BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017664
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 106 DYVVVATGHVESVPK-SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI-AVDFP 163
D++++ATG +P E + F + VL VGGG VE AG A P
Sbjct: 157 DHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPP 216
Query: 164 DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETSSG 220
KV L +R +L + LT+ +E++ N++ V+LNT + SG
Sbjct: 217 GGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG 276
Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
+T+D D M G+ ++ L+ + L +G + VDE R N++AIGDITD
Sbjct: 277 KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGDITD 333
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 106 DYVVVATGHVESVPK-SRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI-AVDFP 163
D++++ATG +P E + F + VL VGGG VE AG A P
Sbjct: 154 DHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPP 213
Query: 164 DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETSSG 220
KV L +R +L + LT+ +E++ N++ V+LNT + SG
Sbjct: 214 GGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG 273
Query: 221 ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITD 278
+T+D D M G+ ++ L+ + L +G + VDE R N++AIGDITD
Sbjct: 274 KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGDITD 330
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
+++++A+G H+ ++P E + F + VL VGGG VE AG
Sbjct: 153 EHILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 210
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
P D +V L +RG +L + LT+ ++++ ++ V LN +
Sbjct: 211 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 270
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
SG+ +D D M G++ + L+ L+++ + G + VDE R N++AIGD+
Sbjct: 271 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 326
Query: 277 TD 278
T+
Sbjct: 327 TN 328
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
+++++A+G H+ ++P E + F + VL VGGG VE AG
Sbjct: 154 EHILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 211
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
P D +V L +RG +L + LT+ ++++ ++ V LN +
Sbjct: 212 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 271
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
SG+ +D D M G++ + L+ L+++ + G + VDE R N++AIGD+
Sbjct: 272 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 327
Query: 277 TD 278
T+
Sbjct: 328 TN 329
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
+++++A+G H+ ++P E + F + VL VGGG VE AG
Sbjct: 155 EHILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 212
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
P D +V L +RG +L + LT+ ++++ ++ V LN +
Sbjct: 213 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 272
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
SG+ +D D M G++ + L+ L+++ + G + VDE R N++AIGD+
Sbjct: 273 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 328
Query: 277 TD 278
T+
Sbjct: 329 TN 330
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 15/182 (8%)
Query: 106 DYVVVATG---HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDF 162
+ +++A+G H+ ++P E + F + VL VGGG VE AG
Sbjct: 154 ENILLASGSWPHMPNIPG--IEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYK 211
Query: 163 P-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTISDGLIETS 218
P D +V L +RG +L + LT+ ++++ ++ V LN +
Sbjct: 212 PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 271
Query: 219 SGETIDTDCHFMCTGKAMASSWLRETILKDS--LDGRGRLMVDENLRVRGFKNVFAIGDI 276
SG+ +D D M G++ + L+ L+++ + G + VDE R N++AIGD+
Sbjct: 272 SGKKMDFDLVMMAIGRSPRTKDLQ---LQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDV 327
Query: 277 TD 278
T+
Sbjct: 328 TN 329
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 101 QTFVYDYVVVATGH--VESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEI 158
QT+ + ++ATG +E + R+ + S++++GGG G+EL G
Sbjct: 130 QTYTFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIEL-GTA 188
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQ-SVTLNTISDGLIET 217
+F K IL G L F A+ I L K VEV+ N + DG+ T
Sbjct: 189 YANFGTKVTILEGAGEILSGFEKQMAA-IIKKRLKKKGVEVVTNALAKGAEEREDGVTVT 247
Query: 218 --SSGE--TIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAI 273
++GE TID D + G+ + L + + RG + VD+ R N+FAI
Sbjct: 248 YEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTS-VPNIFAI 306
Query: 274 GDITDIPEI 282
GDI P +
Sbjct: 307 GDIVPGPAL 315
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 78 SNVKIVVSTAVSITD-TEVVTAGGQTFVYDYVVVATGH---VESVPKSRTERLSQYEKDF 133
SNV I S AV + + T ++ G+ + +++ATG S K L+ E F
Sbjct: 127 SNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNEI-F 185
Query: 134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLT 193
+ K S++IVGGG GVE A K L+HRG +L Q+ D +
Sbjct: 186 DLEKLPKSIVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMV 243
Query: 194 SKKVEVILNQSVTLNTISDGLIET--SSGETIDTDCHFMCTGKAMASSWLRETILKDSLD 251
+K + +I +V+ ++ ++G+TI D + TG+ ++ L ++
Sbjct: 244 AKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVN 303
Query: 252 GRGRLMVDENLRVRGFKNVFAIGDIT 277
G ++VDE + +++A+GD+T
Sbjct: 304 EFGAVVVDEKMTTN-VSHIWAVGDVT 328
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 8/186 (4%)
Query: 100 GQTFVYDYVVVATGHVESVP---KSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG 156
G+ Y+++ATG +P + ER+ + + +++VGGG G+EL
Sbjct: 125 GEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELG- 183
Query: 157 EIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVT--LNTISDGL 214
+ +VI++ ++L + S+ A + + + VT +
Sbjct: 184 -VVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGAR 242
Query: 215 IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIG 274
+E GE ++ D + G+ + L S D RGR+ VDE+LR R +++AIG
Sbjct: 243 VELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTR-VPHIYAIG 301
Query: 275 DITDIP 280
D+ P
Sbjct: 302 DVVRGP 307
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
F K + VL+VG G +E+ + P L+HR K+ + + + +Q LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
L +++ LN+ + N I+ I SG+ D G S ++ + +K L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
D +G + V++ N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
F K + VL+VG G +E+ + P L+HR K+ + + + +Q LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
L +++ LN+ + N I+ I SG+ D G S ++ + +K L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
D +G + V++ N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
F K + VL+VG G +E+ + P L+HR K+ + + + +Q LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
L +++ LN+ + N I+ I SG+ D G S ++ + +K L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
D +G + V++ N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
F K + VL+VG G +E+ + P L+HR K+ + + + +Q LD
Sbjct: 142 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 197
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
L +++ LN+ + N I+ I SG+ D G S ++ + +K L
Sbjct: 198 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 253
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
D +G + V++ N++AIGDI
Sbjct: 254 DRKGFIPVNDKFET-NVPNIYAIGDI 278
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
F K + VL+VG G +E+ + P L+HR K+ + + + +Q LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
L +++ LN+ + N I+ I SG+ D G S ++ + +K L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
D +G + V++ N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
F K + VL+VG G +E+ + P L+HR K+ + + + +Q LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
L +++ LN+ + N I+ I SG+ D G S ++ + +K L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
D +G + V++ N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVD--FPDKKVILVHRGPKLLEFVGSRASQIALD 190
F K + VL+VG G +E+ + P L+HR K+ + + + +Q LD
Sbjct: 141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHP----TLIHRSDKINKLMDADMNQPILD 196
Query: 191 WLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSL 250
L +++ LN+ + N I+ I SG+ D G S ++ + +K L
Sbjct: 197 ELDKREIPYRLNEEI--NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIK--L 252
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGDI 276
D +G + V++ N++AIGDI
Sbjct: 253 DRKGFIPVNDKFET-NVPNIYAIGDI 277
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 27/259 (10%)
Query: 41 VVLIDEKEYFEITWASL-RAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTA- 98
+ LI ++ + SL +AV++ S ++ D+ +I + T +T +V T
Sbjct: 30 ISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRT 89
Query: 99 ----GGQTFVYDYVVVATG---HVESVPKSRTE---RLSQYEKDFEKVK----SANSVLI 144
G T D +V+ATG ++P S+ L Y D + ++ SA +LI
Sbjct: 90 ISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTY-GDVQVLRDSWTSATRLLI 148
Query: 145 VGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQS 204
VGGG G E+A A IL L+ +G R LT V+V L
Sbjct: 149 VGGGLIGCEVA-TTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTG 207
Query: 205 VTLNTISDGLIE---TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN 261
V + +G +E S G + D +C G A R+ L R ++ ++
Sbjct: 208 V-VGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-----RGVIVDH 261
Query: 262 LRVRGFKNVFAIGDITDIP 280
K VFA+GD+ P
Sbjct: 262 CGATLAKGVFAVGDVASWP 280
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 94 EVVTAGGQTFVYDYVVVATG------HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGG 147
++ TA G ++VATG +V + RT+ ++ + V ++GG
Sbjct: 93 QIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGG 152
Query: 148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGS-RASQIALDWLTS-KKVEVILNQSV 205
G +GVE A ++A I+ H LLEF +A Q+ D L S K V++ILN
Sbjct: 153 GNSGVEAAIDLA-------GIVEH--VTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQT 203
Query: 206 TLNTISDG--LIETSSGETIDTDCH-------FMCTGKAMASSWLRETILKDSLDGRGRL 256
T DG ++ + + D H F+ G ++WL + ++ + G +
Sbjct: 204 T-EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRM---GEI 259
Query: 257 MVDENLRVRGFKNVFAIGDITDIP 280
++D K VFA GD T +P
Sbjct: 260 IIDAKCETN-VKGVFAAGDCTTVP 282
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 18/194 (9%)
Query: 94 EVVTAGGQTFVYDYVVVATGHVESVP------KSRTERLSQY---EKDFEKVKSANSVLI 144
+++T +T YD +++ TG +VP SR Y +K FE+ A ++ I
Sbjct: 95 DLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITI 154
Query: 145 VGGGPTGVELAGEIAVDFPDKKVILVHRGPKLL-EFVGSRASQIALDWLTSKKVEVILNQ 203
+G G G ELA A + V L+ ++L ++ + I + V ++L
Sbjct: 155 IGSGYIGAELAE--AYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGS 212
Query: 204 SV-TLNTISDGLI-ETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDEN 261
V + D +I +T G+ I +D +C G + L+ + ++ G ++ DE
Sbjct: 213 KVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKV---AMLDNGAIITDEY 269
Query: 262 LRVRGFKNVFAIGD 275
+ +++FA GD
Sbjct: 270 MHSSN-RDIFAAGD 282
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 104 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 163
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 164 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 221
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 222 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 281
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 282 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 315
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 106 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 165
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 166 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 223
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 224 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 283
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 284 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 317
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 104 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 163
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 164 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 221
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 222 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 281
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 282 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 315
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 121 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 238
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 298
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 299 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 332
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 122 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 181
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 182 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 239
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 240 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 299
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 300 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 333
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 120 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 179
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 180 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 237
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 238 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 297
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 298 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 331
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 121 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 238
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 298
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 299 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 332
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 121 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 238
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 298
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 299 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 332
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 121 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEEL 238
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D DC G+ + L
Sbjct: 239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDL 298
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 299 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 332
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 94 EVVTAGGQTFVYDYVVVATG------HVESVPKSRTERLSQYEKDFEKVKSANSVLIVGG 147
++ TA G +++ATG +V + RT+ ++ + V ++GG
Sbjct: 304 QIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGG 363
Query: 148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGS-RASQIALDWLTS-KKVEVILNQSV 205
G +GVE A ++A I+ H LLEF +A Q+ D + S K V++ILN
Sbjct: 364 GNSGVEAAIDLA-------GIVEH--VTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQT 414
Query: 206 TLNTISDG--LIETSSGETIDTDCH-------FMCTGKAMASSWLRETILKDSLDGRGRL 256
T DG ++ + + D H F+ G + WL + ++ + G +
Sbjct: 415 T-EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRM---GEI 470
Query: 257 MVDENLRVRGFKNVFAIGDITDIP 280
++D K VFA GD T +P
Sbjct: 471 IIDAKCET-SVKGVFAAGDCTTVP 493
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 30/220 (13%)
Query: 78 SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK-SRTERLSQYEKDFEKV 136
+NV ++ A D + + G+T D++++ATG S P E + F
Sbjct: 106 NNVDVIKGFA-RFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALP 164
Query: 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK 196
V +VG G VELAG ++ G K FV A + D + S+
Sbjct: 165 ALPERVAVVGAGYIAVELAG-----------VINGLGAKTHLFVRKHAPLRSFDPMISET 213
Query: 197 VEVILN------------QSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRET 244
+ ++N ++V NT +E G + DC G+ A+ +
Sbjct: 214 LVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLE 273
Query: 245 ILKDSLDGRGRLMVD--ENLRVRGFKNVFAIGDITDIPEI 282
+ +G ++VD +N + G ++A+GD T E+
Sbjct: 274 AAGVKTNEKGYIVVDKYQNTNIEG---IYAVGDNTGAVEL 310
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 101 QTFVYDYVVVATGHVESVPKSRTERLSQY-------EKDF-EKVKSANSV---LIVGGGP 149
+T YD +V+A G + P L+ E +F + SA V +IVGGG
Sbjct: 110 RTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGF 169
Query: 150 TGVELAGEIAVDFPDKKVILVHRGPKLLE-FVGSRASQIALDWLTSKKVEVILNQSVTLN 208
G+E+A +A D +V +++ F SQ+ L V V + V
Sbjct: 170 IGLEMAVSLA-DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRL 228
Query: 209 TISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG 266
+G + + T+D D + G + + R+ L+ LD RG ++VD +R
Sbjct: 229 EGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLE--LDPRGAIIVDTRMRTSD 286
Query: 267 FKNVFAIGDITDIPEI---KQGY-----LAQKHALVTAKNL 299
++FA GD IP + K G+ +A + V NL
Sbjct: 287 -PDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNL 326
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 139 ANSVLIVGGGPTGVELAGEIAVDFP----DKKVILVHRGPKLLEFVG-----SRASQIAL 189
+ V+IVG GP G ELA +++ + DK+ + + P L ++ +R +L
Sbjct: 8 GSKVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 67
Query: 190 DWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCHFMCTG 233
DW + +E+ L + L ++ T GE + D + TG
Sbjct: 68 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATG 110
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 21/218 (9%)
Query: 95 VVTAGGQTFVYDYVVVATGHVESVPKSRTER-------LSQYEKDFEKVKSANSVLIVGG 147
V+T G+ YD +V+ATG P+ + + + ++ E ++++ +I+GG
Sbjct: 93 VITEKGEV-PYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGG 151
Query: 148 GPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTL 207
G G+ELAG +A V L+HRG L + S + D L V+ LN + L
Sbjct: 152 GFIGLELAGNLAE--AGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSEL-L 207
Query: 208 NTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGF 267
+G++ T+SG I+ G R + + GRG +++D+N R
Sbjct: 208 EANEEGVL-TNSG-FIEGKVKICAIGIVPNVDLARRSGIH---TGRG-ILIDDNFRTSA- 260
Query: 268 KNVFAIGDITDIPEIKQGYLAQKHALVTAKNLKKLMMG 305
K+V+AIGD + I G K A+ A+ L ++ G
Sbjct: 261 KDVYAIGDCAEYSGIIAG--TAKAAMEQARVLADILKG 296
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 177 LEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTI-------SDGLI----ETSSG-- 220
+EF+G + +D SK + IL + LNT SDG I E +SG
Sbjct: 228 VEFLG-HVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 286
Query: 221 -ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI 279
E I D +C G+ + L L LD RGR+ V+ + + N++AIGD+
Sbjct: 287 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTK-IPNIYAIGDVVAG 345
Query: 280 P 280
P
Sbjct: 346 P 346
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 177 LEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTI-------SDGLI----ETSSG-- 220
+EF+G + +D SK + IL + LNT SDG I E +SG
Sbjct: 207 VEFLG-HVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 221 -ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI 279
E I D +C G+ + L L LD RGR+ V+ + + N++AIGD+
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTK-IPNIYAIGDVVAG 324
Query: 280 P 280
P
Sbjct: 325 P 325
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 177 LEFVGSRASQIALDWLTSKKVEVILNQS---VTLNTI-------SDGLI----ETSSG-- 220
+EF+G + +D SK + IL + LNT SDG I E +SG
Sbjct: 207 VEFLG-HVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 221 -ETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDI 279
E I D +C G+ + L L LD RGR+ V+ + + N++AIGD+
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTK-IPNIYAIGDVVAG 324
Query: 280 P 280
P
Sbjct: 325 P 325
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 99 GGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKVKS---ANSVLIVGGGPTGVELA 155
G + ++D +VATG +VP + S Y E + S + ++G +ELA
Sbjct: 133 GERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELA 192
Query: 156 GEIA-----VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI 210
A V + + P + E V + ++ +EV+ + +
Sbjct: 193 QAFARLGSKVTVLARNTLFFREDPAIGEAVTA--------AFRAEGIEVLEHTQASQVAH 244
Query: 211 SDG--LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFK 268
DG ++ T+ GE + D + TG+ + L +++ +G +++D+ +R
Sbjct: 245 MDGEFVLTTTHGE-LRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSN-P 302
Query: 269 NVFAIGDITDIPE 281
N++A GD TD P+
Sbjct: 303 NIYAAGDCTDQPQ 315
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 37/202 (18%)
Query: 95 VVTAGGQTFVYDYVVVATGHVE---------SVPKSRTERLSQYEKDFEKVKSANSVLIV 145
V + G+T Y +V+ATG ++P L + ++ + +LIV
Sbjct: 92 VALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIV 151
Query: 146 GGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIAL-----DWLTSKKVEVI 200
GGG G+ELA V LV P+L+ SRA+ L + ++ V++
Sbjct: 152 GGGVIGLELAATART--AGVHVSLVETQPRLM----SRAAPATLADFVARYHAAQGVDLR 205
Query: 201 LNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE 260
+SVT + DG++ G I D + G + D+L L D+
Sbjct: 206 FERSVTGSV--DGVVLLDDGTRIAADMVVVGIG----------VLANDALARAAGLACDD 253
Query: 261 NLRVRGF-----KNVFAIGDIT 277
+ V + +V+A+GD+T
Sbjct: 254 GIFVDAYGRTTCPDVYALGDVT 275
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 30/220 (13%)
Query: 78 SNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPK-SRTERLSQYEKDFEKV 136
+NV ++ A D + + G+T D++++ATG S P E + F
Sbjct: 106 NNVDVIKGFA-RFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALP 164
Query: 137 KSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKK 196
V +VG G GVEL G ++ G K F A + D + S+
Sbjct: 165 ALPERVAVVGAGYIGVELGG-----------VINGLGAKTHLFEMFDAPLPSFDPMISET 213
Query: 197 VEVILN------------QSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRET 244
+ ++N ++V NT +E G + DC G+ A+ +
Sbjct: 214 LVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLE 273
Query: 245 ILKDSLDGRGRLMVD--ENLRVRGFKNVFAIGDITDIPEI 282
+ +G ++VD +N + G ++A+GD T E+
Sbjct: 274 AAGVKTNEKGYIVVDKYQNTNIEG---IYAVGDNTGAVEL 310
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 37/202 (18%)
Query: 95 VVTAGGQTFVYDYVVVATGHVE---------SVPKSRTERLSQYEKDFEKVKSANSVLIV 145
V + G+T Y +V+ATG ++P L + ++ + +LIV
Sbjct: 92 VALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIV 151
Query: 146 GGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIAL-----DWLTSKKVEVI 200
GGG G+ELA V LV P+L+ SRA+ L + ++ V++
Sbjct: 152 GGGVIGLELAATART--AGVHVSLVETQPRLM----SRAAPATLADFVARYHAAQGVDLR 205
Query: 201 LNQSVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDE 260
+SVT + DG++ G I D + G + D+L L D+
Sbjct: 206 FERSVTGSV--DGVVLLDDGTRIAADMVVVGIG----------VLANDALARAAGLACDD 253
Query: 261 NLRVRGF-----KNVFAIGDIT 277
+ V + +V+A+GD+T
Sbjct: 254 GIFVDAYGRTTCPDVYALGDVT 275
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 115/260 (44%), Gaps = 36/260 (13%)
Query: 101 QTFVYDYVVVATGHVE---SVPKSRTERLSQYE------KDFEKVKSANSVLIVGGGPTG 151
Q + YD +++ATG + + S+TE+L +Y+ ++++ +V ++G GP G
Sbjct: 100 QWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIG 159
Query: 152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQ--IALDWLTSKKVEVILNQSVT--- 206
E A+DF K VH L + + +A + +K VI + T
Sbjct: 160 XE-----AIDFLVKXKKTVHVFESLENLLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLG 214
Query: 207 LNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRG 266
+ ++G++ +S + I D ++L + I ++ LD + VD L+
Sbjct: 215 IEETANGIVLETSEQEISCDSGIFALNLHPQLAYLDKKIQRN-LD--QTIAVDAYLQT-S 270
Query: 267 FKNVFAIGD---ITDIPEIKQGYL-----AQKHALVTAKNLKKLMMGRNKGTMATY--KP 316
NVFAIGD + + P + Y A + LV A NL++ R G++ T K
Sbjct: 271 VPNVFAIGDCISVXNEPVAETFYAPLVNNAVRTGLVVANNLEE-KTHRFIGSLRTXGTKV 329
Query: 317 G-YPIALVSLGRREGVAHFP 335
G Y +A L EG+ FP
Sbjct: 330 GDYYLASTGLTETEGL-FFP 348
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 143 LIVGGGPTGVELAGEI-AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL 201
L VGGG +E AG A +V L +RG +L S + + L + + V
Sbjct: 192 LCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRT 251
Query: 202 NQS---VTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMV 258
+++ VT N + SG D D + G+ S L+ + G + V
Sbjct: 252 HENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKV 311
Query: 259 DENLRVRGFKNVFAIGDITD 278
D + N++AIGD+TD
Sbjct: 312 DAYSKTN-VDNIYAIGDVTD 330
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHR--GPKLLEFVGSRASQIALDW 191
E V S VLIVG GP G+ LA ++A FPD + +V + GP L A + +
Sbjct: 27 EAVPSQVDVLIVGCGPAGLTLAAQLAA-FPDIRTCIVEQKEGPMELGQADGIACRTMEMF 85
Query: 192 LTSKKVEVILNQSVTLNTIS 211
+ + IL ++ +N ++
Sbjct: 86 EAFEFADSILKEACWINDVT 105
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 143 LIVGGGPTGVELAGEI-AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL 201
L VGGG +E AG A +V L +RG +L S + + L + + V
Sbjct: 192 LCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRT 251
Query: 202 NQS---VTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMV 258
+++ VT N + SG D D + G+ S L+ + G + V
Sbjct: 252 HENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKV 311
Query: 259 DENLRVRGFKNVFAIGDITD 278
D + N++AIGD+TD
Sbjct: 312 DAYSKTN-VDNIYAIGDVTD 330
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 143 LIVGGGPTGVELAGEI-AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL 201
L VGGG +E AG A +V L +RG +L S + + L + + V
Sbjct: 191 LCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRT 250
Query: 202 NQS---VTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMV 258
+++ VT N + SG D D + G+ S L+ + G + V
Sbjct: 251 HENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKV 310
Query: 259 DENLRVRGFKNVFAIGDITD 278
D + N++AIGD+TD
Sbjct: 311 DAYSKTN-VDNIYAIGDVTD 329
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 143 LIVGGGPTGVELAGEI-AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVIL 201
L VGGG +E AG A +V L +RG +L S + + L + + V
Sbjct: 191 LCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRT 250
Query: 202 NQS---VTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMV 258
+++ VT N + SG D D + G+ S L+ + G + V
Sbjct: 251 HENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKV 310
Query: 259 DENLRVRGFKNVFAIGDITD 278
D + N++AIGD+TD
Sbjct: 311 DAYSKTN-VDNIYAIGDVTD 329
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 78 SNVKIVVSTAVSITDTE-VVTAGGQTFVYDYVVVATGHVESVP-KSRTERLS---QYEKD 132
S+++I+ A +D + + G+ + ++++ATG + S P +S+ S +
Sbjct: 121 SHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGF 180
Query: 133 FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWL 192
F+ + +IVG G VE+AG ++ K L+ R K+L S S + L
Sbjct: 181 FQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNXTEEL 238
Query: 193 TSKKVEVILNQSV-----TLNTISDGLIETSSGE------TIDTDCHFMCTGKAMASSWL 241
+ VEV+ V TL+ + ++ G D D G+ + L
Sbjct: 239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDL 298
Query: 242 RETILKDSLDGRGRLMVDE--NLRVRGFKNVFAIGDI 276
L D +G ++VDE N V+G ++A+GD+
Sbjct: 299 SLNKLGIQTDDKGHIIVDEFQNTNVKG---IYAVGDV 332
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 47 KEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYD 106
K Y +I + ++ +P + + G Y ++++ + V I+ E+ GG +
Sbjct: 312 KGYADIIGCARPSIADPFLPQK--VEQGRY-DDIRVCIGCNVCISRWEI---GGPPMIC- 364
Query: 107 YVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELA 155
++ R + + F + K+ +SVLIVG GP+G E A
Sbjct: 365 --------TQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAA 405
>pdb|2QXT|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXT|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 4.5
pdb|2QXU|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|C Chain C, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|D Chain D, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|E Chain E, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|F Chain F, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|G Chain G, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
pdb|2QXU|H Chain H, Crystal Structure Analysis Of The Bacillus Subtilis Lipase
Crystallized At Ph 5.0
Length = 179
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-----DG 213
AVDF DK + GP L FV Q LD +KKV+++ + NT+ DG
Sbjct: 36 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTLYYIKNLDG 90
Query: 214 LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNVFA 272
+ ++ T+ + + TGKA+ + + IL S+ ++V L R+ G +NV
Sbjct: 91 GNKVANVVTLG-GANRLTTGKALPGTDPNQKILYTSIYSSADMIVMNYLSRLDGARNV-- 147
Query: 273 IGDITDIPEIKQGYLAQKHALV 294
I + I Y +Q ++L+
Sbjct: 148 --QIHGVGHIGLLYSSQVNSLI 167
>pdb|1I6W|A Chain A, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1ISP|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase At 1.3a
Resolution
pdb|1R4Z|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R4Z|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
Length = 181
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-----DG 213
AVDF DK + GP L FV Q LD +KKV+++ + NT+ DG
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTLYYIKNLDG 92
Query: 214 LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNVFA 272
+ ++ T+ + + TGKA+ + + IL S+ ++V L R+ G +NV
Sbjct: 93 GNKVANVVTLG-GANRLTTGKALPGTDPNQKILYTSIYSSADMIVMNYLSRLDGARNV-- 149
Query: 273 IGDITDIPEIKQGYLAQKHALV 294
I + I Y +Q ++L+
Sbjct: 150 --QIHGVGHIGLLYSSQVNSLI 169
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 47 KEYFEITWASLRAVVEPSFAVRSVINHGDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYD 106
K Y +I + ++ +P + + G Y ++++ + V I+ E+ GG +
Sbjct: 312 KGYADIIGCARPSIADPFLPQK--VEQGRY-DDIRVCIGCNVCISRWEI---GGPPMIC- 364
Query: 107 YVVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELA 155
++ R + + F + K+ +SVLIVG GP+G E A
Sbjct: 365 --------TQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAA 405
>pdb|1T4M|A Chain A, Structure Of A Thermostable Double Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-----DG 213
AVDF DK + GP L FV Q LD +KKV+++ + NT+ DG
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTLYYIKNLDG 92
Query: 214 LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNVFA 272
+ ++ T+ + + TGKA+ + + IL S+ ++V L R+ G +NV
Sbjct: 93 GNKVANVVTLG-GANRLTTGKALPGTDPNQKILYTSIYSSDDMIVMNYLSRLDGARNV-- 149
Query: 273 IGDITDIPEIKQGYLAQKHALV 294
I + I Y +Q ++L+
Sbjct: 150 --QIHGVGHIGLLYSSQVYSLI 169
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 92 DTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDFEKV-KSANSVLIVGGGPT 150
D + GQ D++V+ATG VP+ L F + + V I+G G
Sbjct: 118 DAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQPKRVAIIGAGYI 177
Query: 151 GVELAG 156
G+ELAG
Sbjct: 178 GIELAG 183
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 127 SQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILV 170
S+Y KD +K + + V+IVG G +G+ A IA + PD KV ++
Sbjct: 54 SRYFKDLDKF-AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII 96
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 193 TSKKVEVILNQ-------SVTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETI 245
+ K V I NQ + + I + I G TI D + + T
Sbjct: 220 SRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNST- 278
Query: 246 LKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLAQKHALVTAKNL 299
D +D G + D N+ + NV+A+GD + K GYLA + A++L
Sbjct: 279 -PDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHL 331
>pdb|1T2N|A Chain A, Structure Of A Thermostable Triple Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-----DG 213
AVDF DK + GP L FV Q LD +KKV+++ + NT+ DG
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTLYYIKNLDG 92
Query: 214 LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNVFA 272
+ ++ T+ + + TGKA + + IL S+ ++V L R+ G +NV
Sbjct: 93 GNKVANVVTLG-GANRLTTGKAPPGTDPNQKILYTSIYSSDDMIVMNYLSRLDGARNV-- 149
Query: 273 IGDITDIPEIKQGYLAQKHALV 294
I + I Y +Q ++L+
Sbjct: 150 --QIHGVGHIGLLYSSQVYSLI 169
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 20/168 (11%)
Query: 74 GDYLSNVKIVVSTAVSITDTEVVTAGGQTFVYDYVVVATGHVESVPKSRTERLSQYEKDF 133
G +++ VK V+ A I + E+ AG Y + KS+ + ++ K+
Sbjct: 14 GRHMAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAE-----KSKATNVDEFWKE- 67
Query: 134 EKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLT 193
+K A +L PT AV P+ ++HRG K+ G+ Q+ +
Sbjct: 68 --MKQAAKILF-ETRPT--------AVSLPNALRYVMHRG-KIAYSSGADLEQLRFVIIN 115
Query: 194 SKKVEVILNQSVTLNTISD-GLIETSSGETIDTDCHFMCTGKAMASSW 240
+ K E I N L I + G G+ I T CH M ++W
Sbjct: 116 AAK-EFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAW 162
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 34/102 (33%)
Query: 144 IVGGGPTGV--------------------ELAGEIAVDFPDKKVILVHRGPK-----LLE 178
I+GGGPTG+ +L G++A +P+K + V P+ L+E
Sbjct: 19 IIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVE 78
Query: 179 FVGSRASQIALDWLTSKKVEVILNQSVTLNT-ISDGLIETSS 219
+ ++A + D V+LN++VT T + DG ET +
Sbjct: 79 SLWAQAERYNPD--------VVLNETVTKYTKLDDGTFETRT 112
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
N+V+++G G G+E A A VI + P L ++ + + + + + + +
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVYLDKEFTDVLTEEMEANNITI 208
Query: 200 ILNQSVTLNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLM 257
++V DG ++ + D D + G ++WL+ T+ L G +
Sbjct: 209 ATGETVERYE-GDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTL---ELHPNGLIK 264
Query: 258 VDENLRVRGFKNVFAIGDIT 277
DE +R +VFA+GD T
Sbjct: 265 TDEYMRTSE-PDVFAVGDAT 283
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
N+V+++G G G+E A A VI + P L ++ + + + + + + +
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVYLDKEFTDVLTEEMEANNITI 208
Query: 200 ILNQSVTLNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLM 257
++V DG ++ + D D + G ++WL+ T+ L G +
Sbjct: 209 ATGETVERYE-GDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTL---ELHPNGLIK 264
Query: 258 VDENLRVRGFKNVFAIGDIT 277
DE +R +VFA+GD T
Sbjct: 265 TDEYMRTSE-PDVFAVGDAT 283
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
N+V+++G G G+E A A VI + P L ++ + + + + + + +
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVYLDKEFTDVLTEEMEANNITI 208
Query: 200 ILNQSVTLNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLM 257
++V DG ++ + D D + G ++WL+ T+ L G +
Sbjct: 209 ATGETVERYE-GDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTL---ELHPNGLIK 264
Query: 258 VDENLRVRGFKNVFAIGDIT 277
DE +R +VFA+GD T
Sbjct: 265 TDEYMRTSE-PDVFAVGDAT 283
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
N+V+++G G G+E A A VI + P L ++ + + + + + + +
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVYLDKEFTDVLTEEMEANNITI 208
Query: 200 ILNQSVTLNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLM 257
++V DG ++ + D D + G ++WL+ T+ L G +
Sbjct: 209 ATGETVERYE-GDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTL---ELHPNGLIK 264
Query: 258 VDENLRVRGFKNVFAIGDIT 277
DE +R +VFA+GD T
Sbjct: 265 TDEYMRTSE-PDVFAVGDAT 283
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-----DG 213
AVDF DK + GP L FV Q LD +KKV+++ + NT+ DG
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTLYYIKYLDG 92
Query: 214 LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNV 270
+ ++ T+ + + TGKA + + IL S+ ++V L R+ G +NV
Sbjct: 93 GNKVANVVTLG-GANRLTTGKAPPGTDPNQKILYTSIYSSDDMIVMNYLSRLDGARNV 149
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
N+V+++G G G+E A A VI + P L ++ + + + + + + +
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVYLDKEFTDVLTEEMEANNITI 208
Query: 200 ILNQSVTLNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLM 257
++V DG ++ + D D + G ++WL+ T+ L G +
Sbjct: 209 ATGETVERYE-GDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTL---ELHPNGLIK 264
Query: 258 VDENLRVRGFKNVFAIGDIT 277
DE +R +VFA+GD T
Sbjct: 265 TDEYMRTSE-PDVFAVGDAT 283
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 140 NSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEV 199
N+V+++G G G+E A A VI + P L ++ + + + + + + +
Sbjct: 150 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVYLDKEFTDVLTEEMEANNITI 208
Query: 200 ILNQSVTLNTISDGLIE--TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLM 257
++V DG ++ + D D + G ++WL+ T+ L G +
Sbjct: 209 ATGETVERYE-GDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTL---ELHPNGLIK 264
Query: 258 VDENLRVRGFKNVFAIGDIT 277
DE +R +VFA+GD T
Sbjct: 265 TDEYMRTSE-PDVFAVGDAT 283
>pdb|3D2A|A Chain A, Structure Of 1-17a4, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS-----DG 213
AVDF DK + GP L FV Q LD +KKV+++ + NT+ DG
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTLYYIKNLDG 92
Query: 214 LIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENL-RVRGFKNV 270
+ ++ T+ + + TGKA + + IL S+ ++V L R+ G +NV
Sbjct: 93 GNKVANVVTLG-GANRLTTGKAPPGTDPNQKILYTSIYSSDDMIVMNYLSRLDGARNV 149
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 86 TAVSITDTEVVTAGGQTFVYDYVVVATGHVE--------SVPKSRTERLSQYEKDFEKVK 137
TA++ +V+ + G+ YD +V+ATG +V K+ R + +D E ++
Sbjct: 83 TAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIR 142
Query: 138 ----SANSVLIVGGGPTGVELAG 156
+ N ++++GGG G+E+A
Sbjct: 143 RQLIADNRLVVIGGGYIGLEVAA 165
>pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (e.c.2.7.7.7) Mutant/dna
Complex
pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 146 GGGP-TGVELAGEIAVDFPDKKVILVHRG 173
GG P T E+ E+A+D+P KVIL +RG
Sbjct: 281 GGAPSTSEEVLEELALDYPLPKVILEYRG 309
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 146 GGGP-TGVELAGEIAVDFPDKKVILVHRG 173
GG P T E+ E+A+D+P KVIL +RG
Sbjct: 281 GGAPSTSEEVLEELALDYPLPKVILEYRG 309
>pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
Polymerase I Complexed With DTMP
pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
Polymerase I Complexed With Deoxynucleoside Triphosphate
And Pyrophosphate
Length = 605
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 146 GGGP-TGVELAGEIAVDFPDKKVILVHRG 173
GG P T E+ E+A+D+P KVIL +RG
Sbjct: 281 GGAPSTSEEVLEELALDYPLPKVILEYRG 309
>pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
Length = 605
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 146 GGGP-TGVELAGEIAVDFPDKKVILVHRG 173
GG P T E+ E+A+D+P KVIL +RG
Sbjct: 281 GGAPSTSEEVLEELALDYPLPKVILEYRG 309
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 86 TAVSITDTEVVTAGGQTFVYDYVVVATGHVE--------SVPKSRTERLSQYEKDFEKVK 137
TA++ +V+ + G+ YD +V+ATG +V K+ R + +D E ++
Sbjct: 84 TAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIR 143
Query: 138 ----SANSVLIVGGGPTGVELAG 156
+ N ++++GGG G+E+A
Sbjct: 144 RQLIADNRLVVIGGGYIGLEVAA 166
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 16/188 (8%)
Query: 101 QTFVYDYVVVATGHVES---VPKSR---TERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
+T +Y+++ATG + VP T + Y +D K +L VGGG VE
Sbjct: 169 ETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPK-----RMLCVGGGYIAVEF 223
Query: 155 AGEIAVDFP-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN---QSVTLNTI 210
AG P V L +RG +L + + L + + V N +T N
Sbjct: 224 AGIFNGYKPCGGYVDLCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNED 283
Query: 211 SDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNV 270
+ + G D D + G+ S L+ G + VD + N+
Sbjct: 284 GSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTS-VDNI 342
Query: 271 FAIGDITD 278
+AIGD+T+
Sbjct: 343 YAIGDVTN 350
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 16/188 (8%)
Query: 101 QTFVYDYVVVATGHVES---VPKSR---TERLSQYEKDFEKVKSANSVLIVGGGPTGVEL 154
+T +Y+++ATG + VP T + Y +D K +L VGGG VE
Sbjct: 169 ETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPK-----RMLCVGGGYIAVEF 223
Query: 155 AGEIAVDFP-DKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN---QSVTLNTI 210
AG P V L +RG +L + + L + + V N +T N
Sbjct: 224 AGIFNGYKPCGGYVDLCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNED 283
Query: 211 SDGLIETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNV 270
+ + G D D + G+ S L+ G + VD + N+
Sbjct: 284 GSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTS-VDNI 342
Query: 271 FAIGDITD 278
+AIGD+T+
Sbjct: 343 YAIGDVTN 350
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 40/250 (16%)
Query: 88 VSITDTEVVTAGGQTFVYDYVVVATG----HVESVPKSRTE---RLSQYEK--DF---EK 135
+ + D V G Y+ ++ATG + ++ ++ E R + + K DF EK
Sbjct: 134 LDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK 193
Query: 136 V-KSANSVLIVGGGPTGVELA-----------GEIAVDFPDKKVILVHRGPKLLEFVGSR 183
+ + S+ I+GGG G ELA E+ FP+K + G L E++
Sbjct: 194 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG----NMGKILPEYL--- 246
Query: 184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWL 241
S ++ + + V+V+ N V +S G LI+ G ++TD G
Sbjct: 247 -SNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 305
Query: 242 RETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLA---QKHALVTAKN 298
+ L+ D G V+ L+ R N++ GD +IK G HA+V+ +
Sbjct: 306 KTGGLEIDSD-FGGFRVNAELQAR--SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRL 362
Query: 299 LKKLMMGRNK 308
+ M G K
Sbjct: 363 AGENMTGAAK 372
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 40/250 (16%)
Query: 88 VSITDTEVVTAGGQTFVYDYVVVATG----HVESVPKSRTE---RLSQYEK--DF---EK 135
+ + D V G Y+ ++ATG + ++ ++ E R + + K DF EK
Sbjct: 116 LDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK 175
Query: 136 V-KSANSVLIVGGGPTGVELA-----------GEIAVDFPDKKVILVHRGPKLLEFVGSR 183
+ + S+ I+GGG G ELA E+ FP+K + G L E++
Sbjct: 176 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG----NMGKILPEYL--- 228
Query: 184 ASQIALDWLTSKKVEVILNQSVTLNTISDG--LIETSSGETIDTDCHFMCTGKAMASSWL 241
S ++ + + V+V+ N V +S G LI+ G ++TD G
Sbjct: 229 -SNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 287
Query: 242 RETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIKQGYLA---QKHALVTAKN 298
+ L+ D G V+ L+ R N++ GD +IK G HA+V+ +
Sbjct: 288 KTGGLEIDSD-FGGFRVNAELQAR--SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRL 344
Query: 299 LKKLMMGRNK 308
+ M G K
Sbjct: 345 AGENMTGAAK 354
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 19/186 (10%)
Query: 103 FVYDYVVVATGHVESVPKSRTERLSQYE-----KDFEKV------KSANSVLIVGGGPTG 151
F YD +++ATG +P+ L D E++ V I+GGG G
Sbjct: 139 FSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 152 VELAGEIAVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTIS 211
+E+A E V+ KKV ++ R + ++ +E++ N++V +
Sbjct: 199 LEMA-ETFVELG-KKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGN 256
Query: 212 DGL--IETSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKN 269
+ + +ET G T D + G + +L T ++ + +G + V+ ++ ++
Sbjct: 257 ERVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGTNIR--TNHKGAIEVNAYMQTN-VQD 312
Query: 270 VFAIGD 275
V+A GD
Sbjct: 313 VYAAGD 318
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 36/268 (13%)
Query: 108 VVVATGHVESVPKSRTERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKV 167
+++A G+ P + + +F +K + + IVG G VEL I D +
Sbjct: 145 ILIAVGNKPVFPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYI 204
Query: 168 ILVHRGPKLLEFVGSRASQIALDWLTSKKVEVI-LNQSVTLNTISDG--LIETSSGETID 224
RG ++L + + + + ++ V + +SD I S G +
Sbjct: 205 FA--RGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYE 262
Query: 225 TDCHFM-CTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDITDIPEIK 283
H + C G++ + L+ L + ++VDEN R N++A+GD
Sbjct: 263 HFDHVIYCVGRSPDTENLKLEKLNVETNN-NYIVVDENQRT-SVNNIYAVGDCC------ 314
Query: 284 QGYLAQKHALVTAKNLKKLMMGR---NKGTMATYKPGYPIALVSLGRREGVAHFPFLTIS 340
+ +K + NL KL NK T Y + L P +
Sbjct: 315 ---MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLT-----------PVAINA 360
Query: 341 GRIPGWIKSRDLFVGKTRK-QLGLKPTV 367
GR+ + R LF+ KTRK L PTV
Sbjct: 361 GRL---LADR-LFLKKTRKTNYKLIPTV 384
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI 210
AVDF DK + GP L FV Q LD +KKV+++ + NT+
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTL 84
>pdb|3QZU|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
pdb|3QZU|B Chain B, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
Length = 181
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI 210
AVDF DK + GP L FV Q LD +KKV+++ + NT+
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTL 84
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 124 ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKLLEFVGSR 183
E + + + V N + GG V +A + D P V+++ L+ R
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP---VLILDEATSALDTESER 517
Query: 184 ASQIALDWLTSKKVEVILNQSVTLNTISDGLIETSSGETIDTDCH 228
A Q ALD L K +++ ++ +D ++ GE I+ H
Sbjct: 518 AIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562
>pdb|4F8C|A Chain A, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4F8C|C Chain C, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
Length = 275
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 154 LAGEIAVDFPDKKVILVHRGP-KLLEFVGSRASQIALDWLTS-KKVEVILNQS------- 204
L + ++ D V + + P +LLE + + SQ A DW S ++VEVIL S
Sbjct: 44 LRANVLLNSDDHSVPIHAKNPSELLEAIDNNISQTAQDWGVSIQEVEVILGSSKRIIEPV 103
Query: 205 --VTLNTISDGLIETSSGETIDTDCHFMCTGKAMASSWLRETI 245
VT NTI ++ D + G++++ S L+E +
Sbjct: 104 AGVTANTIMKLFLDN------DIFSYSFEKGQSLSLSQLQERL 140
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 20/107 (18%)
Query: 82 IVVSTAVSITDTEVVTAGGQTFVYDYVVV----ATGHVESVPKSRTERL-----SQ-YEK 131
+V+ A+ + + +++ + VYD+V V AT + + RTE L SQ +K
Sbjct: 35 VVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDK 94
Query: 132 D----------FEKVKSANSVLIVGGGPTGVELAGEIAVDFPDKKVI 168
D + +K+ + IV P G+E +A+ F D+ +I
Sbjct: 95 DALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAII 141
>pdb|3QMM|A Chain A, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3QMM|B Chain B, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 159 AVDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILNQSVTLNTI 210
AVDF DK + GP L FV Q LD +KKV+++ + NT+
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFV-----QKVLDETGAKKVDIVAHSMGGANTL 84
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 106 DYVVVATGHVESV-PKSRT--ERLSQYEKDFEKVKSANSVLIVGGGPTGVELAG---EIA 159
D V+VATG + P ++ ER+ + + ++ + +++VG G TG E E+
Sbjct: 146 DVVLVATGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELG 205
Query: 160 VDFPDKKVILVHRGPKLLEFVGSRASQIALDWLTSKKVEVILN---QSVTLNTISDGLIE 216
V V +V +L + + A+ + + + V + N SVT T + L+
Sbjct: 206 V-----PVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVT-RTGAGVLVT 259
Query: 217 TSSGETIDTDCHFMCTGKAMASSWLRETILKDSLDGRGRLMVDENLRVRGFKNVFAIGDI 276
+ G T++ M G +S L + L GRG + + + ++A GD
Sbjct: 260 MTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL-GRGNYLTVDRVSRTLATGIYAAGDC 318
Query: 277 TDIPEIK-----QGYLAQKHAL 293
T + + QG +A HAL
Sbjct: 319 TGLLPLASVAAMQGRIAMYHAL 340
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 137 KSANSVLIVGGGPTGVELAGEI 158
+S SV++VG GP G+ LAGE+
Sbjct: 10 RSDASVIVVGAGPAGLMLAGEL 31
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 142 VLIVGGGPTGVELAGEIAVDFPDKKVILVHRG 173
++IVGGG G LA ++ D PD +V+L+ G
Sbjct: 20 IVIVGGGSAGSLLAARLSED-PDSRVLLIEAG 50
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 27/174 (15%)
Query: 152 VELAGEIAVDFPDK-------------KVILVHRGPKLLEFVGSRASQIALDWLTSKKVE 198
VE AGE+ D+ + ++ LV P +L + S A L + ++
Sbjct: 230 VEAAGELQ-DYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIK 288
Query: 199 VILNQSVTLNTISDGLIETS------SGETIDTDCHFMCTGKAMAS--SWLRETILKDSL 250
V L +V L +T + ETI TG + L + I + +
Sbjct: 289 VHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNS 348
Query: 251 DGRGRLMVDENLRVRGFKNVFAIGD--ITDIPEIKQGYLAQKHALVTAKNLKKL 302
RG L V++ L+V+G N+FAIGD +P Q +A + A AKN K+
Sbjct: 349 SKRG-LAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQ--VAHQEAEYLAKNFDKM 399
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 135 KVKSANSVLIVGGGPTGVELAGEI 158
KVK ++SV+++GGGP G+ A E+
Sbjct: 7 KVKGSHSVVVLGGGPAGLCSAFEL 30
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 138 SANSVLIVGGGPTGVELAGEIAVDFPDKKVILVHRGPKL 176
S+ ++IVGGG TG+ A FPD + L+ G +L
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,087,232
Number of Sequences: 62578
Number of extensions: 385045
Number of successful extensions: 1435
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 154
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)