhHHHhhhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      .+|.++|.+.++++|++|+.+++|+++..++  +++++|.++ +  ..++||.||+|++.+....|+..
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE  329 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence            4699999999999999999999999999887  678877755 3  38999999999999855555443

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0036  Score=58.33  Aligned_cols=129  Identities=17%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             CchhhhhccCc--cHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcc
Q 017658           10 TDVAWRKYDSI--TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLR   85 (368)
Q Consensus        10 ~~~~~~~ld~~--S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~   85 (368)
                      +...|..++..  |+.+++.+.++.++.++ +.--.........--+.++...+..+..|+  +..-+.+...||.+|++
T Consensus       154 ~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlg  232 (440)
T KOG1439|consen  154 DPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYGLG  232 (440)
T ss_pred             ccccccccccccchHHHHHHHhccccccee-eeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceecccCcc
Confidence            34456666554  99999999988887664 221111111111122344545555444443  12222333568899988


Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeC
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG  141 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p  141 (368)
                      + |++..++.-.=-||+..+|.++.+|..+.+ |++.+|..+++...+..|||.-.
T Consensus       233 E-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~~k~vi~dpS  286 (440)
T KOG1439|consen  233 E-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAKCKKVICDPS  286 (440)
T ss_pred             h-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceeecceEEecCc
Confidence            6 999999876666999999999999998655 88888888888888888877543

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.76  E-value=0.0054  Score=56.76  Aligned_cols=107  Identities=19%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             ccccCCchhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC---Ccceeeec
Q 017658            5 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCR   81 (368)
Q Consensus         5 ~~~~~~~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~   81 (368)
                      +.|.....  ++||+.|+.||+....+..    .||-  .+...++-....|+.++...+.+++....+   ...+.+.+
T Consensus       151 ~kL~~t~E--E~L~~~tI~d~Fse~FF~s----NFW~--yW~tmFAFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftk  222 (587)
T COG4716         151 IKLLMTPE--EKLDDLTIEDWFSEDFFKS----NFWY--YWQTMFAFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTK  222 (587)
T ss_pred             HHHHcCcH--HhcCCccHHHhhhHhhhhh----hHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccc
Confidence            34444443  7899999999998644433    3442  233444545667777777766655432211   22223334


Q ss_pred             CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCc
Q 017658           82 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC  119 (368)
Q Consensus        82 GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g  119 (368)
                      -..+++|+.+|..+|++||+++..++.|+.|.++...|
T Consensus       223 yNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~g  260 (587)
T COG4716         223 YNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPG  260 (587)
T ss_pred             cchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcc
Confidence            45578999999999999999999999999999875324

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.70  E-value=0.0048  Score=58.61  Aligned_cols=56  Identities=25%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .++.-|.+.|+++|++|+++|+|.+|.+.+  +.+.+|.+. |+++.+|+||+|.+=..
T Consensus       174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         174 KVVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch
Confidence            467788888999999999999999999987  556777776 77999999999987643

>PLN02697 lycopene epsilon cyclase

Probab=96.67  E-value=0.64  Score=46.42  Aligned_cols=55  Identities=13%  Similarity=0.190  Sum_probs=42.8

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+.+.|+++ ++++|++|..++  +.+..+.+ +|+++.|+.||.|.++..
T Consensus       193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        193 LLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            46677888888889998 788999998766  33443444 477899999999999976

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.66  E-value=0.055  Score=53.34  Aligned_cols=57  Identities=23%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhHH
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l~  146 (368)
                      +|+-..+.....+|++|++.++|+++..++  | |++|++.    |+  .+.|+.||.|++++.-.
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~  227 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE  227 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence            577777788888999999999999999987  7 8999875    33  58999999999998754

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.65  E-value=0.43  Score=47.50  Aligned_cols=57  Identities=19%  Similarity=0.058  Sum_probs=44.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C--eEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VV~a~p~~~l  145 (368)
                      ..|+..++...+++|++|+.+++|++|..++  +. +.|.+.   |  .++.|+.||.|++++.-
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~  216 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREG--GL-WRVETRDADGETRTVRARALVNAAGPWVT  216 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence            4577778888889999999999999998865  53 445543   2  25899999999999753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.65  E-value=0.48  Score=47.20  Aligned_cols=57  Identities=23%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l  145 (368)
                      ..|+..+++.+.++|++|+++++|++|..++  +. ++|.+.    |+  ++.|+.||.|++++.-
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~  217 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GL-WHVTLEDTATGKRYTVRARALVNAAGPWVK  217 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence            4577888888889999999999999998765  53 345432    43  6899999999999753

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=96.59  E-value=0.008  Score=56.35  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             ceeeec-CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           76 DLVWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        76 ~~~~~~-GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      ...||+ .. .+.++++|.+.+++.|++|+++++|.+|..++  ... .+.+. |+++.||.+|+|++-
T Consensus       101 Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f-~l~t~~g~~i~~d~lilAtGG  165 (408)
T COG2081         101 GRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGF-RLDTSSGETVKCDSLILATGG  165 (408)
T ss_pred             ceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceE-EEEcCCCCEEEccEEEEecCC
Confidence            334676 55 56899999999999999999999999999876  333 46666 558999999999883

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.49  E-value=0.011  Score=57.58  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChh
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS  143 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~  143 (368)
                      ++.++ +..+++.|.+.++++|++|+++++|++|..++++++|.+|...  +.++.++.||+|++-.
T Consensus       117 ~~~~~-g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~  182 (432)
T TIGR02485       117 FLRGG-GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL  182 (432)
T ss_pred             eecCC-HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence            33344 3579999999999999999999999999876311778777764  3478999999999853

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK06847 hypothetical protein; Provisional

Probab=96.47  E-value=0.48  Score=45.00  Aligned_cols=55  Identities=24%  Similarity=0.199  Sum_probs=44.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+++.|++|+++++|++|..++  +++. |.+ +|+++++|.||.|.+...
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGVT-VTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEE-EEEcCCCEEEcCEEEECcCCCc
Confidence            477888888888899999999999998766  4444 554 477899999999999854

>PRK06185 hypothetical protein; Provisional

Probab=96.46  E-value=0.25  Score=47.58  Aligned_cols=61  Identities=18%  Similarity=0.164  Sum_probs=45.6

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC---Ce-EEecCEEEEeeChhh-HHHhh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~-~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      .+.+.|.+.+.+. |++++.+++|+++..++  +++++|.+.   |+ +++||.||.|-+... +.+.+
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~  175 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA  175 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence            4677777777664 89999999999998876  566655542   43 789999999998864 34443

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=96.45  E-value=0.88  Score=43.44  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..|.+.|.+.+.+.|++++ +++|+.+..+++ + .+.|+++ |++++|+.||.|.+...
T Consensus        85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~-~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-A-LSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-c-eeEEEeCCCCEEEeCEEEECCCCch
Confidence            4577888888888899886 668988887642 3 3456665 55899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=96.37  E-value=0.011  Score=58.40  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             hhhhHHHHHHHHH----cC--CEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHH
Q 017658           86 EKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        86 ~~L~~~l~~~l~~----~G--~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~  146 (368)
                      ..|+..+.+.+++    +|  ++|+++++|++|..++  +.++.|.++.+++.||.||+|++.+...
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~~  275 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSLL  275 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHHH
Confidence            3688999999988    78  6799999999999875  3356687776689999999999998654

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.37  E-value=0.21  Score=47.51  Aligned_cols=55  Identities=13%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+++.| ++|+.+++|++|..++  ++++ |+.. |+++++|.||.|-+...
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEECCCCEEEeeEEEEeCCCCC
Confidence            48888888888888 9999999999998776  5554 5554 66899999999888753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.36  E-value=0.31  Score=46.71  Aligned_cols=55  Identities=13%  Similarity=0.154  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+++.|++|+.+++|++|..++  ++++ |+++ |+++++|.||.|.+...
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR-LRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEECCCCEEEeCEEEEecCCCc
Confidence            578888888988999999999999998776  4454 6654 67899999999998864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=96.35  E-value=0.28  Score=46.76  Aligned_cols=55  Identities=11%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+.+ .|++++.+++|++|..++  +.++ |.+. |+++.||.||.|.+...
T Consensus       106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVR-VTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEeeEEEEecCCCh
Confidence            588888888887 499999999999998766  4454 5554 66899999999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=96.35  E-value=0.14  Score=51.13  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..++.+|+...++.|+.|..+++|++|....  +++++|.+.-+.+++.+||-|++.+.
T Consensus       187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~~gVeT~~G~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  187 AGLCQALARAASALGALVIENCPVTGLHVET--DKFGGVETPHGSIETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHHHhcCcEEEecCCcceEEeec--CCccceeccCcceecceEEechhHHH
Confidence            4699999999999999999999999999877  45678988877899999999999987

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.27  E-value=0.054  Score=51.46  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             ceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChhh
Q 017658           76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST  144 (368)
Q Consensus        76 ~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~~  144 (368)
                      ...||.-.-+..++++|.+.+++.|++|+++++|++|  ++  ++ ..+.+.  ++.++||+||+|++-..
T Consensus        76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence            3457754446789999999999999999999999999  33  33 356654  35799999999998754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.24  E-value=0.014  Score=56.02  Aligned_cols=58  Identities=16%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeE-EecCEEEEeeChhhHH
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGISTLQ  146 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~-~~ad~VV~a~p~~~l~  146 (368)
                      .++.+|++.+.++|++|++|++|+.|...++ | ++.+.+. |++ ++|+.||.+++.....
T Consensus       154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYADP  213 (429)
T ss_pred             HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence            5889999999999999999999999999875 5 5555555 555 9999999999987654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=96.13  E-value=0.0043  Score=58.97  Aligned_cols=116  Identities=14%  Similarity=0.059  Sum_probs=78.7

Q ss_pred             ccHHHHH---HHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC---CcceeeecCCcchhhhHHHH
Q 017658           20 ITARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEPWM   93 (368)
Q Consensus        20 ~S~~d~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~GG~~~~L~~~l~   93 (368)
                      .++.+|.   .+ .+++.+++.|+.|+..-.|+.+|+++++.++..+ -..+.....   ..-..+|++| ..+|++.|.
T Consensus       129 ~~~~e~~d~~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~Rv-P~~~~~d~~yf~d~~q~~P~~G-yt~~~~~ml  205 (377)
T TIGR00031       129 EELQEIADPDIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRV-PVVLSEDSSYFPDRYQGLPKGG-YTKLFEKML  205 (377)
T ss_pred             CCHHHHHHHHHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEec-ceEecCCCCccccccccccccc-HHHHHHHHH
Confidence            4456665   54 6899999999999999999999999999876521 111101100   1123578999 567888775


Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHH
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE  147 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~  147 (368)
                         ++.+.+|++|+.+..|...+  +++   ...++.+. +.||.|.|++.+..
T Consensus       206 ---~~~~i~v~l~~~~~~~~~~~--~~~---~~~~~~~~-~~vi~Tg~id~~f~  250 (377)
T TIGR00031       206 ---DHPLIDVKLNCHINLLKDKD--SQL---HFANKAIR-KPVIYTGLIDQLFG  250 (377)
T ss_pred             ---hcCCCEEEeCCccceeeccc--cce---eecccccc-CcEEEecCchHHHh
Confidence               45578999999888887544  433   23333333 88999999987764

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.12  E-value=0.02  Score=56.27  Aligned_cols=57  Identities=26%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C--eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VV~a~p~~  143 (368)
                      +..++..|.+.+++.|++|+++++|++|..++  ++|++|.+.   +  ..+.++.||+|++..
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~  191 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGF  191 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence            35699999999999999999999999999865  788888763   2  368999999999853

>PRK07045 putative monooxygenase; Reviewed

Probab=96.04  E-value=1.2  Score=42.51  Aligned_cols=60  Identities=10%  Similarity=0.135  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHH
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQE  147 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~  147 (368)
                      .|.+.|.+.+.. .|++|+++++|++|..+++ +.++.|+++ |+++++|.||.|-+... +.+
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~  169 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRD  169 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence            466677777654 5799999999999998764 544557765 67899999999988865 344

>PLN02463 lycopene beta cyclase

Probab=95.98  E-value=1.8  Score=42.41  Aligned_cols=54  Identities=24%  Similarity=0.318  Sum_probs=42.0

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|-+.|.+.+.+.|++++ .++|++|..++  +++ .|+++ |++++||.||.|.+...
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~-~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKS-LVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence            466777777888899996 57999998776  444 46666 56899999999998753

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=95.87  E-value=0.024  Score=54.79  Aligned_cols=59  Identities=27%  Similarity=0.309  Sum_probs=47.2

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhH
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL  145 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l  145 (368)
                      ...++..|.+.++++|++|+++++|++|..++  ++|++|...    |+  ++.|+.||+|+.-..-
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            35699999999999999999999999999986  889998764    44  5789999999887653

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.86  E-value=0.62  Score=44.63  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE--CCeEEecCEEEEeeChhh-HHHhhh
Q 017658           86 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST-LQELIK  150 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~~~~ad~VV~a~p~~~-l~~ll~  150 (368)
                      ..|.+.|.+.+.+.+ ++++++++|+.+..++  +.|+ +++  +|++++||.||-|=+... +.+.+.
T Consensus       104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~  169 (387)
T COG0654         104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG  169 (387)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence            358889999998876 8999999999999987  4566 544  467899999999888754 344444

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.063  Score=50.39  Aligned_cols=124  Identities=12%  Similarity=0.061  Sum_probs=84.4

Q ss_pred             chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhh
Q 017658           11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKI   88 (368)
Q Consensus        11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L   88 (368)
                      +..+.+..+.++.|||+..++++++..-++.    ++-....++.++..-+.....|+  +++-+..-+.||--|.++ |
T Consensus       214 ~~~~~~~~e~~F~EyL~~~rltp~lqs~vl~----aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-L  288 (547)
T KOG4405|consen  214 PDEYVEFRERPFSEYLKTMRLTPKLQSIVLH----AIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-L  288 (547)
T ss_pred             cHHHHHhhcCcHHHHHHhcCCChhhHHHHHH----HHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-c
Confidence            4456778889999999999999987643332    23333456666666555544443  233233445677777666 9


Q ss_pred             hHHHHHHHHHcCCEEeccceeeeEEecCCCceEEE-EEECCeEEecCEEEEe
Q 017658           89 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCGKETYSAGAVVLA  139 (368)
Q Consensus        89 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~-v~~~g~~~~ad~VV~a  139 (368)
                      .+...+...=.|+=.-++.+|+.|..+.++.+++. +...|+++.+.++|+.
T Consensus       289 pQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s  340 (547)
T KOG4405|consen  289 PQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVS  340 (547)
T ss_pred             hHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeec
Confidence            99999988778999999999999999874232221 2223778888887765

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.80  E-value=0.29  Score=44.13  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             hhhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-----CeEEecCEEEEeeChhhHHHhhhh
Q 017658           86 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-----g~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      +.+...|.+.+++.| +++.++ .|.++..+.  +|+.++...     ....+.+++|++++||+-+ |++.
T Consensus       147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~  214 (380)
T KOG2852|consen  147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPF  214 (380)
T ss_pred             HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh-hccc
Confidence            358888888888776 889888 677787443  666665543     2356888999999998766 5443

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.79  E-value=0.03  Score=53.80  Aligned_cols=56  Identities=20%  Similarity=0.255  Sum_probs=47.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.++|.+.+++.|++|+++++|++|..++  +++ .|.++++++.||.||+|++.+.
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence            4688999999999999999999999998766  544 5666666899999999999874

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.70  E-value=0.024  Score=48.77  Aligned_cols=54  Identities=24%  Similarity=0.164  Sum_probs=41.0

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.++++|.+|+++++|++|..++  ++ |.|++.. ++++||+||+|++..
T Consensus        83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   83 EVLDYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             HHHHHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEETTS-EEEEEEEEE---SS
T ss_pred             HHHHHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEEecceeeeeeEEEeeecc
Confidence            477888888999999999999999999987  44 6688874 589999999999963

...

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.67  E-value=0.036  Score=55.83  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=47.9

Q ss_pred             cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017658           81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST  144 (368)
Q Consensus        81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~  144 (368)
                      .+|  ..|+.+|.+.+++.|++|+++++|++|..++  |+|++|...  |+  .+.+ +.||+|++-..
T Consensus       214 ~~G--~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~  278 (564)
T PRK12845        214 AGG--QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFD  278 (564)
T ss_pred             CCh--HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence            455  5799999999999999999999999998654  889998653  43  3566 57999887654

>PRK07121 hypothetical protein; Validated

Probab=95.59  E-value=0.038  Score=54.78  Aligned_cols=59  Identities=24%  Similarity=0.288  Sum_probs=48.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~  144 (368)
                      +..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|...  ++  ++.| +.||+|++...
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~  239 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA  239 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence            356999999999999999999999999988754 688888764  33  5788 99999998754

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=95.52  E-value=0.039  Score=55.88  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~  144 (368)
                      ..|+..|.+.++++|++|+++++|++|..++  |+|++|...  ++  ++.| +.||+|++...
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            4689999999999999999999999998875  788887653  33  5788 99999998865

>TIGR00275 flavoprotein, HI0933 family

Probab=95.47  E-value=0.06  Score=51.89  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=50.3

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ||.......+.+.+.+.+++.|++|+++++|++|..++  +. +.|.++++++.+|.||+|++...
T Consensus        98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~-~~v~~~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275        98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NG-FGVETSGGEYEADKVILATGGLS  160 (400)
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--Ce-EEEEECCcEEEcCEEEECCCCcc
Confidence            44433346799999999999999999999999997655  43 45677777899999999999743

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.39  E-value=0.062  Score=54.25  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=48.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..|+..|.+.+++.|++|+.+++|++|..++  |+|.|+..    +|+  .+.|+.||+|++-..
T Consensus       118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~  181 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG  181 (565)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence            45799999999998999999999999999865  88988875    243  579999999988753

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.33  E-value=0.049  Score=55.17  Aligned_cols=58  Identities=17%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~  144 (368)
                      ..++..|.+.+++.|++|+++++|++|..+++ |+|++|...  ++  .+.|+ .||+|++-..
T Consensus       213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~  275 (584)
T PRK12835        213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD  275 (584)
T ss_pred             HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence            46888898899999999999999999998754 889998764  43  47887 5988887754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.29  E-value=0.92  Score=42.22  Aligned_cols=62  Identities=24%  Similarity=0.261  Sum_probs=44.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh-HHHhhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST-LQELIK  150 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~-l~~ll~  150 (368)
                      .|-+.|.+.+++.|++|+.+++|+.+..+.  ++++.+...   |+  +++||.||-|-+... +.+.+.
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~  179 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG  179 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred             HHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence            477788888888999999999999998877  445433332   32  689999999988865 344443

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=95.23  E-value=0.11  Score=49.87  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhhHHHhhhh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      .|++.|.+.+++. |++++++++|++|...+| |+ |.|.+.    |  .++.|+.|++.++...+. |+..
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~-LLqk  250 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALP-LLQK  250 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECCEEEECCchHhHH-HHHH
Confidence            5999999999887 999999999999999876 64 445541    3  479999999999998877 5444

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.19  E-value=0.064  Score=54.06  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~  144 (368)
                      ..|+..|.+.+++.|++|+++++|++|..++  |+|++|.+.  |+  ++.|+ .||+|++-..
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~  269 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFG  269 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence            5699999999999999999999999999876  889998763  44  47885 6888887654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=95.17  E-value=0.059  Score=52.57  Aligned_cols=58  Identities=28%  Similarity=0.312  Sum_probs=47.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+++.|.+.+++.|++|+++++|++|..+++ |+|++|.+.   ++  .+.++.||+|++...
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~  192 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFG  192 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence            35889999999999999999999999998654 678877653   33  368999999998754

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=95.15  E-value=0.072  Score=52.65  Aligned_cols=58  Identities=14%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-C--eEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-K--ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g--~~~~ad~VV~a~p~~~l  145 (368)
                      ..++.+|.+.+++.|++|+++++|++|..+++ +.+. +.+   + |  .+++||+||+|++.+..
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~  241 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL  241 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEE-EEEeeccCCceEEEECCEEEECCCcchH
Confidence            46899999999999999999999999987653 4333 332   2 3  26899999999998764

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.15  E-value=0.066  Score=54.20  Aligned_cols=57  Identities=25%  Similarity=0.271  Sum_probs=47.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~  144 (368)
                      ..|+..|.+.++++|++|+++++|++|..++  ++|++|...  ++  ++.+ +.||+|++...
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~  282 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFN  282 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence            4699999999999999999999999998765  788888764  33  4676 68999988754

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=95.11  E-value=1.1  Score=42.78  Aligned_cols=55  Identities=18%  Similarity=-0.016  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+.+.|+..+.+++|++|..++  +.++ |+++ |++++||.||.|-+...
T Consensus       112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        112 LLNRALEARVAELPNITRFGDEAESVRPRE--DEVT-VTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEE-EEECCCCEEEEeEEEEecCCCc
Confidence            577888888887766569999999998776  4454 5555 66899999999988854

>PRK07588 hypothetical protein; Provisional

Probab=95.07  E-value=2.1  Score=40.95  Aligned_cols=54  Identities=9%  Similarity=0.033  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+. .|++|+++++|++|..++  +.|+ |++. |+++++|.||.|-+...
T Consensus       104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588        104 DLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVR-VTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             HHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEE-EEECCCCEEEeCEEEECCCCCc
Confidence            35566666554 378999999999998776  4454 5554 77889999999988754

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=95.00  E-value=0.097  Score=47.15  Aligned_cols=58  Identities=26%  Similarity=0.260  Sum_probs=46.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VV~a~p~~~  144 (368)
                      ..+...|.+.+.+.|++|++++.|++|..+++ ++|.++.++       +     .++.|+.||.|++.+.
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            45888899999999999999999999987663 477777653       1     3689999999998653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=94.87  E-value=0.1  Score=50.44  Aligned_cols=55  Identities=16%  Similarity=0.189  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C--eEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VV~a~p~~  143 (368)
                      .+.+.|.+.+++.|++|+++++|+++..++  +++..+... +  ..+++|.||+|++..
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            589999999999999999999999998876  667665443 3  258999999998863

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.86  E-value=0.11  Score=52.60  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=48.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~~  144 (368)
                      +..|..+|.+.+++.|++|+.+++++++..+++ |+|.||.. +   |+  .+.|+.||+|++-..
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            356999999998889999999999999998644 88999875 2   43  578999999988754

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.83  E-value=0.11  Score=52.78  Aligned_cols=59  Identities=24%  Similarity=0.244  Sum_probs=48.5

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..+...|.+.+++.|++|+++++|++|..+++ |+|.||..    +|+  .+.|+.||+|++-..
T Consensus       148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            356999999999889999999999999988654 78888875    243  678999999988754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.81  E-value=2.5  Score=40.35  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           88 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        88 L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      |-+.|.+.+.+ .|++|+.+++|++|..++  +++. |++. |+++.+|.||.|.+...
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVR-VTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCh
Confidence            55666666665 479999999999998765  4454 6654 66899999999999864

>PRK06175 L-aspartate oxidase; Provisional

Probab=94.72  E-value=0.12  Score=50.43  Aligned_cols=56  Identities=13%  Similarity=0.288  Sum_probs=45.0

Q ss_pred             chhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEE--CCe--EEecCEEEEeeCh
Q 017658           85 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGI  142 (368)
Q Consensus        85 ~~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~a~p~  142 (368)
                      +..+++.|.+.+++ .|++|+++++|++|..++  ++|.+|..  +++  ++.|+.||+|++.
T Consensus       127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG  187 (433)
T PRK06175        127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGG  187 (433)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence            35688999888875 499999999999998765  77888653  344  5899999999887

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=94.70  E-value=0.1  Score=51.96  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--C-e--EEecCEEEEeeCh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGI  142 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g-~--~~~ad~VV~a~p~  142 (368)
                      ..+++.|.+.++++|++|+++++|++|..++  |+|++|.+.  + +  ++.|+.||+|++-
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG  249 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGG  249 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence            3588999999999999999999999998765  788887663  2 2  5899999999974

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=94.67  E-value=4.2  Score=38.76  Aligned_cols=55  Identities=25%  Similarity=0.155  Sum_probs=42.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..|-+.+.+.+. .++.+++++.|++|..++  +.+ .|+++ |++++|+.||-+.++..
T Consensus        87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~-~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG--DGV-LVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceE-EEEECCCCEEEeeEEEECCCccc
Confidence            356777777777 567899999999999877  423 35555 67999999999988643

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=94.66  E-value=0.12  Score=51.31  Aligned_cols=58  Identities=21%  Similarity=0.278  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE---C-Ce--EEecCEEEEeeChhhHH
Q 017658           87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VV~a~p~~~l~  146 (368)
                      .+.++|.+.++++| ++|+++++|++|..+++ +++. |.+   + |+  +++|++||++++.+...
T Consensus       184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~~  248 (494)
T PRK05257        184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGALP  248 (494)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEE-EEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence            58999999999887 69999999999998654 5333 332   2 43  68999999999997643

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.66  E-value=0.11  Score=52.35  Aligned_cols=58  Identities=19%  Similarity=0.193  Sum_probs=46.0

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~  144 (368)
                      +..+...|.+.+++.|++|+++++|++|..++  ++|++|.+.  ++  .+.|+ .||+|++-..
T Consensus       207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~  269 (557)
T PRK07843        207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFE  269 (557)
T ss_pred             cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence            35688999999999999999999999999865  788887763  43  47886 5888766543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.56  E-value=0.14  Score=51.97  Aligned_cols=59  Identities=14%  Similarity=0.186  Sum_probs=48.5

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..|+..|.+.+.+.|++|++++.|+++..+++ |+|.||..    +|+  .+.|+.||+|++-..
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            457999999988888999999999999998644 88999875    243  578999999988754

>PRK08244 hypothetical protein; Provisional

Probab=94.51  E-value=5  Score=39.78  Aligned_cols=59  Identities=22%  Similarity=0.218  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CC-eEEecCEEEEeeChhh-HHHhh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      +-+.|.+.+++.|++|+.+++|++|..++  ++++ |++   +| ++++||+||.|-+... +.+.+
T Consensus       102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l  165 (493)
T PRK08244        102 TEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQA  165 (493)
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence            55666677778899999999999998776  4454 333   24 4799999999988754 34443

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=94.39  E-value=3.1  Score=39.97  Aligned_cols=59  Identities=17%  Similarity=0.176  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHHhh
Q 017658           88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      |.+.|.+.+.+. |++|+++++|++|..++  +.++ |.+. |++++||.||.|-+... +.+.+
T Consensus       113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~  174 (405)
T PRK08850        113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAW-LTLDNGQALTAKLVVGADGANSWLRRQM  174 (405)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEE-EEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence            556777777664 79999999999998766  4443 5554 77899999999999753 44443

>PRK08401 L-aspartate oxidase; Provisional

Probab=94.23  E-value=0.16  Score=50.04  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=47.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++++.+ .|+.|..++  |+|.+|..+++.+.++.||+|++...
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFS  175 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCc
Confidence            469999999999999999876 899987655  77888888888899999999998864

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=94.22  E-value=0.2  Score=50.72  Aligned_cols=58  Identities=26%  Similarity=0.313  Sum_probs=47.7

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..+...|.+.+++.|++|+.++.|++|..++  |+|.+|..    +|+  .+.|+.||+|++...
T Consensus       128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            34688899998888899999999999998875  88888764    243  579999999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=94.21  E-value=0.14  Score=51.80  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=46.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~  144 (368)
                      ..|++.|.+.++++|++|+++++|++|..++  ++|++|.+.  ++  .+.++ .||+|++...
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            4689999999999999999999999999876  788888763  33  47786 6888888754

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.05  E-value=0.12  Score=49.46  Aligned_cols=55  Identities=25%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce-EEecCEEEEeeChhh
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIST  144 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~-~~~ad~VV~a~p~~~  144 (368)
                      .+.+.+.+...+.|+++|++|+++++|++|..+   + |   +++ |+ ++.++.||.|++...
T Consensus       206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~---~-v---~~~~g~~~I~~~tvvWaaGv~a  262 (405)
T COG1252         206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD---G-V---TLKDGEEEIPADTVVWAAGVRA  262 (405)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC---c-E---EEccCCeeEecCEEEEcCCCcC
Confidence            345778898999999999999999999999643   2 3   343 55 599999999998853

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.02  E-value=0.16  Score=46.56  Aligned_cols=63  Identities=22%  Similarity=0.236  Sum_probs=45.8

Q ss_pred             HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce----EEecCEEEEeeChhhHHHhhhhc
Q 017658           90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE----TYSAGAVVLAVGISTLQELIKNS  152 (368)
Q Consensus        90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~----~~~ad~VV~a~p~~~l~~ll~~~  152 (368)
                      .-|...+++.+.+|++++.|++|..+++++++++|.+.   ++    .+.++.||+++++-...+||-..
T Consensus       197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~S  266 (296)
T PF00732_consen  197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRS  266 (296)
T ss_dssp             HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred             cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccc
Confidence            33444454458999999999999886333788888864   32    46789999999998887776554

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12839 hypothetical protein; Provisional

Probab=94.01  E-value=0.17  Score=51.16  Aligned_cols=58  Identities=19%  Similarity=0.173  Sum_probs=46.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce-EE-ecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TY-SAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~-~~-~ad~VV~a~p~~~  144 (368)
                      ..|+..|.+.+++.|++|+++++|++|..+++ |+|++|...   ++ ++ .++.||+|++...
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~  276 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFP  276 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence            46899999999999999999999999987644 789998753   33 34 4589999987754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=94.00  E-value=0.22  Score=50.62  Aligned_cols=58  Identities=24%  Similarity=0.271  Sum_probs=44.5

Q ss_pred             chhhhHHHHHHHHHc----CCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~----G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~  143 (368)
                      +..+...|.+.+++.    |++|+++++|++|..+++ |+|+||.+.    |+  .+.|+.||+|++-.
T Consensus       128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            346777777766543    899999999999988653 688888752    33  57899999999763

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.98  E-value=0.24  Score=50.22  Aligned_cols=58  Identities=22%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..+.+.|.+.+++.|++|++++.|++|..++  |+|.|+..    +|+  .+.|+.||+|++...
T Consensus       134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            35699999999998999999999999998765  77887753    243  589999999998853

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=93.93  E-value=7.7  Score=38.94  Aligned_cols=59  Identities=19%  Similarity=0.139  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE---CC--eEEecCEEEEeeChhhH-HHhh
Q 017658           88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTL-QELI  149 (368)
Q Consensus        88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~a~p~~~l-~~ll  149 (368)
                      +-+.|.+.+.+. |++|+.+++|++|..++  ++|+ |++   +|  .+++||.||-|-+.... .+.+
T Consensus       115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l  180 (538)
T PRK06183        115 LEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTL  180 (538)
T ss_pred             HHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence            444555666654 89999999999998876  4454 443   35  37899999999888654 3444

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.91  E-value=0.2  Score=51.35  Aligned_cols=53  Identities=19%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017658           90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~  144 (368)
                      +.|.+.+++.|++|++++.|++|..++  |+|.||.+.    |+  .+.|+.||+|++-..
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g  232 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG  232 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence            566667888899999999999998875  788888752    43  579999999988743

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=93.90  E-value=0.25  Score=50.43  Aligned_cols=57  Identities=19%  Similarity=0.258  Sum_probs=46.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~  143 (368)
                      ..+...|.+.++++|++|+.+++|+++..+++ |+|.||.. +   |+  .+.|+.||+|++-.
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  228 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGY  228 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence            56899999999889999999999999988433 78888864 2   43  57899999999654

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.87  E-value=0.23  Score=50.21  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~  144 (368)
                      ..++..|.+.+++.|++|++++.|+++..++  |+|+||.+.    ++  .+.|+.||+|++-..
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            4688999998888899999999999999875  889998752    33  578999999998754

>PRK06116 glutathione reductase; Validated

Probab=93.64  E-value=0.27  Score=48.18  Aligned_cols=57  Identities=14%  Similarity=0.245  Sum_probs=45.0

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.++++|++|+++++|++|..+++ +.+. +.+ +|+++.+|.||++++..
T Consensus       207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~-v~~~~g~~i~~D~Vv~a~G~~  264 (450)
T PRK06116        207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSLT-LTLEDGETLTVDCLIWAIGRE  264 (450)
T ss_pred             CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceEE-EEEcCCcEEEeCEEEEeeCCC
Confidence            345778888889999999999999999987653 4343 454 46789999999998764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.64  E-value=0.24  Score=48.30  Aligned_cols=63  Identities=25%  Similarity=0.371  Sum_probs=48.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      .+.+.+.+.+.+++.|++|+++++|++|.. +  +++..+..+++++.+|.||++++...-..++.
T Consensus       190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~--~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~  252 (444)
T PRK09564        190 DKEITDVMEEELRENGVELHLNEFVKSLIG-E--DKVEGVVTDKGEYEADVVIVATGVKPNTEFLE  252 (444)
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCEEEEEec-C--CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHH
Confidence            345778888889999999999999999963 2  44556667777899999999998754333443

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=93.57  E-value=0.24  Score=49.46  Aligned_cols=56  Identities=13%  Similarity=0.198  Sum_probs=44.2

Q ss_pred             hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChh
Q 017658           86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~  143 (368)
                      ..++..+.+.+.+. |++|+++++|++|..++  |+|++|...  ++  ++.|+ .||+|++-.
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~  234 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGF  234 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence            35888888877664 99999999999998875  889888764  43  57886 688888775

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.49  E-value=0.33  Score=49.34  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~~  144 (368)
                      +..|...|.+.+.+.|++|+.++.|+++..+++ |+|.||.+ +   |+  .+.|+.||+|++-..
T Consensus       147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            356899999988889999999999999998644 77888865 2   43  578999999988754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=93.41  E-value=0.32  Score=49.81  Aligned_cols=59  Identities=15%  Similarity=0.225  Sum_probs=48.0

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..+++.|.+.+.+.|++|+.++.+++|..+++ |+|.||..    +|+  .+.|+.||+|++-..
T Consensus       186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            356899999988888999999999999987643 78888765    243  579999999988754

>TIGR00292 thiazole biosynthesis enzyme

Probab=93.37  E-value=0.4  Score=43.13  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=45.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C-----eEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VV~a~p~~  143 (368)
                      .+.+.|.+.+.+.|++|+.++.|++|..+++..+|.+|.++       |     .++.|+.||.|++..
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence            47888888888899999999999999987631168887764       1     268999999999854

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=93.35  E-value=0.32  Score=46.36  Aligned_cols=53  Identities=28%  Similarity=0.351  Sum_probs=41.8

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      .+...+.+.++++ +.+|+ ...|++|..++  ++|++|.+. |+.+.+|.||+|+++
T Consensus        96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   96 KYSRAMREKLESHPNLTII-QGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHHhcCCCeEEE-EcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence            3556666777775 56764 77999999988  889999987 779999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=93.28  E-value=0.34  Score=49.87  Aligned_cols=58  Identities=19%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ...|...|.+.+.+.|++|+.+++|++|..++  |+|.|+.+    +|+  .+.|+.||+|++-..
T Consensus       157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g  220 (657)
T PRK08626        157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG  220 (657)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            34688889888888999999999999999876  78888765    243  468999999998643

>PRK07512 L-aspartate oxidase; Provisional

Probab=93.27  E-value=0.2  Score=50.03  Aligned_cols=58  Identities=22%  Similarity=0.352  Sum_probs=47.1

Q ss_pred             chhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~a~p~~~  144 (368)
                      +..+++.|.+.+++. |++|+.+++|++|..++  |+|.+|.+.  ++  .+.|+.||+|++-..
T Consensus       135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            356999999988875 89999999999998765  788887753  33  589999999998843

>TIGR00551 nadB L-aspartate oxidase

Probab=93.24  E-value=0.23  Score=49.17  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=47.1

Q ss_pred             hhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC--C--eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++ .|++|++++.|++|..++  ++|.+|.+.  +  ..+.++.||+|++...
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            4688999999987 699999999999998765  778877654  3  3689999999998864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=93.22  E-value=0.21  Score=47.34  Aligned_cols=53  Identities=17%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l  145 (368)
                      ..++..|.+.+.+. |++|+.+++|++|.  .  +   .|+++++.+.||+||+|++++.-
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~--~--~---~v~t~~g~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVE--T--G---TVRTSRGDVHADQVFVCPGADFE  198 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEe--c--C---eEEeCCCcEEeCEEEECCCCChh
Confidence            35778888888775 99999999999995  2  3   25566556889999999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08275 putative oxidoreductase; Provisional

Probab=93.16  E-value=0.34  Score=48.86  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+.++.|++|..+++ |+|.||..    +|+  .+.|+.||+|++...
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            46889999999999999999999999988633 77888763    243  479999999998853

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=93.15  E-value=0.28  Score=48.52  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=44.2

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEE---EC-Ce--EEecCEEEEeeChhhHH
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~---~~-g~--~~~ad~VV~a~p~~~l~  146 (368)
                      .|.++|.+.+.+ .|++|+++++|++|..+++ +.+ .+.   ++ ++  +++||+||+|++.+...
T Consensus       185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~  249 (497)
T PRK13339        185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGW-EVTVKDRNTGEKREQVADYVFIGAGGGAIP  249 (497)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCE-EEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence            588899888864 4899999999999987733 443 343   23 42  68999999999998743

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.09  E-value=0.31  Score=46.75  Aligned_cols=55  Identities=18%  Similarity=0.229  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+++.|++|+.+++|++|..++  +.+. |.+. |++++||.||.|.+...
T Consensus       112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        112 VLINALRKRAEALGIDLREATSVTDFETRD--EGVT-VTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence            588889888888899999999999998766  4454 5554 67899999999988753

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.95  E-value=0.31  Score=48.97  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=46.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+...|.+.+++.|++|++++.|+++..+++ ++|.+|..    +|+  .+.|+.||+|++-..
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            56889999988889999999999999988763 45887653    243  589999999998753

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=92.87  E-value=0.36  Score=48.64  Aligned_cols=57  Identities=21%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             hhhhHHHHHHHHH---c-CCEEeccceeeeEEecCCCceEEEEEEC-----------------Ce--EEecCEEEEeeCh
Q 017658           86 EKIFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVCG-----------------KE--TYSAGAVVLAVGI  142 (368)
Q Consensus        86 ~~L~~~l~~~l~~---~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-----------------g~--~~~ad~VV~a~p~  142 (368)
                      ..++..|.+.+++   . |++|+++++++++..++  |+|+||.+.                 ++  ++.|+.||+|++-
T Consensus       148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG  225 (549)
T PRK12834        148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG  225 (549)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence            3588888777652   3 59999999999999865  889998741                 12  5789999999876


Q ss_pred             hh
Q 017658          143 ST  144 (368)
Q Consensus       143 ~~  144 (368)
                      ..
T Consensus       226 f~  227 (549)
T PRK12834        226 IG  227 (549)
T ss_pred             cc
Confidence            54

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.87  E-value=0.42  Score=45.61  Aligned_cols=56  Identities=13%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..+...+.+.+++.|++++++++|++|..++  +.+ .|.+. |+++.+|.||++++...
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGI-RATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEE-EEEEcCCcEEECCEEEECcCCCc
Confidence            3466677788899999999999999998655  433 35554 67899999999998754

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=92.80  E-value=0.21  Score=47.94  Aligned_cols=64  Identities=22%  Similarity=0.304  Sum_probs=53.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      ..+-+.+...++++|+++++++.|.++..+.+ |++.-|.+. |.++.||.||+-+++....+++.
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence            45778888889999999999999999998766 888777776 77999999999999875554433

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.79  E-value=0.41  Score=48.54  Aligned_cols=60  Identities=28%  Similarity=0.352  Sum_probs=47.7

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCC--CceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..+.+.|.+.+++.|++|++++.|++|..+++  +|+|.|+..    +|+  .+.|+.||+|++-..
T Consensus       139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            356889999999999999999999999987641  157888764    244  578999999988754

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.73  E-value=0.34  Score=34.84  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG  127 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~  127 (368)
                      .+.+.+...+.+.+++.|++|++++.|++|..+++ + ++ |++.
T Consensus        37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~   78 (80)
T PF00070_consen   37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE   78 (80)
T ss_dssp             TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred             hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence            44566888888999999999999999999998875 5 66 6653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.59  E-value=0.51  Score=46.36  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=43.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC---eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.++++|++|+++++|++|..++  +.+. +.+ ++   +++++|.||++++...
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVT-VTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEEeCCeeEEEEeCEEEEeeCCcc
Confidence            4577788888999999999999999998665  4443 443 34   5799999999988753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.43  E-value=0.47  Score=46.56  Aligned_cols=57  Identities=14%  Similarity=0.135  Sum_probs=45.3

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+. +.+. |+++++|.||++++...
T Consensus       215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vi~a~G~~p  272 (461)
T PRK05249        215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVI-VHLKSGKKIKADCLLYANGRTG  272 (461)
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence            34577888888999999999999999998765  4343 4444 67899999999998753

>PRK07395 L-aspartate oxidase; Provisional

Probab=92.36  E-value=0.37  Score=48.54  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=46.7

Q ss_pred             chhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~a~p~~  143 (368)
                      +..+++.|.+.+++. |++|++++.|++|..++++|+|.||...  |+  .+.|+.||+|++-.
T Consensus       133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~  196 (553)
T PRK07395        133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG  196 (553)
T ss_pred             hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence            356999999988754 8999999999999876422778887653  44  37899999999874

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.34  E-value=0.61  Score=45.46  Aligned_cols=56  Identities=25%  Similarity=0.243  Sum_probs=43.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+++.|++++++++|++|..++  +++. +..+++++.+|.||++++...
T Consensus       198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~-v~~~g~~i~~D~viva~G~~p  253 (438)
T PRK07251        198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQVL-VVTEDETYRFDALLYATGRKP  253 (438)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEEE-EEECCeEEEcCEEEEeeCCCC
Confidence            4466677777889999999999999998654  4443 455677899999999987643

>PLN02507 glutathione reductase

Probab=92.19  E-value=0.58  Score=46.50  Aligned_cols=57  Identities=19%  Similarity=0.296  Sum_probs=44.9

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      +...+.+.+.+.+++.|++|++++.|++|..++  +++. +..+ |+++++|.||++++..
T Consensus       242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~  299 (499)
T PLN02507        242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIK-VITDHGEEFVADVVLFATGRA  299 (499)
T ss_pred             cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEE-EEECCCcEEEcCEEEEeecCC
Confidence            345577788888999999999999999998654  4443 4444 6689999999998865

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=92.19  E-value=0.61  Score=45.78  Aligned_cols=56  Identities=20%  Similarity=0.301  Sum_probs=44.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC--eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +++. +.. +|  .++++|.||++++...
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence            4567788888999999999999999998765  5554 444 35  4799999999988653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07804 L-aspartate oxidase; Provisional

Probab=92.11  E-value=0.44  Score=47.89  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=47.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C--eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g--~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+.++.|++|..+++ |+|.++.+.       +  ..+.|+.||+|++...
T Consensus       144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~  210 (541)
T PRK07804        144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG  210 (541)
T ss_pred             HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence            46899999999999999999999999988654 678887652       2  2579999999998743

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=92.07  E-value=0.55  Score=45.83  Aligned_cols=56  Identities=16%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.++++|+++++++.|++|..++  +++ .+..+++++.+|.||++++...
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~~p  254 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGRQP  254 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecCCc
Confidence            4577788888999999999999999998765  544 3555555789999999987643

>PRK14694 putative mercuric reductase; Provisional

Probab=91.91  E-value=0.59  Score=46.05  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+++.|++|++++.|++|..++  +.+ .+..+++++++|.||++++...
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p  273 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRTP  273 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCCC
Confidence            4578888889999999999999999998655  433 3555666899999999987654

>PRK08071 L-aspartate oxidase; Provisional

Probab=91.85  E-value=0.36  Score=48.11  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+.++|.+.++ .|++|+.++.|++|..++  |+|.+|.+.   ++  .+.|+.||+|++...
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            458888888776 589999999999998765  778887653   33  579999999998744

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.83  E-value=0.69  Score=45.83  Aligned_cols=57  Identities=12%  Similarity=0.263  Sum_probs=45.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.++++|++|++++.|++|..+++ +. ..+.+ +|+++++|.||++++..
T Consensus       230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~  287 (486)
T TIGR01423       230 DSTLRKELTKQLRANGINIMTNENPAKVTLNAD-GS-KHVTFESGKTLDVDVVMMAIGRV  287 (486)
T ss_pred             CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ce-EEEEEcCCCEEEcCEEEEeeCCC
Confidence            456788899999999999999999999986643 42 33554 46789999999998864

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=91.80  E-value=0.69  Score=45.25  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|+++++++.|++|..+++ + +. +.+ +|+++++|.||++++..
T Consensus       206 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~-v~~~~g~~i~~D~viva~G~~  262 (446)
T TIGR01424       206 DDDMRALLARNMEGRGIRIHPQTSLTSITKTDD-G-LK-VTLSHGEEIVADVVLFATGRS  262 (446)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-e-EE-EEEcCCcEeecCEEEEeeCCC
Confidence            345667788889999999999999999986552 3 33 444 46789999999998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07190 hypothetical protein; Provisional

Probab=91.67  E-value=0.67  Score=45.94  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  145 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l  145 (368)
                      +-..|.+.+++.|++|+.+++|++|..++  ++++....+|++++|++||.|.+....
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g~~v~a~~vVgADG~~S~  166 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNGERIQSRYVIGADGSRSF  166 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCCcEEEeCEEEECCCCCHH
Confidence            44556667888899999999999999877  345433334678999999999998653

>PRK06126 hypothetical protein; Provisional

Probab=91.50  E-value=17  Score=36.57  Aligned_cols=56  Identities=23%  Similarity=0.247  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE--C-Ce--EEecCEEEEeeChhhH
Q 017658           88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--G-KE--TYSAGAVVLAVGISTL  145 (368)
Q Consensus        88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~--~-g~--~~~ad~VV~a~p~~~l  145 (368)
                      |-..|.+.+++. |++|+++++|++|..++  ++|+.+..  . |+  ++++|+||.|-+....
T Consensus       128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             HHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence            455666666654 78999999999998776  44553222  1 43  6899999999988653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=91.47  E-value=0.77  Score=44.11  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=43.2

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL  148 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l  148 (368)
                      .+.+.+.+.++++|++|+++++|++|.. +  +.+. +.+. |+++.+|.||++++...-..+
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~-v~l~~g~~i~aD~Vv~a~G~~pn~~l  245 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVE-LTLQSGETLQADVVIYGIGISANDQL  245 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEE-EEECCCCEEECCEEEECCCCChhhHH
Confidence            3556677778889999999999999975 3  4343 5554 778999999999987533333

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=91.40  E-value=0.71  Score=47.08  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=45.4

Q ss_pred             hhhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+...|.+.++++| ++|+.+++|++|..++  ++|++|..    +++  .+.|+.||+|++...
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            357888888887775 9999999999998766  77888753    243  689999999999754

>PRK14727 putative mercuric reductase; Provisional

Probab=91.33  E-value=0.7  Score=45.66  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=44.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +.+.+.+.+.+++.|++|+++++|++|..++  +.+ .+..+++++.+|.||++++...
T Consensus       228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~-~v~~~~g~i~aD~VlvA~G~~p  283 (479)
T PRK14727        228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGF-VLTTGHGELRAEKLLISTGRHA  283 (479)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEE-EEEEcCCeEEeCEEEEccCCCC
Confidence            4567778888999999999999999998765  433 3555556799999999998864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=91.19  E-value=0.96  Score=44.34  Aligned_cols=60  Identities=10%  Similarity=0.045  Sum_probs=45.4

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C-eEEecCEEEEeeChhhH
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g-~~~~ad~VV~a~p~~~l  145 (368)
                      +...+.+.+.+.+++.|+++++++.|++|..+++ +.+ .+.++ | +.+++|.||++++...-
T Consensus       205 ~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       205 FDSMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCCcC
Confidence            3445778888889999999999999999986542 433 35554 5 47999999999987533

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=91.19  E-value=0.74  Score=45.34  Aligned_cols=55  Identities=18%  Similarity=0.165  Sum_probs=43.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.++++|++|+++++|++|..++  +++. +.+ +|+++++|.||++++..
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~l~~D~vl~a~G~~  273 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVV-VTLTDGRTVEGSHALMAVGSV  273 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEE-EEECCCcEEEecEEEEeecCC
Confidence            4466778888999999999999999998655  4454 444 46789999999998764

>PRK06834 hypothetical protein; Provisional

Probab=91.10  E-value=0.73  Score=45.69  Aligned_cols=55  Identities=24%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+-+.|.+.+++.|++|+.+++|++|..++  +.|. |++. |++++||+||.|.+...
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~-v~~~~g~~i~a~~vVgADG~~S  156 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDD--TGVD-VELSDGRTLRAQYLVGCDGGRS  156 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCC
Confidence            466777788888899999999999999876  4454 5554 56899999999988854

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=91.01  E-value=0.83  Score=37.63  Aligned_cols=41  Identities=29%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             CCEE-eccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeCh
Q 017658          100 GCEF-LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  142 (368)
Q Consensus       100 G~~i-~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~  142 (368)
                      |++| +...+|++|...++ + ...+..+|..+.||.||+|++-
T Consensus       114 ~i~v~~~~~~V~~i~~~~~-~-~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDD-G-YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCC-c-EEEEECCCCEEEeCEEEECCCC
Confidence            5443 35679999998874 4 3323344778999999999864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=90.91  E-value=0.74  Score=44.29  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHHhhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELIK  150 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ll~  150 (368)
                      .|.+.|.+.+++.|++|+.+++|++|..++  +.++ |++. |++++||.||.|-+... +.+.+.
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg  175 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSG--DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAG  175 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence            466788888888899999999999998776  4454 5554 66899999999998854 345543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.85  E-value=0.75  Score=48.74  Aligned_cols=62  Identities=10%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll  149 (368)
                      ...+.+.+.++++|++|++++.|++|..+++ +.+..+... |+++.+|.||++++...-..|+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~  250 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDKLA  250 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCchHH
Confidence            3456777889999999999999999976432 334445554 7789999999999876443443

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.82  E-value=1  Score=45.74  Aligned_cols=57  Identities=21%  Similarity=0.234  Sum_probs=45.8

Q ss_pred             hhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+.+ .|++|+.++.|++|..++  |+|.||..    +++  .+.|+.||+|++-..
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            4588999988766 589999999999998765  77888754    244  579999999998853

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.79  E-value=0.83  Score=46.78  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHc--------C-----CEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeCh
Q 017658           86 EKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  142 (368)
Q Consensus        86 ~~L~~~l~~~l~~~--------G-----~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~  142 (368)
                      ..+++.|.+.++++        |     ++|+++++|++|..++  |+|.++..    +++  .+.|+.||+|++.
T Consensus       138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG  211 (626)
T PRK07803        138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGG  211 (626)
T ss_pred             HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence            46889999888776        7     9999999999999765  77887753    243  5799999999986

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=90.76  E-value=0.83  Score=42.65  Aligned_cols=121  Identities=14%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             chhhhhccC-ccHH-HHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHh--hcCCCcceeeecCCcch
Q 017658           11 DVAWRKYDS-ITAR-ELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTLRE   86 (368)
Q Consensus        11 ~~~~~~ld~-~S~~-d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~--~~~~~~~~~~~~GG~~~   86 (368)
                      ...|+++.. .+.. ...+.++++....+-+.-.++-.+   + -+.++...+..+..|+.  +.-+-+...||+-|.++
T Consensus       155 ~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~E  230 (434)
T COG5044         155 KSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGE  230 (434)
T ss_pred             hhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCCCcceeeccCchh
Confidence            334444433 3333 334456666654443333322211   1 34555555555544431  11122345578877776


Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEe
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  139 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a  139 (368)
                       |.+..++.-.=.||++.+|+++.+|....  . |.+|..++.+..|..||..
T Consensus       231 -l~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~~~ka~KiI~~  279 (434)
T COG5044         231 -LSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSLTQKAGKIISS  279 (434)
T ss_pred             -hhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcceeecCcccCC
Confidence             99999987766799999999999998765  2 4445555668888888864

>TIGR01810 betA choline dehydrogenase

Probab=90.48  E-value=0.54  Score=47.16  Aligned_cols=52  Identities=17%  Similarity=0.185  Sum_probs=40.8

Q ss_pred             HHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce---EEecCEEEEeeChhhHHHhhh
Q 017658           97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~---~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      ++.+.+|++++.|++|..++  +++++|++.  ++   .+.++.||+++++-...+||-
T Consensus       205 ~r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl  261 (532)
T TIGR01810       205 KRPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQ  261 (532)
T ss_pred             cCCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHH
Confidence            35579999999999999986  788998864  32   258899999999866666554

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.01  E-value=1  Score=45.44  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+ .+..+++++.+|.||++++...
T Consensus       310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p  365 (561)
T PRK13748        310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRAP  365 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCCc
Confidence            4577888888999999999999999998655  543 3555556799999999988743

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=89.94  E-value=1.2  Score=43.73  Aligned_cols=55  Identities=16%  Similarity=0.294  Sum_probs=42.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CC--eEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.++++|++|+++++|++|..++  +.+. +.+   +|  +++++|.||++++..
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~  272 (466)
T PRK07818        213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVT-VTVSKKDGKAQELEADKVLQAIGFA  272 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEE-EEEEecCCCeEEEEeCEEEECcCcc
Confidence            4577888888999999999999999997654  4343 332   34  379999999998864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=89.72  E-value=1.1  Score=40.72  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=43.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|+++++ +.|++|..++  +.+ .|.+. ++++.+|+||+|++..
T Consensus        57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~-~v~~~~~~~~~~d~liiAtG~~  111 (300)
T TIGR01292        57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPF-KVKTGDGKEYTAKAVIIATGAS  111 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--Cee-EEEeCCCCEEEeCEEEECCCCC
Confidence            35778888888999999999 8999998765  433 35555 5689999999999974

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08163 salicylate hydroxylase; Provisional

Probab=89.68  E-value=0.97  Score=43.23  Aligned_cols=56  Identities=14%  Similarity=0.226  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017658           87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  145 (368)
Q Consensus        87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l  145 (368)
                      .|.+.|.+.+.+.| ++++.+++|++|..++  +.++ |... |+++.||.||.|.+....
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChH
Confidence            36777888877765 8999999999998765  4454 5544 678999999999888654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=89.66  E-value=1.2  Score=43.67  Aligned_cols=57  Identities=28%  Similarity=0.296  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  145 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l  145 (368)
                      .+-+-|.+...+.|++++.++ |+++..+++ |.|+.|++. |++++||.||=|.+...+
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccch
Confidence            466778888888999999885 888887765 888889886 778999999999987543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK06184 hypothetical protein; Provisional

Probab=89.64  E-value=1  Score=44.70  Aligned_cols=55  Identities=18%  Similarity=0.091  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-CeEEecCEEEEeeChhhH
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTL  145 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~~~~ad~VV~a~p~~~l  145 (368)
                      +-+.|.+.+++.|++|+++++|++|..++  +.|+ +.+   + +++++||+||.|.+....
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDA--DGVT-ARVAGPAGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEE-EEEEeCCCeEEEEeCEEEECCCCchH
Confidence            55677777888899999999999998776  3454 333   3 468999999999998653

>PRK09897 hypothetical protein; Provisional

Probab=89.59  E-value=1.2  Score=44.61  Aligned_cols=52  Identities=17%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             hhHHHHHHHHHcC--CEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeCh
Q 017658           88 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGI  142 (368)
Q Consensus        88 L~~~l~~~l~~~G--~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~  142 (368)
                      ..+.+.+.+++.|  ++|+.+++|++|..++  +++ .|.++  ++.+.||.||+|++-
T Consensus       109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~-~V~t~~gg~~i~aD~VVLAtGh  164 (534)
T PRK09897        109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGV-MLATNQDLPSETFDLAVIATGH  164 (534)
T ss_pred             HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEE-EEEECCCCeEEEcCEEEECCCC
Confidence            4444555566666  6888999999998876  444 36653  367999999999885

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=89.54  E-value=1.1  Score=44.68  Aligned_cols=55  Identities=15%  Similarity=0.251  Sum_probs=45.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++++++++|++|..++  +.. .|.+. |+.+.+|+||+|++..
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~-~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIETED--GLI-VVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeE-EEEECCCCEEEeCEEEECCCCC
Confidence            3578888889999999999999999998765  433 45554 6689999999999985

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=89.30  E-value=1.5  Score=43.30  Aligned_cols=55  Identities=13%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C--C--eEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~--g--~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.++++|++|+++++|++|..++  +++. +.. +  |  +++++|.||++++..
T Consensus       224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~  283 (475)
T PRK06327        224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVS-VAYTDADGEAQTLEVDKLIVSIGRV  283 (475)
T ss_pred             HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEE-EEEEeCCCceeEEEcCEEEEccCCc
Confidence            4577888888999999999999999998665  4443 433 2  3  468999999998864

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=89.02  E-value=1.6  Score=42.78  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=42.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC--eEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g--~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+ .+..+|  .++++|.||++++..
T Consensus       211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~  267 (458)
T PRK06912        211 EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRK  267 (458)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCc
Confidence            4477788888999999999999999997554  433 244444  368999999999864

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=88.93  E-value=1.3  Score=42.95  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=44.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI  149 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll  149 (368)
                      ..+.+.+.+.+++.|+++++++.|++|..+   +.+ .+..+|+++.+|.||++++...-..++
T Consensus       179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l  238 (427)
T TIGR03385       179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE---ERV-KVFTSGGVYQADMVILATGIKPNSELA  238 (427)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEecC---CCE-EEEcCCCEEEeCEEEECCCccCCHHHH
Confidence            346677778889999999999999999743   333 233457789999999998875433343

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06370 mercuric reductase; Validated

Probab=88.87  E-value=1.7  Score=42.76  Aligned_cols=56  Identities=14%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEE-EEEEC--CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCG--KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~-~v~~~--g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+. .+...  ++++++|.||++++..
T Consensus       212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~Vi~A~G~~  270 (463)
T PRK06370        212 EDVAAAVREILEREGIDVRLNAECIRVERDG--DGIAVGLDCNGGAPEITGSHILVAVGRV  270 (463)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence            3466778888999999999999999998765  3332 22222  3479999999998864

>PTZ00052 thioredoxin reductase; Provisional

Probab=88.86  E-value=1.6  Score=43.41  Aligned_cols=59  Identities=20%  Similarity=0.159  Sum_probs=45.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhhHH
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~l~  146 (368)
                      ...+.+.+.+.+++.|+++++++.|++|...+  +.+. +.. +|+++.+|.||++++...-.
T Consensus       221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIK-VLFSDGTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEcCEEEEeeCCCCCc
Confidence            34567788888999999999999999998654  3333 444 47789999999999875433

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=88.86  E-value=2.1  Score=43.40  Aligned_cols=58  Identities=26%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             chhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      +..|.++|.+.+.+. |++++.++.|++|..++  |+|.||..    +|+  .+.|+.||+|++-..
T Consensus       131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (580)
T TIGR01176       131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG  195 (580)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence            356999999887764 78999999999999875  78888764    243  579999999987744

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=88.75  E-value=1.1  Score=43.50  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=42.0

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      +.+.+.+.+.+.++++|++|+++++|++|.  +  +.|.  ..+|+++.+|.||++.+..
T Consensus       226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~--~~v~--~~~g~~i~~d~vi~~~G~~  279 (424)
T PTZ00318        226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVL--D--KEVV--LKDGEVIPTGLVVWSTGVG  279 (424)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEeCCeEEEEe--C--CEEE--ECCCCEEEccEEEEccCCC
Confidence            345577888888999999999999999985  3  3232  2347789999999998753

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=88.70  E-value=1.2  Score=49.01  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHc---CCEEeccceeeeEEecCC---Cc----eEEEEEEC------Ce--EEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTR---GCEFLDGRRVTDFIYDEE---RC----CISDVVCG------KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~---G~~i~~~t~V~~I~~~~~---~g----~v~~v~~~------g~--~~~ad~VV~a~p~~~  144 (368)
                      .++..|.+.+++.   |++|+++++|+++..+++   +|    +|+||.+.      |+  .+.|+.||+|++-..
T Consensus       545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~  620 (1167)
T PTZ00306        545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS  620 (1167)
T ss_pred             HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence            4778888887754   899999999999998641   12    78888753      33  579999999998744

>TIGR02462 pyranose_ox pyranose oxidase

Probab=88.65  E-value=1.1  Score=44.81  Aligned_cols=63  Identities=17%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCC-ceEEEEEE----CCe--EEecCEEEEeeChhhHHHhhh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~-g~v~~v~~----~g~--~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      |..++.+.+++...+|++++.|++|..++++ ++|++|.+    +|+  ++.|+.||+|+..=...+||-
T Consensus       216 ~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL  285 (544)
T TIGR02462       216 FDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV  285 (544)
T ss_pred             hhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence            3343333333334899999999999987542 36777754    243  589999999999866666653

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PTZ00058 glutathione reductase; Provisional

Probab=88.61  E-value=1.7  Score=43.81  Aligned_cols=57  Identities=16%  Similarity=0.162  Sum_probs=43.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~  143 (368)
                      +.+.+.+.+.+++.|++|++++.|++|..+++ +++..+..++ +++++|.||++++..
T Consensus       278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        278 ETIINELENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECCEEEECcCCC
Confidence            45778888889999999999999999986542 3343222233 479999999998864

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.52  E-value=1.8  Score=43.93  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             chhhhHHHHHHHHHcC----CEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G----~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~  144 (368)
                      +..|...|.+.+++.+    ++|+.++.|+++..+++ |+|.||.+.    ++  .+.|+.||+|++-..
T Consensus       132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  200 (589)
T PRK08641        132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG  200 (589)
T ss_pred             HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence            3568888888776554    77999999999998644 789988752    33  478999999988754

>PLN02815 L-aspartate oxidase

Probab=88.46  E-value=1.3  Score=45.02  Aligned_cols=58  Identities=12%  Similarity=0.237  Sum_probs=44.6

Q ss_pred             hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCc--eEEEEEE-C---Ce--EEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC-G---KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g--~v~~v~~-~---g~--~~~ad~VV~a~p~~  143 (368)
                      ..+..+|.+.++++ |++|+.++++++|..+++++  +|.|+.. +   |+  .+.|+.||+|++-.
T Consensus       155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  221 (594)
T PLN02815        155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA  221 (594)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence            46889998888765 89999999999999864313  3778764 2   43  56899999999864

>TIGR02053 MerA mercuric reductase

Probab=88.19  E-value=2.2  Score=41.92  Aligned_cols=55  Identities=13%  Similarity=0.130  Sum_probs=42.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C--CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~--g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+ .+.+  +  ++++++|.||++++..
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~-~v~~~~~~~~~~i~~D~ViiA~G~~  265 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGK-IITVEKPGGQGEVEADELLVATGRR  265 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEE-EEEEEeCCCceEEEeCEEEEeECCC
Confidence            4467778888899999999999999998755  322 2333  2  3579999999998864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=88.15  E-value=1.4  Score=46.49  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.+.+.++++|++|++++.|++|.-+   +++..|.+. |+++.+|.||++++...
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEECCCCEEEcCEEEECCCCCc
Confidence            34566777889999999999999999643   335566665 77899999999998753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=88.14  E-value=2.3  Score=41.94  Aligned_cols=58  Identities=16%  Similarity=0.231  Sum_probs=43.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC--eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.++++|++|++++.|++|..+.+ +++..+.. +|  +++.+|.||++++...
T Consensus       221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p  281 (472)
T PRK05976        221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP  281 (472)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence            44777888889999999999999999976212 33443433 45  3689999999998853

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=88.04  E-value=1.6  Score=41.62  Aligned_cols=56  Identities=11%  Similarity=0.057  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  145 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l  145 (368)
                      .|-+.|.+.+++. |++|+.+++|+++..++  +.+ .|.++ |++++||.||.|.+....
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDD--DGW-ELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeE-EEEECCCCEEEeCEEEEeCCCCch
Confidence            4667777777776 99999999999998766  434 45554 668999999999998653

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=88.03  E-value=2.1  Score=43.41  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..|...|.+.+.+. |++|+.++.|++|..++  |+|.||..    +|+  .+.|+.||+|++-..
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  196 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  196 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence            46888888877765 78999999999999875  77887654    243  679999999998643

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=88.00  E-value=1.7  Score=43.37  Aligned_cols=55  Identities=15%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|.+++++++|++|..++  +. +.|.+. |+++.+|.||+|++..
T Consensus       266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~-~~V~~~~g~~i~a~~vViAtG~~  321 (517)
T PRK15317        266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GL-IEVELANGAVLKAKTVILATGAR  321 (517)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--Ce-EEEEECCCCEEEcCEEEECCCCC
Confidence            3588899999999999999999999998865  43 345555 6689999999999984

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=87.76  E-value=1.7  Score=41.36  Aligned_cols=54  Identities=17%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+++.| ++++ ++.|++|..++  +.+. |.+. |++++||.||.|.+...
T Consensus       112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        112 LIERALWAALRFQPNLTWF-PARAQGLEVDP--DAAT-LTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEE-EEECCCCEEEeeEEEEeCCCCc
Confidence            57888888888887 8899 99999998766  4443 6664 56899999999999853

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=87.66  E-value=2.4  Score=42.01  Aligned_cols=56  Identities=16%  Similarity=0.100  Sum_probs=43.2

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC---eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|++++.|++|...+  +.+. |.. ++   +++++|.||++++..
T Consensus       219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVK-VTFTDSTNGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEE-EEEecCCcceEEEeCEEEEEecCC
Confidence            34577888888999999999999999998654  4333 443 33   379999999999864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK09077 L-aspartate oxidase; Provisional

Probab=87.14  E-value=2.7  Score=42.26  Aligned_cols=60  Identities=18%  Similarity=0.209  Sum_probs=45.8

Q ss_pred             chhhhHHHHHHHHHc-CCEEeccceeeeEEecC----CCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVCG----KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~----~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~  144 (368)
                      +..+...|.+.++++ |++|+.+++|+++..++    ++|+|.+|...    |+  .+.++.||+|++...
T Consensus       137 G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        137 GKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence            356888888888765 89999999999998753    12678887652    43  579999999988754

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=87.01  E-value=36  Score=34.23  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEE-EEEC-Ce-EEecCEEEEeeChhh-HHHhhh
Q 017658           88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISD-VVCG-KE-TYSAGAVVLAVGIST-LQELIK  150 (368)
Q Consensus        88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~-v~~~-g~-~~~ad~VV~a~p~~~-l~~ll~  150 (368)
                      +-+.|.+.+.+. |++|+++++|+++..++  +.++. +... ++ ++++|.||.|.+... +.+.+.
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg  192 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG  192 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence            445566666665 68999999999998776  44432 2222 43 689999999998754 444443

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=86.97  E-value=2.7  Score=41.39  Aligned_cols=57  Identities=23%  Similarity=0.251  Sum_probs=42.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEE-EEE--CC--eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVC--GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~-v~~--~g--~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|++++.|++|..++  +.+.. +..  +|  +++++|.||++++..
T Consensus       214 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~  275 (466)
T PRK06115        214 DTETAKTLQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIGRR  275 (466)
T ss_pred             CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence            34577888888999999999999999998654  33321 221  22  479999999999864

>TIGR00136 gidA glucose-inhibited division protein A

Probab=86.72  E-value=2.1  Score=43.26  Aligned_cols=56  Identities=18%  Similarity=0.269  Sum_probs=42.3

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+...+.+.+++. |++++. ..|+++..+++ +++.+|.+. |..+.|+.||+|++...
T Consensus        97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        97 LYRKAMRNALENQPNLSLFQ-GEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHHcCCCcEEEE-eEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence            4556777778877 567764 47888876633 678888887 56899999999999984

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK10262 thioredoxin reductase; Provisional

Probab=86.69  E-value=1.6  Score=40.58  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-----C--eEEecCEEEEeeChhhHHHh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGISTLQEL  148 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-----g--~~~~ad~VV~a~p~~~l~~l  148 (368)
                      .+.+.+.+.+++.|+++++++.|++|.-++  +++.+|++.     +  +++.+|.||++++...-..+
T Consensus       186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l  252 (321)
T PRK10262        186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAI  252 (321)
T ss_pred             HHHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhH
Confidence            366777777888899999999999997544  345555542     1  36999999999987543333

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=86.43  E-value=2.6  Score=42.76  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      +...+.+.+++. |++|+ .+.|++|..++  ++|.+|.+. |..+.|+.||.|++..
T Consensus       102 y~kaL~e~L~~~~nV~I~-q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192        102 YRAAMREILENQPNLDLF-QGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             HHHHHHHHHHcCCCcEEE-EeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcc
Confidence            456666667665 67874 66799998877  778888887 6689999999999964

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=86.43  E-value=2.6  Score=41.46  Aligned_cols=56  Identities=18%  Similarity=-0.051  Sum_probs=43.2

Q ss_pred             hhhhHHHHHHHHHcCCE--EeccceeeeEEecCCCceEEEEEEC--C-e--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~--i~~~t~V~~I~~~~~~g~v~~v~~~--g-~--~~~ad~VV~a~p~~~  144 (368)
                      +.+.+-|.+++++.|.+  |+++++|++|...+  ++ |.|++.  + .  +..+|+||+|++...
T Consensus       111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIFDAVVVCNGHYT  173 (461)
T ss_pred             HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEcCEEEEeccCCC
Confidence            35888888888888887  99999999998765  54 445543  2 2  468999999999753

>PRK02106 choline dehydrogenase; Validated

Probab=86.20  E-value=1.1  Score=45.17  Aligned_cols=53  Identities=9%  Similarity=0.130  Sum_probs=41.6

Q ss_pred             HHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce---EEecCEEEEeeChhhHHHhhhh
Q 017658           97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~---~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      ++.+.+|++++.|++|..++  +++++|++.  ++   .+.++.||++++.-...+||-.
T Consensus       212 ~~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~  269 (560)
T PRK02106        212 KRPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQL  269 (560)
T ss_pred             CCCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhh
Confidence            34579999999999999986  788888863  22   3588999999998777766543

>PLN02985 squalene monooxygenase

Probab=85.90  E-value=40  Score=33.70  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=40.7

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE---CCe--EEecCEEEEeeChhh-HHHhh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      .|.+.|.+.+++. |++++.+ .|+++..++  +.+.+|++   +|+  +++||.||.|-+... +.+.+
T Consensus       148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l  214 (514)
T PLN02985        148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSL  214 (514)
T ss_pred             HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHh
Confidence            4778888877766 6888866 577776554  55666765   354  467999999988754 33433

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=85.88  E-value=3.3  Score=42.29  Aligned_cols=59  Identities=15%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCC-CceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~-~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+...+.+.+++.+++|+.+++|+++..+++ +|+|.||..    +|+  .+.|+.||+|++...
T Consensus       126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  191 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV  191 (614)
T ss_pred             hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence            35666777777777789999999999998642 157888765    243  578999999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=85.87  E-value=1.9  Score=41.55  Aligned_cols=40  Identities=25%  Similarity=0.235  Sum_probs=35.1

Q ss_pred             CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      +.+.++|||-+||..  |+. +++..|...|..+|+.|+++.+
T Consensus       445 ~~t~i~gLy~aGdGA--G~a-rgI~~Aaa~Gi~~A~~i~~k~~  484 (486)
T COG2509         445 LSTSIKGLYPAGDGA--GLA-RGIVSAAADGIKAAEGIARKYG  484 (486)
T ss_pred             ceeeecceEEccccc--ccc-chhHHHhhhhHHHHHHHHHHhc
Confidence            457889999999998  676 6888999999999999998875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=85.79  E-value=1.9  Score=41.13  Aligned_cols=45  Identities=20%  Similarity=0.178  Sum_probs=36.7

Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      +.+++.|++++++++|++|..++  ..   |.++++++.+|++|+|++..
T Consensus        66 ~~~~~~gv~~~~~~~V~~id~~~--~~---v~~~~~~~~yd~LVlATG~~  110 (377)
T PRK04965         66 EFAEQFNLRLFPHTWVTDIDAEA--QV---VKSQGNQWQYDKLVLATGAS  110 (377)
T ss_pred             HHHHhCCCEEECCCEEEEEECCC--CE---EEECCeEEeCCEEEECCCCC
Confidence            44677899999999999998754  32   44678889999999999975

>PRK09126 hypothetical protein; Provisional

Probab=85.76  E-value=2.9  Score=39.89  Aligned_cols=55  Identities=24%  Similarity=0.202  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHH-HcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+. ..|++|+.+++|+++..++  +.+. |.+. |++++||.||.|-+...
T Consensus       111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S  167 (392)
T PRK09126        111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQ-VTLANGRRLTARLLVAADSRFS  167 (392)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEE-EEEcCCCEEEeCEEEEeCCCCc
Confidence            35566666654 4589999999999998765  4443 5554 67899999999998753

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=85.53  E-value=3.4  Score=38.98  Aligned_cols=61  Identities=16%  Similarity=0.330  Sum_probs=47.0

Q ss_pred             CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhh
Q 017658           82 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        82 GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~  144 (368)
                      |+|-.-+.....+.|...|.+++++|+|+.+..++| |.|. |.+.    +  ++++||.++++++=.-
T Consensus       248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP  314 (506)
T KOG1335|consen  248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPVE-IEVENAKTGKKETLECDVLLVSIGRRP  314 (506)
T ss_pred             cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-CceE-EEEEecCCCceeEEEeeEEEEEccCcc
Confidence            445445888888889999999999999999999887 6654 4432    3  4789999888876543

>PLN02661 Putative thiazole synthesis

Probab=84.98  E-value=3.5  Score=38.79  Aligned_cols=53  Identities=17%  Similarity=0.218  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHH-HcCCEEeccceeeeEEecCCCceEEEEEEC---------C------eEEecCEEEEeeC
Q 017658           87 KIFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG---------K------ETYSAGAVVLAVG  141 (368)
Q Consensus        87 ~L~~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---------g------~~~~ad~VV~a~p  141 (368)
                      .+...|.+.+. +.|++|+.++.|.++..++  +++.||..+         +      ..+.|++||+|++
T Consensus       173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG  241 (357)
T PLN02661        173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG  241 (357)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence            34566776554 4689999999999999876  778887741         1      1579999999998

>PLN02546 glutathione reductase

Probab=84.93  E-value=3.9  Score=41.30  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=43.3

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeE-EecCEEEEeeChhh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGIST  144 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~-~~ad~VV~a~p~~~  144 (368)
                      +.+.+.+.+.+.++++|++|++++.|++|..+++ +.+ .+..++++ ..+|.||++++...
T Consensus       291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~P  350 (558)
T PLN02546        291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRKP  350 (558)
T ss_pred             cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeecccc
Confidence            3455667777889999999999999999986543 544 35555444 45899999988754

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=84.76  E-value=3  Score=39.63  Aligned_cols=60  Identities=5%  Similarity=0.142  Sum_probs=46.0

Q ss_pred             hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh-HHHhh
Q 017658           87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      .|.+.|.+.+++.+ ++++++++|++|..++  ++|. |.+++++++||.||.|=+... +.+.+
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~~~~~adlvIgADG~~S~vR~~l  166 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSI-IKFDDKQIKCNLLIICDGANSKVRSHY  166 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEE-EEEcCCEEeeCEEEEeCCCCchhHHhc
Confidence            47788888887765 8899999999998776  4454 666666999999999988864 33444

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=84.56  E-value=3.7  Score=40.20  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce--EEecCEEEEeeChh
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~--~~~ad~VV~a~p~~  143 (368)
                      ++-+-+.+.+.+.+++.|.+++++++|+++...++ + + .+.+. |+  ++++|.|++|++=.
T Consensus       211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~-~-v-~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDD-G-V-LVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCC-e-E-EEEEecCCCCEEEeeEEEEccCCc
Confidence            44566888999999998899999999999988763 3 4 35554 43  78999999998864

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=84.53  E-value=4.2  Score=39.37  Aligned_cols=82  Identities=20%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             HHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC-CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017658          245 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  323 (368)
Q Consensus       245 ~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~-~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~  323 (368)
                      .+-++.|++..++++..=+. .++++- ..|...  .+... ..++||||||+-+.  .-  +.+-|+.+|..|+..+..
T Consensus       290 ~~~r~Ipgle~a~~~r~G~~-~~~~~i-~~p~~l--~~~l~~k~~~~l~~AGqi~g--~~--Gy~ea~a~G~~Ag~n~~~  361 (436)
T PRK05335        290 RVFRMIPGLENAEFVRYGVM-HRNTFI-NSPKLL--DPTLQLKKRPNLFFAGQITG--VE--GYVESAASGLLAGINAAR  361 (436)
T ss_pred             HHHhcccchhceEEEeceEE-eecccc-CChhhC--chhccccCCCCEEeeeeecC--ch--HHHHHHHHHHHHHHHHHH
Confidence            44557899987655432221 122211 011111  11222 25799999999884  32  335677889988888877


Q ss_pred             HhCCCCcccccc
Q 017658          324 YLGDGSFSKIIP  335 (368)
Q Consensus       324 ~~~~~~~~~~~~  335 (368)
                      .+. +.+..+.|
T Consensus       362 ~~~-g~~~~~~~  372 (436)
T PRK05335        362 LAL-GKEPVIPP  372 (436)
T ss_pred             Hhc-CCCCCCCC
Confidence            765 34444444

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=84.52  E-value=1.7  Score=40.85  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=37.7

Q ss_pred             CCcchhhhHHHHHHHHH------cCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeCh
Q 017658           82 GTLREKIFEPWMDSMRT------RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI  142 (368)
Q Consensus        82 GG~~~~L~~~l~~~l~~------~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~  142 (368)
                      +|.+..+++.|.+.+-+      .-.+|+.+++|+++...++ |++. +.+.    +  .++++|.||+|++.
T Consensus       269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~-l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVR-LTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEE-EEEEETTT--EEEEEESEEEE---E
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEE-EEEEECCCCCeEEEecCEEEEcCCc
Confidence            56666788777765421      2368999999999998874 4543 4443    2  36899999999975

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=84.51  E-value=3  Score=40.88  Aligned_cols=50  Identities=24%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----------C-----------eEEecCEEEEeeCh
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------K-----------ETYSAGAVVLAVGI  142 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----------g-----------~~~~ad~VV~a~p~  142 (368)
                      ..+.+++.|++|++++.+++|..+++ |++++|.+.          |           .++.+|.||++++.
T Consensus       315 ~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~  385 (449)
T TIGR01316       315 EIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN  385 (449)
T ss_pred             HHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence            34557788999999999999976443 667666541          1           14677777777765

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=84.27  E-value=2.8  Score=39.59  Aligned_cols=51  Identities=24%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.++++|++++++++|++|.  +  +.   |.+ +|+++.+|.||++++..
T Consensus       191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~  242 (364)
T TIGR03169       191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D--GA---LILADGRTLPADAILWATGAR  242 (364)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C--Ce---EEeCCCCEEecCEEEEccCCC
Confidence            3466777888999999999999999884  3  32   344 47789999999999864

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=84.17  E-value=37  Score=31.84  Aligned_cols=80  Identities=21%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCC--CCCCCCCceEEeccccccCCCCccchHH
Q 017658          233 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM--RGFTSFPNLFMAGDWITTRHGSWSQERS  310 (368)
Q Consensus       233 ~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p--~~~~~~~~L~laGd~~~~~~~~~~~egA  310 (368)
                      .+.+-..+.++-.|....|.+..+++...    |. +++.+  ..+...+  +.-.-..|||+|-.+.  |||   +..+
T Consensus       401 VD~d~F~qkiwP~L~nRVP~fetakVqsa----Wa-GyyD~--NtfD~ngViG~HP~y~Nly~atGFs--ghG---vqqs  468 (509)
T KOG2853|consen  401 VDHDYFYQKIWPHLANRVPAFETAKVQSA----WA-GYYDH--NTFDDNGVIGEHPLYTNLYMATGFS--GHG---VQQS  468 (509)
T ss_pred             cChHHHHhhhhHHHHhcccccceeeeeeh----hc-ccccc--cccccCCcccCCcceeeeeeeeccc--ccc---hhcc
Confidence            34455678888888888898876555432    32 22211  1111111  1112247999987666  554   4556


Q ss_pred             hHHHHHHHHHHHHH
Q 017658          311 YVTGLEAANRVVDY  324 (368)
Q Consensus       311 ~~Sg~~aA~~Il~~  324 (368)
                      ...|+..|+.|+.-
T Consensus       469 ~avgRAiaElIldG  482 (509)
T KOG2853|consen  469 PAVGRAIAELILDG  482 (509)
T ss_pred             hHHHHHHHHHHhcC
Confidence            67788888888764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=84.03  E-value=56  Score=33.80  Aligned_cols=41  Identities=24%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             EEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017658          102 EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  145 (368)
Q Consensus       102 ~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l  145 (368)
                      .++.+++|++|..++  ++|+ |.+. |+++++|.||.|-+....
T Consensus       208 ~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S~  249 (668)
T PLN02927        208 VIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWSK  249 (668)
T ss_pred             EEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCcH
Confidence            478999999998776  5566 5554 668999999999998653

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=83.65  E-value=0.34  Score=47.14  Aligned_cols=58  Identities=28%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhh
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g-~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      +.+.+++.|++|++++.|.++..++  ++|++|++.   | .++.|+.||=|++-..+..+..-
T Consensus        96 l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~  157 (428)
T PF12831_consen   96 LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA  157 (428)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            3344567899999999999999987  789998875   2 37899999999997766655443

>PRK08013 oxidoreductase; Provisional

Probab=83.62  E-value=3.4  Score=39.73  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=44.8

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh-HHHhh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      .|-+.|.+.+++. |++|+++++|++|..++  +.+. |++ +|++++||.||-|-+... +.+.+
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~  174 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAF-LTLKDGSMLTARLVVGADGANSWLRNKA  174 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence            4667777777775 78999999999998766  3343 444 477899999999988764 33444

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=83.60  E-value=42  Score=31.99  Aligned_cols=54  Identities=15%  Similarity=0.158  Sum_probs=38.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C--eEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g--~~~~ad~VV~a~p~~~  144 (368)
                      .|-+.|.+.+.+.|++++.+ .|++|..++  +.+. |.+.       +  .+++||.||.|-+...
T Consensus        93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        93 VFDSYLRERAQKAGAELIHG-LFLKLERDR--DGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             HHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEE-EEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence            35566777778889999766 599998766  4443 4332       2  3789999999999754

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=83.52  E-value=2.6  Score=41.59  Aligned_cols=47  Identities=19%  Similarity=0.174  Sum_probs=32.5

Q ss_pred             HHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------------C--eEEecCEEEEeeC
Q 017658           93 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------------K--ETYSAGAVVLAVG  141 (368)
Q Consensus        93 ~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------------g--~~~~ad~VV~a~p  141 (368)
                      .+.+++.|+++++++.+++|.-++  |+|++|.+.             |  .++.+|.||++++
T Consensus       336 ~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G  397 (471)
T PRK12810        336 VSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG  397 (471)
T ss_pred             HHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence            445677899999999999997544  777776542             1  2456666666655

>PRK07846 mycothione reductase; Reviewed

Probab=82.97  E-value=4.4  Score=39.69  Aligned_cols=57  Identities=18%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~  146 (368)
                      ..+.+.+.+.+ +.|++++++++|++|..++  +++. +.++ |+++++|.||++++...-.
T Consensus       207 ~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        207 DDISERFTELA-SKRWDVRLGRNVVGVSQDG--SGVT-LRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC--CEEE-EEECCCcEeecCEEEEEECCccCc
Confidence            33555554433 4689999999999998655  4443 5554 6789999999999875433

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=82.96  E-value=1.8  Score=45.69  Aligned_cols=48  Identities=23%  Similarity=0.230  Sum_probs=37.9

Q ss_pred             HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.++++|++++++++|++|..++  ..   |.+. |+++.+|++|+|++..
T Consensus        59 ~~~~~~~~~gv~~~~g~~V~~Id~~~--k~---V~~~~g~~~~yD~LVlATGs~  107 (785)
T TIGR02374        59 NSKDWYEKHGITLYTGETVIQIDTDQ--KQ---VITDAGRTLSYDKLILATGSY  107 (785)
T ss_pred             CCHHHHHHCCCEEEcCCeEEEEECCC--CE---EEECCCcEeeCCEEEECCCCC
Confidence            34456778899999999999998765  32   3444 6689999999999975

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=82.54  E-value=3.9  Score=40.14  Aligned_cols=32  Identities=19%  Similarity=0.176  Sum_probs=23.1

Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCceEEEEE
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV  125 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~  125 (368)
                      ..+.+++.|++|++++.|++|..++  +++++|.
T Consensus       317 ~~~~~~~~GV~i~~~~~v~~i~~~~--~~~~~v~  348 (457)
T PRK11749        317 EVEHAKEEGVEFEWLAAPVEILGDE--GRVTGVE  348 (457)
T ss_pred             HHHHHHHCCCEEEecCCcEEEEecC--CceEEEE
Confidence            4556778899999999999997554  3334443

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=82.52  E-value=2.9  Score=36.51  Aligned_cols=64  Identities=17%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHH
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~  146 (368)
                      +|+|=.+..|.+.+.+.-++.|-+|.+. .|.++..+.  ...+ +.++.+.+.+|.||+++++..-.
T Consensus        63 FPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~-l~td~~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   63 FPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFK-LWTDARPVTADAVILATGASAKR  126 (322)
T ss_pred             CCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeE-EEecCCceeeeeEEEecccceee
Confidence            5565223459999999999999999988 578888776  4343 55667789999999999986543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=82.16  E-value=53  Score=32.19  Aligned_cols=39  Identities=13%  Similarity=-0.054  Sum_probs=31.0

Q ss_pred             CCceEEeccccccCCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017658          288 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       288 ~~~L~laGd~~~~~~~~--~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      .+|+.++||..+.-.|.  .++.-|+.||..||+.|.+.+.
T Consensus       308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~  348 (450)
T PLN00093        308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE  348 (450)
T ss_pred             CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence            46899999987643332  6778899999999999998764

>TIGR03452 mycothione_red mycothione reductase

Probab=82.02  E-value=5.6  Score=38.98  Aligned_cols=55  Identities=20%  Similarity=0.249  Sum_probs=39.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+ +.|.++++++.|++|..++  +++. +.+. |+++++|.||++++...
T Consensus       210 ~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~p  265 (452)
T TIGR03452       210 EDISDRFTEIA-KKKWDIRLGRNVTAVEQDG--DGVT-LTLDDGSTVTADVLLVATGRVP  265 (452)
T ss_pred             HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC--CeEE-EEEcCCCEEEcCEEEEeeccCc
Confidence            34555555434 4689999999999998665  4443 4444 66899999999998653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=82.01  E-value=3  Score=38.58  Aligned_cols=60  Identities=15%  Similarity=0.170  Sum_probs=49.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---CeEEecCEEEEeeChhhHHHh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KETYSAGAVVLAVGISTLQEL  148 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~~~~ad~VV~a~p~~~l~~l  148 (368)
                      ++-+.|.+.+++.||.+..+-+|.+....+  |+|+.|-+.   +-.++||.+|+|.+.-.-+.|
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGL  321 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGL  321 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccc
Confidence            589999999999999999999999999988  888877665   225799999999887544433

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=81.79  E-value=2.6  Score=38.87  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHc------CCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017658           88 IFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        88 L~~~l~~~l~~~------G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~  144 (368)
                      ++.+|...+++.      -++|.++++|++|..++  |+|.+|..-   |+  .+.+|.||++++-..
T Consensus       141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence            777777666543      26899999999999655  889988752   44  578888888877654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=81.31  E-value=3.3  Score=39.73  Aligned_cols=47  Identities=13%  Similarity=0.217  Sum_probs=36.0

Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +.+.+.|+++++++.|+.|..++  ..|  +..+|+++.+|++|+|++...
T Consensus        66 ~~~~~~~i~~~~g~~V~~id~~~--~~v--~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         66 NWWQENNVHLHSGVTIKTLGRDT--REL--VLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             HHHHHCCCEEEcCCEEEEEECCC--CEE--EECCCCEEEcCEEEEccCCCC
Confidence            34567899999999999998765  432  223477899999999999863

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=81.26  E-value=4.5  Score=40.41  Aligned_cols=51  Identities=12%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             HHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhh
Q 017658           92 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        92 l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~  144 (368)
                      +.+.+++ +|++|++++.|++|.-++  +++.+|.+.    +  +++++|.||++++...
T Consensus       393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P  450 (515)
T TIGR03140       393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP  450 (515)
T ss_pred             HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence            4555665 599999999999997654  566666542    2  3689999999998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=81.22  E-value=5.3  Score=39.34  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=23.6

Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEE
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC  126 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~  126 (368)
                      +.+++.|+++++++.+++|..+++ |++++|.+
T Consensus       328 ~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~  359 (467)
T TIGR01318       328 ANAREEGVEFLFNVQPVYIECDED-GRVTGVGL  359 (467)
T ss_pred             HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEE
Confidence            446678999999999999976543 66766543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=81.06  E-value=53  Score=31.48  Aligned_cols=39  Identities=13%  Similarity=-0.016  Sum_probs=31.3

Q ss_pred             CCceEEeccccccCCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017658          288 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       288 ~~~L~laGd~~~~~~~~--~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      .+|+.++||.-+.-.|.  .++.-|+.||..||+.|.+.+.
T Consensus       269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~  309 (398)
T TIGR02028       269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR  309 (398)
T ss_pred             CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence            37899999988643332  6788899999999999998764

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=80.98  E-value=5.5  Score=40.38  Aligned_cols=52  Identities=23%  Similarity=0.167  Sum_probs=32.1

Q ss_pred             CCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccccccCCCCchhHHH
Q 017658          287 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEA  345 (368)
Q Consensus       287 ~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~~~~~~~  345 (368)
                      .++||||||+-.  |.  .+.+-|+.+|..|+-.+...+. +.+..+.+  .++.-+++
T Consensus       356 ~~~gLf~AGqi~--Gt--~Gy~eAaa~Gl~Ag~naa~~~~-~~~~~~l~--r~~~yiGv  407 (617)
T TIGR00136       356 LIQGLFFAGQIN--GT--TGYEEAAAQGLMAGINAALKLQ-NKEPFILK--RSEAYIGV  407 (617)
T ss_pred             CCCCeEEccccC--Cc--chHHHHHHHHHHHHHHHHHHhc-CCCCCCCC--cccchHhH
Confidence            479999999955  33  2456777888888766555544 24444444  33443444

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=80.76  E-value=4.2  Score=39.10  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--C--eEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VV~a~p~~~l  145 (368)
                      ..|.+.|.+.+.+. |++++.+++|++|..++  +.+. |++.  +  .+++||.||.|-+....
T Consensus       121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAAT-VTLEIEGKQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeE-EEEccCCcceEEeeeEEEEeCCCCch
Confidence            34777787777765 79999999999998766  4443 5543  3  36999999999887543

>PRK12831 putative oxidoreductase; Provisional

Probab=80.63  E-value=4.8  Score=39.61  Aligned_cols=31  Identities=16%  Similarity=0.242  Sum_probs=22.7

Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEE
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC  126 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~  126 (368)
                      .+++.|++|++++.+++|..+++ |+|++|.+
T Consensus       327 ~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~  357 (464)
T PRK12831        327 HAKEEGVIFDLLTNPVEILGDEN-GWVKGMKC  357 (464)
T ss_pred             HHHHcCCEEEecccceEEEecCC-CeEEEEEE
Confidence            35667999999999999976543 66766543

>PRK11445 putative oxidoreductase; Provisional

Probab=80.62  E-value=51  Score=30.94  Aligned_cols=54  Identities=11%  Similarity=-0.041  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--CCe--EEecCEEEEeeChhhH
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL  145 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~a~p~~~l  145 (368)
                      +-+.|.+. ...|++++.++.|++|..++  +.+. |+.  +|+  +++||.||.|.+....
T Consensus       101 ~~~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445        101 FDLWLKSL-IPASVEVYHNSLCRKIWRED--DGYH-VIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             HHHHHHHH-HhcCCEEEcCCEEEEEEEcC--CEEE-EEEecCCcEEEEEeCEEEECCCCCcH
Confidence            33444443 34689999999999998766  3343 443  353  6899999999998643

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=80.05  E-value=5.6  Score=38.78  Aligned_cols=53  Identities=11%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.+.+.+.+++.|++++++++|++|.  +  ..   |.+ +|+++++|.||++++...
T Consensus       188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~--~~---v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        188 DADMNQPILDELDKREIPYRLNEEIDAIN--G--NE---VTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             CHHHHHHHHHHHHhcCCEEEECCeEEEEe--C--CE---EEECCCCEEEeCEEEECcCCCc
Confidence            34577788888999999999999999995  2  32   333 467899999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	1e-11
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	3e-11
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	4e-08
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	3e-06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	3e-06
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	3e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	3e-05
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	8e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	3e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	5e-04
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	7e-04
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	8e-04

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 56/356 (15%), Positives = 118/356 (33%), Gaps = 57/356 (16%)

Query: 5   IDFDNTDVAWRKYDSITARELFK-QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI 63
              D    A +  D  +  E F+ + G  + +  N+I PL+        ++ S  +T   
Sbjct: 135 AAMDFILPASKTKDDQSLGEFFRRRVG--DEVVENLIEPLLSGIYAGDIDKLSLMSTFPQ 192

Query: 64  LY-------FIILAHQKNFDLVWCRGTLREKI-----FEPWMDSMRTRGCEFLD------ 105
            Y        +IL  +K       +    +K          + ++     + L       
Sbjct: 193 FYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYK 252

Query: 106 GRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 165
           G +VT   +      +   +    T  A +V++         ++           LK ++
Sbjct: 253 GTKVTKLSHSGSCYSL--ELDNGVTLDADSVIVTAPHKAAAGMLSELPA---ISHLKNMH 307

Query: 166 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDS---------LAWTFFDLNKIYDEHKDDS 216
             S+  V+  L F +     +V     G G            A T+   NK +     + 
Sbjct: 308 STSVANVA--LGFPE----GSVQMEHEGTGFVISRNSDFAITACTWT--NKKWPHAAPEG 359

Query: 217 ATVIQADFYHAN--ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF 274
            T+++A    A    ++ L D+ ++   +  L K +            + R+ +S+  + 
Sbjct: 360 KTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNI--NGEPEMTCVTRWHESMPQYH 417

Query: 275 PGSYKYMMRGF-----TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 325
            G +K  ++       +++P ++M G       G          G  A +  + YL
Sbjct: 418 VG-HKQRIKELREALASAYPGVYMTGAS---FEGV-GIPDCIDQGKAAVSDALTYL 468

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 63.3 bits (153), Expect = 3e-11
 Identities = 35/322 (10%), Positives = 90/322 (27%), Gaps = 30/322 (9%)

Query: 27  KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVW------- 79
           +QFG  E +    + P        P    S       +  + L   +             
Sbjct: 145 RQFG--EGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWG 202

Query: 80  -------CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYS 132
                   +      I++   + + +    F  G +      D +    S+     E  S
Sbjct: 203 PNATFRFPQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTITFSN----GEVVS 258

Query: 133 AGAVVLAVGISTLQELIKNSILCNREEFLKVLN-LASIDVVSVKLWFDKKVTVPNVSNAC 191
              ++  V    L  + K +     +E+  + + +       + +           +   
Sbjct: 259 YDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACW 318

Query: 192 SGFGDS----LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLS 247
             F +        T F  +     +  +    +  +   + +  P+    ++   +    
Sbjct: 319 LYFPEDTSPFYRATVF--SNYSKYNVPEGHWSLMLEVSES-KYKPVNHSTLIEDCIVGCL 375

Query: 248 KCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM--MRGFTSFPNLFMAGDWITTRHGSW 305
                     ++     R  K     F G    +   +       ++  G +   R+   
Sbjct: 376 ASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSRCIYSRGRFGAWRYEVG 435

Query: 306 SQERSYVTGLEAANRVVDYLGD 327
           +Q+ S++ G+EA + V+    +
Sbjct: 436 NQDHSFMQGVEAIDHVLGLATE 457

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 48/326 (14%), Positives = 87/326 (26%), Gaps = 44/326 (13%)

Query: 33  ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH-------------QKNFDLVW 79
            R  + ++  +         EQ S AAT  +L  +   H             Q+   L  
Sbjct: 161 HRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPA 220

Query: 80  CRGTLREKIFEPWMDSMRT--------RGCEFLDGRRVTDFIYDEERCCIS-DVVCGKET 130
                       +   ++          G     G RV     ++    +  +    +  
Sbjct: 221 GTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAE 280

Query: 131 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 190
            S   VVLA       +L++  +       +  +  A I VV   L FD           
Sbjct: 281 LSVAQVVLAAPAHATAKLLRP-LDDALAALVAGIAYAPIAVVH--LGFDAGTLPAP---D 334

Query: 191 CSGFGDSLAWTFFDLNKIYDEHK-----DDSATVIQADF--YHANELMPLKDDQVVAKAV 243
             GF          L  I+         +    +            L+   +D + A A 
Sbjct: 335 GFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAR 394

Query: 244 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM---MRGFTSFPNLFMAGDWITT 300
             L        TA     ++ R+P  +  +  G  + +          P L + G+    
Sbjct: 395 EELKALAGV--TARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNA--- 449

Query: 301 RHGSWSQERSYVTGLEAANRVVDYLG 326
             G            + A+ +V    
Sbjct: 450 YKGV-GLNDCIRNAAQLADALVAGNT 474

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 51/368 (13%), Positives = 111/368 (30%), Gaps = 51/368 (13%)

Query: 6   DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILY 65
           D         ++D++T +EL  +   +E   + +    V + + A   + SA   L  L+
Sbjct: 132 DAPWKAPLAEEWDNMTMKELLDKLCWTE-SAKQLATLFVNLCVTAETHEVSA---LWFLW 187

Query: 66  FIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR-----RVTDFIYDEERCC 120
           ++         ++      +E+ F      +  R  + L  R      V       E   
Sbjct: 188 YVKQCGG-TTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVL 246

Query: 121 ISDVVCGKETYSAGAVVLAVGISTLQEL-IKNSILCNREEFLKVLNLASIDVVSVKLWFD 179
           +       E Y A  V+ A+  +   ++     +   R + +  + L S  V+   +++ 
Sbjct: 247 V--ETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGS--VIKCIVYYK 302

Query: 180 KKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKDD 236
           +                  A   + L    D   + +   I   F     A +L  L  +
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTL---DDTKPEGNYAAIMG-FILAHKARKLARLTKE 358

Query: 237 QVVAKAVSYLSKCIKDFSTATVMDHKIRRF---PKSLTHFFPGSYKYMMRG--------- 284
           + + K     +K +        + ++ + +         +  G Y               
Sbjct: 359 ERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQ-----YSGGCYTTYFPPGILTQYGRV 413

Query: 285 -FTSFPNLFMAG-----DWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEE 338
                  ++ AG      W     G      +   G  AA  ++  +G     +I   E 
Sbjct: 414 LRQPVDRIYFAGTETATHWSGYMEG------AVEAGERAAREILHAMGKIPEDEIWQSEP 467

Query: 339 DEPHIEAL 346
           +   + A 
Sbjct: 468 ESVDVPAQ 475

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 44/385 (11%), Positives = 104/385 (27%), Gaps = 47/385 (12%)

Query: 14  WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH-- 71
                  T  E   +      +    + P        P  +   A     +    L    
Sbjct: 137 VANTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVT 195

Query: 72  ---------QKNFDLVWCRGTLR---EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC 119
                             R   R     I+    +++      F +  +VT    + +  
Sbjct: 196 TNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTV 255

Query: 120 CISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFD 179
            + D      T     +V  + +  L E + +          K L  +S  V+ V +   
Sbjct: 256 TLQD----GTTIGYKKLVSTMAVDFLAEAMND---QELVGLTKQLFYSSTHVIGVGVRGS 308

Query: 180 KKVTVPNVS-----------------------NACSGFGDSLAWTFFDLNKIYDEHKDDS 216
           +   + +                         N              D ++       + 
Sbjct: 309 RPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEG 368

Query: 217 ATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPG 276
                      + + P+  + ++A  +  L        T  ++    RRF          
Sbjct: 369 PYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLE 428

Query: 277 SYKYM--MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKII 334
               +  +       +++  G + + R+   +Q+ S++ G+EA + +V+   + + +   
Sbjct: 429 REGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVNGAVELTLNYPD 488

Query: 335 PVEEDEPHIEALRTVNRRFNEIRAQ 359
            V   +     L    + F + +AQ
Sbjct: 489 FVNGRQNTERRLVDGAQVFAKSKAQ 513

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 47/366 (12%), Positives = 96/366 (26%), Gaps = 56/366 (15%)

Query: 11  DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILY----- 65
            ++       +    F++    + +   +I P V        +  S   +   L+     
Sbjct: 141 KLSQVSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKR 199

Query: 66  --------FIILAHQKNFDLVWCRGTLREKIFEPWMDSMRT-------------RGCEFL 104
                          KN        T   K  +    S                R  E  
Sbjct: 200 FGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELR 259

Query: 105 DGRRVTDFIYDEERCCISDV---------VCGKETYSAGAVVLAVGISTLQELIKNSILC 155
              RV +           D              E  S  AV++   +  ++ +       
Sbjct: 260 LNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRG- 318

Query: 156 NREEFLKVLNLASIDVVSVKLWFDKKVTVPN-------VSNACSGFGDSLAWTFFDLNKI 208
           N      +  +  + +  V   F ++            V +     G     T F  + +
Sbjct: 319 NPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFS-SMM 377

Query: 209 YDEHKDDSATVIQADF--YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF 266
           + +   ++  +           EL      ++     S L + +               +
Sbjct: 378 FPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGA--EGEPTYVNHLYW 435

Query: 267 PKSLTHFFPGSYKYM---MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323
            K+   +       +    +   + P LF AG+    R G  S  ++  +G  AA+ V+ 
Sbjct: 436 SKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNH---RGGL-SVGKALSSGCNAADLVIS 491

Query: 324 YLGDGS 329
           YL   S
Sbjct: 492 YLESVS 497

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 42/344 (12%), Positives = 88/344 (25%), Gaps = 46/344 (13%)

Query: 14  WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILY-------- 65
                 I   E  +       L   +I PL+        +Q S  AT             
Sbjct: 142 RIPEQDIPLGEYLRPRLGDA-LVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGS 200

Query: 66  ----FIILAHQKNFDLVWCRGTLREKIFEPWMDSMRT---------RGCEFLDGRRVTDF 112
                 ++                   F      + +            E      +   
Sbjct: 201 LFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAI 260

Query: 113 IYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVV 172
             ++ R     +        A  V+L +    + +L+ ++ L      L+   L +    
Sbjct: 261 SREDGRYR---LKTDHGPEYADYVLLTIPHPQVVQLLPDAHL----PELE--QLTTHSTA 311

Query: 173 SVKLWFDKKVTVP-NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHA--NE 229
           +V + FD++ ++P   +          + T          H     TV++A       + 
Sbjct: 312 TVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDH 371

Query: 230 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---- 285
           L+   D+ +    +  L K      T       I R    L  +  G +   ++      
Sbjct: 372 LVHESDEVLQQAVLQDLEKICGR--TLEPKQVIISRLMDGLPAYTVG-HADRIQRVREEV 428

Query: 286 -TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 328
              +P +++AG       G         +       +       
Sbjct: 429 LAQYPGIYLAGLA---YDGV-GLPDCVASAKTMIESIELEQSHT 468

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 42/340 (12%), Positives = 94/340 (27%), Gaps = 58/340 (17%)

Query: 15  RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN 74
           R  D+++ ++             N+   +    L  PA   SA   L  +     A   +
Sbjct: 141 RDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSA---LQAVLMA--ASAGS 195

Query: 75  FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR-----RVTDFIYDEERCCISDVVCGKE 129
           F  +     + +K     M  +  R  E L         V    ++E    +  +  G  
Sbjct: 196 FSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATV--LADGDI 253

Query: 130 TYSAGAVVLAVGISTLQEL-IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS 188
              A  V+LAV  +    +     +   + +  +  +L    V+ V   ++      +  
Sbjct: 254 RVEASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGL--VIKVHAVYETPFWREDGL 311

Query: 189 NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYL 246
           +        +    +D     + + +D    + A      A+ +  L  ++  A  ++ L
Sbjct: 312 SGTGFGASEVVQEVYD-----NTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASL 366

Query: 247 SKCIKDFSTATVMDHKIRRFPKSLTH------FFPGSYKYMMR--GFTSF--------PN 290
           ++ +           K                +  G Y       G   +          
Sbjct: 367 ARYLGP---------KAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGP 417

Query: 291 LFMAGDWITTRHGSWSQERSYV-----TGLEAANRVVDYL 325
           +  +   I            +V      G   A  ++   
Sbjct: 418 IHFSCSDIAAEG------YQHVDGAVRMGQRTAADIIARS 451

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 45/362 (12%), Positives = 102/362 (28%), Gaps = 54/362 (14%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGC----------SERLYRNVIGPLVQVGLFA 50
           +    D    D    + D     E    FG           S R Y +  G  +  G   
Sbjct: 143 LKKATDQGALDQVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEK 202

Query: 51  PAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLD----- 105
                      GI          +  ++              MD +     + +      
Sbjct: 203 KPFAMQEVIRSGIGRNFSFDFGYDQAMMMFT-------PVGGMDRIYYAFQDRIGTDNIV 255

Query: 106 -GRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 163
            G  VT      E   +     G  ++ +A   +  +    +   ++N++  +    LK 
Sbjct: 256 FGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGR-LQNNLPGDVLTALKA 314

Query: 164 LNLASIDVVSVKLWFDKK--VTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQ 221
              +S     + + + ++   T   +    S     ++   F     YD +  D   V+ 
Sbjct: 315 AKPSS--SGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFP----YDHYNSDRGVVVA 368

Query: 222 ADFY----HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK------SLT 271
             +Y           L   Q +AKA++  S+   +  T  +       + +      +  
Sbjct: 369 --YYSSGKRQEAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWA 426

Query: 272 HFFPGSYKYMMRGFTSFP-------NLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324
           ++      +       +         ++ AGD ++     W Q  +  +  +    + + 
Sbjct: 427 NWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLSNAIA-W-QHGALTSARDVVTHIHER 484

Query: 325 LG 326
           + 
Sbjct: 485 VA 486

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 181

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 16/130 (12%)

Query: 209 YDEHKDDSATVIQADFY----HANELMPLKDDQVVAKAVSYLSKC----IKDFSTATVMD 260
           +         V+ A  Y     A       D +    A+  L       I+ F T     
Sbjct: 28  HPVPGTQGGVVLAA--YSWSDDAARWDSFDDAERYGYALENLQSVHGRRIEVFYTGAGQT 85

Query: 261 HKIRRFPKSL---THFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLE 316
               R P +      + P                ++ AG+ ++ +H  W  E +  T + 
Sbjct: 86  QSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHA-W-IEGAVETAVR 143

Query: 317 AANRVVDYLG 326
           AA  V +   
Sbjct: 144 AAIAVNEAPV 153

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 42/275 (15%), Positives = 86/275 (31%), Gaps = 55/275 (20%)

Query: 106 GRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGISTLQELIKNSIL------C 155
              V    Y    C +  V          Y   AV+  + +  L++    ++        
Sbjct: 587 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQ-QPPAVQFVPPLPE 645

Query: 156 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDD 215
            +   ++ +   +++   V L FD+    P+V          +  T     +++      
Sbjct: 646 WKTSAVQRMGFGNLN--KVVLCFDRVFWDPSV-----NLFGHVGSTTASRGELFLFWNLY 698

Query: 216 SATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF 273
            A ++ A      A  +  + DD +V + ++ L       +     +  + R+      +
Sbjct: 699 KAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRW--RADPW 756

Query: 274 FPGSYKYMMRGFT----------------------SFPNLFMAG-----DWITTRHGSWS 306
             GSY Y+  G +                        P LF AG     ++  T HG+  
Sbjct: 757 ARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGA-- 814

Query: 307 QERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEP 341
                ++GL  A R+ D      ++         P
Sbjct: 815 ----LLSGLREAGRIADQFLGAMYTLPRQATPGVP 845

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 51/335 (15%), Positives = 94/335 (28%), Gaps = 48/335 (14%)

Query: 13  AWRKYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH 71
            +RKYD ++  E   Q         R+ +   + +      E  S         F+    
Sbjct: 179 EFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSF------GEFLHWWA 232

Query: 72  QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR---------RVTDFIYDEERCCIS 122
              +    C   L    F+    +   R  E   G           V   + + +   + 
Sbjct: 233 MSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARV- 291

Query: 123 DVVCGKETYSAGAVVLAVGISTLQELIKNSIL-CNREEFLKVLNLASIDVVSVKLWFDKK 181
                   + A  VV  + ++ L  +  +  L   R   ++  +++      V    D K
Sbjct: 292 -TARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSM--CTKVHAEVDNK 348

Query: 182 VTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAK 241
                     +G         +    I D       T +      AN + P +D +   K
Sbjct: 349 DMRS-----WTGIAYPFNKLCYA---IGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLK 400

Query: 242 AVSYLSKCIKDFSTATVMD-HKIRRFPKSLTHFFPGSYKYMMRGFTS---------FPNL 291
           AV  L+            +  K          F  G++ +   G  S            +
Sbjct: 401 AVGQLAPGTFGVKRLVFHNWVKDE--------FAKGAWFFSRPGMVSECLQGLREKHGGV 452

Query: 292 FMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326
             A         S+  + +   G  AA  V++ LG
Sbjct: 453 VFANSDWALGWRSF-IDGAIEEGTRAARVVLEELG 486

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 45/342 (13%), Positives = 97/342 (28%), Gaps = 54/342 (15%)

Query: 13  AWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ 72
                + I A E  K+         +V+               +A      L   I A  
Sbjct: 121 NKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTAL----ELAKEIRAAL 176

Query: 73  KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETY 131
           +       RG   + + +     +     + L  + V +   +E++     V     E Y
Sbjct: 177 RWGGPGLIRGGC-KAVIDELERIIMENKGKILTRKEVVEINIEEKK-----VYTRDNEEY 230

Query: 132 SAGAVVLAVGISTLQELIKNSILCNREEFLKVLN-LASIDVVSVKLWFDKKVTVPNVSNA 190
           S    +  VG+    +LI         ++LK ++ +   + +   L    +  + N    
Sbjct: 231 SFDVAISNVGVRETVKLIGRDYF--DRDYLKQVDSIEPSEGIKFNLAVPGEPRIGN---- 284

Query: 191 CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD---------FYHANELMPLKD-DQVVA 240
                       F    + +   + SA     D            A+  +   +  + + 
Sbjct: 285 ---------TIVFTPGLMINGFNEPSAL----DKSLAREGYTLIMAHMALKNGNVKKAIE 331

Query: 241 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT 300
           K    L +   +        ++    P  +     G     +        + + GD    
Sbjct: 332 KGWEELLEIFPEGEPLLAQVYR-DGNP--VNRTRAG-----LHIEWPLNEVLVVGDG-YR 382

Query: 301 RHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPH 342
             G    +   +  +    + ++ L  GSFS+   +E    H
Sbjct: 383 PPGGIEVDGIALGVM----KALEKLNLGSFSEWYLLEHHHHH 420

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 52/339 (15%), Positives = 110/339 (32%), Gaps = 48/339 (14%)

Query: 5   IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL 64
           +   N      KYD+ + +E   + G       ++IG      L         +    + 
Sbjct: 168 LKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIG-----DLLNEDSGYYVSFIESLK 222

Query: 65  YFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGR-----RVTDFIYDEERC 119
           +  I A++K FD +              MD + T     +  +     +V     ++++ 
Sbjct: 223 HDDIFAYEKRFDEI--VD---------GMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKV 271

Query: 120 CISDVVCGK--ETYSAGAVVLAVGISTLQELIKNSIL-CNREEFLKVLNLASIDVVSVKL 176
            +      K   + +A  V++      ++ +  N  L   +   L+ ++  S     + L
Sbjct: 272 TVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRS--GTKIFL 329

Query: 177 WFDKKV-TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADF---YHANELMP 232
               K      +    S       + ++      + +  +   VI A +     AN    
Sbjct: 330 TCTTKFWEDDGIHGGKSTTDLPSRFIYYP-----NHNFTNGVGVIIA-YGIGDDANFFQA 383

Query: 233 LKDDQVVAKAVSYLSK---CIKDFSTATVMDHKIRRFPK------SLTHFFPGSYKYMMR 283
           L          + LS      K    +      I+++         +T F P  +++   
Sbjct: 384 LDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSD 443

Query: 284 G-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 321
               S   ++ AG++    HG W  + +  +GL AA  V
Sbjct: 444 PLTASQGRIYFAGEYTAQAHG-W-IDSTIKSGLRAARDV 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.97
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.95
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.95
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.93
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.93
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.93
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.92
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.91
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.91
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.9
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.89
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.88
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.85
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.83
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.83
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.83
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.82
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.81
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.8
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.79
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.74
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.72
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.71
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.67
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.54
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.37
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.3
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.24
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.22
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.15
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.14
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.12
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.79
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.76
3dme_A	369	Conserved exported protein; structural genomics, P	98.27
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.25
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.22
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.22
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.2
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.07
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.01
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.92
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.9
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.89
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.84
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.78
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.69
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.68
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.51
3atr_A	453	Conserved archaeal protein; saturating double bond	97.5
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.49
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.45
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.32
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.28
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.27
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.01
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	96.91
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.73
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.68
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	96.56
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	96.52
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.5
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.5
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.5
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	96.45
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.31
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.28
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.22
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.12
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.11
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.03
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	95.88
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	95.83
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.55
2cul_A	232	Glucose-inhibited division protein A-related PROT	95.48
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	95.42
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.42
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	95.32
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.29
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.2
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	95.16
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.16
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.98
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	94.89
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.88
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	94.84
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	94.84
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.79
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.78
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	94.77
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.74
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	94.69
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	94.68
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.66
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	94.66
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	94.66
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	94.52
4dna_A	463	Probable glutathione reductase; structural genomic	94.47
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	94.44
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.43
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.42
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.4
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.34
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.29
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	94.26
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.2
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	94.16
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.05
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	93.92
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	93.81
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	93.75
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	93.74
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	93.42
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	93.39
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.35
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	93.32
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.29
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.23
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	93.17
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	93.05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.05
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.0
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	92.95
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.91
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	92.87
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	92.78
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	92.74
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	92.69
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.65
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	92.5
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	92.43
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.37
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	92.32
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.22
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	92.22
1ojt_A	482	Surface protein; redox-active center, glycolysis,	92.17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	92.12
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	91.95
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.84
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	91.81
2bry_A	497	NEDD9 interacting protein with calponin homology a	91.8
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	91.74
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	91.69
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	91.65
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	91.65
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	91.33
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	91.24
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	91.23
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	91.14
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	91.01
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	90.81
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	90.77
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	90.59
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	90.37
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	90.35
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	90.17
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.12
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	90.05
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	89.96
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	89.92
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	89.81
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	89.74
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	89.5
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	89.5
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	89.46
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	89.3
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	88.98
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	88.94
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	88.61
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	88.47
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	88.41
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	88.39
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	88.37
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	88.26
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	88.21
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	88.07
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	88.03
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	87.68
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	87.35
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	87.27
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	87.24
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	87.03
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	86.86
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	86.78
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	86.54
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	86.5
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	86.3
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	86.29
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	86.28
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	85.5
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	84.98
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	84.77
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	84.7
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	84.67
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	84.56
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	84.5
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	84.29
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	84.23
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	83.52
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	82.86
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	82.83
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	82.43
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	82.25
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	81.65
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	81.62
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	81.38
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	80.72
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	80.25
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	80.05

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.97  E-value=9.6e-29  Score=237.91  Aligned_cols=290  Identities=12%  Similarity=0.081  Sum_probs=219.1

Q ss_pred             cCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHHHH
Q 017658           18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMR   97 (368)
Q Consensus        18 d~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~l~   97 (368)
                      +++|+.+|+++. ++++..+.++++++...++.+++++|+..+...+......    ....+++||+ ..|+++|++.++
T Consensus       134 ~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~gG~-~~l~~~l~~~~~  207 (425)
T 3ka7_A          134 SGSSLQAWIKSQ-VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRF----GGTGIPEGGC-KGIIDALETVIS  207 (425)
T ss_dssp             CSSBHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHH----CSCEEETTSH-HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHh-cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhc----CCccccCCCH-HHHHHHHHHHHH
Confidence            679999999985 5677788899999988899999999998888777664322    1235789996 679999999999


Q ss_pred             HcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhcc-cc-CchhHHhhhccCccceEEEE
Q 017658           98 TRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSI-LC-NREEFLKVLNLASIDVVSVK  175 (368)
Q Consensus        98 ~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~-l~-~~~~~~~i~~l~~~~~~~v~  175 (368)
                      ++|++|+++++|++|..++  +++++|+++|++++||.||+|+|++.+.+|+++.. ++ +..+.+++..+.+.+.++++
T Consensus       208 ~~G~~i~~~~~V~~i~~~~--~~~~gv~~~g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~  285 (425)
T 3ka7_A          208 ANGGKIHTGQEVSKILIEN--GKAAGIIADDRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKIC  285 (425)
T ss_dssp             HTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEE
T ss_pred             HcCCEEEECCceeEEEEEC--CEEEEEEECCEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEE
Confidence            9999999999999999887  77888988888999999999999999999987532 10 24556778888888888899


Q ss_pred             EEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhccCCCC
Q 017658          176 LWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFST  255 (368)
Q Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~  255 (368)
                      ++++++.. . .+..+++.+......+...+...+...+++++++.++.+......+. .++.++.++++|++++|+.. 
T Consensus       286 l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~p~~~-  361 (425)
T 3ka7_A          286 LAADEPLV-G-HTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKN-LESEIEMGLEDLKEIFPGKR-  361 (425)
T ss_dssp             EEESSCSS-C-SSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGG-HHHHHHHHHHHHHHHSTTCC-
T ss_pred             eecCCCcc-C-cCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccccccc-hHHHHHHHHHHHHHhCCCCc-
Confidence            99998754 2 33444433221111233445555666656777776654432221122 34567999999999999843 


Q ss_pred             CceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017658          256 ATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  323 (368)
Q Consensus       256 ~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~  323 (368)
                      .+++  .+.+|+.++|.+.++. ..+|...+|++|||+||||+.+.+| .+|++|+.||+.||++|+.
T Consensus       362 ~~~~--~v~~~~~~~P~~~~~~-~~~~~~~~p~~gL~laG~~~~~~gg-~gv~~~~~s~~~~~~~i~~  425 (425)
T 3ka7_A          362 YEVL--LIQSYHDEWPVNRAAS-GTDPGNETPFSGLYVVGDGAKGKGG-IEVEGVALGVMSVMEKVLG  425 (425)
T ss_dssp             EEEE--EEEEEBTTBCSBSSCT-TCCCCSBCSSBTEEECSTTSCCTTC-CHHHHHHHHHHHHHHC---
T ss_pred             eEEE--EEEEECCCcccccccc-CCCCCCCCCcCCeEEeCCccCCCCC-CccHHHHHHHHHHHHHhhC
Confidence            2343  5677999999998884 4567888999999999999997677 6999999999999999873

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.95  E-value=3.7e-26  Score=225.73  Aligned_cols=309  Identities=17%  Similarity=0.133  Sum_probs=216.3

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH-----HhhcCCCcceeeecCCcchhhhH
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----ILAHQKNFDLVWCRGTLREKIFE   90 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~-----~~~~~~~~~~~~~~GG~~~~L~~   90 (368)
                      .++++|+.+|+++.+.++. .+.++++++...++.+++++|+..++..+...     +.....+....+++||+ ..|++
T Consensus       142 ~~~~~s~~~~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~-~~l~~  219 (520)
T 1s3e_A          142 EWDNMTMKELLDKLCWTES-AKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGS-GQVSE  219 (520)
T ss_dssp             HHHTSBHHHHHHHHCSSHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCT-HHHHH
T ss_pred             hhhccCHHHHHHhhCCCHH-HHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCH-HHHHH
Confidence            4789999999999777665 57899999989999999999998876554321     01111122335678996 57999


Q ss_pred             HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCcc
Q 017658           91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI  169 (368)
Q Consensus        91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~  169 (368)
                      +|++.+   |++|++|++|++|..++  ++++ |.+. |++++||+||+|+|+..+.+++.++.++ ....+.++.+.+.
T Consensus       220 ~l~~~l---g~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp-~~~~~~i~~~~~~  292 (520)
T 1s3e_A          220 RIMDLL---GDRVKLERPVIYIDQTR--ENVL-VETLNHEMYEAKYVISAIPPTLGMKIHFNPPLP-MMRNQMITRVPLG  292 (520)
T ss_dssp             HHHHHH---GGGEESSCCEEEEECSS--SSEE-EEETTSCEEEESEEEECSCGGGGGGSEEESCCC-HHHHHHTTSCCBC
T ss_pred             HHHHHc---CCcEEcCCeeEEEEECC--CeEE-EEECCCeEEEeCEEEECCCHHHHcceeeCCCCC-HHHHHHHHhCCCc
Confidence            998765   78999999999999876  5565 6665 6789999999999999998887554442 4456778888888


Q ss_pred             ceEEEEEEecCCCCCCCCCce-ee--cCCCCccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHH
Q 017658          170 DVVSVKLWFDKKVTVPNVSNA-CS--GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVS  244 (368)
Q Consensus       170 ~~~~v~l~~~~~~~~~~~~~~-~~--~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~  244 (368)
                      +..++++.+++++|....... .+  ..+....+ ++|.+.     .+.+..++.....  .+..|.+++++++++.+++
T Consensus       293 ~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~-~~d~~~-----~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~  366 (520)
T 1s3e_A          293 SVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAY-TLDDTK-----PEGNYAAIMGFILAHKARKLARLTKEERLKKLCE  366 (520)
T ss_dssp             CEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSE-EEECCC-----TTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHH
T ss_pred             ceEEEEEEeCCCcccCCCCCceeeccCCCCceEE-EeeCCC-----CCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHH
Confidence            899999999998774332111 11  11112222 344331     1112244433222  1234677889999999999


Q ss_pred             HHhhhccCCCCCceeeeEEeecCCCc------c-ccCCCCcC-CCCCCCCCCCceEEeccccccCCCCccchHHhHHHHH
Q 017658          245 YLSKCIKDFSTATVMDHKIRRFPKSL------T-HFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE  316 (368)
Q Consensus       245 ~l~~~~p~~~~~~i~~~~~~~~~~~~------~-~~~pg~~~-~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~  316 (368)
                      +|+++||......+......+|..+.      . .+.||... .++...+|++||||||++++..++ ++|+||+.||.+
T Consensus       367 ~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~-g~v~GAi~SG~~  445 (520)
T 1s3e_A          367 LYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWS-GYMEGAVEAGER  445 (520)
T ss_dssp             HHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSST-TSHHHHHHHHHH
T ss_pred             HHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCc-EEhHHHHHHHHH
Confidence            99999985311245555666674321      1 23444321 234456788999999999987677 699999999999


Q ss_pred             HHHHHHHHhCCCCccccccCCCCc
Q 017658          317 AANRVVDYLGDGSFSKIIPVEEDE  340 (368)
Q Consensus       317 aA~~Il~~~~~~~~~~~~~~~~~~  340 (368)
                      ||++|++.++..++..+|..++++
T Consensus       446 aA~~i~~~l~~~~~~~~~~~~~~~  469 (520)
T 1s3e_A          446 AAREILHAMGKIPEDEIWQSEPES  469 (520)
T ss_dssp             HHHHHHHHTTSSCGGGSSCCCCCC
T ss_pred             HHHHHHHHHhcCccccccccCCcc
Confidence            999999999887778888877655

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.95  E-value=7.9e-25  Score=210.50  Aligned_cols=285  Identities=13%  Similarity=0.079  Sum_probs=200.6

Q ss_pred             cCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHHHH
Q 017658           18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMR   97 (368)
Q Consensus        18 d~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~l~   97 (368)
                      +++|+.+|+++.+++++..+.++.+++...++.+++++|+..+...+......    ....+++||+ ..|+++|++.++
T Consensus       126 ~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~gG~-~~l~~~l~~~~~  200 (421)
T 3nrn_A          126 EEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRW----GGPGLIRGGC-KAVIDELERIIM  200 (421)
T ss_dssp             CCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHH----CSCEEETTCH-HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhc----CCcceecCCH-HHHHHHHHHHHH
Confidence            45899999998768888888899999999999999999998888777655321    1235789995 679999999999


Q ss_pred             HcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEEEEEE
Q 017658           98 TRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLW  177 (368)
Q Consensus        98 ~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~  177 (368)
                      ++|++|+++++|++|..++  +++  |..+|++++||.||+|+|++.+.+|++...++ ..+.+++..+.+.+.+++++.
T Consensus       201 ~~G~~i~~~~~V~~i~~~~--~~v--V~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~v~l~  275 (421)
T 3nrn_A          201 ENKGKILTRKEVVEINIEE--KKV--YTRDNEEYSFDVAISNVGVRETVKLIGRDYFD-RDYLKQVDSIEPSEGIKFNLA  275 (421)
T ss_dssp             TTTCEEESSCCEEEEETTT--TEE--EETTCCEEECSEEEECSCHHHHHHHHCGGGSC-HHHHHHHHTCCCCCEEEEEEE
T ss_pred             HCCCEEEcCCeEEEEEEEC--CEE--EEeCCcEEEeCEEEECCCHHHHHHhcCcccCC-HHHHHHHhCCCCCceEEEEEE
Confidence            9999999999999999876  666  66678899999999999999999998743332 345667788888888899999


Q ss_pred             ecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhccCCCCCc
Q 017658          178 FDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTAT  257 (368)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~  257 (368)
                      ++++.. . .++.+++.+... ..+...++..+...+++++++.+..+..    +.+.++.++.++++|++++|  . .+
T Consensus       276 ~~~~~~-~-~~~~~~~~~~~~-~~i~~~s~~~p~~ap~G~~~~~~~~~~~----~~~~~~~~~~~~~~L~~~~p--~-~~  345 (421)
T 3nrn_A          276 VPGEPR-I-GNTIVFTPGLMI-NGFNEPSALDKSLAREGYTLIMAHMALK----NGNVKKAIEKGWEELLEIFP--E-GE  345 (421)
T ss_dssp             EESSCS-S-CSSEEECTTSSS-CEEECGGGTCGGGSCTTEEEEEEEEECT----TCCHHHHHHHHHHHHHHHCT--T-CE
T ss_pred             EcCCcc-c-CCeEEEcCCcce-eeEeccCCCCCCcCCCCceEEEEEEeec----cccHHHHHHHHHHHHHHHcC--C-Ce
Confidence            988743 2 334444433221 1223334444444545566665544421    22344668999999999999  2 24


Q ss_pred             eeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccc
Q 017658          258 VMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSK  332 (368)
Q Consensus       258 i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~  332 (368)
                      ++  .+.+|+.+++.+.+..... +. .++ +|||+|||++.+.++ .+||||+.||+.||++|    +.++..+
T Consensus       346 ~~--~~~~~~~~~p~~~~~~~~~-~~-~~~-~gl~laGd~~~~~~g-~~~~ga~~sg~~aA~~l----~~~~~~~  410 (421)
T 3nrn_A          346 PL--LAQVYRDGNPVNRTRAGLH-IE-WPL-NEVLVVGDGYRPPGG-IEVDGIALGVMKALEKL----NLGSFSE  410 (421)
T ss_dssp             EE--EEEEC-------------C-CC-CCC-SSEEECSTTCCCTTC-CHHHHHHHHHHHHHHHT----TSCCCCT
T ss_pred             EE--EeeeccCCCCcccccCCCC-CC-CCC-CcEEEECCcccCCCc-eeeehHHHHHHHHHHHh----CcCchhh
Confidence            44  3455777777664322112 22 677 999999999986444 46799999999999999    4446654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.93  E-value=4.2e-25  Score=214.31  Aligned_cols=294  Identities=13%  Similarity=0.110  Sum_probs=201.0

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCch-hhhHHHHHHHHHHH-----HhhcCCCcceeeecCCcchhh
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFI-----ILAHQKNFDLVWCRGTLREKI   88 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~~~~~l~~~-----~~~~~~~~~~~~~~GG~~~~L   88 (368)
                      ..++++|+.+|+++.+.++. .+.++++++...++.+++ ++|+..++..+...     ++. ..+....++.||+ ..|
T Consensus       141 ~~~~~~s~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~gG~-~~l  217 (453)
T 2yg5_A          141 RDLDTVSFKQWLINQSDDAE-ARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD-EDFILDKRVIGGM-QQV  217 (453)
T ss_dssp             HHHHSSBHHHHHHHHCSCHH-HHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHC-HHHHTCEEETTCT-HHH
T ss_pred             hhhhhccHHHHHHhhcCCHH-HHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhcc-CCCcceEEEcCCh-HHH
Confidence            45789999999999877665 456888887778888999 99998876654321     000 0011234678996 579


Q ss_pred             hHHHHHHHHHcCCEEeccceeeeEEecCCCce-EEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccC
Q 017658           89 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC-ISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA  167 (368)
Q Consensus        89 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~-v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~  167 (368)
                      +++|++.+   |++|++|++|++|..++  ++ +. |+++|+++.||+||+|+|+..+.+|+..+.++ ....+.++.+.
T Consensus       218 ~~~l~~~l---g~~i~~~~~V~~i~~~~--~~~v~-v~~~~~~~~ad~VI~a~p~~~~~~l~~~p~lp-~~~~~~i~~~~  290 (453)
T 2yg5_A          218 SIRMAEAL---GDDVFLNAPVRTVKWNE--SGATV-LADGDIRVEASRVILAVPPNLYSRISYDPPLP-RRQHQMHQHQS  290 (453)
T ss_dssp             HHHHHHHH---GGGEECSCCEEEEEEET--TEEEE-EETTTEEEEEEEEEECSCGGGGGGSEEESCCC-HHHHHHGGGEE
T ss_pred             HHHHHHhc---CCcEEcCCceEEEEEeC--CceEE-EEECCeEEEcCEEEEcCCHHHHhcCEeCCCCC-HHHHHHHhcCC
Confidence            99998765   78999999999999877  55 54 66678899999999999999998887554442 34556778888


Q ss_pred             ccceEEEEEEecCCCCCCCCCc-eeecCCCCccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHH
Q 017658          168 SIDVVSVKLWFDKKVTVPNVSN-ACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVS  244 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~  244 (368)
                      +.+..++++.|++++|...... .+...+....+ .++.+.     .+.+..++.....  .+..|.+++++++++.+++
T Consensus       291 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~-~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  364 (453)
T 2yg5_A          291 LGLVIKVHAVYETPFWREDGLSGTGFGASEVVQE-VYDNTN-----HEDDRGTLVAFVSDEKADAMFELSAEERKATILA  364 (453)
T ss_dssp             ECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCE-EEECCC-----TTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CcceEEEEEEECCCCCCCCCCCceeecCCCCeEE-EEeCCC-----CCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHH
Confidence            8888899999998876432211 11111222222 344331     1111234433222  1234556788999999999


Q ss_pred             HHhhhccCCCCCceeeeEEeecCCCc-------cccCCCCcC-CCCCCCCCCCceEEeccccccCCCCccchHHhHHHHH
Q 017658          245 YLSKCIKDFSTATVMDHKIRRFPKSL-------THFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE  316 (368)
Q Consensus       245 ~l~~~~p~~~~~~i~~~~~~~~~~~~-------~~~~pg~~~-~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~  316 (368)
                      .|+++||... .+++.....+|....       +.+.||... .++...+|++||||||++++..++ ++++||+.||++
T Consensus       365 ~L~~~~~~~~-~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~-g~v~gA~~SG~~  442 (453)
T 2yg5_A          365 SLARYLGPKA-EEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGY-QHVDGAVRMGQR  442 (453)
T ss_dssp             HHHHHHCGGG-GCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTT-TSHHHHHHHHHH
T ss_pred             HHHHHhCccC-CCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccc-cchHHHHHHHHH
Confidence            9999997522 135555566675431       123455321 233456789999999999986677 699999999999


Q ss_pred             HHHHHHHHhC
Q 017658          317 AANRVVDYLG  326 (368)
Q Consensus       317 aA~~Il~~~~  326 (368)
                      ||++|++.++
T Consensus       443 aA~~i~~~l~  452 (453)
T 2yg5_A          443 TAADIIARSK  452 (453)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHhc
Confidence            9999998865

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.93  E-value=5.5e-25  Score=214.85  Aligned_cols=295  Identities=13%  Similarity=0.084  Sum_probs=211.1

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hhc--------------
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH--------------   71 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~--------------   71 (368)
                      ..+++|+.+|+++ ++++++.+.+++|++.+.++.+++++|+..++..+....          +..              
T Consensus       140 ~~~~~s~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~  218 (477)
T 3nks_A          140 KEPDETVHSFAQR-RLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQ  218 (477)
T ss_dssp             CSSCCBHHHHHHH-HHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHH
T ss_pred             CCCCcCHHHHHHH-hhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhh
Confidence            3478999999998 678999999999999999999999999988766544310          000              


Q ss_pred             --CCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhh
Q 017658           72 --QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI  149 (368)
Q Consensus        72 --~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll  149 (368)
                        .+...+.+++||+ ..|+++|++.++++|++|+++++|++|..++  ++++.|.++++++.||+||+|+|++.+.+|+
T Consensus       219 ~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~v~~~~~~~~ad~vv~a~p~~~~~~ll  295 (477)
T 3nks_A          219 ALAERWSQWSLRGGL-EMLPQALETHLTSRGVSVLRGQPVCGLSLQA--EGRWKVSLRDSSLEADHVISAIPASVLSELL  295 (477)
T ss_dssp             HHHTTCSEEEETTCT-THHHHHHHHHHHHTTCEEECSCCCCEEEECG--GGCEEEECSSCEEEESEEEECSCHHHHHHHS
T ss_pred             hcccCccEEEECCCH-HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcC--CceEEEEECCeEEEcCEEEECCCHHHHHHhc
Confidence              0122356778997 5799999999999999999999999999876  4435677777789999999999999999998


Q ss_pred             hhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCC---CccceeeeccccccccCCCCCeEEEEEeec
Q 017658          150 KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFYH  226 (368)
Q Consensus       150 ~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~  226 (368)
                      ++..   ++..+.+..+.+.++.++++.|++++++...+..+.....   ..++ +++.+.......+++..++.+.+..
T Consensus       296 ~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~l~~~~gg  371 (477)
T 3nks_A          296 PAEA---APLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGI-VYDSVAFPEQDGSPPGLRVTVMLGG  371 (477)
T ss_dssp             CGGG---HHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEE-ECHHHHCGGGSTTTTCEEEEEEECH
T ss_pred             cccC---HHHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEE-EEeccccCCCCCCCCceEEEEEECC
Confidence            7642   3456778888888899999999988763333322221111   1123 3443322111212345665443321


Q ss_pred             C------CCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC----CCCCCceEEecc
Q 017658          227 A------NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG----FTSFPNLFMAGD  296 (368)
Q Consensus       227 ~------~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~----~~~~~~L~laGd  296 (368)
                      .      ....+.+++++++.++++|.++++...  ++....+.+|+++++.|.+|+.......    ....+|||+|||
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~  449 (477)
T 3nks_A          372 SWLQTLEASGCVLSQELFQQRAQEAAATQLGLKE--MPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGA  449 (477)
T ss_dssp             HHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCS--CCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECST
T ss_pred             ccccccccccCCCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence            1      111246899999999999999996432  4667778889999999998865321111    112368999999


Q ss_pred             ccccCCCCccchHHhHHHHHHHHHHHHH
Q 017658          297 WITTRHGSWSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       297 ~~~~~~~~~~~egA~~Sg~~aA~~Il~~  324 (368)
                      |+. |   .++++|+.||+.+|++|+.+
T Consensus       450 ~~~-G---~gv~~a~~sg~~aA~~il~~  473 (477)
T 3nks_A          450 SYE-G---VAVNDCIESGRQAAVSVLGT  473 (477)
T ss_dssp             TTS-C---CSHHHHHHHHHHHHHHHHHC
T ss_pred             CCC-C---CcHHHHHHHHHHHHHHHHhc
Confidence            985 3   46899999999999999875

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.93  E-value=2.1e-24  Score=211.81  Aligned_cols=293  Identities=14%  Similarity=0.071  Sum_probs=203.3

Q ss_pred             hhhccCccHHHHHHHcC--CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH---hhcCCCcceeeecCCcchhh
Q 017658           14 WRKYDSITARELFKQFG--CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII---LAHQKNFDLVWCRGTLREKI   88 (368)
Q Consensus        14 ~~~ld~~S~~d~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~---~~~~~~~~~~~~~GG~~~~L   88 (368)
                      +..++++|+.+||++.+  +++.. +.++++++...++.+++++|+..++..+....   ...........+.||+ ..|
T Consensus       180 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l  257 (495)
T 2vvm_A          180 FRKYDEMSYSERIDQIRDELSLNE-RSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQ-SAF  257 (495)
T ss_dssp             HHHHHTSBHHHHHHHHGGGCCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCH-HHH
T ss_pred             hhhhhhhhHHHHHHHhhccCCHHH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCH-HHH
Confidence            46788999999999877  77764 57899999999999999999988776543210   0000011234568996 579


Q ss_pred             hHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhcc
Q 017658           89 FEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL  166 (368)
Q Consensus        89 ~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l  166 (368)
                      +++|.+.+++.| ++|+++++|++|..++  +++. |++. |++++||+||+|+|+..+.++...+.++ ....++++.+
T Consensus       258 ~~~l~~~l~~~g~~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp-~~~~~ai~~~  333 (495)
T 2vvm_A          258 ARRFWEEAAGTGRLGYVFGCPVRSVVNER--DAAR-VTARDGREFVAKRVVCTIPLNVLSTIQFSPALS-TERISAMQAG  333 (495)
T ss_dssp             HHHHHHHHHTTTCEEEESSCCEEEEEECS--SSEE-EEETTCCEEEEEEEEECCCGGGGGGSEEESCCC-HHHHHHHHHC
T ss_pred             HHHHHHHhhhcCceEEEeCCEEEEEEEcC--CEEE-EEECCCCEEEcCEEEECCCHHHHhheeeCCCCC-HHHHHHHHhc
Confidence            999999999998 9999999999999876  4454 6665 5689999999999999998876444442 4456778888


Q ss_pred             CccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 017658          167 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL  246 (368)
Q Consensus       167 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l  246 (368)
                      .+.+..++++.|+++++.  .+..+...+....+ +++...     .+.+..++.. +.....  .+++++..+.+++.|
T Consensus       334 ~~~~~~kv~l~~~~~~~~--~~~g~~~~~~~~~~-~~~~~~-----~~~~~~vl~~-~~~~~~--~~~~~e~~~~~~~~L  402 (495)
T 2vvm_A          334 HVSMCTKVHAEVDNKDMR--SWTGIAYPFNKLCY-AIGDGT-----TPAGNTHLVC-FGNSAN--HIQPDEDVRETLKAV  402 (495)
T ss_dssp             CCCCCEEEEEEESCGGGG--GEEEEECSSCSSCE-EEEEEE-----CTTSCEEEEE-EECSTT--CCCTTTCHHHHHHHH
T ss_pred             CCCceeEEEEEECCccCC--CceeEecCCCCcEE-EecCCC-----CCCCCeEEEE-EeCccc--cCCCHHHHHHHHHHH
Confidence            888889999999987652  22212111222223 232221     1123344433 332222  134556678889999


Q ss_pred             hhhccCCCCCceeeeEEeecCC------CccccCCCCcC-CCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHH
Q 017658          247 SKCIKDFSTATVMDHKIRRFPK------SLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN  319 (368)
Q Consensus       247 ~~~~p~~~~~~i~~~~~~~~~~------~~~~~~pg~~~-~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~  319 (368)
                      ++++|+..  ++....+.+|..      +++.+.||... .++...+|.+||||||++++..++ ++||||+.||++||+
T Consensus       403 ~~~~~~~~--~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~-g~veGAi~SG~raA~  479 (495)
T 2vvm_A          403 GQLAPGTF--GVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWR-SFIDGAIEEGTRAAR  479 (495)
T ss_dssp             HTTSTTSC--CEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSST-TSHHHHHHHHHHHHH
T ss_pred             HHhcCCCC--CceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCc-eEEEhHHHHHHHHHH
Confidence            99998743  466666677843      33334455421 122334578999999999986677 799999999999999


Q ss_pred             HHHHHhC
Q 017658          320 RVVDYLG  326 (368)
Q Consensus       320 ~Il~~~~  326 (368)
                      +|++.++
T Consensus       480 ~i~~~l~  486 (495)
T 2vvm_A          480 VVLEELG  486 (495)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9999987

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.92  E-value=5.2e-24  Score=208.00  Aligned_cols=293  Identities=14%  Similarity=0.094  Sum_probs=201.4

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hh-----------cCCC
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LA-----------HQKN   74 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~-----------~~~~   74 (368)
                      ..+++|+.+|+++ .+++++.+.++.|++...++.+++++|+..++..+..+.          +.           ....
T Consensus       145 ~~~~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (478)
T 2ivd_A          145 EGVDESLAAFGRR-HLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTA  223 (478)
T ss_dssp             TTCCCBHHHHHHH-HTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCS
T ss_pred             CCCCCCHHHHHHH-hhCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCccccc
Confidence            3678999999998 588999999999999999999999999877655443221          00           0011


Q ss_pred             ----cceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCeEEecCEEEEeeChhhHH
Q 017658           75 ----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        75 ----~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~~~~ad~VV~a~p~~~l~  146 (368)
                          ....+++||+ ..|+++|++.+   |++|+++++|++|..++  +++ .|++    +|+++.||+||+|+|++.+.
T Consensus       224 ~~~~~~~~~~~gG~-~~l~~~l~~~l---g~~i~~~~~V~~i~~~~--~~~-~v~~~~~~~g~~~~ad~vV~a~~~~~~~  296 (478)
T 2ivd_A          224 PKLSGALSTFDGGL-QVLIDALAASL---GDAAHVGARVEGLARED--GGW-RLIIEEHGRRAELSVAQVVLAAPAHATA  296 (478)
T ss_dssp             CCCCCCEEEETTCT-HHHHHHHHHHH---GGGEESSEEEEEEECC----CC-EEEEEETTEEEEEECSEEEECSCHHHHH
T ss_pred             ccccccEEEECCCH-HHHHHHHHHHh---hhhEEcCCEEEEEEecC--CeE-EEEEeecCCCceEEcCEEEECCCHHHHH
Confidence                3456788996 57999999877   57999999999999876  444 4665    46789999999999999999


Q ss_pred             HhhhhccccCchhHHhhhccCccceEEEEEEecCCCCCC-CCCceeecC--CCCccceeeeccccccccCCCCCeEEEEE
Q 017658          147 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGF--GDSLAWTFFDLNKIYDEHKDDSATVIQAD  223 (368)
Q Consensus       147 ~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~d~s~~~~~~~~~~~~v~~~~  223 (368)
                      +|+++  + +....+.+..+.+.++.++.+.++++++.. ..+..+...  +....+..++.+ ..+...+++..++.+.
T Consensus       297 ~ll~~--l-~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~p~g~~~l~~~  372 (478)
T 2ivd_A          297 KLLRP--L-DDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHAST-TFPFRAEGGRVLYSCM  372 (478)
T ss_dssp             HHHTT--T-CHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHH-HCGGGBSTTCEEEEEE
T ss_pred             HHhhc--c-CHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcc-cCCCcCCCCCEEEEEE
Confidence            88864  2 244567788888888999999999886532 122222111  111222233322 1122222344555443


Q ss_pred             eec--CCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCC----CCCCCCCCceEEeccc
Q 017658          224 FYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDW  297 (368)
Q Consensus       224 ~~~--~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~----p~~~~~~~~L~laGd~  297 (368)
                      ...  +..+.+.+++++.+.+++.|+++||...  ++....+.+|+.+++.+.+|.....    +...+ .+||||||++
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~  449 (478)
T 2ivd_A          373 VGGARQPGLVEQDEDALAALAREELKALAGVTA--RPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNA  449 (478)
T ss_dssp             EECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCS--CCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTT
T ss_pred             eCCcCCccccCCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccC
Confidence            332  2234567899999999999999998754  4555567789998877777753211    11112 6899999999


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          298 ITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       298 ~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                      +. +   .+++||+.||+.||+.|++.++.
T Consensus       450 ~~-g---~gv~gA~~SG~~aA~~i~~~l~~  475 (478)
T 2ivd_A          450 YK-G---VGLNDCIRNAAQLADALVAGNTS  475 (478)
T ss_dssp             TS-C---CSHHHHHHHHHHHHHHHCC----
T ss_pred             CC-C---CCHHHHHHHHHHHHHHHHHhhcc
Confidence            83 2   36899999999999999988764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.91  E-value=4.2e-23  Score=202.73  Aligned_cols=291  Identities=10%  Similarity=0.059  Sum_probs=156.9

Q ss_pred             ccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHHHHHc
Q 017658           20 ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR   99 (368)
Q Consensus        20 ~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~l~~~   99 (368)
                      .|+.+++.++..++. ++.++... ...++..|.+.++...+  +...  ..  .....+++||+ .+|+++|++.++++
T Consensus       164 ~~~~~~~~~~~~~~~-l~~~l~~~-~~~~g~~p~~~~~~~~~--~~~~--~~--~~G~~~p~GG~-~~l~~aL~~~~~~~  234 (501)
T 4dgk_A          164 RSVYSKVASYIEDEH-LRQAFSFH-SLLVGGNPFATSSIYTL--IHAL--ER--EWGVWFPRGGT-GALVQGMIKLFQDL  234 (501)
T ss_dssp             HHHHHHHHTTCCCHH-HHHHHHHH-HHHHHSCC--CCCTHHH--HHHH--HS--CCCEEEETTHH-HHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHhccHH-HHhhhhhh-hcccCCCcchhhhhhhh--hhhh--hc--cCCeEEeCCCC-cchHHHHHHHHHHh
Confidence            367788887544444 44555532 23445566666554322  1111  11  22346899996 57999999999999


Q ss_pred             CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhccccCchhHHhhhccCcc-ceEEEEE
Q 017658          100 GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLASI-DVVSVKL  176 (368)
Q Consensus       100 G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~-~ll~~~~l~~~~~~~~i~~l~~~-~~~~v~l  176 (368)
                      |++|++|++|++|..++  +++++|++. |+++.||+||++++++.+. .|++....+ ....+.+...++. ..+++++
T Consensus       235 Gg~I~~~~~V~~I~~~~--~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~~~s~~~~~~  311 (501)
T 4dgk_A          235 GGEVVLNARVSHMETTG--NKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAA-VKQSNKLQTKRMSNSLFVLYF  311 (501)
T ss_dssp             TCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSCEEECCC----------------------------CCEEEEEEE
T ss_pred             CCceeeecceeEEEeeC--CeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccc-hhhhhhhhccccCCceeEEEe
Confidence            99999999999999988  789999986 7899999999999998775 566654332 2334455555553 4667788


Q ss_pred             EecCCCCCCCCCceeecCCC--------------Cccceeee-ccccccccCCCCCeEEEEE-eecCCCCCC----CCHH
Q 017658          177 WFDKKVTVPNVSNACSGFGD--------------SLAWTFFD-LNKIYDEHKDDSATVIQAD-FYHANELMP----LKDD  236 (368)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~d-~s~~~~~~~~~~~~v~~~~-~~~~~~~~~----~~~~  236 (368)
                      .++++......++.+++.+.              .....+.. .+...+...+++.+.+.+. ..+...+.+    ..++
T Consensus       312 ~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~~~~~~~~~~~~~  391 (501)
T 4dgk_A          312 GLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWTVEGP  391 (501)
T ss_dssp             EESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCTTTSCCCHHHHHH
T ss_pred             cccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCccccccccHHHHHH
Confidence            88876542212223332110              00011111 1222234444555544332 222222222    2356


Q ss_pred             HHHHHHHHHHhhh-ccCCCCCceeeeEEeecCCCccccCC---C-----------CcCCCCCC-CCCCCceEEecccccc
Q 017658          237 QVVAKAVSYLSKC-IKDFSTATVMDHKIRRFPKSLTHFFP---G-----------SYKYMMRG-FTSFPNLFMAGDWITT  300 (368)
Q Consensus       237 e~~~~~~~~l~~~-~p~~~~~~i~~~~~~~~~~~~~~~~p---g-----------~~~~~p~~-~~~~~~L~laGd~~~~  300 (368)
                      ++.+++++.|++. +|++++ .++...+. +|.++..+.+   |           ....||.. .|+++||||||+++++
T Consensus       392 ~~~~~vl~~l~~~~~P~~~~-~i~~~~~~-tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~p  469 (501)
T 4dgk_A          392 KLRDRIFAYLEQHYMPGLRS-QLVTHRMF-TPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHP  469 (501)
T ss_dssp             HHHHHHHHHHHHHTCTTHHH-HEEEEEEE-CTTTTC------------------------------CCTTEEECCCH---
T ss_pred             HHHHHHHHHHHHhhCCChHH-ceEEEEEC-CHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEECCCCCC
Confidence            6788899999875 599875 56655554 4444332211   1           11245644 4789999999999976


Q ss_pred             CCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          301 RHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       301 ~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                      |   +++.||+.||+.||+.|++++..
T Consensus       470 G---~Gv~ga~~SG~~aA~~il~dL~g  493 (501)
T 4dgk_A          470 G---AGIPGVIGSAKATAGLMLEDLIG  493 (501)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHC-
T ss_pred             c---ccHHHHHHHHHHHHHHHHHHhcC
Confidence            4   57899999999999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.91  E-value=9.9e-24  Score=205.22  Aligned_cols=291  Identities=15%  Similarity=0.205  Sum_probs=202.7

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hhc-----------CCC
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH-----------QKN   74 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~-----------~~~   74 (368)
                      ..+++|+.+|+++ .++.+..+.++.|++.+.++.+++++|+...+..+..+.          ...           ...
T Consensus       146 ~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (470)
T 3i6d_A          146 TKDDQSLGEFFRR-RVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQ  224 (470)
T ss_dssp             SSSCCBHHHHHHH-HSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------------------------
T ss_pred             CCCCcCHHHHHHH-hcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCC
Confidence            3578999999998 578888999999999999999999999876654332110          000           001


Q ss_pred             cceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhcc
Q 017658           75 FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSI  153 (368)
Q Consensus        75 ~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~  153 (368)
                      ....+++||+ ..|+++|++.+.+  ++|+++++|++|..++  +++ .|++. |++++||+||+|+|++++.+++.++ 
T Consensus       225 ~~~~~~~~g~-~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~~-~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~-  297 (470)
T 3i6d_A          225 GQFQTLSTGL-QTLVEEIEKQLKL--TKVYKGTKVTKLSHSG--SCY-SLELDNGVTLDADSVIVTAPHKAAAGMLSEL-  297 (470)
T ss_dssp             --EEEETTCT-HHHHHHHHHTCCS--EEEECSCCEEEEEECS--SSE-EEEESSSCEEEESEEEECSCHHHHHHHTTTS-
T ss_pred             ceEEEeCChH-HHHHHHHHHhcCC--CEEEeCCceEEEEEcC--CeE-EEEECCCCEEECCEEEECCCHHHHHHHcCCc-
Confidence            2345678996 5799999887754  7999999999999877  445 46665 6689999999999999999988764 


Q ss_pred             ccCchhHHhhhccCccceEEEEEEecCCCCCCCC--CceeecCCCCcc--ceeeeccccccccCCCCCeEEEEEee--cC
Q 017658          154 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV--SNACSGFGDSLA--WTFFDLNKIYDEHKDDSATVIQADFY--HA  227 (368)
Q Consensus       154 l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~--~~~~~~~~~~~~--~~~~d~s~~~~~~~~~~~~v~~~~~~--~~  227 (368)
                          +..+.+..+.+.++.++.+.++++++....  ...+........  ...++ ++..+...+++..++.+.+.  ..
T Consensus       298 ----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~-s~~~~~~~p~~~~~l~~~~~~~~~  372 (470)
T 3i6d_A          298 ----PAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWT-NKKWPHAAPEGKTLLRAYVGKAGD  372 (470)
T ss_dssp             ----TTHHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEH-HHHCGGGSCTTCEEEEEEECCSSC
T ss_pred             ----hhhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEE-cCcCCCcCCCCCEEEEEEECCCCC
Confidence                224577888888999999999998774321  111221111110  01122 21122223234455444332  12


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCC----CCCCCCCCCceEEeccccccCCC
Q 017658          228 NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHG  303 (368)
Q Consensus       228 ~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~----~p~~~~~~~~L~laGd~~~~~~~  303 (368)
                      ..+.+++++++++.++++|.++||...  ++....+.+|+++++.+.+|....    ++...++.+||||||+++. +  
T Consensus       373 ~~~~~~~~~~~~~~~~~~l~~~~g~~~--~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~-g--  447 (470)
T 3i6d_A          373 ESIVDLSDNDIINIVLEDLKKVMNING--EPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFE-G--  447 (470)
T ss_dssp             CGGGTSCHHHHHHHHHHHHGGGSCCCS--CCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTS-C--
T ss_pred             ccccCCCHHHHHHHHHHHHHHHhCCCC--CceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCC-C--
Confidence            335578899999999999999998643  566677888999988888886421    1222245689999999885 2  


Q ss_pred             CccchHHhHHHHHHHHHHHHHh
Q 017658          304 SWSQERSYVTGLEAANRVVDYL  325 (368)
Q Consensus       304 ~~~~egA~~Sg~~aA~~Il~~~  325 (368)
                       .++++|+.||+.+|++|++.+
T Consensus       448 -~gv~~a~~sG~~aA~~i~~~l  468 (470)
T 3i6d_A          448 -VGIPDCIDQGKAAVSDALTYL  468 (470)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHHHh
Confidence             369999999999999999876

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.90  E-value=2e-23  Score=203.69  Aligned_cols=291  Identities=13%  Similarity=0.092  Sum_probs=202.7

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hhcC-------------
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAHQ-------------   72 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~~-------------   72 (368)
                      ..+++|+.+|+++ ++++++.+.+++|++.+.++.+++++|+...+..+..+.          ....             
T Consensus       144 ~~~~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  222 (475)
T 3lov_A          144 PEQDIPLGEYLRP-RLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTI  222 (475)
T ss_dssp             CSSCCBHHHHHHH-HHCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC------------
T ss_pred             CCCCcCHHHHHHH-HhCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccc
Confidence            5688999999998 578899999999999999999999999865444332210          0000             


Q ss_pred             -CCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 017658           73 -KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        73 -~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                       ....+.+++||+ ..|+++|++.+.+  ++|+++++|++|..++  +++ .|++.+++++||+||+|+|++++.+|+++
T Consensus       223 ~~~~~~~~~~~G~-~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~~-~v~~~~g~~~ad~vV~a~p~~~~~~ll~~  296 (475)
T 3lov_A          223 KATGQFLSLETGL-ESLIERLEEVLER--SEIRLETPLLAISRED--GRY-RLKTDHGPEYADYVLLTIPHPQVVQLLPD  296 (475)
T ss_dssp             --CCSEEEETTCH-HHHHHHHHHHCSS--CEEESSCCCCEEEEET--TEE-EEECTTCCEEESEEEECSCHHHHHHHCTT
T ss_pred             cCCCcEEeeCChH-HHHHHHHHhhccC--CEEEcCCeeeEEEEeC--CEE-EEEECCCeEECCEEEECCCHHHHHHHcCc
Confidence             123445678996 5799999887765  7999999999999887  555 46666448999999999999999999876


Q ss_pred             ccccCchhHHhhhccCccceEEEEEEecCCCCCCCC-CceeecCCCCcc--ceeeeccccccccCCCCCeEEEEEee--c
Q 017658          152 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLA--WTFFDLNKIYDEHKDDSATVIQADFY--H  226 (368)
Q Consensus       152 ~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~--~~~~d~s~~~~~~~~~~~~v~~~~~~--~  226 (368)
                      ..   .   +.+..+.+.++.++.+.|++++..+.. ...+........  ...++ ++..+... ++..++...+.  .
T Consensus       297 ~~---~---~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~-s~~~~~~~-p~~~~l~~~~~~~~  368 (475)
T 3lov_A          297 AH---L---PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAI-DQKWNHSA-PDHTVLRAFVGRPG  368 (475)
T ss_dssp             SC---C---HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEH-HHHCTTTC-TTEEEEEEEECBTT
T ss_pred             cC---H---HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEE-cccCCCCC-CCcEEEEEEeCCCC
Confidence            42   1   567788888999999999988722211 112222111110  11122 21122222 22334333222  1


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCC----CCCCCCCCCceEEeccccccCC
Q 017658          227 ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRH  302 (368)
Q Consensus       227 ~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~----~p~~~~~~~~L~laGd~~~~~~  302 (368)
                      ...+.+.+++++++.++++|.++||...  ++....+.+|+++++.+.+|+...    ++...++.+||||||+++..  
T Consensus       369 ~~~~~~~~~e~~~~~~~~~L~~~~g~~~--~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g--  444 (475)
T 3lov_A          369 NDHLVHESDEVLQQAVLQDLEKICGRTL--EPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDG--  444 (475)
T ss_dssp             BCGGGGSCHHHHHHHHHHHHHHHHSSCC--CCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSC--
T ss_pred             CCcccCCCHHHHHHHHHHHHHHHhCCCC--CCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCC--
Confidence            2335567899999999999999998643  566777888999988888886321    12222456899999999852  


Q ss_pred             CCccchHHhHHHHHHHHHHHHHhCC
Q 017658          303 GSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       303 ~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                        .+|++|+.||+.+|++|++.++.
T Consensus       445 --~g~~~a~~sG~~aA~~i~~~l~~  467 (475)
T 3lov_A          445 --VGLPDCVASAKTMIESIELEQSH  467 (475)
T ss_dssp             --SSHHHHHHHHHHHHHHHHHTC--
T ss_pred             --CCHHHHHHHHHHHHHHHHHHhhc
Confidence              46999999999999999998874

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.89  E-value=6.2e-23  Score=201.74  Aligned_cols=295  Identities=13%  Similarity=0.126  Sum_probs=197.1

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--------------hhcC----------
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--------------LAHQ----------   72 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--------------~~~~----------   72 (368)
                      .+++|+.+|+++ .+++++++.+++|++.+.++.+++++|+..++..+....              +...          
T Consensus       147 ~~~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  225 (504)
T 1sez_A          147 DSHESVSGFFQR-HFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKT  225 (504)
T ss_dssp             -CCCBHHHHHHH-HHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CC
T ss_pred             CCCccHHHHHHH-HcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccch
Confidence            467999999998 488999999999999999999999999876543332210              0000          


Q ss_pred             -----CCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCce----EEEEEEC---C---eEEecCEEE
Q 017658           73 -----KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC----ISDVVCG---K---ETYSAGAVV  137 (368)
Q Consensus        73 -----~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~----v~~v~~~---g---~~~~ad~VV  137 (368)
                           ......+++||+ +.|+++|++.+.+  ++|++|++|++|..+++ +.    ++.|++.   |   ++++||+||
T Consensus       226 ~~~~~~~~~~~~~~GG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~-~~~~~~~~~v~~~~~~g~~~~~~~ad~VI  301 (504)
T 1sez_A          226 SANKKRQRGSFSFLGGM-QTLTDAICKDLRE--DELRLNSRVLELSCSCT-EDSAIDSWSIISASPHKRQSEEESFDAVI  301 (504)
T ss_dssp             CSCCSTTCSCBEETTCT-HHHHHHHHTTSCT--TTEETTCCEEEEEEECS-SSSSSCEEEEEEBCSSSSCBCCCEESEEE
T ss_pred             hhccccCCceEeeCcHH-HHHHHHHHhhccc--ceEEcCCeEEEEEecCC-CCcccceEEEEEcCCCCccceeEECCEEE
Confidence                 011245678996 5799999865421  79999999999998774 31    1345553   4   578999999


Q ss_pred             EeeChhhHHHhhhh---ccccCchhHHhhhccCccceEEEEEEecCCCCCCC--CCceeecCCC-----Cccceeeeccc
Q 017658          138 LAVGISTLQELIKN---SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN--VSNACSGFGD-----SLAWTFFDLNK  207 (368)
Q Consensus       138 ~a~p~~~l~~ll~~---~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~d~s~  207 (368)
                      +|+|+..+.+++..   ..++ +.   .+..+.+.++.++++.|+++++...  .+..+.....     .....+++ +.
T Consensus       302 ~a~p~~~l~~ll~~~~~~~~~-~~---~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~-s~  376 (504)
T 1sez_A          302 MTAPLCDVKSMKIAKRGNPFL-LN---FIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFS-SM  376 (504)
T ss_dssp             ECSCHHHHHTSEEESSSSBCC-CT---TSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEH-HH
T ss_pred             ECCCHHHHHHHhhcccCCccc-HH---HHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEee-cc
Confidence            99999999998742   1121 11   2556677788899999998765321  1222211110     00011121 22


Q ss_pred             cccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCC---
Q 017658          208 IYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM---  282 (368)
Q Consensus       208 ~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p---  282 (368)
                      ..+...+++..++.....  .+..|..++++++++.++++|++++|...  ++....+.+|+.+++.+.+|.....+   
T Consensus       377 ~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~--~p~~~~~~~w~~~~p~~~~g~~~~~~~~~  454 (504)
T 1sez_A          377 MFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEG--EPTYVNHLYWSKAFPLYGHNYDSVLDAID  454 (504)
T ss_dssp             HCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCS--CCSSEEEEEEEEEEECCCTTHHHHHHHHH
T ss_pred             ccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCC--CCeEEEEeECCCCCCccCcCHHHHHHHHH
Confidence            223333233444433222  12346678899999999999999998643  45666777898888888887532111   


Q ss_pred             CCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          283 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       283 ~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                      ...++++||||||++++   + .++++|+.||++||++|++.++.
T Consensus       455 ~~~~~~~~l~~aG~~~~---g-~~v~gai~sG~~aA~~il~~l~~  495 (504)
T 1sez_A          455 KMEKNLPGLFYAGNHRG---G-LSVGKALSSGCNAADLVISYLES  495 (504)
T ss_dssp             HHHHHSTTEEECCSSSS---C-SSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhCCCEEEEeecCC---C-CCHHHHHHHHHHHHHHHHHHHhh
Confidence            12246789999999985   2 47999999999999999999874

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.88  E-value=1.5e-22  Score=197.52  Aligned_cols=298  Identities=11%  Similarity=0.093  Sum_probs=185.4

Q ss_pred             ccCccHHH--HHHHcCC--CHHHHHHHHHHHHHh-hhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHH
Q 017658           17 YDSITARE--LFKQFGC--SERLYRNVIGPLVQV-GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEP   91 (368)
Q Consensus        17 ld~~S~~d--~l~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~   91 (368)
                      .+++|+.+  ++.+...  .....+.++++++.. .++.+++..|+..+... ..+. .......+....||+ ..|+++
T Consensus       135 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-~~~~~~~~~~~~gG~-~~l~~~  211 (472)
T 1b37_A          135 RDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL-ATFS-DFGDDVYFVADQRGY-EAVVYY  211 (472)
T ss_dssp             TTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSC-HHHH-HHCSEEEEECCTTCT-THHHHH
T ss_pred             chhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccc-cccc-ccCCceeeeecCCcH-HHHHHH
Confidence            46677764  6654321  122234566665532 24556666664322110 1110 111111122236896 579999


Q ss_pred             HHHHHHHc--------CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhh--hccccCchhH
Q 017658           92 WMDSMRTR--------GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK--NSILCNREEF  160 (368)
Q Consensus        92 l~~~l~~~--------G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~--~~~l~~~~~~  160 (368)
                      |++.+.+.        |++|+++++|++|..++  ++|+ |++. |++++||+||+|+|+..+.+++.  .+.++ ....
T Consensus       212 l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp-~~~~  287 (472)
T 1b37_A          212 LAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP--GGVT-VKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLP-TWKV  287 (472)
T ss_dssp             HHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS--SCEE-EEETTSCEEEESEEEECSCHHHHHTTSSEEESCCC-HHHH
T ss_pred             HHHhccccccccccccccEEEcCCEEEEEEEcC--CcEE-EEECCCCEEEcCEEEEecCHHHhccCCeeECCCCC-HHHH
Confidence            99888765        78999999999999877  5565 6665 66899999999999999987542  23342 4456


Q ss_pred             HhhhccCccceEEEEEEecCCCCCCCCCceee--cC-CCCccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCH
Q 017658          161 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACS--GF-GDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKD  235 (368)
Q Consensus       161 ~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~--~~-~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~  235 (368)
                      +++..+.+.+..++.+.|++++|...+...+.  .. +..... .+..  ..+. . ++++++...+..  +..|..+++
T Consensus       288 ~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~-p~~~~l~~~~~~~~a~~~~~~~~  362 (472)
T 1b37_A          288 RAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYG-VWQE--FEKQ-Y-PDANVLLVTVTDEESRRIEQQSD  362 (472)
T ss_dssp             HHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSC-EEEE--CTTT-S-TTCCEEEEEEEHHHHHHHHTSCH
T ss_pred             HHHHhcCCcceeEEEEECCCcCCCCCCCcceEEecccCCccce-eeec--ccCC-C-CCCCEEEEEechHHHHHHHhCCH
Confidence            78888888888899999999887432211111  11 111111 1110  1111 1 234444333321  123556789


Q ss_pred             HHHHHHHHHHHhhhccCCCCCceeeeEEeecC------CCccccCCCCcC-CCCCCCCCCCceEEeccccccCCCCccch
Q 017658          236 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFP------KSLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQE  308 (368)
Q Consensus       236 ~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~------~~~~~~~pg~~~-~~p~~~~~~~~L~laGd~~~~~~~~~~~e  308 (368)
                      +++.+.++++|+++||+....+++...+.+|.      .++..+.||... .++...+|++||||||+++++.++ ++|+
T Consensus       363 ~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~-g~v~  441 (472)
T 1b37_A          363 EQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYN-GYVH  441 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTT-TSHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCC-Cchh
Confidence            99999999999999988642245555555662      223333445431 123345789999999999987666 7999


Q ss_pred             HHhHHHHHHHHHHHHHhCC
Q 017658          309 RSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       309 gA~~Sg~~aA~~Il~~~~~  327 (368)
                      ||+.||++||++|++.++.
T Consensus       442 GA~~SG~~aA~~i~~~l~~  460 (472)
T 1b37_A          442 GAYLSGIDSAEILINCAQK  460 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.85  E-value=4.4e-20  Score=172.45  Aligned_cols=228  Identities=10%  Similarity=0.080  Sum_probs=160.2

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhc--ccc
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNS--ILC  155 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~--~l~  155 (368)
                      ...+|+ ..+++.|++.+   |++|+++++|++|..++  ++++ |.++ |++++||.||+|+|++++.+|+++.  .+ 
T Consensus       106 ~~~~g~-~~l~~~l~~~~---g~~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l-  177 (342)
T 3qj4_A          106 VAPQGI-SSIIKHYLKES---GAEVYFRHRVTQINLRD--DKWE-VSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI-  177 (342)
T ss_dssp             ECTTCT-THHHHHHHHHH---TCEEESSCCEEEEEECS--SSEE-EEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS-
T ss_pred             ecCCCH-HHHHHHHHHhc---CCEEEeCCEEEEEEEcC--CEEE-EEECCCCEEEcCEEEECCCHHHHHHHhccccccc-
Confidence            346786 57888887665   89999999999999876  4454 6665 6678999999999999999988642  23 


Q ss_pred             CchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCC-CCccceeeeccccccccCCCCCeEEEEEeec--CCCCCC
Q 017658          156 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG-DSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMP  232 (368)
Q Consensus       156 ~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~  232 (368)
                      ++...+.+..+.+.++.++.+.|+++++.+.+...+...+ ....|..++.+ ......++++.++.+....  +.++.+
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-k~~r~~~~~~~~~v~~~~~~~~~~~~~  256 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNK-KRNIESSEIGPSLVIHTTVPFGVTYLE  256 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHH-HTTCCCC-CCCEEEEEECHHHHHHTTT
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEcccc-CCCCCCCCCCceEEEECCHHHHHHhhc
Confidence            2345678899999999999999998755444543332222 22456434333 2211111233333332221  234667


Q ss_pred             CCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC--CCCCceEEeccccccCCCCccchHH
Q 017658          233 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERS  310 (368)
Q Consensus       233 ~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~--~~~~~L~laGd~~~~~~~~~~~egA  310 (368)
                      .+++++++.++++|.+++|...  ++++..+.+|+++++.+...   .++...  ...++|++||||+..    .++|+|
T Consensus       257 ~~~~~~~~~~~~~l~~~~g~~~--~p~~~~v~rW~~a~p~~~~~---~~~~~~~~~~~~~l~laGd~~~g----~~v~~a  327 (342)
T 3qj4_A          257 HSIEDVQELVFQQLENILPGLP--QPIATKCQKWRHSQVTNAAA---NCPGQMTLHHKPFLACGGDGFTQ----SNFDGC  327 (342)
T ss_dssp             SCHHHHHHHHHHHHHHHSCSCC--CCSEEEEEEETTCSBSSCCS---SSCSCEEEETTTEEEECSGGGSC----SSHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCC--CCceeeeccccccccccccC---CCcceeEecCCccEEEEccccCC----CCccHH
Confidence            8999999999999999998554  56778889999998876441   234332  366899999999953    589999


Q ss_pred             hHHHHHHHHHHHHH
Q 017658          311 YVTGLEAANRVVDY  324 (368)
Q Consensus       311 ~~Sg~~aA~~Il~~  324 (368)
                      +.||+.||++|++.
T Consensus       328 i~sg~~aa~~i~~~  341 (342)
T 3qj4_A          328 ITSALCVLEALKNY  341 (342)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.83  E-value=2.2e-20  Score=183.73  Aligned_cols=296  Identities=12%  Similarity=0.056  Sum_probs=194.3

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHH---------HHHHHhhcCC-----Ccceee-e
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILAHQK-----NFDLVW-C   80 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~---------l~~~~~~~~~-----~~~~~~-~   80 (368)
                      ..+..|+.+|+.+ .+++.+++.++.|++...++.+++++++.++...         ....+.....     .....+ +
T Consensus       139 ~~~~~s~~~~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (513)
T 4gde_A          139 NTKPKTFDEWIVR-MMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPA  217 (513)
T ss_dssp             CSCCCSHHHHHHH-HHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEES
T ss_pred             cccccCHHHHHHH-hhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecc
Confidence            3467899999997 6789999999999999999999999988654221         1111111111     112223 4


Q ss_pred             cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhH
Q 017658           81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEF  160 (368)
Q Consensus        81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~  160 (368)
                      +||+ ..|+++|++.|++.|++|+++++|++|..++  +++  +..+|+++.||+||+|+|++.+.+++.+.     +..
T Consensus       218 ~gG~-~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--~~v--~~~~G~~~~ad~vI~t~P~~~l~~~l~~~-----~~~  287 (513)
T 4gde_A          218 RGGT-GGIWIAVANTLPKEKTRFGEKGKVTKVNANN--KTV--TLQDGTTIGYKKLVSTMAVDFLAEAMNDQ-----ELV  287 (513)
T ss_dssp             SSHH-HHHHHHHHHTSCGGGEEESGGGCEEEEETTT--TEE--EETTSCEEEEEEEEECSCHHHHHHHTTCH-----HHH
T ss_pred             cCCH-HHHHHHHHHHHHhcCeeeecceEEEEEEccC--CEE--EEcCCCEEECCEEEECCCHHHHHHhcCch-----hhH
Confidence            7996 5799999999999999999999999999876  544  33458899999999999999999988753     223


Q ss_pred             HhhhccCccceEEEEEEecCCCCCCC-CCceeecCCCCc-cceeeeccccccccCCC---------------------C-
Q 017658          161 LKVLNLASIDVVSVKLWFDKKVTVPN-VSNACSGFGDSL-AWTFFDLNKIYDEHKDD---------------------S-  216 (368)
Q Consensus       161 ~~i~~l~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~d~s~~~~~~~~~---------------------~-  216 (368)
                      .....+.+.++.++.+.+++...... +...++..+... ...+...++..+...++                     + 
T Consensus       288 ~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~  367 (513)
T 4gde_A          288 GLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKE  367 (513)
T ss_dssp             HHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEEC
T ss_pred             hhhhcccCCceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCc
Confidence            45567788888888888876532111 111111111110 00011111111111100                     1 


Q ss_pred             CeEEEEEe-ecCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCC----CCCCCCCCCce
Q 017658          217 ATVIQADF-YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNL  291 (368)
Q Consensus       217 ~~v~~~~~-~~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~----~p~~~~~~~~L  291 (368)
                      +.+..... ...+.+.+++++++++.+++.|.++.+-....+++...+.+|++++|.|..|+...    ++...  .+||
T Consensus       368 ~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~--~~~l  445 (513)
T 4gde_A          368 GPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQ--DKDI  445 (513)
T ss_dssp             CCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHH--HTTE
T ss_pred             ceEEEEEecccchhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHh--hcCc
Confidence            11111111 12234556889999999999999998654444688888999999999998886432    11111  2699


Q ss_pred             EEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017658          292 FMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       292 ~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~  324 (368)
                      |++|-+-.-.|..+.|++|+.+|++||+.|+.-
T Consensus       446 ~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~g  478 (513)
T 4gde_A          446 WSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVNG  478 (513)
T ss_dssp             EECSTTTTCCGGGCSHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCcccCcCCCCHHHHHHHHHHHHHHHHcC
Confidence            999954322232247999999999999999963

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.83  E-value=1.8e-18  Score=166.51  Aligned_cols=276  Identities=13%  Similarity=0.083  Sum_probs=181.3

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH------hhcCCCcceeeecCCcchhh
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII------LAHQKNFDLVWCRGTLREKI   88 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~------~~~~~~~~~~~~~GG~~~~L   88 (368)
                      ..+| +|+.+|+++.+.++.. ..++.+++...++.+++++|+..++..+....      +..   ... .+.+|+ ..+
T Consensus       137 ~~~d-~s~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~g~-~~l  209 (431)
T 3k7m_X          137 EDLD-IPLNEYVDKLDLPPVS-RQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLS---LDE-VFSNGS-ADL  209 (431)
T ss_dssp             GGGC-SBHHHHHHHHTCCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHT---CCE-EETTCT-HHH
T ss_pred             hhhc-CCHHHHHHhcCCCHHH-HHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecc---hhh-hcCCcH-HHH
Confidence            4577 9999999988777764 45778888888999999999988776554320      011   011 457786 457


Q ss_pred             hHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccC
Q 017658           89 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA  167 (368)
Q Consensus        89 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~  167 (368)
                      ++.+.   ++.| +|+++++|++|..++  ++|+ |.+. |++++||+||+|+|++.+.++...+.++ ....+.+..+.
T Consensus       210 ~~~~~---~~~g-~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~-~~~~~~~~~~~  281 (431)
T 3k7m_X          210 VDAMS---QEIP-EIRLQTVVTGIDQSG--DVVN-VTVKDGHAFQAHSVIVATPMNTWRRIVFTPALP-ERRRSVIEEGH  281 (431)
T ss_dssp             HHHHH---TTCS-CEESSCCEEEEECSS--SSEE-EEETTSCCEEEEEEEECSCGGGGGGSEEESCCC-HHHHHHHHHCC
T ss_pred             HHHHH---hhCC-ceEeCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCcchHhheeeCCCCC-HHHHHHHHhCC
Confidence            77664   4456 999999999999876  4465 6665 6679999999999999998775444342 34456677777


Q ss_pred             ccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHh
Q 017658          168 SIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLS  247 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~  247 (368)
                      +...+++.+.++++++   .   +++........+++....    . .++.++.. +.....+...+ +   +.+.+.|+
T Consensus       282 ~~~~~kv~~~~~~~~~---~---i~~~~d~~~~~~~~~~~~----~-~~~~~l~~-~~~g~~~~~~~-~---~~~~~~l~  345 (431)
T 3k7m_X          282 GGQGLKILIHVRGAEA---G---IECVGDGIFPTLYDYCEV----S-ESERLLVA-FTDSGSFDPTD-I---GAVKDAVL  345 (431)
T ss_dssp             CCCEEEEEEEEESCCT---T---EEEEBSSSSSEEEEEEEC----S-SSEEEEEE-EEETTTCCTTC-H---HHHHHHHH
T ss_pred             CcceEEEEEEECCCCc---C---ceEcCCCCEEEEEeCcCC----C-CCCeEEEE-EeccccCCCCC-H---HHHHHHHH
Confidence            7778899999988752   1   222221211223433211    0 12333322 33333333333 2   24567788


Q ss_pred             hhccCCCCCceeeeEEeecCCC------ccccCCCCc-CCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHH
Q 017658          248 KCIKDFSTATVMDHKIRRFPKS------LTHFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR  320 (368)
Q Consensus       248 ~~~p~~~~~~i~~~~~~~~~~~------~~~~~pg~~-~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~  320 (368)
                      +++|+..   ++.....+|...      +..+.||.. ..++....|.++|||||+.++..++ ++|+||+.||.+||++
T Consensus       346 ~~~~~~~---~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~-g~~~GA~~sg~raa~~  421 (431)
T 3k7m_X          346 YYLPEVE---VLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFP-GYIEGALETAECAVNA  421 (431)
T ss_dssp             HHCTTCE---EEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSST-TSHHHHHHHHHHHHHH
T ss_pred             HhcCCCC---ccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCC-eEehHHHHHHHHHHHH
Confidence            8888653   555555667432      333455653 2345555788999999999987777 7999999999999999


Q ss_pred             HHHHh
Q 017658          321 VVDYL  325 (368)
Q Consensus       321 Il~~~  325 (368)
                      |+...
T Consensus       422 i~~~~  426 (431)
T 3k7m_X          422 ILHSH  426 (431)
T ss_dssp             HHHC-
T ss_pred             HHhhh
Confidence            99753

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.83  E-value=2.1e-20  Score=182.72  Aligned_cols=293  Identities=12%  Similarity=0.036  Sum_probs=195.5

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHH---------HHHHHHHhhcC-----CCcceeeec-
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATL---------GILYFIILAHQ-----KNFDLVWCR-   81 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~---------~~l~~~~~~~~-----~~~~~~~~~-   81 (368)
                      .+++|+.+|+.+. +++++++.++.|++...|+.+++++|+.++.         ..+...+....     ....+.||. 
T Consensus       134 ~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~  212 (484)
T 4dsg_A          134 EPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQR  212 (484)
T ss_dssp             SCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESS
T ss_pred             CCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecC
Confidence            5789999999984 8899999999999999999999999986422         22222221111     112334554 


Q ss_pred             CCcchhhhHHHHHHHHHcCCEEecc--ceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhc--cccCc
Q 017658           82 GTLREKIFEPWMDSMRTRGCEFLDG--RRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS--ILCNR  157 (368)
Q Consensus        82 GG~~~~L~~~l~~~l~~~G~~i~~~--t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~--~l~~~  157 (368)
                      ||+ ..|+++|++.+.+.  +|+++  ++|++|..++  ++|+  ..+|+++.||+||+|+|++.+.+++.+.  .+ ++
T Consensus       213 gG~-~~l~~~la~~l~~~--~i~~~~~~~V~~I~~~~--~~v~--~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~-~~  284 (484)
T 4dsg_A          213 GGT-GIIYQAIKEKLPSE--KLTFNSGFQAIAIDADA--KTIT--FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKG-YD  284 (484)
T ss_dssp             SCT-HHHHHHHHHHSCGG--GEEECGGGCEEEEETTT--TEEE--ETTSCEEECSEEEECSCHHHHHHHEECSSCTT-GG
T ss_pred             CCH-HHHHHHHHhhhhhC--eEEECCCceeEEEEecC--CEEE--ECCCCEEECCEEEECCCHHHHHHHhhccCCCC-CH
Confidence            896 57999999888652  89999  5699999876  5442  2347789999999999999999998651  12 13


Q ss_pred             hhHHhhhccCccceEEEEEEecCCCCCC-CCCceeecCCCCcc-ceeeeccccccccCCCCCeEEEEEeecCCCCCCCCH
Q 017658          158 EEFLKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGFGDSLA-WTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKD  235 (368)
Q Consensus       158 ~~~~~i~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  235 (368)
                      ...+.+..+.+.++.++.+.++++.... .+.+.++-.+.... ..+...++..+...+++.+++.+.+... ...+.++
T Consensus       285 ~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~-~~~~~~d  363 (484)
T 4dsg_A          285 EWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES-KYKPVNH  363 (484)
T ss_dssp             GHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB-TTBCCCT
T ss_pred             HHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC-cCCcCCH
Confidence            4556778889999999999998864211 12222221221110 1112223333333334445554444322 3345788


Q ss_pred             HHHHHHHHHHHhhhccCCCC-CceeeeEEeecCCCccccCCCCcCC----CCCCCCCCCceEEeccccccCCCCccchHH
Q 017658          236 DQVVAKAVSYLSKCIKDFST-ATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGSWSQERS  310 (368)
Q Consensus       236 ~e~~~~~~~~l~~~~p~~~~-~~i~~~~~~~~~~~~~~~~pg~~~~----~p~~~~~~~~L~laGd~~~~~~~~~~~egA  310 (368)
                      +++++.++++|.++. .+.. ..+...++.+|++++|.|.+|....    +.... .. ||+++|.+-.-.|+...|++|
T Consensus       364 ~~l~~~a~~~L~~~~-~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~-~~-~l~~~Gr~g~~~y~v~~~d~~  440 (484)
T 4dsg_A          364 STLIEDCIVGCLASN-LLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELM-SR-CIYSRGRFGAWRYEVGNQDHS  440 (484)
T ss_dssp             TSHHHHHHHHHHHTT-SCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHH-HT-TEEECSTTTTCCGGGCSHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHH-hC-CcEeecCCcccccCCCChHHH
Confidence            999999999999984 3332 2355567788999999999886432    11111 23 999999865433432379999


Q ss_pred             hHHHHHHHHHHH
Q 017658          311 YVTGLEAANRVV  322 (368)
Q Consensus       311 ~~Sg~~aA~~Il  322 (368)
                      +.||+.||+.|+
T Consensus       441 i~sg~~aa~~i~  452 (484)
T 4dsg_A          441 FMQGVEAIDHVL  452 (484)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999999996

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.82  E-value=1.1e-18  Score=171.14  Aligned_cols=288  Identities=14%  Similarity=0.053  Sum_probs=176.0

Q ss_pred             hhccCccHHHHHHHcC-CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHH
Q 017658           15 RKYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM   93 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~   93 (368)
                      ..+|++|+.+|+++.+ ++....+.+.+. +......   ..+....+....  ....  ......+.||+ ..|+++|+
T Consensus       178 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~--~~~~--~~~~~~~~gG~-~~l~~~l~  248 (498)
T 2iid_A          178 NKYDTYSTKEYLIKEGDLSPGAVDMIGDL-LNEDSGY---YVSFIESLKHDD--IFAY--EKRFDEIVDGM-DKLPTAMY  248 (498)
T ss_dssp             HHHTTSBHHHHHHHTSCCCHHHHHHHHHH-TTCGGGT---TSBHHHHHHHHH--HHTT--CCCEEEETTCT-THHHHHHH
T ss_pred             HHhhhhhHHHHHHHccCCCHHHHHHHHHh-cCcccch---hHHHHHHHHHHh--cccc--CcceEEeCCcH-HHHHHHHH
Confidence            4578899999999865 466655433221 1100000   011111111111  1111  22334668996 57999999


Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce----EEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCc
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS  168 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~----~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~  168 (368)
                      +.+..   +|+++++|++|..++  ++|. |++. |+    +++||+||+|+|+..+.++...+.++ ....++++.+.+
T Consensus       249 ~~l~~---~i~~~~~V~~I~~~~--~~v~-v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp-~~~~~ai~~l~~  321 (498)
T 2iid_A          249 RDIQD---KVHFNAQVIKIQQND--QKVT-VVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLL-PKKAHALRSVHY  321 (498)
T ss_dssp             HHTGG---GEESSCEEEEEEECS--SCEE-EEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCC-HHHHHHHHHCCE
T ss_pred             Hhccc---ccccCCEEEEEEECC--CeEE-EEEecCCcccceEEeCEEEECCChHHHhheecCCCCC-HHHHHHHHhCCC
Confidence            88764   899999999999876  5554 5543 43    48999999999999887765444443 455678889999


Q ss_pred             cceEEEEEEecCCCCCCCCC-ceeecCCCCccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHHH
Q 017658          169 IDVVSVKLWFDKKVTVPNVS-NACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSY  245 (368)
Q Consensus       169 ~~~~~v~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~~  245 (368)
                      .+..++.+.|++++|..... ..+...+.+..+.+++ +..   .+ .+..++.....  .+..|..++++++.+.++++
T Consensus       322 ~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-s~~---~p-~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~  396 (498)
T 2iid_A          322 RSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYP-NHN---FT-NGVGVIIAYGIGDDANFFQALDFKDCADIVFND  396 (498)
T ss_dssp             ECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECC-SSC---CT-TSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCccCCCccCCcccCCCCcceEEEC-CCC---CC-CCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHH
Confidence            88999999999988743211 0110011122222222 111   11 23344433222  22346678899999999999


Q ss_pred             HhhhccCCCCC---ceeeeEEeecCCCccccCCCCcCC---------CCCCCCCCCceEEeccccccCCCCccchHHhHH
Q 017658          246 LSKCIKDFSTA---TVMDHKIRRFPKSLTHFFPGSYKY---------MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVT  313 (368)
Q Consensus       246 l~~~~p~~~~~---~i~~~~~~~~~~~~~~~~pg~~~~---------~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~S  313 (368)
                      |+++++-..+.   ......+.+|...  .|..|++..         ++...++.+||||||++++..+  ++|+||+.|
T Consensus       397 L~~~~g~~~~~~~~~~~~~~~~~W~~~--p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~~--g~~~GAi~S  472 (498)
T 2iid_A          397 LSLIHQLPKKDIQSFCYPSVIQKWSLD--KYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH--GWIDSTIKS  472 (498)
T ss_dssp             HHHHHTCCHHHHHHHEEEEEEEEGGGC--TTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSSS--SCHHHHHHH
T ss_pred             HHHHcCCChhhhhhhcCccEEEecCCC--CCCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccCC--cCHHHHHHH
Confidence            99999622110   0122345567543  223343321         1122357899999999997544  589999999


Q ss_pred             HHHHHHHHHHHhCC
Q 017658          314 GLEAANRVVDYLGD  327 (368)
Q Consensus       314 g~~aA~~Il~~~~~  327 (368)
                      |.+||++|++.++.
T Consensus       473 G~raA~~i~~~l~~  486 (498)
T 2iid_A          473 GLRAARDVNLASEN  486 (498)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999863

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.81  E-value=7.4e-19  Score=177.94  Aligned_cols=226  Identities=18%  Similarity=0.215  Sum_probs=152.0

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C------CeEEecCEEEEeeChhhHHHhh--
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------KETYSAGAVVLAVGISTLQELI--  149 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~------g~~~~ad~VV~a~p~~~l~~ll--  149 (368)
                      ...||+ +.|+++|++     +.+|++|++|++|..++  ++|+ |++ +      +++++||+||+|+|+..++++.  
T Consensus       395 ~~~gG~-~~l~~~La~-----~l~I~l~~~V~~I~~~~--~~v~-V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~  465 (662)
T 2z3y_A          395 TVRNGY-SCVPVALAE-----GLDIKLNTAVRQVRYTA--SGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA  465 (662)
T ss_dssp             EETTCT-THHHHHHTT-----TCEEETTEEEEEEEEET--TEEE-EEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred             eecCcH-HHHHHHHHh-----cCceecCCeEEEEEECC--CcEE-EEEeecccCCCCeEEEeCEEEECCCHHHHhcccCc
Confidence            457896 579998874     56899999999999987  4454 443 2      3579999999999999998742  


Q ss_pred             --hhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecC-CC-----CccceeeeccccccccCCCCCeEEE
Q 017658          150 --KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF-GD-----SLAWTFFDLNKIYDEHKDDSATVIQ  221 (368)
Q Consensus       150 --~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~d~s~~~~~~~~~~~~v~~  221 (368)
                        ..+.++ ....++++.+.+.+..++.+.|++++|... .. .++. ..     ...+.+++..         +..++.
T Consensus       466 i~f~P~LP-~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~-~~-~~G~l~~~~~~~~~~~~~~~~~---------~~~vL~  533 (662)
T 2z3y_A          466 VQFVPPLP-EWKTSAVQRMGFGNLNKVVLCFDRVFWDPS-VN-LFGHVGSTTASRGELFLFWNLY---------KAPILL  533 (662)
T ss_dssp             SEEESCCC-HHHHHHHHHSEECCCEEEEEECSSCCSCTT-CS-EEEECCSSSTTTTEEEEEECCS---------SSSEEE
T ss_pred             eEEcCCCC-HHHHHHHHhCCccceeEEEEEcCcccccCC-CC-ceeeecCCCCCCCceeEEEeCC---------CCCEEE
Confidence              223342 345678889999999999999999998532 12 2221 10     1111122211         122333


Q ss_pred             EEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCC------ccccCCCCcCC-------------
Q 017658          222 ADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYKY-------------  280 (368)
Q Consensus       222 ~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~------~~~~~pg~~~~-------------  280 (368)
                      ..+.  .+..+..++++++++.++++|+++|+.....++....+.+|..+      +..+.||....             
T Consensus       534 ~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~  613 (662)
T 2z3y_A          534 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGP  613 (662)
T ss_dssp             EEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC--
T ss_pred             EEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCcccc
Confidence            2222  12335678999999999999999998643235667777788654      22233443210             


Q ss_pred             -CCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          281 -MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       281 -~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                       +|...++.++|||||++++..++ ++|+||+.||++||++|++.++
T Consensus       614 ~~~~~~~~~grl~FAGe~ts~~~~-g~v~GAi~SG~raA~~i~~~~~  659 (662)
T 2z3y_A          614 SIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQFL  659 (662)
T ss_dssp             -------CCCCEEECSGGGCTTST-TSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCCCcEEEEeccccCCCC-cCHHHHHHHHHHHHHHHHHHcc
Confidence             11123456899999999987677 7999999999999999999876

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.80  E-value=2.4e-18  Score=177.03  Aligned_cols=227  Identities=18%  Similarity=0.199  Sum_probs=154.9

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C------CeEEecCEEEEeeChhhHHHhh--
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------KETYSAGAVVLAVGISTLQELI--  149 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~------g~~~~ad~VV~a~p~~~l~~ll--  149 (368)
                      ...||+ +.|+++|++     +.+|++|++|++|..++  ++|. |++ +      +++++||+||+|+|+.++++++  
T Consensus       566 ~~~gG~-~~L~~aLa~-----~l~I~Lnt~V~~I~~~~--~gV~-V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~  636 (852)
T 2xag_A          566 TVRNGY-SCVPVALAE-----GLDIKLNTAVRQVRYTA--SGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA  636 (852)
T ss_dssp             EETTCT-THHHHHHTT-----TCCEECSEEEEEEEEET--TEEE-EEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred             EecCcH-HHHHHHHHh-----CCCEEeCCeEEEEEEcC--CcEE-EEEeecccCCCCeEEECCEEEECCCHHHHHhhhcc
Confidence            457997 579998875     45799999999999987  4454 443 2      3579999999999999998742  


Q ss_pred             --hhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCC------CCccceeeeccccccccCCCCCeEEE
Q 017658          150 --KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVIQ  221 (368)
Q Consensus       150 --~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~s~~~~~~~~~~~~v~~  221 (368)
                        ..+.++ ....++|..+.+.++.++.+.|++++|.. ... .+++.      ....+.+++..      .  .. ++.
T Consensus       637 I~F~P~LP-~~k~~AI~~l~~g~v~KV~L~F~~~fW~~-~~~-~fG~l~~~~~~~~~l~~~~~~~------~--~p-vLl  704 (852)
T 2xag_A          637 VQFVPPLP-EWKTSAVQRMGFGNLNKVVLCFDRVFWDP-SVN-LFGHVGSTTASRGELFLFWNLY------K--AP-ILL  704 (852)
T ss_dssp             SEEESCCC-HHHHHHHHHSEECCCEEEEEECSSCCSCT-TCC-EEEECCSSSTTTTTTCEEEECS------S--SS-EEE
T ss_pred             cccCCCCC-HHHHHHHHcCCccceEEEEEEcCCcccCC-CCC-eeeeeccccCCCCceEEEecCC------C--CC-EEE
Confidence              223342 33456788999989999999999998853 212 22211      11112233321      1  22 333


Q ss_pred             EEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCC------ccccCCCCcCC-------------
Q 017658          222 ADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYKY-------------  280 (368)
Q Consensus       222 ~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~------~~~~~pg~~~~-------------  280 (368)
                      ..+.  .+..+..++++++++.++++|.++|+.....++....+.+|..+      +..+.||....             
T Consensus       705 ~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~  784 (852)
T 2xag_A          705 ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGP  784 (852)
T ss_dssp             EEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCC
T ss_pred             EEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCcccccc
Confidence            2222  22335568899999999999999998643235667777788654      22334553211             


Q ss_pred             -CCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          281 -MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       281 -~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                       +|....+.++|||||++++..++ ++|+||+.||.+||++|++.+..
T Consensus       785 ~~p~~~~~~grL~FAGE~Ts~~~~-gtveGAi~SG~RAA~~Il~~l~~  831 (852)
T 2xag_A          785 SIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQFLG  831 (852)
T ss_dssp             SSTTCCCCCCCEEECSGGGCTTST-TSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccCCCCcEEEEehhHhCCCC-cCHHHHHHHHHHHHHHHHHHhhC
Confidence             11223456899999999987677 79999999999999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.79  E-value=7.3e-19  Score=172.04  Aligned_cols=233  Identities=10%  Similarity=0.102  Sum_probs=155.8

Q ss_pred             ceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C---eEEecCEEEEeeChhhHHHhhhh
Q 017658           76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K---ETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        76 ~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g---~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      ...+++||+ +.|+++|++.+.+  ++|++|++|++|..++  ++|+ |++. |   ++++||+||+|+|+..+.+|.. 
T Consensus       230 ~~~~~~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~-  302 (489)
T 2jae_A          230 MMFTPVGGM-DRIYYAFQDRIGT--DNIVFGAEVTSMKNVS--EGVT-VEYTAGGSKKSITADYAICTIPPHLVGRLQN-  302 (489)
T ss_dssp             SEEEETTCT-THHHHHHHHHHCG--GGEETTCEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECSCHHHHTTSEE-
T ss_pred             cEEeecCCH-HHHHHHHHHhcCC--CeEEECCEEEEEEEcC--CeEE-EEEecCCeEEEEECCEEEECCCHHHHHhCcc-
Confidence            345678996 5799999987753  7899999999999887  5565 5543 4   5799999999999998887765 


Q ss_pred             ccccCchhHHhhhccCccceEEEEEEecCCCCCCC-CCc-eeecCCCCccceeeeccccccccCCCCCeEEEEEeec--C
Q 017658          152 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-VSN-ACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--A  227 (368)
Q Consensus       152 ~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~  227 (368)
                       .++ ....+.++.+.+.+..++++.|++++|... ... .+...+..... ++..+..   +..+.+.++......  +
T Consensus       303 -~l~-~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~~~~-~~~~s~~---~~~~~~~l~~~~~~g~~~  376 (489)
T 2jae_A          303 -NLP-GDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQ-IMFPYDH---YNSDRGVVVAYYSSGKRQ  376 (489)
T ss_dssp             -CCC-HHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESSTTCE-EECCSSS---TTSSCEEEEEEEEETHHH
T ss_pred             -CCC-HHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCCCCceE-EEeCCCC---CCCCCCEEEEEeeCCchh
Confidence             232 445677888889899999999998876322 110 01111112212 1222211   111233443222221  2


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhccC-CCCCceeeeEEeecCCCccccCCCCcCC---------------CCCCCCCCCce
Q 017658          228 NELMPLKDDQVVAKAVSYLSKCIKD-FSTATVMDHKIRRFPKSLTHFFPGSYKY---------------MMRGFTSFPNL  291 (368)
Q Consensus       228 ~~~~~~~~~e~~~~~~~~l~~~~p~-~~~~~i~~~~~~~~~~~~~~~~pg~~~~---------------~p~~~~~~~~L  291 (368)
                      ..|..++++++++.+++.|++++|. +.. ++......+|....  +..|++..               ++...++.+||
T Consensus       377 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~~-~~~~~~~~~W~~~~--~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  453 (489)
T 2jae_A          377 EAFESLTHRQRLAKAIAEGSEIHGEKYTR-DISSSFSGSWRRTK--YSESAWANWAGSGGSHGGAATPEYEKLLEPVDKI  453 (489)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHHCGGGGS-SEEEEEEEEGGGST--TTSCSSCEETTC-------CCHHHHHHTSCBTTE
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHcCcchhh-hccccEEEEcCCCC--CCCCcchhcccccCCCcccchhhHHHHhCCCCcE
Confidence            2366678999999999999999987 543 46665566675442  22232211               11224578999


Q ss_pred             EEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          292 FMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       292 ~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ||||++++. ++ ++++||+.||.+||++|++.++
T Consensus       454 ~faG~~~~~-~~-~~v~gAi~sg~~aA~~i~~~l~  486 (489)
T 2jae_A          454 YFAGDHLSN-AI-AWQHGALTSARDVVTHIHERVA  486 (489)
T ss_dssp             EECSGGGBS-ST-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeEHHhcc-Cc-cHHHHHHHHHHHHHHHHHHHHh
Confidence            999999963 44 6999999999999999998876

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.74  E-value=1.3e-17  Score=170.34  Aligned_cols=228  Identities=17%  Similarity=0.176  Sum_probs=148.8

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh-h-hhcccc
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL-I-KNSILC  155 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l-l-~~~~l~  155 (368)
                      +..+|+ ..|+++|++     |++|+++++|++|..++  ++|+ |++. |++++||+||+|+|+..+++. + ..+.++
T Consensus       528 ~~~~G~-~~l~~aLa~-----gl~I~l~t~V~~I~~~~--~~v~-V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp  598 (776)
T 4gut_A          528 LLTPGY-SVIIEKLAE-----GLDIQLKSPVQCIDYSG--DEVQ-VTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLS  598 (776)
T ss_dssp             ECTTCT-HHHHHHHHT-----TSCEESSCCEEEEECSS--SSEE-EEETTCCEEEESEEEECCCHHHHHTTCSEEESCCC
T ss_pred             EECChH-HHHHHHHHh-----CCcEEcCCeeEEEEEcC--CEEE-EEECCCcEEEcCEEEECCCHHHHhhcccccCCCCC
Confidence            456785 468777753     77999999999999877  4465 6655 668999999999999998752 2 222342


Q ss_pred             CchhHHhhhccCccceEEEEEEecCCCCCCC-CCceeecCCC------CccceeeeccccccccCCCCCeEEEEEeec--
Q 017658          156 NREEFLKVLNLASIDVVSVKLWFDKKVTVPN-VSNACSGFGD------SLAWTFFDLNKIYDEHKDDSATVIQADFYH--  226 (368)
Q Consensus       156 ~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~------~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--  226 (368)
                       ....+++..+.+.++.++.+.|++++|... ....+++...      .....+++.+      +..++.++......  
T Consensus       599 -~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~------p~g~~~vL~~~i~G~~  671 (776)
T 4gut_A          599 -EKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD------PQKKHSVLMSVIAGEA  671 (776)
T ss_dssp             -HHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESC------TTSCSCEEEEEECTHH
T ss_pred             -HHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCC------CCCCceEEEEEecchh
Confidence             445677888888888999999999988432 1111222211      1111122321      11123344333321  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCcc------ccCCCCcC-CCCCCCCC-CCceEEecccc
Q 017658          227 ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTS-FPNLFMAGDWI  298 (368)
Q Consensus       227 ~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~------~~~pg~~~-~~p~~~~~-~~~L~laGd~~  298 (368)
                      +..+.+++++++++.++++|.++||......++...+.+|..+.+      .+.||... ..+....+ .++|||||+++
T Consensus       672 a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~T  751 (776)
T 4gut_A          672 VASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEAT  751 (776)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhh
Confidence            233567899999999999999999864323566667777854421      11223211 01111234 47899999999


Q ss_pred             ccCCCCccchHHhHHHHHHHHHHHH
Q 017658          299 TTRHGSWSQERSYVTGLEAANRVVD  323 (368)
Q Consensus       299 ~~~~~~~~~egA~~Sg~~aA~~Il~  323 (368)
                      +..++ ++|+||+.||.+||++|++
T Consensus       752 s~~~~-gtveGAi~SG~RaA~~Ila  775 (776)
T 4gut_A          752 NRHFP-QTVTGAYLSGVREASKIAA  775 (776)
T ss_dssp             CSSSC-SSHHHHHHHHHHHHHHHHC
T ss_pred             cCCCC-cCHHHHHHHHHHHHHHHHh
Confidence            98777 7999999999999999975

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.72  E-value=8.8e-17  Score=158.39  Aligned_cols=289  Identities=12%  Similarity=0.108  Sum_probs=161.7

Q ss_pred             ccCccHHHHHHHc------CCCHHHHHHHHHHHH---HhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchh
Q 017658           17 YDSITARELFKQF------GCSERLYRNVIGPLV---QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK   87 (368)
Q Consensus        17 ld~~S~~d~l~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~   87 (368)
                      .+++|+.+|+.+.      .+++... .++..++   ...++.+++++|+..++        ....+. ..++.| + +.
T Consensus       136 ~~d~s~~~~l~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~g~~~~~~s~~~~~--------~~~~~~-~~~~~g-~-~~  203 (516)
T 1rsg_A          136 VSDCSFFQLVMKYLLQRRQFLTNDQI-RYLPQLCRYLELWHGLDWKLLSAKDTY--------FGHQGR-NAFALN-Y-DS  203 (516)
T ss_dssp             --CCBHHHHHHHHHHHHGGGSCHHHH-HHHHHHHGGGHHHHTBCTTTSBHHHHC--------CCCSSC-CEEESC-H-HH
T ss_pred             CCCCCHHHHHHHHHHHhhcccCHHHH-HHHHHHHHHHHHHhCCChHHCChHHHH--------hhccCc-chhhhC-H-HH
Confidence            4678999988752      1222211 1222222   22345667777765421        111111 235566 4 67


Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh----------hh-hcccc
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL----------IK-NSILC  155 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l----------l~-~~~l~  155 (368)
                      |+++|++.+.  +++|++|++|++|..+++ +.| .|++. |++++||+||+|+|+..++..          +. .+.+ 
T Consensus       204 l~~~l~~~l~--~~~i~~~~~V~~I~~~~~-~~v-~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~L-  278 (516)
T 1rsg_A          204 VVQRIAQSFP--QNWLKLSCEVKSITREPS-KNV-TVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPL-  278 (516)
T ss_dssp             HHHHHHTTSC--GGGEETTCCEEEEEECTT-SCE-EEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCC-
T ss_pred             HHHHHHHhCC--CCEEEECCEEEEEEEcCC-CeE-EEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCC-
Confidence            9999987765  368999999999998632 444 46665 668999999999999998743          11 1233 


Q ss_pred             CchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCC-C-------------------------------ccceee
Q 017658          156 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-S-------------------------------LAWTFF  203 (368)
Q Consensus       156 ~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~-------------------------------~~~~~~  203 (368)
                      +....++++.+.+.+..++.+.|++++|..... .+.+... +                               ..|. +
T Consensus       279 p~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  356 (516)
T 1rsg_A          279 KPVIQDAFDKIHFGALGKVIFEFEECCWSNESS-KIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWS-Q  356 (516)
T ss_dssp             CHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCS-EEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTS-S
T ss_pred             CHHHHHHHHhCCCCcceEEEEEeCCCCCCCCCC-cEEEeCCCCccchhhcccCcccchhhhccccccccccccccccc-C
Confidence            245567889999999999999999999854322 1211110 0                               0010 0


Q ss_pred             eccccccccCCCCCeEEEEEeecC--CCCCCC--CHHHHHHH---HHHHHhhhcc------CCCCC-------cee--ee
Q 017658          204 DLNKIYDEHKDDSATVIQADFYHA--NELMPL--KDDQVVAK---AVSYLSKCIK------DFSTA-------TVM--DH  261 (368)
Q Consensus       204 d~s~~~~~~~~~~~~v~~~~~~~~--~~~~~~--~~~e~~~~---~~~~l~~~~p------~~~~~-------~i~--~~  261 (368)
                      . +....-+...+..++.......  ..+..+  +++++.+.   +++++.++|+      +....       .++  ..
T Consensus       357 ~-~~~~~~~~~~~~~~L~~~~~g~~a~~~~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~  435 (516)
T 1rsg_A          357 P-LFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNI  435 (516)
T ss_dssp             C-EEEEEHHHHTSCSEEEEEECBTHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEE
T ss_pred             c-eeEEEeeecCCCcEEEEEecchHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCccceE
Confidence            0 0000000001223332222211  112334  67777654   5566655553      33211       122  45


Q ss_pred             EEeecCCCc------cccCCCCcCC--CCCC-CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          262 KIRRFPKSL------THFFPGSYKY--MMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       262 ~~~~~~~~~------~~~~pg~~~~--~p~~-~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ...+|..+.      ..+.||....  .... ..+.++|||||++++..++ ++|+||+.||.+||++|++.++
T Consensus       436 ~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~~~~rl~FAGe~ts~~~~-g~v~GA~~SG~raA~~i~~~~~  508 (516)
T 1rsg_A          436 IVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGA-GCAYGAWESGRREATRISDLLK  508 (516)
T ss_dssp             EECCTTTCTTTTTCCCCCBC----CHHHHHHHHCSSSSEEECSTTSCSTTB-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCCccCCCcCCCCCHHHHHHHhccCCCCcEEEeccccccCCC-ccchhHHHHHHHHHHHHHHHhh
Confidence            556674431      1223343110  0001 1356899999999987677 7999999999999999998875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.71  E-value=4e-17  Score=163.92  Aligned_cols=307  Identities=11%  Similarity=0.028  Sum_probs=174.2

Q ss_pred             hhccCccH---HHHHHHc-CCCHHHHHHHHHHHHHhhhc-CCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhh
Q 017658           15 RKYDSITA---RELFKQF-GCSERLYRNVIGPLVQVGLF-APAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF   89 (368)
Q Consensus        15 ~~ld~~S~---~d~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~   89 (368)
                      .++|++|+   .+|+++. .++ ... .++..+..+..+ .+....|...++...   . ... ......+.||+ +.|+
T Consensus       279 ~~~d~~S~~~~~~~L~~~~~~s-~~~-~~~~~~~~~~gg~~~~~~~S~le~L~~~---~-~~~-~~~~~~i~GG~-~~L~  350 (721)
T 3ayj_A          279 VAFEKGTLPPVDGVLDVDESIS-YYV-ELFGRFGFGTGGFKPLYNISLVEMMRLI---L-WDY-SNEYTLPVTEN-VEFI  350 (721)
T ss_dssp             HHHHHTSSCCGGGTSCHHHHHH-HHH-HHHHHHCSSSSCCGGGTTBBHHHHHHHH---H-TTT-TCEECCSSSST-HHHH
T ss_pred             HhhcccchhHHHHHHHhccccH-HHH-HHHHHHhhccCCCCCccchhHHHHHHHH---h-cCC-ccceeEECCcH-HHHH
Confidence            46677888   8877531 122 112 222221111112 233466766655443   1 211 22345568995 6799


Q ss_pred             HHHHHHHHHcCCEEeccceee--eEEecCCCc------eEEEE-EEC-Ce--EEecCEEEEeeChhhHHHhh-----h--
Q 017658           90 EPWMDSMRTRGCEFLDGRRVT--DFIYDEERC------CISDV-VCG-KE--TYSAGAVVLAVGISTLQELI-----K--  150 (368)
Q Consensus        90 ~~l~~~l~~~G~~i~~~t~V~--~I~~~~~~g------~v~~v-~~~-g~--~~~ad~VV~a~p~~~l~~ll-----~--  150 (368)
                      ++|++.+.. |++|+++++|+  +|..+++ +      .|+ | ... |+  +++||+||+|+|+..+..++     .  
T Consensus       351 ~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~-g~~~~~~~V~-V~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~  427 (721)
T 3ayj_A          351 RNLFLKAQN-VGAGKLVVQVRQERVANACH-SGTASARAQL-LSYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHA  427 (721)
T ss_dssp             HHHHHHHHH-HTTTSEEEEEECEEEEEEEE-CSSSSCCEEE-EEEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCE
T ss_pred             HHHHHhccc-CCceEeCCEEEeeeEEECCC-CCccccceEE-EEEecCCceEEEEcCEEEECCCHHHHhhcccccccccc
Confidence            999998753 68899999999  9998753 3      354 4 333 55  78999999999999986411     1  


Q ss_pred             --------------------hcc-ccC-------chhHHhhhccCccceEEEEEEe-----cCCCCCCCCCc-e-eecCC
Q 017658          151 --------------------NSI-LCN-------REEFLKVLNLASIDVVSVKLWF-----DKKVTVPNVSN-A-CSGFG  195 (368)
Q Consensus       151 --------------------~~~-l~~-------~~~~~~i~~l~~~~~~~v~l~~-----~~~~~~~~~~~-~-~~~~~  195 (368)
                                          .++ +-+       ....+++.++.+.+..|+.+.+     ++++|...... . ..-.+
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~~g~~i~~s~TD  507 (721)
T 3ayj_A          428 ASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQWRGEPIKAVVSD  507 (721)
T ss_dssp             EEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEETTEECCEEEET
T ss_pred             ccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcccccCCCCceeeecC
Confidence                                111 101       2456788999999999999999     88988543111 0 11112


Q ss_pred             CCccce-eeeccccccccCCCCCe-EEEEEeec--CCCC------CCCCH-------HHHHHHHHHHHh--hhccCCC--
Q 017658          196 DSLAWT-FFDLNKIYDEHKDDSAT-VIQADFYH--ANEL------MPLKD-------DQVVAKAVSYLS--KCIKDFS--  254 (368)
Q Consensus       196 ~~~~~~-~~d~s~~~~~~~~~~~~-v~~~~~~~--~~~~------~~~~~-------~e~~~~~~~~l~--~~~p~~~--  254 (368)
                      ...... ++...+.. .+.+++.. ++..+...  +..|      ..+++       +++++.+++++.  +++|+..  
T Consensus       508 ~~~r~~~~~p~p~~~-d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~~~~p~~~~~  586 (721)
T 3ayj_A          508 SGLAASYVVPSPIVE-DGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGASNA  586 (721)
T ss_dssp             TTTEEEEEEECSCC-----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCEECCTTCSSC
T ss_pred             CCcceEEEeccCccc-ccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhhccCcccccc
Confidence            122111 11100000 11112233 44332221  1122      22333       344899999999  8898754  


Q ss_pred             ---------C-CceeeeEEeecCCC-----ccccCCCCc-------CCC--CCCCCCCCceEEeccccccCCCCccchHH
Q 017658          255 ---------T-ATVMDHKIRRFPKS-----LTHFFPGSY-------KYM--MRGFTSFPNLFMAGDWITTRHGSWSQERS  310 (368)
Q Consensus       255 ---------~-~~i~~~~~~~~~~~-----~~~~~pg~~-------~~~--p~~~~~~~~L~laGd~~~~~~~~~~~egA  310 (368)
                               . ....+.....|...     +..+.||..       .+.  .....+.++||||||+++ .++ +++|||
T Consensus       587 ~~~~~~~l~~~~~~~~~~~~dW~~dps~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~fAGe~~S-~~~-GWieGA  664 (721)
T 3ayj_A          587 QPWWFYQLLAEARTADRFVFDWTTNKTAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDSYS-HLG-GWLEGA  664 (721)
T ss_dssp             EECHHHHHHHTSCSTTCEEEEGGGSTTSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEEECSGGGS-SCT-TSHHHH
T ss_pred             ccchhhhhhhhcccCceEEEeCCCCCCCCccccCCCccchhhhhhhhhhhhccccCCCCCEEEeehhhc-cCC-ceehHH
Confidence                     1 00122344456322     112345541       111  111235689999999998 455 799999


Q ss_pred             hHHHHHHHHHHHHHhCCCCcccccc
Q 017658          311 YVTGLEAANRVVDYLGDGSFSKIIP  335 (368)
Q Consensus       311 ~~Sg~~aA~~Il~~~~~~~~~~~~~  335 (368)
                      +.||.+||..|...++.+.+.|..+
T Consensus       665 l~Sa~~Aa~~i~~~~~~~~~~~~~~  689 (721)
T 3ayj_A          665 FMSALNAVAGLIVRANRGDVSALST  689 (721)
T ss_dssp             HHHHHHHHHHHHHHHTTTCGGGBCT
T ss_pred             HHHHHHHHHHHHHHhcCCCCcccCc
Confidence            9999999999999999866666544

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.67  E-value=1.9e-16  Score=151.94  Aligned_cols=276  Identities=13%  Similarity=0.148  Sum_probs=160.5

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH-HhhcCCCcceeeecCCcchhhhHHHHH
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-ILAHQKNFDLVWCRGTLREKIFEPWMD   94 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~-~~~~~~~~~~~~~~GG~~~~L~~~l~~   94 (368)
                      +.+.+|+.+|+++.+.+ .+.+.+..|++...++ ++++.|+..++..+... ++....+. .....||+ +.++++|.+
T Consensus       139 ~~~~~s~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~~l~~~l~~  214 (424)
T 2b9w_A          139 EDLMLPFDEFLALNGCE-AARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKGD-LWTWADGT-QAMFEHLNA  214 (424)
T ss_dssp             GGGGSBHHHHHHHTTCG-GGHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHTC-CBCCTTCH-HHHHHHHHH
T ss_pred             hhhccCHHHHHHhhCcH-HHHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCCc-eEEeCChH-HHHHHHHHH
Confidence            34579999999998775 4667777887765554 67889988765443221 11100111 12457885 679999986


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEEE
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV  174 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v  174 (368)
                      .+   +.+|+++++|++|..++  ++++ |++++++++||+||+|+|+..+.++++..    +..++.+..+.+.+.. +
T Consensus       215 ~l---~~~v~~~~~V~~i~~~~--~~v~-v~~~~g~~~ad~Vv~a~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~-~  283 (424)
T 2b9w_A          215 TL---EHPAERNVDITRITRED--GKVH-IHTTDWDRESDVLVLTVPLEKFLDYSDAD----DDEREYFSKIIHQQYM-V  283 (424)
T ss_dssp             HS---SSCCBCSCCEEEEECCT--TCEE-EEESSCEEEESEEEECSCHHHHTTSBCCC----HHHHHHHTTCEEEEEE-E
T ss_pred             hh---cceEEcCCEEEEEEEEC--CEEE-EEECCCeEEcCEEEECCCHHHHhhccCCC----HHHHHHHhcCCcceeE-E
Confidence            65   46899999999999876  5565 77775569999999999999887665432    2233344555554432 2


Q ss_pred             EEEecCCCCCCCCCceeecCC--C-CccceeeeccccccccCCCCCeEEEEEee-cCCCCCCCCHHHHHHHHHHHHhhhc
Q 017658          175 KLWFDKKVTVPNVSNACSGFG--D-SLAWTFFDLNKIYDEHKDDSATVIQADFY-HANELMPLKDDQVVAKAVSYLSKCI  250 (368)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~e~~~~~~~~l~~~~  250 (368)
                      .+.+.+... .  ...++...  . ...+.+++....    ++.+..++..... ....+.+.+++++.+.+++.|.++.
T Consensus       284 ~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~  356 (424)
T 2b9w_A          284 DACLVKEYP-T--ISGYVPDNMRPERLGHVMVYYHRW----ADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFG  356 (424)
T ss_dssp             EEEEESSCC-S--SEEECGGGGSGGGTTSCCEEEECC----TTCTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccCC-c--ccccccCCCCCcCCCcceEEeeec----CCCCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcC
Confidence            223333321 1  11121110  0 111222222211    1112233322222 2234556778899999999999854


Q ss_pred             cCCCCCceeeeEEeecCC----CccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHH
Q 017658          251 KDFSTATVMDHKIRRFPK----SLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  322 (368)
Q Consensus       251 p~~~~~~i~~~~~~~~~~----~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il  322 (368)
                      +...  +++..  ..|..    +...+..|... ++...++.+||||||+|+.  +  +.+|+|+.||+.||+.|+
T Consensus       357 ~~~~--~~~~~--~~w~~~p~~~~~~~~~G~~~-~~~~~~~~~~l~~aG~~~~--~--g~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          357 HPVE--KIIEE--QTWYYFPHVSSEDYKAGWYE-KVEGMQGRRNTFYAGEIMS--F--GNFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             CCEE--EEEEE--EEEEEEEECCHHHHHTTHHH-HHHHTTTGGGEEECSGGGS--C--SSHHHHHHHHHHHHHHHT
T ss_pred             Cccc--ccccc--cceeeeeccCHHHHhccHHH-HHHHHhCCCCceEeccccc--c--ccHHHHHHHHHHHHHHhc
Confidence            4322  23221  12221    11122223221 1112245689999999995  4  479999999999999885

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.37  E-value=1.2e-10  Score=112.49  Aligned_cols=121  Identities=14%  Similarity=0.132  Sum_probs=84.0

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHh----hhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHH
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQV----GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPW   92 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l   92 (368)
                      ++.+|+.+|+++++.++.+.+ ++...+..    .+...|...+...+...+...  .......+.+++||+ ..|+++|
T Consensus       173 ~~~~s~~~~l~~~~~~~~l~~-~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~--~~~~~~~~~~p~gG~-~~l~~al  248 (453)
T 2bcg_G          173 LDKNTMDEVYYKFGLGNSTKE-FIGHAMALWTNDDYLQQPARPSFERILLYCQSV--ARYGKSPYLYPMYGL-GELPQGF  248 (453)
T ss_dssp             TTTSBHHHHHHHTTCCHHHHH-HHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHH--HHHSSCSEEEETTCT-THHHHHH
T ss_pred             cccCCHHHHHHHhCCCHHHHH-HHHHHHHhccCccccCCchHHHHHHHHHHHHHH--HhhcCCceEeeCCCH-HHHHHHH
Confidence            578999999999888888665 43321110    011223333332222221111  111122345889996 5799999


Q ss_pred             HHHHHHcCCEEeccceeeeEEec--CCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           93 MDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        93 ~~~l~~~G~~i~~~t~V~~I~~~--~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ++.++++|++|+++++|++|..+  +  +++++|+++|+++.||+||+|++++
T Consensus       249 ~~~~~~~G~~i~~~~~V~~i~~~~~~--~~~~~V~~~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          249 ARLSAIYGGTYMLDTPIDEVLYKKDT--GKFEGVKTKLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             HHHHHHTTCEEECSCCCCEEEEETTT--TEEEEEEETTEEEECSCEEECGGGC
T ss_pred             HHHHHHcCCEEECCCEEEEEEEECCC--CeEEEEEECCeEEECCEEEECCCcc
Confidence            99999999999999999999987  5  7788888888899999999999986

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.30  E-value=3.7e-10  Score=108.51  Aligned_cols=125  Identities=10%  Similarity=0.096  Sum_probs=90.2

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHh--hcCCCcceeeecCCcchhhhHHHH
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTLREKIFEPWM   93 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~--~~~~~~~~~~~~GG~~~~L~~~l~   93 (368)
                      +++.+|+.+|+++++.++.+.+ ++...+....+.++.+.++...+..+..+..  ...+...+.+++||+ ..|+++|+
T Consensus       164 ~~~~~s~~~~l~~~~~~~~l~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~g~~~~~~p~gG~-~~l~~~l~  241 (433)
T 1d5t_A          164 DPQNTSMRDVYRKFDLGQDVID-FTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGL-GELPQGFA  241 (433)
T ss_dssp             CTTTSBHHHHHHHTTCCHHHHH-HHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSSSCCSEEEETTCT-THHHHHHH
T ss_pred             ccccCCHHHHHHHcCCCHHHHH-HHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCcCH-HHHHHHHH
Confidence            4678999999999888887665 4332211122234556565544333333321  111123356899996 57999999


Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +.++++|++|+++++|++|..++  +++++|+.+|+++.||+||+|+++..
T Consensus       242 ~~~~~~G~~i~~~~~V~~I~~~~--~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          242 RLSAIYGGTYMLNKPVDDIIMEN--GKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             HHHHHHTCCCBCSCCCCEEEEET--TEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             HHHHHcCCEEECCCEEEEEEEeC--CEEEEEEECCeEEECCEEEECCCCCc
Confidence            99999999999999999999877  77888888899999999999999874

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.24  E-value=5.9e-09  Score=103.57  Aligned_cols=153  Identities=12%  Similarity=0.060  Sum_probs=100.7

Q ss_pred             chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhh
Q 017658           11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKI   88 (368)
Q Consensus        11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L   88 (368)
                      ...|..++.+|+.+||++++.++.++..+...+  +++.  .+..++...+..+..++  ++.-+...+.|+.||++ .|
T Consensus       306 p~~~~~~d~~S~~d~L~~~~ls~~L~~~L~~~l--al~~--~~~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~g-~L  380 (650)
T 1vg0_A          306 PDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSI--AMTS--ETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQG-EL  380 (650)
T ss_dssp             HHHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHT--TC----CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTT-HH
T ss_pred             hHHHhhhccCCHHHHHHHhCCCHHHHHHHHHHH--hccC--CCCCchhHHHHHHHHHHHHHHhhccCceEEeCCchh-HH
Confidence            345678899999999999999998765443321  2222  22234444433333332  12222235678999975 69


Q ss_pred             hHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccC
Q 017658           89 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA  167 (368)
Q Consensus        89 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~  167 (368)
                      +++|++.++.+||+|+++++|++|.+++++|++++|++. |+++.||+||++.  ..    ++..      ..   ..+.
T Consensus       381 ~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~--~~----lp~~------~~---~~~~  445 (650)
T 1vg0_A          381 PQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED--SY----LSEN------TC---SRVQ  445 (650)
T ss_dssp             HHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG--GG----BCTT------TT---TTCC
T ss_pred             HHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh--hh----cCHh------Hh---cccc
Confidence            999999999999999999999999987633578888865 8899999999932  22    1211      10   1123


Q ss_pred             ccceEEEEEEecCCCC
Q 017658          168 SIDVVSVKLWFDKKVT  183 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~  183 (368)
                      +..+..+.+.+++++.
T Consensus       446 ~~~v~R~i~i~~~pi~  461 (650)
T 1vg0_A          446 YRQISRAVLITDGSVL  461 (650)
T ss_dssp             CEEEEEEEEEESSCSS
T ss_pred             ccceEEEEEEecCCCC
Confidence            3456667777887754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.22  E-value=5.5e-11  Score=114.65  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhhHHHHH
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMD   94 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L~~~l~~   94 (368)
                      ++++|+.+|++++++++.+.+.++.+++... ..++.+.++...+..+..+.  +..-+.+.+.||+||++ .|+++|++
T Consensus       187 l~~~s~~e~l~~~gls~~l~~fl~~alaL~~-~~~~~~~~a~~~l~ri~~y~~Sl~~yg~s~~~yp~gG~~-~L~~aL~r  264 (475)
T 3p1w_A          187 PYKLTMLEIYKHFNLCQLTIDFLGHAVALYL-NDDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGLG-GIPEGFSR  264 (475)
T ss_dssp             TTTSBHHHHHHHTTCCHHHHHHHHHHTSCCS-SSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTT-HHHHHHHH
T ss_pred             ccCCCHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCcccCCHHHHHHHHHHHHHHHhhcCCCceEEECCCHH-HHHHHHHH
Confidence            5689999999999999998765434322111 12344567766665544432  12223456789999975 69999999


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .++.+|++|+++++|++|..+++ |++++|++. |+++.||+||++++..
T Consensus       265 ~~~~~Gg~i~l~t~V~~I~~d~~-g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          265 MCAINGGTFMLNKNVVDFVFDDD-NKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHC--CEESSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHcCCEEEeCCeEEEEEEecC-CeEEEEEECCCcEEECCEEEECCCcc
Confidence            99999999999999999998333 788999987 5789999999998764

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.15  E-value=3.8e-12  Score=121.08  Aligned_cols=135  Identities=9%  Similarity=-0.097  Sum_probs=92.0

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC-Ccce-eeecCCcchhhhHHHHH
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCRGTLREKIFEPWMD   94 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~-~~~~-~~~~GG~~~~L~~~l~~   94 (368)
                      .+.+|+.+|+.+ ++++++++.++.|++...++.+++++|+..+..+...+...+.. ...+ .+++||+ .+|+++|++
T Consensus       136 ~~~~s~~e~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~-~~l~~~l~~  213 (399)
T 1v0j_A          136 ADAQNLEEKAIS-LIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGY-TAWLQNMAA  213 (399)
T ss_dssp             TC----CCHHHH-HHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHH-HHHHHHHTC
T ss_pred             CCcccHHHHHHH-HHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccH-HHHHHHHHh
Confidence            467899999998 68899999999999999999999999987642110000001100 1123 2789995 679998875


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEE-ecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEE
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-SAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVS  173 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~-~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~  173 (368)
                         +.|++|++|++|++|..    . |       +++ +||+||+|+|++.+.++.             +..+.|.+...
T Consensus       214 ---~~g~~I~l~~~V~~I~~----~-v-------~~~~~aD~VI~t~p~~~l~~~~-------------l~~l~y~s~~~  265 (399)
T 1v0j_A          214 ---DHRIEVRLNTDWFDVRG----Q-L-------RPGSPAAPVVYTGPLDRYFDYA-------------EGRLGWRTLDF  265 (399)
T ss_dssp             ---STTEEEECSCCHHHHHH----H-H-------TTTSTTCCEEECSCHHHHTTTT-------------TCCCCEEEEEE
T ss_pred             ---cCCeEEEECCchhhhhh----h-h-------hhcccCCEEEECCcHHHHHhhh-------------hCCCCcceEEE
Confidence               46889999999999952    2 2       145 799999999999877541             23456666666


Q ss_pred             EEEEecCC
Q 017658          174 VKLWFDKK  181 (368)
Q Consensus       174 v~l~~~~~  181 (368)
                      +.+.++++
T Consensus       266 ~~~~~~~~  273 (399)
T 1v0j_A          266 EVEVLPIG  273 (399)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEccc
Confidence            66777654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.14  E-value=4.2e-11  Score=112.54  Aligned_cols=133  Identities=12%  Similarity=0.020  Sum_probs=95.0

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC-Ccce-eeecCCcchhhhHHHHH
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCRGTLREKIFEPWMD   94 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~-~~~~-~~~~GG~~~~L~~~l~~   94 (368)
                      .+++|+.+|+.+. +++++++.++.|++...++.+|+++|+..+..+.......+.. ...+ .+++||+ ..|+++|++
T Consensus       126 ~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~-~~l~~~l~~  203 (367)
T 1i8t_A          126 KVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGY-TKLIEKMLE  203 (367)
T ss_dssp             CCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCH-HHHHHHHHT
T ss_pred             CCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCH-HHHHHHHhc
Confidence            4689999999985 8899999999999999999999999986542110000001100 1122 3789995 679999875


Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEEE
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV  174 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v  174 (368)
                           |++|++|++|++|.  .  . |        .+.||+||+|+|++.+.++             .+..+.|.+...+
T Consensus       204 -----g~~i~l~~~V~~i~--~--~-v--------~~~~D~VV~a~p~~~~~~~-------------~l~~l~y~s~~~v  252 (367)
T 1i8t_A          204 -----GVDVKLGIDFLKDK--D--S-L--------ASKAHRIIYTGPIDQYFDY-------------RFGALEYRSLKFE  252 (367)
T ss_dssp             -----TSEEECSCCGGGSH--H--H-H--------HTTEEEEEECSCHHHHTTT-------------TTCCCCEEEEEEE
T ss_pred             -----CCEEEeCCceeeec--h--h-h--------hccCCEEEEeccHHHHHHH-------------hhCCCCCceEEEE
Confidence                 68999999999884  2  2 2        2579999999999876533             1234667777777


Q ss_pred             EEEecCCC
Q 017658          175 KLWFDKKV  182 (368)
Q Consensus       175 ~l~~~~~~  182 (368)
                      .+.++++.
T Consensus       253 ~~~~d~~~  260 (367)
T 1i8t_A          253 TERHEFPN  260 (367)
T ss_dssp             EEEESSSC
T ss_pred             EEEecccc
Confidence            77777663

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.12  E-value=4.8e-11  Score=112.88  Aligned_cols=128  Identities=9%  Similarity=-0.016  Sum_probs=91.7

Q ss_pred             ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC-Ccce-eeecCCcchhhhHHHHH
Q 017658           17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCRGTLREKIFEPWMD   94 (368)
Q Consensus        17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~-~~~~-~~~~GG~~~~L~~~l~~   94 (368)
                      .+++|+.+|+.+. +++++++.++.|++...|+.+++++|+..+..+...+...+.. ...+ .+++||+ ..|+++|++
T Consensus       130 ~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~-~~l~~~l~~  207 (384)
T 2bi7_A          130 ADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGY-TQMIKSILN  207 (384)
T ss_dssp             SSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHH-HHHHHHHHC
T ss_pred             CCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCH-HHHHHHHHh
Confidence            4789999999985 8899999999999999999999999987642110000001100 1122 3889995 679999875


Q ss_pred             HHHHcCCEEeccceee-eEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEE
Q 017658           95 SMRTRGCEFLDGRRVT-DFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVS  173 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~-~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~  173 (368)
                         +.|++|++|++|+ +|..                 .||+||+|+|++.+.+++             +..+.|.+...
T Consensus       208 ---~~g~~I~l~~~V~~~i~~-----------------~~d~VI~a~p~~~~~~~~-------------lg~l~y~s~~~  254 (384)
T 2bi7_A          208 ---HENIKVDLQREFIVEERT-----------------HYDHVFYSGPLDAFYGYQ-------------YGRLGYRTLDF  254 (384)
T ss_dssp             ---STTEEEEESCCCCGGGGG-----------------GSSEEEECSCHHHHTTTT-------------TCCCCEEEEEE
T ss_pred             ---cCCCEEEECCeeehhhhc-----------------cCCEEEEcCCHHHHHHhh-------------cCCCCcceEEE
Confidence               4688999999999 7731                 299999999999877652             13356666666


Q ss_pred             EEEEec
Q 017658          174 VKLWFD  179 (368)
Q Consensus       174 v~l~~~  179 (368)
                      +.+.+|
T Consensus       255 v~~~~d  260 (384)
T 2bi7_A          255 KKFTYQ  260 (384)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            666666

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.79  E-value=1.1e-09  Score=92.14  Aligned_cols=96  Identities=11%  Similarity=0.109  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhhc-cCCCCCceeee--EEeecCCCcc------ccCCCCcC-CCCCCCCCCCceEEeccc
Q 017658          228 NELMPLKDDQVVAKAVSYLSKCI-KDFSTATVMDH--KIRRFPKSLT------HFFPGSYK-YMMRGFTSFPNLFMAGDW  297 (368)
Q Consensus       228 ~~~~~~~~~e~~~~~~~~l~~~~-p~~~~~~i~~~--~~~~~~~~~~------~~~pg~~~-~~p~~~~~~~~L~laGd~  297 (368)
                      ..+..++++++++.++++|.++| |+. . .+...  ...+|....+      .+.||... ..+....+.++|||||++
T Consensus        49 ~~~~~l~~~e~~~~~l~~L~~~~g~~~-~-~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~  126 (181)
T 2e1m_C           49 ARWDSFDDAERYGYALENLQSVHGRRI-E-VFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEH  126 (181)
T ss_dssp             HHHTTSCTTTTHHHHHHHHHHHHCGGG-G-GTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGG
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhCCCc-H-hhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHH
Confidence            34566788999999999999999 665 2 34445  5667854321      22344321 122234577899999999


Q ss_pred             cccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017658          298 ITTRHGSWSQERSYVTGLEAANRVVDYLGD  327 (368)
Q Consensus       298 ~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~  327 (368)
                      ++. ++ ++|+||+.||.+||++|++.++.
T Consensus       127 ts~-~~-g~~eGAl~SG~raA~~i~~~l~~  154 (181)
T 2e1m_C          127 VSL-KH-AWIEGAVETAVRAAIAVNEAPVG  154 (181)
T ss_dssp             GTT-ST-TSHHHHHHHHHHHHHHHHTCCC-
T ss_pred             HcC-Cc-cCHHHHHHHHHHHHHHHHHHhcc
Confidence            985 66 79999999999999999999875

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.76  E-value=1.1e-08  Score=96.52  Aligned_cols=134  Identities=6%  Similarity=-0.011  Sum_probs=95.1

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHh-hcCC-Ccce-eeecCCcchhhhHH
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL-AHQK-NFDL-VWCRGTLREKIFEP   91 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~-~~~~-~~~~-~~~~GG~~~~L~~~   91 (368)
                      ...+++|+.||+.+ .+++++++.++.|++...|+.+++++|+.++. .+..... .+.. ...+ .+|+||+ .+|+++
T Consensus       152 ~~~~~~s~~e~~~~-~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~-Rvp~~~~~d~~yf~~~~qg~P~gGy-~~l~e~  228 (397)
T 3hdq_A          152 KVEQVRTSEDVVVS-KVGRDLYNKFFRGYTRKQWGLDPSELDASVTA-RVPTRTNRDNRYFADTYQAMPLHGY-TRMFQN  228 (397)
T ss_dssp             CCSSCCBHHHHHHH-HHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGG-GSCCCSSCCCBSCCCSEEEEETTCH-HHHHHH
T ss_pred             CCCCCcCHHHHHHH-hcCHHHHHHHHHHHhCchhCCCHHHHHHHHHH-hcCcccccCccchhhhheeccCCCH-HHHHHH
Confidence            35678999999997 68899999999999999999999999987543 2110000 0100 1122 3789996 578888


Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccce
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV  171 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~  171 (368)
                      |+   ++.|++|++|++|+++      +         +.+.+|+||+|+|++.+...             ....+.+.+.
T Consensus       229 l~---~~~g~~V~l~~~v~~~------~---------~~~~~d~vI~T~P~d~~~~~-------------~~g~L~yrsl  277 (397)
T 3hdq_A          229 ML---SSPNIKVMLNTDYREI------A---------DFIPFQHMIYTGPVDAFFDF-------------CYGKLPYRSL  277 (397)
T ss_dssp             HT---CSTTEEEEESCCGGGT------T---------TTSCEEEEEECSCHHHHTTT-------------TTCCCCEEEE
T ss_pred             HH---hccCCEEEECCeEEec------c---------ccccCCEEEEcCCHHHHHHH-------------hcCCCCCceE
Confidence            75   4568999999999843      1         23478999999999776421             1244667766


Q ss_pred             EEEEEEecCCC
Q 017658          172 VSVKLWFDKKV  182 (368)
Q Consensus       172 ~~v~l~~~~~~  182 (368)
                      ..+.+.++++.
T Consensus       278 ~~~~~~~~~~~  288 (397)
T 3hdq_A          278 EFRHETHDTEQ  288 (397)
T ss_dssp             EEEEEEESSSC
T ss_pred             EEEEEEecccc
Confidence            67777787553

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.27  E-value=2.4e-05  Score=72.52  Aligned_cols=57  Identities=12%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C--eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.++++|++|+++++|++|..+++ +.+ .|.++ |  .++.||.||+|++.+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPE-GGF-ELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTT-SSE-EEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC-ceE-EEEECCCceeEEEeCEEEECCCcch
Confidence            46889999999999999999999999998763 434 46665 4  3899999999999974

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.25  E-value=1.4e-05  Score=76.46  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccc---eeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGR---RVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t---~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l  145 (368)
                      ..+++.|.+.++++|++|++++   +|++|..++  +++++|++. |+++.||.||+|++.+.-
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEECCCCEEECCEEEECCCCChh
Confidence            3688999999999999999999   999999876  678888887 558999999999999753

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.22  E-value=0.00012  Score=68.24  Aligned_cols=205  Identities=10%  Similarity=0.048  Sum_probs=110.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  165 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~  165 (368)
                      ..+.+.|.+.+++.|++|+++++|++|..++  +++++|.++++++.||.||+|++.+.-. +.+..... .       .
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~~~g~i~a~~VV~A~G~~s~~-l~~~~g~~-~-------~  217 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKTNKGIIKTGIVVNATNAWANL-INAMAGIK-T-------K  217 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTEEEECSEEEECCGGGHHH-HHHHHTCC-S-------C
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEEC--CEEEEEEECCcEEECCEEEECcchhHHH-HHHHcCCC-c-------C
Confidence            4688889999999999999999999999876  6677788876689999999999987422 32211000 0       0


Q ss_pred             cCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEE-eecCCCCCCCCHHHHHHHHHH
Q 017658          166 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYHANELMPLKDDQVVAKAVS  244 (368)
Q Consensus       166 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~e~~~~~~~  244 (368)
                      +...+.-...+.++ +.........+...+. . ..++     .+ .  +++-++... ......+....+++..+.+++
T Consensus       218 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~-~-~~y~-----~p-~--~~g~~iG~~~~~~~~~~~~~~~~~~~~~l~~  286 (382)
T 1y56_B          218 IPIEPYKHQAVITQ-PIKRGTINPMVISFKY-G-HAYL-----TQ-T--FHGGIIGGIGYEIGPTYDLTPTYEFLREVSY  286 (382)
T ss_dssp             CCCEEEEEEEEEEC-CCSTTSSCSEEEESTT-T-TEEE-----EC-C--SSSCCEEECSCCBSSCCCCCCCHHHHHHHHH
T ss_pred             cCCCeeEeEEEEEc-cCCcccCCCeEEecCC-C-eEEE-----EE-e--CCeEEEecCCCCCCCCCCCCCCHHHHHHHHH
Confidence            11111112222332 2110001011211100 0 1111     11 1  123222210 111112222344667888999


Q ss_pred             HHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC--CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHH
Q 017658          245 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG--FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV  322 (368)
Q Consensus       245 ~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~--~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il  322 (368)
                      .+.++||++.+.++...+.    . +...+++..   |..  ....+|+|++.-+.  +   .++.-|..+|..+|+.|.
T Consensus       287 ~~~~~~p~l~~~~~~~~~~----g-~r~~t~d~~---p~ig~~~~~~~~~~~~G~~--g---~G~~~a~~~g~~la~~i~  353 (382)
T 1y56_B          287 YFTKIIPALKNLLILRTWA----G-YYAKTPDSN---PAIGRIEELNDYYIAAGFS--G---HGFMMAPAVGEMVAELIT  353 (382)
T ss_dssp             HHHHHCGGGGGSEEEEEEE----E-EEEECTTSC---CEEEEESSSBTEEEEECCT--T---CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcCCCCceEEEE----e-ccccCCCCC---cEeccCCCCCCEEEEEecC--c---chHhhhHHHHHHHHHHHh
Confidence            9999999887544443221    1 111223321   211  12357999876444  2   355668889999999998


Q ss_pred             HHh
Q 017658          323 DYL  325 (368)
Q Consensus       323 ~~~  325 (368)
                      ...
T Consensus       354 ~~~  356 (382)
T 1y56_B          354 KGK  356 (382)
T ss_dssp             HSS
T ss_pred             CCC
Confidence            753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.22  E-value=3.9e-05  Score=71.64  Aligned_cols=197  Identities=12%  Similarity=0.040  Sum_probs=109.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  165 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~  165 (368)
                      ..+.+.|.+.+++.|++|+++++|++|..++  +++ .|.++++++.||.||+|++.+.. .+++....          .
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~s~-~l~~~~~~----------~  229 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EAL-FIKTPSGDVWANHVVVASGVWSG-MFFKQLGL----------N  229 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSE-EEEETTEEEEEEEEEECCGGGTH-HHHHHTTC----------C
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC--CEE-EEEcCCceEEcCEEEECCChhHH-HHHHhcCC----------C
Confidence            4588899999999999999999999998876  556 67777668999999999999643 23332110          0


Q ss_pred             cCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Q 017658          166 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY  245 (368)
Q Consensus       166 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~  245 (368)
                      +...+.-...+.++.+.. ..+ ..++.   ...| +.      +.   +++.++.........+....+++..+.+++.
T Consensus       230 ~~~~~~~g~~~~~~~~~~-~~~-~~~~~---~~~~-~~------p~---~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~  294 (382)
T 1ryi_A          230 NAFLPVKGECLSVWNDDI-PLT-KTLYH---DHCY-IV------PR---KSGRLVVGATMKPGDWSETPDLGGLESVMKK  294 (382)
T ss_dssp             CCCEEEEEEEEEEECCSS-CCC-SEEEE---TTEE-EE------EC---TTSEEEEECCCEETCCCCSCCHHHHHHHHHH
T ss_pred             CceeccceEEEEECCCCC-Ccc-ceEEc---CCEE-EE------Ec---CCCeEEEeecccccCCCCCCCHHHHHHHHHH
Confidence            111222223333433211 111 11111   0001 11      10   1233321111111123333456678889999


Q ss_pred             HhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC--CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017658          246 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG--FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD  323 (368)
Q Consensus       246 l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~--~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~  323 (368)
                      +.+++|+++..++...+.-     ...++++..   |..  ....+|+|+++.+.  ++   ++..|..+|..+|+.|+.
T Consensus       295 ~~~~~p~l~~~~~~~~w~g-----~~~~t~d~~---p~ig~~~~~~~l~~~~G~~--g~---G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          295 AKTMLPAIQNMKVDRFWAG-----LRPGTKDGK---PYIGRHPEDSRILFAAGHF--RN---GILLAPATGALISDLIMN  361 (382)
T ss_dssp             HHHHCGGGGGSEEEEEEEE-----EEEECSSSC---CEEEEETTEEEEEEEECCS--SC---TTTTHHHHHHHHHHHHTT
T ss_pred             HHHhCCCcCCCceeeEEEE-----ecccCCCCC---cEeccCCCcCCEEEEEcCC--cc---hHHHhHHHHHHHHHHHhC
Confidence            9999998865344332211     111223321   211  12357899887655  33   345588999999999865


Q ss_pred             H
Q 017658          324 Y  324 (368)
Q Consensus       324 ~  324 (368)
                      .
T Consensus       362 ~  362 (382)
T 1ryi_A          362 K  362 (382)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.20  E-value=0.00016  Score=67.22  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..++..|.+.++++|++|+++++|++|..++  ++ +.|+++++++.||+||+|++++.
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~-~~V~t~~g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVD--GA-WEVRCDAGSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEET--TE-EEEECSSEEEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC--Ce-EEEEeCCCEEEcCEEEECCChhH
Confidence            4688999999999999999999999999877  55 56777767999999999999975

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.07  E-value=0.00027  Score=66.39  Aligned_cols=200  Identities=14%  Similarity=0.073  Sum_probs=108.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhcc
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL  166 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l  166 (368)
                      .+.+.|.+.+++.|++|+++++|++|..++  +++++|.++++++.||.||+|++.+.-. +......          .+
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~s~~-l~~~~g~----------~~  241 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDG--EKVTGVKTTRGTIHAGKVALAGAGHSSV-LAEMAGF----------EL  241 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTCCEEEEEEEECCGGGHHH-HHHHHTC----------CC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeC--CEEEEEEeCCceEECCEEEECCchhHHH-HHHHcCC----------CC
Confidence            588899999999999999999999999876  6677888875589999999999986421 2221100          00


Q ss_pred             CccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeec-CCCCCCCCHHHHHHHHHHH
Q 017658          167 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAVSY  245 (368)
Q Consensus       167 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~e~~~~~~~~  245 (368)
                      ...+.-...+..+ +...... ..+...+  . ..++     .+.   +++.++...... ...+....+.+..+.+++.
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~--~-~~y~-----~p~---~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~  308 (405)
T 2gag_B          242 PIQSHPLQALVSE-LFEPVHP-TVVMSNH--I-HVYV-----SQA---HKGELVMGAGIDSYNGYGQRGAFHVIQEQMAA  308 (405)
T ss_dssp             CEEEEEEEEEEEE-EBCSCCC-SEEEETT--T-TEEE-----EEC---TTSEEEEEEEECSSCCCSSCCCTHHHHHHHHH
T ss_pred             CccccceeEEEec-CCccccC-ceEEeCC--C-cEEE-----EEc---CCCcEEEEeccCCCCccccCCCHHHHHHHHHH
Confidence            1111111112222 2110001 1111100  0 1111     010   123333222221 1112223345677888999


Q ss_pred             HhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017658          246 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       246 l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~-~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~  324 (368)
                      +.+++|.+.+.++...+.- .    ...+++..   |.. ..+.+|+|++..+..  +   ++..|...|..+|+.|...
T Consensus       309 ~~~~~p~l~~~~~~~~w~g-~----~~~t~d~~---p~ig~~~~~~l~~~~G~~g--~---G~~~a~~~g~~la~~i~g~  375 (405)
T 2gag_B          309 AVELFPIFARAHVLRTWGG-I----VDTTMDAS---PIISKTPIQNLYVNCGWGT--G---GFKGTPGAGFTLAHTIAND  375 (405)
T ss_dssp             HHHHCGGGGGCEECEEEEE-E----EEEETTSC---CEEEECSSBTEEEEECCGG--G---CSTTHHHHHHHHHHHHHHT
T ss_pred             HHHhCCccccCCcceEEee-c----cccCCCCC---CEecccCCCCEEEEecCCC--c---hhhHHHHHHHHHHHHHhCC
Confidence            9999998864444433221 1    11223321   211 112578988775552  3   3345888999999999865


Q ss_pred             h
Q 017658          325 L  325 (368)
Q Consensus       325 ~  325 (368)
                      .
T Consensus       376 ~  376 (405)
T 2gag_B          376 E  376 (405)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.01  E-value=0.00016  Score=69.12  Aligned_cols=62  Identities=27%  Similarity=0.379  Sum_probs=51.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEe---------------cCCCceEEEEEECCeEE--ecCEEEEeeChhhHHHh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIY---------------DEERCCISDVVCGKETY--SAGAVVLAVGISTLQEL  148 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~---------------~~~~g~v~~v~~~g~~~--~ad~VV~a~p~~~l~~l  148 (368)
                      ..+...|.+.+++.|++|+++++|++|..               ++  ++|++|.++++++  .||.||+|++++.- +|
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~--~~v~~V~t~~g~i~~~Ad~VV~AtG~~s~-~l  257 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE--ARASAAVLSDGTRVEVGEKLVVAAGVWSN-RL  257 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC--EEEEEEEETTSCEEEEEEEEEECCGGGHH-HH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC--CceEEEEeCCCEEeecCCEEEECCCcCHH-HH
Confidence            36889999999999999999999999987               44  6677888875588  99999999999743 34


Q ss_pred             hh
Q 017658          149 IK  150 (368)
Q Consensus       149 l~  150 (368)
                      ++
T Consensus       258 ~~  259 (448)
T 3axb_A          258 LN  259 (448)
T ss_dssp             HG
T ss_pred             HH
Confidence            44

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.92  E-value=0.00019  Score=72.70  Aligned_cols=56  Identities=13%  Similarity=0.126  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce-EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~-~~~ad~VV~a~p~~~  144 (368)
                      ..++..|.+.+++.|++|+++++|++|..++  +++ .|.++ |+ +++||.||+|++.+.
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v-~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRID--SQW-QLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECS--SSE-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC--CeE-EEEeCCCcEEEECCEEEECCCcch
Confidence            4688999999999999999999999999887  444 56665 55 899999999999973

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.90  E-value=0.00023  Score=72.02  Aligned_cols=56  Identities=14%  Similarity=0.220  Sum_probs=48.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..++..|.+.+++.|++|+++++|++|..++  +++ .|.+. |+++.||.||+|++.+.
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKD--DCW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC--CeE-EEEECCCCEEECCEEEECCCcch
Confidence            4688999999999999999999999999887  554 67775 67899999999999873

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.89  E-value=0.00072  Score=66.73  Aligned_cols=57  Identities=30%  Similarity=0.313  Sum_probs=49.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~  144 (368)
                      ..|+..+.+.++++|++|+++++|++|..++  ++|++|++.    |  .++.||.||.|++++.
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~--g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQ--GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC--CeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            4688999999999999999999999999887  778888763    3  3789999999999975

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.84  E-value=0.00099  Score=62.09  Aligned_cols=201  Identities=10%  Similarity=0.090  Sum_probs=108.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  165 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~  165 (368)
                      ..+.+.|.+.+++.|++|+++++|++|..++  +++ .|.+++++++||.||+|++.+.- .+++....          .
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~-~l~~~~g~----------~  215 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISP--DSV-KIETANGSYTADKLIVSMGAWNS-KLLSKLNL----------D  215 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SCE-EEEETTEEEEEEEEEECCGGGHH-HHGGGGTE----------E
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecC--CeE-EEEeCCCEEEeCEEEEecCccHH-HHhhhhcc----------C
Confidence            3688999999999999999999999999876  444 46777778999999999998643 34433210          0


Q ss_pred             cCccceEEEEEEecCCC--CC---CCCCceeecCCCCccceeeeccccccccCCCCC-eEE-EEEee----cCCCCCCCC
Q 017658          166 LASIDVVSVKLWFDKKV--TV---PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVI-QADFY----HANELMPLK  234 (368)
Q Consensus       166 l~~~~~~~v~l~~~~~~--~~---~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~-~v~-~~~~~----~~~~~~~~~  234 (368)
                      +...+.-...+.++.+.  ..   ..+  .+.... .... ++    ..+.   .++ .++ ..+..    .........
T Consensus       216 ~pl~~~rg~~~~~~~~~~~~~~~~~~p--~~~~~~-~~~~-~y----~~p~---~~g~~~~iG~~~~~~~~~~~~~~~~~  284 (389)
T 2gf3_A          216 IPLQPYRQVVGFFESDESKYSNDIDFP--GFMVEV-PNGI-YY----GFPS---FGGCGLKLGYHTFGQKIDPDTINREF  284 (389)
T ss_dssp             CCCEEEEEEEEEECCCHHHHBGGGTCC--EEEEEE-TTEE-EE----EECB---STTCCEEEEESSCCEECCTTTCCCCT
T ss_pred             CceEEEEEEEEEEecCcccccccccCC--EEEEeC-CCCc-EE----EcCC---CCCCcEEEEEcCCCCccCcccccCcc
Confidence            11122222233343221  00   001  010000 0000 01    0111   122 332 22111    111111112


Q ss_pred             --HHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC--CCCCCceEEeccccccCCCCccchHH
Q 017658          235 --DDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG--FTSFPNLFMAGDWITTRHGSWSQERS  310 (368)
Q Consensus       235 --~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~--~~~~~~L~laGd~~~~~~~~~~~egA  310 (368)
                        .++..+.+++.+.++||.+.. .+...+.     +....+|+..   |..  ....+|+|++..+.  ++   ++.-|
T Consensus       285 ~~~~~~~~~l~~~~~~~~P~l~~-~~~~~w~-----g~r~~t~D~~---p~ig~~~~~~~l~~a~G~~--g~---G~~~a  350 (389)
T 2gf3_A          285 GVYPEDESNLRAFLEEYMPGANG-ELKRGAV-----CMYTKTLDEH---FIIDLHPEHSNVVIAAGFS--GH---GFKFS  350 (389)
T ss_dssp             TSSHHHHHHHHHHHHHHCGGGCS-CEEEEEE-----EEEEECTTSC---CEEEEETTEEEEEEEECCT--TC---CGGGH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCC-CceEEEE-----EEeccCCCCC---eEEccCCCCCCEEEEECCc--cc---ccccc
Confidence              345568899999999999875 4443221     1112233322   211  12357899887554  33   34558


Q ss_pred             hHHHHHHHHHHHHHh
Q 017658          311 YVTGLEAANRVVDYL  325 (368)
Q Consensus       311 ~~Sg~~aA~~Il~~~  325 (368)
                      ...|..+|+.|+...
T Consensus       351 p~~g~~la~~i~~~~  365 (389)
T 2gf3_A          351 SGVGEVLSQLALTGK  365 (389)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            889999999998753

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.78  E-value=0.002  Score=63.63  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..++..+.+.++++|++|+++++|++|..++  ++|++|++    +|+  ++.||.||.|++++.
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~--~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG--DQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEeC--CEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            3578888888999999999999999999877  67888875    343  689999999999984

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.68  E-value=0.004  Score=58.25  Aligned_cols=55  Identities=31%  Similarity=0.427  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      .+...|.+.+++.|++|+++++|++|..++  ++++ |.+++++++||.||+|++.+.
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~-v~t~~g~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDA--DGVS-VTTDRGTYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEEE-EEESSCEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcC--CeEE-EEECCCEEEcCEEEEcCCcCh
Confidence            578889999999999999999999999876  5554 666666899999999999864

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.51  E-value=6.5e-05  Score=58.78  Aligned_cols=107  Identities=11%  Similarity=0.022  Sum_probs=53.1

Q ss_pred             eEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeecccc
Q 017658          129 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKI  208 (368)
Q Consensus       129 ~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~  208 (368)
                      ++++||+||+|+|+.+++.+...+.++ ....+++..+.+....|+.+.|++++|.+.. .         .+   +.+ .
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~I~F~P~LP-~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~-~---------~g---d~s-~   68 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRFVKVTPPFS-YKKRRAVIETHYDQATKVLLEFSRRWWEFTE-A---------DW---KRE-L   68 (130)
T ss_dssp             EEEEESEEEECSCHHHHTTSEEESCCC-HHHHHHHHHCCEECEEEEEEEESSCGGGCCH-H---------HH---HHH-H
T ss_pred             eEEEcCEEEEcCCHHHHhcCcCCCCCC-HHHHHHHHhCCCcceeEEEEEECCCCCCCCC-c---------cc---ccc-C
Confidence            578999999999999999776555563 4557888999999999999999999985421 0         01   111 0


Q ss_pred             ccccCCCCCeEEEEEe-e-cCCCCCCCCHHHHHHHHHHHHhhhccCCC
Q 017658          209 YDEHKDDSATVIQADF-Y-HANELMPLKDDQVVAKAVSYLSKCIKDFS  254 (368)
Q Consensus       209 ~~~~~~~~~~v~~~~~-~-~~~~~~~~~~~e~~~~~~~~l~~~~p~~~  254 (368)
                      .+.   ..+.++..+. . .+..|..+++ +..+.++..|..++|+.+
T Consensus        69 ~~~---~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~  112 (130)
T 2e1m_B           69 DAI---APGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVD  112 (130)
T ss_dssp             HHH---STTHHHHHHHHCCCSCCCC-----------------------
T ss_pred             CCC---CCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Confidence            010   1122221110 1 2335666654 667789999999999765

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.50  E-value=0.011  Score=56.37  Aligned_cols=57  Identities=23%  Similarity=0.237  Sum_probs=47.0

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhhH
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  145 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~l  145 (368)
                      .+.+.|.+.+++.|++|+++++|++|..++  ++|++|++    +|+  +++||.||.|.+....
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            477888888888999999999999999876  66766654    455  7899999999998653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.49  E-value=0.014  Score=54.08  Aligned_cols=57  Identities=14%  Similarity=0.082  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecCEEEEeeChhhH
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGISTL  145 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~a~p~~~l  145 (368)
                      .+-..|.+.+++.|++++++++|+.+..++  +++.++...  ++  +++||.||-|-+....
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~  163 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRHNNEIVDVRAKMVIAADGFESE  163 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEETTEEEEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeecc--ceeeeeeecccccceEEEEeEEEeCCccccH
Confidence            366777888888999999999999999887  667666543  43  6899999999887643

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.45  E-value=0.013  Score=56.72  Aligned_cols=57  Identities=18%  Similarity=0.131  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~l  145 (368)
                      ..++..|.+.++++|++|+++++|++|..++  + +++|.+    +|+  ++.||.||.|++++.-
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~-~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARREN--G-LWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET--T-EEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--C-EEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            4588999999999999999999999999865  4 567776    354  7899999999999853

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.32  E-value=0.00075  Score=62.96  Aligned_cols=112  Identities=11%  Similarity=0.066  Sum_probs=63.6

Q ss_pred             hhccCccHHHHHH-HcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHH
Q 017658           15 RKYDSITARELFK-QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM   93 (368)
Q Consensus        15 ~~ld~~S~~d~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~   93 (368)
                      ++||++|+.+||+ +.++++.+.+.+ ..++  .+. .....|+..++..   .+.. .....+.-+.||+ +.|+++|+
T Consensus       257 ~~lD~~S~~~~L~~~~g~s~~~~~~~-~~~~--~~~-~~~~~s~l~~l~~---~~~~-~~~~~~~~i~GG~-~~l~~~l~  327 (376)
T 2e1m_A          257 RDFDGYSMGRFLREYAEFSDEAVEAI-GTIE--NMT-SRLHLAFFHSFLG---RSDI-DPRATYWEIEGGS-RMLPETLA  327 (376)
T ss_dssp             HHHTTCBHHHHHHHTSCCCHHHHHHH-HHHT--TCT-TTTTSBHHHHHHH---CSCS-CTTCCEEEETTCT-THHHHHHH
T ss_pred             HHHhCCCHHHHHhhccCCCHHHHHHH-Hhhc--Ccc-ccchhhHHHHHHH---hhhh-ccCCceEEECCcH-HHHHHHHH
Confidence            5689999999998 789999877644 3222  121 1224555443322   1111 1122334457995 67999999


Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEee
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAV  140 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~  140 (368)
                      +.+.   .+|++|++|++|..+++ | |..+..+.......+|.+.+
T Consensus       328 ~~l~---~~i~l~~~V~~I~~~~~-g-v~v~~~~~~~~~g~~~~~~~  369 (376)
T 2e1m_A          328 KDLR---DQIVMGQRMVRLEYYDP-G-RDGHHGELTGPGGPAVAIQT  369 (376)
T ss_dssp             HHGG---GTEECSEEEEEEEECCC-C--------------CCEEEEE
T ss_pred             HhcC---CcEEecCeEEEEEECCC-c-eEEEeCCCcCCCCCeeEEEe
Confidence            8774   68999999999998774 5 43232222233555566554

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.28  E-value=0.023  Score=53.36  Aligned_cols=57  Identities=14%  Similarity=0.086  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce--EEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~--~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+++.|++|+.+++|++|..+++ +.+..|... |+  +++||.||.|.+...
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGT-DSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETT-EEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            5778888888888999999999999998763 433344444 55  699999999999865

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.27  E-value=0.00062  Score=59.26  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHh
Q 017658          232 PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSY  311 (368)
Q Consensus       232 ~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~  311 (368)
                      +....+..+.....+...+..... .+......+|.++.+.....    .+...+..+|+|+|||++.+    .++++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~a~~~~~~~----~~~~~~~~~~v~l~GDa~~g----~gv~~A~  313 (336)
T 3kkj_A          243 DASREQVIEHLHGAFAELIDCTMP-APVFSLAHRWLYARPAGAHE----WGALSDADLGIYVCGDWCLS----GRVEGAW  313 (336)
T ss_dssp             TSCHHHHHHHHHHHHHTTCSSCCC-CCSEEEEEEEEEEEESSCCC----CSSEEETTTTEEECCGGGTT----SSHHHHH
T ss_pred             cccchhhhhhhhhhhhhhccCCcC-cchheeccceeecccccccC----ccceeeCCCCEEEEecccCC----cCHHHHH
Confidence            344555666666666666543322 45555566676554322111    11123456899999999852    4789999


Q ss_pred             HHHHHHHHHHHHHhCC
Q 017658          312 VTGLEAANRVVDYLGD  327 (368)
Q Consensus       312 ~Sg~~aA~~Il~~~~~  327 (368)
                      .||+.||+.|++.|..
T Consensus       314 ~sG~~aA~~I~~~L~~  329 (336)
T 3kkj_A          314 LSGQEAARRLLEHLQL  329 (336)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999999874

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.01  E-value=0.038  Score=53.89  Aligned_cols=63  Identities=21%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCc---eEEEEEECC---eEEecCEEEEeeChhh-HHHhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC---CISDVVCGK---ETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g---~v~~v~~~g---~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      ..|...|.+.+++.|++|+++++|++|..+++ +   +|+....++   .+++||.||.|.+... +.+.+
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~l  189 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHDD-DAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESL  189 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEECG-GGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHc
Confidence            35788888889999999999999999998762 2   555332334   5799999999999864 44444

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=96.91  E-value=0.037  Score=53.69  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+++.|++|+++++|++|..++  ++|++|++.   |+  +++||.||.|.+...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            577888888888999999999999999876  667766653   53  799999999999864

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.73  E-value=0.059  Score=50.38  Aligned_cols=58  Identities=19%  Similarity=0.162  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHHhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      .|.+.|.+.+++  ++|+++++|++|..++  ++|+ |++. |++++||.||.|.+... +.+.+
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~l  187 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDA--DGVT-VWFTDGSSASGDLLIAADGSHSALRPWV  187 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEET--TEEE-EEETTSCEEEESEEEECCCTTCSSHHHH
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecC--CcEE-EEEcCCCEEeeCEEEECCCcChHHHHHh
Confidence            466777777766  8999999999999887  5554 5554 67899999999998853 34433

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=96.68  E-value=0.0042  Score=59.34  Aligned_cols=64  Identities=16%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ++..+-...+.+.|.+.+++.|++|+++++|++|..++  ++|++|.+. |++++||.||+|++...
T Consensus       127 ~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          127 FPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             EETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcEEEEEECCCCEEECCEEEECCCCCc
Confidence            44332245799999999999999999999999999876  677788887 55699999999998765

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=96.56  E-value=0.0047  Score=63.83  Aligned_cols=56  Identities=14%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      .++..|.+.++++|++|+++++|++|..++  +++++|.+++++++||.||+|++++.
T Consensus       152 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~--~~v~~V~t~~G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          152 RAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTADGVIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHcCCEEECCceEEEEEEeC--CEEEEEEECCcEEECCEEEECCccch
Confidence            588999999999999999999999999876  66778888877999999999999985

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=96.52  E-value=0.005  Score=60.38  Aligned_cols=57  Identities=28%  Similarity=0.293  Sum_probs=49.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+++++|++|..++  +++++|.++ |+++.||.||+|++...
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~--~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMED--GQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESS--SBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCCh
Confidence            4578888889999999999999999999876  668888887 66899999999999875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.50  E-value=0.017  Score=52.98  Aligned_cols=189  Identities=13%  Similarity=0.059  Sum_probs=100.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN  165 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~  165 (368)
                      ..++..|.+.++++|++|+. ++|++|...+  +           +.||.||+|++++.-. ++++.             
T Consensus       142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~--~-----------~~a~~VV~A~G~~s~~-l~~~~-------------  193 (351)
T 3g3e_A          142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA--R-----------EGADVIVNCTGVWAGA-LQRDP-------------  193 (351)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH--H-----------TTCSEEEECCGGGGGG-TSCCT-------------
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh--c-----------CCCCEEEECCCcChHh-hcCCC-------------
Confidence            36889999999999999999 9999885432  2           5799999999997633 33321             


Q ss_pred             cCccceEEEEEEecCCCCCCCCCceeecC---CCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHH
Q 017658          166 LASIDVVSVKLWFDKKVTVPNVSNACSGF---GDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKA  242 (368)
Q Consensus       166 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~  242 (368)
                       ...+.-...+.++.+. ..  ...+...   .... ..++     .+ .  +++-++..+... ..+....+++..+.+
T Consensus       194 -~l~p~rg~~~~~~~~~-~~--~~~~~~~~~~~~~~-~~y~-----~p-~--~~~~~iGg~~~~-~~~~~~~~~~~~~~l  259 (351)
T 3g3e_A          194 -LLQPGRGQIMKVDAPW-MK--HFILTHDPERGIYN-SPYI-----IP-G--TQTVTLGGIFQL-GNWSELNNIQDHNTI  259 (351)
T ss_dssp             -TCEEEEEEEEEEECTT-CC--SEEEECCTTTCTTC-SCEE-----EE-C--SSCEEEECCCEE-TCCCCSCCHHHHHHH
T ss_pred             -ceeecCCcEEEEeCCC-cc--eEEEeccccCCCCc-eeEE-----Ee-C--CCcEEEeeeeec-CCCCCCCCHHHHHHH
Confidence             1122222333343321 11  1111100   0000 1011     01 1  122222211111 122333456678889


Q ss_pred             HHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCC-CC--CCCCCCCceEEeccccccCCCCccchHHhHHHHHHHH
Q 017658          243 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY-MM--RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN  319 (368)
Q Consensus       243 ~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~-~p--~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~  319 (368)
                      ++.+.++||.+.+.++...+.-     +...+|+ .+. .|  ......+|+|++.-+.  +   .++..|..+|+.+|+
T Consensus       260 ~~~~~~~~P~l~~~~i~~~w~G-----~r~~t~D-~p~~~~~ig~~~~~~~~~~~~G~~--g---~G~~~ap~~g~~la~  328 (351)
T 3g3e_A          260 WEGCCRLEPTLKNARIIGERTG-----FRPVRPQ-IRLEREQLRTGPSNTEVIHNYGHG--G---YGLTIHWGCALEAAK  328 (351)
T ss_dssp             HHHHHHHCGGGGGCEEEEEEEE-----EEEECSS-CEEEEEEECCSSSCEEEEEEECCT--T---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCccCCcEeeeeEe-----eCCCCCC-ccceeeeccCCCCCCeEEEEeCCC--c---chHhhhHHHHHHHHH
Confidence            9999999999875455433221     1112222 110 00  0111257888876444  2   355668889999999


Q ss_pred             HHHHHhCC
Q 017658          320 RVVDYLGD  327 (368)
Q Consensus       320 ~Il~~~~~  327 (368)
                      .|...+..
T Consensus       329 li~~~~~~  336 (351)
T 3g3e_A          329 LFGRILEE  336 (351)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99888763

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.50  E-value=0.0065  Score=57.13  Aligned_cols=58  Identities=22%  Similarity=0.273  Sum_probs=49.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.++++|++|+++++|++|..++  +++.+|.+. |+++.||.||++++...
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~V~~~dG~~i~aD~Vv~a~G~~p  241 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEG--DRVTGVVLSDGNTLPCDLVVVGVGVIP  241 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECcCCcc
Confidence            45688888899999999999999999998776  677788876 67899999999998753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.50  E-value=0.0063  Score=57.44  Aligned_cols=58  Identities=19%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.++++|++|+++++|++|..++  +++++|.+. |+++.||.||++++...
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~v~l~dG~~i~aD~Vv~a~G~~p  251 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG--TKVTGVRMQDGSVIPADIVIVGIGIVP  251 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESS--SBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence            45688888889999999999999999998766  678788876 77899999999998753

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=96.45  E-value=0.04  Score=54.53  Aligned_cols=56  Identities=21%  Similarity=0.165  Sum_probs=45.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--CC--eEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g--~~~~ad~VV~a~p~~~  144 (368)
                      .+...|.+.+++.|++|+.+++|++|..++  +.+++|++  +|  .+++||.||.|.+...
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~--g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLSD--PDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECCS--TTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            577888888888999999999999999864  33456666  35  4799999999999865

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.31  E-value=0.0068  Score=55.96  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      .+++.|.+.+++.|++|+++++|++|..++  +++ .|.+++++++||.||+|++++.
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~v~~~~g~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDD--DGV-TIETADGEYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSE-EEEESSCEEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcC--CEE-EEEECCCeEEcCEEEEcCCccH
Confidence            588999999999999999999999999876  444 4667655799999999999874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.28  E-value=0.0065  Score=59.08  Aligned_cols=57  Identities=21%  Similarity=0.303  Sum_probs=48.4

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~  144 (368)
                      .+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+.  ++  ++.|| .||+|++...
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~-g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDT-GRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTT-CCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCC-CcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            6899999999999999999999999998743 788888764  43  58996 9999988764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.22  E-value=0.22  Score=46.14  Aligned_cols=56  Identities=9%  Similarity=-0.024  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--CCe--EEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+.+.|++|+++++|++|..+++ +.+ .|++  +|+  +++||.||.|.+...
T Consensus       104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~-~~~-~v~~~~~g~~~~~~a~~vV~AdG~~S  163 (394)
T 1k0i_A          104 EVTRDLMEAREACGATTVYQAAEVRLHDLQG-ERP-YVTFERDGERLRLDCDYIAGCDGFHG  163 (394)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEECTTS-SSC-EEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCCeEEeceeEEEEEEecC-Cce-EEEEecCCcEEEEEeCEEEECCCCCc
Confidence            4777888888888999999999999987642 333 3544  566  799999999999854

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.12  E-value=0.013  Score=57.79  Aligned_cols=58  Identities=19%  Similarity=0.230  Sum_probs=48.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+   +|+  ++.||.||+|++...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC-CeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            46889999999999999999999999998654 67877765   355  689999999998853

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.11  E-value=0.014  Score=55.13  Aligned_cols=62  Identities=18%  Similarity=0.255  Sum_probs=51.2

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ++... ...+.+.|.+.+++.|++|+++++|++|..++  ++ +.|.+.+++++||.||+|++...
T Consensus       126 ~~~~~-~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~--~~-~~V~~~~g~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          126 FCDHS-AKDIIRMLMAEMKEAGVQLRLETSIGEVERTA--SG-FRVTTSAGTVDAASLVVASGGKS  187 (417)
T ss_dssp             EESSC-HHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TE-EEEEETTEEEEESEEEECCCCSS
T ss_pred             eeCCC-HHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CE-EEEEECCcEEEeeEEEECCCCcc
Confidence            44444 35799999999999999999999999999876  54 45777766999999999999865

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.03  E-value=0.012  Score=56.19  Aligned_cols=59  Identities=12%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +...+.+.+.+.+++.|++|+++++|++|..++  +++..+.++|+++++|.||++++...
T Consensus       189 ~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~~v~~~g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          189 FDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVD--DEIITKTLDGKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEESSCEEEEEEET--TEEEEEETTSCEEEESEEEECCCEEE
T ss_pred             hhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC--CeEEEEEeCCCEEECCEEEECcCCCC
Confidence            345678888899999999999999999998644  66766777788899999999998754

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=95.88  E-value=0.015  Score=57.30  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=48.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|++   +|+  ++.||.||+|++...
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            46889999999999999999999999988753 56877765   354  689999999998754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=95.83  E-value=0.02  Score=56.54  Aligned_cols=58  Identities=22%  Similarity=0.258  Sum_probs=46.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+.   |+  ++.||.||+|++...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~-g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCC-CeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            46889999999999999999999999987653 567777653   54  689999999998643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.55  E-value=0.034  Score=53.28  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +...+.+.+.+.+++.|++|+++++|++|..++  ++++.+..+|+++.||.||++++...
T Consensus       200 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          200 TSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN--GKVARVITDKRTLDADLVILAAGVSP  258 (472)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEESSCEEECSEEEECSCEEE
T ss_pred             cCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC--CeEEEEEeCCCEEEcCEEEECCCCCc
Confidence            345688889999999999999999999998755  66653334577999999999998753

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=95.48  E-value=0.029  Score=48.29  Aligned_cols=54  Identities=15%  Similarity=0.049  Sum_probs=45.1

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.|.+.+++. |++|+ +++|++|..++  +++++|.+. |++++||.||.|++..
T Consensus        69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~--~~v~~v~~~~g~~i~a~~VV~A~G~~  124 (232)
T 2cul_A           69 AFHARAKYLLEGLRPLHLF-QATATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSF  124 (232)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCC
Confidence            5778888888887 89998 67999999876  667778776 5689999999999984

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=95.42  E-value=0.24  Score=48.75  Aligned_cols=60  Identities=20%  Similarity=0.144  Sum_probs=46.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C-C-eEEecCEEEEeeChhh-HHHhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K-ETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~-g-~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      .|.+.|.+.+++.|++|+.+++|++|..++  ++|+ |++  . | ++++||.||.|.+... +.+.+
T Consensus       149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~--~~v~-v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~l  213 (570)
T 3fmw_A          149 RTEALLAEHAREAGAEIPRGHEVTRLRQDA--EAVE-VTVAGPSGPYPVRARYGVGCDGGRSTVRRLA  213 (570)
T ss_dssp             HHHHHHHHHHHHHTEECCBSCEEEECCBCS--SCEE-EEEEETTEEEEEEESEEEECSCSSCHHHHHT
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CeEE-EEEEeCCCcEEEEeCEEEEcCCCCchHHHHc
Confidence            467788888888899999999999998876  4454 554  3 5 5899999999999864 34444

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.42  E-value=0.026  Score=53.88  Aligned_cols=58  Identities=10%  Similarity=0.105  Sum_probs=48.1

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      +...+.+.+.+.+++.|++|+++++|++|..++  +++ .|.+++++++||.||++++...
T Consensus       187 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v-~v~~~~g~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          187 FDKEMVAEVQKSLEKQAVIFHFEETVLGIEETA--NGI-VLETSEQEISCDSGIFALNLHP  244 (452)
T ss_dssp             CCHHHHHHHHHHHHTTTEEEEETCCEEEEEECS--SCE-EEEESSCEEEESEEEECSCCBC
T ss_pred             CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccC--CeE-EEEECCCEEEeCEEEECcCCCC
Confidence            345678888899999999999999999998765  556 5777766999999999998753

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=95.32  E-value=0.035  Score=52.13  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=48.0

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEec----CCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYD----EERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~----~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.|.+.+++.|++|+++++|++|..+    +  +++ .|.+++++++||.||+|++...
T Consensus       108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~--~~~-~v~~~~g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEK--VRF-VLQVNSTQWQCKNLIVATGGLS  168 (401)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSS--CCE-EEEETTEEEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCC--CeE-EEEECCCEEECCEEEECCCCcc
Confidence            3568999999999999999999999999876    4  444 5777766899999999998765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.29  E-value=0.04  Score=52.19  Aligned_cols=57  Identities=19%  Similarity=0.348  Sum_probs=47.2

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEe--cCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~--~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..  ++  ++++.|.+. |+++.+|.||++++..
T Consensus       190 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          190 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ--QKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT--CCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             hHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC--CcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            345777888889999999999999999986  44  567677775 6789999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.20  E-value=0.012  Score=55.26  Aligned_cols=56  Identities=16%  Similarity=0.151  Sum_probs=43.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceee---------eEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVT---------DFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~---------~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+++++|+         +|..++  +++ +|.++++++.||.||+|++++.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~--~~v-~v~~~~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTN--THQ-IVVHETRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeC--CeE-EEEECCcEEECCEEEECCCccH
Confidence            3588999999999999999999999         887765  555 6766666899999999999974

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=95.16  E-value=0.046  Score=54.06  Aligned_cols=58  Identities=12%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C---------eEEecCEEEEeeChhhH
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K---------ETYSAGAVVLAVGISTL  145 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g---------~~~~ad~VV~a~p~~~l  145 (368)
                      .|.+.|.+.+++.|++|+.+++|++|..+++ |+|++|.+.       |         .+++||.||.|.+....
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            4778888889989999999999999998765 677777764       2         57999999999998643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.16  E-value=0.53  Score=42.99  Aligned_cols=45  Identities=24%  Similarity=0.280  Sum_probs=37.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL  145 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l  145 (368)
                      ..+...|.+.++++|++|+. ++|++|..    . .        + .||.||+|++.+.-
T Consensus       142 ~~~~~~l~~~~~~~G~~i~~-~~v~~l~~----~-~--------~-~a~~VV~A~G~~s~  186 (363)
T 1c0p_A          142 PKYCQYLARELQKLGATFER-RTVTSLEQ----A-F--------D-GADLVVNATGLGAK  186 (363)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCSBGGG----T-C--------S-SCSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEcccHhh----c-C--------c-CCCEEEECCCcchh
Confidence            46889999999999999999 99998842    2 0        2 89999999999763

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.98  E-value=0.044  Score=44.86  Aligned_cols=54  Identities=17%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++++++ +|++|..++  +.+ .|.++++++++|.||+|++..
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~--~~~-~v~~~~g~i~ad~vI~A~G~~  109 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDMG--GVF-EVETEEGVEKAERLLLCTHKD  109 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEECS--SSE-EEECSSCEEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEcC--CEE-EEEECCCEEEECEEEECCCCC
Confidence            458888889999999999999 999998766  333 466664489999999999975

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=94.89  E-value=0.066  Score=52.08  Aligned_cols=58  Identities=21%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceE--EEEEEC-Ce-EEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCI--SDVVCG-KE-TYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v--~~v~~~-g~-~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +++  ..|.++ |+ +++||.||+|++..
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~  315 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLGEQ  315 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCC-CceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence            345778889999999999999999999987553 544  245665 55 79999999999865

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.88  E-value=0.056  Score=48.47  Aligned_cols=56  Identities=16%  Similarity=0.268  Sum_probs=44.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-----C--eEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-----g--~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +++.+|.+.     |  +++.+|.||++++..
T Consensus       184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~  246 (320)
T 1trb_A          184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS  246 (320)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred             HHHHHHHHHhcccCCeEEEcCceeEEEEcCC--CceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence            3467778888888999999999999998765  556666653     3  478999999998863

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=94.84  E-value=3.3  Score=41.06  Aligned_cols=63  Identities=25%  Similarity=0.284  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHHcCC--EEeccceeeeEEecCC-Cc-eEEEEEE-------CC--eEEecCEEEEeeChhh-HHHhhh
Q 017658           87 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE-RC-CISDVVC-------GK--ETYSAGAVVLAVGIST-LQELIK  150 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~-~g-~v~~v~~-------~g--~~~~ad~VV~a~p~~~-l~~ll~  150 (368)
                      .|.+.|.+.+++.|+  +|+++++|++|..+++ ++ .|+ |++       +|  ++++||+||.|.+... +.+.+.
T Consensus       142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~-v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg  218 (639)
T 2dkh_A          142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVT-VTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIG  218 (639)
T ss_dssp             HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEE-EEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEE-EEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhC
Confidence            577788888999887  9999999999988652 11 343 432       34  4789999999999865 445554

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=94.84  E-value=0.05  Score=52.60  Aligned_cols=57  Identities=12%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++. |..+ |+++++|.||++++...
T Consensus       222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          222 DADAALVLEESFAERGVRLFKNARAASVTRTG--AGVL-VTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             SHHHHHHHHHHHHHTTCEEETTCCEEEEEECS--SSEE-EEETTSCEEEESEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CEEE-EEECCCcEEEcCEEEECCCCCc
Confidence            34577888889999999999999999998765  4453 5554 66899999999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.79  E-value=0.038  Score=51.93  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.++++|++|+++++|++|..++   ++.+|.+. |+++.||.||++++...
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~---~~~~v~~~dg~~i~aD~Vv~a~G~~p  241 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEG---QLEQVMASDGRSFVADSALICVGAEP  241 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECSS---SCCEEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEeccC---cEEEEEECCCCEEEcCEEEEeeCCee
Confidence            4567778888999999999999999997643   34567775 77899999999998853

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=94.78  E-value=0.06  Score=52.72  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=47.0

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+++. |++|+++ +|++|..+++ |.+++|.+. |++++||.||.|.+...
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~-g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDAN-GNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTT-SCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEECCEEEECCCCch
Confidence            4888899999888 9999999 9999987654 666677776 66899999999999854

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=94.77  E-value=0.055  Score=53.54  Aligned_cols=58  Identities=14%  Similarity=0.196  Sum_probs=47.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+...|.+.+++.|++|+++++|++|..+++ |+|++|.+   . |+  ++.|+.||+|++...
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            46889999999999999999999999998633 77888764   2 44  589999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.74  E-value=0.057  Score=50.17  Aligned_cols=56  Identities=16%  Similarity=0.146  Sum_probs=45.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +.+ .|.+. |++++||.||++++...
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~d~vv~a~G~~p  243 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGL-EAHLSDGEVIPCDLVVSAVGLRP  243 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEET--TEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecC--CEE-EEEECCCCEEECCEEEECcCCCc
Confidence            4577888899999999999999999998765  444 45665 67899999999998753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=94.69  E-value=0.064  Score=53.78  Aligned_cols=57  Identities=14%  Similarity=0.144  Sum_probs=47.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+...|.+.+++.|++|+.+++|++|..++  |+|.+|.+   . |+  .+.|+.||+|++...
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEecC--CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            4688999999998999999999999999866  77888765   2 44  489999999998754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=94.68  E-value=0.053  Score=53.96  Aligned_cols=57  Identities=11%  Similarity=0.132  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+...|.+.+++.|++|+.+++|++|..++  |+|.+|.+    +|+  .+.|+.||+|++...
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMEN--GECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            4688999999988999999999999999876  78888765    254  689999999998754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.66  E-value=0.078  Score=50.69  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+++.|++|+++++|++|..++  +. ..|.++++++++|.||++++...
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~-~~v~~~~~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMD--GE-FVLTTTHGELRADKLLVATGRTP  271 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEET--TE-EEEEETTEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CE-EEEEECCcEEEcCEEEECCCCCc
Confidence            4578888889999999999999999998755  43 45777788899999999998753

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=94.66  E-value=0.073  Score=51.48  Aligned_cols=56  Identities=20%  Similarity=0.134  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+++.|++|+.+ +|++|..+++ +.+++|++. |++++||.||.|.+...
T Consensus       174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          174 EVARYLSEYAIARGVRHVVD-DVQHVGQDER-GWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEEcCEEEECCCcch
Confidence            57788888888899999999 9999988654 666677776 55899999999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=94.66  E-value=0.056  Score=51.99  Aligned_cols=56  Identities=25%  Similarity=0.300  Sum_probs=46.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++ .|.+. |+++.+|.||++++..
T Consensus       231 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          231 DYDLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCY-NVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             CHHHHHHHHHHHHHHTCEEESSCCEEEEEECS--SSE-EEEETTSCEEEESEEEECCCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC--CEE-EEEECCCcEEEcCEEEEeeCCC
Confidence            34578888889999999999999999998776  445 46665 6689999999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=94.52  E-value=0.067  Score=51.63  Aligned_cols=55  Identities=16%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.++++|++|+++++|++|..++  +++ .|.+. |+++.||.||++++..
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~-~v~l~dG~~i~aD~Vv~a~G~~  281 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKL-LIKLKDGRKVETDHIVAAVGLE  281 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC--CeE-EEEECCCCEEECCEEEECCCCC
Confidence            4567778888999999999999999998665  554 46665 7789999999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=94.47  E-value=0.06  Score=51.43  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEE-EC-CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~-~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +. ..|. ++ |+ +.+|.||++++...
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~-~~v~~~~~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADAD-GR-RVATTMKHGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTT-SC-EEEEESSSCE-EEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC-CE-EEEEEcCCCe-EEeCEEEEeeCccc
Confidence            456788888999999999999999999988753 43 3566 65 55 99999999998743

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=94.44  E-value=0.079  Score=47.05  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEE----------CC-----eEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----------GK-----ETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~----------~g-----~~~~ad~VV~a~p~~  143 (368)
                      .+...|.+.+.+ .|++|+++++|++|..++  +++.+|.+          ++     .+++||.||.|++..
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~--~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~  190 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD  190 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEET--TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecC--CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCc
Confidence            466677777765 699999999999999876  66777765          22     578999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.43  E-value=0.054  Score=52.20  Aligned_cols=56  Identities=20%  Similarity=0.356  Sum_probs=46.3

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|.. +  +++..|.++|+++.+|.||++++..
T Consensus       235 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~--~~v~~v~~~g~~i~~D~Vi~a~G~~  290 (490)
T 2bc0_A          235 DRDLTDLMAKNMEEHGIQLAFGETVKEVAG-N--GKVEKIITDKNEYDVDMVILAVGFR  290 (490)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEETCCEEEEEC-S--SSCCEEEESSCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHHHhCCeEEEeCCEEEEEEc-C--CcEEEEEECCcEEECCEEEECCCCC
Confidence            455778888889999999999999999985 3  4455566788899999999999874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.42  E-value=0.065  Score=48.63  Aligned_cols=57  Identities=16%  Similarity=0.031  Sum_probs=46.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.+.+.+++.|++++++++|++|..++  +++.+|.++++++++|+||+|++...
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHFG--ERLRVVARDGRQWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEET--TEEEEEETTSCEEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEECC--CcEEEEEeCCCEEEeCEEEECCCCCC
Confidence            3577888888888999999999999999876  54433777766999999999999743

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.40  E-value=0.072  Score=51.45  Aligned_cols=57  Identities=18%  Similarity=0.260  Sum_probs=45.8

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.++++|++|+++++|++|..+++ +. ..|.+. |+++++|.||++++..
T Consensus       234 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~-~~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          234 DETIREEVTKQLTANGIEIMTNENPAKVSLNTD-GS-KHVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEEECTT-SC-EEEEETTSCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-ce-EEEEECCCcEEEcCEEEECCCCc
Confidence            345778888899999999999999999987653 33 346665 6689999999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.34  E-value=0.08  Score=50.85  Aligned_cols=58  Identities=10%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C-eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g-~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +++..|.+. | +++.+|.||++++..
T Consensus       225 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~~v~~~~G~~~i~~D~vv~a~G~~  284 (479)
T 2hqm_A          225 DECIQNTITDHYVKEGINVHKLSKIVKVEKNVE-TDKLKIHMNDSKSIDDVDELIWTIGRK  284 (479)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCC-CcEEEEEECCCcEEEEcCEEEECCCCC
Confidence            345778888889999999999999999987543 423346665 6 689999999999863

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.29  E-value=0.07  Score=51.46  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=45.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.++++|++|+++++|++|..+++ +.+ .|.+. |+++++|.||++++..
T Consensus       230 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-~v~~~~G~~i~~D~vv~a~G~~  287 (490)
T 1fec_A          230 DSELRKQLTEQLRANGINVRTHENPAKVTKNAD-GTR-HVVFESGAEADYDVVMLAIGRV  287 (490)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CEE-EEEECCCcEEEcCEEEEccCCC
Confidence            345778888899999999999999999987653 333 46665 6689999999999874

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=94.26  E-value=0.066  Score=51.86  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE---CC-----eEEecCEEEEeeChhhHHHhhh
Q 017658           88 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK-----ETYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        88 L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~---~g-----~~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      ...++.+.++++| ++|+++++|++|..+++++++++|++   +|     .++.|+.||++++.-...+||-
T Consensus       223 ~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~  294 (504)
T 1n4w_A          223 LDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLV  294 (504)
T ss_dssp             TTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHH
Confidence            3444445555665 89999999999999853147888876   35     2688999999999976665543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.20  E-value=0.12  Score=49.54  Aligned_cols=57  Identities=23%  Similarity=0.273  Sum_probs=47.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+   ++++.+.++++++++|.||++++...
T Consensus       226 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~v~~v~~~~~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          226 DGDMAEYIYKEADKHHIEILTNENVKAFKGN---ERVEAVETDKGTYKADLVLVSVGVKP  282 (480)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEES---SBEEEEEETTEEEECSEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC---CcEEEEEECCCEEEcCEEEECcCCCc
Confidence            3457788888999999999999999999754   44666777778899999999998753

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=94.16  E-value=0.059  Score=50.23  Aligned_cols=61  Identities=18%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEE-EEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCIS-DVVCG-KETYSAGAVVLAVGISTL-QELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~-~v~~~-g~~~~ad~VV~a~p~~~l-~~ll  149 (368)
                      .|.+.|.+.+++. |++|+++++|++|..++  ++|+ .|++. |++++||.||.|.+.... .+.+
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  172 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDE--RHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRL  172 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEECT--TSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHT
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC--CceEEEEEECCCCEEECCEEEECCCCChHHHHHh
Confidence            5788888888887 89999999999999876  4453 46665 668999999999998653 4444

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.05  E-value=0.1  Score=49.67  Aligned_cols=57  Identities=21%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++ .+.+. |+++++|.||+|++...
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA--KGA-RVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEE-EEEECCCeEEEcCEEEECcCCCc
Confidence            34578888889999999999999999998766  444 35554 67899999999998753

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=93.92  E-value=0.12  Score=50.36  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=47.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ..|.+.|.+.+++.|++++.+ +|++|..+++ |.++.|.+. |++++||.||.|.+...
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNR-GYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCC-CcEEEEEECCCcEEEeCEEEECCCCch
Confidence            358888888898899999999 8999988654 656667776 55899999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=93.81  E-value=0.11  Score=49.32  Aligned_cols=57  Identities=11%  Similarity=0.180  Sum_probs=45.5

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +.+ .|.+. |+++++|.||++++..
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~i~~D~vv~a~G~~  264 (450)
T 1ges_A          207 DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD-GSL-TLELEDGRSETVDCLIWAIGRE  264 (450)
T ss_dssp             CHHHHHHHHHHHHHHSCEEECSCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSCEE
T ss_pred             hHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-cEE-EEEECCCcEEEcCEEEECCCCC
Confidence            345778888889999999999999999987653 433 46665 6689999999998764

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=93.75  E-value=0.11  Score=49.87  Aligned_cols=56  Identities=20%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++.|++|+.+++| +|..++  ++|.+|.+.  ++++.||.||+|++...
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~--~~v~Gv~v~~~~g~~~a~~VVlAtGg~~  176 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKD--GKVTGFVTEKRGLVEDVDKLVLATGGYS  176 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEET--TEEEEEEETTTEEECCCSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEeC--CEEEEEEEEeCCCeEEeeeEEECCCCCc
Confidence            458889998888889999999999 998876  778777663  45688999999998754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=93.74  E-value=0.096  Score=50.76  Aligned_cols=61  Identities=15%  Similarity=0.142  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHcC-CEEeccceeeeEEecCCCc-eEEEEEE---CC-----eEEecCEEEEeeChhhHHHhh
Q 017658           88 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERC-CISDVVC---GK-----ETYSAGAVVLAVGISTLQELI  149 (368)
Q Consensus        88 L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g-~v~~v~~---~g-----~~~~ad~VV~a~p~~~l~~ll  149 (368)
                      ...++.+.++++| ++|+++++|++|..+++ + ++++|..   +|     .++.|+.||++++.-...+||
T Consensus       228 ~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~-g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL  298 (507)
T 1coy_A          228 LDKTYLAQAAATGKLTITTLHRVTKVAPATG-SGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  298 (507)
T ss_dssp             TTTTHHHHHHHTTCEEEECSEEEEEEEECSS-SSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCcEEEeCCEEEEEEECCC-CCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHH
Confidence            3444445555554 89999999999999764 4 6888876   34     267899999999997666554

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=93.42  E-value=0.1  Score=49.57  Aligned_cols=57  Identities=25%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+   ++++.|.++++++++|.||++++...
T Consensus       190 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          190 DKEFTDVLTEEMEANNITIATGETVERYEGD---GRVQKVVTDKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEESCCEEEEECS---SBCCEEEESSCEEECSEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc---CcEEEEEECCCEEECCEEEECcCCCC
Confidence            3457788888899999999999999999754   33545667777899999999998743

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=93.39  E-value=0.13  Score=50.91  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             hhhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+...|.+.+++.| ++|+++++|++|..++  ++|++|.+   . |+  .+.|+.||+|++...
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s  197 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence            468899999998888 9999999999999876  77777753   2 55  689999999998754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.35  E-value=0.13  Score=46.98  Aligned_cols=55  Identities=11%  Similarity=0.046  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CC--eEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|++|+++++|++|..++  +++.+|.+   +|  +++.+|.||++++..
T Consensus       203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~  262 (360)
T 3ab1_A          203 KTAHEVERARANGTIDVYLETEVASIEESN--GVLTRVHLRSSDGSKWTVEADRLLILIGFK  262 (360)
T ss_dssp             HHHHSSHHHHHHTSEEEESSEEEEEEEEET--TEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred             HHHHHHHHHhhcCceEEEcCcCHHHhccCC--CceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence            366777777888899999999999998765  66666665   45  478999999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.32  E-value=0.16  Score=48.94  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=45.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeE-EecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~-~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +.+ .|.++ |++ +.+|.||++++..
T Consensus       216 d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          216 DESVINVLENDMKKNNINIVTFADVVEIKKVSD-KNL-SIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESST-TCE-EEEETTSCEEEEESEEEECCCBC
T ss_pred             chhhHHHHHHHHHhCCCEEEECCEEEEEEEcCC-ceE-EEEECCCcEEEECCEEEECCCCC
Confidence            345778888899999999999999999987543 433 45554 666 9999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.29  E-value=0.15  Score=45.95  Aligned_cols=53  Identities=9%  Similarity=0.026  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChh
Q 017658           89 FEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        89 ~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+. |++|+++++|++|..++  +++.+|++.    |  +++.+|.||++++..
T Consensus       211 ~~~~~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  270 (338)
T 3itj_A          211 STIMQKRAEKNEKIEILYNTVALEAKGDG--KLLNALRIKNTKKNEETDLPVSGLFYAIGHT  270 (338)
T ss_dssp             CHHHHHHHHHCTTEEEECSEEEEEEEESS--SSEEEEEEEETTTTEEEEEECSEEEECSCEE
T ss_pred             CHHHHHHHHhcCCeEEeecceeEEEEccc--CcEEEEEEEECCCCceEEEEeCEEEEEeCCC
Confidence            45566667665 99999999999998766  556666653    2  478999999998863

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.23  E-value=0.2  Score=47.90  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC---eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++. +.+ ++   +++.+|.||++++..
T Consensus       220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKN--KQVT-VKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEECS--SCEE-EEEESSSEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcC--CEEE-EEEEeCCCcEEEECCEEEEeeCCc
Confidence            35578888888999999999999999998766  4444 443 33   578999999999874

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=93.17  E-value=0.15  Score=50.49  Aligned_cols=54  Identities=19%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+...|.+.+++ .|++| ++++|++|..++  ++|++|.+. |.++.||.||+|++..
T Consensus       124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~--g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          124 RYREYMKKVCENQENLYI-KQEEVVDIIVKN--NQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EESCEEEEEESS--SBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHhCCCCEE-EEeEEEEEEecC--CEEEEEEECCCcEEEeCEEEEccCCC
Confidence            477888888888 48999 578999998876  778888886 6689999999999975

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=93.05  E-value=0.2  Score=47.86  Aligned_cols=56  Identities=18%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce-EEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~-~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++ .|.+. |+ ++++|.||++++..
T Consensus       206 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~G~~~i~~D~vv~a~G~~  263 (463)
T 2r9z_A          206 DPLLSATLAENMHAQGIETHLEFAVAALERDA--QGT-TLVAQDGTRLEGFDSVIWAVGRA  263 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEESSCCEEEEEEET--TEE-EEEETTCCEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CeE-EEEEeCCcEEEEcCEEEECCCCC
Confidence            34577888888999999999999999998765  333 46664 66 79999999998764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.05  E-value=0.18  Score=49.33  Aligned_cols=58  Identities=14%  Similarity=0.281  Sum_probs=45.1

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEec------------------CCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYD------------------EERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~------------------~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|++++.|++|..+                  .+ +++..+..+|++++||.||++++..
T Consensus       191 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~~i~~D~vi~a~G~~  266 (565)
T 3ntd_A          191 DREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIK-GHLSLTLSNGELLETDLLIMAIGVR  266 (565)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTT-CEEEEEETTSCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCC-CcEEEEEcCCCEEEcCEEEECcCCc
Confidence            3457778888899999999999999999873                  22 5554333347789999999999874

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.00  E-value=0.23  Score=48.29  Aligned_cols=56  Identities=13%  Similarity=0.190  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .|.+.|.+.+++ .|++|+.+ .|++|..+++ +.++.|.+. |++++||.||.|.+...
T Consensus       176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQH-GDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCC-CcEEEEEECCCCEEEcCEEEECCCcch
Confidence            577888888888 89999999 5999988654 555567765 56899999999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=92.95  E-value=0.34  Score=47.29  Aligned_cols=79  Identities=13%  Similarity=0.105  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhhccCCCCCc-eeeeEEeecCCCccccCCCCcCCCCCCCC-CCCceEEeccccccCCCCccchHHhHHHHH
Q 017658          239 VAKAVSYLSKCIKDFSTAT-VMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLE  316 (368)
Q Consensus       239 ~~~~~~~l~~~~p~~~~~~-i~~~~~~~~~~~~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~~~~~egA~~Sg~~  316 (368)
                      +.+.+..+.+..|++...+ ++..-.  .+.+-+.-.+-    .....+ .++|||.|||..  ||. +++..|..+|..
T Consensus       463 l~e~~~~~~~~~~g~~~~~~~l~g~e--~~~ssp~ri~~----~~~~~~~~~~gly~~Gega--G~a-~gi~~Aa~~G~~  533 (549)
T 3nlc_A          463 IREAIPAFDRKIKGFASEDGLLTGVE--TRTSSPVCIKR----GKDFQSVNLKGFYPAGEGA--GYA-GGILSAGIDGIK  533 (549)
T ss_dssp             HHHHHHHHHTTSTTTTCTTCEEEEEE--CCSSCSEECCC----TTTTSCTTCBTEEECHHHH--TSC-CSHHHHHHHHHH
T ss_pred             HHHHHHHhhccCcCCCCCCcEEEEEe--eccCCceeEEE----CCCceECCcCCEEEccccC--Chh-hHHHHHHHHHHH
Confidence            4456777888889886432 221111  22211100000    022334 689999999998  777 788999999999


Q ss_pred             HHHHHHHHhC
Q 017658          317 AANRVVDYLG  326 (368)
Q Consensus       317 aA~~Il~~~~  326 (368)
                      ||+.|++.+.
T Consensus       534 ~a~~i~~~~~  543 (549)
T 3nlc_A          534 VAEAVARDIV  543 (549)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.91  E-value=0.18  Score=46.13  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.+.+.+++.|++|+++++|++|..++  +.+ .|.+.++++.+|+||+|++...
T Consensus        89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           89 TYAEYLQVVANHYELNIFENTVVTNISADD--AYY-TIATTTETYHADYIFVATGDYN  143 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSE-EEEESSCCEEEEEEEECCCSTT
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEECC--CeE-EEEeCCCEEEeCEEEECCCCCC
Confidence            466677777888899999999999999876  333 4666655799999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=92.87  E-value=0.23  Score=44.49  Aligned_cols=52  Identities=17%  Similarity=0.334  Sum_probs=39.6

Q ss_pred             HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChh
Q 017658           90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+++.|++|+++++|++|..++  +++.+|.+    +|+  ++.+|.||++++..
T Consensus       194 ~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  251 (319)
T 3cty_A          194 NAYVQEIKKRNIPYIMNAQVTEIVGDG--KKVTGVKYKDRTTGEEKLIETDGVFIYVGLI  251 (319)
T ss_dssp             HHHHHHHHHTTCCEECSEEEEEEEESS--SSEEEEEEEETTTCCEEEECCSEEEECCCEE
T ss_pred             HHHHHHHhcCCcEEEcCCeEEEEecCC--ceEEEEEEEEcCCCceEEEecCEEEEeeCCc
Confidence            456667778899999999999998764  54555654    354  68999999988753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=92.78  E-value=0.28  Score=46.73  Aligned_cols=56  Identities=13%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C--Ce--EEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~--g~--~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++. |.+  +  |+  ++.+|.||++++..
T Consensus       209 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~i~~D~vv~a~G~~  270 (464)
T 2eq6_A          209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKK--DGLH-VRLEPAEGGEGEEVVVDKVLVAVGRK  270 (464)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEE-EEEEETTCCSCEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC--CEEE-EEEeecCCCceeEEEcCEEEECCCcc
Confidence            34577788888999999999999999998765  4443 444  4  65  79999999998764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=92.74  E-value=0.17  Score=50.33  Aligned_cols=55  Identities=20%  Similarity=0.158  Sum_probs=45.6

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+...|.+.+++ .|++| ++++|++|..++  ++|++|.+. |.++.||.||+|++...
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~--g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIVEN--DRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEESS--SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEecC--CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            477888888888 58999 678999998876  678888886 66899999999999853

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=92.69  E-value=0.28  Score=46.77  Aligned_cols=57  Identities=16%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             chhhhHHHHHHH-HHcCCEEeccceeeeEEecCCCceEEEEEE---CC--eEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l-~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+ ++.|++|+++++|++|..++  +++. |.+   +|  +++.+|.||++++...
T Consensus       214 d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          214 DEDVTNALVGALAKNEKMKFMTSTKVVGGTNNG--DSVS-LEVEGKNGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEECSCEEEEEEECS--SSEE-EEEECC---EEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcC--CeEE-EEEEcCCCceEEEECCEEEECCCccc
Confidence            345778888889 99999999999999998765  3343 443   35  5799999999998753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.65  E-value=0.19  Score=45.10  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeCh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  142 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~  142 (368)
                      +.+...+.+.+++.|.+++++++|++|..+++ +. +.|.++++++.+|+||+|++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~-~~v~~~~g~~~~d~vVlAtG~  121 (332)
T 3lzw_A           67 QELINNLKEQMAKFDQTICLEQAVESVEKQAD-GV-FKLVTNEETHYSKTVIITAGN  121 (332)
T ss_dssp             HHHHHHHHHHHTTSCCEEECSCCEEEEEECTT-SC-EEEEESSEEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCcEEccCEEEEEEECCC-Cc-EEEEECCCEEEeCEEEECCCC
Confidence            45778888888888999999999999998763 33 457777666999999999998

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=92.50  E-value=0.26  Score=46.19  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.++++|++|+++++|++|.  +  +.   |.+ +|+++++|.||++++..
T Consensus       186 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          186 PATLADFVARYHAAQGVDLRFERSVTGSV--D--GV---VLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEE--T--TE---EEETTSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCcEEEeCCEEEEEE--C--CE---EEECCCCEEEcCEEEECcCCC
Confidence            34577888888999999999999999998  3  52   444 47789999999999875

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=92.43  E-value=0.13  Score=50.19  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=43.6

Q ss_pred             hhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCc------eEEEEEE----CCe--EEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERC------CISDVVC----GKE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g------~v~~v~~----~g~--~~~ad~VV~a~p~~~  144 (368)
                      ..+.+.|.+.+++ .|++|+++++|++|..+++ +      +|++|.+    +|+  ++.|+.||+|++...
T Consensus       138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             ----CCCHHHHHHCTTEEEECSEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            3577888888888 6999999999999998432 5      7877765    254  689999999998754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.37  E-value=0.34  Score=46.14  Aligned_cols=56  Identities=14%  Similarity=0.244  Sum_probs=44.2

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--CC--eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g--~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.++++|++|+++++|++|..++  +++. +.+  +|  +++.+|.||++++..
T Consensus       211 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          211 DADVSKEIEKQFKKLGVTILTATKVESIADGG--SQVT-VTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCEEEEEEECS--SCEE-EEEESSSCEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcC--CeEE-EEEEcCCceEEEEcCEEEECCCCC
Confidence            34577788888999999999999999998765  4443 443  45  579999999998864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=92.32  E-value=0.29  Score=46.75  Aligned_cols=57  Identities=18%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE------CCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~------~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +.+ .+.+      +++++++|.||++++..
T Consensus       219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~  281 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKSD-GKI-DVSIEAASGGKAEVITCDVLLVCIGRR  281 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTT-SCE-EEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCC-ceE-EEEEEecCCCCceEEEcCEEEECcCCC
Confidence            455778888899999999999999999987653 324 3442      25689999999999875

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.22  E-value=0.24  Score=43.92  Aligned_cols=48  Identities=13%  Similarity=0.213  Sum_probs=37.5

Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CCe--EEecCEEEEeeChh
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~a~p~~  143 (368)
                      +.+++.|++|+++++|++|..++  +++.+|++   +|+  ++.+|.||++++..
T Consensus       191 ~~~~~~gv~~~~~~~v~~i~~~~--~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~  243 (315)
T 3r9u_A          191 KVKKNEKIELITSASVDEVYGDK--MGVAGVKVKLKDGSIRDLNVPGIFTFVGLN  243 (315)
T ss_dssp             HHHHCTTEEEECSCEEEEEEEET--TEEEEEEEECTTSCEEEECCSCEEECSCEE
T ss_pred             HHHhcCCeEEEeCcEEEEEEcCC--CcEEEEEEEcCCCCeEEeecCeEEEEEcCC
Confidence            34567899999999999998766  56766665   354  78999999998863

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.22  E-value=0.3  Score=46.39  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C--CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~--g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++. +.+  +  ++++++|.||++++..
T Consensus       210 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~g~~~~~~~D~vv~a~G~~  269 (455)
T 1ebd_A          210 EKQMAAIIKKRLKKKGVEVVTNALAKGAEERE--DGVT-VTYEANGETKTIDADYVLVTVGRR  269 (455)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CeEE-EEEEeCCceeEEEcCEEEECcCCC
Confidence            34577888888999999999999999998765  4443 443  2  3579999999999875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=92.17  E-value=0.21  Score=47.90  Aligned_cols=57  Identities=19%  Similarity=0.216  Sum_probs=44.8

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C----CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~----g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+ .|.+ +    |+++.+|.||++++...
T Consensus       225 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~~~~~g~~~~~D~vv~a~G~~p  286 (482)
T 1ojt_A          225 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE--DGV-YVTFEGANAPKEPQRYDAVLVAAGRAP  286 (482)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEET--TEE-EEEEESSSCCSSCEEESCEEECCCEEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEECCEEEEEEEcC--CeE-EEEEeccCCCceEEEcCEEEECcCCCc
Confidence            35577888888999999999999999998765  433 3444 3    55789999999998753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=92.12  E-value=0.29  Score=46.90  Aligned_cols=57  Identities=19%  Similarity=0.161  Sum_probs=43.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C-----eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-----ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g-----~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ +++. |.+. +     .++.+|.||++++..
T Consensus       226 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~-v~~~~~~~~~~~~~~~D~vi~a~G~~  288 (483)
T 3dgh_A          226 DQQMAELVAASMEERGIPFLRKTVPLSVEKQDD-GKLL-VKYKNVETGEESEDVYDTVLWAIGRK  288 (483)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEETEEEEEEEECTT-SCEE-EEEEETTTCCEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CcEE-EEEecCCCCceeEEEcCEEEECcccc
Confidence            345778888889999999999999999987653 5443 4432 2     278999999998874

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=91.95  E-value=0.3  Score=44.98  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH-HHhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l-~~ll  149 (368)
                      .|.+.|.+.+++.|++|+++++|++|.. +  +   .|++. |++++||.||.|.+.... .+.+
T Consensus       108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--~---~v~~~~g~~~~ad~vV~AdG~~s~vr~~l  166 (379)
T 3alj_A          108 HLHDALVNRARALGVDISVNSEAVAADP-V--G---RLTLQTGEVLEADLIVGADGVGSKVRDSI  166 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEET-T--T---EEEETTSCEEECSEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--C---EEEECCCCEEEcCEEEECCCccHHHHHHh
Confidence            4778888888889999999999999986 3  6   24554 678999999999998643 3443

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.84  E-value=0.44  Score=42.79  Aligned_cols=54  Identities=15%  Similarity=0.073  Sum_probs=42.0

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|++|++++.|++|..+   +++..|.+    +|  +++.+|.||++++..
T Consensus       192 ~~~~~l~~~l~~~gv~v~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~  251 (335)
T 2zbw_A          192 ASVKELMKAHEEGRLEVLTPYELRRVEGD---ERVRWAVVFHNQTQEELALEVDAVLILAGYI  251 (335)
T ss_dssp             HHHHHHHHHHHTTSSEEETTEEEEEEEES---SSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHHHHHhccccCCeEEecCCcceeEccC---CCeeEEEEEECCCCceEEEecCEEEEeecCC
Confidence            46677777788889999999999999863   33445554    45  478999999998864

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=91.81  E-value=0.5  Score=45.14  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=44.7

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCc-eEEEEEEC----C----eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC-CISDVVCG----K----ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g-~v~~v~~~----g----~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..+++ + ++ .|.+.    |    +++.+|.||++++..
T Consensus       227 d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~-~v~~~~~~~g~~~g~~~~~D~vi~a~G~~  292 (478)
T 3dk9_A          227 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLS-GLEV-SMVTAVPGRLPVMTMIPDVDCLLWAIGRV  292 (478)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSS-SEEE-EEEECCTTSCCEEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEE-EEEEccCCCCcccceEEEcCEEEEeeccc
Confidence            355778888889999999999999999987654 5 33 35553    1    578999999999864

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=91.80  E-value=0.15  Score=49.16  Aligned_cols=58  Identities=12%  Similarity=0.017  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|.+.+++.|++|+++++|++|..+++++..+.|.+    +|  .+++||.||.|.+...
T Consensus       167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF  230 (497)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence            4667788888888999999999999987521022244555    34  3789999999999864

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=91.74  E-value=0.32  Score=48.57  Aligned_cols=56  Identities=18%  Similarity=0.243  Sum_probs=46.0

Q ss_pred             hhhHHHHHHHHHc-CC-EEeccceeeeEEecCCCc---eEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTR-GC-EFLDGRRVTDFIYDEERC---CISDVVC---G-KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~-~i~~~t~V~~I~~~~~~g---~v~~v~~---~-g~--~~~ad~VV~a~p~~~  144 (368)
                      .+...|.+.+++. |+ +|+++++|++|..++  +   +|++|.+   . |+  .+.|+.||+|++...
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~--~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDN--NDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEECT--TCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcC--CccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            5778888888887 99 999999999999875  5   8888764   2 44  689999999988754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=91.69  E-value=0.38  Score=45.99  Aligned_cols=56  Identities=18%  Similarity=0.273  Sum_probs=43.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEe--cCCCceEEEEEEC------CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVCG------KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~--~~~~g~v~~v~~~------g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..  ++  +. ..|.+.      ++++.+|.||++++..
T Consensus       223 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~  286 (478)
T 1v59_A          223 DGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDK--NV-VEIVVEDTKTNKQENLEAEVLLVAVGRR  286 (478)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTT--TE-EEEEEEETTTTEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCC--Ce-EEEEEEEcCCCCceEEECCEEEECCCCC
Confidence            345778888899999999999999999986  33  33 345442      3579999999999864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=91.65  E-value=0.45  Score=45.64  Aligned_cols=56  Identities=20%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.+. |.+.    |  +++.+|.||++++..
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~i~~D~Vi~a~G~~  299 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSG--DGAK-VTFEPVKGGEATTLDAEVVLIATGRK  299 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEE-EEEEETTSCCCEEEEESEEEECCCCE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeC--CEEE-EEEEecCCCceEEEEcCEEEEeeCCc
Confidence            45578888889999999999999999998776  4443 4332    4  579999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=91.65  E-value=0.28  Score=48.36  Aligned_cols=54  Identities=13%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +.   |.+. |+++.+|.||++++..
T Consensus       227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~---v~~~~g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENG--AV---VRLKSGSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGG--TE---EEETTSCEEECSEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCeEEEEecCC--CE---EEECCCCEEEcCEEEEccCCC
Confidence            45678888899999999999999999997654  43   3444 7789999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=91.33  E-value=0.31  Score=47.51  Aligned_cols=56  Identities=30%  Similarity=0.331  Sum_probs=45.3

Q ss_pred             hhhHHHHHHHHHcCC--EEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|.  +|+++++|+++..+++ ++.+.|.++ |++++||+||+|++..
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~~~V~~~~G~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD-ENLWEVTTDHGEVYRAKYVVNAVGLL  146 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETT-TTEEEEEETTSCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCC-CCEEEEEEcCCCEEEeCEEEECCccc
Confidence            477778888888887  8999999999998764 334567776 6689999999999963

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=91.24  E-value=0.33  Score=47.42  Aligned_cols=56  Identities=23%  Similarity=0.125  Sum_probs=44.6

Q ss_pred             hhhHHHHHHHHHcCC--EEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|.  +|+++++|+++..+++ ++.+.|.++ |++++||.||+|++..
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~w~V~~~~G~~i~ad~lV~AtG~~  158 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEE-GLRWTVRTDRGDEVSARFLVVAAGPL  158 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETT-TTEEEEEETTCCEEEEEEEEECCCSE
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCC-CCEEEEEECCCCEEEeCEEEECcCCC
Confidence            466777777888887  8999999999998764 334567776 6689999999999953

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=91.23  E-value=0.43  Score=46.01  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce---EEecCEEEEeeChhh-HHHhhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE---TYSAGAVVLAVGIST-LQELIK  150 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~---~~~ad~VV~a~p~~~-l~~ll~  150 (368)
                      .|.+.|.+.+++.|++|+++++|++|..++  ++|+ |++. ++   +++||.||.|-+... +.+.+.
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  173 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEG--DHVV-VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG  173 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECS--SCEE-EEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEE-EEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence            477888888888899999999999999876  4465 5543 32   799999999998865 445543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=91.14  E-value=0.46  Score=45.82  Aligned_cols=61  Identities=16%  Similarity=0.096  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce---EEecCEEEEeeChhh-HHHhhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE---TYSAGAVVLAVGIST-LQELIK  150 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~---~~~ad~VV~a~p~~~-l~~ll~  150 (368)
                      .|.+.|.+.+++.|++|+++++|++|..++  ++|+ |++. ++   +++||.||.|-+... +.+.+.
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  172 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDG--AGVT-VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG  172 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcC--CeEE-EEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence            477788888888899999999999999877  4565 5543 32   799999999998864 344443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.01  E-value=0.42  Score=45.54  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=44.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.+.+.+++.|++|+++++|++|..++  +++. +.+    +|  +++.+|.||++++...
T Consensus       217 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          217 DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG--DGVK-LTVEPSAGGEQTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             CHHHHHHHHHHHHHSSCCEECSEEEEEEECSS--SSEE-EEEEESSSCCCEEEEESEEECCCCEEE
T ss_pred             cHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcC--CeEE-EEEEecCCCcceEEECCEEEECCCCCc
Confidence            34577888889999999999999999998655  3343 443    34  5799999999998753

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=90.81  E-value=0.34  Score=46.82  Aligned_cols=57  Identities=12%  Similarity=0.072  Sum_probs=42.8

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C----eEEecCEEEEeeCh
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K----ETYSAGAVVLAVGI  142 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g----~~~~ad~VV~a~p~  142 (368)
                      .+.+.+.+.+.+.++++|++|+++++|++|.-+   +.+..+... |    +++.||.||.|++.
T Consensus       269 ~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~---~~~~~~~~~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          269 MFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEK---QLLAKTKHEDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEETTEEEEEECSS---EEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred             CCCHHHHHHHHHHHHhcceeeecCceEEEEeCC---ceEEEEEecCcccceeeeccCEEEEccCC
Confidence            456778888999999999999999999998532   322223332 3    46999999999875

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=90.77  E-value=0.36  Score=42.88  Aligned_cols=57  Identities=11%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|++++++++|+.|..+.+++..+.|.++ |+++.+|+||+|++..
T Consensus        57 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           57 KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            47777888888889999999999999765311122446665 5689999999999974

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=90.59  E-value=0.47  Score=42.64  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|.+++++++|++|..++  +. +.|.++ |+++.+|+||+|++..
T Consensus        65 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~-~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           65 KDLVKGLVEQVAPFNPVYSLGERAETLEREG--DL-FKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHHHHHHHGGGCCEEEESCCEEEEEEET--TE-EEEEETTSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEECC--CE-EEEEECCCCEEEeCEEEECCCCC
Confidence            3477788888888899999999999998876  43 346665 5689999999999974

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=90.37  E-value=0.38  Score=48.18  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=46.0

Q ss_pred             hhhhHHHHHHHHHc--CCEEeccceeeeEEecCCCc---eEEEEEE----CCe--EEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTR--GCEFLDGRRVTDFIYDEERC---CISDVVC----GKE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~--G~~i~~~t~V~~I~~~~~~g---~v~~v~~----~g~--~~~ad~VV~a~p~~  143 (368)
                      ..+...|.+.++++  |++|+.++.|++|..++  +   +|.+|..    +|+  .+.|+.||+|++-.
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~--~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~  232 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLDK--NTPNRIAGAVGFNLRANEVHIFKANAMVVACGGA  232 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEECS--SSTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeC--CccceEEEEEEEEcCCCcEEEEEeCEEEECCCcc
Confidence            35888899988887  99999999999999876  5   8888764    243  58999999998864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=90.35  E-value=0.49  Score=43.12  Aligned_cols=56  Identities=14%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|.+++++++|++|..+++ +.+ .|.+. |+++.+|+||+|++..
T Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~~-~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           74 IDLVESLWAQAERYNPDVVLNETVTKYTKLDD-GTF-ETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             HHHHHHHHHHHHTTCCEEECSCCEEEEEECTT-SCE-EEEETTSCEEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCEEEcCCEEEEEEECCC-ceE-EEEECCCcEEEeeEEEEccCCC
Confidence            35777888888888999999999999998653 343 46665 5689999999999874

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=90.17  E-value=0.42  Score=42.91  Aligned_cols=53  Identities=17%  Similarity=0.256  Sum_probs=43.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|+++++++ |++|..++  +.+ .|.++++++++|.||+|++..
T Consensus        71 ~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~--~~~-~v~~~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           71 ELTDKFRKQSERFGTTIFTET-VTKVDFSS--KPF-KLFTDSKAILADAVILAIGAV  123 (333)
T ss_dssp             HHHHHHHHHHHHTTCEEECCC-CCEEECSS--SSE-EEECSSEEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHCCCEEEEeE-EEEEEEcC--CEE-EEEECCcEEEcCEEEECCCCC
Confidence            577888888888999999997 99998765  434 355577889999999999985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.12  E-value=0.21  Score=50.34  Aligned_cols=56  Identities=11%  Similarity=0.061  Sum_probs=40.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      .+...+.+.+++.|++|+++++|++|..++  ..+..+..+ ++++.||.||++++...
T Consensus       568 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p  624 (690)
T 3k30_A          568 FEVNRIQRRLIENGVARVTDHAVVAVGAGG--VTVRDTYASIERELECDAVVMVTARLP  624 (690)
T ss_dssp             TCHHHHHHHHHHTTCEEEESEEEEEEETTE--EEEEETTTCCEEEEECSEEEEESCEEE
T ss_pred             hhHHHHHHHHHHCCCEEEcCcEEEEEECCe--EEEEEccCCeEEEEECCEEEECCCCCC
Confidence            356778888999999999999999997432  222211122 34799999999998753

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=90.05  E-value=0.44  Score=47.33  Aligned_cols=54  Identities=17%  Similarity=0.092  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+...+.+.+++. |++|+ +..|+.|..++  ++|++|.+. |+++.||.||+|++..
T Consensus       118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~--g~V~GV~t~~G~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSANS--GKFSSVTVRSGRAIQAKAAILACGTF  173 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred             HHHHHHHHHHHhCCCCEEE-eeEEEEEEecC--CEEEEEEECCCcEEEeCEEEECcCCC
Confidence            4677888888874 89995 56999998876  678888876 6789999999999975

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=89.96  E-value=0.38  Score=44.85  Aligned_cols=52  Identities=13%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++++++++|++|.  +  +.|  +..+|+++++|.||++++..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~--~--~~v--~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIR--E--HEI--VDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEC--S--SEE--EETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEEC--C--CeE--EECCCCEEeeeEEEECCCCC
Confidence            4688888899999999999999999995  3  223  22347799999999998864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=89.92  E-value=0.48  Score=45.16  Aligned_cols=57  Identities=14%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             hhhhHHHHHHHHHcCCE--EeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~--i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++  |+++++|++|..++++++ +.|++.    |  .++.||+||+|++..
T Consensus       101 ~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~-~~V~~~~~~~g~~~~~~~d~VVvAtG~~  165 (464)
T 2xve_A          101 EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQT-FTVTVQDHTTDTIYSEEFDYVVCCTGHF  165 (464)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTE-EEEEEEETTTTEEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCc-EEEEEEEcCCCceEEEEcCEEEECCCCC
Confidence            35777788888888988  999999999998763123 445543    3  478999999999953

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=89.81  E-value=0.56  Score=41.59  Aligned_cols=51  Identities=10%  Similarity=0.254  Sum_probs=38.0

Q ss_pred             HHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeCh
Q 017658           90 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGI  142 (368)
Q Consensus        90 ~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~  142 (368)
                      ..+.+.+++ .|++|+++++|++|..++  +++.+|.+.    |+  ++.+|.||++++.
T Consensus       183 ~~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  240 (310)
T 1fl2_A          183 QVLQDKLRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELAGIFVQIGL  240 (310)
T ss_dssp             HHHHHHHHTCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             HHHHHHHhhCCCeEEecCCceEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence            345566676 699999999999998655  556566552    43  6899999998765

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=89.74  E-value=0.55  Score=45.76  Aligned_cols=59  Identities=14%  Similarity=0.206  Sum_probs=44.6

Q ss_pred             HHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EE---ecCEEEEeeChhhHHHhhhh
Q 017658           91 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TY---SAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        91 ~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~---~ad~VV~a~p~~~l~~ll~~  151 (368)
                      ++.+.+.+ .|++|++++.|++|..++  +++++|.+.    |+  ++   .++.||++++.....+|+..
T Consensus       200 ~~l~~~~~~~~~~i~~~~~V~~i~~~~--~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~  268 (546)
T 1kdg_A          200 TYLQTALARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQ  268 (546)
T ss_dssp             THHHHHHTCTTEEEECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHH
Confidence            34454544 589999999999999976  788898874    43  33   78999999999776666543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=89.50  E-value=0.66  Score=45.24  Aligned_cols=57  Identities=18%  Similarity=0.102  Sum_probs=46.8

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      +...+.+.+.+.+++.|+++++++.|+++...+  +++. |... ++++.+|.|++|++-.
T Consensus       261 ~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~--~~~~-v~~~~~~~~~~D~vLvAvGR~  318 (542)
T 4b1b_A          261 FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD--DKIL-VEFSDKTSELYDTVLYAIGRK  318 (542)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET--TEEE-EEETTSCEEEESEEEECSCEE
T ss_pred             cchhHHHHHHHHHHhhcceeecceEEEEEEecC--CeEE-EEEcCCCeEEEEEEEEccccc
Confidence            345688889999999999999999999999877  5554 5555 6688999999998764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=89.50  E-value=0.9  Score=43.49  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=43.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|++++.|++|...++ +.+. |.+ +   |+  ++.+|.||++++..
T Consensus       224 d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~-~~~~-v~~~~~~~g~~~~~~~D~vi~a~G~~  286 (488)
T 3dgz_A          224 DQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT-NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRV  286 (488)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCEE-EEEEETTTTEEEEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEE-EEEEeCCCCeeEEEECCEEEEcccCC
Confidence            355778888889999999999999999987543 4443 333 2   44  47999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=89.46  E-value=0.26  Score=45.78  Aligned_cols=50  Identities=14%  Similarity=0.064  Sum_probs=39.5

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      +.....+.+++.|++++++++|++|..++  ..   |+++ |+++.+|++|+|++.
T Consensus        64 l~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~---v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           64 ILIKKNDWYEKNNIKVITSEFATSIDPNN--KL---VTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             TBSSCHHHHHHTTCEEECSCCEEEEETTT--TE---EEETTSCEEECSEEEECCCE
T ss_pred             ccCCCHHHHHHCCCEEEeCCEEEEEECCC--CE---EEECCCCEEECCEEEEecCC
Confidence            44445566778899999999999998765  43   4454 779999999999996

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=89.30  E-value=0.52  Score=46.00  Aligned_cols=56  Identities=16%  Similarity=0.117  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHcCC--EEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|.  +|+++++|+++..+++ ++.+.|.++ |++++||.||+|++..
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~w~V~~~~G~~~~ad~lV~AtG~~  146 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVEN-DRLWEVTLDNEEVVTCRFLISATGPL  146 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGG-GTEEEEEETTTEEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCC-CCEEEEEECCCCEEEeCEEEECcCCC
Confidence            466777777787776  8999999999998764 334567776 6789999999999954

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=88.98  E-value=0.43  Score=45.88  Aligned_cols=48  Identities=17%  Similarity=0.261  Sum_probs=39.0

Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      +.++++|++|++++.|++|..++   ++..|.+. |+++.+|.||++++...
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~---~v~~v~~~~g~~i~aD~Vv~a~G~~p  313 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNE---KVERVIDMNNHEYKVDALIFADGRRP  313 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSS---SCCEEEETTCCEEECSEEEECCCEEE
T ss_pred             HHHHhCCcEEEeCCeeEEEecCC---ceEEEEeCCCeEEEeCEEEECCCcCc
Confidence            67888999999999999997543   35556665 67899999999998753

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=88.94  E-value=0.36  Score=47.18  Aligned_cols=52  Identities=21%  Similarity=0.313  Sum_probs=40.9

Q ss_pred             HcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecC-EEEEeeChhhHHHhhh
Q 017658           98 TRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAG-AVVLAVGISTLQELIK  150 (368)
Q Consensus        98 ~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad-~VV~a~p~~~l~~ll~  150 (368)
                      +.|++|++++.|++|..+++ +++++|.+.    |+  ++.|+ .||+|++.....+|+.
T Consensus       221 ~~~~~i~~~~~V~~i~~~~~-~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~  279 (546)
T 2jbv_A          221 QENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLM  279 (546)
T ss_dssp             CTTEEEECSCEEEEEEECTT-SBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             CCCcEEEeCCEEEEEEECCC-CeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhh
Confidence            56899999999999998764 678888762    33  68998 8999999865555654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=88.61  E-value=1.4  Score=41.73  Aligned_cols=55  Identities=18%  Similarity=0.122  Sum_probs=38.5

Q ss_pred             hhhhHHHHHHHHH------cCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRT------RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~------~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~  143 (368)
                      ..++..+.+.+..      .|++|+++++|++|..++  +++ .|.+    +|+  ++++|.||+|++..
T Consensus       310 ~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~--~~~-~v~~~~~~~g~~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          310 TDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA--QGI-ELALRDAGSGELSVETYDAVILATGYE  376 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET--TEE-EEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC--CEE-EEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence            3444555444332      589999999999998766  443 3444    344  48999999999975

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=88.47  E-value=0.67  Score=43.84  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      +...+.+.+.+.+++. +++++++.|++|..++   ++..+..+++++.+|.||++++..
T Consensus       188 ~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~---~v~~v~~~g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          188 FDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE---RVEKVVTDAGEYKAELVILATGIK  243 (449)
T ss_dssp             SCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS---SCCEEEETTEEEECSEEEECSCEE
T ss_pred             cCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC---cEEEEEeCCCEEECCEEEEeeCCc
Confidence            3456777888888888 9999999999997543   354566778899999999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=88.41  E-value=0.76  Score=43.43  Aligned_cols=55  Identities=15%  Similarity=-0.141  Sum_probs=41.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce---EEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE---TYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~---~~~ad~VV~a~p~~~  144 (368)
                      .+.+.+.+.+++.+.+|+++++|++|..++  +++ .|++.    |+   ++.||+||+|++...
T Consensus       116 ~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~--~~~-~V~~~~~~~G~~~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          116 TIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSW-VVTYKGTKAGSPISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEE-EEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHHhhCeEEeCCEEEEEEeCC--CeE-EEEEeecCCCCeeEEEEeCEEEECCCCCC
Confidence            466677777777788899999999998766  543 34442    55   789999999999743

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=88.39  E-value=1.1  Score=42.87  Aligned_cols=55  Identities=22%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CC--eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++. ++|+++++|++|..++  +++. +.+   +|  +++.+|.||++++..
T Consensus       214 d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~--~~v~-v~~~~~~G~~~~i~~D~Vi~a~G~~  273 (492)
T 3ic9_A          214 DEEMKRYAEKTFNEE-FYFDAKARVISTIEKE--DAVE-VIYFDKSGQKTTESFQYVLAATGRK  273 (492)
T ss_dssp             CHHHHHHHHHHHHTT-SEEETTCEEEEEEECS--SSEE-EEEECTTCCEEEEEESEEEECSCCE
T ss_pred             CHHHHHHHHHHHhhC-cEEEECCEEEEEEEcC--CEEE-EEEEeCCCceEEEECCEEEEeeCCc
Confidence            345777788888877 9999999999998776  4454 444   46  579999999999874

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=88.37  E-value=0.83  Score=40.45  Aligned_cols=54  Identities=19%  Similarity=0.298  Sum_probs=42.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|+++++ ++|++|..++  +.+ .|.+. |+++++|.||+|++..
T Consensus        59 ~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~--~~~-~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           59 LDFMQPWQEQCFRFGLKHEM-TAVQRVSKKD--SHF-VILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             HHHHHHHHHHHHTTSCEEEC-SCEEEEEEET--TEE-EEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EEEEEEEEcC--CEE-EEEEcCCCEEECCEEEECCCCC
Confidence            35777788888888999998 7999998876  443 35444 6789999999999964

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=88.26  E-value=1.1  Score=39.54  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             HHHHHHHH-HcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeCh
Q 017658           90 EPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  142 (368)
Q Consensus        90 ~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~  142 (368)
                      ..+.+.+. +.|++|+++++|++|..++  +++.+|.+    +|+  ++.+|.||++++.
T Consensus       182 ~~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  239 (311)
T 2q0l_A          182 PITLEHAKNNDKIEFLTPYVVEEIKGDA--SGVSSLSIKNTATNEKRELVVPGFFIFVGY  239 (311)
T ss_dssp             HHHHHHHHTCTTEEEETTEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             HHHHHHHhhCCCeEEEeCCEEEEEECCC--CcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence            34555565 4699999999999998765  45555554    354  6899999998875

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=88.21  E-value=0.83  Score=42.30  Aligned_cols=58  Identities=10%  Similarity=0.098  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH-HHhhh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL-QELIK  150 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l-~~ll~  150 (368)
                      |.+.|.+.+  .|++|+++++|++|..++  ++++ |++. |++++||.||.|.+.... .+.+.
T Consensus       101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~vr~~~~  160 (397)
T 2vou_A          101 IYGGLYELF--GPERYHTSKCLVGLSQDS--ETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLL  160 (397)
T ss_dssp             HHHHHHHHH--CSTTEETTCCEEEEEECS--SCEE-EEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHhC--CCcEEEcCCEEEEEEecC--CEEE-EEECCCCEEECCEEEECCCcchhHHHHhc
Confidence            444444443  389999999999999876  4454 6665 668999999999998643 44443

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=88.07  E-value=1.2  Score=40.56  Aligned_cols=57  Identities=16%  Similarity=0.263  Sum_probs=42.5

Q ss_pred             hhhHHHHHHHHH-cCCEEeccceeeeEEecCC-----------------CceEEEEEEC-------C--------eEEec
Q 017658           87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEE-----------------RCCISDVVCG-------K--------ETYSA  133 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~-----------------~g~v~~v~~~-------g--------~~~~a  133 (368)
                      .+.+.|.+.+++ .|++|+.++.|++|..+++                 ..+|.+|.++       +        .+++|
T Consensus       161 d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~A  240 (344)
T 3jsk_A          161 LFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINA  240 (344)
T ss_dssp             HHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEEC
T ss_pred             HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEc
Confidence            355777787877 4999999999999987651                 0267777651       2        36889


Q ss_pred             CEEEEeeChh
Q 017658          134 GAVVLAVGIS  143 (368)
Q Consensus       134 d~VV~a~p~~  143 (368)
                      ++||.|++..
T Consensus       241 k~VV~ATG~~  250 (344)
T 3jsk_A          241 PVIISTTGHD  250 (344)
T ss_dssp             SEEEECCCSS
T ss_pred             CEEEECCCCC
Confidence            9999998875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=88.03  E-value=0.72  Score=40.90  Aligned_cols=54  Identities=15%  Similarity=0.182  Sum_probs=42.7

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|+++++ ++|++|..++  +++ .|.++ ++++.+|+||+|++..
T Consensus        70 ~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~-~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           70 SDMIKVFNKHIEKYEVPVLL-DIVEKIENRG--DEF-VVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHHHHTTTCCEEE-SCEEEEEEC----CE-EEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EEEEEEEecC--CEE-EEEECCCCEEEcCEEEECcCCC
Confidence            35777888888888999999 9999998876  443 46666 5789999999999876

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=87.35  E-value=0.79  Score=40.87  Aligned_cols=50  Identities=16%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC------CeEEecCEEEEeeCh
Q 017658           90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------KETYSAGAVVLAVGI  142 (368)
Q Consensus        90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~------g~~~~ad~VV~a~p~  142 (368)
                      +...+.+++.|++++++++|++|..++  + +..|.+.      ++++.+|.||++++.
T Consensus       193 ~~~~~~l~~~gv~~~~~~~v~~i~~~~--~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~  248 (332)
T 3lzw_A          193 EHSVENLHASKVNVLTPFVPAELIGED--K-IEQLVLEEVKGDRKEILEIDDLIVNYGF  248 (332)
T ss_dssp             HHHHHHHHHSSCEEETTEEEEEEECSS--S-CCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred             HHHHHHHhcCCeEEEeCceeeEEecCC--c-eEEEEEEecCCCceEEEECCEEEEeecc
Confidence            344556788999999999999998655  4 3344442      246899999998875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=87.27  E-value=0.76  Score=44.50  Aligned_cols=57  Identities=9%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|++++.+++|++|..+.+++..+.|.++ |+++.+|+||+|++..
T Consensus       268 ~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~  325 (521)
T 1hyu_A          268 KLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK  325 (521)
T ss_dssp             HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCC
Confidence            47778888888899999999999999764210112346665 6689999999999974

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=87.24  E-value=0.99  Score=40.32  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=42.9

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|+++++++ |++|..++  +.+. +.+    ++.++.+|.||+|++..
T Consensus        85 ~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~--~~~~-v~~~~~~~~~~~~~d~vvlAtG~~  141 (338)
T 3itj_A           85 ELMDRMREQSTKFGTEIITET-VSKVDLSS--KPFK-LWTEFNEDAEPVTTDAIILATGAS  141 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEECSC-EEEEECSS--SSEE-EEETTCSSSCCEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEEeE-EEEEEEcC--CEEE-EEEEecCCCcEEEeCEEEECcCCC
Confidence            577888888999999999999 99998776  5443 554    35689999999999874

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=87.03  E-value=1.2  Score=39.77  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=37.7

Q ss_pred             HHHH-HHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChh
Q 017658           90 EPWM-DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        90 ~~l~-~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~  143 (368)
                      ..+. +.+++.|++|+++++|++|..+++.+++.+|.+    +|  +++.+|.||++++..
T Consensus       198 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  258 (333)
T 1vdc_A          198 KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE  258 (333)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCc
Confidence            3444 335678999999999999986541015655554    24  478999999998763

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=86.86  E-value=1  Score=43.82  Aligned_cols=55  Identities=16%  Similarity=0.028  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHcC--CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           88 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        88 L~~~l~~~l~~~G--~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      +.+.+.+.+++.+  .+|+++++|+++..+++++ .+.|.++ |++++||.||+|++..
T Consensus        96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~-~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATN-TWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT-EEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCC-eEEEEECCCCEEEeCEEEECcCCC
Confidence            5555655566655  6899999999999876423 3557776 6689999999999964

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=86.78  E-value=0.81  Score=43.45  Aligned_cols=54  Identities=22%  Similarity=0.340  Sum_probs=42.7

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C--eEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|.. +  + +. +..+ |  +++.+|.||++++..
T Consensus       211 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~--~-v~-v~~~~G~~~~i~~D~vv~a~G~~  267 (458)
T 1lvl_A          211 DSELTAPVAESLKKLGIALHLGHSVEGYEN-G--C-LL-ANDGKGGQLRLEADRVLVAVGRR  267 (458)
T ss_dssp             CHHHHHHHHHHHHHHTCEEETTCEEEEEET-T--E-EE-EECSSSCCCEECCSCEEECCCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEe-C--C-EE-EEECCCceEEEECCEEEECcCCC
Confidence            345778888889999999999999999975 4  4 43 4433 5  579999999999874

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=86.54  E-value=0.68  Score=45.55  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=42.1

Q ss_pred             HHcCCEEeccceeeeEEecCC--CceEEEEEEC---Ce--EEecC-EEEEeeChhhHHHhhhh
Q 017658           97 RTRGCEFLDGRRVTDFIYDEE--RCCISDVVCG---KE--TYSAG-AVVLAVGISTLQELIKN  151 (368)
Q Consensus        97 ~~~G~~i~~~t~V~~I~~~~~--~g~v~~v~~~---g~--~~~ad-~VV~a~p~~~l~~ll~~  151 (368)
                      ++.+.+|++++.|++|..+.+  +++++||...   |+  ++.|+ -||++++.-...+||--
T Consensus       238 ~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~l  300 (583)
T 3qvp_A          238 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEY  300 (583)
T ss_dssp             TCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHH
T ss_pred             cCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHH
Confidence            456899999999999999821  1789999863   43  57886 59999998877776543

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=86.50  E-value=1.9  Score=39.00  Aligned_cols=40  Identities=10%  Similarity=0.189  Sum_probs=30.0

Q ss_pred             hhhHHHHHHHHHc-CCEEeccceeeeEEecCC-C-c--eEEEEEE
Q 017658           87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEE-R-C--CISDVVC  126 (368)
Q Consensus        87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~-~-g--~v~~v~~  126 (368)
                      .+...|.+.+.+. |++|+.+++|++|..+++ + |  +|.+|.+
T Consensus       147 ~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv  191 (326)
T 2gjc_A          147 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVT  191 (326)
T ss_dssp             HHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEE
T ss_pred             HHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEe
Confidence            3567777777775 999999999999998742 1 3  7888865

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=86.30  E-value=1.4  Score=39.04  Aligned_cols=50  Identities=18%  Similarity=0.397  Sum_probs=36.3

Q ss_pred             HHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017658           92 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST  144 (368)
Q Consensus        92 l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~  144 (368)
                      +.+.+.+ .|++++++++|++|..++  + +..|.+.    |+  ++.+|.||++++...
T Consensus       195 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p  251 (323)
T 3f8d_A          195 YVETVKKKPNVEFVLNSVVKEIKGDK--V-VKQVVVENLKTGEIKELNVNGVFIEIGFDP  251 (323)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEESS--S-EEEEEEEETTTCCEEEEECSEEEECCCEEC
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEeccC--c-eeEEEEEECCCCceEEEEcCEEEEEECCCC
Confidence            4444444 599999999999998653  3 4455543    54  789999999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=86.29  E-value=0.92  Score=42.93  Aligned_cols=56  Identities=11%  Similarity=-0.054  Sum_probs=39.6

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEE--EEEEC-Ce----EEecCEEEEeeCh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS--DVVCG-KE----TYSAGAVVLAVGI  142 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~--~v~~~-g~----~~~ad~VV~a~p~  142 (368)
                      .+.+.+....++.|.+|+++++|++|..++++++.+  .|.+. |+    ++.||+||+|++.
T Consensus       128 ~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          128 EFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            355566666677789999999999998762113333  24333 43    7999999999986

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=86.28  E-value=0.53  Score=42.41  Aligned_cols=42  Identities=14%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             CCCCCceEEecccccc--C-CCC-ccchHHhHHHHHHHHHHHHHhC
Q 017658          285 FTSFPNLFMAGDWITT--R-HGS-WSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       285 ~~~~~~L~laGd~~~~--~-~~~-~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      .|.+||+|.|||....  + +.+ .+.-+++.||+.||+.|++.+.
T Consensus       280 ~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la  325 (326)
T 3fpz_A          280 YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             CTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999997642  1 111 2445678899999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=85.50  E-value=1.4  Score=39.10  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=42.8

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.|++++. ++|++|..++  +.++ |.++++++.+|.||+|++..
T Consensus        73 ~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~-v~~~~~~~~~~~li~AtG~~  125 (319)
T 3cty_A           73 ELAKLFADHAANYAKIREG-VEVRSIKKTQ--GGFD-IETNDDTYHAKYVIITTGTT  125 (319)
T ss_dssp             HHHHHHHHHHHTTSEEEET-CCEEEEEEET--TEEE-EEESSSEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHcCCEEEE-eeEEEEEEeC--CEEE-EEECCCEEEeCEEEECCCCC
Confidence            4777788888888999998 7999998876  4443 66677789999999999964

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=84.98  E-value=2.1  Score=38.12  Aligned_cols=51  Identities=14%  Similarity=0.072  Sum_probs=36.7

Q ss_pred             HHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChh
Q 017658           90 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        90 ~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+ .|++|+++++|++|..+   +++.+|.+    +|+  ++.+|.||++++..
T Consensus       191 ~~~~~~l~~~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~  248 (325)
T 2q7v_A          191 KVAQARAFANPKMKFIWDTAVEEIQGA---DSVSGVKLRNLKTGEVSELATDGVFIFIGHV  248 (325)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECSEEEECSCEE
T ss_pred             hHHHHHHHhcCCceEecCCceEEEccC---CcEEEEEEEECCCCcEEEEEcCEEEEccCCC
Confidence            344555544 69999999999999864   34555655    354  68999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=84.77  E-value=1.2  Score=40.36  Aligned_cols=54  Identities=11%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEe-cCEEEEeeChh
Q 017658           87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYS-AGAVVLAVGIS  143 (368)
Q Consensus        87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~-ad~VV~a~p~~  143 (368)
                      .+.+.+.+.+++.| ++|+++++|++|..++  +.+ .|.+. |+++. +|.||++++..
T Consensus       215 ~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~--~~~-~v~~~~g~~~~~~d~vi~a~G~~  271 (369)
T 3d1c_A          215 YTRQRLGNVIKQGARIEMNVHYTVKDIDFNN--GQY-HISFDSGQSVHTPHEPILATGFD  271 (369)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSCCEEEEEEET--TEE-EEEESSSCCEEESSCCEECCCBC
T ss_pred             HHHHHHHHHHhhCCcEEEecCcEEEEEEecC--Cce-EEEecCCeEeccCCceEEeeccC
Confidence            34577777788887 9999999999997655  433 35554 66554 69999998864

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=84.70  E-value=0.72  Score=42.76  Aligned_cols=52  Identities=15%  Similarity=0.110  Sum_probs=38.7

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      |.+.|.+.++  +++|+++++|++|..++  ++++ |++. |++++||.||.|.+...
T Consensus       130 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          130 LRAILLNSLE--NDTVIWDRKLVMLEPGK--KKWT-LTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             HHHHHHHTSC--TTSEEESCCEEEEEECS--SSEE-EEETTSCCEEESEEEECSCTTC
T ss_pred             HHHHHHhhcC--CCEEEECCEEEEEEECC--CEEE-EEECCCcEEecCEEEECCCcch
Confidence            4445554443  37899999999999876  4454 6665 66899999999999854

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=84.67  E-value=1.8  Score=40.17  Aligned_cols=59  Identities=15%  Similarity=0.160  Sum_probs=42.9

Q ss_pred             hhhHHHHHHHHH-cC-CEEeccceeeeEEecCCCceEEEEEE-C---C--eEEecCEEEEeeChhh-HHHhh
Q 017658           87 KIFEPWMDSMRT-RG-CEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGIST-LQELI  149 (368)
Q Consensus        87 ~L~~~l~~~l~~-~G-~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g--~~~~ad~VV~a~p~~~-l~~ll  149 (368)
                      .|.+.|.+.+++ .| ++|+++++|++|.. ++ + |+ |.+ +   |  .+++||.||.|.+... +.+.+
T Consensus       108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~-~-v~-v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l  175 (410)
T 3c96_A          108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RD-G-RV-LIGARDGHGKPQALGADVLVGADGIHSAVRAHL  175 (410)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ET-T-EE-EEEEEETTSCEEEEEESEEEECCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CC-c-cE-EEEecCCCCCceEEecCEEEECCCccchhHHHh
Confidence            467778888776 36 48999999999988 53 4 54 333 2   5  4789999999999864 34444

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=84.56  E-value=1.8  Score=38.27  Aligned_cols=54  Identities=13%  Similarity=0.179  Sum_probs=42.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|+++++++ |+.|..++  +.++ +..+++++.+|+||+|++..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~--~~~~-v~~~~~~~~~~~lv~AtG~~  115 (320)
T 1trb_A           62 PLLMERMHEHATKFETEIIFDH-INKVDLQN--RPFR-LNGDNGEYTCDALIIATGAS  115 (320)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCC-EEEEECSS--SSEE-EEESSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEee-eeEEEecC--CEEE-EEeCCCEEEcCEEEECCCCC
Confidence            3577778888888999999997 99998765  4443 44457789999999999874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=84.50  E-value=1.5  Score=41.28  Aligned_cols=52  Identities=10%  Similarity=0.168  Sum_probs=42.3

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++++++++|+++.  +  ..   |.+ +|+++++|.||++++..
T Consensus       187 d~~~~~~~~~~l~~~gV~i~~~~~v~~~~--~--~~---v~~~~g~~~~~D~vl~a~G~~  239 (437)
T 4eqs_A          187 DADMNQPILDELDKREIPYRLNEEINAIN--G--NE---ITFKSGKVEHYDMIIEGVGTH  239 (437)
T ss_dssp             CGGGGHHHHHHHHHTTCCEEESCCEEEEE--T--TE---EEETTSCEEECSEEEECCCEE
T ss_pred             cchhHHHHHHHhhccceEEEeccEEEEec--C--Ce---eeecCCeEEeeeeEEEEecee
Confidence            45688899999999999999999999884  3  32   334 47899999999998864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=84.29  E-value=1.2  Score=44.24  Aligned_cols=53  Identities=13%  Similarity=0.147  Sum_probs=41.0

Q ss_pred             cCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhHHHhhhh
Q 017658           99 RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        99 ~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      .|++|++++.|++|..+++++++++|++.    |+  ++.||.||++++.-...+++..
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~  331 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN  331 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHT
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHh
Confidence            47999999999999987532478888763    43  6899999999998776666543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=84.23  E-value=2.5  Score=41.97  Aligned_cols=53  Identities=21%  Similarity=0.166  Sum_probs=34.2

Q ss_pred             CCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccccccCCCCchhHHHH
Q 017658          287 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEAL  346 (368)
Q Consensus       287 ~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~~~~~~~~  346 (368)
                      .++||||||+-..+  .  +.|-|+.+|+.|+......... .+..+.|  ++.+-++++
T Consensus       383 ~~~gLf~AGqinGt--t--GYeEAaaqGl~AG~nAa~~~~~-~~~~~~~--r~~ayiG~l  435 (651)
T 3ces_A          383 FIQGLFFAGQINGT--T--GYEEAAAQGLLAGLNAARLSAD-KEGWAPA--RSQAYLGVL  435 (651)
T ss_dssp             SSBTEEECSGGGTC--C--CHHHHHHHHHHHHHHHHHHHTT-CCCCCCC--TTTCHHHHH
T ss_pred             CCCCeEEEEEecCC--c--ChHHHHHHHHHHHHHHHHHhcC-CCCCCCC--hhhhhhhhH
Confidence            57999999988743  2  3456777888877666555542 4555555  445555555

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=83.52  E-value=0.69  Score=43.52  Aligned_cols=53  Identities=8%  Similarity=-0.048  Sum_probs=39.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC--eEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~a~p~~  143 (368)
                      +...+.+.+.++++|+++++++.|++|.  +  +++. +.. +|  +++.+|.||++++..
T Consensus       200 ~~~~~~l~~~l~~~GV~~~~~~~v~~v~--~--~~~~-~~~~~g~~~~i~~d~vi~~~G~~  255 (430)
T 3hyw_A          200 GASKRLVEDLFAERNIDWIANVAVKAIE--P--DKVI-YEDLNGNTHEVPAKFTMFMPSFQ  255 (430)
T ss_dssp             TTHHHHHHHHHHHTTCEEECSCEEEEEC--S--SEEE-EECTTSCEEEEECSEEEEECEEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCceEEEEe--C--CceE-EEeeCCCceEeecceEEEeccCC
Confidence            3455667778899999999999999984  3  3343 332 23  479999999998754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=82.86  E-value=1.4  Score=40.38  Aligned_cols=51  Identities=18%  Similarity=0.199  Sum_probs=40.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      ...+.+.+.+.+++.|++|+++++|++|.  .  ..   |.++ |+ +++|.||++++..
T Consensus       182 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~--~~---v~~~~g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          182 DEELSNMIKDMLEETGVKFFLNSELLEAN--E--EG---VLTNSGF-IEGKVKICAIGIV  233 (367)
T ss_dssp             CHHHHHHHHHHHHHTTEEEECSCCEEEEC--S--SE---EEETTEE-EECSCEEEECCEE
T ss_pred             CHHHHHHHHHHHHHCCCEEEcCCEEEEEE--e--eE---EEECCCE-EEcCEEEECcCCC
Confidence            34577888888999999999999999996  3  32   3454 55 9999999998864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=82.83  E-value=3.7  Score=40.66  Aligned_cols=53  Identities=23%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             CCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccccccCCCCchhHHHH
Q 017658          287 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEAL  346 (368)
Q Consensus       287 ~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~~~~~~~~  346 (368)
                      .++||||||+-..+  . |. |-|+.+|+.|+-.....+. +.+..+.|  ++.+=++++
T Consensus       388 ~~~gLf~AGqinGt--~-Gy-eEAaaqGl~AG~nAa~~~~-~~~~~~~~--r~~ayig~l  440 (637)
T 2zxi_A          388 KIRGLFHAGNFNGT--T-GY-EEAAGQGIVAGINAALRAF-GKEPIYLR--RDESYIGVM  440 (637)
T ss_dssp             SSBTEEECGGGGTB--C-SH-HHHHHHHHHHHHHHHHHHT-TCCCCCCC--TTTCHHHHH
T ss_pred             CCCCEEEeeecCCc--c-hH-HHHHHHHHHHHHHHHHHhc-CCCCCCCC--hhheehhhH
Confidence            47999999998843  2 34 4566677777655554443 24555444  344434443

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=82.43  E-value=1.8  Score=40.72  Aligned_cols=51  Identities=8%  Similarity=-0.047  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C-----CeEEecCEEEEeeCh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-----KETYSAGAVVLAVGI  142 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~-----g~~~~ad~VV~a~p~  142 (368)
                      +...+.+.++++|++++++++|++|.-    ++++....  +     ++++.+|.||++.+.
T Consensus       210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~----~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          210 SKGILTKGLKEEGIEAYTNCKVTKVED----NKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEET----TEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEC----CeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            667788889999999999999999963    22331111  2     357899999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=82.25  E-value=2.4  Score=37.73  Aligned_cols=56  Identities=20%  Similarity=0.122  Sum_probs=41.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEec--CCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~--~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+.+.+.+++.|++++. ++|++|..+  ++ +.+..+..+|+++.+|+||+|++..
T Consensus        65 ~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~-~~~~v~~~~g~~~~~~~vv~AtG~~  122 (325)
T 2q7v_A           65 MELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSH-PYPFTVRGYNGEYRAKAVILATGAD  122 (325)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSS-SCCEEEEESSCEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCC-ceEEEEECCCCEEEeCEEEECcCCC
Confidence            35777888888889999998 689999876  42 2122223457789999999999974

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=81.65  E-value=1.1  Score=41.16  Aligned_cols=47  Identities=21%  Similarity=0.193  Sum_probs=36.4

Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ..+.+++.|++++++++|+.|..+.  ..|   ..+|+++.+|++|+|++..
T Consensus        66 ~~~~~~~~~v~~~~g~~v~~id~~~--~~V---~~~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           66 SLDWYRKRGIEIRLAEEAKLIDRGR--KVV---ITEKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             CHHHHHHHTEEEECSCCEEEEETTT--TEE---EESSCEEECSEEEECCCEE
T ss_pred             CHHHHHhCCcEEEECCEEEEEECCC--CEE---EECCcEEECCEEEECCCCC
Confidence            3445667899999999999997654  333   3567789999999999863

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=81.62  E-value=0.43  Score=44.29  Aligned_cols=44  Identities=20%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             HHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      +++.|++|+++++|+.+..+++ + . .|.++ |+++.+|.||++.|.
T Consensus       212 l~~~gi~v~~~~~v~~v~~~~~-~-~-~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          212 TENALIEWHPGPDAAVVKTDTE-A-M-TVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             STTCSEEEECTTTTCEEEEETT-T-T-EEEETTSCEEECSEEEECCCE
T ss_pred             HHhcCcEEEeCceEEEEEeccc-c-e-EEEcCCCcEEEeeEEEEecCc
Confidence            4667999999999999988763 3 2 35555 789999999998765

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=81.38  E-value=1.5  Score=42.55  Aligned_cols=57  Identities=14%  Similarity=0.155  Sum_probs=42.1

Q ss_pred             HHHHcCCEEeccceeeeEEecCC-CceEEEEEEC---Ce--EE---ecCEEEEeeChhhHHHhhhh
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVCG---KE--TY---SAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~-~g~v~~v~~~---g~--~~---~ad~VV~a~p~~~l~~ll~~  151 (368)
                      .+++.|.+|++++.|++|..+++ ++++++|.+.   |+  ++   .++.||++++.-...+|+..
T Consensus       203 ~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~  268 (536)
T 1ju2_A          203 KGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLL  268 (536)
T ss_dssp             GSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred             hhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHH
Confidence            34567899999999999998752 1378888762   44  34   46889999998767666543

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=80.72  E-value=47  Score=32.91  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=27.9

Q ss_pred             CCceEEeccccccCCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017658          288 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       288 ~~~L~laGd~~~~~~~~--~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      .++++|+||..+...|.  .+|+-++..+...+..|...+.
T Consensus       350 ~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~  390 (665)
T 1pn0_A          350 DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLT  390 (665)
T ss_dssp             TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHc
Confidence            37899999999754332  5677788888777777766553

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=80.25  E-value=2.5  Score=40.80  Aligned_cols=51  Identities=10%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             HHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeCh
Q 017658           90 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGI  142 (368)
Q Consensus        90 ~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~  142 (368)
                      ..+.+.+++ .|++|++++.|++|..++  +++.+|.+.    |+  ++.+|.||++++.
T Consensus       394 ~~l~~~l~~~~gV~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  451 (521)
T 1hyu_A          394 QVLQDKVRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHSVALAGIFVQIGL  451 (521)
T ss_dssp             HHHHHHHTTCTTEEEECSEEEEEEEECS--SSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHHHHhcCCCcEEEeCCEEEEEEcCC--CcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence            345566777 589999999999998655  566666652    43  6899999998774

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=80.05  E-value=2.7  Score=39.89  Aligned_cols=44  Identities=14%  Similarity=0.126  Sum_probs=32.6

Q ss_pred             cCCEEeccceeeeEEecCCCc-eEEEEEE----------------CC--eEEecCEEEEeeChh
Q 017658           99 RGCEFLDGRRVTDFIYDEERC-CISDVVC----------------GK--ETYSAGAVVLAVGIS  143 (368)
Q Consensus        99 ~G~~i~~~t~V~~I~~~~~~g-~v~~v~~----------------~g--~~~~ad~VV~a~p~~  143 (368)
                      .|++|++++.+++|.-+++ + ++.+|++                +|  +++.+|.||.+++..
T Consensus       270 ~gv~~~~~~~~~~i~~~~~-~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~  332 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYK  332 (460)
T ss_dssp             EEEEEECSEEEEEEEECTT-SSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEE
T ss_pred             ceEEEECCCChheEEcCCC-CceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCC
Confidence            7899999999999976533 4 5655543                23  468999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.002

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 275 PGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD-YLG 326
                 +       P LF AG+     + +     + ++GL  A R+ D +LG
Sbjct: 398 ITPGPSIPGAPQPIPRLFFAGEHTIRNYPAT-VHGALLSGLREAGRIADQFLG 449

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 15/137 (10%), Positives = 43/137 (31%)

Query: 1   MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAAT 60
           +++  + D +       D  T  E++ +FG        +   +         +Q +  + 
Sbjct: 151 ISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSF 210

Query: 61  LGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 120
             IL +     +              ++ + +       G  ++    + + +Y ++   
Sbjct: 211 ERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGK 270

Query: 121 ISDVVCGKETYSAGAVV 137
              V     T+ A  V+
Sbjct: 271 FEGVKTKLGTFKAPLVI 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.18
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.05
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.56
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.51
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.49
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.25
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.17
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.87
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.65
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.64
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.54
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.49
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.48
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.43
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.41
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.25
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.22
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.14
d2ivda2	108	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.12
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.07
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.99
d2dw4a3	109	Lysine-specific histone demethylase 1, LSD1 {Human	96.89
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.87
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.81
d2iida2	113	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.79
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	96.76
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.7
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	96.65
d1b5qa2	112	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.64
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.53
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.46
d1seza2	112	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.38
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.3
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.3
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.26
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.23
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.19
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.18
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.36
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.74
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.28
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.97
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	93.86
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.64
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	92.87
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.34
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	92.33
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.22
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	91.74
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.19
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.32
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	90.03
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	89.78
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.39
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	88.61
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	87.26
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	85.67
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.26
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	83.9
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	83.3
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.16
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	80.82
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	80.22

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=1.2e-10  Score=100.31  Aligned_cols=123  Identities=14%  Similarity=0.149  Sum_probs=85.9

Q ss_pred             hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhhHHH
Q 017658           15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPW   92 (368)
Q Consensus        15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L~~~l   92 (368)
                      ..++..++.+++++.++++.+.+ ++.............+.++...+..+..+.  ........+.+++||+ ..|+++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l  242 (297)
T d2bcgg1         165 LDLDKNTMDEVYYKFGLGNSTKE-FIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGL-GELPQGF  242 (297)
T ss_dssp             CCTTTSBHHHHHHHTTCCHHHHH-HHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCT-THHHHHH
T ss_pred             hcccchhhhhhhhhhccCHHHHH-HHHHHHhhhccccccchhhhhhhhhhhhhhhcccccccCcceeccCcH-HHHHHHH
Confidence            45678899999999888887654 443322222222333444444333322221  1111123456889997 4799999


Q ss_pred             HHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEe
Q 017658           93 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA  139 (368)
Q Consensus        93 ~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a  139 (368)
                      ++.++++|++|++|++|++|..++++++|.+|+.+|+++.||+||++
T Consensus       243 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         243 ARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             HHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             HHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            99999999999999999999887554788888889999999999997

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.8e-09  Score=96.40  Aligned_cols=128  Identities=17%  Similarity=0.071  Sum_probs=90.7

Q ss_pred             hhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH-----hhcCCCcceeeecCCcchh
Q 017658           13 AWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----LAHQKNFDLVWCRGTLREK   87 (368)
Q Consensus        13 ~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-----~~~~~~~~~~~~~GG~~~~   87 (368)
                      ....++..|+.+++++...... ...++..+........+...++......+....     ...........+.+|+ ..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  211 (383)
T d2v5za1         134 LAEEWDNMTMKELLDKLCWTES-AKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGS-GQ  211 (383)
T ss_dssp             THHHHHTSBHHHHHHHHCSSHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCT-HH
T ss_pred             hhhhhhhhHHHHHHHHhccchH-HHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccch-hH
Confidence            3467889999999998777665 456777777777888888888877665543211     1111122223456775 46


Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL  148 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l  148 (368)
                      +++.++   ++.|++|++|++|++|..++  ++|. |++. |++++||+||+|+|+..+.++
T Consensus       212 ~~~~l~---~~~g~~i~~~~~v~~I~~~~--~~v~-v~~~~g~~~~ad~vI~a~p~~~~~~~  267 (383)
T d2v5za1         212 VSERIM---DLLGDRVKLERPVIYIDQTR--ENVL-VETLNHEMYEAKYVISAIPPTLGMKI  267 (383)
T ss_dssp             HHHHHH---HHHGGGEEESCCEEEEECSS--SSEE-EEETTSCEEEESEEEECSCGGGGGGS
T ss_pred             HHHHHH---HHcCCeEEecCcceEEEecC--CeEE-EEECCCCEEECCEEEECCCHHHHhhC
Confidence            777775   46689999999999999887  5565 5555 778999999999998765543

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=8.5e-07  Score=82.62  Aligned_cols=130  Identities=12%  Similarity=0.095  Sum_probs=96.1

Q ss_pred             cccCCchhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCC
Q 017658            6 DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGT   83 (368)
Q Consensus         6 ~~~~~~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG   83 (368)
                      ++......+..++++|+.+||++++++++..+.+.    +++-...-++..+...+..++.++  ++.-+.+.+.||..|
T Consensus       299 ~~~~~~~~~~~~~~~~~~e~l~~~~l~~~~~~~i~----~aial~~~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG  374 (491)
T d1vg0a1         299 EYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVL----HSIAMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYG  374 (491)
T ss_dssp             TGGGCHHHHHTTTTSBHHHHHTTSSSCHHHHHHHH----HHTTC--CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTC
T ss_pred             hccCCccccccccCCcHHHHHHHcCCChHHHHHHH----hheeccCCCCccHHHHHHHHHHHHHHHHhhCCCCeEeecCC
Confidence            34445667888999999999999999998776443    222222233445556666666664  233334567789988


Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEee
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAV  140 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~  140 (368)
                      .++ |++++.+...=.||...|+++|++|.++.+++++.+|..+ |+++.++.||+.-
T Consensus       375 ~gE-ipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         375 QGE-LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             TTH-HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             cch-HHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence            775 9999999988889999999999999997543778888876 7899999998753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.49  E-value=8.8e-07  Score=77.42  Aligned_cols=130  Identities=17%  Similarity=0.099  Sum_probs=84.9

Q ss_pred             hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH---------------hhc---------
Q 017658           16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII---------------LAH---------   71 (368)
Q Consensus        16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~---------------~~~---------   71 (368)
                      .....++.+++.+. ...........++....+...++..+.......+....               ...         
T Consensus       129 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (347)
T d2ivda1         129 EGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTA  207 (347)
T ss_dssp             TTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCS
T ss_pred             ccccccHHHHHHhh-hhcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhcccccccccc
Confidence            34567888888864 45556666777877777777776666554333222110               000         


Q ss_pred             -CCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC--eEEecCEEEEeeChhhHHH
Q 017658           72 -QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQE  147 (368)
Q Consensus        72 -~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~a~p~~~l~~  147 (368)
                       ........+.||+ ..++++|.+.   .|++|++|++|++|..++  ++++.+.. ++  ++++||.||+|+|+..+.+
T Consensus       208 ~~~~~~~~~~~~g~-~~~~~~l~~~---~g~~i~~~~~V~~I~~~~--~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~  281 (347)
T d2ivda1         208 PKLSGALSTFDGGL-QVLIDALAAS---LGDAAHVGARVEGLARED--GGWRLIIEEHGRRAELSVAQVVLAAPAHATAK  281 (347)
T ss_dssp             CCCCCCEEEETTCT-HHHHHHHHHH---HGGGEESSEEEEEEECC----CCEEEEEETTEEEEEECSEEEECSCHHHHHH
T ss_pred             ccccCcccccCCch-HHHHHHHHHH---hhcccccCCEEEEEEEeC--CeEEEEEEcCCeEEEEECCEEEECCCHHHHHH
Confidence             0012233457886 5688888654   478999999999999877  44443333 34  4789999999999999999


Q ss_pred             hhhhc
Q 017658          148 LIKNS  152 (368)
Q Consensus       148 ll~~~  152 (368)
                      |+++.
T Consensus       282 Ll~~~  286 (347)
T d2ivda1         282 LLRPL  286 (347)
T ss_dssp             HHTTT
T ss_pred             hccCC
Confidence            98864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.3e-07  Score=81.73  Aligned_cols=48  Identities=21%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             cCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          278 YKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       278 ~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ...+|...++++|||||||+++++|+ ++||||+.||++||++|++.+.
T Consensus       401 ~~~~~~~~~~~~~l~fAGe~t~~~~~-g~~~GA~~SG~~aA~~Il~~~~  448 (449)
T d2dw4a2         401 GPSIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQFL  448 (449)
T ss_dssp             ---------CCCCEEECSGGGCTTSC-SSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccchhhcCCCCCEEEEcCCcCCCCc-eehHHHHHHHHHHHHHHHHHhc
Confidence            34566677899999999999998887 7999999999999999998763

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.17  E-value=5.5e-06  Score=73.38  Aligned_cols=69  Identities=10%  Similarity=0.030  Sum_probs=51.3

Q ss_pred             eeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEE-E-C--CeEEecCEEEEeeChhhHHHhhhh
Q 017658           77 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-C-G--KETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        77 ~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~-~-~--g~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      ...+.||+ ..++++|.   ++.|++|+++++|++|..++  ++++.+. . +  +++++||+||+|+|+..+..+...
T Consensus       230 ~~~~~~~~-~~l~~~l~---~~~g~~i~~~~~V~~I~~~~--~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~  302 (370)
T d2iida1         230 FDEIVDGM-DKLPTAMY---RDIQDKVHFNAQVIKIQQND--QKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFN  302 (370)
T ss_dssp             EEEETTCT-THHHHHHH---HHTGGGEESSCEEEEEEECS--SCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEE
T ss_pred             cccchhhH-HHHHHHHH---HhcCCccccCceEEEEEEeC--CeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccC
Confidence            34567885 56888775   56789999999999999887  4554322 2 1  357999999999999888765333

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.87  E-value=1.6e-05  Score=69.84  Aligned_cols=62  Identities=13%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      ..++..+.+.+++.|++|+.+++|++|..++  +++++|.++.++++||+||+|++++.- +|++
T Consensus       148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~--~~v~~V~T~~g~i~a~~VV~aaG~~s~-~l~~  209 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTADGVIPADIVVSCAGFWGA-KIGA  209 (305)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECCGGGHH-HHHH
T ss_pred             hhhhhhHHhhhhcccccccCCceEEEEEEeC--CEEEEEeccceeEECCEEEEecchhHH-HHHH
Confidence            4588888889999999999999999999988  789999999889999999999998743 3444

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.65  E-value=5.9e-05  Score=56.33  Aligned_cols=57  Identities=12%  Similarity=0.174  Sum_probs=47.4

Q ss_pred             CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEee
Q 017658           82 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAV  140 (368)
Q Consensus        82 GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~  140 (368)
                      .++.+.+.+.+.+.++++|++|++++.|++|..+++ ++++ |.++ |++++||.||+|+
T Consensus        60 ~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~-~~~~-v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          60 RGFDHTLREELTKQLTANGIQILTKENPAKVELNAD-GSKS-VTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTT-SCEE-EEETTSCEEEESEEEECS
T ss_pred             cccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCC-CeEE-EEECCCcEEEeCEEEEeC
Confidence            345567899999999999999999999999987665 6554 6666 7889999999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.64  E-value=8.3e-05  Score=56.88  Aligned_cols=57  Identities=18%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeC
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  141 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p  141 (368)
                      .+.+.+.+.+.++++|+++++|+.|++|....++++++.|.++ |++++||.||++++
T Consensus        76 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          76 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             chhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            4557777888899999999999999999886543667777776 67899999999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=7.9e-05  Score=57.30  Aligned_cols=56  Identities=18%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      +.+.+.+.+.+.++++|+++++|+.|++|..++  +++. |.++ |+++.||.||+|++.
T Consensus        81 ~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~--~~~~-v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          81 LPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLL-IKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             SCHHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEEE-EEETTSCEEEESEEEECCCE
T ss_pred             CCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecC--CEEE-EEECCCCEEECCEEEEeecC
Confidence            455677888888999999999999999998876  6554 6665 789999999999863

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.54  E-value=9.2e-05  Score=55.18  Aligned_cols=57  Identities=14%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p  141 (368)
                      ++...+.+.+.+.++++|++|++++.|++|..+++ |. ..+.++ |+++.||.||+|++
T Consensus        59 ~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~-g~-~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          59 GFDSELRKQLTEQLRANGINVRTHENPAKVTKNAD-GT-RHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTT-SC-EEEEETTSCEEEESEEEECSC
T ss_pred             cccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCC-CE-EEEEECCCCEEEcCEEEEecC
Confidence            45567889999999999999999999999987764 54 446665 78999999999875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.49  E-value=9.2e-05  Score=63.87  Aligned_cols=62  Identities=19%  Similarity=0.393  Sum_probs=52.3

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      ..++..|.+.++++|++|+++++|++|..++  +++ .|.++++++.||+||+|++++.- +|++.
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v-~V~t~~g~i~a~~VViAaG~~s~-~l~~~  211 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISP--DSV-KIETANGSYTADKLIVSMGAWNS-KLLSK  211 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECS--SCE-EEEETTEEEEEEEEEECCGGGHH-HHGGG
T ss_pred             cccccccccccccccccccCCcEEEEEEEEC--CEE-EEEECCcEEEcCEEEECCCCcch-hhHHh
Confidence            4688999999999999999999999999987  555 58888889999999999998754 35443

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.48  E-value=0.00015  Score=61.26  Aligned_cols=58  Identities=17%  Similarity=0.302  Sum_probs=50.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST  144 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~  144 (368)
                      ...+.+.|.+.+++.|++|+++++|++|..++  +++.+|.++ |++++||.||+|++...
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC--CEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            45688999999999999999999999999887  677777776 77999999999998753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00016  Score=53.72  Aligned_cols=57  Identities=11%  Similarity=0.222  Sum_probs=47.2

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p  141 (368)
                      .+.+.+.+.+.+.++++|+++++++.|++|..+++ +.++ +.++ |+++++|.||+|++
T Consensus        59 ~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-~~~~-v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          59 SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD-GSLT-LELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             TSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTT-SCEE-EEETTSCEEEESEEEECSC
T ss_pred             hcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-cEEE-EEECCCCEEEcCEEEEecC
Confidence            34566888999999999999999999999987765 6554 6665 77999999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.41  E-value=8.5e-05  Score=63.82  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST  144 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~  144 (368)
                      ..++..|.+.++++|++|+.+++|++|..++  + +++|.++++++.||.||+|++++.
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~-~~~V~t~~g~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--E-ALFIKTPSGDVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSS--S-SEEEEETTEEEEEEEEEECCGGGT
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeec--c-eEEEecCCeEEEcCEEEECCCccH
Confidence            4588899999999999999999999998765  3 467888888999999999999875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.25  E-value=0.00039  Score=51.63  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=45.5

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEE-ecCEEEEee
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETY-SAGAVVLAV  140 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~-~ad~VV~a~  140 (368)
                      ++...+.+.+.+.++++|+++++++.|++|...++ ++++ +.+. |+++ .+|.||+|+
T Consensus        60 ~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~~-v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          60 KFDESVINVLENDMKKNNINIVTFADVVEIKKVSD-KNLS-IHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESST-TCEE-EEETTSCEEEEESEEEECC
T ss_pred             cccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCC-CeEE-EEECCCCEEEeCCEEEEeC
Confidence            45577899999999999999999999999987765 6554 6665 6666 579999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.22  E-value=0.00046  Score=51.43  Aligned_cols=58  Identities=22%  Similarity=0.302  Sum_probs=45.8

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-CeEEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~~~~ad~VV~a~p  141 (368)
                      ++.+.+.+.+.+.++++|.++++++.|++|..+++ +++..+..   + +++++||.||+|++
T Consensus        60 ~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~-~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          60 IKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccccchhhhhhhhhhccccEEEcCCEEEEEEecCC-ceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            33456888888999999999999999999998765 66554433   2 35799999999874

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.14  E-value=0.00032  Score=52.66  Aligned_cols=53  Identities=25%  Similarity=0.351  Sum_probs=44.6

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEee
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAV  140 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~  140 (368)
                      .+.+.+.+.+.++++|+++++++.|++|..+   ++++.|..+|++++||.||+|+
T Consensus        71 d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          71 DKEFTDVLTEEMEANNITIATGETVERYEGD---GRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEESCCEEEEECS---SBCCEEEESSCEEECSEEEECS
T ss_pred             chhhHHHHHHHhhcCCeEEEeCceEEEEEcC---CCEEEEEeCCCEEECCEEEEEC
Confidence            4568888888999999999999999999753   4466677889999999999874

>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.12  E-value=0.0028  Score=46.06  Aligned_cols=102  Identities=12%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             ccceEEEEEEecCCCCCC-CCCceeecCCC--CccceeeeccccccccCCCCCeEEEEEeecC--CCCCCCCHHHHHHHH
Q 017658          168 SIDVVSVKLWFDKKVTVP-NVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKA  242 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~--~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~e~~~~~  242 (368)
                      |.++..+++.|++..... ..+..+.....  ......++ |+..+...+++..++.+.+...  ..+.+.+++++++.+
T Consensus         2 Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg~~f~-S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~~l~~~a   80 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHA-STTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALA   80 (108)
T ss_dssp             BCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEH-HHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHH
T ss_pred             CCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEEEEEE-ccccccccCCCCEEEEEEeCCCCCcccccCCHHHHHHHH
Confidence            678889999998764321 22333322111  11122344 3333444434555554433322  234567899999999


Q ss_pred             HHHHhhhccCCCCCceeeeEEeecCCCccc
Q 017658          243 VSYLSKCIKDFSTATVMDHKIRRFPKSLTH  272 (368)
Q Consensus       243 ~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~  272 (368)
                      +++|+++++ +.. +++...+.+|+.++|+
T Consensus        81 ~~dL~~~lg-i~~-~P~~~~v~rw~~aiPQ  108 (108)
T d2ivda2          81 REELKALAG-VTA-RPSFTRVFRWPLGIPQ  108 (108)
T ss_dssp             HHHHHHHHC-CCS-CCSEEEEEEESSCCBC
T ss_pred             HHHHHHHhC-CCC-CCcEEEeeECCCCcCc
Confidence            999999994 443 5777888999998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.07  E-value=0.00096  Score=49.56  Aligned_cols=56  Identities=20%  Similarity=0.303  Sum_probs=44.7

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C-C--eEEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-K--ETYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~-g--~~~~ad~VV~a~p  141 (368)
                      ++...+.+.+.+.++++|.+|+++++|++|..+++  +++ |++ + +  +++.||.||+|++
T Consensus        60 ~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~v~-v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          60 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNK--QVT-VKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSS--CEE-EEEESSSEEEEEEESEEEECSC
T ss_pred             cccchhHHHHHHHHHhcCceeecCcEEEEEEEeCC--EEE-EEEEECCCCEEEECCEEEEeeC
Confidence            45567899999999999999999999999998873  344 333 2 2  4789999999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00088  Score=50.02  Aligned_cols=56  Identities=13%  Similarity=0.262  Sum_probs=43.7

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEe
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLA  139 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a  139 (368)
                      .+...+.+.+.+.++++|++|++|+.|++|..+++ +....++..    +  ++++||.|++|
T Consensus        61 ~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          61 SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDD-KNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCC-CcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            45567999999999999999999999999998765 433334432    2  37899999976

>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0012  Score=47.74  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             ccceEEEEEEecCCCCCCCCCc-eeecCCCCccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHH
Q 017658          168 SIDVVSVKLWFDKKVTVPNVSN-ACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVS  244 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~  244 (368)
                      +....++.+.|++++|.+.... .....+....+.+.+..      ...+..++.....  .+..+..++++++++.+++
T Consensus         2 ~G~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l~   75 (109)
T d2dw4a3           2 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFW------NLYKAPILLALVAGEAAGIMENISDDVIVGRCLA   75 (109)
T ss_dssp             ECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTTTCEEE------CC--CCEEEEEECHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CChhEEEEEEECCCCCCCCCCEeEEEecCCCCceEEeecc------CCCCCCEEEEEECcHHHHHHHhcCHHHHHHHHHH
Confidence            3456799999999998654221 11111111111111111      1012334433222  2345677899999999999


Q ss_pred             HHhhhccCCCCCceeeeEEeecCCC
Q 017658          245 YLSKCIKDFSTATVMDHKIRRFPKS  269 (368)
Q Consensus       245 ~l~~~~p~~~~~~i~~~~~~~~~~~  269 (368)
                      .|.++||+....+++...+.+|..+
T Consensus        76 ~L~~~~~~~~~~~~~~~~~~~W~~d  100 (109)
T d2dw4a3          76 ILKGIFGSSAVPQPKETVVSRWRAD  100 (109)
T ss_dssp             HHHHHHCTTTCCCCSEEEECCTTTC
T ss_pred             HHHHHhCccccCcccEEEEeccCCC
Confidence            9999998654335666667777655

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.87  E-value=0.0021  Score=47.33  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEE-EEECC--eEEecCEEEEe
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCGK--ETYSAGAVVLA  139 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~-v~~~g--~~~~ad~VV~a  139 (368)
                      ++...+.+.+.+.++++|++|++++.|++|..+++ + ++. +..+|  ++++||.||++
T Consensus        60 ~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~-~-~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          60 GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEERED-G-VTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETT-E-EEEEEEETTEEEEEEESEEEEC
T ss_pred             cccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCC-E-EEEEEEeCCCEEEEEeEEEEEC
Confidence            44456889999999999999999999999998773 4 432 22334  36899999874

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0011  Score=48.30  Aligned_cols=97  Identities=10%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             ccceEEEEEEecCCCCCCCCCc-eeecCC-CCccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHH
Q 017658          168 SIDVVSVKLWFDKKVTVPNVSN-ACSGFG-DSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAV  243 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~  243 (368)
                      +..+.|+.+.|++++|.+.... .....+ ......+++.+...     .+..++.....  .+..+..++++++++.++
T Consensus         2 mG~~~Kv~l~f~~~FW~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~vL~~~~~G~~a~~~~~ls~~e~~~~~l   76 (112)
T d2v5za2           2 LGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPE-----GNYAAIMGFILAHKARKLARLTKEERLKKLC   76 (112)
T ss_dssp             BCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECCCTT-----SCSCEEEEEEETHHHHHHTTSCHHHHHHHHH
T ss_pred             chheEEEEEEcCCCCCCCCCceeeEEecCCCCcEEEEccCcCcc-----CCCcEEEEEeCcHHHHHHHhCCHHHHHHHHH
Confidence            3457899999999999654311 111111 11112223322111     12334433333  223467789999999999


Q ss_pred             HHHhhhccCCCCCceeeeEEeecCCC
Q 017658          244 SYLSKCIKDFSTATVMDHKIRRFPKS  269 (368)
Q Consensus       244 ~~l~~~~p~~~~~~i~~~~~~~~~~~  269 (368)
                      +.|+++||+....+++...+.+|..+
T Consensus        77 ~~L~~~~g~~~~~~~~~~~~~~W~~d  102 (112)
T d2v5za2          77 ELYAKVLGSLEALEPVHYEEKNWCEE  102 (112)
T ss_dssp             HHHHHHHTCGGGGCCSEEEEEEGGGC
T ss_pred             HHHHHHhCccccCCccEEEEcccCCC
Confidence            99999998643225666777778654

>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.79  E-value=0.0017  Score=47.48  Aligned_cols=97  Identities=13%  Similarity=-0.027  Sum_probs=56.0

Q ss_pred             ccceEEEEEEecCCCCCCCCCc-eeecCCCCccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHH
Q 017658          168 SIDVVSVKLWFDKKVTVPNVSN-ACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVS  244 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~  244 (368)
                      |.+..|+.+.|++++|.+.... .....+......++. +..    ...+..++.....  .+..+..++++++++.+++
T Consensus         2 y~~~~Kv~l~f~~~FW~~~g~~~~~~~td~~~~~~~~~-~~~----~~~~~~vL~~~~~g~~a~~~~~l~~e~~~~~~l~   76 (113)
T d2iida2           2 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYP-NHN----FTNGVGVIIAYGIGDDANFFQALDFKDCADIVFN   76 (113)
T ss_dssp             EECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECC-SSC----CTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHH
T ss_pred             CccEEEEEEEcCCCCCCCcCCEeeEEEeCCCceEEEeC-CCC----CCCCceEEEEEeCCchhHHHHcCCHHHHHHHHHH
Confidence            5678899999999999654211 111112222222221 111    1123345443322  3456778899999999999


Q ss_pred             HHhhhccCCCCC---ceeeeEEeecCCC
Q 017658          245 YLSKCIKDFSTA---TVMDHKIRRFPKS  269 (368)
Q Consensus       245 ~l~~~~p~~~~~---~i~~~~~~~~~~~  269 (368)
                      .|+++||.....   .++...+.+|..+
T Consensus        77 ~L~~~~~~~~~~~~~~~~~~~~~~W~~d  104 (113)
T d2iida2          77 DLSLIHQLPKKDIQSFCYPSVIQKWSLD  104 (113)
T ss_dssp             HHHHHHTCCHHHHHHHEEEEEEEEGGGC
T ss_pred             HHHHHcCCcccccccccCeEEEeecCCC
Confidence            999999875421   2445556667544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.0015  Score=55.21  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEE-EEEECCeEEecCEEEEeeChh
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~-~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ++... .+.+.+.|.+.+++.|++|+++++|++|...++...+. .+..++++++||+||+|++-.
T Consensus       103 ~~~~~-a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~  167 (253)
T d2gqfa1         103 FCDEG-AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGL  167 (253)
T ss_dssp             EETTC-THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCS
T ss_pred             ccccc-hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcc
Confidence            44444 45799999999999999999999999998865423332 244568899999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.75  E-value=0.002  Score=47.99  Aligned_cols=57  Identities=18%  Similarity=0.187  Sum_probs=43.7

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecCEEEEee
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAV  140 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~a~  140 (368)
                      ++...+.+.+.+.+++.|++|++|+.|++|..+++ +....+...  |+  +++||.|++|+
T Consensus        63 ~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          63 TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGD-GVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSS-SEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhhcchhhhhhhhhcccceEEcCCceEEEEEccC-eEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            44567889999999999999999999999998764 532234443  33  58999999874

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.70  E-value=0.00064  Score=57.06  Aligned_cols=40  Identities=10%  Similarity=0.332  Sum_probs=35.1

Q ss_pred             CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          286 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       286 ~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ++.+|+|++||++++.++ ++++||+.||+.||+.|+..+.
T Consensus       304 ~~~~~v~~~GD~~~~~~~-~~~~gA~~sG~~aA~~l~~~~~  343 (347)
T d1b5qa1         304 APVGRVYFTGEHTSEHYN-GYVHGAYLSGIDSAEILINCAQ  343 (347)
T ss_dssp             CCBTTEEECSGGGCSSCT-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEccccCcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999987667 6889999999999999998875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.65  E-value=0.0021  Score=55.71  Aligned_cols=57  Identities=19%  Similarity=0.247  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~  143 (368)
                      ..++..+.+.+.+.|++|+++++|++|..+++ |+|.+|.+.   ++  .+.|+.||+|++-.
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~-G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  206 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGF  206 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcc-cccccccccccccceeEeecCeEEEccCcc
Confidence            34788888889999999999999999988765 789998764   33  58999999999864

>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.64  E-value=0.0022  Score=46.60  Aligned_cols=96  Identities=14%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             cceEEEEEEecCCCCCCCCCceeec---CCCCccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHH
Q 017658          169 IDVVSVKLWFDKKVTVPNVSNACSG---FGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAV  243 (368)
Q Consensus       169 ~~~~~v~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~  243 (368)
                      ..+.|+.|.|++++|++........   .+........+...     ...+..++.....  .+..+..++++++++.++
T Consensus         3 G~~~Ki~l~F~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vL~~~~~G~~a~~~~~l~~~~~~~~~l   77 (112)
T d1b5qa2           3 AVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEK-----QYPDANVLLVTVTDEESRRIEQQSDEQTKAEIM   77 (112)
T ss_dssp             ECEEEEEEECSSCCSCCSTTCSEEEEECSSTTSSCEEEECTT-----TSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             ccEEEEEEEECCCCCCCCCCEEEEEeecCCCCeeEEEEEccc-----CCCCCCEEEEEeCcHHHHHHHhCCHHHHHHHHH
Confidence            4567899999999986543211111   11111111122111     1123445444333  233466789999999999


Q ss_pred             HHHhhhccCCCCCceeeeEEeecCCC
Q 017658          244 SYLSKCIKDFSTATVMDHKIRRFPKS  269 (368)
Q Consensus       244 ~~l~~~~p~~~~~~i~~~~~~~~~~~  269 (368)
                      +.|+++||+....+++...+.+|...
T Consensus        78 ~~L~~~~~~~~~~~~~~~~~t~W~~d  103 (112)
T d1b5qa2          78 QVLRKMFPGKDVPDATDILVPRWWSD  103 (112)
T ss_dssp             HHHHHHCTTSCCCCCSEEECCCTTTC
T ss_pred             HHHHHHhCcccccCCCEEEeccCCCC
Confidence            99999998654335666666667554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.53  E-value=0.0019  Score=56.54  Aligned_cols=57  Identities=23%  Similarity=0.269  Sum_probs=47.9

Q ss_pred             chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeCh
Q 017658           85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGI  142 (368)
Q Consensus        85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~  142 (368)
                      ...+.+.|.+.+.++|++|+++++|++|..+++ |+|.+|.+.   ++  .+.|+.||+|++-
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~-G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG  212 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGG  212 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS-SCCCEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeeccccccccc-ccccceEEEeecccEEEEeCCeEEEcCCC
Confidence            356889999999999999999999999998765 888888763   33  5899999999885

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.46  E-value=0.0063  Score=51.77  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCc---eEEEEEEC------CeEEecCEEEEeeChhhHH
Q 017658           79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC---CISDVVCG------KETYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g---~v~~v~~~------g~~~~ad~VV~a~p~~~l~  146 (368)
                      ..+||+ +.|+++|++.+.  +++|+++++|++|..+.+..   ....|...      ++.+.||.||+|+|...+.
T Consensus       225 ~~~~g~-~~l~~~l~~~l~--~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~  298 (373)
T d1seza1         225 SFLGGM-QTLTDAICKDLR--EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVK  298 (373)
T ss_dssp             EETTCT-HHHHHHHHTTSC--TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHH
T ss_pred             eecccc-hHHHHHHHHHhc--cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhh
Confidence            456885 579999887664  78999999999998875310   11223221      3478999999999976555

>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.38  E-value=0.0054  Score=44.75  Aligned_cols=101  Identities=9%  Similarity=0.024  Sum_probs=58.5

Q ss_pred             ccceEEEEEEecCCCCCC--CCCceeecCCC-----CccceeeeccccccccCCCCCeEEEEEeecC--CCCCCCCHHHH
Q 017658          168 SIDVVSVKLWFDKKVTVP--NVSNACSGFGD-----SLAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQV  238 (368)
Q Consensus       168 ~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~e~  238 (368)
                      |.++..+.+.|++.-...  ..+..+.....     ......++ |+..+...+++..++.+.+...  .++.+.+++++
T Consensus         2 Ya~va~V~l~~~~~~~~~~~~GfG~LVP~~e~~~g~~~lg~~f~-S~~fp~r~p~~~~ll~~~~Gg~~~~~~~~~~d~~l   80 (112)
T d1seza2           2 YVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFS-SMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTEL   80 (112)
T ss_dssp             EEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEH-HHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHH
T ss_pred             CCcEEEEEEEEchHHcCCCCCceEEEeCCcccCCCceEEEEEEe-cccCCCcCCCCcEEEEEEECCCCCcccccCCHHHH
Confidence            667888899997763311  12333321110     01122344 3333444433444444333222  34567899999


Q ss_pred             HHHHHHHHhhhccCCCCCceeeeEEeecCCCcc
Q 017658          239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT  271 (368)
Q Consensus       239 ~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~  271 (368)
                      ++.++++|+++++- .. +++...+.+|+.++|
T Consensus        81 ~~~a~~dl~~~lgi-~~-~P~~~~v~rw~~aiP  111 (112)
T d1seza2          81 KEIVTSDLKQLLGA-EG-EPTYVNHLYWSKAFP  111 (112)
T ss_dssp             HHHHHHHHHHHHCB-CS-CCSSEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCC-CC-CccEEEEEECCcccC
Confidence            99999999999943 33 577778888988765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.30  E-value=0.0028  Score=46.53  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=40.9

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC--eEEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g--~~~~ad~VV~a~p  141 (368)
                      .+...+.+.+.+.++++|++++++++|++|.  +  +.......++  ++++||.||+|++
T Consensus        59 ~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~--~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          59 TYDSELTAPVAESLKKLGIALHLGHSVEGYE--N--GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             TSCHHHHHHHHHHHHHHTCEEETTCEEEEEE--T--TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             cccchhHHHHHHHHHhhcceEEcCcEEEEEc--C--CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            3455688899999999999999999999995  3  3222222222  4799999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.30  E-value=0.0037  Score=46.37  Aligned_cols=52  Identities=15%  Similarity=0.198  Sum_probs=41.2

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeC
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG  141 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p  141 (368)
                      +.+.+.+.+.+.++++|++|++++.|+++.  +  +.|  +..+|+++.||.||+|++
T Consensus        70 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~--~--~~v--~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          70 APATLADFVARYHAAQGVDLRFERSVTGSV--D--GVV--LLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             SCHHHHHHHHHHHHTTTCEEEESCCEEEEE--T--TEE--EETTSCEEECSEEEECSC
T ss_pred             CCHHHHHHHHHHHHHCCcEEEeCCEEEEEe--C--CEE--EECCCCEEECCEEEEeeC
Confidence            345678888888999999999999999874  3  533  234578999999999874

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.26  E-value=0.0031  Score=46.83  Aligned_cols=52  Identities=21%  Similarity=0.283  Sum_probs=43.0

Q ss_pred             cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeCh
Q 017658           84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI  142 (368)
Q Consensus        84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~  142 (368)
                      +.+.+.+.+.+.++++|+++++|+.|+++.  ++ +    +..+++.+++|.||+|++.
T Consensus        70 ~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~--~~-~----v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          70 LDEELSNMIKDMLEETGVKFFLNSELLEAN--EE-G----VLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             CCHHHHHHHHHHHHHTTEEEECSCCEEEEC--SS-E----EEETTEEEECSCEEEECCE
T ss_pred             CCHHHHHHHHHHHHHCCcEEEeCCEEEEEe--CC-E----EEeCCCEEECCEEEEEEEe
Confidence            456788889999999999999999999884  31 3    4567889999999999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0085  Score=44.53  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=43.4

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCce-EEEEEEC-C------eEEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC-ISDVVCG-K------ETYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~-v~~v~~~-g------~~~~ad~VV~a~p  141 (368)
                      ++...+.+.+.+.++++|++|++|++|++|..+++ |. +..+... |      ...++|.||+|++
T Consensus        60 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          60 SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLS-GLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETT-EEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             chhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-eEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            45567899999999999999999999999988764 42 2222222 2      2468999999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.19  E-value=0.0038  Score=46.59  Aligned_cols=56  Identities=16%  Similarity=0.197  Sum_probs=44.2

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C-C--eEEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K--ETYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~-g--~~~~ad~VV~a~p  141 (368)
                      .+...+.+.+.+.++++|++++++++|+++..+++ | +. |.+  . |  ++++||.|+.|++
T Consensus        64 ~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~-g-~~-v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          64 GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED-G-VY-VTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             TSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETT-E-EE-EEEESSSCCSSCEEESCEEECCC
T ss_pred             cchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCC-c-EE-EEEEeCCCCeEEEEcCEEEEecC
Confidence            34556888999999999999999999999998774 4 43 333  2 2  3699999999875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.18  E-value=0.0044  Score=54.01  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=48.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~  143 (368)
                      ..++..|.+.++++|++|+++++|+++..+++ ++|.+|.+.   ++  .+.|+.||+|++..
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~-g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  209 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGY  209 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeeccc-ccceeeEeecccceEEEEeccceEEecccc
Confidence            35889999999999999999999999988665 889888764   33  57899999999874

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.36  E-value=0.0038  Score=53.26  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=32.0

Q ss_pred             CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          286 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       286 ~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      ++.+|||+|||++.+    .++.+|+.||+.||+.|++.+.
T Consensus       334 t~~pglf~aGd~~~g----~~~~~A~~~G~~aA~~i~~~L~  370 (373)
T d1seza1         334 KNLPGLFYAGNHRGG----LSVGKALSSGCNAADLVISYLE  370 (373)
T ss_dssp             HHSTTEEECCSSSSC----SSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEecCCCc----hhHHHHHHHHHHHHHHHHHHHh
Confidence            457999999999852    3688999999999999999986

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.74  E-value=0.055  Score=39.70  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=42.4

Q ss_pred             CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCC--CceEEEEEEC----Ce--EEecCEEEEeeC
Q 017658           83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVCG----KE--TYSAGAVVLAVG  141 (368)
Q Consensus        83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~g~v~~v~~~----g~--~~~ad~VV~a~p  141 (368)
                      ++.+.+.+.+.+.+++.|++|++|+.|+++...++  .+++ .+...    ++  ..++|.|++|++
T Consensus        57 ~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          57 GFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRL-KVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEE-EEEEECTTSCEEEEEEESEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEE-EEEEEECCCCcEEEEECCEEEEEeC
Confidence            44567899999999999999999999999976432  1333 23332    23  357899998874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.28  E-value=0.026  Score=49.82  Aligned_cols=58  Identities=17%  Similarity=0.072  Sum_probs=39.5

Q ss_pred             HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C--C-----eEEecCEEEEeeChhhHHHhhh
Q 017658           91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G--K-----ETYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~--g-----~~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      .|....+..+.+|+++++|++|..+++ + .++|.+   +  +     .+++||.||+++++-...+||-
T Consensus       228 ~L~~a~~~g~~~i~t~~~V~~I~~~~~-~-~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL  295 (370)
T d3coxa1         228 YLAQAAATGKLTITTLHRVTKVAPATG-S-GYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLV  295 (370)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSS-S-SEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEecCcEEEEEEcCC-C-eEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHHH
Confidence            344434443479999999999999874 3 233332   2  2     2588999999999866666653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.97  E-value=0.0034  Score=54.88  Aligned_cols=108  Identities=8%  Similarity=-0.058  Sum_probs=72.0

Q ss_pred             cCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcC--CCcceeeecCCcchhhhHHHHHH
Q 017658           18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEPWMDS   95 (368)
Q Consensus        18 d~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~GG~~~~L~~~l~~~   95 (368)
                      +..++.+|+.+ .+++.+++.++.|++...|+.+++++++..+...-........  ...-..+|++|+ ..+++.|   
T Consensus       130 ~~~n~ee~~~~-~~G~~lye~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~~~d~~yf~d~~q~~Pk~Gy-t~~~e~m---  204 (314)
T d2bi7a1         130 DPQTFEEEALR-FIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGY-TQMIKSI---  204 (314)
T ss_dssp             SCCBHHHHHHH-HHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHH-HHHHHHH---
T ss_pred             CchhhhHHHHH-hchhhhHHhhcCcchhhhhccCCcccchhhhhccceeccccccccchhhheeecccH-HHHHHHH---
Confidence            45688999986 6789999999999999999999999998765332110000000  011114788885 4576655   


Q ss_pred             HHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHH
Q 017658           96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ  146 (368)
Q Consensus        96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~  146 (368)
                      |...+.+|.+++.+.    .            ++...+|+||.|.|++.+.
T Consensus       205 L~~~~i~v~ln~~~~----~------------~~~~~~d~vI~TgpiD~~f  239 (314)
T d2bi7a1         205 LNHENIKVDLQREFI----V------------EERTHYDHVFYSGPLDAFY  239 (314)
T ss_dssp             HCSTTEEEEESCCCC----G------------GGGGGSSEEEECSCHHHHT
T ss_pred             HhCCCCeeecccccc----c------------cccccceeEEEeccHHHHh
Confidence            344567777776542    1            2244789999999998665

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=93.86  E-value=0.068  Score=46.19  Aligned_cols=55  Identities=15%  Similarity=0.181  Sum_probs=45.5

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeCh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI  142 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~  142 (368)
                      ..+..+|.+.+++.|++|+.+++|+++..++  +++.++..    +|+  .+.|+.||+|+.-
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~--~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG  218 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccccc--ccccceeEEeccCCcEEEEecCeEEEeccc
Confidence            4588899999999999999999999999887  77776654    254  5799999998765

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.64  E-value=0.056  Score=46.37  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=45.4

Q ss_pred             hhhhHHHHHHHHHcCC--EEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           86 EKIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      +.+.+-|.+.+++.+.  .|+++|+|+++..+++++ .|.|.+. ++++++|.||+|++.
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~-~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATN-TWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT-EEEEEETTCCEEEEEEEEECCCS
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCC-ceeeccccccccccceEEEeecc
Confidence            3477778888888886  699999999999876534 5778876 678999999999986

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.07  Score=45.92  Aligned_cols=54  Identities=20%  Similarity=0.311  Sum_probs=40.1

Q ss_pred             hhHHHHHH-HHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChh
Q 017658           88 IFEPWMDS-MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        88 L~~~l~~~-l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~  143 (368)
                      +...+.+. .+..+++|+.+++|++|..++  |+|.++.. +   |+  .+.|+.||+|++-.
T Consensus       136 ~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~--g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~  196 (311)
T d1kf6a2         136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (311)
T ss_dssp             HHHHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHhHHHHHHccCcceeEeeeEeeeeEecC--CcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence            44444444 444579999999999999887  88888754 2   54  46899999999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.34  E-value=0.11  Score=45.45  Aligned_cols=56  Identities=14%  Similarity=0.068  Sum_probs=39.5

Q ss_pred             HHHHcC-CEEeccceeeeEEecCCCceEEEEEE-C--C-----eEEecCEEEEeeChhhHHHhhh
Q 017658           95 SMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-G--K-----ETYSAGAVVLAVGISTLQELIK  150 (368)
Q Consensus        95 ~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~-~--g-----~~~~ad~VV~a~p~~~l~~ll~  150 (368)
                      .+++.| .+|+++|.|++|..+++.+..++|.. +  +     .+++|+.||+++++-...+||-
T Consensus       227 ~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl  291 (367)
T d1n4wa1         227 AALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLV  291 (367)
T ss_dssp             HHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHHH
Confidence            344555 89999999999998875223333433 1  2     2578999999999877777653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.028  Score=45.69  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017658           95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI  142 (368)
Q Consensus        95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~  142 (368)
                      .++++|++++++++|++|..++  .+   |+++ |+++.+|.||+|++.
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~--~~---V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRD--NM---VKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGG--TE---EEETTSCEEEEEEEEECCCE
T ss_pred             HHHHCCeEEEeCCEEEEeeccC--ce---eeeccceeeccceEEEeeee
Confidence            4567899999999999997665  43   4555 789999999999884

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.22  E-value=0.11  Score=44.99  Aligned_cols=55  Identities=15%  Similarity=-0.141  Sum_probs=41.3

Q ss_pred             hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce---EEecCEEEEeeChhh
Q 017658           87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE---TYSAGAVVLAVGIST  144 (368)
Q Consensus        87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~---~~~ad~VV~a~p~~~  144 (368)
                      .+.+.|....+..+..|++||+|++|..++  +++ .|++.    ++   +..||+||+|++...
T Consensus       114 ~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~--~~w-~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         114 TIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSW-VVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEE-EEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHHHhhhcccCceEEEEEEecC--CEE-EEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            466677777777788999999999999887  653 34432    22   457999999998754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=91.74  E-value=0.06  Score=45.99  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             CCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017658          287 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY  324 (368)
Q Consensus       287 ~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~  324 (368)
                      +.+++|||||++...+  +++++|+.||+.||..|-..
T Consensus       332 ~~g~v~~aGd~~~~~~--~~~~~a~~sG~~aA~~i~~a  367 (370)
T d2iida1         332 SQGRIYFAGEYTAQAH--GWIDSTIKSGLRAARDVNLA  367 (370)
T ss_dssp             CBTTEEECSGGGSSSS--SCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEecccccCCC--cccHHHHHHHHHHHHHHHhh
Confidence            4578999999996433  58999999999999998653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.19  E-value=0.086  Score=43.10  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=40.5

Q ss_pred             HHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 017658           97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI  149 (368)
Q Consensus        97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll  149 (368)
                      +..+++++++++|+.|...+  +.++ |.+. |+.+++|+|++++|...+.+.+
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~d~~~~~~~~~~l~~~~  271 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSP--GGVT-VKTEDNSVYSADYVMVSASLGVLQSDL  271 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECS--SCEE-EEETTSCEEEESEEEECSCHHHHHTTS
T ss_pred             hhcccccccccccccccccC--ccEE-EEECCCCEEEcCEEEeecCHHHHhhcc
Confidence            34568999999999999887  5565 5554 7899999999999999887543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.32  E-value=0.14  Score=44.57  Aligned_cols=54  Identities=13%  Similarity=0.144  Sum_probs=42.0

Q ss_pred             HcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhHHHhhhh
Q 017658           98 TRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQELIKN  151 (368)
Q Consensus        98 ~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l~~ll~~  151 (368)
                      +.|.+|++++.|++|..+++.+++++|.+.    |+  +++|+.||++..+-...+|+-.
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~  289 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVN  289 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhh
Confidence            457899999999999997543578888752    44  5789999999999877776543

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=90.03  E-value=0.22  Score=43.49  Aligned_cols=55  Identities=15%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             HHHcCCEEeccceeeeEEecCCCceEEEEEEC------Ce--EEecCE-EEEeeChhhHHHhhhhc
Q 017658           96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------KE--TYSAGA-VVLAVGISTLQELIKNS  152 (368)
Q Consensus        96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~------g~--~~~ad~-VV~a~p~~~l~~ll~~~  152 (368)
                      +.+.+.+|++++.|++|..++  +++++|.+.      ++  ++.++. ||+++++=...+||-..
T Consensus       201 ~~r~nl~i~t~~~V~rI~~d~--~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~S  264 (360)
T d1kdga1         201 LARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQS  264 (360)
T ss_dssp             HTCTTEEEECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             hcccccccccCcEEEEEEEeC--CEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhc
Confidence            333357999999999999987  889999884      22  345544 99998887777776443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.37  Score=36.52  Aligned_cols=49  Identities=18%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCe--EEecCEEEEeeC
Q 017658           88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE--TYSAGAVVLAVG  141 (368)
Q Consensus        88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~--~~~ad~VV~a~p  141 (368)
                      ....+...++.+|++++.++.|.+|.  ++ | +. +..+|+  .+.||.||+|++
T Consensus       110 ~~~~~~~~~~~~gv~~~~~~~v~~i~--~~-g-v~-~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         110 TGWIHRTTLLSRGVKMIPGVSYQKID--DD-G-LH-VVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             THHHHHHHHHHTTCEEECSCEEEEEE--TT-E-EE-EEETTEEEEECCSEEEECCC
T ss_pred             hhHHHHHHHhhCCeEEEeeeEEEEEc--CC-C-CE-EecCCeEEEEECCEEEECCC
Confidence            34456667889999999999999985  32 4 33 445554  589999999986

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.39  E-value=0.31  Score=38.39  Aligned_cols=49  Identities=16%  Similarity=0.199  Sum_probs=36.8

Q ss_pred             HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C-Ce--EEecCEEEEeeChh
Q 017658           92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~-g~--~~~ad~VV~a~p~~  143 (368)
                      ..+.++++|.++++++.|++|..++  ..|+ +.. . |+  ++.+|.+|++++..
T Consensus        62 ~~~~l~~~gi~v~~~~~V~~i~~~~--~~v~-~~~~~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          62 TGEKMESRGVNVFSNTEITAIQPKE--HQVT-VKDLVSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             CHHHHHHTTCEEEETEEEEEEETTT--TEEE-EEETTTCCEEEEECSEEEECCCEE
T ss_pred             hHHHHHHCCcEEEEeeceeeEeecc--ccce-eeecccccccccccceeeEeecce
Confidence            3456788899999999999998766  5454 332 2 43  57899999999864

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=88.61  E-value=0.66  Score=37.62  Aligned_cols=48  Identities=17%  Similarity=0.104  Sum_probs=36.9

Q ss_pred             HHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017658           93 MDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS  143 (368)
Q Consensus        93 ~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~  143 (368)
                      .+.+.+. +.+|+.+ .|.+|..++  ++|.+|++. |+++.|+.||+|++.-
T Consensus        74 k~~l~~~~nL~i~q~-~V~dli~e~--~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          74 KYLLEGLRPLHLFQA-TATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             HHHHHTCTTEEEEEC-CEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHhhhcCHHHHhc-cceeeEecc--cceeeEEeccccEEEEeEEEEccCcc
Confidence            3344443 6677655 678888887  778999987 7799999999999975

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=87.26  E-value=0.31  Score=42.99  Aligned_cols=57  Identities=18%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             HHHcCCEEeccceeeeEEecCCC--ceEEEEEE---CCe--EEecCE-EEEeeChhhHHHhhhhc
Q 017658           96 MRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKE--TYSAGA-VVLAVGISTLQELIKNS  152 (368)
Q Consensus        96 l~~~G~~i~~~t~V~~I~~~~~~--g~v~~v~~---~g~--~~~ad~-VV~a~p~~~l~~ll~~~  152 (368)
                      +++.+.+|++++.|++|..+++.  .++++|..   +|+  ++.|++ ||+++++-...+||-..
T Consensus       235 ~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~S  299 (385)
T d1cf3a1         235 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYS  299 (385)
T ss_dssp             TTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             hcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhc
Confidence            34557899999999999987631  17888875   254  568876 99998887777766543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.67  E-value=0.42  Score=36.22  Aligned_cols=45  Identities=24%  Similarity=0.234  Sum_probs=35.4

Q ss_pred             HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      +.+++.|.++++++.|++|....   ++  +..+++++.+|.+|+|++..
T Consensus        60 ~~~~~~~v~~~~~~~v~~i~~~~---~~--~~~~~~~i~~D~li~a~G~~  104 (167)
T d1xhca1          60 DWYRKRGIEIRLAEEAKLIDRGR---KV--VITEKGEVPYDTLVLATGAP  104 (167)
T ss_dssp             HHHHHHTEEEECSCCEEEEETTT---TE--EEESSCEEECSEEEECCCEE
T ss_pred             HHHHhccceeeeecccccccccc---cc--ccccccccccceeEEEEEec
Confidence            44667899999999999996433   33  45677889999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.26  E-value=1.3  Score=32.01  Aligned_cols=52  Identities=10%  Similarity=0.166  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeC
Q 017658           88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVG  141 (368)
Q Consensus        88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p  141 (368)
                      -.+.+.+.+.++ ..+|++++.|++|.-++  +++++|++.    |+  ++.+|.|..+++
T Consensus        67 ~~~~~~~~~~~~~~I~v~~~~~v~~i~G~~--~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          67 ADQVLQDKLRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             SCHHHHHHHHTCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccccccccccccceeEEcCcceEEEEccc--cceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            445566667765 48999999999998665  457777763    43  689999988765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=83.90  E-value=0.47  Score=41.86  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=40.7

Q ss_pred             HHHcCCEEeccceeeeEEecCC--CceEEEEEEC---Ce--EEecCE-EEEeeChhhHHHhhhhc
Q 017658           96 MRTRGCEFLDGRRVTDFIYDEE--RCCISDVVCG---KE--TYSAGA-VVLAVGISTLQELIKNS  152 (368)
Q Consensus        96 l~~~G~~i~~~t~V~~I~~~~~--~g~v~~v~~~---g~--~~~ad~-VV~a~p~~~l~~ll~~~  152 (368)
                      +.+.+.+|++++.|++|.++++  +.++++|.+.   +.  ++.|++ ||+++++=...+||--.
T Consensus       241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~S  305 (391)
T d1gpea1         241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYS  305 (391)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             ccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhc
Confidence            3446799999999999987632  1268888752   43  578887 98888886676665443

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=83.30  E-value=1.3  Score=37.77  Aligned_cols=57  Identities=14%  Similarity=0.187  Sum_probs=44.4

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEE-EC---Ce--EEecCEEEEeeChh
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CG---KE--TYSAGAVVLAVGIS  143 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~-~~---g~--~~~ad~VV~a~p~~  143 (368)
                      ..+..+|.+..++.+++++.++.+.++..+++ +++.++. .+   |+  .+.|+.||+|++-.
T Consensus       143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~-~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~  205 (330)
T d1neka2         143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGA  205 (330)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEESCEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEEEEeeeecc-ccceeeeeEEccCCcEEEEeccEEEEcCCCc
Confidence            56889999999999999999999999988654 5555433 22   44  47899999998764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=2.6  Score=30.22  Aligned_cols=54  Identities=15%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----C---eEEecCEEEEeeC
Q 017658           86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K---ETYSAGAVVLAVG  141 (368)
Q Consensus        86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g---~~~~ad~VV~a~p  141 (368)
                      +.+.+.+.+.....+..+++++.|++|.-++  .++++|++.    +   +++.+|.|+.+++
T Consensus        66 ~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~--~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          66 KILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             hHHHHHHHHhhcccceeEecceEEEEEECCC--CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            4456666666666678999999999998654  557877763    2   3588999988753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=80.82  E-value=0.71  Score=35.53  Aligned_cols=43  Identities=26%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             HHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017658           97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS  143 (368)
Q Consensus        97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~  143 (368)
                      ...+++++++++|++|..+.  ..+  ...+|+++.+|.||+|++..
T Consensus        66 ~~~~i~~~~~~~v~~i~~~~--~~~--~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          66 RAPEVEWLLGVTAQSFDPQA--HTV--ALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             GSTTCEEEETCCEEEEETTT--TEE--EETTSCEEECSEEEECCCEE
T ss_pred             hcCCeEEEEecccccccccc--cee--EecCCcEeeeeeEEEEEEEE
Confidence            34589999999999998665  432  23347899999999999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.22  E-value=0.67  Score=39.23  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=30.2

Q ss_pred             CCCCCceEEeccccc---c--CCCCccchHHhHHHHHHHHHHHHHhC
Q 017658          285 FTSFPNLFMAGDWIT---T--RHGSWSQERSYVTGLEAANRVVDYLG  326 (368)
Q Consensus       285 ~~~~~~L~laGd~~~---~--~~~~~~~egA~~Sg~~aA~~Il~~~~  326 (368)
                      .+..+|+|++||...   .  ..+ .+.-+++.||+.||+.|++.|.
T Consensus       265 ~~~~pgl~~~Gdaa~~v~g~~r~G-~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         265 YAGVDNMYFAGMEVAELDGLNRMG-PTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             CTTSTTEEECTHHHHHHHTCCBCC-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEccCCEEEEeeecCcccCcCCcc-HHHHHHHHHHHHHHHHHHHHhc
Confidence            356799999999653   1  122 3566678999999999998763