BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017660
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC
7942) GN=pds PE=1 SV=1
Length = 474
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 143/314 (45%), Gaps = 15/314 (4%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D + E ++ ER+ V + + F ++ SA L L L +K +
Sbjct: 147 DQYSWTEWLRKQNIPERVNDEVFIAMAKALNFIDPDEISATVVLTALNRF-LQEKKGSMM 205
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYS 132
+ G E++ +P ++ ++ RG + L + +F+ +++ + + G ++
Sbjct: 206 AFLDGAPPERLCQPIVEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIE 265
Query: 133 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS 192
A A V A+ + L+ L+ ++ F ++ L + V+++ LWFD+K+T ++ +
Sbjct: 266 ADAYVSALPVDPLKLLLPDAWKA-MPYFQQLDGLQGVPVINIHLWFDRKLT--DIDHLLF 322
Query: 193 GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI-K 251
L+ + D++ E++D ++++ F A + + D+ ++A ++ + K +
Sbjct: 323 SRSPLLS-VYADMSNTCREYEDPDRSMLELVFAPAKDWIGRSDEDILAATMAEIEKLFPQ 381
Query: 252 DFS---TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQE 308
FS A + +KI + P S+ PG +Y + N F+ GD+ R+ + S E
Sbjct: 382 HFSGENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLA-SME 440
Query: 309 RSYVTGLEAANRVV 322
+ ++G A ++
Sbjct: 441 GAVLSGKLTAQAII 454
>sp|P29273|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=pds PE=3 SV=2
Length = 472
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/315 (18%), Positives = 136/315 (43%), Gaps = 15/315 (4%)
Query: 16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 75
+ D T E + R+ + V + + F ++ SA L L L +
Sbjct: 145 EMDKYTWSEWMAKQNIPPRIEKEVFIAMSKALNFIDPDEISATILLTALNRF-LQEKNGS 203
Query: 76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KET 130
+ + G E++ +P +D + RG E + + + + +E+ ++ G E
Sbjct: 204 KMAFLDGAPPERLCQPLVDYITERGGEVHINKPLKEILLNEDGSVKGYLIRGLDGAPDEV 263
Query: 131 YSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 190
+A V A+ + L+ ++ + EF ++ L + V+++ LWFD+K+T ++ +
Sbjct: 264 ITADLYVSAMPVDPLKTMVP-APWREYPEFKQIQGLEGVPVINLHLWFDRKLT--DIDHL 320
Query: 191 CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCI 250
L+ + D++ E+ D ++++ A + + D+++VA ++ + +
Sbjct: 321 LFSRSPLLS-VYADMSNTCREYSDPDKSMLELVLAPAQDWIGKSDEEIVAATMAEIKQLF 379
Query: 251 KDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWS 306
+ A ++ + + P+S+ PG TS PN ++AGD+ ++ S
Sbjct: 380 PQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLG-S 438
Query: 307 QERSYVTGLEAANRV 321
E + ++G + A +
Sbjct: 439 MEGAVLSGKQCAQAI 453
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/313 (18%), Positives = 131/313 (41%), Gaps = 11/313 (3%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D I+ ++ ++ G +R+ V + + F ++ S L I L + +
Sbjct: 258 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 316
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P ++ + ++G + R+ +E+ ++ T A V
Sbjct: 317 AFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFILNDGSTIEGDAFV 376
Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
A + + L+ F K+ L + V++V +WFD+K+ N S+
Sbjct: 377 FATPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTSDNLLFSRSP 433
Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
L + D++ E+ D + ++++ F A E + D +++ + L+K D
Sbjct: 434 LLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISAD 493
Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
S A ++ + + + P+S+ PG + + ++AGD+ ++ + S E + +
Sbjct: 494 QSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLA-SMEGAVL 552
Query: 313 TGLEAANRVV-DY 324
+G A +V DY
Sbjct: 553 SGKLCAQAIVQDY 565
>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays
GN=PDS1 PE=2 SV=1
Length = 571
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 128/313 (40%), Gaps = 11/313 (3%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D +T E K+ G +R+ V + + F ++ S L I L + +
Sbjct: 244 DGLTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 302
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P +D +R+RG E R+ + + + + A V
Sbjct: 303 AFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKIELNPDGTVKHFALSDGTQITGDAYV 362
Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
A + + L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 363 CATPVDIFKLLVPQE-WSEITYFKKLEKLVGVPVINVHIWFDRKLN--NTYDHLLFSRSS 419
Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
L + D++ E+ D + ++++ F A+E + D +++ + L+K D
Sbjct: 420 LLSVYADMSVTCKEYYDPNRSMLELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAAD 479
Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
S A ++ + I + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 480 QSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 538
Query: 313 TGLEAANRVV-DY 324
+G A +V DY
Sbjct: 539 SGKLCAQSIVQDY 551
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 130/313 (41%), Gaps = 11/313 (3%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D ++ +E ++ G ER+ V + + F ++ S L I L + +
Sbjct: 240 DGLSVKEWMEKQGVPERVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 298
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P +D +R+ G E R+ +++ S ++ T A V
Sbjct: 299 AFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYV 358
Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
A + L+ L+ + F K+ L + V++V +WFD+K+ N + +
Sbjct: 359 FAAPVDILKLLLPDP-WKEIPYFKKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSN 415
Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
L + D++ E+ D + ++++ F A E + D ++ + L K D
Sbjct: 416 LLSVYADMSLTCKEYYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISAD 475
Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 476 QSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 534
Query: 313 TGLEAANRVV-DY 324
+G + +V DY
Sbjct: 535 SGKFCSQSIVQDY 547
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/310 (18%), Positives = 130/310 (41%), Gaps = 10/310 (3%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D ++ +E K+ G ER+ V + + F ++ S L I L + +
Sbjct: 246 DGLSVQEWMKKQGVPERVADEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 304
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P +D +++ G E R+ +++ S ++ + A V
Sbjct: 305 AFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYV 364
Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
A + L+ L+ ++ F ++ L + V++V +WFD+K+ N +
Sbjct: 365 FATPVDILKLLLPDN-WKGIPYFQRLDKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSP 421
Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
L + D++ E+ + ++++ F A E + DD ++ ++ L+K D
Sbjct: 422 LLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISAD 481
Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 482 QSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 540
Query: 313 TGLEAANRVV 322
+G A +V
Sbjct: 541 SGKLCAQAIV 550
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 125/311 (40%), Gaps = 10/311 (3%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D T E K+ G +R+ V + + F ++ S L I L + +
Sbjct: 252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 310
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P +D +R+ G E R+ + + + + A V
Sbjct: 311 AFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYV 370
Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
A + L+ L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 371 FATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 427
Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
L + D++ E+ D + ++++ F A E + D +++ + L+K D
Sbjct: 428 LLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAAD 487
Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 488 QSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 546
Query: 313 TGLEAANRVVD 323
+G A VV+
Sbjct: 547 SGKLCAQSVVE 557
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 125/311 (40%), Gaps = 10/311 (3%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D T E K+ G +R+ V + + F ++ S L I L + +
Sbjct: 252 DGFTVSEWMKKQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 310
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P +D +R+ G E R+ + + + + A V
Sbjct: 311 AFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYV 370
Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
A + L+ L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 371 FATPVDILKLLVPQE-WKEISYFKKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 427
Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
L + D++ E+ D + ++++ F A E + D +++ + L+K D
Sbjct: 428 LLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAAD 487
Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
S A ++ + + + P+S+ P + ++AGD+ ++ + S E + +
Sbjct: 488 QSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 546
Query: 313 TGLEAANRVVD 323
+G A VV+
Sbjct: 547 SGKLCAQSVVE 557
>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=crtQ PE=3 SV=2
Length = 479
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 134/342 (39%), Gaps = 25/342 (7%)
Query: 3 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 62
++DF+ R D I+ + F+ G S + + P+ F E SA L
Sbjct: 138 GLVDFEGAMKTIRNLDKISFADWFRSHGGSNGSIKRMWNPIAYALGFIDCENISARCMLT 197
Query: 63 ILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCC 120
I F + + + L G+ E + +P + + RG + R+V + Y E +
Sbjct: 198 IFQFFAVRSEASV-LRMLEGSPDEYLHQPILRYLEARGTKVYTRRQVREIKYAEAEGQTR 256
Query: 121 ISDVVCGK----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKL 176
++ +V K E +A A V A I +Q ++ EF + L ++ V +V++
Sbjct: 257 VTGIVVAKGDEVEEITADAYVCACDIPGIQRVLPQE-WRKWSEFDNIYKLDAVPVATVQM 315
Query: 177 WFDKKVTVPNVSNA------CSGFGDSLAWT-------FFDL--NKIYDEHKDDSATVIQ 221
FD VT N +G D+L +T F DL D ++ +++Q
Sbjct: 316 RFDGWVTELQDENKRKQLKEAAGL-DNLLYTADADFSCFADLALTSPSDYYRQGQGSLLQ 374
Query: 222 ADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM 281
+ + ++ + + + + + + + + +SL PG Y
Sbjct: 375 LVLTPGDPFIKESNEAIAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYR 434
Query: 282 MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323
T N F+AG + T + S E + V+G AA ++D
Sbjct: 435 PNQKTPIANFFLAGSY-TQQDYIDSMEGATVSGRRAAKVILD 475
>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=crtQ PE=3 SV=1
Length = 489
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 24/341 (7%)
Query: 3 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 62
++DFD R D I+ E F G +E + + P+ F E SA L
Sbjct: 138 GLVDFDGAMKTIRDLDRISFAEWFLSKGGNEGSLKKMWDPIAYALGFIDTENISARCMLT 197
Query: 63 ILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDF---IYDEER- 118
I + + A + L G+ +E + +P + + RG +F +V + + D E
Sbjct: 198 I-FQLFAARTEASVLRMLEGSPQEYLHKPIQEYLEQRGTKFYTRHKVKEIKTKVTDGETR 256
Query: 119 ---CCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVK 175
I+D V K T +A A V A + ++ L+ + + F K+ L ++ V +V+
Sbjct: 257 VTGLIINDGVETK-TVTADAYVAACDVPGIKNLLPENWRTQWDFFNKIYYLDTVPVATVQ 315
Query: 176 LWFDKKVTVPN----VSNACSGFG-DSLAWT-------FFDL--NKIYDEHKDDSATVIQ 221
L FD VT N FG D+L +T F DL D ++ +++Q
Sbjct: 316 LRFDGWVTEMNDPAKRKQLEQAFGLDNLLYTSDAEFSCFADLALTSPADYYRPGEGSLLQ 375
Query: 222 ADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM 281
+ M ++ + + + + + + + + + +SL PG +
Sbjct: 376 LVLTPGDPFMKESNEAIAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFR 435
Query: 282 MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 322
T N F+AG + T + S E + ++G +AA ++
Sbjct: 436 PSQATPIANFFLAGSY-TQQDYIDSMEGATLSGRQAAQAIL 475
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 130/315 (41%), Gaps = 15/315 (4%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D +T E ++ G +R+ V + + F ++ S L I L + +
Sbjct: 245 DGLTVTEWMRRQGVPDRVNDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 303
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P +D +++ G R+ + + V+ + A V
Sbjct: 304 AFLDGNPPERLCMPIVDHIQSLGGRAQLNSRLQKIELNPDGTVKHFVLGNGNIITGDAYV 363
Query: 138 LAVGISTLQELIKNSILCNRE--EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 195
+A + L+ L+ RE F K+ L + V++V +WFD+K+ N +
Sbjct: 364 VAAPVDILKLLLPQEW---REIPYFQKLDKLVGVPVINVHIWFDRKLK--NTYDHLLFTR 418
Query: 196 DSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK---- 251
L + D++ E+ D + ++++ F A E + D +++ + + L+K
Sbjct: 419 SPLLSVYADMSVTCKEYYDPNRSMLELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIA 478
Query: 252 -DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERS 310
D S A ++ + + + P+S+ P + ++AGD+ ++ + S E +
Sbjct: 479 ADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQKYLA-SMEGA 537
Query: 311 YVTGLEAANRVV-DY 324
++G A +V DY
Sbjct: 538 VLSGKLCAQSIVQDY 552
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/313 (18%), Positives = 129/313 (41%), Gaps = 11/313 (3%)
Query: 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 77
D I+ ++ ++ G +R+ V + + F ++ S L I L + +
Sbjct: 259 DGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPDELSMQCIL-IALNRFLQEKHGSKM 317
Query: 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVV 137
+ G E++ P ++ + ++G + R+ +E+ S ++ A V
Sbjct: 318 AFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKSFILSDGSAIEGDAFV 377
Query: 138 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197
A + + L+ F K+ L + V++V +WFD+K+ N + S
Sbjct: 378 FAAPVDIFKLLLPED-WKEIPYFQKLEKLVGVPVINVHIWFDRKLK--NTYDHLLFSRSS 434
Query: 198 LAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIK-----D 252
L + D++ E+ + + ++++ F A E + D +++ + L+ D
Sbjct: 435 LLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDSEIIDATMKELATLFPDEISAD 494
Query: 253 FSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYV 312
S A ++ + + + P+S+ PG + ++AGD+ ++ + S E + +
Sbjct: 495 QSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYLA-SMEGAVL 553
Query: 313 TGLEAANRVV-DY 324
+G A +V DY
Sbjct: 554 SGKLCAQAIVQDY 566
>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus
(strain PCC 7942) GN=zds PE=3 SV=1
Length = 481
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/344 (20%), Positives = 135/344 (39%), Gaps = 29/344 (8%)
Query: 3 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLG 62
++D++ R D I+ + F+ G SE + + P+ F E SA L
Sbjct: 138 GILDYEGAMKIIRALDRISFADWFRSHGGSEGSLKRMWNPIAYALGFIDTENISARCMLT 197
Query: 63 ILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS 122
+ + + A + L G+ E + +P +D ++ RG RRV + Y E
Sbjct: 198 V-FQMFAAKTEASKLNLLAGSPAEYLHKPILDYIQARGATLHLRRRVREIEYTETNG--Q 254
Query: 123 DVVCGKETYSAGAV--------VLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV 174
VV G + AV + A + +Q L+ + EF + L ++ V +V
Sbjct: 255 TVVTGLQIADGDAVERVEADVYLAACDVPGIQRLLPEA-WRKWSEFDNIYKLDAVPVATV 313
Query: 175 KLWFDKKVT------VPNVSNACSGFGDSLAWT-------FFD--LNKIYDEHKDDSATV 219
+L FD VT + + +G D+L +T F D L+ D ++ ++
Sbjct: 314 QLRFDGWVTELGDREKRHQLDHATGL-DNLLYTADADFSCFTDLALSSPKDYYRKGQGSL 372
Query: 220 IQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYK 279
+Q + + +K++ + + + + + + + +SL PG
Sbjct: 373 LQCVLTPGDPFIAMKNEDIAQHVLKQVHELFPSSRDLNMTWSNVVKLAQSLYREAPGMDP 432
Query: 280 YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323
+ T N F+AG + + S E + ++G AA +++
Sbjct: 433 FRPDQKTPIANFFLAGSYTQQDYID-SMEGATISGRRAAKAMLE 475
>sp|O18141|NHR79_CAEEL Nuclear hormone receptor family member nhr-79 OS=Caenorhabditis
elegans GN=nhr-79 PE=2 SV=2
Length = 463
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326
G FP++F D I +R S S+ +YVTG+E R+ G
Sbjct: 159 GVDDFPDIFTDSDEIRSRMTSISEASAYVTGMEEEERLFGLAG 201
>sp|Q31IB6|GLGB_THICR 1,4-alpha-glucan branching enzyme GlgB OS=Thiomicrospira crunogena
(strain XCL-2) GN=glgB PE=3 SV=1
Length = 726
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 159 EFLKVLNL-ASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDSLAWT---------FFDLN 206
EFLK LN + ++ + P VS G G S+ W FF +
Sbjct: 439 EFLKTLNAEVHAQCPGALMMAEESTSWPMVSRPTWMGGLGFSMKWNMGWMNDTLDFFQQD 498
Query: 207 KIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD 252
IY + + T Q Y N ++PL D+VV + +SK D
Sbjct: 499 PIYRPYHHNQLTFSQMYAYSENFILPLSHDEVVHMKHALVSKMPGD 544
>sp|Q9ZCN2|Y691_RICPR Uncharacterized protein RP691 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP691 PE=4 SV=1
Length = 656
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 161 LKVLNLAS-IDVVSVKLWFDKKVTVPNVSNACSGFGDSLA----WTFFDLNKIYDEHKDD 215
LK+L+LA+ IDV++ ++ NV NA S G ++A T LNKI DD
Sbjct: 578 LKLLSLATLIDVLTTA------ISDLNVGNAISSAGKNIAEKTATTLTWLNKIASGTNDD 631
Query: 216 SATVIQADFYHANELMPL 233
+ I D H EL PL
Sbjct: 632 TNDDIVIDIAHTEELQPL 649
>sp|O67115|SYW_AQUAE Tryptophan--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=trpS
PE=3 SV=1
Length = 395
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 315 LEAANRVVDYLGDGSFSKIIPVEEDE-PHIEALRTVNRRFNEIRAQL 360
L+AA+ ++ Y G+G +PV ED+ PHIE R + RRFN + ++
Sbjct: 200 LQAAD-ILIYKGEG-----VPVGEDQLPHIELSREIARRFNRLYGKI 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,973,281
Number of Sequences: 539616
Number of extensions: 5580002
Number of successful extensions: 15428
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 15421
Number of HSP's gapped (non-prelim): 19
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)